-- dump date   	20140619_000121
-- class       	Genbank::misc_feature
-- table       	misc_feature_note
-- id	note
862908000001	chromosomal replication initiator protein DnaA; Region: DnaA; TIGR00362
862908000002	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908000003	Walker A motif; other site
862908000004	ATP binding site [chemical binding]; other site
862908000005	Walker B motif; other site
862908000006	arginine finger; other site
862908000007	C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571
862908000008	DnaA box-binding interface [nucleotide binding]; other site
862908000009	HMMPfam hit to PF00308, Bacterial chromosomal replication initiator protein, DnaA, score 1.7e-121
862908000010	DNA polymerase III subunit beta; Validated; Region: PRK05643
862908000011	Beta clamp domain.  The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria.  The beta-clamp is structurally similar to the trimeric...; Region: beta_clamp; cd00140
862908000012	putative DNA binding surface [nucleotide binding]; other site
862908000013	dimer interface [polypeptide binding]; other site
862908000014	beta-clamp/clamp loader binding surface; other site
862908000015	beta-clamp/translesion DNA polymerase binding surface; other site
862908000016	HMMPfam hit to PF00712, DNA polymerase III, beta chain, score 6.7e-27
862908000017	HMMPfam hit to PF02767, DNA polymerase III, beta chain, score 1.2e-27
862908000018	HMMPfam hit to PF02768, DNA polymerase III, beta chain, score 2e-31
862908000019	recombination protein F; Reviewed; Region: recF; PRK00064
862908000020	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908000021	Walker A/P-loop; other site
862908000022	ATP binding site [chemical binding]; other site
862908000023	Q-loop/lid; other site
862908000024	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908000025	ABC transporter signature motif; other site
862908000026	Walker B; other site
862908000027	D-loop; other site
862908000028	H-loop/switch region; other site
862908000029	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000030	DNA gyrase subunit B; Provisional; Region: gyrB; PRK14939
862908000031	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908000032	ATP binding site [chemical binding]; other site
862908000033	Mg2+ binding site [ion binding]; other site
862908000034	G-X-G motif; other site
862908000035	TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are; Region: TopoII_Trans_DNA_gyrase; cd00822
862908000036	anchoring element; other site
862908000037	dimer interface [polypeptide binding]; other site
862908000038	ATP binding site [chemical binding]; other site
862908000039	TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the...; Region: TOPRIM_TopoIIA_GyrB; cd03366
862908000040	active site
862908000041	putative metal-binding site [ion binding]; other site
862908000042	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
862908000043	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 6e-26
862908000044	HMMPfam hit to PF00204, DNA topoisomerase II, score 9.2e-87
862908000045	HMMPfam hit to PF01751, TOPRIM, score 1.6e-11
862908000046	PS00177 DNA topoisomerase II signature.
862908000047	HMMPfam hit to PF00986, DNA gyrase, subunit B, C-terminal, score 9.7e-44
862908000048	DNA gyrase subunit A; Validated; Region: PRK05560
862908000049	DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes...; Region: TOP4c; cd00187
862908000050	CAP-like domain; other site
862908000051	active site
862908000052	primary dimer interface [polypeptide binding]; other site
862908000053	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
862908000054	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
862908000055	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
862908000056	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
862908000057	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
862908000058	HMMPfam hit to PF00521, DNA gyrase/topoisomerase IV, subunit A, score 2.6e-296
862908000059	HMMPfam hit to PF03989, DNA gyrase C-terminal repeat, beta-propeller, score 4.9e-13
862908000060	HMMPfam hit to PF03989, DNA gyrase C-terminal repeat, beta-propeller, score 2.6e-07
862908000061	HMMPfam hit to PF03989, DNA gyrase C-terminal repeat, beta-propeller, score 2.2e-10
862908000062	HMMPfam hit to PF03989, DNA gyrase C-terminal repeat, beta-propeller, score 2.6e-14
862908000063	HMMPfam hit to PF03989, DNA gyrase C-terminal repeat, beta-propeller, score 3.9e-13
862908000064	HMMPfam hit to PF03989, DNA gyrase C-terminal repeat, beta-propeller, score 1.6e-16
862908000065	putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917
862908000066	Signal peptide predicted for BMS0006 by SignalP 2.0 HMM (Signal peptide probability 0.784) with cleavage site probability 0.483 between residues 30 and 31
862908000067	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908000068	HMMPfam hit to PF00515, TPR repeat, score 1.2
862908000069	HMMPfam hit to PF00515, TPR repeat, score 0.14; HMMPfam hit to PF07719, , score 0.52; PF07719, Tetratricopeptide repeat
862908000070	HMMPfam hit to PF00515, TPR repeat, score 0.39
862908000071	Signal peptide predicted for BMS0007 by SignalP 2.0 HMM (Signal peptide probability 0.743) with cleavage site probability 0.398 between residues 23 and 24
862908000072	2 probable transmembrane helices predicted for BMS0007 by TMHMM2.0 at aa 7-29 and 39-61
862908000073	Signal peptide predicted for BMS0008 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.892 between residues 27 and 28
862908000074	4 probable transmembrane helices predicted for BMS0008 by TMHMM2.0 at aa 12-29, 33-55, 74-96 and 100-118
862908000075	F0F1 ATP synthase subunit A; Validated; Region: PRK05815
862908000076	F0F1-type ATP synthase, subunit a [Energy production and conversion]; Region: AtpB; COG0356
862908000077	Signal peptide predicted for BMS0009 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.958 between residues 18 and 19
862908000078	5 probable transmembrane helices predicted for BMS0009 by TMHMM2.0 at aa 5-27, 37-56, 106-128, 168-190 and 220-242
862908000079	HMMPfam hit to PF00119, H+-transporting two-sector ATPase, A subunit, score 6.5e-23
862908000080	PS00449 ATP synthase a subunit signature.
862908000081	ATP synthase subunit C; Region: ATP-synt_C; cl00466
862908000082	Signal peptide predicted for BMS0010 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.784 between residues 22 and 23
862908000083	3 probable transmembrane helices predicted for BMS0010 by TMHMM2.0 at aa 4-21, 34-56 and 76-98
862908000084	HMMPfam hit to PF00137, H+-transporting two-sector ATPase, C subunit, score 2.4e-05
862908000085	PS00605 ATP synthase c subunit signature.
862908000086	Domain of unknown function (DUF4008); Region: DUF4008; pfam13186
862908000087	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908000088	FeS/SAM binding site; other site
862908000089	HMMPfam hit to PF04055, Radical SAM, score 1e-08
862908000090	Signal peptide predicted for BMS0012 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.777 between residues 21 and 22
862908000091	riboflavin biosynthesis protein RibD; Region: eubact_ribD; TIGR00326
862908000092	Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the...; Region: Riboflavin_deaminase-reductase; cd01284
862908000093	catalytic motif [active]
862908000094	Zn binding site [ion binding]; other site
862908000095	RibD C-terminal domain; Region: RibD_C; cl17279
862908000096	HMMPfam hit to PF00383, Cytidine/deoxycytidylate deaminase, zinc-binding region, score 1.6e-29
862908000097	HMMPfam hit to PF01872, Bacterial bifunctional deaminase-reductase, C-terminal, score 6.4e-47
862908000098	riboflavin synthase subunit alpha; Provisional; Region: PRK09289
862908000099	Lumazine binding domain; Region: Lum_binding; pfam00677
862908000100	Lumazine binding domain; Region: Lum_binding; pfam00677
862908000101	HMMPfam hit to PF00677, Lumazine-binding protein, score 6.9e-11
862908000102	HMMPfam hit to PF00677, Lumazine-binding protein, score 2.9e-24
862908000103	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional; Region: PRK09311
862908000104	3,4-dihydroxy-2-butanone 4-phosphate synthase; Region: DHBP_synthase; pfam00926
862908000105	GTP cyclohydrolase II (RibA).  GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the...; Region: GTP_cyclohydro2; cd00641
862908000106	dimerization interface [polypeptide binding]; other site
862908000107	active site
862908000108	HMMPfam hit to PF00926, 3,4-Dihydroxy-2-butanone 4-phosphate synthase, score 5.1e-114
862908000109	HMMPfam hit to PF00925, GTP cyclohydrolase II, score 3e-85
862908000110	lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2); type-I; Region: Lumazine_synthase-I; cd09209
862908000111	homopentamer interface [polypeptide binding]; other site
862908000112	active site
862908000113	HMMPfam hit to PF00885, 6,7-dimethyl-8-ribityllumazine synthase, score 1.6e-80
862908000114	A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity...; Region: APP_MetAP; cd01066
862908000115	active site
862908000116	RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; smart00967
862908000117	rRNA methylase, putative, group 3; Region: rRNA_methyl_3; TIGR00186
862908000118	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
862908000119	HMMPfam hit to PF00588, tRNA/rRNA methyltransferase (SpoU), score 3.2e-21
862908000120	excinuclease ABC subunit A; Reviewed; Region: uvrA; PRK00349
862908000121	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
862908000122	ATP-binding cassette domain I of the excision repair protein UvrA; Region: ABC_UvrA_I; cd03270
862908000123	ATP-binding cassette domain II of the excision repair protein UvrA; Region: ABC_UvrA_II; cd03271
862908000124	HMMPfam hit to PF00005, ABC transporter, score 2.6e-22
862908000125	PS00211 ABC transporters family signature.
862908000126	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000127	HMMPfam hit to PF00005, ABC transporter, score 4.9e-09
862908000128	PS00211 ABC transporters family signature.
862908000129	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000130	Pyridoxal phosphate biosynthetic protein PdxA; Region: PdxA; cl00873
862908000131	4-hydroxythreonine-4-phosphate dehydrogenase; Validated; Region: pdxA; PRK03743
862908000132	HMMPfam hit to PF04166, Pyridoxal phosphate biosynthetic protein PdxA, score 6.7e-18
862908000133	SurA N-terminal domain; Region: SurA_N; pfam09312
862908000134	Signal peptide predicted for BMS0021 by SignalP 2.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.985 between residues 18 and 19
862908000135	SurA N-terminal domain; Region: SurA_N_3; cl07813
862908000136	peptidylprolyl isomerase; Provisional; Region: prsA; PRK00059
862908000137	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
862908000138	HMMPfam hit to PF00639, PpiC-type peptidyl-prolyl cis-trans isomerase, score 8.8e-18
862908000139	PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature.
862908000140	Signal peptide predicted for BMS0022 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.992 between residues 20 and 21
862908000141	Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]; Region: Mfd; COG1197
862908000142	CarD-like/TRCF domain; Region: CarD_TRCF; smart01058
862908000143	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
862908000144	ATP binding site [chemical binding]; other site
862908000145	putative Mg++ binding site [ion binding]; other site
862908000146	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
862908000147	nucleotide binding region [chemical binding]; other site
862908000148	ATP-binding site [chemical binding]; other site
862908000149	This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli; Region: TRCF; smart00982
862908000150	HMMPfam hit to PF03461, TRCF, score 3.4e-14
862908000151	HMMPfam hit to PF00271, Helicase, C-terminal, score 2.3e-19
862908000152	HMMPfam hit to PF00270, DEAD/DEAH box helicase, N-terminal, score 1.6e-33
862908000153	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 3e-07
862908000154	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000155	HMMPfam hit to PF02559, Transcription factor CarD, score 8.6e-24
862908000156	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; Region: Oxidored_q4; cl00535
862908000157	3 probable transmembrane helices predicted for BMS0024 by TMHMM2.0 at aa 10-32, 65-87 and 97-119
862908000158	PS00445 FGGY family of carbohydrate kinases signature 2.
862908000159	HMMPfam hit to PF00507, NADH-ubiquinone/plastoquinone oxidoreductase, chain 3, score 3.7e-27
862908000160	NADH:ubiquinone oxidoreductase subunit H; Provisional; Region: PRK06076
862908000161	Formate hydrogenlyase subunit 4 [Energy production and conversion]; Region: HyfC; COG0650
862908000162	8 probable transmembrane helices predicted for BMS0025 by TMHMM2.0 at aa 20-42, 94-116, 126-148, 165-187, 202-221, 252-274, 307-329 and 342-364
862908000163	HMMPfam hit to PF00146, Respiratory-chain NADH dehydrogenase, subunit 1, score 7.1e-106
862908000164	PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1.
862908000165	PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2.
862908000166	NADH:ubiquinone oxidoreductase subunit J; Provisional; Region: PRK06638
862908000167	NADH dehydrogenase subunit J; Provisional; Region: PRK06433
862908000168	Signal peptide predicted for BMS0026 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.506 between residues 20 and 21
862908000169	HMMPfam hit to PF00499, NADH-ubiquinone/plastoquinone oxidoreductase, chain 6, score 1.1e-06
862908000170	5 probable transmembrane helices predicted for BMS0026 by TMHMM2.0 at aa 5-24, 31-53, 57-79, 100-122 and 147-169
862908000171	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; Region: Oxidored_q2; cl00492
862908000172	3 probable transmembrane helices predicted for BMS0027 by TMHMM2.0 at aa 4-23, 28-50 and 60-82
862908000173	HMMPfam hit to PF00420, NADH-ubiquinone oxidoreductase, chain 4L, score 3.7e-24
862908000174	proton-translocating NADH-quinone oxidoreductase, chain L; Region: NDH_I_L; TIGR01974
862908000175	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; Region: Oxidored_q1_N; pfam00662
862908000176	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
862908000177	Signal peptide predicted for BMS0028 by SignalP 2.0 HMM (Signal peptide probability 0.909) with cleavage site probability 0.751 between residues 20 and 21
862908000178	15 probable transmembrane helices predicted for BMS0028 by TMHMM2.0 at aa 4-26, 33-52, 93-115, 127-144, 148-170, 191-213, 223-245, 266-288, 293-315, 322-344, 396-418, 439-461, 481-503, 578-600 and 708-725
862908000179	HMMPfam hit to PF00662, NADH-Ubiquinone oxidoreductase (complex I), chain 5/L, N-terminal, score 6.3e-14
862908000180	HMMPfam hit to PF00361, NADH/Ubiquinone/plastoquinone (complex I), score 2e-85
862908000181	NADH:ubiquinone oxidoreductase subunit M; Reviewed; Region: PRK05846
862908000182	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
862908000183	14 probable transmembrane helices predicted for BMS0029 by TMHMM2.0 at aa 10-27, 34-56, 88-110, 117-134, 138-160, 172-194, 229-251, 260-282, 292-314, 321-343, 348-370, 394-416, 431-453 and 474-496
862908000184	HMMPfam hit to PF00361, NADH/Ubiquinone/plastoquinone (complex I), score 2.4e-78
862908000185	NADH:ubiquinone oxidoreductase subunit N; Provisional; Region: PRK05777
862908000186	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
862908000187	13 probable transmembrane helices predicted for BMS0030 by TMHMM2.0 at aa 10-29, 42-64, 79-98, 111-128, 133-150, 170-192, 207-229, 242-264, 279-301, 332-354, 380-402, 415-434 and 460-482
862908000188	HMMPfam hit to PF00361, NADH/Ubiquinone/plastoquinone (complex I), score 1.5e-67
862908000189	3 probable transmembrane helices predicted for BMS0031 by TMHMM2.0 at aa 5-27, 47-69 and 79-98
862908000190	8 probable transmembrane helices predicted for BMS0032 by TMHMM2.0 at aa 4-26, 55-77, 92-113, 126-148, 163-185, 206-226, 241-263 and 276-294
862908000191	5 probable transmembrane helices predicted for BMS0033 by TMHMM2.0 at aa 4-20, 27-44, 48-67, 86-108 and 128-150
862908000192	Signal peptide predicted for BMS0034 by SignalP 2.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.834 between residues 26 and 27
862908000193	3 probable transmembrane helices predicted for BMS0034 by TMHMM2.0 at aa 4-23, 30-48 and 58-80
862908000194	13 probable transmembrane helices predicted for BMS0035 by TMHMM2.0 at aa 21-41, 51-73, 85-107, 120-142, 163-182, 202-224, 237-256, 261-279, 292-314, 324-343, 364-386, 406-428 and 484-503
862908000195	6 probable transmembrane helices predicted for BMS0036 by TMHMM2.0 at aa 15-37, 44-66, 81-103, 131-153, 173-195 and 215-237
862908000196	10 probable transmembrane helices predicted for BMS0037 by TMHMM2.0 at aa 7-29, 49-71, 91-113, 123-145, 152-174, 189-208, 213-235, 245-264, 271-293 and 303-325
862908000197	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908000198	binding surface
862908000199	TPR motif; other site
862908000200	TPR repeat; Region: TPR_11; pfam13414
862908000201	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908000202	binding surface
862908000203	TPR motif; other site
862908000204	TPR repeat; Region: TPR_11; pfam13414
862908000205	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908000206	TPR motif; other site
862908000207	binding surface
862908000208	Tetratricopeptide repeat; Region: TPR_16; pfam13432
862908000209	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908000210	binding surface
862908000211	TPR motif; other site
862908000212	Tetratricopeptide repeat; Region: TPR_12; pfam13424
862908000213	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908000214	TPR repeat; Region: TPR_11; pfam13414
862908000215	binding surface
862908000216	TPR motif; other site
862908000217	1 probable transmembrane helix predicted for BMS0038 by TMHMM2.0 at aa 279-296
862908000218	HMMPfam hit to PF00515, TPR repeat, score 0.36; HMMPfam hit to PF07719, Tetratricopeptide repeat, score 0.095
862908000219	HMMPfam hit to PF07719, , score 0.042; PF07719, Tetratricopeptide repeat; HMMPfam hit to PF00515, TPR repeat, score 0.46
862908000220	HMMPfam hit to PF00515, TPR repeat, score 0.96; HMMPfam hit to PF07719, , score 0.89; PF07719, Tetratricopeptide repeat
862908000221	HMMPfam hit to PF00515, TPR repeat, score 0.17
862908000222	HMMPfam hit to PF07719, , score 1.5; PF07719, Tetratricopeptide repeat
862908000223	HMMPfam hit to PF07719, , score 0.93; PF07719, Tetratricopeptide repeat; HMMPfam hit to PF00515, TPR repeat, score 0.81
862908000224	HMMPfam hit to PF00515, TPR repeat, score 1.4; HMMPfam hit to PF07719, , score 0.037; PF07719, Tetratricopeptide repeat
862908000225	HMMPfam hit to PF07719, , score 0.48; PF07719, Tetratricopeptide repeat; HMMPfam hit to PF00515, TPR repeat, score 0.097
862908000226	HMMPfam hit to PF00515, TPR repeat, score 0.0005; HMMPfam hit to PF07719, , score 4.1e-06; PF07719, Tetratricopeptide repeat
862908000227	HMMPfam hit to PF00515, TPR repeat, score 2.1; HMMPfam hit to PF07719, , score 0.46; PF07719, Tetratricopeptide repeat
862908000228	RNA polymerase sigma factor; Provisional; Region: PRK12518
862908000229	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
862908000230	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
862908000231	DNA binding residues [nucleotide binding]
862908000232	HMMPfam hit to PF04542, Sigma-70 region 2, score 5.8e-15
862908000233	PS01063 Sigma-70 factors ECF subfamily signature.
862908000234	CpxP component of the bacterial Cpx-two-component system and related proteins; Region: CpxP_like; cl01482
862908000235	dimer interface [polypeptide binding]; other site
862908000236	Signal peptide predicted for BMS0041 by SignalP 2.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.990 between residues 47 and 48
862908000237	asparagine synthetase B; Provisional; Region: asnB; PRK09431
862908000238	Glutamine amidotransferases class-II (GATase) asparagine synthase_B type.  Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a  glutaminase domain and a...; Region: AsnB; cd00712
862908000239	dimer interface [polypeptide binding]; other site
862908000240	active site
862908000241	The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B  catalyzes the...; Region: Asn_Synthase_B_C; cd01991
862908000242	Ligand Binding Site [chemical binding]; other site
862908000243	Molecular Tunnel; other site
862908000244	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000245	HMMPfam hit to PF00733, Asparagine synthase, score 2e-82
862908000246	HMMPfam hit to PF00310, Glutamine amidotransferase, class-II, score 1.7e-06
862908000247	DNA-binding transcriptional regulator AsnC; Provisional; Region: PRK11179
862908000248	AsnC-type helix-turn-helix domain; Region: HTH_AsnC-type; pfam13404
862908000249	putative DNA binding site [nucleotide binding]; other site
862908000250	putative Zn2+ binding site [ion binding]; other site
862908000251	AsnC family; Region: AsnC_trans_reg; pfam01037
862908000252	HMMPfam hit to PF01037, Bacterial regulatory proteins, AsnC/Lrp, score 1e-17
862908000253	Response regulator receiver domain; Region: Response_reg; pfam00072
862908000254	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908000255	active site
862908000256	phosphorylation site [posttranslational modification]
862908000257	intermolecular recognition site; other site
862908000258	dimerization interface [polypeptide binding]; other site
862908000259	HMMPfam hit to PF00072, Response regulator receiver, score 1.2e-20
862908000260	4 probable transmembrane helices predicted for BMS0045 by TMHMM2.0 at aa 20-39, 43-61, 68-90 and 100-122
862908000261	Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285
862908000262	nucleoside/Zn binding site; other site
862908000263	dimer interface [polypeptide binding]; other site
862908000264	catalytic motif [active]
862908000265	HMMPfam hit to PF00383, Cytidine/deoxycytidylate deaminase, zinc-binding region, score 2.1e-39
862908000266	PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.
862908000267	Signal peptide predicted for BMS0047 by SignalP 2.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.925 between residues 18 and 19
862908000268	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
862908000269	Coenzyme A binding pocket [chemical binding]; other site
862908000270	HMMPfam hit to PF00583, GCN5-related N-acetyltransferase, score 3.8e-12
862908000271	Signal peptide predicted for BMS0049 by SignalP 2.0 HMM (Signal peptide probability 0.979) with cleavage site probability 0.975 between residues 41 and 42
862908000272	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908000273	DNA polymerase III, delta subunit; Region: DNA_pol3_delta2; pfam13177
862908000274	Walker A motif; other site
862908000275	ATP binding site [chemical binding]; other site
862908000276	Walker B motif; other site
862908000277	arginine finger; other site
862908000278	HMMPfam hit to PF00004, AAA ATPase, central region, score 1.2e-06
862908000279	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000280	HMMPfam hit to PF02575, Conserved hypothetical protein 103, score 3e-34
862908000281	recombination protein RecR; Reviewed; Region: recR; PRK00076
862908000282	RecR protein; Region: RecR; pfam02132
862908000283	TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR.  RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a...; Region: TOPRIM_recR; cd01025
862908000284	putative active site [active]
862908000285	putative metal-binding site [ion binding]; other site
862908000286	tetramer interface [polypeptide binding]; other site
862908000287	HMMPfam hit to PF02132, RecR protein, score 0.0005
862908000288	PS01300 RecR protein signature.
862908000289	HMMPfam hit to PF01751, TOPRIM, score 2.2e-07
862908000290	biotin carboxylase-like protein; Validated; Region: PRK06524
862908000291	GTPase SAR1 and related small G proteins [General function prediction only]; Region: COG1100
862908000292	Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Region: Ras_like_GTPase; cd00882
862908000293	G1 box; other site
862908000294	GTP/Mg2+ binding site [chemical binding]; other site
862908000295	G2 box; other site
862908000296	Switch I region; other site
862908000297	G3 box; other site
862908000298	Switch II region; other site
862908000299	G4 box; other site
862908000300	G5 box; other site
862908000301	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000302	Phosphorylase superfamily; Region: PNP_UDP_1; cl00303
862908000303	HMMPfam hit to PF00896, Purine phosphorylase, family 2, score 7.3e-91
862908000304	PS01240 Purine and other phosphorylases family 2 signature.
862908000305	16S rRNA m(4)C1402 methyltranserfase; Provisional; Region: PRK00050
862908000306	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908000307	S-adenosylmethionine binding site [chemical binding]; other site
862908000308	HMMPfam hit to PF01795, Bacterial methyltransferase, score 3.6e-119
862908000309	Signal peptide predicted for BMS0058 by SignalP 2.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.731 between residues 44 and 45
862908000310	1 probable transmembrane helix predicted for BMS0058 by TMHMM2.0 at aa 28-50
862908000311	Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]; Region: FtsI; COG0768
862908000312	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
862908000313	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; pfam00905
862908000314	PASTA domain of PBP2x-like proteins, second repeat. Penicillin-binding proteins (PBPs) are the major targets for beta-lactam antibiotics, like penicillins and cephalosporins. Beta-lactam antibiotics specifically inhibit transpeptidase activity by...; Region: PASTA_Pbp2x-like_2; cd06575
862908000315	Signal peptide predicted for BMS0059 by SignalP 2.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.836 between residues 31 and 32
862908000316	1 probable transmembrane helix predicted for BMS0059 by TMHMM2.0 at aa 12-31
862908000317	HMMPfam hit to PF03717, Penicillin-binding protein, dimerisation domain, score 1.1e-41
862908000318	HMMPfam hit to PF00905, Penicillin-binding protein, transpeptidase, score 5.6e-68
862908000319	HMMPfam hit to PF03793, PASTA, score 0.00069
862908000320	UDP-N-acetylmuramyl-tripeptide synthetase; Region: murE; TIGR01085
862908000321	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
862908000322	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
862908000323	HMMPfam hit to PF01225, Cytoplasmic peptidoglycan synthetase, N-terminal, score 1e-10
862908000324	HMMPfam hit to PF02875, Cytoplasmic peptidoglycan synthetases, C-terminal, score 2e-23
862908000325	UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]; Region: MurF; COG0770
862908000326	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
862908000327	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
862908000328	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
862908000329	HMMPfam hit to PF01225, Cytoplasmic peptidoglycan synthetase, N-terminal, score 1.2e-18
862908000330	HMMPfam hit to PF02875, Cytoplasmic peptidoglycan synthetases, C-terminal, score 0.00011
862908000331	phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional; Region: mraY; PRK00108
862908000332	Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of...; Region: GT_MraY; cd06852
862908000333	Mg++ binding site [ion binding]; other site
862908000334	putative catalytic motif [active]
862908000335	putative substrate binding site [chemical binding]; other site
862908000336	10 probable transmembrane helices predicted for BMS0062 by TMHMM2.0 at aa 26-48, 69-91, 97-114, 134-153, 168-190, 197-219, 234-253, 260-282, 287-309 and 336-355
862908000337	HMMPfam hit to PF00953, Glycosyl transferase, family 4, score 4.5e-58
862908000338	UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]; Region: MurD; COG0771
862908000339	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
862908000340	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
862908000341	HMMPfam hit to PF01225, Cytoplasmic peptidoglycan synthetase, N-terminal, score 1.4e-26
862908000342	HMMPfam hit to PF02875, Cytoplasmic peptidoglycan synthetases, C-terminal, score 4.7e-05
862908000343	cell division protein FtsW; Region: ftsW; TIGR02614
862908000344	HMMPfam hit to PF01098, Cell cycle protein, score 8.6e-109
862908000345	10 probable transmembrane helices predicted for BMS0064 by TMHMM2.0 at aa 13-35, 45-67, 79-101, 111-133, 145-160, 164-183, 188-210, 273-295, 307-329 and 339-361
862908000346	PS00428 Cell cycle proteins ftsW / rodA / spoVE signature.
862908000347	UDP-N-acetylmuramate--L-alanine ligase; Provisional; Region: murC; PRK00421
862908000348	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
862908000349	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
862908000350	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
862908000351	HMMPfam hit to PF01225, Cytoplasmic peptidoglycan synthetase, N-terminal, score 4.3e-57
862908000352	HMMPfam hit to PF02875, Cytoplasmic peptidoglycan synthetases, C-terminal, score 1.1e-21
862908000353	UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional; Region: murB; PRK13905
862908000354	FAD binding domain; Region: FAD_binding_4; pfam01565
862908000355	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; Region: MurB_C; pfam02873
862908000356	HMMPfam hit to PF02873, UDP-N-acetylenolpyruvoylglucosamine reductase, score 4.9e-17
862908000357	Signal peptide predicted for BMS0067 by SignalP 2.0 HMM (Signal peptide probability 0.958) with cleavage site probability 0.317 between residues 23 and 24
862908000358	1 probable transmembrane helix predicted for BMS0067 by TMHMM2.0 at aa 10-32
862908000359	cell division protein FtsA; Region: ftsA; TIGR01174
862908000360	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
862908000361	nucleotide binding site [chemical binding]; other site
862908000362	SHS2 domain inserted in FTSA; Region: SHS2_FTSA; pfam02491
862908000363	Cell division protein FtsA; Region: FtsA; pfam14450
862908000364	HMMPfam hit to PF02491, Cell division protein FtsA, score 2.1e-56
862908000365	HMMPfam hit to PF02491, Cell division protein FtsA, score 3.5e-41
862908000366	cell division protein FtsZ; Validated; Region: PRK09330
862908000367	FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes.  FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at...; Region: FtsZ_type1; cd02201
862908000368	nucleotide binding site [chemical binding]; other site
862908000369	SulA interaction site; other site
862908000370	HMMPfam hit to PF00091, Tubulin/FtsZ, GTPase, score 5.6e-84
862908000371	PS01134 FtsZ protein signature 1.
862908000372	PS01135 FtsZ protein signature 2.
862908000373	HMMPfam hit to PF03953, Tubulin/FtsZ, C-terminal, score 1.8e-31
862908000374	Signal peptide predicted for BMS0071 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.835 between residues 32 and 33
862908000375	1 probable transmembrane helix predicted for BMS0071 by TMHMM2.0 at aa 10-32
862908000376	mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]; Region: COG0595
862908000377	Metallo-beta-lactamase superfamily; Region: Lactamase_B; smart00849
862908000378	RNA-metabolising metallo-beta-lactamase; Region: RMMBL; pfam07521
862908000379	HMMPfam hit to PF07521, RNA-metabolising metallo-beta-lactamase, score 1.1e-05
862908000380	HMMPfam hit to PF00753, Beta-lactamase-like, score 1.2e-09
862908000381	Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway; Region: UMPK; cd02023
862908000382	Uridine kinase [Nucleotide transport and metabolism]; Region: Udk; COG0572
862908000383	ATP-binding site [chemical binding]; other site
862908000384	Sugar specificity; other site
862908000385	Pyrimidine base specificity; other site
862908000386	HMMPfam hit to PF00485, Phosphoribulokinase/uridine kinase, score 3.6e-51
862908000387	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000388	The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like; cd00995
862908000389	Bacterial extracellular solute-binding proteins, family 5 Middle; Region: SBP_bac_5; pfam00496
862908000390	Signal peptide predicted for BMS0075 by SignalP 2.0 HMM (Signal peptide probability 0.921) with cleavage site probability 0.574 between residues 26 and 27
862908000391	HMMPfam hit to PF00496, Bacterial extracellular solute-binding protein, family 5, score 2e-33
862908000392	PS00636 Nt-dnaJ domain signature.
862908000393	Ribosomal protein L11 methyltransferase (PrmA); Region: PrmA; pfam06325
862908000394	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
862908000395	HMMPfam hit to PF06325, Ribosomal L11 methyltransferase, score 3.5e-19
862908000396	RNA methyltransferase, RsmE family; Region: TIGR00046
862908000397	16S ribosomal RNA methyltransferase RsmE; Provisional; Region: PRK11713
862908000398	HMMPfam hit to PF04452, Protein of unknown function DUF558, score 0.0001
862908000399	RDD family; Region: RDD; pfam06271
862908000400	HMMPfam hit to PF06271, RDD, score 3.7e-08
862908000401	3 probable transmembrane helices predicted for BMS0078 by TMHMM2.0 at aa 138-160, 172-191 and 220-239
862908000402	rfaE bifunctional protein, domain II; Region: rfaE_dom_II; TIGR02199
862908000403	Cytidylyltransferase; Region: CTP_transf_2; pfam01467
862908000404	active site
862908000405	nucleotide binding site [chemical binding]; other site
862908000406	HIGH motif; other site
862908000407	KMSKS motif; other site
862908000408	HMMPfam hit to PF01467, Cytidylyltransferase, score 8.1e-15
862908000409	flagellin; Provisional; Region: PRK12802
862908000410	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
862908000411	Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700
862908000412	HMMPfam hit to PF00669, Flagellin, N-terminal, score 3.6e-46
862908000413	HMMPfam hit to PF00700, Flagellin, C-terminal, score 1.1e-27
862908000414	flagellin; Provisional; Region: PRK12802
862908000415	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
862908000416	Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700
862908000417	HMMPfam hit to PF00669, Flagellin, N-terminal, score 1.2e-53
862908000418	HMMPfam hit to PF00700, Flagellin, C-terminal, score 4.5e-19
862908000419	PilZ domain; Region: PilZ; pfam07238
862908000420	Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain; Region: MPP_YbbF-LpxH; cd07398
862908000421	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
862908000422	putative active site [active]
862908000423	putative metal binding site [ion binding]; other site
862908000424	HMMPfam hit to PF00149, Metallophosphoesterase, score 3.5e-07
862908000425	ATPase involved in DNA repair [DNA replication, recombination, and repair]; Region: RecN; COG0497
862908000426	ATP-binding cassette domain of RecN; Region: ABC_RecN; cd03241
862908000427	Walker A/P-loop; other site
862908000428	ATP binding site [chemical binding]; other site
862908000429	Q-loop/lid; other site
862908000430	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908000431	ABC transporter signature motif; other site
862908000432	Walker B; other site
862908000433	D-loop; other site
862908000434	H-loop/switch region; other site
862908000435	HMMPfam hit to PF02463, SMC protein, N-terminal, score 2e-06
862908000436	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000437	NAD kinase [Coenzyme metabolism]; Region: nadF; COG0061
862908000438	inorganic polyphosphate/ATP-NAD kinase; Provisional; Region: ppnK; PRK02231
862908000439	HMMPfam hit to PF01513, ATP-NAD/AcoX kinase, score 9.3e-54
862908000440	Response regulator receiver domain; Region: Response_reg; pfam00072
862908000441	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908000442	active site
862908000443	phosphorylation site [posttranslational modification]
862908000444	intermolecular recognition site; other site
862908000445	dimerization interface [polypeptide binding]; other site
862908000446	HMMPfam hit to PF00072, Response regulator receiver, score 2.3e-11
862908000447	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908000448	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908000449	ATP binding site [chemical binding]; other site
862908000450	Mg2+ binding site [ion binding]; other site
862908000451	G-X-G motif; other site
862908000452	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 3.1e-27
862908000453	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 1.2e-06
862908000454	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
862908000455	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
862908000456	putative active site [active]
862908000457	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
862908000458	ADP-heptose:LPS heptosyl transferase I; Provisional; Region: PRK10964; cl15782
862908000459	PS00136 Serine proteases, subtilase family, aspartic acid active site.
862908000460	Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]; Region: FliS; COG1516
862908000461	HMMPfam hit to PF02561, Flagellar protein FliS, score 2.2e-27
862908000462	Flagellar hook-associated protein 2 C-terminus; Region: FliD_N; pfam02465
862908000463	Flagellar hook-associated protein 2 C-terminus; Region: FliD_C; pfam07195
862908000464	HMMPfam hit to PF07195, Flagellar hook-associated 2, C-terminal, score 1e-35
862908000465	HMMPfam hit to PF02465, Flagellar hook-associated protein 2, N-terminal, score 3.4e-09
862908000466	12 probable transmembrane helices predicted for BMS0097 by TMHMM2.0 at aa 19-36, 46-65, 86-108, 112-129, 157-176, 215-237, 250-272, 306-328, 341-363, 383-400, 420-439 and 444-466
862908000467	FIG, FBPase/IMPase/glpX-like domain. A superfamily of metal-dependent phosphatases with various substrates. Fructose-1,6-bisphospatase (both the major and the glpX-encoded variant) hydrolyze fructose-1,6,-bisphosphate to fructose-6-phosphate in...; Region: FIG; cl00289
862908000468	active site
862908000469	HMMPfam hit to PF00459, Inositol monophosphatase, score 1.7e-06
862908000470	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
862908000471	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908000472	Walker A motif; other site
862908000473	ATP binding site [chemical binding]; other site
862908000474	Walker B motif; other site
862908000475	arginine finger; other site
862908000476	HMMPfam hit to PF00158, Sigma-54 factor, interaction region, score 7.8e-71
862908000477	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
862908000478	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000479	23S rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: FtsJ; COG0293
862908000480	FtsJ-like methyltransferase; Region: FtsJ; cl17430
862908000481	HMMPfam hit to PF01728, Ribosomal RNA methyltransferase RrmJ/FtsJ, score 1.2e-51
862908000482	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
862908000483	Signal peptide predicted for BMS0103 by SignalP 2.0 HMM (Signal peptide probability 0.963) with cleavage site probability 0.529 between residues 29 and 30
862908000484	1 probable transmembrane helix predicted for BMS0103 by TMHMM2.0 at aa 12-31
862908000485	HMMPfam hit to PF00905, Penicillin-binding protein, transpeptidase, score 3.5e-11
862908000486	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000487	signal peptidase I, bacterial type; Region: sigpep_I_bact; TIGR02227
862908000488	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
862908000489	Catalytic site [active]
862908000490	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
862908000491	1 probable transmembrane helix predicted for BMS0104 by TMHMM2.0 at aa 20-38
862908000492	HMMPfam hit to PF00717, Peptidase S24, S26A and S26B, score 1.1e-23
862908000493	PS00501 Signal peptidases I serine active site.
862908000494	PS00760 Signal peptidases I lysine active site.
862908000495	PS00761 Signal peptidases I signature 3.
862908000496	recombination and DNA strand exchange inhibitor protein; Reviewed; Region: PRK00409
862908000497	MutS domain III; Region: MutS_III; pfam05192
862908000498	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908000499	Walker A/P-loop; other site
862908000500	ATP binding site [chemical binding]; other site
862908000501	Q-loop/lid; other site
862908000502	ABC transporter signature motif; other site
862908000503	Walker B; other site
862908000504	D-loop; other site
862908000505	H-loop/switch region; other site
862908000506	Smr domain; Region: Smr; pfam01713
862908000507	HMMPfam hit to PF01713, Smr protein/MutS2 C-terminal, score 4.4e-09
862908000508	HMMPfam hit to PF00488, DNA mismatch repair protein MutS, C-terminal, score 5e-10
862908000509	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000510	Domain of unknown function (DUF814); Region: DUF814; pfam05670
862908000511	HMMPfam hit to PF05670, Protein of unknown function DUF814, score 4.7e-08
862908000512	Signal peptide predicted for BMS0108 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.792 between residues 18 and 19
862908000513	Signal peptide predicted for BMS0109 by SignalP 2.0 HMM (Signal peptide probability 0.814) with cleavage site probability 0.785 between residues 21 and 22
862908000514	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908000515	Predicted SAM-dependent methyltransferases [General function prediction only]; Region: COG1092
862908000516	Middle domain of the SAM-dependent methyltransferase RlmI and related proteins; Region: RlmI_M_like; cd11572
862908000517	putative RNA binding site [nucleotide binding]; other site
862908000518	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908000519	S-adenosylmethionine binding site [chemical binding]; other site
862908000520	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000521	MoxR-like ATPases [General function prediction only]; Region: COG0714
862908000522	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908000523	Walker A motif; other site
862908000524	ATP binding site [chemical binding]; other site
862908000525	Walker B motif; other site
862908000526	arginine finger; other site
862908000527	HMMPfam hit to PF07726, , score 1e-81
862908000528	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000529	Protein of unknown function DUF58; Region: DUF58; pfam01882
862908000530	Signal peptide predicted for BMS0113 by SignalP 2.0 HMM (Signal peptide probability 0.918) with cleavage site probability 0.857 between residues 18 and 19
862908000531	1 probable transmembrane helix predicted for BMS0113 by TMHMM2.0 at aa 148-167
862908000532	PS00037 Myb DNA-binding domain repeat signature 1.
862908000533	Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057
862908000534	metal ion-dependent adhesion site (MIDAS); other site
862908000535	This region similar to an operon from Bacteroides fragalis associated wih aerotolerance
862908000536	3 probable transmembrane helices predicted for BMS0114 by TMHMM2.0 at aa 13-30, 50-69 and 301-318
862908000537	HMMPfam hit to PF00092, von Willebrand factor, type A, score 7.9e-30
862908000538	Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cd00198
862908000539	metal ion-dependent adhesion site (MIDAS); other site
862908000540	2 probable transmembrane helices predicted for BMS0115 by TMHMM2.0 at aa 5-23 and 296-318
862908000541	HMMPfam hit to PF00092, von Willebrand factor, type A, score 0.00014
862908000542	Oxygen tolerance; Region: BatD; pfam13584
862908000543	Signal peptide predicted for BMS0116 by SignalP 2.0 HMM (Signal peptide probability 0.968) with cleavage site probability 0.845 between residues 31 and 32
862908000544	2 probable transmembrane helices predicted for BMS0116 by TMHMM2.0 at aa 17-39 and 445-467
862908000545	bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed; Region: PRK05627
862908000546	FAD synthetase, N-terminal domain of the bifunctional enzyme; Region: FAD_synthetase_N; cd02064
862908000547	active site
862908000548	Riboflavin kinase; Region: Flavokinase; smart00904
862908000549	HMMPfam hit to PF06574, Riboflavin kinase / FAD synthetase, score 7.6e-40
862908000550	HMMPfam hit to PF01687, Riboflavin kinase / FAD synthetase, score 8.9e-52
862908000551	Shikimate 5-dehydrogenase [Amino acid transport and metabolism]; Region: AroE; COG0169
862908000552	Shikimate dehydrogenase substrate binding domain; Region: Shikimate_dh_N; pfam08501
862908000553	NAD(P) binding domain of Shikimate dehydrogenase; Region: NAD_bind_Shikimate_DH; cd01065
862908000554	shikimate binding site; other site
862908000555	NAD(P) binding site [chemical binding]; other site
862908000556	HMMPfam hit to PF01488, Shikimate/quinate 5-dehydrogenase, score 5.8e-07
862908000557	type IV-A pilus assembly ATPase PilB; Region: type_IV_pilB; TIGR02538
862908000558	Type II secretion system (T2SS), protein E, N-terminal domain; Region: T2SE_Nter; pfam05157
862908000559	PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129
862908000560	Walker A motif; other site
862908000561	ATP binding site [chemical binding]; other site
862908000562	Walker B motif; other site
862908000563	HMMPfam hit to PF05157, General secretory system II, protein E, N-terminal, score 0.00023
862908000564	HMMPfam hit to PF00437, Bacterial type II secretion system protein E, score 1.5e-117
862908000565	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000566	PS00662 Bacterial type II secretion system protein E signature.
862908000567	Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilT; COG2805
862908000568	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
862908000569	Walker A motif; other site
862908000570	ATP binding site [chemical binding]; other site
862908000571	Walker B motif; other site
862908000572	HMMPfam hit to PF00437, Bacterial type II secretion system protein E, score 3.4e-22
862908000573	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000574	PS00662 Bacterial type II secretion system protein E signature.
862908000575	Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulF; COG1459
862908000576	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
862908000577	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
862908000578	HMMPfam hit to PF00482, Bacterial type II secretion system protein, score 4.2e-24
862908000579	PS00874 Bacterial type II secretion system protein F signature.
862908000580	3 probable transmembrane helices predicted for BMS0121 by TMHMM2.0 at aa 172-194, 222-244 and 378-400
862908000581	HMMPfam hit to PF00482, Bacterial type II secretion system protein, score 6.3e-22
862908000582	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908000583	Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulG; COG2165
862908000584	Type IV pilin N-term methylation site GFxxxE; Region: N_methyl_2; pfam13544
862908000585	Type IV pilin PilA; Region: Pilin_PilA; pfam14245
862908000586	PS00409 Prokaryotic N-terminal methylation site.
862908000587	HMMPfam hit to PF00114, Fimbrial protein pilin, score 5.7e-07
862908000588	1 probable transmembrane helix predicted for BMS0122 by TMHMM2.0 at aa 10-32
862908000589	1 probable transmembrane helix predicted for BMS0123 by TMHMM2.0 at aa 4-26
862908000590	Signal peptide predicted for BMS0123 by SignalP 2.0 HMM (Signal peptide probability 0.924) with cleavage site probability 0.690 between residues 22 and 23
862908000591	ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131
862908000592	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
862908000593	Walker A/P-loop; other site
862908000594	ATP binding site [chemical binding]; other site
862908000595	Q-loop/lid; other site
862908000596	ABC transporter signature motif; other site
862908000597	Walker B; other site
862908000598	D-loop; other site
862908000599	H-loop/switch region; other site
862908000600	HMMPfam hit to PF00005, ABC transporter, score 2.3e-47
862908000601	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000602	PS00211 ABC transporters family signature.
862908000603	Signal peptide predicted for BMS0125 by SignalP 2.0 HMM (Signal peptide probability 0.741) with cleavage site probability 0.440 between residues 37 and 38
862908000604	6 probable transmembrane helices predicted for BMS0125 by TMHMM2.0 at aa 20-42, 52-74, 95-117, 132-154, 161-178 and 226-248
862908000605	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000606	Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: PulO; COG1989
862908000607	Bacterial Peptidase A24 N-terminal domain; Region: DiS_P_DiS; pfam06750
862908000608	Type IV leader peptidase family; Region: Peptidase_A24; pfam01478
862908000609	Signal peptide predicted for BMS0126 by SignalP 2.0 HMM (Signal peptide probability 0.728) with cleavage site probability 0.606 between residues 21 and 22
862908000610	8 probable transmembrane helices predicted for BMS0126 by TMHMM2.0 at aa 5-24, 45-62, 72-91, 98-120, 124-143, 148-170, 185-214 and 227-246
862908000611	HMMPfam hit to PF06750, Peptidase A24A, N-terminal, score 1.9e-40
862908000612	HMMPfam hit to PF01478, Peptidase A24A, prepilin type IV, score 2.9e-12
862908000613	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908000614	Competence protein A; Region: Competence_A; pfam11104
862908000615	Cell division protein FtsA; Region: FtsA; pfam14450
862908000616	Fimbrial assembly protein (PilN); Region: PilN; pfam05137
862908000617	HMMPfam hit to PF05137, Fimbrial assembly, score 9.9e-05
862908000618	Pilus assembly protein, PilO; Region: PilO; cl01234
862908000619	Signal peptide predicted for BMS0130 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.588 between residues 17 and 18
862908000620	type IV pilus secretin (or competence protein) PilQ; Region: IV_pilus_PilQ; TIGR02515
862908000621	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
862908000622	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
862908000623	Signal peptide predicted for BMS0131 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.998 between residues 23 and 24
862908000624	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
862908000625	HMMPfam hit to PF03958, NolW-like, score 1.2e-11
862908000626	HMMPfam hit to PF00263, Bacterial type II and III secretion system protein, score 3.6e-51
862908000627	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908000628	TPR motif; other site
862908000629	binding surface
862908000630	HMMPfam hit to PF07719, , score 0.98; PF07719, Tetratricopeptide repeat
862908000631	HMMPfam hit to PF07719, , score 0.46; PF07719, Tetratricopeptide repeat
862908000632	Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway...; Region: DHQase_II; cd00466
862908000633	Dehydroquinase class II; Region: DHquinase_II; pfam01220
862908000634	trimer interface [polypeptide binding]; other site
862908000635	active site
862908000636	dimer interface [polypeptide binding]; other site
862908000637	HMMPfam hit to PF01220, Dehydroquinase, class II, score 4.5e-47
862908000638	PS01029 Dehydroquinase class II signature.
862908000639	Elongation factor P (EF-P) KOW-like domain; Region: EFP_N; pfam08207
862908000640	elongation factor P; Validated; Region: PRK00529
862908000641	S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_1; cd04470
862908000642	RNA binding site [nucleotide binding]; other site
862908000643	S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_2; cd05794
862908000644	RNA binding site [nucleotide binding]; other site
862908000645	HMMPfam hit to PF01132, Elongation factor P (EF-P), score 6.7e-69
862908000646	PS01275 Elongation factor P signature.
862908000647	acetyl-CoA carboxylase, biotin carboxyl carrier protein; Region: BCCP; TIGR00531
862908000648	The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase; Region: biotinyl_domain; cd06850
862908000649	carboxyltransferase (CT) interaction site; other site
862908000650	biotinylation site [posttranslational modification]; other site
862908000651	HMMPfam hit to PF00364, Biotin/lipoyl attachment, score 8.1e-30
862908000652	acetyl-CoA carboxylase biotin carboxylase subunit; Validated; Region: PRK08591
862908000653	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
862908000654	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908000655	Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; smart00878
862908000656	HMMPfam hit to PF00289, Carbamoyl-phosphate synthetase large chain, N-terminal, score 4e-52
862908000657	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain, ATP-binding, score 5.2e-84
862908000658	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
862908000659	HMMPfam hit to PF02785, Biotin carboxylase, C-terminal, score 2e-51
862908000660	HMMPfam hit to PF07719, , score 2.7; PF07719, Tetratricopeptide repeat
862908000661	HMMPfam hit to PF07719, , score 0.093; PF07719, Tetratricopeptide repeat
862908000662	Family of unknown function (DUF490); Region: DUF490; pfam04357
862908000663	Signal peptide predicted for BMS0139 by SignalP 2.0 HMM (Signal peptide probability 0.980) with cleavage site probability 0.350 between residues 28 and 29
862908000664	1 probable transmembrane helix predicted for BMS0139 by TMHMM2.0 at aa 7-26
862908000665	HMMPfam hit to PF04357, Protein of unknown function DUF490, score 5e-06
862908000666	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
862908000667	outer membrane protein assembly complex, YaeT protein; Region: OM_YaeT; TIGR03303
862908000668	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
862908000669	Surface antigen; Region: Bac_surface_Ag; pfam01103
862908000670	Signal peptide predicted for BMS0140 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.635 between residues 21 and 22
862908000671	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
862908000672	HMMPfam hit to PF07244, Surface antigen variable number, score 0.00042
862908000673	HMMPfam hit to PF07244, Surface antigen variable number, score 1.2
862908000674	HMMPfam hit to PF07244, Surface antigen variable number, score 0.2
862908000675	HMMPfam hit to PF07244, Surface antigen variable number, score 0.00021
862908000676	HMMPfam hit to PF01103, Bacterial surface antigen (D15), score 8.3e-07
862908000677	Ribosomal protein L13.  Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the...; Region: Ribosomal_L13; cd00392
862908000678	23S rRNA interface [nucleotide binding]; other site
862908000679	L3 interface [polypeptide binding]; other site
862908000680	HMMPfam hit to PF00572, Ribosomal protein L13, score 3.6e-69
862908000681	PS00783 Ribosomal protein L13 signature.
862908000682	30S ribosomal protein S9; Reviewed; Region: rpsI; PRK00132
862908000683	HMMPfam hit to PF00380, Ribosomal protein S9, score 1.9e-54
862908000684	PS00360 Ribosomal protein S9 signature.
862908000685	Excinuclease ATPase subunit [DNA replication, recombination, and repair]; Region: UvrA; COG0178
862908000686	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908000687	Walker A/P-loop; other site
862908000688	ATP binding site [chemical binding]; other site
862908000689	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908000690	ABC transporter signature motif; other site
862908000691	Walker B; other site
862908000692	D-loop; other site
862908000693	H-loop/switch region; other site
862908000694	Zinc finger domain of DnaJ and HSP40; Region: DnaJ_zf; cd10719
862908000695	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908000696	ABC transporter signature motif; other site
862908000697	Walker B; other site
862908000698	D-loop; other site
862908000699	H-loop/switch region; other site
862908000700	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000701	PS00211 ABC transporters family signature.
862908000702	Signal peptide predicted for BMS0144 by SignalP 2.0 HMM (Signal peptide probability 0.961) with cleavage site probability 0.876 between residues 18 and 19
862908000703	2 probable transmembrane helices predicted for BMS0144 by TMHMM2.0 at aa 5-24 and 222-239
862908000704	Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which...; Region: ZnMc; cl00064
862908000705	active site
862908000706	Carboxypeptidase regulatory-like domain; Region: CarboxypepD_reg; pfam13620
862908000707	Signal peptide predicted for BMS0145 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.901 between residues 18 and 19
862908000708	HMMPfam hit to PF00413, Peptidase M10A and M12B, matrixin and adamalysin, score 3.7e-08
862908000709	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908000710	Signal peptide predicted for BMS0146 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 between residues 19 and 20
862908000711	ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]; Region: Lon; COG0466
862908000712	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908000713	Walker A motif; other site
862908000714	ATP binding site [chemical binding]; other site
862908000715	Walker B motif; other site
862908000716	arginine finger; other site
862908000717	Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362
862908000718	HMMPfam hit to PF02190, Peptidase S16, lon N-terminal, score 1.3e-07
862908000719	HMMPfam hit to PF00004, AAA ATPase, central region, score 9.1e-45
862908000720	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000721	HMMPfam hit to PF05362, Peptidase S16, lon C-terminal, score 6.9e-107
862908000722	PS01046 ATP-dependent serine proteases, lon family, serine active site.
862908000723	DNA-directed RNA polymerase subunit omega; Reviewed; Region: rpoZ; PRK00392
862908000724	HMMPfam hit to PF01192, RNA polymerase Rpb6, score 2.7e-10
862908000725	Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]; Region: FAA1; COG1022
862908000726	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
862908000727	Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases; Region: VL_LC_FACS_like; cd05907
862908000728	acyl-activating enzyme (AAE) consensus motif; other site
862908000729	putative AMP binding site [chemical binding]; other site
862908000730	putative active site [active]
862908000731	putative CoA binding site [chemical binding]; other site
862908000732	HMMPfam hit to PF00501, AMP-dependent synthetase and ligase, score 1.5e-69
862908000733	PS00455 Putative AMP-binding domain signature.
862908000734	1 probable transmembrane helix predicted for BMS0152 by TMHMM2.0 at aa 20-42
862908000735	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
862908000736	The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like; cl01709
862908000737	HMMPfam hit to PF00496, Bacterial extracellular solute-binding protein, family 5, score 2.6e-64
862908000738	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908000739	recombination regulator RecX; Reviewed; Region: recX; PRK00117
862908000740	recombinase A; Provisional; Region: recA; PRK09354
862908000741	RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange; Region: recA; cd00983
862908000742	hexamer interface [polypeptide binding]; other site
862908000743	Walker A motif; other site
862908000744	ATP binding site [chemical binding]; other site
862908000745	Walker B motif; other site
862908000746	HMMPfam hit to PF00154, RecA bacterial DNA recombination protein, score 3.1e-234
862908000747	PS00321 recA signature.
862908000748	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000749	Phosphatidylglycerophosphatase A; a bacterial membrane-associated enzyme involved in lipid metabolism; Region: PgpA; cd06971
862908000750	tetramer interfaces [polypeptide binding]; other site
862908000751	binuclear metal-binding site [ion binding]; other site
862908000752	4 probable transmembrane helices predicted for BMS0156 by TMHMM2.0 at aa 12-31, 46-68, 102-119 and 139-161
862908000753	HMMPfam hit to PF04608, Phosphatidylglycerophosphatase A, score 3.3e-25
862908000754	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908000755	Signal peptide predicted for BMS0156 by SignalP 2.0 HMM (Signal peptide probability 0.886) with cleavage site probability 0.580 between residues 48 and 49
862908000756	RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; Region: Rel-Spo_like; cl11966
862908000757	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
862908000758	methyl indole-3-acetate methyltransferase; Region: PLN02211; cl17657
862908000759	HMMPfam hit to PF00561, Alpha/beta hydrolase fold, score 1.2e-17
862908000760	ATP-dependent DNA helicase RecG; Provisional; Region: PRK10917
862908000761	RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a...; Region: RecG_wedge_OBF; cd04488
862908000762	ssDNA binding site; other site
862908000763	generic binding surface II; other site
862908000764	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
862908000765	ATP binding site [chemical binding]; other site
862908000766	putative Mg++ binding site [ion binding]; other site
862908000767	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
862908000768	nucleotide binding region [chemical binding]; other site
862908000769	ATP-binding site [chemical binding]; other site
862908000770	HMMPfam hit to PF00271, Helicase, C-terminal, score 6.1e-20
862908000771	HMMPfam hit to PF00270, DEAD/DEAH box helicase, N-terminal, score 1.2e-27
862908000772	PS00435 Peroxidases proximal heme-ligand signature.
862908000773	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000774	PS00284 Serpins signature.
862908000775	HMMPfam hit to PF01336, OB-fold nucleic acid binding, score 0.12
862908000776	transcription elongation factor GreA; Reviewed; Region: greA; PRK00226
862908000777	Transcription elongation factor, N-terminal; Region: GreA_GreB_N; pfam03449
862908000778	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
862908000779	HMMPfam hit to PF01272, Prokaryotic transcription elongation factor GreA/GreB, score 5.4e-24
862908000780	PS00830 Prokaryotic transcription elongation factors signature 2.
862908000781	HMMPfam hit to PF03449, Prokaryotic transcription elongation factor GreA/GreB, score 3.3e-34
862908000782	1 probable transmembrane helix predicted for BMS0164 by TMHMM2.0 at aa 15-37
862908000783	Predicted unusual protein kinase [General function prediction only]; Region: AarF; COG0661
862908000784	ABC1 family; Region: ABC1; pfam03109
862908000785	Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: APH_ChoK_like; cd05120
862908000786	active site
862908000787	ATP binding site [chemical binding]; other site
862908000788	HMMPfam hit to PF03109, ABC-1, score 1.5e-40
862908000789	2 probable transmembrane helices predicted for BMS0166 by TMHMM2.0 at aa 512-534 and 541-563
862908000790	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl17182
862908000791	flagellin; Provisional; Region: PRK12802
862908000792	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
862908000793	Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700
862908000794	HMMPfam hit to PF00669, Flagellin, N-terminal, score 1.2e-49
862908000795	HMMPfam hit to PF00700, Flagellin, C-terminal, score 1.9e-27
862908000796	flagellin; Provisional; Region: PRK12802
862908000797	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
862908000798	Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700
862908000799	HMMPfam hit to PF00669, Flagellin, N-terminal, score 2.3e-51
862908000800	HMMPfam hit to PF00700, Flagellin, C-terminal, score 4.6e-29
862908000801	dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]; Region: RfbD; COG1091
862908000802	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908000803	NAD(P) binding site [chemical binding]; other site
862908000804	active site
862908000805	Flp/Fap pilin component; Region: Flp_Fap; cl01585
862908000806	1 probable transmembrane helix predicted for BMS0172 by TMHMM2.0 at aa 15-34
862908000807	1 probable transmembrane helix predicted for BMS0173 by TMHMM2.0 at aa 13-35
862908000808	HMMPfam hit to PF01478, Peptidase A24A, prepilin type IV, score 0.00034
862908000809	4 probable transmembrane helices predicted for BMS0174 by TMHMM2.0 at aa 26-45, 50-72, 97-119 and 140-162
862908000810	1 probable transmembrane helix predicted for BMS0175 by TMHMM2.0 at aa 15-37
862908000811	1 probable transmembrane helix predicted for BMS0176 by TMHMM2.0 at aa 4-26
862908000812	1 probable transmembrane helix predicted for BMS0177 by TMHMM2.0 at aa 21-43
862908000813	Flp pilus assembly protein CpaB [Intracellular trafficking and secretion]; Region: CpaB; COG3745
862908000814	SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus assembly CpaB; Region: SAF_CpaB_FlgA_like; cd11614
862908000815	Signal peptide predicted for BMS0178 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.925 between residues 22 and 23
862908000816	1 probable transmembrane helix predicted for BMS0178 by TMHMM2.0 at aa 5-24
862908000817	HMMPfam hit to PF06981, Flp pilus assembly CpaB, score 2.8e-12
862908000818	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
862908000819	HMMPfam hit to PF00263, Bacterial type II and III secretion system protein, score 1.3e-09
862908000820	AAA domain; Region: AAA_31; pfam13614
862908000821	Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]; Region: CpaF; COG4962
862908000822	Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to...; Region: VirB11-like_ATPase; cd01130
862908000823	ATP binding site [chemical binding]; other site
862908000824	Walker A motif; other site
862908000825	hexamer interface [polypeptide binding]; other site
862908000826	Walker B motif; other site
862908000827	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000828	PS00191 Cytochrome b5 family, heme-binding domain signature.
862908000829	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000830	HMMPfam hit to PF00437, Bacterial type II secretion system protein E, score 4.8e-102
862908000831	PS00227 Tubulin subunits alpha, beta, and gamma signature.
862908000832	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000833	Flp pilus assembly protein TadB [Intracellular trafficking and secretion]; Region: TadB; COG4965
862908000834	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
862908000835	5 probable transmembrane helices predicted for BMS0181 by TMHMM2.0 at aa 4-26, 63-85, 89-111, 233-255 and 270-292
862908000836	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908000837	HMMPfam hit to PF00482, Bacterial type II secretion system protein, score 1.6e-12
862908000838	Signal peptide predicted for BMS0182 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.941 between residues 19 and 20
862908000839	HMMPfam hit to PF05593, YD repeat, score 2
862908000840	HMMPfam hit to PF05593, YD repeat, score 3.1
862908000841	HMMPfam hit to PF05593, YD repeat, score 1.1
862908000842	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000843	HMMPfam hit to PF05593, YD repeat, score 3.4
862908000844	Signal peptide predicted for BMS0183 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 between residues 19 and 20
862908000845	Signal peptide predicted for BMS0184 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.966 between residues 22 and 23
862908000846	aldehyde dehydrogenase family protein; Provisional; Region: PTZ00381
862908000847	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
862908000848	NAD(P) binding site [chemical binding]; other site
862908000849	catalytic residues [active]
862908000850	HMMPfam hit to PF00171, Aldehyde dehydrogenase, score 1.5e-36
862908000851	PS00687 Aldehyde dehydrogenases glutamic acid active site.
862908000852	PS00070 Aldehyde dehydrogenases cysteine active site.
862908000853	Signal peptide predicted for BMS0186 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 between residues 20 and 21
862908000854	FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784
862908000855	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908000856	active site
862908000857	phosphorylation site [posttranslational modification]
862908000858	intermolecular recognition site; other site
862908000859	dimerization interface [polypeptide binding]; other site
862908000860	HMMPfam hit to PF00072, Response regulator receiver, score 1.3e-25
862908000861	Dolichyl-phosphate-mannose-protein mannosyltransferase; Region: PMT_2; pfam13231
862908000862	7 probable transmembrane helices predicted for BMS0190 by TMHMM2.0 at aa 40-62, 89-108, 123-145, 157-179, 220-237, 244-266 and 276-293
862908000863	ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]; Region: Lon; COG0466
862908000864	Found in ATP-dependent protease La (LON); Region: LON; smart00464
862908000865	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908000866	Walker A motif; other site
862908000867	ATP binding site [chemical binding]; other site
862908000868	Walker B motif; other site
862908000869	arginine finger; other site
862908000870	Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362
862908000871	HMMPfam hit to PF05362, Peptidase S16, lon C-terminal, score 2.8e-125
862908000872	PS01046 ATP-dependent serine proteases, lon family, serine active site.
862908000873	HMMPfam hit to PF00004, AAA ATPase, central region, score 3.3e-47
862908000874	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000875	HMMPfam hit to PF02190, Peptidase S16, lon N-terminal, score 2.4e-33
862908000876	N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]; Region: GlmU; COG1207
862908000877	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
862908000878	active site
862908000879	N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two...; Region: LbH_GlmU_C; cd03353
862908000880	active site
862908000881	substrate binding site [chemical binding]; other site
862908000882	CoA binding site [chemical binding]; other site
862908000883	HMMPfam hit to PF00483, Nucleotidyl transferase, score 7.8e-09
862908000884	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 21
862908000885	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 0.081
862908000886	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 49
862908000887	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 22
862908000888	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 69
862908000889	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 8.4
862908000890	glucosamine--fructose-6-phosphate aminotransferase; Reviewed; Region: PRK00331
862908000891	Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans).  The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In...; Region: GFAT; cd00714
862908000892	glutaminase active site [active]
862908000893	SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008
862908000894	dimer interface [polypeptide binding]; other site
862908000895	active site
862908000896	SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009
862908000897	dimer interface [polypeptide binding]; other site
862908000898	active site
862908000899	HMMPfam hit to PF00310, Glutamine amidotransferase, class-II, score 3.3e-48
862908000900	HMMPfam hit to PF01380, Sugar isomerase (SIS), score 1.1e-15
862908000901	HMMPfam hit to PF01380, Sugar isomerase (SIS), score 6.3e-16
862908000902	ATP-dependent DNA helicase PcrA; Region: pcrA; TIGR01073
862908000903	Part of AAA domain; Region: AAA_19; pfam13245
862908000904	Family description; Region: UvrD_C_2; pfam13538
862908000905	HMMPfam hit to PF00580, UvrD/REP helicase, score 6.1e-179
862908000906	PS00017 ATP/GTP-binding site motif A (P-loop).
862908000907	AsmA-like C-terminal region; Region: AsmA_2; pfam13502
862908000908	Signal peptide predicted for BMS0196 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.919 between residues 28 and 29
862908000909	methylthioribose-1-phosphate isomerase; Reviewed; Region: mtnA; PRK05720
862908000910	S-methyl-5-thioribose-1-phosphate isomerase; Region: salvage_mtnA; TIGR00512
862908000911	HMMPfam hit to PF01008, Initiation factor 2B, score 1.9e-78
862908000912	exopolyphosphatase; Region: exo_poly_only; TIGR03706
862908000913	Ppx/GppA phosphatase family; Region: Ppx-GppA; pfam02541
862908000914	HMMPfam hit to PF02541, Ppx/GppA phosphatase, score 3.9e-23
862908000915	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
862908000916	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
862908000917	ligand binding site [chemical binding]; other site
862908000918	flexible hinge region; other site
862908000919	HMMPfam hit to PF00027, Cyclic nucleotide-binding, score 9.9e-23
862908000920	FliG C-terminal domain; Region: FliG_C; pfam01706
862908000921	major vault protein; Provisional; Region: PTZ00491
862908000922	putative acyltransferase; Provisional; Region: PRK05790
862908000923	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
862908000924	dimer interface [polypeptide binding]; other site
862908000925	active site
862908000926	HMMPfam hit to PF00108, Thiolase, score 3.4e-94
862908000927	PS00098 Thiolases acyl-enzyme intermediate signature.
862908000928	HMMPfam hit to PF02803, Thiolase, score 2.9e-63
862908000929	PS00737 Thiolases signature 2.
862908000930	PS00099 Thiolases active site.
862908000931	1 probable transmembrane helix predicted for BMS0203 by TMHMM2.0 at aa 207-226
862908000932	Signal peptide predicted for BMS0204 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.506 between residues 26 and 27
862908000933	4 probable transmembrane helices predicted for BMS0205 by TMHMM2.0 at aa 7-26, 36-58, 108-127 and 137-159
862908000934	Putative RNA methyltransferase; Region: Methyltrn_RNA_3; cl12077
862908000935	HEAT repeats; Region: HEAT_2; pfam13646
862908000936	HEAT repeats; Region: HEAT_2; pfam13646
862908000937	1 probable transmembrane helix predicted for BMS0206 by TMHMM2.0 at aa 30-52
862908000938	HMMPfam hit to PF02985, HEAT, score 0.38
862908000939	HMMPfam hit to PF02985, HEAT, score 4.4
862908000940	Rieske Fe-S protein [Energy production and conversion]; Region: QcrA; COG0723
862908000941	Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes; Region: Rieske; cl00938
862908000942	iron-sulfur cluster [ion binding]; other site
862908000943	[2Fe-2S] cluster binding site [ion binding]; other site
862908000944	Signal peptide predicted for BMS0207 by SignalP 2.0 HMM (Signal peptide probability 0.942) with cleavage site probability 0.284 between residues 38 and 39
862908000945	1 probable transmembrane helix predicted for BMS0207 by TMHMM2.0 at aa 13-35
862908000946	HMMPfam hit to PF00355, Rieske [2Fe-2S] region, score 1.2e-11
862908000947	PS00199 Rieske iron-sulfur protein signature 1.
862908000948	PS00200 Rieske iron-sulfur protein signature 2.
862908000949	interchain domain interface [polypeptide binding]; other site
862908000950	intrachain domain interface; other site
862908000951	Cytochrome b (N-terminus)/b6/petB:  Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria; Region: Cytochrome_b_N; cl00859
862908000952	Cytochrome b subunit of the bc complex [Energy production and conversion]; Region: QcrB; COG1290
862908000953	heme bH binding site [chemical binding]; other site
862908000954	Qi binding site; other site
862908000955	heme bL binding site [chemical binding]; other site
862908000956	Qo binding site; other site
862908000957	HMMPfam hit to PF00033, Cytochrome b/b6, N-terminal, score 2.3e-23
862908000958	4 probable transmembrane helices predicted for BMS0208 by TMHMM2.0 at aa 59-81, 112-129, 142-164 and 223-245
862908000959	8 probable transmembrane helices predicted for BMS0209 by TMHMM2.0 at aa 15-32, 37-59, 69-86, 118-140, 171-193, 214-236, 280-302 and 322-344
862908000960	Cytochrome c554 and c-prime; Region: Cytochrome_C554; pfam13435
862908000961	Cytochrome C oxidase, cbb3-type, subunit III; Region: Cytochrome_CBB3; pfam13442
862908000962	Cytochrome c; Region: Cytochrom_C; pfam00034
862908000963	1 probable transmembrane helix predicted for BMS0210 by TMHMM2.0 at aa 19-36
862908000964	PS00190 Cytochrome c family heme-binding site signature.
862908000965	PS00190 Cytochrome c family heme-binding site signature.
862908000966	PS00190 Cytochrome c family heme-binding site signature.
862908000967	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
862908000968	PS00190 Cytochrome c family heme-binding site signature.
862908000969	HMMPfam hit to PF00034, Cytochrome c, class I, score 0.0058
862908000970	PS00190 Cytochrome c family heme-binding site signature.
862908000971	PS00215 Mitochondrial energy transfer proteins signature.
862908000972	PS00190 Cytochrome c family heme-binding site signature.
862908000973	PS00190 Cytochrome c family heme-binding site signature.
862908000974	PS00190 Cytochrome c family heme-binding site signature.
862908000975	Heme-copper oxidase subunit III.  Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The...; Region: Heme_Cu_Oxidase_III_like; cl00211
862908000976	Subunit I/III interface [polypeptide binding]; other site
862908000977	HMMPfam hit to PF00510, Cytochrome c oxidase, subunit III, score 3.2e-10
862908000978	5 probable transmembrane helices predicted for BMS0211 by TMHMM2.0 at aa 32-54, 69-91, 103-125, 145-167 and 187-209
862908000979	1 probable transmembrane helix predicted for BMS0212 by TMHMM2.0 at aa 10-28
862908000980	Protein of unknown function (DUF420); Region: DUF420; pfam04238
862908000981	5 probable transmembrane helices predicted for BMS0213 by TMHMM2.0 at aa 13-32, 47-69, 76-98, 118-140 and 153-175
862908000982	HMMPfam hit to PF04238, Protein of unknown function DUF420, score 3.9e-37
862908000983	Signal peptide predicted for BMS0214 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.999 between residues 36 and 37
862908000984	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
862908000985	Tryptophan 2,3-dioxygenase; Region: Trp_dioxygenase; cl03994
862908000986	HMMPfam hit to PF03301, Tryptophan 2,3-dioxygenase, score 1.2e-101
862908000987	Cytochrome oxidase assembly protein; Region: COX15-CtaA; pfam02628
862908000988	Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]; Region: CtaA; COG1612
862908000989	HMMPfam hit to PF02628, Cytochrome oxidase assembly, score 9.5e-09
862908000990	Signal peptide predicted for BMS0217 by SignalP 2.0 HMM (Signal peptide probability 0.619) with cleavage site probability 0.276 between residues 39 and 40
862908000991	8 probable transmembrane helices predicted for BMS0217 by TMHMM2.0 at aa 13-35, 82-104, 117-139, 144-166, 187-206, 231-250, 263-285 and 295-314
862908000992	Cytochrome oxidase assembly protein; Region: COX15-CtaA; pfam02628
862908000993	Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]; Region: CtaA; COG1612
862908000994	protoheme IX farnesyltransferase; Provisional; Region: PRK04375
862908000995	UbiA prenyltransferase family; Region: UbiA; pfam01040
862908000996	HMMPfam hit to PF02628, Cytochrome oxidase assembly, score 1.1e-06
862908000997	17 probable transmembrane helices predicted for BMS0218 by TMHMM2.0 at aa 7-29, 54-73, 85-107, 112-134, 164-186, 224-246, 258-280, 284-306, 337-356, 360-382, 403-425, 429-448, 455-474, 484-506, 530-547, 552-574 and 587-606
862908000998	HMMPfam hit to PF01040, UbiA prenyltransferase, score 2.3e-52
862908000999	Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]; Region: CyoA; COG1622
862908001000	Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; pfam00116
862908001001	2 probable transmembrane helices predicted for BMS0219 by TMHMM2.0 at aa 40-62 and 82-101
862908001002	HMMPfam hit to PF00116, Cytochrome c oxidase, subunit II, score 9.6e-14
862908001003	PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature.
862908001004	Heme/copper-type cytochrome/quinol oxidases, subunit 1 [Energy production and conversion]; Region: CyoB; COG0843
862908001005	cytochrome c oxidase, subunit I; Region: CtaD_CoxA; TIGR02891
862908001006	HMMPfam hit to PF00115, Cytochrome c oxidase, subunit I, score 2.1e-167
862908001007	14 probable transmembrane helices predicted for BMS0220 by TMHMM2.0 at aa 32-54, 87-109, 121-143, 147-169, 176-198, 213-235, 242-264, 268-287, 299-321, 336-358, 371-393, 408-430, 443-465 and 485-507
862908001008	PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature.
862908001009	Heme-copper oxidase subunit III.  Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The...; Region: Heme_Cu_Oxidase_III_like; cd00386
862908001010	Subunit I/III interface [polypeptide binding]; other site
862908001011	Signal peptide predicted for BMS0221 by SignalP 2.0 HMM (Signal peptide probability 0.865) with cleavage site probability 0.472 between residues 37 and 38
862908001012	HMMPfam hit to PF00510, Cytochrome c oxidase, subunit III, score 0.0017
862908001013	5 probable transmembrane helices predicted for BMS0221 by TMHMM2.0 at aa 21-43, 63-83, 96-116, 136-158 and 179-196
862908001014	Cytochrome c; Region: Cytochrom_C; cl11414
862908001015	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
862908001016	Cytochrome C oxidase, cbb3-type, subunit III; Region: Cytochrome_CBB3; pfam13442
862908001017	Signal peptide predicted for BMS0222 by SignalP 2.0 HMM (Signal peptide probability 0.883) with cleavage site probability 0.543 between residues 21 and 22
862908001018	HMMPfam hit to PF00034, Cytochrome c, class I, score 0.0055
862908001019	PS00190 Cytochrome c family heme-binding site signature.
862908001020	Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]; Region: COG1999
862908001021	SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c...; Region: SCO; cd02968
862908001022	Cu(I) binding site [ion binding]; other site
862908001023	1 probable transmembrane helix predicted for BMS0223 by TMHMM2.0 at aa 13-35
862908001024	HMMPfam hit to PF02630, Electron transport protein SCO1/SenC, score 1.2e-10
862908001025	3 probable transmembrane helices predicted for BMS0224 by TMHMM2.0 at aa 12-31, 36-58 and 71-88
862908001026	Bacterial extracellular solute-binding protein; Region: SBP_bac_8; pfam13416
862908001027	ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: AfuA; COG1840
862908001028	HMMPfam hit to PF01547, Bacterial extracellular solute-binding protein, family 1, score 1.1e-06
862908001029	1 probable transmembrane helix predicted for BMS0225 by TMHMM2.0 at aa 9-31
862908001030	Signal peptide predicted for BMS0225 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 between residues 21 and 22
862908001031	cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the...; Region: cyclophilin; cd00317
862908001032	active site
862908001033	HMMPfam hit to PF00160, Peptidyl-prolyl cis-trans isomerase, cyclophilin type, score 2.2e-35
862908001034	FtsK/SpoIIIE family; Region: FtsK_SpoIIIE; pfam01580
862908001035	Ftsk gamma domain; Region: Ftsk_gamma; pfam09397
862908001036	Signal peptide predicted for BMS0228 by SignalP 2.0 HMM (Signal peptide probability 0.680) with cleavage site probability 0.582 between residues 27 and 28
862908001037	5 probable transmembrane helices predicted for BMS0228 by TMHMM2.0 at aa 5-27, 47-81, 94-116, 126-145 and 459-481
862908001038	HMMPfam hit to PF01580, Cell divisionFtsK/SpoIIIE protein, score 4e-71
862908001039	PS00017 ATP/GTP-binding site motif A (P-loop).
862908001040	Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of...; Region: RPS2; cd01425
862908001041	rRNA interaction site [nucleotide binding]; other site
862908001042	S8 interaction site; other site
862908001043	putative laminin-1 binding site; other site
862908001044	PS00962 Ribosomal protein S2 signature 1.
862908001045	HMMPfam hit to PF00318, Ribosomal protein S2, score 5.7e-97
862908001046	PS00963 Ribosomal protein S2 signature 2.
862908001047	elongation factor Ts; Provisional; Region: tsf; PRK09377
862908001048	UBA/TS-N domain; Region: UBA; pfam00627
862908001049	Elongation factor TS; Region: EF_TS; pfam00889
862908001050	Elongation factor TS; Region: EF_TS; pfam00889
862908001051	HMMPfam hit to PF00627, Ubiquitin-associated, score 7.7e-14
862908001052	PS01126 Elongation factor Ts signature 1.
862908001053	HMMPfam hit to PF00889, Elongation factor Ts, score 1.2e-69
862908001054	PS01127 Elongation factor Ts signature 2.
862908001055	UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and...; Region: AAK_UMPK-PyrH-Ec; cd04254
862908001056	putative nucleotide binding site [chemical binding]; other site
862908001057	uridine monophosphate binding site [chemical binding]; other site
862908001058	homohexameric interface [polypeptide binding]; other site
862908001059	HMMPfam hit to PF00696, Aspartate/glutamate/uridylate kinase, score 1.2e-58
862908001060	ribosome recycling factor; Reviewed; Region: frr; PRK00083
862908001061	Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation.  Thus ribosomes are "recycled" and ready for another...; Region: RRF; cd00520
862908001062	hinge region; other site
862908001063	HMMPfam hit to PF01765, Ribosome recycling factor, score 3e-84
862908001064	Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl...; Region: CIS_IPPS; cl00230
862908001065	Putative undecaprenyl diphosphate synthase; Region: Prenyltransf; pfam01255
862908001066	catalytic residue [active]
862908001067	putative FPP diphosphate  binding site; other site
862908001068	putative FPP binding hydrophobic cleft; other site
862908001069	dimer interface [polypeptide binding]; other site
862908001070	putative IPP diphosphate binding site; other site
862908001071	HMMPfam hit to PF01255, Di-trans-poly-cis-decaprenylcistransferase, score 3.7e-89
862908001072	PS01066 Undecaprenyl pyrophosphate synthetase family signature.
862908001073	CDP-diglyceride synthetase [Lipid metabolism]; Region: CdsA; COG0575
862908001074	CDP-diglyceride synthase; Provisional; Region: cdsA; PRK11624
862908001075	Signal peptide predicted for BMS0234 by SignalP 2.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.807 between residues 31 and 32
862908001076	HMMPfam hit to PF01148, Phosphatidate cytidylyltransferase, score 8.4e-48
862908001077	8 probable transmembrane helices predicted for BMS0234 by TMHMM2.0 at aa 12-41, 56-75, 80-102, 117-136, 141-163, 183-203, 210-227 and 256-273
862908001078	PS01315 Phosphatidate cytidylyltransferase signature.
862908001079	RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163
862908001080	active site
862908001081	PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated; Region: PDZ; cl00117
862908001082	PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated; Region: PDZ; cl00117
862908001083	RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163
862908001084	putative substrate binding region [chemical binding]; other site
862908001085	4 probable transmembrane helices predicted for BMS0235 by TMHMM2.0 at aa 5-27, 98-120, 447-469 and 497-519
862908001086	HMMPfam hit to PF02163, Peptidase M50, score 1.1e-63
862908001087	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908001088	HMMPfam hit to PF00595, PDZ/DHR/GLGF, score 0.0061
862908001089	tRNA threonylcarbamoyl adenosine modification protein YeaZ; Region: T6A_YeaZ; TIGR03725
862908001090	Phosphatidylserine decarboxylase; Region: PS_Dcarbxylase; cl03656
862908001091	Signal peptide predicted for BMS0237 by SignalP 2.0 HMM (Signal peptide probability 0.945) with cleavage site probability 0.765 between residues 33 and 34
862908001092	CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; pfam01066
862908001093	CDP-diacylglycerol--serine O-phosphatidyltransferase; Region: pssA; TIGR00473
862908001094	5 probable transmembrane helices predicted for BMS0238 by TMHMM2.0 at aa 28-50, 113-130, 150-172, 177-199 and 212-234
862908001095	HMMPfam hit to PF01066, CDP-alcohol phosphatidyltransferase, score 2.5e-22
862908001096	PS00379 CDP-alcohol phosphatidyltransferases signature.
862908001097	Signal peptide predicted for BMS0239 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 between residues 30 and 31
862908001098	tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021
862908001099	Eukaryotic and bacterial pseudouridine synthases similar to E.  coli TruA; Region: PseudoU_synth_EcTruA; cd02570
862908001100	dimerization interface 3.5A [polypeptide binding]; other site
862908001101	active site
862908001102	HMMPfam hit to PF01416, tRNA pseudouridine synthase, score 3.4e-23
862908001103	HMMPfam hit to PF01416, tRNA pseudouridine synthase, score 9.4e-05
862908001104	trigger factor; Region: tig; TIGR00115
862908001105	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
862908001106	Bacterial trigger factor protein (TF) C-terminus; Region: Trigger_C; pfam05698
862908001107	HMMPfam hit to PF05697, Bacterial trigger factor, N-terminal, score 4.6e-40
862908001108	HMMPfam hit to PF00254, Peptidylprolyl isomerase, FKBP-type, score 1.1e-17
862908001109	HMMPfam hit to PF05698, Bacterial trigger factor, C-terminal, score 1.4e-35
862908001110	homogentisate 1,2-dioxygenase; Region: HgmA; cl17306
862908001111	HMMPfam hit to PF04209, Homogentisate 1,2-dioxygenase, score 6.4e-38
862908001112	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]; Region: MhpD; COG0179
862908001113	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; pfam01557
862908001114	HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) hydrolase, score 3.3e-27
862908001115	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908001116	histidinol-phosphate aminotransferase; Validated; Region: PRK02731
862908001117	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
862908001118	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908001119	homodimer interface [polypeptide binding]; other site
862908001120	catalytic residue [active]
862908001121	HMMPfam hit to PF00155, Aminotransferase, class I and II, score 1.7e-22
862908001122	PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site.
862908001123	Domain of unknown function (DUF309); Region: DUF309; pfam03745
862908001124	HMMPfam hit to PF03745, Protein of unknown function DUF309, score 1.8e-13
862908001125	Etoposide-induced protein 2.4 (EI24); Region: EI24; cl01126
862908001126	4 probable transmembrane helices predicted for BMS0248 by TMHMM2.0 at aa 24-46, 74-96, 145-167 and 212-234
862908001127	HMMPfam hit to PF04401, Protein of unknown function DUF540, score 1.1e-12
862908001128	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
862908001129	valyl-tRNA synthetase; Reviewed; Region: valS; PRK05729
862908001130	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
862908001131	active site
862908001132	HIGH motif; other site
862908001133	nucleotide binding site [chemical binding]; other site
862908001134	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
862908001135	catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817
862908001136	active site
862908001137	KMSKS motif; other site
862908001138	Anticodon-binding domain of valyl tRNA synthetases; Region: Anticodon_Ia_Val; cd07962
862908001139	tRNA binding surface [nucleotide binding]; other site
862908001140	anticodon binding site; other site
862908001141	Valyl tRNA synthetase tRNA binding arm; Region: Val_tRNA-synt_C; pfam10458
862908001142	HMMPfam hit to PF00133, Aminoacyl-tRNA synthetase, class Ia, score 1.7e-231
862908001143	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
862908001144	Nucleoside-specific channel-forming protein, Tsx; Region: Channel_Tsx; cl04114
862908001145	Signal peptide predicted for BMS0252 by SignalP 2.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.946 between residues 19 and 20
862908001146	Signal peptide predicted for BMS0253 by SignalP 2.0 HMM (Signal peptide probability 0.853) with cleavage site probability 0.848 between residues 17 and 18
862908001147	Nitrate reductase gamma subunit; Region: Nitrate_red_gam; cl00959
862908001148	Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247
862908001149	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
862908001150	Cysteine-rich domain; Region: CCG; pfam02754
862908001151	Cysteine-rich domain; Region: CCG; pfam02754
862908001152	HMMPfam hit to PF02754, Protein of unknown function DUF224, score 6.9e-15
862908001153	HMMPfam hit to PF02754, Protein of unknown function DUF224, score 1e-09
862908001154	HMMPfam hit to PF00037, 4Fe-4S ferredoxin, iron-sulfur binding, score 0.00056
862908001155	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
862908001156	HMMPfam hit to PF00037, 4Fe-4S ferredoxin, iron-sulfur binding, score 0.0023
862908001157	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
862908001158	5 probable transmembrane helices predicted for BMS0256 by TMHMM2.0 at aa 20-37, 84-106, 119-141, 161-183 and 216-238
862908001159	5 probable transmembrane helices predicted for BMS0257 by TMHMM2.0 at aa 5-24, 36-55, 59-78, 99-121 and 146-168
862908001160	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cl00309
862908001161	Heat shock protein 33 (Hsp33):  Cytosolic protein that acts as a molecular chaperone under oxidative conditions.  In normal (reducing) cytosolic conditions, four conserved Cys residues are coordinated by a Zn ion. Under oxidative stress (such as heat...; Region: Hsp33; cl00236
862908001162	dimerization interface [polypeptide binding]; other site
862908001163	domain crossover interface; other site
862908001164	redox-dependent activation switch; other site
862908001165	HMMPfam hit to PF01430, Hsp33 protein, score 1.2e-05
862908001166	PD-(D/E)XK nuclease superfamily; Region: PDDEXK_1; pfam12705
862908001167	Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]; Region: UvrD; COG0210
862908001168	PD-(D/E)XK nuclease superfamily; Region: PDDEXK_1; pfam12705
862908001169	HMMPfam hit to PF00580, UvrD/REP helicase, score 2.4e-13
862908001170	PS00017 ATP/GTP-binding site motif A (P-loop).
862908001171	PS00422 Granins signature 1.
862908001172	Signal peptide predicted for BMS0262 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 22 and 23
862908001173	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
862908001174	Signal peptide predicted for BMS0263 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.544 between residues 26 and 27
862908001175	Tetratricopeptide repeat; Region: TPR_16; pfam13432
862908001176	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908001177	TPR motif; other site
862908001178	binding surface
862908001179	Signal peptide predicted for BMS0264 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.990 between residues 26 and 27
862908001180	HMMPfam hit to PF07719, , score 0.21; PF07719, Tetratricopeptide repeat
862908001181	HMMPfam hit to PF07719, , score 0.3; PF07719, Tetratricopeptide repeat
862908001182	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908001183	TPR motif; other site
862908001184	binding surface
862908001185	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908001186	binding surface
862908001187	TPR motif; other site
862908001188	Signal peptide predicted for BMS0265 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.488 between residues 20 and 21
862908001189	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908001190	HMMPfam hit to PF07719, , score 0.028; PF07719, Tetratricopeptide repeat; HMMPfam hit to PF00515, TPR repeat, score 0.012
862908001191	HMMPfam hit to PF00515, TPR repeat, score 0.01; HMMPfam hit to PF07719, , score 0.19; PF07719, Tetratricopeptide repeat
862908001192	Signal peptide predicted for BMS0266 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.941 between residues 19 and 20
862908001193	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
862908001194	phosphopeptide binding site; other site
862908001195	HMMPfam hit to PF00498, Forkhead-associated, score 4e-10
862908001196	1 probable transmembrane helix predicted for BMS0267 by TMHMM2.0 at aa 333-352
862908001197	HMMPfam hit to PF04023, FeoA, score 9.9e-13
862908001198	Fe2+ transport system protein B [Inorganic ion transport and metabolism]; Region: FeoB; COG0370
862908001199	Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Region: Ras_like_GTPase; cl17170
862908001200	G1 box; other site
862908001201	GTP/Mg2+ binding site [chemical binding]; other site
862908001202	G2 box; other site
862908001203	Switch I region; other site
862908001204	G3 box; other site
862908001205	Switch II region; other site
862908001206	G4 box; other site
862908001207	G5 box; other site
862908001208	Nucleoside recognition; Region: Gate; pfam07670
862908001209	Ferrous iron transport protein B C terminus; Region: FeoB_C; pfam07664
862908001210	Nucleoside recognition; Region: Gate; pfam07670
862908001211	HMMPfam hit to PF01926, GTP-binding protein, HSR1-related, score 2.1e-19
862908001212	PS00017 ATP/GTP-binding site motif A (P-loop).
862908001213	HMMPfam hit to PF02421, Ferrous iron transport protein B, score 4.8e-30
862908001214	7 probable transmembrane helices predicted for BMS0269 by TMHMM2.0 at aa 242-264, 303-325, 381-403, 423-445, 483-500, 599-621 and 634-653
862908001215	HMMPfam hit to PF07670, , score 5.9e-14
862908001216	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908001217	HMMPfam hit to PF07664, , score 1.6e-07
862908001218	HMMPfam hit to PF07670, , score 5.7e-14
862908001219	5 probable transmembrane helices predicted for BMS0270 by TMHMM2.0 at aa 13-30, 40-57, 99-121, 127-144 and 151-173
862908001220	1 probable transmembrane helix predicted for BMS0271 by TMHMM2.0 at aa 22-39
862908001221	Biopolymer transport protein ExbD/TolR; Region: ExbD; pfam02472
862908001222	1 probable transmembrane helix predicted for BMS0272 by TMHMM2.0 at aa 20-42
862908001223	Biopolymer transport proteins [Intracellular trafficking and secretion]; Region: TolQ; COG0811
862908001224	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel, score 1.9e-08
862908001225	3 probable transmembrane helices predicted for BMS0273 by TMHMM2.0 at aa 15-37, 126-148 and 168-190
862908001226	Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of...; Region: SIS_GmhA; cd05006
862908001227	dimer interface [polypeptide binding]; other site
862908001228	active site
862908001229	HMMPfam hit to PF01380, Sugar isomerase (SIS), score 4.4e-06
862908001230	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
862908001231	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
862908001232	catalytic residues [active]
862908001233	HMMPfam hit to PF00085, Thioredoxin-related, score 9.6e-41
862908001234	PS00194 Thioredoxin family active site.
862908001235	RDD family; Region: RDD; pfam06271
862908001236	HMMPfam hit to PF06271, RDD, score 9.1e-05
862908001237	2 probable transmembrane helices predicted for BMS0276 by TMHMM2.0 at aa 26-48 and 95-117
862908001238	DNA polymerase I; Provisional; Region: PRK05755
862908001239	PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: PIN_53EXO; cd09859
862908001240	active site
862908001241	metal binding site 1 [ion binding]; metal-binding site
862908001242	putative 5' ssDNA interaction site; other site
862908001243	metal binding site 3; metal-binding site
862908001244	metal binding site 2 [ion binding]; metal-binding site
862908001245	H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: H3TH_53EXO; cd09898
862908001246	putative DNA binding site [nucleotide binding]; other site
862908001247	putative metal binding site [ion binding]; other site
862908001248	DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; Region: DnaQ_like_exo; cl10012
862908001249	active site
862908001250	substrate binding site [chemical binding]; other site
862908001251	catalytic site [active]
862908001252	Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication; Region: DNA_pol_A_pol_I_C; cd08637
862908001253	active site
862908001254	DNA binding site [nucleotide binding]
862908001255	catalytic site [active]
862908001256	HMMPfam hit to PF02739, 5'-3' exonuclease, score 1e-56
862908001257	HMMPfam hit to PF01367, 5'-3' exonuclease, score 7.1e-28
862908001258	HMMPfam hit to PF00476, DNA-directed DNA polymerase, score 5.8e-154
862908001259	PS00447 DNA polymerase family A signature.
862908001260	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
862908001261	N-acetyl-D-glucosamine binding site [chemical binding]; other site
862908001262	catalytic residue [active]
862908001263	Signal peptide predicted for BMS0279 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.895 between residues 19 and 20
862908001264	Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It...; Region: cpn10; cd00320
862908001265	oligomerisation interface [polypeptide binding]; other site
862908001266	mobile loop; other site
862908001267	roof hairpin; other site
862908001268	HMMPfam hit to PF00166, Chaperonin Cpn10, score 1.5e-51
862908001269	PS00681 Chaperonins cpn10 signature.
862908001270	chaperonin GroEL; Reviewed; Region: groEL; PRK12849
862908001271	GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344
862908001272	ring oligomerisation interface [polypeptide binding]; other site
862908001273	ATP/Mg binding site [chemical binding]; other site
862908001274	stacking interactions; other site
862908001275	hinge regions; other site
862908001276	HMMPfam hit to PF00118, Chaperonin Cpn60/TCP-1, score 1.9e-203
862908001277	PS00296 Chaperonins cpn60 signature.
862908001278	Chloride channel protein EriC [Inorganic ion transport and metabolism]; Region: EriC; COG0038
862908001279	CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This...; Region: Voltage_gated_ClC; cd00400
862908001280	Cl- selectivity filter; other site
862908001281	Cl- binding residues [ion binding]; other site
862908001282	pore gating glutamate residue; other site
862908001283	dimer interface [polypeptide binding]; other site
862908001284	FOG: CBS domain [General function prediction only]; Region: COG0517
862908001285	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC; Region: CBS_pair_SpoIVFB_EriC_assoc; cd04612
862908001286	9 probable transmembrane helices predicted for BMS0282 by TMHMM2.0 at aa 27-49, 59-81, 158-180, 190-212, 232-254, 269-291, 298-320, 335-357 and 369-391
862908001287	HMMPfam hit to PF00654, Cl- channel, voltage gated, score 1.8e-56
862908001288	HMMPfam hit to PF00571, CBS, score 3.4e-08
862908001289	HMMPfam hit to PF00571, CBS, score 5.9e-09
862908001290	Protein of unknown function, DUF481; Region: DUF481; pfam04338
862908001291	Signal peptide predicted for BMS0283 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.960 between residues 29 and 30
862908001292	mechanosensitive channel MscS; Provisional; Region: PRK10334
862908001293	Conserved TM helix; Region: TM_helix; pfam05552
862908001294	Mechanosensitive ion channel; Region: MS_channel; pfam00924
862908001295	3 probable transmembrane helices predicted for BMS0284 by TMHMM2.0 at aa 17-39, 60-82 and 97-119
862908001296	HMMPfam hit to PF00924, MscS Mechanosensitive ion channel, score 1.4e-60
862908001297	Domain of unknown function (DUF955); Region: DUF955; cl01076
862908001298	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908001299	Signal peptide predicted for BMS0285 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.973 between residues 18 and 19
862908001300	signal peptidase I, bacterial type; Region: sigpep_I_bact; TIGR02227
862908001301	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
862908001302	Catalytic site [active]
862908001303	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
862908001304	HMMPfam hit to PF00717, Peptidase S24, S26A and S26B, score 5.9e-19
862908001305	PS00760 Signal peptidases I lysine active site.
862908001306	PS00761 Signal peptidases I signature 3.
862908001307	Outer membrane cobalamin receptor protein [Coenzyme metabolism]; Region: BtuB; COG4206
862908001308	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
862908001309	N-terminal plug; other site
862908001310	ligand-binding site [chemical binding]; other site
862908001311	Signal peptide predicted for BMS0289 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.894 between residues 17 and 18
862908001312	HMMPfam hit to PF07715, , score 6e-22
862908001313	HMMPfam hit to PF00593, TonB-dependent receptor, score 1.3e-23
862908001314	Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]; Region: TonB; COG0810
862908001315	Gram-negative bacterial tonB protein; Region: TonB; pfam03544
862908001316	HMMPfam hit to PF03544, Gram-negative bacterial tonB protein, score 0.00015
862908001317	Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+.  Their ligand binding site is formed in the interface between...; Region: TroA-like; cl00262
862908001318	Periplasmic binding protein; Region: Peripla_BP_2; pfam01497
862908001319	intersubunit interface [polypeptide binding]; other site
862908001320	Signal peptide predicted for BMS0291 by SignalP 2.0 HMM (Signal peptide probability 0.931) with cleavage site probability 0.605 between residues 17 and 18
862908001321	HMMPfam hit to PF01497, Periplasmic binding protein, score 2.5e-06
862908001322	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Region: FepC; COG1120
862908001323	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
862908001324	Walker A/P-loop; other site
862908001325	ATP binding site [chemical binding]; other site
862908001326	Q-loop/lid; other site
862908001327	ABC transporter signature motif; other site
862908001328	Walker B; other site
862908001329	D-loop; other site
862908001330	H-loop/switch region; other site
862908001331	HMMPfam hit to PF00005, ABC transporter, score 3e-41
862908001332	PS00017 ATP/GTP-binding site motif A (P-loop).
862908001333	PS00211 ABC transporters family signature.
862908001334	iron-hydroxamate transporter permease subunit; Provisional; Region: PRK10577
862908001335	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
862908001336	ABC-ATPase subunit  interface; other site
862908001337	dimer interface [polypeptide binding]; other site
862908001338	putative PBP binding regions; other site
862908001339	Signal peptide predicted for BMS0293 by SignalP 2.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.496 between residues 21 and 22
862908001340	9 probable transmembrane helices predicted for BMS0293 by TMHMM2.0 at aa 5-23, 43-65, 72-94, 99-121, 133-155, 175-197, 227-249, 264-281 and 293-312
862908001341	HMMPfam hit to PF01032, Bacterial transport system permease protein, score 1.4e-69
862908001342	Four helix bundle sensory module for signal transduction; Region: 4HB_MCP_1; pfam12729
862908001343	ligand binding domain of Tar- and Tsr-related chemoreceptors; Region: Tar_Tsr_LBD; cl00144
862908001344	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
862908001345	dimer interface [polypeptide binding]; other site
862908001346	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
862908001347	putative CheW interface [polypeptide binding]; other site
862908001348	HMMPfam hit to PF00015, Bacterial chemotaxis sensory transducer, score 2.5e-37
862908001349	2 probable transmembrane helices predicted for BMS0295 by TMHMM2.0 at aa 15-37 and 197-219
862908001350	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908001351	S-adenosylmethionine binding site [chemical binding]; other site
862908001352	Signal peptide predicted for BMS0298 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.428 between residues 17 and 18
862908001353	Signal peptide predicted for BMS0299 by SignalP 2.0 HMM (Signal peptide probability 0.953) with cleavage site probability 0.905 between residues 18 and 19
862908001354	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
862908001355	The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like; cl01709
862908001356	Signal peptide predicted for BMS0300 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.985 between residues 22 and 23
862908001357	HMMPfam hit to PF00496, Bacterial extracellular solute-binding protein, family 5, score 1.6e-70
862908001358	PS01040 Bacterial extracellular solute-binding proteins, family 5 signature.
862908001359	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4174
862908001360	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
862908001361	dimer interface [polypeptide binding]; other site
862908001362	conserved gate region; other site
862908001363	putative PBP binding loops; other site
862908001364	ABC-ATPase subunit interface; other site
862908001365	Signal peptide predicted for BMS0301 by SignalP 2.0 HMM (Signal peptide probability 0.963) with cleavage site probability 0.848 between residues 25 and 26
862908001366	6 probable transmembrane helices predicted for BMS0301 by TMHMM2.0 at aa 5-27, 120-142, 162-184, 210-232, 267-289 and 317-339
862908001367	HMMPfam hit to PF00528, Binding-protein-dependent transport systems inner membrane component, score 6.7e-46
862908001368	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
862908001369	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4239
862908001370	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
862908001371	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
862908001372	dimer interface [polypeptide binding]; other site
862908001373	conserved gate region; other site
862908001374	putative PBP binding loops; other site
862908001375	ABC-ATPase subunit interface; other site
862908001376	Signal peptide predicted for BMS0302 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.496 between residues 45 and 46
862908001377	6 probable transmembrane helices predicted for BMS0302 by TMHMM2.0 at aa 23-45, 145-167, 180-197, 201-220, 252-274 and 304-326
862908001378	HMMPfam hit to PF00528, Binding-protein-dependent transport systems inner membrane component, score 4.2e-48
862908001379	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
862908001380	Signal peptide predicted for BMS0303 by SignalP 2.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.560 between residues 19 and 20
862908001381	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
862908001382	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
862908001383	protein binding site [polypeptide binding]; other site
862908001384	HMMPfam hit to PF00595, PDZ/DHR/GLGF, score 0.059
862908001385	HMMPfam hit to PF00089, Peptidase S1, chymotrypsin, score 2.7e-18
862908001386	Signal peptide predicted for BMS0304 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.848 between residues 21 and 22
862908001387	Phosphatidylserine decarboxylase; Region: PS_Dcarbxylase; cl03656
862908001388	HMMPfam hit to PF02666, Phosphatidylserine decarboxylase-related, score 2.6e-50
862908001389	Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1; Region: EEP-1; cd09083
862908001390	putative catalytic site [active]
862908001391	putative metal binding site [ion binding]; other site
862908001392	putative phosphate binding site [ion binding]; other site
862908001393	HMMPfam hit to PF03372, Endonuclease/exonuclease/phosphatase, score 1.8e-18
862908001394	B12-dependent methionine synthase; Provisional; Region: metH; PRK09490
862908001395	Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]; Region: MetH; COG0646
862908001396	MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH).  Cobalamin-dependent...; Region: MeTr; cd00740
862908001397	substrate binding pocket [chemical binding]; other site
862908001398	B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy); Region: methionine_synthase_B12_BD; cd02069
862908001399	B12 binding site [chemical binding]; other site
862908001400	cobalt ligand [ion binding]; other site
862908001401	Vitamin B12 dependent methionine synthase, activation domain; Region: Met_synt_B12; pfam02965
862908001402	HMMPfam hit to PF02965, Vitamin B12 dependent methionine synthase, activation region, score 7.3e-125
862908001403	HMMPfam hit to PF02310, Coenzyme B12-binding, score 1.3e-25
862908001404	HMMPfam hit to PF02607, Cobalamin-dependent methionine synthase, B12-binding, score 3.4e-42
862908001405	HMMPfam hit to PF00809, Dihydropteroate synthase, DHPS, score 2.6e-57
862908001406	HMMPfam hit to PF02574, Homocysteine S-methyltransferase, score 6.8e-127
862908001407	Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase...; Region: MTHFR; cd00537
862908001408	FAD binding site [chemical binding]; other site
862908001409	HMMPfam hit to PF02219, Methylenetetrahydrofolate reductase, score 3.3e-44
862908001410	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908001411	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908001412	ATP binding site [chemical binding]; other site
862908001413	Mg2+ binding site [ion binding]; other site
862908001414	G-X-G motif; other site
862908001415	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 3.2e-20
862908001416	5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]; Region: UshA; COG0737
862908001417	Escherichia coli UshA-like family, N-terminal metallophosphatase domain; Region: MPP_UshA_N_like; cd00845
862908001418	active site
862908001419	metal binding site [ion binding]; metal-binding site
862908001420	5'-nucleotidase, C-terminal domain; Region: 5_nucleotid_C; pfam02872
862908001421	Signal peptide predicted for BMS0314 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.504 between residues 20 and 21
862908001422	HMMPfam hit to PF00149, Metallophosphoesterase, score 9e-18
862908001423	PS00785 5'-nucleotidase signature 1.
862908001424	PS00237 G-protein coupled receptors signature.
862908001425	Na+/H+ antiporter NhaC; Region: antiport_nhaC; TIGR00931
862908001426	HMMPfam hit to PF03553, Na+/H+ antiporter NhaC, score 6.3e-64
862908001427	10 probable transmembrane helices predicted for BMS0315 by TMHMM2.0 at aa 7-29, 39-61, 81-103, 113-135, 142-164, 197-219, 240-257, 262-281, 323-345 and 446-468
862908001428	Aldose 1-epimerase, similar to Lactococcus lactis lacX; Region: Aldose_epim_lacX; cd09024
862908001429	active site
862908001430	catalytic residues [active]
862908001431	HMMPfam hit to PF01263, Aldose 1-epimerase, score 8.3e-19
862908001432	1 probable transmembrane helix predicted for BMS0317 by TMHMM2.0 at aa 165-184
862908001433	Alg9-like mannosyltransferase family; Region: Glyco_transf_22; cl17751
862908001434	HMMPfam hit to PF03901, Alg9-like mannosyltransferase, score 1.4e-06
862908001435	9 probable transmembrane helices predicted for BMS0318 by TMHMM2.0 at aa 7-26, 82-104, 116-133, 170-192, 205-227, 255-277, 284-301, 306-325 and 332-354
862908001436	PS00190 Cytochrome c family heme-binding site signature.
862908001437	Signal peptide predicted for BMS0319 by SignalP 2.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.981 between residues 16 and 17
862908001438	Signal peptide predicted for BMS0320 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.973 between residues 21 and 22
862908001439	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
862908001440	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
862908001441	non-specific DNA binding site [nucleotide binding]; other site
862908001442	salt bridge; other site
862908001443	sequence-specific DNA binding site [nucleotide binding]; other site
862908001444	HMMPfam hit to PF01381, Helix-turn-helix motif, score 3.6e-06
862908001445	Signal peptide predicted for BMS0322 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.992 between residues 20 and 21
862908001446	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
862908001447	sequence-specific DNA binding site [nucleotide binding]; other site
862908001448	salt bridge; other site
862908001449	putative capsule biosynthesis cluster
862908001450	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
862908001451	This family is most closely related to the GT1 family of glycosyltransferases.  wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea; Region: GT1_wbaZ_like; cd03804
862908001452	putative ADP-binding pocket [chemical binding]; other site
862908001453	HMMPfam hit to PF00534, Glycosyl transferase, group 1, score 3e-29
862908001454	UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]; Region: GalE; COG1087
862908001455	UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs; Region: UDP_G4E_1_SDR_e; cd05247
862908001456	NAD binding site [chemical binding]; other site
862908001457	homodimer interface [polypeptide binding]; other site
862908001458	active site
862908001459	substrate binding site [chemical binding]; other site
862908001460	HMMPfam hit to PF01370, NAD-dependent epimerase/dehydratase, score 1.6e-109
862908001461	O-Antigen ligase; Region: Wzy_C; pfam04932
862908001462	Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]; Region: RfaL; COG3307
862908001463	Signal peptide predicted for BMS0329 by SignalP 2.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.527 between residues 27 and 28
862908001464	9 probable transmembrane helices predicted for BMS0329 by TMHMM2.0 at aa 13-35, 55-77, 90-107, 117-139, 160-182, 192-214, 231-253, 318-340 and 349-371
862908001465	HMMPfam hit to PF04932, O-antigen polymerase, score 2.8e-15
862908001466	dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]; Region: RfbB; COG1088
862908001467	dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs; Region: dTDP_GD_SDR_e; cd05246
862908001468	NAD binding site [chemical binding]; other site
862908001469	substrate binding site [chemical binding]; other site
862908001470	homodimer interface [polypeptide binding]; other site
862908001471	active site
862908001472	HMMPfam hit to PF01370, NAD-dependent epimerase/dehydratase, score 6e-124
862908001473	PS00017 ATP/GTP-binding site motif A (P-loop).
862908001474	Signal peptide predicted for BMS0330 by SignalP 2.0 HMM (Signal peptide probability 0.920) with cleavage site probability 0.594 between residues 23 and 24
862908001475	G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase; Region: G1P_TT_short; cd02538
862908001476	glucose-1-phosphate thymidylyltransferase, short form; Region: rmlA; TIGR01207
862908001477	substrate binding site; other site
862908001478	tetramer interface; other site
862908001479	HMMPfam hit to PF00483, Nucleotidyl transferase, score 7.2e-98
862908001480	9 probable transmembrane helices predicted for BMS0332 by TMHMM2.0 at aa 7-29, 117-139, 159-181, 186-208, 229-246, 278-300, 305-327, 342-364 and 377-399
862908001481	Methyltransferase domain; Region: Methyltransf_23; pfam13489
862908001482	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908001483	S-adenosylmethionine binding site [chemical binding]; other site
862908001484	Methyltransferase domain; Region: Methyltransf_31; pfam13847
862908001485	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908001486	S-adenosylmethionine binding site [chemical binding]; other site
862908001487	PS00307 Legume lectins beta-chain signature.
862908001488	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional; Region: PRK10714
862908001489	Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187
862908001490	Ligand binding site; other site
862908001491	Putative Catalytic site; other site
862908001492	DXD motif; other site
862908001493	2 probable transmembrane helices predicted for BMS0335 by TMHMM2.0 at aa 234-256 and 266-288
862908001494	HMMPfam hit to PF00535, Glycosyl transferase, family 2, score 2e-32
862908001495	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
862908001496	Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]; Region: COG3958
862908001497	PYR/PP interface [polypeptide binding]; other site
862908001498	dimer interface [polypeptide binding]; other site
862908001499	TPP binding site [chemical binding]; other site
862908001500	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
862908001501	HMMPfam hit to PF02780, Transketolase, C terminal, score 0.0013
862908001502	HMMPfam hit to PF02779, Transketolase, central region, score 6.1e-18
862908001503	PS00017 ATP/GTP-binding site motif A (P-loop).
862908001504	Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the...; Region: TPP_TK; cd02012
862908001505	TPP-binding site [chemical binding]; other site
862908001506	dimer interface [polypeptide binding]; other site
862908001507	HMMPfam hit to PF00456, Transketolase, N terminal, score 4.3e-14
862908001508	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
862908001509	This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides; Region: GT1_cap1E_like; cd03808
862908001510	putative ADP-binding pocket [chemical binding]; other site
862908001511	HMMPfam hit to PF00534, Glycosyl transferase, group 1, score 2.7e-28
862908001512	Signal peptide predicted for BMS0342 by SignalP 2.0 HMM (Signal peptide probability 0.896) with cleavage site probability 0.462 between residues 42 and 43
862908001513	9 probable transmembrane helices predicted for BMS0342 by TMHMM2.0 at aa 21-43, 71-93, 106-123, 128-150, 229-251, 266-285, 306-328, 334-356 and 369-391
862908001514	Vi polysaccharide biosynthesis protein TviB; Provisional; Region: PRK15182
862908001515	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Region: NAD_Gly3P_dh_N; pfam01210
862908001516	UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984
862908001517	UDP binding domain; Region: UDPG_MGDP_dh_C; smart00984
862908001518	Signal peptide predicted for BMS0344 by SignalP 2.0 HMM (Signal peptide probability 0.707) with cleavage site probability 0.438 between residues 25 and 26
862908001519	HMMPfam hit to PF03721, UDP-glucose/GDP-mannose dehydrogenase, score 6.1e-61
862908001520	1 probable transmembrane helix predicted for BMS0344 by TMHMM2.0 at aa 5-27
862908001521	HMMPfam hit to PF00984, UDP-glucose/GDP-mannose dehydrogenase, score 4.5e-43
862908001522	HMMPfam hit to PF03720, UDP-glucose/GDP-mannose dehydrogenase, score 3.5e-19
862908001523	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
862908001524	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908001525	NAD(P) binding site [chemical binding]; other site
862908001526	active site
862908001527	HMMPfam hit to PF01370, NAD-dependent epimerase/dehydratase, score 2.8e-77
862908001528	Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]; Region: AsnB; COG0367
862908001529	Glutamine amidotransferases class-II (GATase) asparagine synthase_B type.  Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a  glutaminase domain and a...; Region: AsnB; cd00712
862908001530	active site
862908001531	dimer interface [polypeptide binding]; other site
862908001532	The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B  catalyzes the...; Region: Asn_Synthase_B_C; cd01991
862908001533	Ligand Binding Site [chemical binding]; other site
862908001534	Molecular Tunnel; other site
862908001535	PS00443 Glutamine amidotransferases class-II active site.
862908001536	HMMPfam hit to PF00310, Glutamine amidotransferase, class-II, score 3.7e-09
862908001537	HMMPfam hit to PF00733, Asparagine synthase, score 1.2e-68
862908001538	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
862908001539	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
862908001540	2 probable transmembrane helices predicted for BMS0347 by TMHMM2.0 at aa 51-73 and 80-102
862908001541	HMMPfam hit to PF00534, Glycosyl transferase, group 1, score 6.5e-18
862908001542	CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; pfam01066
862908001543	6 probable transmembrane helices predicted for BMS0349 by TMHMM2.0 at aa 26-45, 50-72, 113-135, 140-157, 186-208 and 218-240
862908001544	Cytidylyltransferase; Region: CTP_transf_2; pfam01467
862908001545	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
862908001546	active site
862908001547	nucleotide binding site [chemical binding]; other site
862908001548	HIGH motif; other site
862908001549	KMSKS motif; other site
862908001550	HMMPfam hit to PF01467, Cytidylyltransferase, score 8.3e-15
862908001551	Signal peptide predicted for BMS0351 by SignalP 2.0 HMM (Signal peptide probability 0.972) with cleavage site probability 0.643 between residues 33 and 34
862908001552	2 probable transmembrane helices predicted for BMS0351 by TMHMM2.0 at aa 9-31 and 391-408
862908001553	12 probable transmembrane helices predicted for BMS0352 by TMHMM2.0 at aa 13-28, 33-50, 55-74, 89-111, 132-151, 183-200, 209-228, 233-250, 257-279, 379-401, 413-432 and 442-464
862908001554	Multidrug and toxic compound extrusion family and similar proteins; Region: MATE_like; cl09326
862908001555	10 probable transmembrane helices predicted for BMS0353 by TMHMM2.0 at aa 13-35, 42-64, 85-107, 141-160, 165-187, 245-267, 288-310, 330-352, 359-378 and 383-405
862908001556	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908001557	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]; Region: Rfe; COG0472
862908001558	This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond...; Region: GT_WecA_like; cd06853
862908001559	Mg++ binding site [ion binding]; other site
862908001560	putative catalytic motif [active]
862908001561	substrate binding site [chemical binding]; other site
862908001562	11 probable transmembrane helices predicted for BMS0355 by TMHMM2.0 at aa 4-26, 47-69, 74-91, 104-121, 134-156, 163-182, 187-204, 216-238, 248-270, 301-318 and 323-342
862908001563	HMMPfam hit to PF00953, Glycosyl transferase, family 4, score 2e-27
862908001564	PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature.
862908001565	UDP-N-acetylglucosamine 4,6-dehydratase; Region: PseB; TIGR03589
862908001566	UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs; Region: UDP_invert_4-6DH_SDR_e; cd05237
862908001567	NAD(P) binding site [chemical binding]; other site
862908001568	homodimer interface [polypeptide binding]; other site
862908001569	substrate binding site [chemical binding]; other site
862908001570	active site
862908001571	HMMPfam hit to PF02719, Polysaccharide biosynthesis protein CapD, score 3.4e-08
862908001572	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399
862908001573	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
862908001574	inhibitor-cofactor binding pocket; inhibition site
862908001575	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908001576	catalytic residue [active]
862908001577	HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS aminotransferase, score 4.3e-120
862908001578	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
862908001579	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
862908001580	HMMPfam hit to PF00583, GCN5-related N-acetyltransferase, score 0.0012
862908001581	pseudaminic acid synthase; Region: PseI; TIGR03586
862908001582	NeuB family; Region: NeuB; pfam03102
862908001583	C-terminal SAF domain of sialic acid synthetase; Region: SAF_NeuB_like; cd11615
862908001584	NeuB binding interface [polypeptide binding]; other site
862908001585	putative substrate binding site [chemical binding]; other site
862908001586	HMMPfam hit to PF03102, NeuB, score 4e-111
862908001587	HMMPfam hit to PF01354, Antifreeze-like, score 4.1e-12
862908001588	imidazole glycerol phosphate synthase subunit HisH; Provisional; Region: hisH; PRK13141
862908001589	Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS); Region: GATase1_IGP_Synthase; cd01748
862908001590	putative active site [active]
862908001591	oxyanion strand; other site
862908001592	catalytic triad [active]
862908001593	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 7.5e-24
862908001594	HMMPfam hit to PF07685, , score 0.00068
862908001595	PS00442 Glutamine amidotransferases class-I active site.
862908001596	The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)...; Region: HisF; cd04731
862908001597	Histidine biosynthesis protein; Region: His_biosynth; pfam00977
862908001598	substrate binding site [chemical binding]; other site
862908001599	glutamase interaction surface [polypeptide binding]; other site
862908001600	HMMPfam hit to PF00977, Histidine biosynthesis protein, score 1.3e-59
862908001601	This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily; Region: Alpha_ANH_like_III; cd01996
862908001602	Ligand Binding Site [chemical binding]; other site
862908001603	CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety; Region: CMP-NeuAc_Synthase; cd02513
862908001604	ligand binding site; other site
862908001605	tetramer interface; other site
862908001606	HMMPfam hit to PF02348, Acylneuraminate cytidylyltransferase, score 3.3e-16
862908001607	pseudaminic acid biosynthesis-associated protein PseG; Region: PseG; TIGR03590
862908001608	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
862908001609	putative transferase, LIC12162 family; Region: o_ant_LIC12162; TIGR04331
862908001610	Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]; Region: RfbX; COG2244
862908001611	Multidrug and toxic compound extrusion family and similar proteins; Region: MATE_like; cl09326
862908001612	12 probable transmembrane helices predicted for BMS0367 by TMHMM2.0 at aa 12-31, 41-63, 84-106, 185-207, 228-250, 265-287, 314-336, 351-373, 380-399, 404-426, 439-461 and 471-493
862908001613	Methyltransferase domain; Region: Methyltransf_23; pfam13489
862908001614	Methyltransferase domain; Region: Methyltransf_11; pfam08241
862908001615	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
862908001616	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908001617	NAD(P) binding site [chemical binding]; other site
862908001618	active site
862908001619	HMMPfam hit to PF01370, NAD-dependent epimerase/dehydratase, score 2.5e-25
862908001620	This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801
862908001621	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
862908001622	1 probable transmembrane helix predicted for BMS0370 by TMHMM2.0 at aa 90-112
862908001623	HMMPfam hit to PF00534, Glycosyl transferase, group 1, score 1.7e-41
862908001624	dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]; Region: RfbC; COG1898
862908001625	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
862908001626	extended (e) SDRs; Region: SDR_e; cd08946
862908001627	NAD(P) binding site [chemical binding]; other site
862908001628	active site
862908001629	substrate binding site [chemical binding]; other site
862908001630	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
862908001631	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761
862908001632	active site
862908001633	HMMPfam hit to PF00535, Glycosyl transferase, family 2, score 1.1e-38
862908001634	Multidrug and toxic compound extrusion family and similar proteins; Region: MATE_like; cl09326
862908001635	9 probable transmembrane helices predicted for BMS0374 by TMHMM2.0 at aa 20-42, 57-76, 89-111, 115-137, 158-177, 181-200, 297-319, 334-356 and 369-391
862908001636	Signal peptide predicted for BMS0374 by SignalP 2.0 HMM (Signal peptide probability 0.898) with cleavage site probability 0.384 between residues 42 and 43
862908001637	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
862908001638	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
862908001639	HMMPfam hit to PF00534, Glycosyl transferase, group 1, score 4.9e-17
862908001640	Undecaprenyl-phosphate glucose phosphotransferase; Region: WcaJ_sugtrans; TIGR03023
862908001641	Peptidase C25 family N-terminal domain, found in Arg-gingipain (Rgp), Lys-gingipain (Kgp) and related proteins; Region: Peptidase_C25_N; cl03181
862908001642	Bacterial sugar transferase; Region: Bac_transf; pfam02397
862908001643	HMMPfam hit to PF02397, Bacterial sugar transferase, score 7.7e-41
862908001644	5 probable transmembrane helices predicted for BMS0376 by TMHMM2.0 at aa 11-33, 43-62, 83-101, 111-133 and 272-294
862908001645	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
862908001646	active site
862908001647	HMMPfam hit to PF00535, Glycosyl transferase, family 2, score 2.5e-17
862908001648	lipopolysaccharide biosynthesis protein RfbH; Provisional; Region: PRK15407
862908001649	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
862908001650	inhibitor-cofactor binding pocket; inhibition site
862908001651	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908001652	catalytic residue [active]
862908001653	HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS aminotransferase, score 1.7e-130
862908001654	CDP-tyvelose 2-epimerase, extended (e) SDRs; Region: CDP_TE_SDR_e; cd05258
862908001655	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
862908001656	NAD binding site [chemical binding]; other site
862908001657	homotetramer interface [polypeptide binding]; other site
862908001658	homodimer interface [polypeptide binding]; other site
862908001659	active site
862908001660	substrate binding site [chemical binding]; other site
862908001661	Signal peptide predicted for BMS0380 by SignalP 2.0 HMM (Signal peptide probability 0.801) with cleavage site probability 0.469 between residues 18 and 19
862908001662	HMMPfam hit to PF01370, NAD-dependent epimerase/dehydratase, score 2.8e-40
862908001663	Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure...; Region: GCD1; COG1208
862908001664	G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose; Region: G1P_cytidylyltransferase; cd02524
862908001665	substrate binding site; other site
862908001666	HMMPfam hit to PF00483, Nucleotidyl transferase, score 3e-09
862908001667	CDP-glucose 4,6-dehydratase; Region: CDP_4_6_dhtase; TIGR02622
862908001668	CDP-D-glucose 4,6-dehydratase, extended (e) SDRs; Region: CDP_GD_SDR_e; cd05252
862908001669	NAD binding site [chemical binding]; other site
862908001670	homotetramer interface [polypeptide binding]; other site
862908001671	homodimer interface [polypeptide binding]; other site
862908001672	substrate binding site [chemical binding]; other site
862908001673	active site
862908001674	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
862908001675	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908001676	NAD(P) binding site [chemical binding]; other site
862908001677	active site
862908001678	Predicted membrane protein [Function unknown]; Region: COG3463
862908001679	9 probable transmembrane helices predicted for BMS0384 by TMHMM2.0 at aa 9-31, 91-113, 120-142, 164-186, 199-221, 249-271, 278-297, 302-320 and 333-350
862908001680	Dolichyl-phosphate-mannose-protein mannosyltransferase; Region: PMT_2; pfam13231
862908001681	Alg9-like mannosyltransferase family; Region: Glyco_transf_22; cl17751
862908001682	HMMPfam hit to PF02366, Glycosyl transferase, family 39, score 4.2e-05
862908001683	9 probable transmembrane helices predicted for BMS0385 by TMHMM2.0 at aa 12-31, 85-107, 140-157, 170-192, 209-231, 261-283, 295-313, 318-340 and 347-369
862908001684	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908001685	Predicted integral membrane protein [Function unknown]; Region: COG5650
862908001686	13 probable transmembrane helices predicted for BMS0386 by TMHMM2.0 at aa 7-25, 35-52, 57-74, 89-111, 118-140, 181-203, 208-225, 254-273, 280-302, 312-334, 373-392, 397-416 and 423-440
862908001687	Alg9-like mannosyltransferase family; Region: Glyco_transf_22; cl17751
862908001688	HMMPfam hit to PF03901, Alg9-like mannosyltransferase, score 3e-06
862908001689	9 probable transmembrane helices predicted for BMS0387 by TMHMM2.0 at aa 13-35, 87-109, 130-149, 208-225, 232-254, 293-310, 315-332, 336-358 and 370-392
862908001690	Alg9-like mannosyltransferase family; Region: Glyco_transf_22; cl17751
862908001691	6 probable transmembrane helices predicted for BMS0388 by TMHMM2.0 at aa 35-52, 59-81, 120-137, 144-159, 164-181 and 194-212
862908001692	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
862908001693	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
862908001694	HMMPfam hit to PF00534, Glycosyl transferase, group 1, score 2.4e-15
862908001695	dolichyl-phosphate beta-D-mannosyltransferase; Region: PLN02726
862908001696	DPG_synthase is involved in protein N-linked glycosylation; Region: DPG_synthase; cd04188
862908001697	Ligand binding site; other site
862908001698	Ligand binding site; other site
862908001699	Ligand binding site; other site
862908001700	Putative Catalytic site; other site
862908001701	DXD motif; other site
862908001702	HMMPfam hit to PF00535, Glycosyl transferase, family 2, score 5.5e-13
862908001703	Methyltransferase domain; Region: Methyltransf_23; pfam13489
862908001704	Methyltransferase domain; Region: Methyltransf_12; pfam08242
862908001705	Alg9-like mannosyltransferase family; Region: Glyco_transf_22; cl17751
862908001706	HMMPfam hit to PF03901, Alg9-like mannosyltransferase, score 3.3e-07
862908001707	9 probable transmembrane helices predicted for BMS0392 by TMHMM2.0 at aa 9-31, 88-110, 122-141, 146-163, 168-190, 210-232, 267-289, 317-336 and 349-371
862908001708	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
862908001709	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
862908001710	UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide; Region: Beta4Glucosyltransferase; cd02511
862908001711	putative metal binding site; other site
862908001712	HMMPfam hit to PF00535, Glycosyl transferase, family 2, score 5.4e-20
862908001713	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
862908001714	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
862908001715	putative active site [active]
862908001716	Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; Region: PGDH_like_2; cd12172
862908001717	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Region: 2-Hacid_dh; pfam00389
862908001718	putative ligand binding site [chemical binding]; other site
862908001719	putative NAD binding site [chemical binding]; other site
862908001720	catalytic site [active]
862908001721	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding, score 5.8e-43
862908001722	PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2.
862908001723	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region, score 7.6e-09
862908001724	Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of...; Region: SIS_GmhA; cd05006
862908001725	active site
862908001726	HpcH/HpaI aldolase/citrate lyase family; Region: HpcH_HpaI; cl17231
862908001727	HMMPfam hit to PF03328, HpcH/HpaI aldolase, score 3.4e-32
862908001728	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
862908001729	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
862908001730	Oxidoreductase family, C-terminal alpha/beta domain; Region: GFO_IDH_MocA_C; pfam02894
862908001731	HMMPfam hit to PF01408, Oxidoreductase, N-terminal, score 3.6e-17
862908001732	HMMPfam hit to PF02894, Oxidoreductase, C-terminal, score 0.033
862908001733	SNF2 family N-terminal domain; Region: SNF2_N; pfam00176
862908001734	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
862908001735	ATP binding site [chemical binding]; other site
862908001736	putative Mg++ binding site [ion binding]; other site
862908001737	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
862908001738	nucleotide binding region [chemical binding]; other site
862908001739	ATP-binding site [chemical binding]; other site
862908001740	HMMPfam hit to PF00271, Helicase, C-terminal, score 1.4e-26
862908001741	HMMPfam hit to PF00176, SNF2-related, score 1.8e-53
862908001742	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 1.3e-06
862908001743	Signal peptide predicted for BMS0402 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.871 between residues 31 and 32
862908001744	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
862908001745	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908001746	active site
862908001747	phosphorylation site [posttranslational modification]
862908001748	intermolecular recognition site; other site
862908001749	dimerization interface [polypeptide binding]; other site
862908001750	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
862908001751	DNA binding site [nucleotide binding]
862908001752	HMMPfam hit to PF00072, Response regulator receiver, score 1.1e-06
862908001753	HMMPfam hit to PF00486, Transcriptional regulatory protein, C-terminal, score 6.7e-13
862908001754	RNA polymerase sigma factor RpoD; Validated; Region: PRK05658
862908001755	Sigma-70 factor, region 1.2; Region: Sigma70_r1_2; pfam00140
862908001756	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
862908001757	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
862908001758	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
862908001759	DNA binding residues [nucleotide binding]
862908001760	HMMPfam hit to PF04545, Sigma-70 region 4, score 3.1e-19
862908001761	PS00716 Sigma-70 factors family signature 2.
862908001762	HMMPfam hit to PF04539, Sigma-70 region 3, score 1.3e-43
862908001763	HMMPfam hit to PF04542, Sigma-70 region 2, score 1.8e-29
862908001764	PS00715 Sigma-70 factors family signature 1.
862908001765	HMMPfam hit to PF00140, Sigma-70 region 1.2, score 1.3e-13
862908001766	DNA primase; Validated; Region: dnaG; PRK05667
862908001767	CHC2 zinc finger; Region: zf-CHC2; cl17510
862908001768	DNA primase catalytic core, N-terminal domain; Region: Toprim_N; pfam08275
862908001769	TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG...; Region: TOPRIM_DnaG_primases; cd03364
862908001770	active site
862908001771	metal binding site [ion binding]; metal-binding site
862908001772	interdomain interaction site; other site
862908001773	HMMPfam hit to PF01751, TOPRIM, score 3.1e-08
862908001774	HMMPfam hit to PF01807, Zn-finger, CHC2 type, score 4.9e-22
862908001775	Methyltransferase domain; Region: Methyltransf_31; pfam13847
862908001776	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908001777	S-adenosylmethionine binding site [chemical binding]; other site
862908001778	HMMPfam hit to PF02390, Putative methyltransferase, score 6.7e-44
862908001779	Signal peptide predicted for BMS0407 by SignalP 2.0 HMM (Signal peptide probability 0.936) with cleavage site probability 0.936 between residues 42 and 43
862908001780	1 probable transmembrane helix predicted for BMS0408 by TMHMM2.0 at aa 13-30
862908001781	Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739
862908001782	Peptidase family M23; Region: Peptidase_M23; pfam01551
862908001783	HMMPfam hit to PF01551, Peptidase M23B, score 2.8e-11
862908001784	Signal peptide predicted for BMS0409 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.813 between residues 22 and 23
862908001785	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
862908001786	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
862908001787	substrate binding pocket [chemical binding]; other site
862908001788	membrane-bound complex binding site; other site
862908001789	hinge residues; other site
862908001790	Signal peptide predicted for BMS0410 by SignalP 2.0 HMM (Signal peptide probability 0.783) with cleavage site probability 0.715 between residues 18 and 19
862908001791	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
862908001792	DegT/DnrJ/EryC1/StrS aminotransferase family; Region: DegT_DnrJ_EryC1; pfam01041
862908001793	inhibitor-cofactor binding pocket; inhibition site
862908001794	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908001795	catalytic residue [active]
862908001796	HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS aminotransferase, score 1.2e-87
862908001797	Signal peptide predicted for BMS0414 by SignalP 2.0 HMM (Signal peptide probability 0.943) with cleavage site probability 0.610 between residues 18 and 19
862908001798	Signal peptide predicted for BMS0415 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.998 between residues 19 and 20
862908001799	Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+...; Region: Nudix_Hydrolase; cd02883
862908001800	nudix motif; other site
862908001801	HMMPfam hit to PF00293, NUDIX hydrolase, score 2.8e-18
862908001802	PS00893 mutT domain signature.
862908001803	Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the...; Region: S2P-M50_like_1; cd06158
862908001804	Peptidase family M50; Region: Peptidase_M50; pfam02163
862908001805	active site
862908001806	putative substrate binding region [chemical binding]; other site
862908001807	5 probable transmembrane helices predicted for BMS0417 by TMHMM2.0 at aa 7-29, 55-77, 98-120, 140-162 and 183-205
862908001808	HMMPfam hit to PF02163, Peptidase M50, score 1.3e-41
862908001809	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908001810	ScpA/B protein; Region: ScpA_ScpB; cl00598
862908001811	HMMPfam hit to PF02616, Protein of unknown function DUF173, score 4.3e-07
862908001812	Putative transcriptional regulators (Ypuh-like); Region: DUF387; pfam04079
862908001813	HMMPfam hit to PF04079, Conserved hypothetical protein 281, score 4.7e-55
862908001814	16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187
862908001815	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
862908001816	RNA binding surface [nucleotide binding]; other site
862908001817	Pseudouridine synthases, RsuA subfamily; Region: PseudoU_synth_RsuA_like; cd02870
862908001818	active site
862908001819	HMMPfam hit to PF01479, RNA-binding S4, score 2.3e-09
862908001820	HMMPfam hit to PF00849, Pseudouridine synthase, score 1.5e-18
862908001821	PS01149 Rsu family of pseudouridine synthase signature.
862908001822	Protease II [Amino acid transport and metabolism]; Region: PtrB; COG1770
862908001823	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
862908001824	HMMPfam hit to PF02897, Peptidase S9A, prolyl oligopeptidase, N-terminal beta-propeller, score 1.8e-70
862908001825	PS00017 ATP/GTP-binding site motif A (P-loop).
862908001826	HMMPfam hit to PF00326, Peptidase S9, prolyl oligopeptidase active site region, score 6.3e-79
862908001827	helicase 45; Provisional; Region: PTZ00424
862908001828	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
862908001829	ATP binding site [chemical binding]; other site
862908001830	Mg++ binding site [ion binding]; other site
862908001831	motif III; other site
862908001832	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
862908001833	nucleotide binding region [chemical binding]; other site
862908001834	ATP-binding site [chemical binding]; other site
862908001835	RNA recognition motif in the DbpA subfamily of prokaryotic DEAD-box rRNA helicases; Region: RRM_DbpA; cd12252
862908001836	RNA binding site [nucleotide binding]; other site
862908001837	HMMPfam hit to PF00270, DEAD/DEAH box helicase, N-terminal, score 1e-65
862908001838	PS00017 ATP/GTP-binding site motif A (P-loop).
862908001839	PS00039 DEAD-box subfamily ATP-dependent helicases signature.
862908001840	HMMPfam hit to PF00271, Helicase, C-terminal, score 2.2e-36
862908001841	HI0933-like protein; Region: HI0933_like; pfam03486
862908001842	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
862908001843	Signal peptide predicted for BMS0425 by SignalP 2.0 HMM (Signal peptide probability 0.777) with cleavage site probability 0.638 between residues 25 and 26
862908001844	HMMPfam hit to PF03486, HI0933-like protein, score 7.4e-126
862908001845	Signal peptide predicted for BMS0426 by SignalP 2.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.985 between residues 18 and 19
862908001846	undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional; Region: murG; PRK00726
862908001847	MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide...; Region: GT1_MurG; cd03785
862908001848	active site
862908001849	homodimer interface [polypeptide binding]; other site
862908001850	HMMPfam hit to PF03033, Glycosyl transferase, family 28, score 6.4e-30
862908001851	HMMPfam hit to PF04101, Glycosyltransferase 28, C-terminal, score 6e-28
862908001852	Signal peptide predicted for BMS0428 by SignalP 2.0 HMM (Signal peptide probability 0.965) with cleavage site probability 0.551 between residues 20 and 21
862908001853	Domain of unknown function (DUF4105); Region: DUF4105; pfam13387
862908001854	Signal peptide predicted for BMS0429 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.960 between residues 18 and 19
862908001855	Protein of unknown function (DUF3015); Region: DUF3015; pfam11220
862908001856	Signal peptide predicted for BMS0430 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.968 between residues 20 and 21
862908001857	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
862908001858	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908001859	active site
862908001860	phosphorylation site [posttranslational modification]
862908001861	intermolecular recognition site; other site
862908001862	dimerization interface [polypeptide binding]; other site
862908001863	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
862908001864	DNA binding site [nucleotide binding]
862908001865	HMMPfam hit to PF00486, Transcriptional regulatory protein, C-terminal, score 4.1e-14
862908001866	HMMPfam hit to PF00072, Response regulator receiver, score 1.6e-29
862908001867	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in mouse RS21-C6 protein and its homologs; Region: NTP-PPase_RS21-C6_like; cd11537
862908001868	homodimer interface [polypeptide binding]; other site
862908001869	chemical substrate binding site [chemical binding]; other site
862908001870	oligomer interface [polypeptide binding]; other site
862908001871	metal binding site [ion binding]; metal-binding site
862908001872	Chalcone-flavanone isomerase; Region: Chalcone; cl03589
862908001873	Signal peptide predicted for BMS0433 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.840 between residues 18 and 19
862908001874	Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]; Region: TypA; COG1217
862908001875	Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases; Region: TypA_BipA; cd01891
862908001876	G1 box; other site
862908001877	putative GEF interaction site [polypeptide binding]; other site
862908001878	GTP/Mg2+ binding site [chemical binding]; other site
862908001879	Switch I region; other site
862908001880	G2 box; other site
862908001881	G3 box; other site
862908001882	Switch II region; other site
862908001883	G4 box; other site
862908001884	G5 box; other site
862908001885	BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu.  BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a...; Region: BipA_TypA_II; cd03691
862908001886	BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants.  BipA is a highly...; Region: BipA_TypA_C; cd03710
862908001887	PS00107 Protein kinases ATP-binding region signature.
862908001888	HMMPfam hit to PF00679, Elongation factor G, C-terminal, score 2.6e-24
862908001889	HMMPfam hit to PF03144, Elongation factor Tu, domain 2, score 1.2e-06
862908001890	HMMPfam hit to PF00009, Protein synthesis factor, GTP-binding, score 1.5e-63
862908001891	PS00301 GTP-binding elongation factors signature.
862908001892	PS00017 ATP/GTP-binding site motif A (P-loop).
862908001893	ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488
862908001894	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
862908001895	ABC transporter; Region: ABC_tran_2; pfam12848
862908001896	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
862908001897	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908001898	ABC transporter signature motif; other site
862908001899	Walker B; other site
862908001900	D-loop; other site
862908001901	H-loop/switch region; other site
862908001902	HMMPfam hit to PF00005, ABC transporter, score 2.4e-37
862908001903	PS00017 ATP/GTP-binding site motif A (P-loop).
862908001904	HMMPfam hit to PF00005, ABC transporter, score 4.9e-32
862908001905	PS00017 ATP/GTP-binding site motif A (P-loop).
862908001906	PS00211 ABC transporters family signature.
862908001907	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
862908001908	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
862908001909	DNA binding residues [nucleotide binding]
862908001910	dimerization interface [polypeptide binding]; other site
862908001911	Response regulator receiver domain; Region: Response_reg; pfam00072
862908001912	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908001913	active site
862908001914	phosphorylation site [posttranslational modification]
862908001915	intermolecular recognition site; other site
862908001916	dimerization interface [polypeptide binding]; other site
862908001917	PilZ domain; Region: PilZ; cl01260
862908001918	HMMPfam hit to PF00196, Bacterial regulatory protein, LuxR, score 9.7e-11
862908001919	HMMPfam hit to PF00072, Response regulator receiver, score 3.8e-27
862908001920	mercuric reductase; Validated; Region: PRK06370
862908001921	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
862908001922	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
862908001923	HMMPfam hit to PF02852, Pyridine nucleotide-disulphide oxidoreductase dimerisation region, score 2.9e-29
862908001924	HMMPfam hit to PF00070, FAD-dependent pyridine nucleotide-disulphide oxidoreductase, score 9.5e-81
862908001925	PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site.
862908001926	3 probable transmembrane helices predicted for BMS0437 by TMHMM2.0 at aa 9-27, 42-64 and 85-104
862908001927	methionine sulfoxide reductase B; Provisional; Region: PRK00222
862908001928	SelR domain; Region: SelR; pfam01641
862908001929	HMMPfam hit to PF01641, Protein of unknown function DUF25, score 1.2e-70
862908001930	Uncharacterized protein family (UPF0093); Region: UPF0093; pfam03653
862908001931	5 probable transmembrane helices predicted for BMS0441 by TMHMM2.0 at aa 10-31, 57-79, 89-106, 127-149 and 154-172
862908001932	HMMPfam hit to PF03653, Conserved hypothetical protein 701, score 2.4e-35
862908001933	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
862908001934	catalytic core [active]
862908001935	HMMPfam hit to PF00300, Phosphoglycerate/bisphosphoglycerate mutase, score 5.4e-23
862908001936	PS00175 Phosphoglycerate mutase family phosphohistidine signature.
862908001937	Phosphoenolpyruvate carboxykinase; Region: PEPCK_ATP; pfam01293
862908001938	phosphoenolpyruvate carboxykinase; Provisional; Region: PRK09344
862908001939	active site
862908001940	metal-binding site [ion binding]
862908001941	nucleotide-binding site [chemical binding]; other site
862908001942	HMMPfam hit to PF01293, Phosphoenolpyruvate carboxykinase (ATP), score 7.9e-209
862908001943	PS00017 ATP/GTP-binding site motif A (P-loop).
862908001944	alanyl-tRNA synthetase; Reviewed; Region: alaS; PRK00252
862908001945	Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: AlaRS_core; cd00673
862908001946	motif 1; other site
862908001947	active site
862908001948	motif 2; other site
862908001949	motif 3; other site
862908001950	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; smart00863
862908001951	DHHA1 domain; Region: DHHA1; pfam02272
862908001952	HMMPfam hit to PF01411, Alanyl-tRNA synthetase, class IIc, score 5.4e-273
862908001953	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
862908001954	HMMPfam hit to PF02272, Phosphoesterase, DHHA1, score 6.4e-11
862908001955	histidyl-tRNA synthetase; Reviewed; Region: hisS; PRK00037
862908001956	Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for...; Region: HisRS-like_core; cd00773
862908001957	dimer interface [polypeptide binding]; other site
862908001958	motif 1; other site
862908001959	active site
862908001960	motif 2; other site
862908001961	motif 3; other site
862908001962	HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: HisRS_anticodon; cd00859
862908001963	anticodon binding site; other site
862908001964	HMMPfam hit to PF00587, tRNA synthetases, class-II (G, H, P and S), score 1.6e-17
862908001965	HMMPfam hit to PF03129, Anticodon-binding, score 3.5e-06
862908001966	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
862908001967	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
862908001968	Signal peptide predicted for BMS0447 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.483 between residues 26 and 27
862908001969	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908001970	HMMPfam hit to PF00561, Alpha/beta hydrolase fold, score 4.3e-24
862908001971	META domain; Region: META; pfam03724
862908001972	HMMPfam hit to PF03724, Protein of unknown function DUF306, score 5.7e-09
862908001973	Signal peptide predicted for BMS0448 by SignalP 2.0 HMM (Signal peptide probability 0.900) with cleavage site probability 0.606 between residues 24 and 25
862908001974	1 probable transmembrane helix predicted for BMS0449 by TMHMM2.0 at aa 15-32
862908001975	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
862908001976	HMMPfam hit to PF00165, Helix-turn-helix, AraC type, score 2.7e-05
862908001977	HMMPfam hit to PF00165, Helix-turn-helix, AraC type, score 0.2
862908001978	methionine sulfoxide reductase A; Provisional; Region: PRK14054
862908001979	HMMPfam hit to PF01625, Peptide methionine sulfoxide reductase, score 2.2e-84
862908001980	Outer membrane efflux protein; Region: OEP; pfam02321
862908001981	Outer membrane efflux protein; Region: OEP; pfam02321
862908001982	Signal peptide predicted for BMS0452 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.591 between residues 18 and 19
862908001983	HMMPfam hit to PF02321, Outer membrane efflux protein, score 0.0021
862908001984	HMMPfam hit to PF02321, Outer membrane efflux protein, score 2.2e-10
862908001985	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
862908001986	Protein export membrane protein; Region: SecD_SecF; cl14618
862908001987	Protein export membrane protein; Region: SecD_SecF; cl14618
862908001988	HMMPfam hit to PF00873, Acriflavin resistance protein, score 4.2e-287
862908001989	10 probable transmembrane helices predicted for BMS0453 by TMHMM2.0 at aa 12-29, 337-356, 363-382, 392-414, 434-456, 529-546, 849-868, 878-897, 952-974 and 984-1006
862908001990	methionine sulfoxide reductase B; Provisional; Region: PRK00222
862908001991	SelR domain; Region: SelR; pfam01641
862908001992	HMMPfam hit to PF01641, Protein of unknown function DUF25, score 1.6e-78
862908001993	Mechanosensitive ion channel; Region: MS_channel; pfam00924
862908001994	HMMPfam hit to PF00924, MscS Mechanosensitive ion channel, score 3.3e-59
862908001995	3 probable transmembrane helices predicted for BMS0455 by TMHMM2.0 at aa 21-43, 68-90 and 95-117
862908001996	Peptidase MA superfamily; Region: Peptidase_MA_2; pfam13485
862908001997	Signal peptide predicted for BMS0456 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.915 between residues 17 and 18
862908001998	FOG: CBS domain [General function prediction only]; Region: COG0517
862908001999	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection...; Region: CBS_pair_BON_assoc; cd04586
862908002000	HMMPfam hit to PF00571, CBS, score 8.8e-16
862908002001	HMMPfam hit to PF00571, CBS, score 1.9e-19
862908002002	CAAX protease self-immunity; Region: Abi; pfam02517
862908002003	HMMPfam hit to PF02517, Abortive infection protein, score 4e-08
862908002004	2 probable transmembrane helices predicted for BMS0460 by TMHMM2.0 at aa 7-24 and 39-61
862908002005	Protein of unknown function (DUF2874); Region: DUF2874; pfam11396
862908002006	Signal peptide predicted for BMS0461 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.939 between residues 16 and 17
862908002007	Signal peptide predicted for BMS0462 by SignalP 2.0 HMM (Signal peptide probability 0.914) with cleavage site probability 0.499 between residues 21 and 22
862908002008	Transcriptional regulator [Transcription]; Region: LysR; COG0583
862908002009	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908002010	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_5; cd08474
862908002011	putative effector binding pocket; other site
862908002012	putative dimerization interface [polypeptide binding]; other site
862908002013	HMMPfam hit to PF03466, LysR, substrate-binding, score 1.3e-33
862908002014	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 8.4e-19
862908002015	PS00044 Bacterial regulatory proteins, lysR family signature.
862908002016	Hydrolases of the alpha/beta superfamily [General function prediction only]; Region: COG1073
862908002017	Signal peptide predicted for BMS0464 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.753 between residues 45 and 46
862908002018	Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]; Region: COG1917
862908002019	Signal peptide predicted for BMS0465 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.644 between residues 26 and 27
862908002020	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908002021	Uncharacterized conserved protein [Function unknown]; Region: COG4925
862908002022	Signal peptide predicted for BMS0466 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.994 between residues 28 and 29
862908002023	1 probable transmembrane helix predicted for BMS0466 by TMHMM2.0 at aa 7-29
862908002024	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557
862908002025	1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs; Region: ChcA_like_SDR_c; cd05359
862908002026	putative NAD(P) binding site [chemical binding]; other site
862908002027	active site
862908002028	HMMPfam hit to PF00106, Short-chain dehydrogenase/reductase SDR, score 3.5e-57
862908002029	redox-sensitive transcriptional activator SoxR; Region: SoxR; TIGR01950
862908002030	Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600
862908002031	DNA binding residues [nucleotide binding]
862908002032	HMMPfam hit to PF00376, Bacterial regulatory protein, MerR, score 2.4e-09
862908002033	PS00552 Bacterial regulatory proteins, merR family signature.
862908002034	Signal peptide predicted for BMS0470 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.920 between residues 18 and 19
862908002035	HMMPfam hit to PF00144, Beta-lactamase, score 9e-07
862908002036	Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]; Region: PepO; COG3590
862908002037	Peptidase family M13 includes neprilysin, endothelin-converting enzyme I; Region: M13; cd08662
862908002038	active site
862908002039	Zn binding site [ion binding]; other site
862908002040	HMMPfam hit to PF01431, Peptidase M13, neprilysin, score 1.6e-55
862908002041	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908002042	HMMPfam hit to PF05649, Peptidase M13, score 2.1e-10
862908002043	PS00215 Mitochondrial energy transfer proteins signature.
862908002044	succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; Region: sdhC_b558_fam; TIGR02046
862908002045	Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum. SQR catalyzes the oxidation of succinate to fumarate...; Region: SQR_TypeB_2_TM; cd03498
862908002046	putative Iron-sulfur protein interface [polypeptide binding]; other site
862908002047	proximal heme binding site [chemical binding]; other site
862908002048	distal heme binding site [chemical binding]; other site
862908002049	putative dimer interface [polypeptide binding]; other site
862908002050	Signal peptide predicted for BMS0473 by SignalP 2.0 HMM (Signal peptide probability 0.813) with cleavage site probability 0.711 between residues 24 and 25
862908002051	5 probable transmembrane helices predicted for BMS0473 by TMHMM2.0 at aa 13-32, 52-74, 103-125, 156-175 and 195-217
862908002052	succinate dehydrogenase flavoprotein subunit; Reviewed; Region: sdhA; PRK07573
862908002053	L-aspartate oxidase; Provisional; Region: PRK06175
862908002054	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
862908002055	HMMPfam hit to PF00890, Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal, score 2e-63
862908002056	HMMPfam hit to PF02910, Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal, score 2e-26
862908002057	succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated; Region: PRK07570
862908002058	2Fe-2S iron-sulfur cluster binding domain; Region: Fer2_3; pfam13085
862908002059	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
862908002060	HMMPfam hit to PF00037, 4Fe-4S ferredoxin, iron-sulfur binding, score 0.001
862908002061	Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]; Region: CitT; COG0471
862908002062	Anion permease ArsB/NhaD.  These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life.  A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cd00625
862908002063	transmembrane helices; other site
862908002064	HMMPfam hit to PF00939, Sodium/sulphate symporter, score 2.6e-230
862908002065	12 probable transmembrane helices predicted for BMS0476 by TMHMM2.0 at aa 7-24, 44-66, 79-101, 111-130, 176-198, 218-240, 268-285, 290-312, 325-347, 357-379, 391-413 and 446-468
862908002066	Phosphatidylglycerophosphate synthase [Lipid metabolism]; Region: PgsA; COG0558
862908002067	5 probable transmembrane helices predicted for BMS0477 by TMHMM2.0 at aa 28-50, 59-81, 121-143, 164-181 and 185-207
862908002068	HMMPfam hit to PF01066, CDP-alcohol phosphatidyltransferase, score 0.0037
862908002069	Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]; Region: COG4589
862908002070	CDP-diglyceride synthetase [Lipid metabolism]; Region: CdsA; COG0575
862908002071	8 probable transmembrane helices predicted for BMS0478 by TMHMM2.0 at aa 13-35, 55-77, 98-116, 121-143, 156-173, 188-207, 228-247 and 257-276
862908002072	HMMPfam hit to PF01148, Phosphatidate cytidylyltransferase, score 1.9e-45
862908002073	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
862908002074	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
862908002075	putative acyl-acceptor binding pocket; other site
862908002076	1 probable transmembrane helix predicted for BMS0479 by TMHMM2.0 at aa 5-27
862908002077	HMMPfam hit to PF01553, Phospholipid/glycerol acyltransferase, score 1.2e-06
862908002078	Multidrug resistance efflux transporter; Region: EmrE; pfam13536
862908002079	4 probable transmembrane helices predicted for BMS0480 by TMHMM2.0 at aa 5-27, 37-59, 66-88 and 93-115
862908002080	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908002081	NAD dependent epimerase/dehydratase family; Region: Epimerase; pfam01370
862908002082	NAD(P) binding site [chemical binding]; other site
862908002083	active site
862908002084	Signal peptide predicted for BMS0481 by SignalP 2.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.537 between residues 28 and 29
862908002085	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
862908002086	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like; Region: LPLAT_MGAT-like; cd07987
862908002087	putative acyl-acceptor binding pocket; other site
862908002088	HMMPfam hit to PF01553, Phospholipid/glycerol acyltransferase, score 1.7e-14
862908002089	2 probable transmembrane helices predicted for BMS0484 by TMHMM2.0 at aa 5-27 and 47-69
862908002090	YihA (EngB) GTPase family; Region: YihA_EngB; cd01876
862908002091	G1 box; other site
862908002092	GTP/Mg2+ binding site [chemical binding]; other site
862908002093	Switch I region; other site
862908002094	G2 box; other site
862908002095	G3 box; other site
862908002096	Switch II region; other site
862908002097	G4 box; other site
862908002098	G5 box; other site
862908002099	HMMPfam hit to PF01926, GTP-binding protein, HSR1-related, score 7.8e-27
862908002100	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002101	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908002102	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
862908002103	Walker A motif; other site
862908002104	ATP binding site [chemical binding]; other site
862908002105	Walker B motif; other site
862908002106	arginine finger; other site
862908002107	HMMPfam hit to PF00158, Sigma-54 factor, interaction region, score 6.1e-68
862908002108	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
862908002109	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002110	2 probable transmembrane helices predicted for BMS0487 by TMHMM2.0 at aa 105-127 and 131-150
862908002111	Signal peptide predicted for BMS0488 by SignalP 2.0 HMM (Signal peptide probability 0.757) with cleavage site probability 0.616 between residues 24 and 25
862908002112	acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated; Region: PRK05724
862908002113	acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional; Region: accA; CHL00198
862908002114	HMMPfam hit to PF03255, Acetyl-CoA carboxylase, alpha subunit, score 9.4e-81
862908002115	hypothetical protein; Provisional; Region: PRK11820
862908002116	YicC-like family, N-terminal region; Region: YicC_N; pfam03755
862908002117	Domain of unknown function (DUF1732); Region: DUF1732; pfam08340
862908002118	HMMPfam hit to PF03755, Conserved hypothetical protein 255, score 4.9e-22
862908002119	PS00217 Sugar transport proteins signature 2.
862908002120	Guanylate kinase [Nucleotide transport and metabolism]; Region: Gmk; COG0194
862908002121	Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine...; Region: GMPK; cd00071
862908002122	catalytic site [active]
862908002123	G-X2-G-X-G-K; other site
862908002124	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002125	PS00856 Guanylate kinase signature.
862908002126	HMMPfam hit to PF00625, Guanylate kinase, score 3e-30
862908002127	Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]; Region: SpoT; COG0317
862908002128	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
862908002129	Zn2+ binding site [ion binding]; other site
862908002130	Mg2+ binding site [ion binding]; other site
862908002131	Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399
862908002132	synthetase active site [active]
862908002133	NTP binding site [chemical binding]; other site
862908002134	metal binding site [ion binding]; metal-binding site
862908002135	TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after...; Region: TGS_RelA_SpoT; cd01668
862908002136	ACT  domain found C-terminal of the RelA/SpoT domains; Region: ACT_RelA-SpoT; cd04876
862908002137	PS00018 EF-hand calcium-binding domain.
862908002138	HMMPfam hit to PF01966, Metal-dependent phosphohydrolase, HD subdomain, score 2.2e-12
862908002139	HMMPfam hit to PF04607, RelA/SpoT, score 1.3e-48
862908002140	HMMPfam hit to PF02824, TGS, score 3.9e-29
862908002141	HMMPfam hit to PF01842, Amino acid-binding ACT, score 2.1e-09
862908002142	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
862908002143	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
862908002144	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
862908002145	YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been...; Region: YdcF-like; cd06259
862908002146	putative active site [active]
862908002147	HMMPfam hit to PF02698, Protein of unknown function DUF218, score 3.5e-10
862908002148	1 probable transmembrane helix predicted for BMS0495 by TMHMM2.0 at aa 21-43
862908002149	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
862908002150	homotrimer interaction site [polypeptide binding]; other site
862908002151	putative active site [active]
862908002152	HMMPfam hit to PF01042, Endoribonuclease L-PSP, score 9.5e-49
862908002153	bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed; Region: PRK07232
862908002154	Malic enzyme, N-terminal domain; Region: malic; pfam00390
862908002155	NAD(P) binding domain of malic enzyme (ME), subgroup 2; Region: NAD_bind_2_malic_enz; cd05311
862908002156	putative NAD(P) binding site [chemical binding]; other site
862908002157	Phosphotransacetylase [Energy production and conversion]; Region: Pta; COG0280
862908002158	HMMPfam hit to PF01515, Phosphate acetyl/butaryl transferase, score 9.4e-85
862908002159	HMMPfam hit to PF03949, Malic oxidoreductase, score 1.9e-126
862908002160	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908002161	HMMPfam hit to PF00390, Malic oxidoreductase, score 3.3e-75
862908002162	Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain; Region: SLC5sbd; cd10322
862908002163	Na binding site [ion binding]; other site
862908002164	12 probable transmembrane helices predicted for BMS0498 by TMHMM2.0 at aa 15-37, 65-87, 92-114, 144-166, 176-195, 202-224, 234-256, 277-299, 326-348, 368-385, 395-414 and 452-469
862908002165	HMMPfam hit to PF00474, Na+/solute symporter, score 4e-07
862908002166	Transcriptional regulator [Transcription]; Region: LysR; COG0583
862908002167	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908002168	The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_OxyR; cd08411
862908002169	dimerization interface [polypeptide binding]; other site
862908002170	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 7.1e-15
862908002171	PS00044 Bacterial regulatory proteins, lysR family signature.
862908002172	HMMPfam hit to PF03466, LysR, substrate-binding, score 7.9e-28
862908002173	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
862908002174	Signal peptide predicted for BMS0500 by SignalP 2.0 HMM (Signal peptide probability 0.687) with cleavage site probability 0.294 between residues 28 and 29
862908002175	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908002176	PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site.
862908002177	HMMPfam hit to PF04151, Peptidase, archaeal and bacterial C-terminal, score 1.1e-05
862908002178	HMMPfam hit to PF04151, Peptidase, archaeal and bacterial C-terminal, score 7e-13
862908002179	putative hydrolase; Provisional; Region: PRK10985
862908002180	PS01133 Uncharacterized protein family UPF0017 signature.
862908002181	Glycosyltransferase 4 (GT4) includes both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases. They catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound...; Region: GT_MraY-like; cl10571
862908002182	Mg++ binding site [ion binding]; other site
862908002183	11 probable transmembrane helices predicted for BMS0502 by TMHMM2.0 at aa 15-37, 57-79, 89-106, 118-137, 142-161, 168-187, 192-209, 216-238, 248-270, 306-325 and 330-347
862908002184	ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]; Region: COG1123
862908002185	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
862908002186	Walker A/P-loop; other site
862908002187	ATP binding site [chemical binding]; other site
862908002188	Q-loop/lid; other site
862908002189	ABC transporter signature motif; other site
862908002190	Walker B; other site
862908002191	D-loop; other site
862908002192	H-loop/switch region; other site
862908002193	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
862908002194	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
862908002195	Walker A/P-loop; other site
862908002196	ATP binding site [chemical binding]; other site
862908002197	Q-loop/lid; other site
862908002198	ABC transporter signature motif; other site
862908002199	Walker B; other site
862908002200	D-loop; other site
862908002201	H-loop/switch region; other site
862908002202	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
862908002203	HMMPfam hit to PF00005, ABC transporter, score 2.2e-63
862908002204	PS00211 ABC transporters family signature.
862908002205	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002206	HMMPfam hit to PF00005, ABC transporter, score 5e-60
862908002207	PS00211 ABC transporters family signature.
862908002208	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002209	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908002210	active site
862908002211	phosphorylation site [posttranslational modification]
862908002212	intermolecular recognition site; other site
862908002213	HMMPfam hit to PF00072, Response regulator receiver, score 9.8e-09
862908002214	Signal peptide predicted for BMS0505 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.972 between residues 28 and 29
862908002215	Signal peptide predicted for BMS0506 by SignalP 2.0 HMM (Signal peptide probability 0.856) with cleavage site probability 0.764 between residues 24 and 25
862908002216	Transcriptional regulator [Transcription]; Region: LysR; COG0583
862908002217	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908002218	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
862908002219	dimerization interface [polypeptide binding]; other site
862908002220	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 8.8e-21
862908002221	PS00044 Bacterial regulatory proteins, lysR family signature.
862908002222	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908002223	Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup; Region: M14_ASTE_ASPA_like_1; cd06251
862908002224	Succinylglutamate desuccinylase / Aspartoacylase family; Region: AstE_AspA; pfam04952
862908002225	putative active site [active]
862908002226	Zn binding site [ion binding]; other site
862908002227	HMMPfam hit to PF04952, Succinylglutamate desuccinylase/aspartoacylase, score 5.2e-44
862908002228	Bacterial extracellular solute-binding protein; Region: SBP_bac_11; pfam13531
862908002229	Bacterial extracellular solute-binding protein; Region: SBP_bac_1; cl17199
862908002230	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
862908002231	dimer interface [polypeptide binding]; other site
862908002232	conserved gate region; other site
862908002233	putative PBP binding loops; other site
862908002234	ABC-ATPase subunit interface; other site
862908002235	HMMPfam hit to PF00528, Binding-protein-dependent transport systems inner membrane component, score 2.4e-20
862908002236	Signal peptide predicted for BMS0511 by SignalP 2.0 HMM (Signal peptide probability 0.749) with cleavage site probability 0.366 between residues 26 and 27
862908002237	5 probable transmembrane helices predicted for BMS0511 by TMHMM2.0 at aa 10-32, 39-61, 76-98, 142-164 and 194-216
862908002238	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
862908002239	molybdenum ABC transporter, ATP-binding protein; Region: modC_ABC; TIGR02142
862908002240	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908002241	Walker A/P-loop; other site
862908002242	ATP binding site [chemical binding]; other site
862908002243	Q-loop/lid; other site
862908002244	ABC transporter signature motif; other site
862908002245	Walker B; other site
862908002246	D-loop; other site
862908002247	H-loop/switch region; other site
862908002248	HMMPfam hit to PF00005, ABC transporter, score 9.5e-46
862908002249	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002250	Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]; Region: SerA; COG0111
862908002251	Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Region: PGDH_4; cd12173
862908002252	ligand binding site [chemical binding]; other site
862908002253	NAD binding site [chemical binding]; other site
862908002254	dimerization interface [polypeptide binding]; other site
862908002255	catalytic site [active]
862908002256	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region, score 0.00018
862908002257	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding, score 4.6e-60
862908002258	PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.
862908002259	PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2.
862908002260	PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3.
862908002261	Adenylosuccinate synthetase; Region: Adenylsucc_synt; smart00788
862908002262	Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the...; Region: AdSS; cd03108
862908002263	GDP-binding site [chemical binding]; other site
862908002264	ACT binding site; other site
862908002265	IMP binding site; other site
862908002266	HMMPfam hit to PF00709, Adenylosuccinate synthetase, score 7.9e-177
862908002267	PS01266 Adenylosuccinate synthetase GTP-binding site.
862908002268	PS00513 Adenylosuccinate synthetase active site.
862908002269	2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]; Region: MiaB; COG0621
862908002270	Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919
862908002271	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908002272	FeS/SAM binding site; other site
862908002273	HMMPfam hit to PF04055, Radical SAM, score 1.4e-28
862908002274	PS01278 Uncharacterized protein family UPF0004 signature.
862908002275	HMMPfam hit to PF00919, Protein of unknown function UPF0004, score 7e-34
862908002276	Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]; Region: CzcD; COG1230
862908002277	6 probable transmembrane helices predicted for BMS0518 by TMHMM2.0 at aa 22-44, 54-71, 83-102, 112-134, 154-172 and 177-199
862908002278	HMMPfam hit to PF01545, Cation efflux protein, score 1.8e-06
862908002279	Fic family protein [Function unknown]; Region: COG3177
862908002280	Fic/DOC family; Region: Fic; pfam02661
862908002281	HMMPfam hit to PF02661, Filamentation induced by cAMP protein Fic, score 1e-16
862908002282	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002283	PepSY-associated TM helix; Region: PepSY_TM_1; pfam13172
862908002284	Uncharacterized iron-regulated membrane protein [Function unknown]; Region: PiuB; COG3182
862908002285	6 probable transmembrane helices predicted for BMS0520 by TMHMM2.0 at aa 20-42, 115-137, 157-179, 192-214, 339-361 and 389-411
862908002286	HMMPfam hit to PF03929, PepSY-associated TM helix, score 15
862908002287	HMMPfam hit to PF03929, PepSY-associated TM helix, score 0.26
862908002288	HMMPfam hit to PF03929, PepSY-associated TM helix, score 0.0032
862908002289	HMMPfam hit to PF03929, PepSY-associated TM helix, score 4.4
862908002290	2'-5' RNA ligase superfamily; Region: 2_5_RNA_ligase2; pfam13563
862908002291	Signal peptide predicted for BMS0521 by SignalP 2.0 HMM (Signal peptide probability 0.933) with cleavage site probability 0.793 between residues 18 and 19
862908002292	Signal peptide predicted for BMS0522 by SignalP 2.0 HMM (Signal peptide probability 0.962) with cleavage site probability 0.920 between residues 28 and 29
862908002293	TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783
862908002294	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
862908002295	N-terminal plug; other site
862908002296	ligand-binding site [chemical binding]; other site
862908002297	HMMPfam hit to PF00593, TonB-dependent receptor, score 6.6e-20
862908002298	HMMPfam hit to PF07715, , score 1.2e-13
862908002299	Signal peptide predicted for BMS0523 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.530 between residues 26 and 27
862908002300	Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]; Region: IucD; COG3486
862908002301	Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: RhbC; COG4264
862908002302	IucA / IucC family; Region: IucA_IucC; pfam04183
862908002303	Ferric iron reductase FhuF-like transporter; Region: FhuF; pfam06276
862908002304	HMMPfam hit to PF04183, IucA/IucC, score 1.2e-95
862908002305	PS01121 Caspase family histidine active site.
862908002306	Acetyltransferase (GNAT) domain; Region: Acetyltransf_8; pfam13523
862908002307	Siderophore biosynthesis protein domain; Region: AlcB; smart01006
862908002308	IucA / IucC family; Region: IucA_IucC; pfam04183
862908002309	Ferric iron reductase FhuF-like transporter; Region: FhuF; pfam06276
862908002310	HMMPfam hit to PF04183, IucA/IucC, score 7.9e-57
862908002311	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
862908002312	Major Facilitator Superfamily; Region: MFS_1; pfam07690
862908002313	putative substrate translocation pore; other site
862908002314	10 probable transmembrane helices predicted for BMS0529 by TMHMM2.0 at aa 21-42, 52-74, 86-108, 178-200, 231-253, 268-290, 297-314, 324-346, 363-385 and 395-412
862908002315	HMMPfam hit to PF07690, , score 1.5e-29
862908002316	Signal peptide predicted for BMS0530 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 19 and 20
862908002317	8 probable transmembrane helices predicted for BMS0532 by TMHMM2.0 at aa 7-25, 40-59, 72-89, 99-121, 134-156, 166-184, 205-224 and 237-259
862908002318	Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes.  All members...; Region: cytidine_deaminase-like; cl00269
862908002319	active site
862908002320	Zn binding site [ion binding]; other site
862908002321	HMMPfam hit to PF00383, Cytidine/deoxycytidylate deaminase, zinc-binding region, score 2.4e-19
862908002322	PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature.
862908002323	Protein of unknown function (DUF2799); Region: DUF2799; pfam10973
862908002324	Signal peptide predicted for BMS0534 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.373 between residues 23 and 24
862908002325	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
862908002326	Signal peptide predicted for BMS0535 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.562 between residues 29 and 30
862908002327	1 probable transmembrane helix predicted for BMS0536 by TMHMM2.0 at aa 4-21
862908002328	Uncharacterized membrane protein, putative virulence factor [General function prediction only]; Region: MviN; COG0728
862908002329	MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_MurJ_like; cd13123
862908002330	HMMPfam hit to PF03023, Virulence factor MVIN-like, score 3.9e-100
862908002331	12 probable transmembrane helices predicted for BMS0537 by TMHMM2.0 at aa 89-111, 135-157, 164-186, 196-218, 256-278, 282-304, 317-339, 359-381, 393-412, 417-439, 451-473 and 488-510
862908002332	PS00041 Bacterial regulatory proteins, araC family signature.
862908002333	1 probable transmembrane helix predicted for BMS0539 by TMHMM2.0 at aa 7-26
862908002334	10 probable transmembrane helices predicted for BMS0540 by TMHMM2.0 at aa 12-34, 76-95, 171-193, 208-230, 237-259, 269-291, 298-320, 335-357, 364-386 and 401-423
862908002335	Formyltransferase, catalytic core domain; Region: FMT_core; cl00395
862908002336	active site
862908002337	substrate binding site [chemical binding]; other site
862908002338	cosubstrate binding site; other site
862908002339	catalytic site [active]
862908002340	HMMPfam hit to PF00551, Formyl transferase, N-terminal, score 6.8e-06
862908002341	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
862908002342	peptide synthase; Provisional; Region: PRK09274
862908002343	Uncharacterized subfamily of fatty acid CoA ligase (FACL); Region: FACL_like_1; cd05910
862908002344	acyl-activating enzyme (AAE) consensus motif; other site
862908002345	putative AMP binding site [chemical binding]; other site
862908002346	putative active site [active]
862908002347	putative CoA binding site [chemical binding]; other site
862908002348	HMMPfam hit to PF00501, AMP-dependent synthetase and ligase, score 1.2e-53
862908002349	PS00455 Putative AMP-binding domain signature.
862908002350	prenyltransferase; Provisional; Region: ubiA; PRK13592
862908002351	HMMPfam hit to PF01040, UbiA prenyltransferase, score 0.0033
862908002352	8 probable transmembrane helices predicted for BMS0543 by TMHMM2.0 at aa 31-48, 52-70, 114-136, 151-173, 185-202, 225-247, 254-273 and 283-300
862908002353	phosphoenolpyruvate synthase; Validated; Region: PRK06241
862908002354	Pyruvate phosphate dikinase, PEP/pyruvate binding domain; Region: PPDK_N; pfam01326
862908002355	PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; pfam00391
862908002356	HMMPfam hit to PF01326, Pyruvate phosphate dikinase, PEP/pyruvate-binding, score 3.3e-37
862908002357	HMMPfam hit to PF00391, PEP-utilising enzyme, mobile region, score 5.3e-28
862908002358	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
862908002359	excinuclease ABC subunit C; Validated; Region: uvrC; PRK00558
862908002360	Catalytic GIY-YIG domain of nucleotide excision repair endonucleases UvrC, Cho, and similar proteins; Region: GIY-YIG_UvrC_Cho; cd10434
862908002361	GIY-YIG motif/motif A; other site
862908002362	active site
862908002363	catalytic site [active]
862908002364	putative DNA binding site [nucleotide binding]; other site
862908002365	metal binding site [ion binding]; metal-binding site
862908002366	UvrB/uvrC motif; Region: UVR; pfam02151
862908002367	UvrC Helix-hairpin-helix N-terminal; Region: UvrC_HhH_N; pfam08459
862908002368	HMMPfam hit to PF01541, Excinuclease ABC, C subunit, N-terminal, score 9.9e-31
862908002369	HMMPfam hit to PF02151, UvrB/UvrC protein, score 0.0014
862908002370	Family 4 Uracil-DNA glycosylase (UDG), found exclusively in thermophilic organisms; Region: UDG_F4_TTUDGA_like; cd10030
862908002371	Stage II sporulation protein; Region: SpoIID; pfam08486
862908002372	SpoIID/LytB domain; Region: SpoIID_LytB; TIGR02669
862908002373	Signal peptide predicted for BMS0549 by SignalP 2.0 HMM (Signal peptide probability 0.829) with cleavage site probability 0.511 between residues 20 and 21
862908002374	Signal peptide predicted for BMS0550 by SignalP 2.0 HMM (Signal peptide probability 0.778) with cleavage site probability 0.331 between residues 23 and 24
862908002375	4 probable transmembrane helices predicted for BMS0552 by TMHMM2.0 at aa 32-51, 85-107, 180-202 and 235-257
862908002376	Thioredoxin; Region: Thioredoxin_4; pfam13462
862908002377	DSBA-like thioredoxin domain; Region: DSBA; pfam01323
862908002378	Signal peptide predicted for BMS0553 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.511 between residues 23 and 24
862908002379	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908002380	HMMPfam hit to PF01323, DSBA oxidoreductase, score 5e-21
862908002381	flagellar basal body-associated protein FliL; Reviewed; Region: fliL; PRK07718
862908002382	Flagellar basal body-associated protein FliL; Region: FliL; pfam03748
862908002383	HMMPfam hit to PF03748, Flagellar basal body-associated protein FliL, score 4.2e-21
862908002384	1 probable transmembrane helix predicted for BMS0555 by TMHMM2.0 at aa 28-50
862908002385	flagellar motor switch protein FliM; Validated; Region: fliM; PRK06666
862908002386	Surface presentation of antigens (SPOA); Region: SpoA; pfam01052
862908002387	HMMPfam hit to PF02154, Flagellar motor switch protein FliM, score 2.2e-67
862908002388	HMMPfam hit to PF01052, Surface presentation of antigens (SPOA) protein, score 0.00016
862908002389	Surface presentation of antigens (SPOA); Region: SpoA; cl00819
862908002390	HMMPfam hit to PF01052, Surface presentation of antigens (SPOA) protein, score 7.3e-34
862908002391	flagellar biosynthetic protein FliO; Region: FliO_TIGR; TIGR03500
862908002392	Signal peptide predicted for BMS0558 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 23 and 24
862908002393	1 probable transmembrane helix predicted for BMS0558 by TMHMM2.0 at aa 215-237
862908002394	flagellar biosynthesis protein FliP; Reviewed; Region: fliP; PRK05699
862908002395	Signal peptide predicted for BMS0559 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 between residues 26 and 27
862908002396	4 probable transmembrane helices predicted for BMS0559 by TMHMM2.0 at aa 54-76, 91-108, 194-216 and 231-248
862908002397	HMMPfam hit to PF00813, Type III secretion system inner membrane P protein, score 4.4e-105
862908002398	PS01060 Flagella transport protein fliP family signature 1.
862908002399	PS01061 Flagella transport protein fliP family signature 2.
862908002400	flagellar biosynthesis protein FliQ; Validated; Region: fliQ; PRK05700
862908002401	HMMPfam hit to PF01313, Bacterial export protein FliQ, family 3, score 4e-30
862908002402	2 probable transmembrane helices predicted for BMS0560 by TMHMM2.0 at aa 15-37 and 50-69
862908002403	Bacterial export proteins, family 1; Region: Bac_export_1; cl00734
862908002404	HMMPfam hit to PF01311, Type III secretion system inner membrane R protein, score 7.8e-13
862908002405	6 probable transmembrane helices predicted for BMS0561 by TMHMM2.0 at aa 10-32, 39-57, 72-94, 136-158, 186-208 and 215-237
862908002406	flagellar biosynthesis protein FlhB; Reviewed; Region: flhB; PRK05702
862908002407	Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]; Region: COG2257
862908002408	HMMPfam hit to PF01312, Type III secretion exporter, score 6.4e-117
862908002409	4 probable transmembrane helices predicted for BMS0562 by TMHMM2.0 at aa 35-57, 96-118, 145-167 and 192-214
862908002410	flagellar biosynthesis protein FlhA; Validated; Region: flhA; PRK06012
862908002411	FHIPEP family; Region: FHIPEP; pfam00771
862908002412	6 probable transmembrane helices predicted for BMS0563 by TMHMM2.0 at aa 18-40, 42-61, 116-138, 206-228, 248-267 and 288-310
862908002413	HMMPfam hit to PF00771, Bacterial type III secretion FHIPEP, score 0
862908002414	PS00994 Bacterial export FHIPEP family signature.
862908002415	SRP54-type protein, GTPase domain; Region: SRP54; smart00962
862908002416	HMMPfam hit to PF00448, GTP-binding signal recognition particle SRP54, G-domain, score 3.5e-05
862908002417	CobQ/CobB/MinD/ParA nucleotide binding domain; Region: CbiA; pfam01656
862908002418	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
862908002419	HMMPfam hit to PF01656, Cobyrinic acid a,c-diamide synthase, score 1.7e-14
862908002420	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002421	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
862908002422	RNA polymerase sigma factor, FliA/WhiG family; Region: FliA_WhiG; TIGR02479
862908002423	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
862908002424	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
862908002425	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
862908002426	DNA binding residues [nucleotide binding]
862908002427	HMMPfam hit to PF04542, Sigma-70 region 2, score 2.6e-19
862908002428	PS00715 Sigma-70 factors family signature 1.
862908002429	HMMPfam hit to PF04539, Sigma-70 region 3, score 0.00012
862908002430	HMMPfam hit to PF04545, Sigma-70 region 4, score 2.1e-20
862908002431	PS00716 Sigma-70 factors family signature 2.
862908002432	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
862908002433	2 probable transmembrane helices predicted for BMS0568 by TMHMM2.0 at aa 10-32 and 266-288
862908002434	Signal peptide predicted for BMS0569 by SignalP 2.0 HMM (Signal peptide probability 0.971) with cleavage site probability 0.730 between residues 21 and 22
862908002435	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908002436	Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis; Region: DPCK; cd02022
862908002437	dephospho-CoA kinase; Region: TIGR00152
862908002438	CoA-binding site [chemical binding]; other site
862908002439	ATP-binding [chemical binding]; other site
862908002440	HMMPfam hit to PF01121, Dephospho-CoA kinase, score 3.3e-40
862908002441	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002442	nucleoside triphosphate pyrophosphohydrolase; Reviewed; Region: mazG; PRK09562
862908002443	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) N-terminal tandem-domain of MazG proteins from Escherichia coli and bacterial homologs; Region: NTP-PPase_MazG_Nterm; cd11528
862908002444	homodimer interface [polypeptide binding]; other site
862908002445	metal binding site [ion binding]; metal-binding site
862908002446	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) C-terminal tandem-domain of MazG proteins from Escherichia coli and bacterial homologs' Region: NTP-PPase_MazG_Cterm; cd11529
862908002447	homodimer interface [polypeptide binding]; other site
862908002448	active site
862908002449	putative chemical substrate binding site [chemical binding]; other site
862908002450	metal binding site [ion binding]; metal-binding site
862908002451	HMMPfam hit to PF03819, MazG nucleotide pyrophosphohydrolase, score 3.6e-06
862908002452	HMMPfam hit to PF03819, MazG nucleotide pyrophosphohydrolase, score 2.2e-33
862908002453	Uncharacterized protein family UPF0054; Region: UPF0054; cl00402
862908002454	HMMPfam hit to PF02130, Protein of unknown function UPF0054, score 1.3e-27
862908002455	peptide chain release factor 2; Validated; Region: prfB; PRK00578
862908002456	This domain is found in peptide chain release factors; Region: PCRF; smart00937
862908002457	RF-1 domain; Region: RF-1; pfam00472
862908002458	HMMPfam hit to PF03462, PCRF, score 1.4e-41
862908002459	HMMPfam hit to PF00472, Class I peptide chain release factor, score 6.9e-66
862908002460	PS00745 Prokaryotic-type class I peptide chain release factors signature.
862908002461	ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]; Region: LolE; COG4591
862908002462	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
862908002463	FtsX-like permease family; Region: FtsX; pfam02687
862908002464	4 probable transmembrane helices predicted for BMS0575 by TMHMM2.0 at aa 19-41, 266-288, 313-335 and 364-386
862908002465	HMMPfam hit to PF02687, Protein of unknown function DUF214, score 4.6e-06
862908002466	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
862908002467	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
862908002468	Walker A/P-loop; other site
862908002469	ATP binding site [chemical binding]; other site
862908002470	Q-loop/lid; other site
862908002471	ABC transporter signature motif; other site
862908002472	Walker B; other site
862908002473	D-loop; other site
862908002474	H-loop/switch region; other site
862908002475	HMMPfam hit to PF00005, ABC transporter, score 1.8e-46
862908002476	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002477	PS00211 ABC transporters family signature.
862908002478	outer membrane protein assembly complex, YaeT protein; Region: OM_YaeT; TIGR03303
862908002479	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
862908002480	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
862908002481	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
862908002482	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
862908002483	Surface antigen variable number repeat; Region: Surf_Ag_VNR; pfam07244
862908002484	Surface antigen; Region: Bac_surface_Ag; pfam01103
862908002485	Signal peptide predicted for BMS0577 by SignalP 2.0 HMM (Signal peptide probability 0.967) with cleavage site probability 0.967 between residues 34 and 35
862908002486	1 probable transmembrane helix predicted for BMS0577 by TMHMM2.0 at aa 13-35
862908002487	HMMPfam hit to PF07244, Surface antigen variable number, score 0.62
862908002488	HMMPfam hit to PF07244, Surface antigen variable number, score 0.00052
862908002489	HMMPfam hit to PF07244, Surface antigen variable number, score 8e-05
862908002490	HMMPfam hit to PF07244, Surface antigen variable number, score 6.6e-06
862908002491	HMMPfam hit to PF07244, Surface antigen variable number, score 2.7e-05
862908002492	HMMPfam hit to PF01103, Bacterial surface antigen (D15), score 6.1e-52
862908002493	Outer membrane protein (OmpH-like); Region: OmpH; smart00935
862908002494	Signal peptide predicted for BMS0578 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.990 between residues 26 and 27
862908002495	HMMPfam hit to PF03938, Outer membrane protein (OmpH-like), score 5.5e-10
862908002496	UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2; Region: LbH_LpxD; cd03352
862908002497	trimer interface [polypeptide binding]; other site
862908002498	active site
862908002499	UDP-GlcNAc binding site [chemical binding]; other site
862908002500	lipid binding site [chemical binding]; lipid-binding site
862908002501	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 0.0078
862908002502	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 0.0021
862908002503	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 0.028
862908002504	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 0.98
862908002505	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 0.85
862908002506	PS00101 Hexapeptide-repeat containing-transferases signature.
862908002507	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 4.7
862908002508	FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid...; Region: FabZ; cd01288
862908002509	HMMPfam hit to PF03061, Thioesterase superfamily, score 3.3e-11
862908002510	UDP-N-acetylglucosamine acyltransferase; Provisional; Region: PRK05289
862908002511	UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic...; Region: LbH_UDP-GlcNAc_AT; cd03351
862908002512	active site
862908002513	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 0.083
862908002514	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 0.016
862908002515	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 3
862908002516	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 27
862908002517	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 9
862908002518	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 4.5
862908002519	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 1.4
862908002520	PS00101 Hexapeptide-repeat containing-transferases signature.
862908002521	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 65
862908002522	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
862908002523	Oxidoreductase family, NAD-binding Rossmann fold; Region: GFO_IDH_MocA; pfam01408
862908002524	Oxidoreductase family, C-terminal alpha/beta domain; Region: GFO_IDH_MocA_C; pfam02894
862908002525	HMMPfam hit to PF01408, Oxidoreductase, N-terminal, score 1.1e-25
862908002526	HMMPfam hit to PF02894, Oxidoreductase, C-terminal, score 0.063
862908002527	Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]; Region: LpxB; COG0763
862908002528	ipid-A-disaccharide synthase; Provisional; Region: PRK14089
862908002529	HMMPfam hit to PF02684, Glycosyl transferase, family 19, score 3e-63
862908002530	Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]; Region: LpxK; COG1663
862908002531	Tetraacyldisaccharide-1-P 4'-kinase; Region: LpxK; pfam02606
862908002532	HMMPfam hit to PF02606, Tetraacyldisaccharide-1-P 4'-kinase, score 8.1e-42
862908002533	Protein of unknown function (DUF3108); Region: DUF3108; pfam11306
862908002534	Signal peptide predicted for BMS0585 by SignalP 2.0 HMM (Signal peptide probability 0.920) with cleavage site probability 0.598 between residues 21 and 22
862908002535	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
862908002536	30S ribosomal protein S1; Reviewed; Region: rpsA; PRK06299
862908002537	S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec1_hs1; cd05687
862908002538	RNA binding site [nucleotide binding]; other site
862908002539	S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec2_hs2; cd04465
862908002540	RNA binding site [nucleotide binding]; other site
862908002541	S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec3; cd05688
862908002542	RNA binding site [nucleotide binding]; other site
862908002543	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
862908002544	RNA binding site [nucleotide binding]; other site
862908002545	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
862908002546	RNA binding site [nucleotide binding]; other site
862908002547	S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase  is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA; Region: S1_PNPase; cd04472
862908002548	RNA binding site [nucleotide binding]; other site
862908002549	domain interface; other site
862908002550	HMMPfam hit to PF00575, RNA binding S1, score 4.8e-11
862908002551	HMMPfam hit to PF00575, RNA binding S1, score 1.7e-14
862908002552	HMMPfam hit to PF00575, RNA binding S1, score 3.9e-29
862908002553	HMMPfam hit to PF00575, RNA binding S1, score 3.2e-23
862908002554	HMMPfam hit to PF00575, RNA binding S1, score 1.1e-21
862908002555	HMMPfam hit to PF00575, RNA binding S1, score 2.8e-27
862908002556	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]; Region: DegQ; COG0265
862908002557	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
862908002558	Signal peptide predicted for BMS0588 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.990 between residues 18 and 19
862908002559	HMMPfam hit to PF00089, Peptidase S1, chymotrypsin, score 0.00011
862908002560	PS00134 Serine proteases, trypsin family, histidine active site.
862908002561	PS00673 Serine proteases, V8 family, serine active site.
862908002562	Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2; Region: ALDH_F6_MMSDH; cd07085
862908002563	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
862908002564	tetrameric interface [polypeptide binding]; other site
862908002565	NAD binding site [chemical binding]; other site
862908002566	catalytic residues [active]
862908002567	HMMPfam hit to PF00171, Aldehyde dehydrogenase, score 1.1e-124
862908002568	hypothetical protein; Validated; Region: PRK07198
862908002569	GTP cyclohydrolase N terminal; Region: GTP_CH_N; pfam12471
862908002570	GTP cyclohydrolase II (RibA).  GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the...; Region: GTP_cyclohydro2; cd00641
862908002571	dimerization interface [polypeptide binding]; other site
862908002572	active site
862908002573	HMMPfam hit to PF00925, GTP cyclohydrolase II, score 7.1e-06
862908002574	Protein of unknown function (DUF1688); Region: DUF1688; pfam07958
862908002575	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
862908002576	active site
862908002577	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908002578	HMMPfam hit to PF00156, Phosphoribosyltransferase, score 3.7e-06
862908002579	Uridine kinase [Nucleotide transport and metabolism]; Region: Udk; COG0572
862908002580	Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway; Region: UMPK; cd02023
862908002581	ATP-binding site [chemical binding]; other site
862908002582	Sugar specificity; other site
862908002583	Pyrimidine base specificity; other site
862908002584	HMMPfam hit to PF00485, Phosphoribulokinase/uridine kinase, score 1.7e-29
862908002585	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002586	PS00120 Lipases, serine active site.
862908002587	Signal peptide predicted for BMS0600 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.749 between residues 23 and 24
862908002588	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908002589	GTP-binding protein HflX; Region: GTP_HflX; TIGR03156
862908002590	GTP-binding GTPase N-terminal; Region: GTP-bdg_N; pfam13167
862908002591	HflX GTPase family; Region: HflX; cd01878
862908002592	G1 box; other site
862908002593	GTP/Mg2+ binding site [chemical binding]; other site
862908002594	Switch I region; other site
862908002595	G2 box; other site
862908002596	G3 box; other site
862908002597	Switch II region; other site
862908002598	G4 box; other site
862908002599	G5 box; other site
862908002600	HMMPfam hit to PF01926, GTP-binding protein, HSR1-related, score 9e-31
862908002601	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002602	pantoate--beta-alanine ligase; Region: panC; TIGR00018
862908002603	Pantoate-beta-alanine ligase; Region: PanC; cd00560
862908002604	active site
862908002605	ATP-binding site [chemical binding]; other site
862908002606	pantoate-binding site; other site
862908002607	HXXH motif; other site
862908002608	HMMPfam hit to PF02569, Pantoate-beta-alanine ligase, score 6.1e-105
862908002609	Flavoprotein; Region: Flavoprotein; pfam02441
862908002610	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated; Region: PRK05579
862908002611	DNA / pantothenate metabolism flavoprotein; Region: DFP; pfam04127
862908002612	HMMPfam hit to PF04127, DNA/pantothenate metabolism flavoprotein, C-terminal, score 1.2e-09
862908002613	HMMPfam hit to PF02441, Flavoprotein, score 4.1e-29
862908002614	5 probable transmembrane helices predicted for BMS0605 by TMHMM2.0 at aa 10-29, 109-131, 135-157, 201-223 and 255-277
862908002615	hypothetical protein; Provisional; Region: PRK08317
862908002616	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908002617	S-adenosylmethionine binding site [chemical binding]; other site
862908002618	Type III pantothenate kinase; Region: Pan_kinase; cl17198
862908002619	Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a...; Region: KPHMT-like; cd06557
862908002620	oligomerization interface [polypeptide binding]; other site
862908002621	active site
862908002622	metal binding site [ion binding]; metal-binding site
862908002623	HMMPfam hit to PF02548, Ketopantoate hydroxymethyltransferase, score 2.4e-110
862908002624	Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvN; pfam07991
862908002625	ketol-acid reductoisomerase; Provisional; Region: PRK05479
862908002626	Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvC; pfam01450
862908002627	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]; Region: IlvE; COG0115
862908002628	PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and...; Region: PLPDE_IV; cd00449
862908002629	homodimer interface [polypeptide binding]; other site
862908002630	substrate-cofactor binding pocket; other site
862908002631	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908002632	catalytic residue [active]
862908002633	HMMPfam hit to PF01063, Aminotransferase, class IV, score 3.5e-08
862908002634	PS00770 Aminotransferases class-IV signature.
862908002635	Domain of unknown function (DUF329); Region: DUF329; pfam03884
862908002636	HMMPfam hit to PF03884, Protein of unknown function DUF329, score 1.8e-14
862908002637	Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]; Region: SuhB; COG0483
862908002638	IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be...; Region: IMPase; cd01639
862908002639	active site
862908002640	dimerization interface [polypeptide binding]; other site
862908002641	HMMPfam hit to PF00459, Inositol monophosphatase, score 1.2e-49
862908002642	PS00629 Inositol monophosphatase family signature 1.
862908002643	CASP C terminal; Region: CASP_C; pfam08172
862908002644	1 probable transmembrane helix predicted for BMS0613 by TMHMM2.0 at aa 21-40
862908002645	HEAT repeats; Region: HEAT_2; pfam13646
862908002646	Signal peptide predicted for BMS0614 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.663 between residues 18 and 19
862908002647	Signal peptide predicted for BMS0615 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.509 between residues 37 and 38
862908002648	KpsF/GutQ family protein; Region: kpsF; TIGR00393
862908002649	KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose...; Region: SIS_Kpsf; cd05014
862908002650	putative active site [active]
862908002651	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein.  These APIs catalyze the conversion of the pentose pathway...; Region: CBS_pair_KpsF_GutQ_assoc; cd04604
862908002652	HMMPfam hit to PF01380, Sugar isomerase (SIS), score 9.7e-21
862908002653	HMMPfam hit to PF00571, CBS, score 4.4e-07
862908002654	HMMPfam hit to PF00571, CBS, score 9e-05
862908002655	apolipoprotein N-acyltransferase; Reviewed; Region: lnt; PRK00302
862908002656	Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; cl10482
862908002657	Apolipoprotein N-acyl transferase (class 9 nitrilases); Region: ALP_N-acyl_transferase; cd07571
862908002658	putative active site [active]
862908002659	catalytic triad [active]
862908002660	putative dimer interface [polypeptide binding]; other site
862908002661	8 probable transmembrane helices predicted for BMS0617 by TMHMM2.0 at aa 5-27, 31-53, 66-83, 98-120, 133-155, 175-197, 204-226 and 514-533
862908002662	HMMPfam hit to PF00795, Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, score 6.7e-06
862908002663	1 probable transmembrane helix predicted for BMS0618 by TMHMM2.0 at aa 190-212
862908002664	Peptidase S8 family domain in Subtilisin-like proteins; Region: Peptidases_S8_Subtilisin_like; cd07473
862908002665	catalytic triad [active]
862908002666	putative active site [active]
862908002667	HMMPfam hit to PF00082, Peptidase S8 and S53, subtilisin, kexin, sedolisin, score 2.7e-44
862908002668	PS00136 Serine proteases, subtilase family, aspartic acid active site.
862908002669	Signal peptide predicted for BMS0619 by SignalP 2.0 HMM (Signal peptide probability 0.981) with cleavage site probability 0.927 between residues 49 and 50
862908002670	1 probable transmembrane helix predicted for BMS0620 by TMHMM2.0 at aa 15-32
862908002671	Predicted membrane protein, hemolysin III homolog [General function prediction only]; Region: COG1272
862908002672	channel protein, hemolysin III family; Region: hlyIII; TIGR01065
862908002673	6 probable transmembrane helices predicted for BMS0621 by TMHMM2.0 at aa 15-37, 42-64, 95-117, 129-148, 158-175 and 182-200
862908002674	HMMPfam hit to PF03006, Hly-III related proteins, score 1.2e-55
862908002675	DnaK suppressor protein [Signal transduction mechanisms]; Region: DksA; COG1734
862908002676	HMMPfam hit to PF01258, Zn-finger, prokaryotic DksA/TraR C4 type, score 7.1e-09
862908002677	HMMPfam hit to PF01613, Flavin reductase-like, score 1.6e-29
862908002678	YceG-like family; Region: YceG; pfam02618
862908002679	proteins similar to Escherichia coli yceG; Region: yceG_like; cd08010
862908002680	dimerization interface [polypeptide binding]; other site
862908002681	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002682	HMMPfam hit to PF02618, Protein of unknown function DUF175, score 1.8e-118
862908002683	1 probable transmembrane helix predicted for BMS0624 by TMHMM2.0 at aa 20-42
862908002684	Signal peptide predicted for BMS0624 by SignalP 2.0 HMM (Signal peptide probability 0.818) with cleavage site probability 0.763 between residues 33 and 34
862908002685	Uncharacterized protein family (UPF0081); Region: UPF0081; pfam03652
862908002686	HMMPfam hit to PF03652, Conserved hypothetical protein 250, score 4.6e-21
862908002687	transcription termination factor Rho; Provisional; Region: rho; PRK09376
862908002688	Rho termination factor, N-terminal domain; Region: Rho_N; smart00959
862908002689	Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA...; Region: Rho_CSD; cd04459
862908002690	RNA binding site [nucleotide binding]; other site
862908002691	Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the...; Region: rho_factor; cd01128
862908002692	multimer interface [polypeptide binding]; other site
862908002693	Walker A motif; other site
862908002694	ATP binding site [chemical binding]; other site
862908002695	Walker B motif; other site
862908002696	HMMPfam hit to PF07498, Rho termination factor, N-terminal, score 2.3e-09
862908002697	HMMPfam hit to PF07497, Rho termination factor, RNA-binding, score 8.1e-57
862908002698	HMMPfam hit to PF00006, H+-transporting two-sector ATPase, alpha/beta subunit, central region, score 1.4e-63
862908002699	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002700	peptide chain release factor 1; Validated; Region: prfA; PRK00591
862908002701	This domain is found in peptide chain release factors; Region: PCRF; smart00937
862908002702	RF-1 domain; Region: RF-1; pfam00472
862908002703	HMMPfam hit to PF03462, PCRF, score 6e-55
862908002704	HMMPfam hit to PF00472, Class I peptide chain release factor, score 5.7e-66
862908002705	PS00745 Prokaryotic-type class I peptide chain release factors signature.
862908002706	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
862908002707	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional; Region: PRK09328
862908002708	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908002709	S-adenosylmethionine binding site [chemical binding]; other site
862908002710	PS00092 N-6 Adenine-specific DNA methylases signature.
862908002711	UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Region: murA; TIGR01072
862908002712	UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555
862908002713	hinge; other site
862908002714	active site
862908002715	HMMPfam hit to PF00275, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase), score 6.2e-140
862908002716	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002717	Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a...; Region: PKCI_related; cd01276
862908002718	nucleotide binding site/active site [active]
862908002719	HIT family signature motif; other site
862908002720	catalytic residue [active]
862908002721	HMMPfam hit to PF01230, Histidine triad (HIT) protein, score 8.8e-30
862908002722	PS00892 HIT family signature.
862908002723	Signal peptide predicted for BMS0631 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.707 between residues 19 and 20
862908002724	Signal peptide predicted for BMS0633 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.991 between residues 18 and 19
862908002725	PS00888 Cyclic nucleotide-binding domain signature 1.
862908002726	Signal peptide predicted for BMS0634 by SignalP 2.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.440 between residues 22 and 23
862908002727	2 probable transmembrane helices predicted for BMS0635 by TMHMM2.0 at aa 7-24 and 87-104
862908002728	Acyl-protein synthetase, LuxE; Region: LuxE; pfam04443
862908002729	HMMPfam hit to PF04443, Acyl-protein synthetase, LuxE, score 2.8e-39
862908002730	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
862908002731	Acyl-CoA reductase (LuxC); Region: LuxC; pfam05893
862908002732	NAD(P) binding site [chemical binding]; other site
862908002733	catalytic residues [active]
862908002734	Coenzyme F390 synthetase [Coenzyme metabolism]; Region: PaaK; COG1541
862908002735	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
862908002736	acyl-activating enzyme (AAE) consensus motif; other site
862908002737	active site
862908002738	AMP binding site [chemical binding]; other site
862908002739	CoA binding site [chemical binding]; other site
862908002740	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
862908002741	Coenzyme F390 synthetase [Coenzyme metabolism]; Region: PaaK; COG1541
862908002742	acyl-activating enzyme (AAE) consensus motif; other site
862908002743	AMP binding site [chemical binding]; other site
862908002744	active site
862908002745	CoA binding site [chemical binding]; other site
862908002746	PS00455 Putative AMP-binding domain signature.
862908002747	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
862908002748	Zn2+ binding site [ion binding]; other site
862908002749	Mg2+ binding site [ion binding]; other site
862908002750	Predicted glutamine amidotransferase [General function prediction only]; Region: COG0121
862908002751	Glutamine amidotransferases class-II (Gn-AT)_YafJ-type.  YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea.  YafJ has a conserved structural fold similar to those of other class II...; Region: YafJ; cd01908
862908002752	putative active site [active]
862908002753	putative dimer interface [polypeptide binding]; other site
862908002754	HMMPfam hit to PF00310, Glutamine amidotransferase, class-II, score 1.2e-14
862908002755	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
862908002756	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
862908002757	HMMPfam hit to PF00440, Bacterial regulatory protein, TetR, score 2.8e-18
862908002758	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
862908002759	Protein export membrane protein; Region: SecD_SecF; cl14618
862908002760	12 probable transmembrane helices predicted for BMS0643 by TMHMM2.0 at aa 7-29, 335-354, 361-383, 388-410, 431-453, 463-485, 526-545, 863-882, 889-911, 921-943, 970-992 and 1012-1034
862908002761	HMMPfam hit to PF00873, Acriflavin resistance protein, score 3e-107
862908002762	Signal peptide predicted for BMS0643 by SignalP 2.0 HMM (Signal peptide probability 0.968) with cleavage site probability 0.365 between residues 34 and 35
862908002763	Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: TolC; COG1538
862908002764	Signal peptide predicted for BMS0644 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.958 between residues 27 and 28
862908002765	ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488
862908002766	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
862908002767	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
862908002768	HMMPfam hit to PF00005, ABC transporter, score 7.4e-36
862908002769	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002770	HMMPfam hit to PF00005, ABC transporter, score 2.3e-23
862908002771	PS00211 ABC transporters family signature.
862908002772	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002773	Flagellin N-methylase; Region: FliB; pfam03692
862908002774	HMMPfam hit to PF03692, Protein of unknown function UPF0153, score 2.1e-08
862908002775	Methyltransferase domain; Region: Methyltransf_23; pfam13489
862908002776	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
862908002777	PS00190 Cytochrome c family heme-binding site signature.
862908002778	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
862908002779	ArsC family; Region: ArsC; pfam03960
862908002780	HMMPfam hit to PF03960, Arsenate reductase and related, score 1.4e-29
862908002781	DTW domain; Region: DTW; cl01221
862908002782	HMMPfam hit to PF03942, DTW, score 1.7e-35
862908002783	FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277
862908002784	FAD binding domain; Region: FAD_binding_4; pfam01565
862908002785	HMMPfam hit to PF02913, FAD linked oxidase, C-terminal, score 4.2e-07
862908002786	GTPase RsgA; Reviewed; Region: PRK00098
862908002787	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
862908002788	RNA binding site [nucleotide binding]; other site
862908002789	Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases; Region: YjeQ_EngC; cd01854
862908002790	GTPase/Zn-binding domain interface [polypeptide binding]; other site
862908002791	GTP/Mg2+ binding site [chemical binding]; other site
862908002792	G4 box; other site
862908002793	G5 box; other site
862908002794	G1 box; other site
862908002795	Switch I region; other site
862908002796	G2 box; other site
862908002797	G3 box; other site
862908002798	Switch II region; other site
862908002799	HMMPfam hit to PF03193, Protein of unknown function DUF258, score 2.6e-63
862908002800	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002801	PilZ domain; Region: PilZ; pfam07238
862908002802	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908002803	Signal peptide predicted for BMS0655 by SignalP 2.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.332 between residues 17 and 18
862908002804	cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the...; Region: cyclophilin; cd00317
862908002805	active site
862908002806	HMMPfam hit to PF00160, Peptidyl-prolyl cis-trans isomerase, cyclophilin type, score 1.3e-62
862908002807	PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
862908002808	single-stranded-DNA-specific exonuclease RecJ; Region: recJ; TIGR00644
862908002809	DHH family; Region: DHH; pfam01368
862908002810	DHHA1 domain; Region: DHHA1; pfam02272
862908002811	HMMPfam hit to PF02272, Phosphoesterase, DHHA1, score 2e-12
862908002812	HMMPfam hit to PF01368, Phosphoesterase, RecJ-like, score 6e-40
862908002813	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
862908002814	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
862908002815	Signal peptide predicted for BMS0659 by SignalP 2.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.494 between residues 20 and 21
862908002816	Signal peptide predicted for BMS0660 by SignalP 2.0 HMM (Signal peptide probability 0.966) with cleavage site probability 0.528 between residues 21 and 22
862908002817	Signal peptide predicted for BMS0662 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.925 between residues 17 and 18
862908002818	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908002819	active site
862908002820	phosphorylation site [posttranslational modification]
862908002821	intermolecular recognition site; other site
862908002822	HMMPfam hit to PF00072, Response regulator receiver, score 1.6e-06
862908002823	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908002824	S-adenosylmethionine binding site [chemical binding]; other site
862908002825	FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784
862908002826	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908002827	active site
862908002828	phosphorylation site [posttranslational modification]
862908002829	intermolecular recognition site; other site
862908002830	dimerization interface [polypeptide binding]; other site
862908002831	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908002832	binding surface
862908002833	TPR motif; other site
862908002834	HMMPfam hit to PF07719, , score 1; PF07719, Tetratricopeptide repeat
862908002835	HMMPfam hit to PF07719, , score 0.46; PF07719, Tetratricopeptide repeat
862908002836	Radical SAM superfamily; Region: Radical_SAM; pfam04055
862908002837	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908002838	FeS/SAM binding site; other site
862908002839	Lysine-2,3-aminomutase; Region: LAM_C; pfam12544
862908002840	HMMPfam hit to PF04055, Radical SAM, score 4.9e-10
862908002841	2 probable transmembrane helices predicted for BMS0669 by TMHMM2.0 at aa 9-31 and 44-66
862908002842	DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127
862908002843	active site
862908002844	catalytic site [active]
862908002845	substrate binding site [chemical binding]; other site
862908002846	HMMPfam hit to PF00929, Exonuclease, score 2.5e-34
862908002847	dihydrolipoamide dehydrogenase; Reviewed; Region: PRK06416
862908002848	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
862908002849	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
862908002850	HMMPfam hit to PF00070, FAD-dependent pyridine nucleotide-disulphide oxidoreductase, score 1.4e-76
862908002851	PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site.
862908002852	HMMPfam hit to PF02852, Pyridine nucleotide-disulphide oxidoreductase dimerisation region, score 1e-37
862908002853	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
862908002854	E3 interaction surface; other site
862908002855	lipoyl attachment site [posttranslational modification]; other site
862908002856	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
862908002857	branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed; Region: PRK11856
862908002858	E3 interaction surface; other site
862908002859	lipoyl attachment site [posttranslational modification]; other site
862908002860	e3 binding domain; Region: E3_binding; pfam02817
862908002861	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
862908002862	HMMPfam hit to PF00364, Biotin/lipoyl attachment, score 1.1e-28
862908002863	HMMPfam hit to PF00364, Biotin/lipoyl attachment, score 3.1e-24
862908002864	HMMPfam hit to PF02817, E3 binding, score 5e-08
862908002865	HMMPfam hit to PF00198, Catalytic domain of components of various dehydrogenase complexes, score 3.8e-98
862908002866	Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes...; Region: LbetaH; cl00160
862908002867	putative trimer interface [polypeptide binding]; other site
862908002868	putative CoA binding site [chemical binding]; other site
862908002869	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 7.5
862908002870	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 2.4
862908002871	Signal peptide predicted for BMS0674 by SignalP 2.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.757 between residues 22 and 23
862908002872	3D domain; Region: 3D; pfam06725
862908002873	HMMPfam hit to PF06725, 3D, score 5.5e-11
862908002874	Signal peptide predicted for BMS0676 by SignalP 2.0 HMM (Signal peptide probability 0.941) with cleavage site probability 0.930 between residues 25 and 26
862908002875	Signal peptide predicted for BMS0677 by SignalP 2.0 HMM (Signal peptide probability 0.842) with cleavage site probability 0.274 between residues 32 and 33
862908002876	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
862908002877	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
862908002878	Signal peptide predicted for BMS0679 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.728 between residues 30 and 31
862908002879	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908002880	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908002881	ATP binding site [chemical binding]; other site
862908002882	Mg2+ binding site [ion binding]; other site
862908002883	G-X-G motif; other site
862908002884	6 probable transmembrane helices predicted for BMS0680 by TMHMM2.0 at aa 21-43, 48-70, 83-100, 104-123, 130-147 and 162-180
862908002885	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 0.00014
862908002886	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 5.7e-10
862908002887	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]; Region: COG4567
862908002888	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908002889	active site
862908002890	phosphorylation site [posttranslational modification]
862908002891	intermolecular recognition site; other site
862908002892	dimerization interface [polypeptide binding]; other site
862908002893	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
862908002894	HMMPfam hit to PF00072, Response regulator receiver, score 7.7e-12
862908002895	HMMPfam hit to PF02954, Helix-turn-helix, Fis-type, score 3.5e-13
862908002896	Endonuclease I; Region: Endonuclease_1; pfam04231
862908002897	HMMPfam hit to PF04231, Endonuclease I, score 1.5e-15
862908002898	Signal peptide predicted for BMS0682 by SignalP 2.0 HMM (Signal peptide probability 0.948) with cleavage site probability 0.705 between residues 28 and 29
862908002899	Endonuclease I; Region: Endonuclease_1; pfam04231
862908002900	HMMPfam hit to PF04231, Endonuclease I, score 3.1e-22
862908002901	Signal peptide predicted for BMS0683 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.966 between residues 18 and 19
862908002902	Signal peptide predicted for BMS0684 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.801 between residues 23 and 24
862908002903	Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490
862908002904	putative catalytic site [active]
862908002905	putative metal binding site [ion binding]; other site
862908002906	putative phosphate binding site [ion binding]; other site
862908002907	Signal peptide predicted for BMS0685 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.904 between residues 23 and 24
862908002908	1 probable transmembrane helix predicted for BMS0685 by TMHMM2.0 at aa 9-31
862908002909	HMMPfam hit to PF03372, Endonuclease/exonuclease/phosphatase, score 3.9e-06
862908002910	1 probable transmembrane helix predicted for BMS0686 by TMHMM2.0 at aa 13-35
862908002911	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002912	oligoendopeptidase, pepF/M3 family; Region: M3_fam_3; TIGR02290
862908002913	Peptidase family M3B Oligopeptidase F (PepF); Region: M3B_PepF_2; cd09607
862908002914	active site
862908002915	Zn binding site [ion binding]; other site
862908002916	HMMPfam hit to PF01432, Peptidase M3A and M3B, thimet/oligopeptidase F, score 4.2e-10
862908002917	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908002918	Bacterial protein of unknown function (DUF871); Region: DUF871; pfam05913
862908002919	Signal peptide predicted for BMS0688 by SignalP 2.0 HMM (Signal peptide probability 0.960) with cleavage site probability 0.948 between residues 17 and 18
862908002920	recombination factor protein RarA; Reviewed; Region: PRK13342
862908002921	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908002922	Walker A motif; other site
862908002923	ATP binding site [chemical binding]; other site
862908002924	Walker B motif; other site
862908002925	DNA polymerase III, delta subunit; Region: DNA_pol3_delta; pfam06144
862908002926	arginine finger; other site
862908002927	MgsA AAA+ ATPase C terminal; Region: MgsA_C; pfam12002
862908002928	HMMPfam hit to PF00004, AAA ATPase, central region, score 1.5e-11
862908002929	PS00690 DEAH-box subfamily ATP-dependent helicases signature.
862908002930	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002931	30S ribosomal protein S21; Reviewed; Region: rpsU; PRK00270
862908002932	Signal peptide predicted for BMS0691 by SignalP 2.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.755 between residues 22 and 23
862908002933	isoleucyl-tRNA synthetase; Reviewed; Region: ileS; PRK06039
862908002934	catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818
862908002935	HIGH motif; other site
862908002936	catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818
862908002937	active site
862908002938	KMSKS motif; other site
862908002939	Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases; Region: Anticodon_Ia_Ile_ABEc; cd07961
862908002940	tRNA binding surface [nucleotide binding]; other site
862908002941	anticodon binding site; other site
862908002942	HMMPfam hit to PF00133, Aminoacyl-tRNA synthetase, class Ia, score 1.1e-253
862908002943	Signal peptide predicted for BMS0694 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.967 between residues 19 and 20
862908002944	PS00036 bZIP transcription factors basic domain signature.
862908002945	Maf-like protein; Region: Maf; pfam02545
862908002946	Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555
862908002947	active site
862908002948	dimer interface [polypeptide binding]; other site
862908002949	HMMPfam hit to PF02545, Maf-like protein, score 1.2e-48
862908002950	Uncharacterized ACR, YggU family COG1872; Region: DUF167; cl00811
862908002951	HMMPfam hit to PF02594, Protein of unknown function DUF167, score 2.2e-14
862908002952	Signal peptide predicted for BMS0697 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.912 between residues 19 and 20
862908002953	Signal peptide predicted for BMS0699 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.446 between residues 27 and 28
862908002954	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908002955	TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: DctP; COG1638
862908002956	Bacterial extracellular solute-binding protein, family 7; Region: SBP_bac_7; cl15441
862908002957	Signal peptide predicted for BMS0700 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.994 between residues 21 and 22
862908002958	1 probable transmembrane helix predicted for BMS0700 by TMHMM2.0 at aa 7-29
862908002959	HMMPfam hit to PF03480, TRAP dicarboxylate transporter- DctP subunit, score 5.6e-10
862908002960	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002961	Tripartite ATP-independent periplasmic transporters, DctQ component; Region: DctQ; pfam04290
862908002962	4 probable transmembrane helices predicted for BMS0701 by TMHMM2.0 at aa 17-39, 49-71, 96-118 and 133-155
862908002963	DctM-like transporters; Region: DctM; pfam06808
862908002964	TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]; Region: DctQ; cl17274
862908002965	Signal peptide predicted for BMS0702 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.391 between residues 43 and 44
862908002966	11 probable transmembrane helices predicted for BMS0702 by TMHMM2.0 at aa 9-31, 46-68, 77-99, 103-125, 137-159, 169-191, 212-234, 269-291, 311-345, 355-377 and 390-412
862908002967	HMMPfam hit to PF06808, TRAP C4-dicarboxylate transport system permease DctM subunit, score 8.4e-10
862908002968	Signal peptide predicted for BMS0703 by SignalP 2.0 HMM (Signal peptide probability 0.984) with cleavage site probability 0.801 between residues 20 and 21
862908002969	Signal peptide predicted for BMS0704 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.622 between residues 27 and 28
862908002970	Exopolyphosphatase-related proteins [General function prediction only]; Region: COG0618
862908002971	DHH family; Region: DHH; pfam01368
862908002972	HMMPfam hit to PF01368, Phosphoesterase, RecJ-like, score 2.3e-22
862908002973	ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131
862908002974	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
862908002975	Walker A/P-loop; other site
862908002976	ATP binding site [chemical binding]; other site
862908002977	Q-loop/lid; other site
862908002978	ABC transporter signature motif; other site
862908002979	Walker B; other site
862908002980	D-loop; other site
862908002981	H-loop/switch region; other site
862908002982	HMMPfam hit to PF00005, ABC transporter, score 3.3e-44
862908002983	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002984	gliding motility-associated ABC transporter permease protein GldF; Region: ABC_perm_GldF; TIGR03518
862908002985	ABC-2 family transporter protein; Region: ABC2_membrane_3; pfam12698
862908002986	6 probable transmembrane helices predicted for BMS0709 by TMHMM2.0 at aa 13-35, 55-77, 98-120, 135-157, 164-183 and 211-233
862908002987	ABC-type uncharacterized transport system; Region: ABC_transp_aux; pfam09822
862908002988	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
862908002989	4 probable transmembrane helices predicted for BMS0710 by TMHMM2.0 at aa 5-27, 32-54, 67-89 and 476-498
862908002990	1 probable transmembrane helix predicted for BMS0711 by TMHMM2.0 at aa 5-22
862908002991	4 probable transmembrane helices predicted for BMS0712 by TMHMM2.0 at aa 56-78, 109-131, 161-183 and 196-218
862908002992	thymidine kinase; Provisional; Region: PRK04296
862908002993	AAA domain; Region: AAA_14; pfam13173
862908002994	HMMPfam hit to PF00265, Thymidine kinase, score 1.1e-65
862908002995	PS00017 ATP/GTP-binding site motif A (P-loop).
862908002996	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
862908002997	active site
862908002998	HMMPfam hit to PF00156, Phosphoribosyltransferase, score 6.6e-28
862908002999	PS00103 Purine/pyrimidine phosphoribosyl transferases signature.
862908003000	Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]; Region: COG2605
862908003001	HMMPfam hit to PF00288, GHMP kinase, score 7.2e-14
862908003002	4 probable transmembrane helices predicted for BMS0717 by TMHMM2.0 at aa 12-34, 74-93, 106-123 and 127-149
862908003003	K+-dependent Na+/Ca+ exchanger related-protein; Region: TIGR00367
862908003004	Sodium/calcium exchanger protein; Region: Na_Ca_ex; pfam01699
862908003005	Sodium/calcium exchanger protein; Region: Na_Ca_ex; pfam01699
862908003006	Signal peptide predicted for BMS0718 by SignalP 2.0 HMM (Signal peptide probability 0.774) with cleavage site probability 0.678 between residues 22 and 23
862908003007	10 probable transmembrane helices predicted for BMS0718 by TMHMM2.0 at aa 5-22, 29-51, 71-93, 105-122, 126-145, 166-188, 203-225, 234-256, 266-285 and 292-309
862908003008	HMMPfam hit to PF01699, Sodium/calcium exchanger membrane region, score 2.2e-29
862908003009	HMMPfam hit to PF01699, Sodium/calcium exchanger membrane region, score 1.9e-24
862908003010	B12 binding domain; Region: B12-binding; pfam02310
862908003011	B12 binding site [chemical binding]; other site
862908003012	Elongator protein 3, MiaB family, Radical SAM; Region: Elp3; smart00729
862908003013	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908003014	FeS/SAM binding site; other site
862908003015	HMMPfam hit to PF04055, Radical SAM, score 4.4e-20
862908003016	Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per...; Region: GSH_Peroxidase; cd00340
862908003017	catalytic residues [active]
862908003018	dimer interface [polypeptide binding]; other site
862908003019	HMMPfam hit to PF00255, Glutathione peroxidase, score 5.2e-62
862908003020	PS00763 Glutathione peroxidases signature 2.
862908003021	Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing stalled ribosome from damaged messenger RNAs; Region: SmpB; cd09294
862908003022	SmpB-tmRNA interface; other site
862908003023	HMMPfam hit to PF01668, SmpB protein, score 2.7e-32
862908003024	PS01317 Protein smpB signature.
862908003025	Signal peptide predicted for BMS0722 by SignalP 2.0 HMM (Signal peptide probability 0.855) with cleavage site probability 0.849 between residues 44 and 45
862908003026	16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed; Region: ksgA; PRK00274
862908003027	Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]; Region: KsgA; COG0030
862908003028	HMMPfam hit to PF00398, Ribosomal RNA adenine methylase transferase, score 2e-34
862908003029	UGMP family protein; Validated; Region: PRK09604
862908003030	Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: COG1214; cl17884
862908003031	HMMPfam hit to PF00814, Peptidase M22, glycoprotease, score 8.9e-19
862908003032	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
862908003033	Alpha/beta hydrolase family; Region: Abhydrolase_5; pfam12695
862908003034	Signal peptide predicted for BMS0725 by SignalP 2.0 HMM (Signal peptide probability 0.975) with cleavage site probability 0.827 between residues 29 and 30
862908003035	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908003036	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
862908003037	active site
862908003038	metal binding site [ion binding]; metal-binding site
862908003039	Cytochrome c554 and c-prime; Region: Cytochrome_C554; pfam13435
862908003040	PS00190 Cytochrome c family heme-binding site signature.
862908003041	PS00190 Cytochrome c family heme-binding site signature.
862908003042	PS00190 Cytochrome c family heme-binding site signature.
862908003043	PS00190 Cytochrome c family heme-binding site signature.
862908003044	Signal peptide predicted for BMS0726 by SignalP 2.0 HMM (Signal peptide probability 0.920) with cleavage site probability 0.761 between residues 24 and 25
862908003045	tol-pal system protein YbgF; Region: tol_pal_ybgF; TIGR02795
862908003046	Tetratricopeptide repeat; Region: TPR_6; pfam13174
862908003047	HMMPfam hit to PF07719, , score 0.031; PF07719, Tetratricopeptide repeat
862908003048	HMMPfam hit to PF07719, , score 0.53; PF07719, Tetratricopeptide repeat
862908003049	Signal peptide predicted for BMS0727 by SignalP 2.0 HMM (Signal peptide probability 0.976) with cleavage site probability 0.489 between residues 21 and 22
862908003050	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908003051	1 probable transmembrane helix predicted for BMS0728 by TMHMM2.0 at aa 5-22
862908003052	Signal peptide predicted for BMS0728 by SignalP 2.0 HMM (Signal peptide probability 0.856) with cleavage site probability 0.424 between residues 20 and 21
862908003053	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
862908003054	Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]; Region: OmpA; COG2885
862908003055	ligand binding site [chemical binding]; other site
862908003056	HMMPfam hit to PF00691, OmpA/MotB, score 1.7e-32
862908003057	Signal peptide predicted for BMS0729 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.335 between residues 24 and 25
862908003058	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908003059	Peptidase MA superfamily; Region: Peptidase_MA_2; pfam13485
862908003060	Signal peptide predicted for BMS0730 by SignalP 2.0 HMM (Signal peptide probability 0.983) with cleavage site probability 0.872 between residues 24 and 25
862908003061	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908003062	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908003063	Response regulator receiver domain; Region: Response_reg; pfam00072
862908003064	active site
862908003065	phosphorylation site [posttranslational modification]
862908003066	intermolecular recognition site; other site
862908003067	dimerization interface [polypeptide binding]; other site
862908003068	HMMPfam hit to PF00072, Response regulator receiver, score 1.3e-23
862908003069	Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I).  TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a...; Region: TA_like; cd06502
862908003070	Beta-eliminating lyase; Region: Beta_elim_lyase; pfam01212
862908003071	tetramer interface [polypeptide binding]; other site
862908003072	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908003073	catalytic residue [active]
862908003074	HMMPfam hit to PF01212, Tryptophanase, score 1.4e-120
862908003075	Signal peptide predicted for BMS0733 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.960 between residues 18 and 19
862908003076	Domain of unknown function (DUF4423); Region: DUF4423; pfam14394
862908003077	Signal peptide predicted for BMS0735 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.815 between residues 19 and 20
862908003078	Signal peptide predicted for BMS0736 by SignalP 2.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.958 between residues 24 and 25
862908003079	Signal peptide predicted for BMS0737 by SignalP 2.0 HMM (Signal peptide probability 0.910) with cleavage site probability 0.410 between residues 26 and 27
862908003080	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
862908003081	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
862908003082	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal, score 5e-10
862908003083	Multidrug and toxic compound extrusion family and similar proteins; Region: MATE_like; cl09326
862908003084	Na+-driven multidrug efflux pump [Defense mechanisms]; Region: NorM; COG0534
862908003085	12 probable transmembrane helices predicted for BMS0739 by TMHMM2.0 at aa 35-57, 72-94, 115-137, 152-174, 187-209, 214-233, 260-282, 297-319, 340-362, 372-389, 409-431 and 435-457
862908003086	HMMPfam hit to PF01554, Multi antimicrobial extrusion protein MatE, score 1.1e-33
862908003087	HMMPfam hit to PF01554, Multi antimicrobial extrusion protein MatE, score 6.9e-33
862908003088	Trypsin; Region: Trypsin; pfam00089
862908003089	cleavage site
862908003090	active site
862908003091	substrate binding sites [chemical binding]; other site
862908003092	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
862908003093	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
862908003094	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
862908003095	Signal peptide predicted for BMS0740 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.903 between residues 22 and 23
862908003096	HMMPfam hit to PF00089, Peptidase S1, chymotrypsin, score 7.2e-22
862908003097	PS00134 Serine proteases, trypsin family, histidine active site.
862908003098	PS00135 Serine proteases, trypsin family, serine active site.
862908003099	HMMPfam hit to PF00023, Ankyrin, score 0.0089
862908003100	Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from...; Region: siderophore_interacting; cd06193
862908003101	FAD binding pocket [chemical binding]; other site
862908003102	FAD binding motif [chemical binding]; other site
862908003103	phosphate binding motif [ion binding]; other site
862908003104	NAD binding pocket [chemical binding]; other site
862908003105	HMMPfam hit to PF04954, Siderophore-interacting protein, score 9e-07
862908003106	Signal peptide predicted for BMS0742 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.965 between residues 25 and 26
862908003107	Signal peptide predicted for BMS0743 by SignalP 2.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.873 between residues 19 and 20
862908003108	PS00687 Aldehyde dehydrogenases glutamic acid active site.
862908003109	Signal peptide predicted for BMS0744 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.984 between residues 24 and 25
862908003110	Protein of unknown function (DUF1304); Region: DUF1304; pfam06993
862908003111	3 probable transmembrane helices predicted for BMS0745 by TMHMM2.0 at aa 7-26, 73-95 and 102-119
862908003112	HMMPfam hit to PF06993, Protein of unknown function DUF1304, score 1.2e-50
862908003113	Signal peptide predicted for BMS0746 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 between residues 18 and 19
862908003114	3 probable transmembrane helices predicted for BMS0747 by TMHMM2.0 at aa 5-24, 28-45 and 58-91
862908003115	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
862908003116	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
862908003117	non-specific DNA binding site [nucleotide binding]; other site
862908003118	salt bridge; other site
862908003119	sequence-specific DNA binding site [nucleotide binding]; other site
862908003120	HMMPfam hit to PF01381, Helix-turn-helix motif, score 2.9e-14
862908003121	tyrosine recombinase XerD; Region: recomb_XerD; TIGR02225
862908003122	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
862908003123	active site
862908003124	Int/Topo IB signature motif; other site
862908003125	DNA binding site [nucleotide binding]
862908003126	HMMPfam hit to PF00589, Phage integrase, score 4e-19
862908003128	HMMPfam hit to PF00589, Phage integrase, score 0.021
862908003129	Helix-turn-helix domain; Region: HTH_17; pfam12728
862908003130	This hit extended beyond the end of the feature by 1 aa and was clipped.; PS00092 N-6 Adenine-specific DNA methylases signature.
862908003131	1 probable transmembrane helix predicted for BMS0753 by TMHMM2.0 at aa 20-42
862908003132	Helix-turn-helix domain; Region: HTH_36; pfam13730
862908003133	Protein of unknown function (DUF3892); Region: DUF3892; pfam13031
862908003134	Signal peptide predicted for BMS0757 by SignalP 2.0 HMM (Signal peptide probability 0.759) with cleavage site probability 0.276 between residues 20 and 21
862908003135	3 probable transmembrane helices predicted for BMS0758 by TMHMM2.0 at aa 20-42, 57-79 and 91-113
862908003136	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
862908003137	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
862908003138	non-specific DNA binding site [nucleotide binding]; other site
862908003139	salt bridge; other site
862908003140	sequence-specific DNA binding site [nucleotide binding]; other site
862908003141	Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]; Region: PinR; COG1961
862908003142	Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining...; Region: Ser_Recombinase; cd00338
862908003143	catalytic residues [active]
862908003144	catalytic nucleophile [active]
862908003145	HMMPfam hit to PF00239, Resolvase, N-terminal, score 2.9e-25
862908003146	Ribbon-helix-helix protein, copG family; Region: RHH_1; pfam01402
862908003147	HMMPfam hit to PF01402, Helix-turn-helix protein, CopG, score 6.3e-05
862908003148	PD-(D/E)XK nuclease superfamily; Region: PDDEXK_4; pfam14281
862908003149	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
862908003150	HNH endonuclease; Region: HNH_5; pfam14279
862908003151	Nucleoside 2-deoxyribosyltransferase; Region: Nuc_deoxyrib_tr; cl17818
862908003152	integrase; Provisional; Region: int; PHA02601
862908003153	Phage integrase family; Region: Phage_integrase; pfam00589
862908003154	active site
862908003155	DNA binding site [nucleotide binding]
862908003156	Int/Topo IB signature motif; other site
862908003157	HMMPfam hit to PF00589, Phage integrase, score 2.5e-32
862908003158	Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]; Region: Sms; COG1066
862908003159	PS00017 ATP/GTP-binding site motif A (P-loop).
862908003160	Helix-turn-helix domain; Region: HTH_36; pfam13730
862908003161	Helix-turn-helix domain; Region: HTH_17; pfam12728
862908003162	Reverse transcriptase (RNA-dependent DNA polymerase); Region: RVT_1; pfam00078
862908003163	RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA...; Region: RT_Bac_retron_II; cd03487
862908003164	putative active site [active]
862908003165	putative NTP binding site [chemical binding]; other site
862908003166	putative nucleic acid binding site [nucleotide binding]; other site
862908003167	HMMPfam hit to PF00078, RNA-directed DNA polymerase (Reverse transcriptase), score 1.8e-16
862908003168	Protein of unknown function (DUF2813); Region: DUF2813; pfam11398
862908003169	TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family.  The bacteriophage P2 OLD protein, which has DNase as well as...; Region: TOPRIM_OLD; cd01026
862908003170	putative active site [active]
862908003171	putative metal-binding site [ion binding]; other site
862908003172	PS00017 ATP/GTP-binding site motif A (P-loop).
862908003173	1 probable transmembrane helix predicted for BMS0783 by TMHMM2.0 at aa 4-26
862908003174	3 probable transmembrane helices predicted for BMS0788 by TMHMM2.0 at aa 46-65, 87-109 and 116-138
862908003175	DNA binding domain, excisionase family; Region: excise; TIGR01764
862908003176	HMMPfam hit to PF00376, Bacterial regulatory protein, MerR, score 0.00027
862908003177	Type I restriction-modification system methyltransferase subunit [Defense mechanisms]; Region: HsdM; COG0286
862908003178	HsdM N-terminal domain; Region: HsdM_N; pfam12161
862908003179	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908003180	S-adenosylmethionine binding site [chemical binding]; other site
862908003181	Eco57I restriction-modification methylase; Region: Eco57I; pfam07669
862908003182	HMMPfam hit to PF02506, Type I restriction-modification system, M subunit, score 8.5e-66
862908003183	PS00092 N-6 Adenine-specific DNA methylases signature.
862908003184	HMMPfam hit to PF02384, N-6 DNA methylase, score 1.5e-68
862908003185	Restriction endonuclease S subunits [Defense mechanisms]; Region: HsdS; COG0732
862908003186	Type I restriction modification DNA specificity domain; Region: Methylase_S; pfam01420
862908003187	Type I restriction modification DNA specificity domain; Region: Methylase_S; pfam01420
862908003188	HMMPfam hit to PF01420, Restriction modification system DNA specificity domain, score 9.3e-31
862908003189	HMMPfam hit to PF01420, Restriction modification system DNA specificity domain, score 5.5e-13
862908003190	Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]; Region: COG0610
862908003191	Type I restriction enzyme R protein N terminus (HSDR_N); Region: HSDR_N; pfam04313
862908003192	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
862908003193	ATP binding site [chemical binding]; other site
862908003194	putative Mg++ binding site [ion binding]; other site
862908003195	HMMPfam hit to PF04313, Protein of unknown function DUF450, score 1.8e-26
862908003196	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 4.5e-19
862908003197	Protein of unknown function DUF45; Region: DUF45; pfam01863
862908003198	HMMPfam hit to PF01863, Protein of unknown function DUF45, score 3e-25
862908003199	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908003200	3 probable transmembrane helices predicted for BMS0794 by TMHMM2.0 at aa 17-36, 46-68 and 131-153
862908003201	Divergent AAA domain; Region: AAA_4; pfam04326
862908003202	HMMPfam hit to PF04326, Protein of unknown function DUF467, score 4e-08
862908003203	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl17200
862908003204	Divergent AAA domain; Region: AAA_4; pfam04326
862908003205	HMMPfam hit to PF04326, Protein of unknown function DUF467, score 2.5e-11
862908003206	Protein of unknown function (DUF2743); Region: DUF2743; pfam10899
862908003207	Lanthionine synthetase C-like protein; Region: LANC_like; pfam05147
862908003208	LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain...; Region: LanC_like; cl04955
862908003209	active site
862908003210	zinc binding site [ion binding]; other site
862908003211	HMMPfam hit to PF05147, Lanthionine synthetase C-like, score 2.8e-11
862908003212	Domain of unknown function (DUF4095); Region: DUF4095; pfam13338
862908003213	Cupin domain; Region: Cupin_2; pfam07883
862908003214	Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]; Region: COG1917
862908003215	HMMPfam hit to PF00190, Cupin, score 0.0037
862908003216	Transcriptional regulator [Transcription]; Region: LysR; COG0583
862908003217	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908003218	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
862908003219	dimerization interface [polypeptide binding]; other site
862908003220	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 6.9e-11
862908003221	HMMPfam hit to PF03466, LysR, substrate-binding, score 1.2e-09
862908003222	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl17182
862908003223	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
862908003224	HMMPfam hit to PF00583, GCN5-related N-acetyltransferase, score 8.4e-06
862908003225	Signal peptide predicted for BMS0811 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.986 between residues 18 and 19
862908003226	Signal peptide predicted for BMS0813 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.998 between residues 19 and 20
862908003227	Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]; Region: COG2220
862908003228	Beta-lactamase superfamily domain; Region: Lactamase_B_2; pfam12706
862908003229	1 probable transmembrane helix predicted for BMS0816 by TMHMM2.0 at aa 5-27
862908003230	Signal peptide predicted for BMS0816 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.672 between residues 24 and 25
862908003231	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908003232	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
862908003233	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
862908003234	AefR-like transcriptional repressor, C-terminal region; Region: TetR_C_7; pfam14246
862908003235	HMMPfam hit to PF00440, Bacterial regulatory protein, TetR, score 1.6e-18
862908003236	PS01081 Bacterial regulatory proteins, tetR family signature.
862908003237	Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]; Region: EmrE; COG2076
862908003238	4 probable transmembrane helices predicted for BMS0818 by TMHMM2.0 at aa 5-27, 42-61, 66-88 and 93-115
862908003239	HMMPfam hit to PF00893, Small multidrug resistance protein, score 4.1e-45
862908003240	Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+.  Their ligand binding site is formed in the interface between...; Region: TroA-like; cl00262
862908003241	Periplasmic binding protein; Region: Peripla_BP_2; pfam01497
862908003242	intersubunit interface [polypeptide binding]; other site
862908003243	Signal peptide predicted for BMS0819 by SignalP 2.0 HMM (Signal peptide probability 0.794) with cleavage site probability 0.661 between residues 31 and 32
862908003244	HMMPfam hit to PF01497, Periplasmic binding protein, score 8.8e-22
862908003245	ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism]; Region: FepG; COG4779
862908003246	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
862908003247	ABC-ATPase subunit  interface; other site
862908003248	dimer interface [polypeptide binding]; other site
862908003249	putative PBP binding regions; other site
862908003250	9 probable transmembrane helices predicted for BMS0820 by TMHMM2.0 at aa 23-45, 71-93, 100-122, 132-153, 166-188, 208-230, 259-281, 291-313 and 320-342
862908003251	HMMPfam hit to PF01032, Bacterial transport system permease protein, score 4.3e-79
862908003252	hemin importer ATP-binding subunit; Provisional; Region: hmuV; PRK13548
862908003253	ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
862908003254	Walker A/P-loop; other site
862908003255	ATP binding site [chemical binding]; other site
862908003256	Q-loop/lid; other site
862908003257	ABC transporter signature motif; other site
862908003258	Walker B; other site
862908003259	D-loop; other site
862908003260	H-loop/switch region; other site
862908003261	HMMPfam hit to PF00005, ABC transporter, score 2.1e-40
862908003262	PS00017 ATP/GTP-binding site motif A (P-loop).
862908003263	PS00211 ABC transporters family signature.
862908003264	Putative heme iron utilization protein [Inorganic ion transport and metabolism]; Region: HugZ; COG0748
862908003265	Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381
862908003266	Protein of unknown function (DUF2470); Region: DUF2470; pfam10615
862908003267	HMMPfam hit to PF01243, Pyridoxamine 5'-phosphate oxidase-related, score 0.0007
862908003268	fumarate hydratase; Reviewed; Region: fumC; PRK00485
862908003269	Class II fumarases; Region: Fumarase_classII; cd01362
862908003270	active site
862908003271	tetramer interface [polypeptide binding]; other site
862908003272	HMMPfam hit to PF00206, Fumarate lyase, score 2.2e-158
862908003273	PS00163 Fumarate lyases signature.
862908003274	Signal peptide predicted for BMS0825 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.871 between residues 20 and 21
862908003275	Signal peptide predicted for BMS0826 by SignalP 2.0 HMM (Signal peptide probability 0.934) with cleavage site probability 0.435 between residues 25 and 26
862908003276	Signal peptide predicted for BMS0827 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.985 between residues 26 and 27
862908003277	Signal peptide predicted for BMS0828 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.833 between residues 18 and 19
862908003278	Signal peptide predicted for BMS0829 by SignalP 2.0 HMM (Signal peptide probability 0.976) with cleavage site probability 0.592 between residues 22 and 23
862908003279	Signal peptide predicted for BMS0832 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 18 and 19
862908003280	Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]; Region: AcuC; COG0123
862908003281	Histone deacetylase class IIa; Region: HDAC_classII_APAH; cd10001
862908003282	active site
862908003283	Zn binding site [ion binding]; other site
862908003284	HMMPfam hit to PF00850, Histone deacetylase superfamily, score 3.8e-65
862908003285	Endonuclease I; Region: Endonuclease_1; pfam04231
862908003286	Signal peptide predicted for BMS0834 by SignalP 2.0 HMM (Signal peptide probability 0.889) with cleavage site probability 0.547 between residues 20 and 21
862908003287	HMMPfam hit to PF04231, Endonuclease I, score 1.6e-21
862908003288	PS00697 ATP-dependent DNA ligase AMP-binding site.
862908003289	Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]; Region: CorA; COG0598
862908003290	Thermotoga maritima CorA_like subfamily; Region: TmCorA-like_1; cd12828
862908003291	oligomer interface [polypeptide binding]; other site
862908003292	metal binding site [ion binding]; metal-binding site
862908003293	metal binding site [ion binding]; metal-binding site
862908003294	Cl binding site [ion binding]; other site
862908003295	aspartate ring; other site
862908003296	basic sphincter; other site
862908003297	putative hydrophobic gate; other site
862908003298	periplasmic entrance; other site
862908003299	HMMPfam hit to PF01544, Mg2+ transporter protein, CorA-like, score 2.8e-60
862908003300	2 probable transmembrane helices predicted for BMS0835 by TMHMM2.0 at aa 298-320 and 330-349
862908003301	Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]; Region: CstA; COG1966
862908003302	Carbon starvation protein CstA; Region: CstA; pfam02554
862908003303	C-terminal domain on CstA (DUF4161); Region: DUF4161; pfam13722
862908003304	12 probable transmembrane helices predicted for BMS0836 by TMHMM2.0 at aa 2-19, 64-86, 128-150, 165-183, 190-212, 239-261, 282-304, 328-350, 378-400, 404-423, 430-452 and 462-479
862908003305	HMMPfam hit to PF02554, Carbon starvation protein CstA, score 5.8e-29
862908003306	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
862908003307	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
862908003308	catalytic residue [active]
862908003309	putative S-transferase; Provisional; Region: PRK11752
862908003310	GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources...; Region: GST_N_Ure2p_like; cd03048
862908003311	C-terminal domain interface [polypeptide binding]; other site
862908003312	GSH binding site (G-site) [chemical binding]; other site
862908003313	dimer interface [polypeptide binding]; other site
862908003314	C-terminal, alpha helical domain of Escherichia coli Yghu Glutathione S-transferases and related uncharacterized proteins; Region: GST_C_YghU_like; cd10292
862908003315	dimer interface [polypeptide binding]; other site
862908003316	N-terminal domain interface [polypeptide binding]; other site
862908003317	active site
862908003318	HMMPfam hit to PF00043, Glutathione S-transferase, C-terminal, score 9.4e-05
862908003319	Small Multidrug Resistance protein; Region: Multi_Drug_Res; cl00910
862908003320	4 probable transmembrane helices predicted for BMS0839 by TMHMM2.0 at aa 5-24, 34-51, 63-82 and 86-108
862908003321	HMMPfam hit to PF00893, Small multidrug resistance protein, score 6.3e-31
862908003322	chromosome replication initiation inhibitor protein; Validated; Region: PRK03635
862908003323	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908003324	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
862908003325	dimerization interface [polypeptide binding]; other site
862908003326	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 5.9e-11
862908003327	PS00044 Bacterial regulatory proteins, lysR family signature.
862908003328	LysE type translocator; Region: LysE; cl00565
862908003329	5 probable transmembrane helices predicted for BMS0841 by TMHMM2.0 at aa 4-26, 38-60, 64-86, 110-132 and 147-169
862908003330	HMMPfam hit to PF01810, Lysine exporter protein (LYSE/YGGA), score 3.8e-31
862908003331	Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]; Region: CypX; COG2124
862908003332	Cytochrome P450; Region: p450; cl12078
862908003333	HMMPfam hit to PF00067, Cytochrome P450, score 4.5e-38
862908003334	PS00086 Cytochrome P450 cysteine heme-iron ligand signature.
862908003335	ZIP Zinc transporter; Region: Zip; pfam02535
862908003336	Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]; Region: COG0428
862908003337	HMMPfam hit to PF02535, Zinc transporter ZIP, score 1.1e-24
862908003338	8 probable transmembrane helices predicted for BMS0843 by TMHMM2.0 at aa 4-26, 39-58, 73-95, 115-137, 147-169, 176-198, 208-230 and 237-255
862908003339	2 probable transmembrane helices predicted for BMS0845 by TMHMM2.0 at aa 4-21 and 77-99
862908003340	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
862908003341	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
862908003342	putative acyl-acceptor binding pocket; other site
862908003343	HMMPfam hit to PF01553, Phospholipid/glycerol acyltransferase, score 2.4e-18
862908003344	1 probable transmembrane helix predicted for BMS0846 by TMHMM2.0 at aa 7-29
862908003345	Acetyltransferase (GNAT) domain; Region: Acetyltransf_5; cl17496
862908003346	Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]; Region: ArgE; COG0624
862908003347	Zinc peptidases M18, M20, M28, and M42; Region: Zinc_peptidase_like; cl14876
862908003348	metal binding site [ion binding]; metal-binding site
862908003349	HMMPfam hit to PF01546, Peptidase M20, score 4e-17
862908003350	HMMPfam hit to PF07687, , score 2.5e-10
862908003351	PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2.
862908003352	D-alanyl-D-alanine carboxypeptidase; Region: VanY; pfam02557
862908003353	Signal peptide predicted for BMS0851 by SignalP 2.0 HMM (Signal peptide probability 0.974) with cleavage site probability 0.612 between residues 31 and 32
862908003354	Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]; Region: PhnA; COG2824
862908003355	PhnA Zinc-Ribbon; Region: PhnA_Zn_Ribbon; pfam08274
862908003356	PhnA protein; Region: PhnA; pfam03831
862908003357	HMMPfam hit to PF03831, PhnA protein, score 4.8e-26
862908003358	Uncharacterized conserved protein [Function unknown]; Region: COG4095
862908003359	3 probable transmembrane helices predicted for BMS0854 by TMHMM2.0 at aa 4-26, 38-60 and 65-84
862908003360	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
862908003361	spermidine synthase; Provisional; Region: PRK00811
862908003362	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908003363	S-adenosylmethionine binding site [chemical binding]; other site
862908003364	HMMPfam hit to PF01564, Spermine synthase, score 4.2e-82
862908003365	Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per...; Region: GSH_Peroxidase; cd00340
862908003366	catalytic residues [active]
862908003367	dimer interface [polypeptide binding]; other site
862908003368	HMMPfam hit to PF00255, Glutathione peroxidase, score 3e-23
862908003369	Signal peptide predicted for BMS0857 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.780 between residues 18 and 19
862908003370	FOG: GAF domain [Signal transduction mechanisms]; Region: FhlA; COG2203
862908003371	GAF domain; Region: GAF; pfam01590
862908003372	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908003373	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908003374	dimer interface [polypeptide binding]; other site
862908003375	phosphorylation site [posttranslational modification]
862908003376	Histidine kinase-like ATPases; Region: HATPase_c; smart00387
862908003377	HMMPfam hit to PF01590, GAF, score 2.9e-08
862908003378	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 2.9e-06
862908003379	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 0.026
862908003380	1 probable transmembrane helix predicted for BMS0859 by TMHMM2.0 at aa 5-27
862908003381	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
862908003382	motif II; other site
862908003383	HMMPfam hit to PF00702, Haloacid dehalogenase-like hydrolase, score 3.1e-22
862908003384	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
862908003385	2 probable transmembrane helices predicted for BMS0862 by TMHMM2.0 at aa 13-32 and 42-64
862908003386	Predicted Fe-S-cluster redox enzyme [General function prediction only]; Region: COG0820
862908003387	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908003388	FeS/SAM binding site; other site
862908003389	HMMPfam hit to PF04055, Radical SAM, score 1.8e-08
862908003390	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
862908003391	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
862908003392	HMMPfam hit to PF00440, Bacterial regulatory protein, TetR, score 1e-07
862908003393	Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]; Region: CcdA; COG0785
862908003394	Cytochrome C biogenesis protein transmembrane region; Region: DsbD; cl15788
862908003395	4 probable transmembrane helices predicted for BMS0866 by TMHMM2.0 at aa 17-39, 75-97, 104-126 and 146-163
862908003396	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
862908003397	catalytic residues [active]
862908003398	Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these...; Region: PRX_like2; cd02970
862908003399	putative catalytic residues [active]
862908003400	Signal peptide predicted for BMS0867 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.865 between residues 20 and 21
862908003401	PS00194 Thioredoxin family active site.
862908003402	Protein of unknown function (DUF968); Region: DUF968; pfam06147
862908003403	START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; Region: SRPBCC; cd07812
862908003404	hydrophobic ligand binding site; other site
862908003405	Signal peptide predicted for BMS0869 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.997 between residues 18 and 19
862908003406	4 probable transmembrane helices predicted for BMS0870 by TMHMM2.0 at aa 13-35, 48-70, 109-128 and 138-160
862908003407	Protein of unknown function (DUF1456); Region: DUF1456; pfam07308
862908003408	HMMPfam hit to PF07308, Protein of unknown function DUF1456, score 1.2e-35
862908003409	Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues; Region: GH25_muramidase; cd00599
862908003410	Glycosyl hydrolases family 25; Region: Glyco_hydro_25; pfam01183
862908003411	active site
862908003412	Signal peptide predicted for BMS0873 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.794 between residues 23 and 24
862908003413	HMMPfam hit to PF01183, Glycoside hydrolase, family 25, score 3e-07
862908003414	Prolyl 4-hydroxylase alpha subunit homologues; Region: P4Hc; smart00702
862908003415	HMMPfam hit to PF03171, 2OG-Fe(II) oxygenase superfamily, score 3.8e-05
862908003416	Fibrillar collagen C-terminal domain; Region: COLFI; cl02436
862908003417	Phosphoenolpyruvate:glucose-phosphotransferase regulator; Region: MtfA; cl01267
862908003418	1 probable transmembrane helix predicted for BMS0878 by TMHMM2.0 at aa 4-26
862908003419	Ankyrin repeats (many copies); Region: Ank_4; pfam13637
862908003420	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
862908003421	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
862908003422	HMMPfam hit to PF00023, Ankyrin, score 4.5e-06
862908003423	HMMPfam hit to PF00023, Ankyrin, score 0.076
862908003424	HMMPfam hit to PF00023, Ankyrin, score 1.7e-07
862908003425	Signal peptide predicted for BMS0879 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.957 between residues 20 and 21
862908003426	Catalase [Inorganic ion transport and metabolism]; Region: KatE; COG0753
862908003427	Clade 1 of the heme-binding enzyme catalase; Region: catalase_clade_1; cd08154
862908003428	tetramer interface [polypeptide binding]; other site
862908003429	heme binding pocket [chemical binding]; other site
862908003430	HMMPfam hit to PF00199, Catalase, score 4.2e-215
862908003431	PS00437 Catalase proximal heme-ligand signature.
862908003432	PS00438 Catalase proximal active site signature.
862908003433	Signal peptide predicted for BMS0880 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 between residues 26 and 27
862908003434	Sulfite exporter TauE/SafE; Region: TauE; pfam01925
862908003435	8 probable transmembrane helices predicted for BMS0881 by TMHMM2.0 at aa 7-29, 44-66, 79-98, 103-125, 138-160, 175-197, 209-231 and 246-261
862908003436	HMMPfam hit to PF01925, Protein of unknown function DUF81, score 1.5e-35
862908003437	FtsJ-like methyltransferase; Region: FtsJ; pfam01728
862908003438	2 probable transmembrane helices predicted for BMS0883 by TMHMM2.0 at aa 12-34 and 44-63
862908003439	Di-haem cytochrome c peroxidase; Region: CCP_MauG; pfam03150
862908003440	Signal peptide predicted for BMS0884 by SignalP 2.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.946 between residues 18 and 19
862908003441	HMMPfam hit to PF03150, Di-haem cytochrome c peroxidase, score 3.6e-11
862908003442	PS00190 Cytochrome c family heme-binding site signature.
862908003443	PS00017 ATP/GTP-binding site motif A (P-loop).
862908003444	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
862908003445	PS00120 Lipases, serine active site.
862908003446	Signal peptide predicted for BMS0885 by SignalP 2.0 HMM (Signal peptide probability 0.759) with cleavage site probability 0.206 between residues 31 and 32
862908003447	3 probable transmembrane helices predicted for BMS0886 by TMHMM2.0 at aa 5-24, 39-61 and 211-230
862908003448	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908003449	FeS/SAM binding site; other site
862908003450	Domain of unknown function (DUF4008); Region: DUF4008; pfam13186
862908003451	HMMPfam hit to PF04055, Radical SAM, score 7.4e-12
862908003452	PS01305 moaA / nifB / pqqE family signature.
862908003453	Predicted transporter component [General function prediction only]; Region: COG2391
862908003454	Sulphur transport; Region: Sulf_transp; pfam04143
862908003455	4 probable transmembrane helices predicted for BMS0889 by TMHMM2.0 at aa 13-35, 55-77, 84-102 and 117-136
862908003456	HMMPfam hit to PF04143, YeeE/YedE, score 7.5e-15
862908003457	Predicted transporter component [General function prediction only]; Region: COG2391
862908003458	Sulphur transport; Region: Sulf_transp; pfam04143
862908003459	Signal peptide predicted for BMS0890 by SignalP 2.0 HMM (Signal peptide probability 0.864) with cleavage site probability 0.395 between residues 21 and 22
862908003460	4 probable transmembrane helices predicted for BMS0890 by TMHMM2.0 at aa 5-23, 38-60, 83-105 and 110-129
862908003461	HMMPfam hit to PF04143, YeeE/YedE, score 6e-11
862908003462	dehydrogenase, PQQ-dependent, s-GDH family; Region: non_repeat_PQQ; TIGR03606
862908003463	Glucose / Sorbosone dehydrogenase; Region: GSDH; pfam07995
862908003464	Signal peptide predicted for BMS0891 by SignalP 2.0 HMM (Signal peptide probability 0.821) with cleavage site probability 0.731 between residues 20 and 21
862908003465	Protein of unknown function (DUF3750); Region: DUF3750; pfam12570
862908003466	Signal peptide predicted for BMS0892 by SignalP 2.0 HMM (Signal peptide probability 0.984) with cleavage site probability 0.870 between residues 18 and 19
862908003467	Transcriptional regulator [Transcription]; Region: LysR; COG0583
862908003468	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908003469	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
862908003470	putative effector binding pocket; other site
862908003471	dimerization interface [polypeptide binding]; other site
862908003472	HMMPfam hit to PF03466, LysR, substrate-binding, score 2.5e-33
862908003473	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 2.8e-17
862908003474	YceI-like domain; Region: YceI; pfam04264
862908003475	Signal peptide predicted for BMS0894 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.921 between residues 18 and 19
862908003476	Pirin-related protein [General function prediction only]; Region: COG1741
862908003477	Pirin; Region: Pirin; pfam02678
862908003478	Pirin C-terminal cupin domain; Region: Pirin_C; pfam05726
862908003479	HMMPfam hit to PF02678, Pirin, N-terminal, score 1.9e-40
862908003480	HMMPfam hit to PF05726, Pirin, C-terminal, score 1.3e-27
862908003481	ATP-dependent DNA helicase RecQ; Region: recQ; TIGR01389
862908003482	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
862908003483	ATP binding site [chemical binding]; other site
862908003484	putative Mg++ binding site [ion binding]; other site
862908003485	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
862908003486	nucleotide binding region [chemical binding]; other site
862908003487	ATP-binding site [chemical binding]; other site
862908003488	This DNA-binding domain is found in the RecQ helicase among others and has a helix-turn-helix structure; Region: RQC; smart00956
862908003489	HRDC domain; Region: HRDC; pfam00570
862908003490	HMMPfam hit to PF00270, DEAD/DEAH box helicase, N-terminal, score 6.2e-29
862908003491	HMMPfam hit to PF00271, Helicase, C-terminal, score 2.2e-28
862908003492	HMMPfam hit to PF00570, HRDC, score 1.2e-15
862908003493	MASE1; Region: MASE1; pfam05231
862908003494	CHASE domain; Region: CHASE; pfam03924
862908003495	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908003496	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908003497	dimer interface [polypeptide binding]; other site
862908003498	phosphorylation site [posttranslational modification]
862908003499	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908003500	ATP binding site [chemical binding]; other site
862908003501	Mg2+ binding site [ion binding]; other site
862908003502	G-X-G motif; other site
862908003503	Response regulator receiver domain; Region: Response_reg; pfam00072
862908003504	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908003505	active site
862908003506	phosphorylation site [posttranslational modification]
862908003507	intermolecular recognition site; other site
862908003508	dimerization interface [polypeptide binding]; other site
862908003509	HMMPfam hit to PF00072, Response regulator receiver, score 5.7e-27
862908003510	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 2.5e-39
862908003511	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 1.4e-21
862908003512	7 probable transmembrane helices predicted for BMS0897 by TMHMM2.0 at aa 7-29, 49-71, 83-105, 125-147, 154-176, 191-210 and 496-518
862908003513	HMMPfam hit to PF03924, CHASE, score 2.6e-06
862908003514	HMMPfam hit to PF05231, MASE1, score 8.4e-18
862908003515	Signal peptide predicted for BMS0897 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.728 between residues 35 and 36
862908003516	Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]; Region: COG2996
862908003517	S1 domain; Region: S1_2; pfam13509
862908003518	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
862908003519	Signal peptide predicted for BMS0899 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.762 between residues 16 and 17
862908003520	Bacterial SH3 domain; Region: SH3_3; cl17532
862908003521	Signal peptide predicted for BMS0900 by SignalP 2.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.714 between residues 23 and 24
862908003522	Coenzyme PQQ synthesis protein D (PqqD); Region: PqqD; cl05126
862908003523	putative beta-lysine N-acetyltransferase; Region: GNAT_ablB; TIGR03827
862908003524	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
862908003525	Coenzyme A binding pocket [chemical binding]; other site
862908003526	HMMPfam hit to PF00583, GCN5-related N-acetyltransferase, score 1.4e-05
862908003527	Na(+)/proline cotransporter PutP and related proteins; solute binding domain; Region: SLC5sbd_PutP; cd11475
862908003528	Predicted symporter [General function prediction only]; Region: DhlC; COG4147
862908003529	Na binding site [ion binding]; other site
862908003530	Signal peptide predicted for BMS0905 by SignalP 2.0 HMM (Signal peptide probability 0.871) with cleavage site probability 0.322 between residues 23 and 24
862908003531	13 probable transmembrane helices predicted for BMS0905 by TMHMM2.0 at aa 5-22, 42-64, 68-90, 120-138, 158-180, 187-209, 235-257, 277-299, 309-331, 360-382, 392-411, 418-437 and 442-461
862908003532	HMMPfam hit to PF00474, Na+/solute symporter, score 9.5e-44
862908003533	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscS; COG0668
862908003534	Mechanosensitive ion channel; Region: MS_channel; pfam00924
862908003535	3 probable transmembrane helices predicted for BMS0906 by TMHMM2.0 at aa 5-27, 76-98 and 103-125
862908003536	HMMPfam hit to PF00924, MscS Mechanosensitive ion channel, score 1.1e-19
862908003537	Transcriptional regulator [Transcription]; Region: LysR; COG0583
862908003538	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908003539	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
862908003540	dimerization interface [polypeptide binding]; other site
862908003541	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 5.1e-15
862908003542	PS00044 Bacterial regulatory proteins, lysR family signature.
862908003543	Coenzyme PQQ synthesis protein D (PqqD); Region: PqqD; cl05126
862908003544	Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; cl10482
862908003545	9 probable transmembrane helices predicted for BMS0910 by TMHMM2.0 at aa 15-32, 45-64, 68-90, 134-156, 171-193, 214-233, 248-270, 283-302 and 312-334
862908003546	Putative integral membrane protein (DUF2391); Region: DUF2391; cl01935
862908003547	4 probable transmembrane helices predicted for BMS0911 by TMHMM2.0 at aa 47-69, 79-98, 110-132 and 142-161
862908003548	7 probable transmembrane helices predicted for BMS0912 by TMHMM2.0 at aa 4-26, 35-57, 61-83, 95-117, 137-156, 177-199 and 214-236
862908003549	PS00017 ATP/GTP-binding site motif A (P-loop).
862908003550	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908003551	cobalt transport protein ATP-binding subunit; Region: cbiO; TIGR01166
862908003552	Walker A/P-loop; other site
862908003553	ATP binding site [chemical binding]; other site
862908003554	Q-loop/lid; other site
862908003555	ABC transporter signature motif; other site
862908003556	Walker B; other site
862908003557	D-loop; other site
862908003558	H-loop/switch region; other site
862908003559	HMMPfam hit to PF00005, ABC transporter, score 4.2e-18
862908003560	PS00017 ATP/GTP-binding site motif A (P-loop).
862908003561	Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+.  Their ligand binding site is formed in the interface between...; Region: TroA-like; cl00262
862908003562	Periplasmic solute binding protein family; Region: SBP_bac_9; pfam01297
862908003563	intersubunit interface [polypeptide binding]; other site
862908003564	HMMPfam hit to PF01297, Periplasmic solute binding protein, score 1.8e-28
862908003565	Signal peptide predicted for BMS0914 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.982 between residues 19 and 20
862908003566	Signal peptide predicted for BMS0915 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 between residues 17 and 18
862908003567	Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an...; Region: beta_CA_cladeA; cd00883
862908003568	active site clefts [active]
862908003569	zinc binding site [ion binding]; other site
862908003570	dimer interface [polypeptide binding]; other site
862908003571	HMMPfam hit to PF00484, Carbonic anhydrase, prokaryotic and plant, score 3.7e-45
862908003572	PS00704 Prokaryotic-type carbonic anhydrases signature 1.
862908003573	Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG0412
862908003574	HMMPfam hit to PF01738, Dienelactone hydrolase, score 5.3e-27
862908003575	Signal peptide predicted for BMS0917 by SignalP 2.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.974 between residues 18 and 19
862908003576	putative monovalent cation/H+ antiporter subunit D; Reviewed; Region: PRK08375
862908003577	4 probable transmembrane helices predicted for BMS0918 by TMHMM2.0 at aa 49-71, 94-116, 129-148 and 154-176
862908003578	RNA polymerase sigma factor, sigma-70 family; Region: sigma70-ECF; TIGR02937
862908003579	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
862908003580	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
862908003581	DNA binding residues [nucleotide binding]
862908003582	HMMPfam hit to PF04542, Sigma-70 region 2, score 7.1e-11
862908003583	Signal peptide predicted for BMS0920 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.996 between residues 28 and 29
862908003584	Monomeric isocitrate dehydrogenase [Energy production and conversion]; Region: Icd; COG2838
862908003585	Monomeric isocitrate dehydrogenase; Region: IDH; cl15383
862908003586	HMMPfam hit to PF03971, Isocitrate dehydrogenase NADP-dependent, monomeric type, score 0
862908003587	Predicted carboxypeptidase [Amino acid transport and metabolism]; Region: COG2866
862908003588	Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases; uncharacterized bacterial subgroup; Region: M14_Nna1_like_1; cd06234
862908003589	putative active site [active]
862908003590	Zn binding site [ion binding]; other site
862908003591	HMMPfam hit to PF00246, Peptidase M14, carboxypeptidase A, score 3.3e-41
862908003592	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
862908003593	1 probable transmembrane helix predicted for BMS0925 by TMHMM2.0 at aa 7-26
862908003594	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
862908003595	HMMPfam hit to PF00873, Acriflavin resistance protein, score 6.6e-42
862908003596	12 probable transmembrane helices predicted for BMS0926 by TMHMM2.0 at aa 7-29, 335-357, 359-381, 385-407, 428-450, 460-482, 525-543, 850-869, 871-893, 903-925, 946-968 and 983-1005
862908003597	PS00017 ATP/GTP-binding site motif A (P-loop).
862908003598	8 probable transmembrane helices predicted for BMS0927 by TMHMM2.0 at aa 15-32, 39-61, 71-93, 114-136, 151-168, 180-202, 217-239 and 244-266
862908003599	retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs; Region: retinol-DH_like_SDR_c_like; cd05327
862908003600	short chain dehydrogenase; Provisional; Region: PRK06197
862908003601	putative NAD(P) binding site [chemical binding]; other site
862908003602	active site
862908003603	HMMPfam hit to PF00106, Short-chain dehydrogenase/reductase SDR, score 2e-24
862908003604	Yqey-like protein; Region: YqeY; cl17540
862908003605	Orthopoxvirus protein of unknown function (DUF830); Region: DUF830; cl13998
862908003606	HMMPfam hit to PF06520, Protein of unknown function DUF1105, score 0.00043
862908003607	Signal peptide predicted for BMS0931 by SignalP 2.0 HMM (Signal peptide probability 0.905) with cleavage site probability 0.797 between residues 18 and 19
862908003608	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
862908003609	HMMPfam hit to PF00588, tRNA/rRNA methyltransferase (SpoU), score 7.6e-16
862908003610	1 probable transmembrane helix predicted for BMS0933 by TMHMM2.0 at aa 13-30
862908003611	methionyl-tRNA synthetase; Reviewed; Region: PRK12268
862908003612	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
862908003613	active site
862908003614	nucleotide binding site [chemical binding]; other site
862908003615	HIGH motif; other site
862908003616	KMSKS motif; other site
862908003617	Anticodon-binding domain of methionyl tRNA synthetases; Region: Anticodon_Ia_Met; cd07957
862908003618	tRNA binding surface [nucleotide binding]; other site
862908003619	anticodon binding site; other site
862908003620	HMMPfam hit to PF00133, Aminoacyl-tRNA synthetase, class Ia, score 5.5e-09
862908003621	PS00190 Cytochrome c family heme-binding site signature.
862908003622	Leucyl aminopeptidase [Amino acid transport and metabolism]; Region: PepB; COG0260
862908003623	Cytosol aminopeptidase family, N-terminal and catalytic domains.  Family M17 contains zinc- and manganese-dependent exopeptidases ( EC  3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and...; Region: Peptidase_M17; cd00433
862908003624	interface (dimer of trimers) [polypeptide binding]; other site
862908003625	Substrate-binding/catalytic site; other site
862908003626	Zn-binding sites [ion binding]; other site
862908003627	HMMPfam hit to PF00883, Peptidase M17, cytosol aminopeptidase, C-terminal, score 5.4e-125
862908003628	PS00631 Cytosol aminopeptidase signature.
862908003629	hypothetical protein; Validated; Region: PRK00029
862908003630	Uncharacterized conserved protein [Function unknown]; Region: COG0397
862908003631	HMMPfam hit to PF02696, Protein of unknown function UPF0061, score 1.1e-102
862908003632	Signal peptide predicted for BMS0938 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.613 between residues 21 and 22
862908003633	Protein of unknown function, DUF393; Region: DUF393; cl01136
862908003634	1 probable transmembrane helix predicted for BMS0939 by TMHMM2.0 at aa 84-106
862908003635	SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional; Region: PRK15001
862908003636	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908003637	S-adenosylmethionine binding site [chemical binding]; other site
862908003638	HMMPfam hit to PF05175, Methyltransferase small, score 6.7e-06
862908003639	PS00092 N-6 Adenine-specific DNA methylases signature.
862908003640	ribosome biogenesis GTP-binding protein YlqF; Region: GTPase_YlqF; TIGR03596
862908003641	Circularly permuted YlqF GTPase; Region: YlqF; cd01856
862908003642	GTP/Mg2+ binding site [chemical binding]; other site
862908003643	G4 box; other site
862908003644	G5 box; other site
862908003645	Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Region: Ras_like_GTPase; cd00882
862908003646	G1 box; other site
862908003647	G1 box; other site
862908003648	GTP/Mg2+ binding site [chemical binding]; other site
862908003649	Switch I region; other site
862908003650	G2 box; other site
862908003651	G2 box; other site
862908003652	G3 box; other site
862908003653	G3 box; other site
862908003654	Switch II region; other site
862908003655	Switch II region; other site
862908003656	HMMPfam hit to PF01926, GTP-binding protein, HSR1-related, score 7e-16
862908003657	PS00017 ATP/GTP-binding site motif A (P-loop).
862908003658	DEDDy 3'-5' exonuclease domain of WRN and similar proteins; Region: WRN_exo; cd06141
862908003659	catalytic site [active]
862908003660	putative active site [active]
862908003661	putative substrate binding site [chemical binding]; other site
862908003662	HMMPfam hit to PF01612, 3'-5' exonuclease, score 7.6e-13
862908003663	Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I:  Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from...; Region: Peptidase_C15; cd00501
862908003664	putative substrate binding pocket [chemical binding]; other site
862908003665	AC domain interface; other site
862908003666	catalytic triad [active]
862908003667	AB domain interface; other site
862908003668	HMMPfam hit to PF01470, Peptidase C15, pyroglutamyl peptidase I, score 1.1e-16
862908003669	PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site.
862908003670	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
862908003671	DNA-binding site [nucleotide binding]; DNA binding site
862908003672	RNA-binding motif; other site
862908003673	HMMPfam hit to PF00313, Cold-shock protein, DNA-binding, score 4.5e-28
862908003674	PS00352 'Cold-shock' DNA-binding domain signature.
862908003675	DEAD-like helicases superfamily; Region: DEXDc; smart00487
862908003676	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
862908003677	ATP binding site [chemical binding]; other site
862908003678	Mg++ binding site [ion binding]; other site
862908003679	motif III; other site
862908003680	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
862908003681	nucleotide binding region [chemical binding]; other site
862908003682	ATP-binding site [chemical binding]; other site
862908003683	HMMPfam hit to PF00270, DEAD/DEAH box helicase, N-terminal, score 4.3e-66
862908003684	PS00017 ATP/GTP-binding site motif A (P-loop).
862908003685	PS00039 DEAD-box subfamily ATP-dependent helicases signature.
862908003686	HMMPfam hit to PF00271, Helicase, C-terminal, score 2.5e-33
862908003687	3 probable transmembrane helices predicted for BMS0948 by TMHMM2.0 at aa 54-76, 81-103 and 118-135
862908003688	sphingolipid delta-4 desaturase; Region: PLN02579
862908003689	The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the...; Region: Membrane-FADS-like; cl00615
862908003690	putative di-iron ligands [ion binding]; other site
862908003691	HMMPfam hit to PF00487, Fatty acid desaturase, score 1.8e-32
862908003692	4 probable transmembrane helices predicted for BMS0949 by TMHMM2.0 at aa 39-58, 63-85, 97-119 and 188-210
862908003693	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
862908003694	metal-binding site [ion binding]
862908003695	HMMPfam hit to PF00403, Heavy metal transport/detoxification protein, score 0.0002
862908003696	PS01047 Heavy-metal-associated domain.
862908003697	Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217
862908003698	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
862908003699	metal-binding site [ion binding]
862908003700	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
862908003701	Soluble P-type ATPase [General function prediction only]; Region: COG4087
862908003702	HMMPfam hit to PF00403, Heavy metal transport/detoxification protein, score 4.5e-05
862908003703	PS01047 Heavy-metal-associated domain.
862908003704	8 probable transmembrane helices predicted for BMS0951 by TMHMM2.0 at aa 78-97, 107-124, 145-167, 177-194, 328-350, 363-385, 665-687 and 691-713
862908003705	HMMPfam hit to PF00122, E1-E2 ATPase-associated region, score 2.6e-78
862908003706	HMMPfam hit to PF00702, Haloacid dehalogenase-like hydrolase, score 1.7e-35
862908003707	PS00154 E1-E2 ATPases phosphorylation site.
862908003708	PS01229 Hypothetical cof family signature 2.
862908003709	Transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this domain superfamily was previously known as DUF156; Region: CsoR-like_DUF156; cd10148
862908003710	putative homodimer interface [polypeptide binding]; other site
862908003711	putative homotetramer interface [polypeptide binding]; other site
862908003712	putative allosteric switch controlling residues; other site
862908003713	putative metal binding site [ion binding]; other site
862908003714	putative homodimer-homodimer interface [polypeptide binding]; other site
862908003715	HMMPfam hit to PF02583, Protein of unknown function DUF156, score 1.6e-16
862908003716	MAPEG family; Region: MAPEG; cl09190
862908003717	HMMPfam hit to PF06561, Protein of unknown function DUF1123, score 9.3e-25
862908003718	3 probable transmembrane helices predicted for BMS0954 by TMHMM2.0 at aa 4-26, 72-94 and 114-136
862908003719	HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis...; Region: HIT_like; cl00228
862908003720	HMMPfam hit to PF01230, Histidine triad (HIT) protein, score 4.2e-13
862908003721	M14 family of metallocarboxypeptidases and related proteins; Region: Peptidase_M14_like; cl11393
862908003722	active site
862908003723	Zn binding site [ion binding]; other site
862908003724	HMMPfam hit to PF00246, Peptidase M14, carboxypeptidase A, score 5.2e-09
862908003725	Signal peptide predicted for BMS0956 by SignalP 2.0 HMM (Signal peptide probability 0.928) with cleavage site probability 0.784 between residues 19 and 20
862908003726	ABC transporter ATP-binding protein; Provisional; Region: PRK15064
862908003727	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
862908003728	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
862908003729	ABC transporter; Region: ABC_tran_2; pfam12848
862908003730	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
862908003731	HMMPfam hit to PF00005, ABC transporter, score 1.3e-16
862908003732	HMMPfam hit to PF00005, ABC transporter, score 4.7e-40
862908003733	PS00017 ATP/GTP-binding site motif A (P-loop).
862908003734	Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490
862908003735	putative catalytic site [active]
862908003736	putative metal binding site [ion binding]; other site
862908003737	putative phosphate binding site [ion binding]; other site
862908003738	HMMPfam hit to PF03372, Endonuclease/exonuclease/phosphatase, score 5.7e-46
862908003739	Virulence factor BrkB; Region: Virul_fac_BrkB; pfam03631
862908003740	Signal peptide predicted for BMS0959 by SignalP 2.0 HMM (Signal peptide probability 0.947) with cleavage site probability 0.483 between residues 62 and 63
862908003741	HMMPfam hit to PF03631, Ribonuclease BN, score 5.6e-07
862908003742	6 probable transmembrane helices predicted for BMS0959 by TMHMM2.0 at aa 44-66, 116-138, 158-180, 195-217, 230-252 and 267-289
862908003743	PS00017 ATP/GTP-binding site motif A (P-loop).
862908003744	Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_1; cd09111
862908003745	PLD-like domain; Region: PLDc_2; pfam13091
862908003746	putative active site [active]
862908003747	catalytic site [active]
862908003748	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
862908003749	PLD-like domain; Region: PLDc_2; pfam13091
862908003750	putative active site [active]
862908003751	catalytic site [active]
862908003752	HMMPfam hit to PF00614, Phospholipase D/Transphosphatidylase, score 1.1
862908003753	HMMPfam hit to PF00614, Phospholipase D/Transphosphatidylase, score 0.014
862908003754	Signal peptide predicted for BMS0960 by SignalP 2.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.661 between residues 19 and 20
862908003755	threonine dehydratase; Provisional; Region: PRK08198
862908003756	Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562
862908003757	tetramer interface [polypeptide binding]; other site
862908003758	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908003759	catalytic residue [active]
862908003760	C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains; Region: ACT_ThrD-II-like; cd04886
862908003761	HMMPfam hit to PF01842, Amino acid-binding ACT, score 2.5e-09
862908003762	HMMPfam hit to PF00291, Pyridoxal-5'-phosphate-dependent enzyme, beta subunit, score 5.2e-92
862908003763	PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site.
862908003764	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
862908003765	proline-specific peptidase, Bacillus coagulans-type subfamily; Region: pro_imino_pep_2; TIGR01250
862908003766	HMMPfam hit to PF00561, Alpha/beta hydrolase fold, score 3.3e-23
862908003767	Signal peptide predicted for BMS0964 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 27 and 28
862908003768	FxsA cytoplasmic membrane protein; Region: FxsA; pfam04186
862908003769	HMMPfam hit to PF04186, FxsA cytoplasmic membrane protein, score 6.7e-36
862908003770	3 probable transmembrane helices predicted for BMS0965 by TMHMM2.0 at aa 5-27, 32-54 and 75-97
862908003771	Homologs of eIF1/SUI1 including Escherichia coli YciH; Region: YciH_like; cd11567
862908003772	putative rRNA binding site [nucleotide binding]; other site
862908003773	HMMPfam hit to PF01253, Translation initiation factor SUI1, score 1.5e-11
862908003774	ATP-dependent RNA helicase RhlB; Provisional; Region: PRK04837
862908003775	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl17251
862908003776	ATP binding site [chemical binding]; other site
862908003777	putative Mg++ binding site [ion binding]; other site
862908003778	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
862908003779	nucleotide binding region [chemical binding]; other site
862908003780	ATP-binding site [chemical binding]; other site
862908003781	Predicted RNA-binding protein [General function prediction only]; Region: Jag; COG1847
862908003782	R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with SpoIIIJ. SpoIIIJ is necessary for the third stage of sporulation. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine...; Region: R3H_jag; cd02644
862908003783	RxxxH motif; other site
862908003784	HMMPfam hit to PF01424, Single-stranded nucleic acid binding R3H, score 5.7e-05
862908003785	HMMPfam hit to PF00271, Helicase, C-terminal, score 2.6e-35
862908003786	HMMPfam hit to PF00270, DEAD/DEAH box helicase, N-terminal, score 2.3e-50
862908003787	PS00039 DEAD-box subfamily ATP-dependent helicases signature.
862908003788	PS00017 ATP/GTP-binding site motif A (P-loop).
862908003789	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908003790	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cl00080
862908003791	dimer interface [polypeptide binding]; other site
862908003792	phosphorylation site [posttranslational modification]
862908003793	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908003794	ATP binding site [chemical binding]; other site
862908003795	Mg2+ binding site [ion binding]; other site
862908003796	G-X-G motif; other site
862908003797	5 probable transmembrane helices predicted for BMS0968 by TMHMM2.0 at aa 30-52, 64-86, 101-123, 135-157 and 167-186
862908003798	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 0.0039
862908003799	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 4.9e-22
862908003800	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
862908003801	HMMPfam hit to PF00639, PpiC-type peptidyl-prolyl cis-trans isomerase, score 9.6e-27
862908003802	PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature.
862908003803	DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]; Region: SSL2; COG1061
862908003804	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
862908003805	ATP binding site [chemical binding]; other site
862908003806	putative Mg++ binding site [ion binding]; other site
862908003807	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
862908003808	nucleotide binding region [chemical binding]; other site
862908003809	ATP-binding site [chemical binding]; other site
862908003810	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 2.4e-37
862908003811	HMMPfam hit to PF00270, DEAD/DEAH box helicase, N-terminal, score 4.1e-12
862908003812	HMMPfam hit to PF00271, Helicase, C-terminal, score 4.1e-11
862908003813	Signal peptide predicted for BMS0971 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.953 between residues 17 and 18
862908003814	3 probable transmembrane helices predicted for BMS0972 by TMHMM2.0 at aa 13-35, 45-59 and 102-119
862908003815	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
862908003816	Signal peptide predicted for BMS0974 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.883 between residues 17 and 18
862908003817	FecR protein; Region: FecR; pfam04773
862908003818	urocanate hydratase; Provisional; Region: PRK05414
862908003819	HMMPfam hit to PF01175, Urocanase, score 9.4e-115
862908003820	Thioredoxin; Region: Thioredoxin_4; pfam13462
862908003821	Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]; Region: DsbG; COG1651
862908003822	HMMPfam hit to PF01323, DSBA oxidoreductase, score 1.4e-05
862908003823	Disulfide bond formation protein DsbB; Region: DsbB; cl00649
862908003824	HMMPfam hit to PF02600, Disulfide bond formation protein DsbB, score 3.3e-25
862908003825	4 probable transmembrane helices predicted for BMS0982 by TMHMM2.0 at aa 20-42, 57-74, 81-103 and 127-149
862908003826	M14 family of metallocarboxypeptidases and related proteins; Region: Peptidase_M14_like; cl11393
862908003827	active site
862908003828	Zn binding site [ion binding]; other site
862908003829	HMMPfam hit to PF00246, Peptidase M14, carboxypeptidase A, score 2.5e-65
862908003830	Signal peptide predicted for BMS0983 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.518 between residues 20 and 21
862908003831	Signal peptide predicted for BMS0984 by SignalP 2.0 HMM (Signal peptide probability 0.985) with cleavage site probability 0.941 between residues 17 and 18
862908003832	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
862908003833	HMMPfam hit to PF00639, PpiC-type peptidyl-prolyl cis-trans isomerase, score 6.3e-32
862908003834	PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature.
862908003835	This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cl14632
862908003836	active site
862908003837	metal binding site [ion binding]; metal-binding site
862908003838	acetyl-CoA synthetase; Provisional; Region: PRK00174
862908003839	Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme); Region: ACS; cd05966
862908003840	active site
862908003841	CoA binding site [chemical binding]; other site
862908003842	acyl-activating enzyme (AAE) consensus motif; other site
862908003843	AMP binding site [chemical binding]; other site
862908003844	acetate binding site [chemical binding]; other site
862908003845	HMMPfam hit to PF00501, AMP-dependent synthetase and ligase, score 4.7e-124
862908003846	PS00455 Putative AMP-binding domain signature.
862908003847	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
862908003848	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908003849	NAD(P) binding site [chemical binding]; other site
862908003850	active site
862908003851	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
862908003852	GH3 auxin-responsive promoter; Region: GH3; pfam03321
862908003853	HMMPfam hit to PF03321, GH3 auxin-responsive promoter, score 0.0013
862908003854	5 probable transmembrane helices predicted for BMS0991 by TMHMM2.0 at aa 5-27, 42-61, 74-93, 108-130 and 143-165
862908003855	The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid.  N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a...; Region: Ntn_hydrolase; cl00467
862908003856	active site
862908003857	Signal peptide predicted for BMS0992 by SignalP 2.0 HMM (Signal peptide probability 0.919) with cleavage site probability 0.646 between residues 24 and 25
862908003858	Predicted flavoprotein [General function prediction only]; Region: COG0431
862908003859	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
862908003860	HMMPfam hit to PF03358, NADPH-dependent FMN reductase, score 8e-07
862908003861	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
862908003862	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
862908003863	active site
862908003864	HMMPfam hit to PF00849, Pseudouridine synthase, score 3.3e-24
862908003865	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
862908003866	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
862908003867	active site
862908003868	HMMPfam hit to PF00849, Pseudouridine synthase, score 1.6e-19
862908003869	Domain of unknown function (DUF4186); Region: DUF4186; pfam13811
862908003870	Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]; Region: CzcD; COG1230
862908003871	HMMPfam hit to PF01545, Cation efflux protein, score 2.8e-73
862908003872	5 probable transmembrane helices predicted for BMS0997 by TMHMM2.0 at aa 20-42, 85-107, 117-139, 152-174 and 179-201
862908003873	Signal peptide predicted for BMS0998 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.876 between residues 19 and 20
862908003874	Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: TolC; COG1538
862908003875	heavy metal efflux pump, CzcA family; Region: 2A0601; TIGR00914
862908003876	HMMPfam hit to PF00873, Acriflavin resistance protein, score 0
862908003877	12 probable transmembrane helices predicted for BMS1001 by TMHMM2.0 at aa 28-47, 359-381, 386-403, 413-432, 468-490, 505-527, 552-574, 896-915, 922-944, 948-970, 997-1019 and 1029-1051
862908003878	PS00017 ATP/GTP-binding site motif A (P-loop).
862908003879	4 probable transmembrane helices predicted for BMS1002 by TMHMM2.0 at aa 15-37, 44-63, 78-95 and 102-124
862908003880	Na+-driven multidrug efflux pump [Defense mechanisms]; Region: NorM; COG0534
862908003881	Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM; Region: MATE_NorM_like; cd13131
862908003882	cation binding site [ion binding]; other site
862908003883	12 probable transmembrane helices predicted for BMS1004 by TMHMM2.0 at aa 13-35, 50-72, 93-115, 125-147, 160-179, 189-211, 237-259, 274-296, 317-339, 354-376, 383-405 and 415-437
862908003884	HMMPfam hit to PF01554, Multi antimicrobial extrusion protein MatE, score 9.7e-23
862908003885	HMMPfam hit to PF01554, Multi antimicrobial extrusion protein MatE, score 7e-26
862908003886	Predicted exporters of the RND superfamily [General function prediction only]; Region: COG1033
862908003887	11 probable transmembrane helices predicted for BMS1005 by TMHMM2.0 at aa 15-37, 222-241, 246-268, 275-297, 350-372, 407-425, 608-627, 632-654, 664-686, 707-726 and 736-758
862908003888	Signal peptide predicted for BMS1005 by SignalP 2.0 HMM (Signal peptide probability 0.962) with cleavage site probability 0.323 between residues 37 and 38
862908003889	MerR HTH family regulatory protein; Region: MerR_1; pfam13411
862908003890	Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA; Region: HTH_MlrA-CarA; cd01104
862908003891	DNA binding residues [nucleotide binding]
862908003892	B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase; Region: B12-binding_like; cl00293
862908003893	1 probable transmembrane helix predicted for BMS1008 by TMHMM2.0 at aa 15-34
862908003894	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908003895	Signal peptide predicted for BMS1009 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.673 between residues 23 and 24
862908003896	Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]; Region: CDA1; COG0726
862908003897	Catalytic NodB homology domain of rhizobial NodB-like proteins; Region: CE4_NodB_like_6s_7s; cd10917
862908003898	NodB motif; other site
862908003899	active site
862908003900	catalytic site [active]
862908003901	metal binding site [ion binding]; metal-binding site
862908003902	HMMPfam hit to PF01522, Polysaccharide deacetylase, score 3.1e-23
862908003903	Signal peptide predicted for BMS1010 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.988 between residues 19 and 20
862908003904	putative DNA-binding transcriptional regulator; Reviewed; Region: PRK00347
862908003905	HMMPfam hit to PF03749, Sugar fermentation stimulation protein, score 2.9e-83
862908003906	PS00697 ATP-dependent DNA ligase AMP-binding site.
862908003907	PS00017 ATP/GTP-binding site motif A (P-loop).
862908003908	c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]; Region: COG2206
862908003909	HD domain; Region: HD_5; pfam13487
862908003910	HMMPfam hit to PF00072, Response regulator receiver, score 0.0046
862908003911	c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]; Region: COG2206
862908003912	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
862908003913	Zn2+ binding site [ion binding]; other site
862908003914	Mg2+ binding site [ion binding]; other site
862908003915	S-adenosylmethionine-dependent methyltransferase; Region: Methyltrans_SAM; pfam10672
862908003916	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
862908003917	GAF domain; Region: GAF; pfam01590
862908003918	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908003919	dimer interface [polypeptide binding]; other site
862908003920	phosphorylation site [posttranslational modification]
862908003921	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908003922	ATP binding site [chemical binding]; other site
862908003923	Mg2+ binding site [ion binding]; other site
862908003924	G-X-G motif; other site
862908003925	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 2e-08
862908003926	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 3e-17
862908003927	Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which...; Region: ZnMc; cl00064
862908003928	Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which...; Region: ZnMc; cl00064
862908003929	active site
862908003930	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908003931	Signal peptide predicted for BMS1016 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.622 between residues 24 and 25
862908003932	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
862908003933	active site
862908003934	HMMPfam hit to PF00156, Phosphoribosyltransferase, score 1.8e-16
862908003935	Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS...; Region: EcCS_like; cd06114
862908003936	dimer interface [polypeptide binding]; other site
862908003937	Citrate synthase; Region: Citrate_synt; pfam00285
862908003938	active site
862908003939	citrylCoA binding site [chemical binding]; other site
862908003940	NADH binding [chemical binding]; other site
862908003941	cationic pore residues; other site
862908003942	oxalacetate/citrate binding site [chemical binding]; other site
862908003943	coenzyme A binding site [chemical binding]; other site
862908003944	catalytic triad [active]
862908003945	HMMPfam hit to PF00285, Citrate synthase, score 4.9e-174
862908003946	PS00480 Citrate synthase signature.
862908003947	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908003948	S-adenosylmethionine binding site [chemical binding]; other site
862908003949	Transcriptional regulator [Transcription]; Region: LysR; COG0583
862908003950	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908003951	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
862908003952	dimerization interface [polypeptide binding]; other site
862908003953	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 2.5e-06
862908003954	HMMPfam hit to PF03466, LysR, substrate-binding, score 1.3e-17
862908003955	50S ribosomal protein L31 type B; Reviewed; Region: rpmE2; PRK01678
862908003956	HMMPfam hit to PF01197, Ribosomal protein L31, score 1.5e-20
862908003957	PS01143 Ribosomal protein L31 signature.
862908003958	50S ribosomal protein L33; Validated; Region: rpmG; PRK00595
862908003959	HMMPfam hit to PF00471, Ribosomal protein L33, score 1.7e-18
862908003960	Response regulator receiver domain; Region: Response_reg; pfam00072
862908003961	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908003962	active site
862908003963	phosphorylation site [posttranslational modification]
862908003964	intermolecular recognition site; other site
862908003965	dimerization interface [polypeptide binding]; other site
862908003966	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
862908003967	Zn2+ binding site [ion binding]; other site
862908003968	Mg2+ binding site [ion binding]; other site
862908003969	HMMPfam hit to PF00072, Response regulator receiver, score 0.00014
862908003970	HMMPfam hit to PF01966, Metal-dependent phosphohydrolase, HD subdomain, score 4.7e-07
862908003971	Domain of unknown function (DUF4340); Region: DUF4340; pfam14238
862908003972	1 probable transmembrane helix predicted for BMS1025 by TMHMM2.0 at aa 12-34
862908003973	Biopolymer transport proteins [Intracellular trafficking and secretion]; Region: TolQ; COG0811
862908003974	3 probable transmembrane helices predicted for BMS1026 by TMHMM2.0 at aa 5-27, 108-130 and 150-172
862908003975	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel, score 2.2e-30
862908003976	Biopolymer transport protein [Intracellular trafficking and secretion]; Region: ExbD; COG0848
862908003977	Biopolymer transport protein ExbD/TolR; Region: ExbD; pfam02472
862908003978	HMMPfam hit to PF02472, Biopolymer transport protein ExbD/TolR, score 2.3e-29
862908003979	1 probable transmembrane helix predicted for BMS1027 by TMHMM2.0 at aa 13-35
862908003980	Peptidase S8 family domain in Subtilisin-like proteins; Region: Peptidases_S8_Subtilisin_like; cd07473
862908003981	catalytic triad [active]
862908003982	putative active site [active]
862908003983	CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; Region: CUB; cl00049
862908003984	Signal peptide predicted for BMS1029 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.812 between residues 21 and 22
862908003985	HMMPfam hit to PF00082, Peptidase S8 and S53, subtilisin, kexin, sedolisin, score 2.8e-69
862908003986	PS00136 Serine proteases, subtilase family, aspartic acid active site.
862908003987	PS00137 Serine proteases, subtilase family, histidine active site.
862908003988	PS00138 Serine proteases, subtilase family, serine active site.
862908003989	HMMPfam hit to PF00431, CUB, score 0.0033
862908003990	Brown fat-inducible thioesterase (BFIT).  Brain acyl-CoA hydrolase (BACH).  These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis; Region: BFIT_BACH; cd03442
862908003991	HMMPfam hit to PF03061, Thioesterase superfamily, score 5.4e-15
862908003992	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
862908003993	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
862908003994	active site
862908003995	metal binding site [ion binding]; metal-binding site
862908003996	Signal peptide predicted for BMS1031 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.711 between residues 22 and 23
862908003997	HMMPfam hit to PF00149, Metallophosphoesterase, score 0.00031
862908003998	4 probable transmembrane helices predicted for BMS1032 by TMHMM2.0 at aa 66-88, 98-120, 148-170 and 203-225
862908003999	50S ribosomal protein L28; Reviewed; Region: rpmB; PRK00359
862908004000	HMMPfam hit to PF00830, Ribosomal protein L28, score 5.4e-25
862908004001	2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy_3; cl17304
862908004002	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
862908004003	1 probable transmembrane helix predicted for BMS1036 by TMHMM2.0 at aa 5-24
862908004004	spore photoproduct lyase; Region: photo_TT_lyase; cl15393
862908004005	HMMPfam hit to PF04055, Radical SAM, score 0.011
862908004006	Phosphorylase superfamily; Region: PNP_UDP_1; cl00303
862908004007	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
862908004008	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
862908004009	active site
862908004010	catalytic tetrad [active]
862908004011	HMMPfam hit to PF00248, Aldo/keto reductase, score 2.1e-30
862908004012	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
862908004013	Glycosyl transferase family 2; Region: Glycos_transf_2; pfam00535
862908004014	active site
862908004015	HMMPfam hit to PF00535, Glycosyl transferase, family 2, score 6.7e-47
862908004016	PS00237 G-protein coupled receptors signature.
862908004017	Signal peptide predicted for BMS1041 by SignalP 2.0 HMM (Signal peptide probability 0.855) with cleavage site probability 0.458 between residues 23 and 24
862908004018	Saccharopine Dehydrogenase NAD-binding and catalytic domains; Region: SDH; cd12188
862908004019	active site
862908004020	ligand binding site [chemical binding]; other site
862908004021	homodimer interface [polypeptide binding]; other site
862908004022	NAD(P) binding site [chemical binding]; other site
862908004023	HMMPfam hit to PF01262, Alanine dehydrogenase/PNT, C-terminal, score 8.2e-09
862908004024	HMMPfam hit to PF05222, Alanine dehydrogenase/PNT, N-terminal, score 2.6e-18
862908004025	Signal peptide predicted for BMS1043 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.993 between residues 17 and 18
862908004026	Arginase-like and histone-like hydrolases; Region: Arginase_HDAC; cl17011
862908004027	active site
862908004028	metal binding site [ion binding]; metal-binding site
862908004029	HMMPfam hit to PF00850, Histone deacetylase superfamily, score 2.1e-07
862908004030	5' nucleotidase family; Region: 5_nucleotid; cl17687
862908004031	HMMPfam hit to PF05761, Purine 5'-nucleotidase, score 7.1e-79
862908004032	PS00761 Signal peptidases I signature 3.
862908004033	Signal peptide predicted for BMS1046 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 between residues 22 and 23
862908004034	Signal peptide predicted for BMS1047 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.616 between residues 20 and 21
862908004035	SIR2-like domain; Region: SIR2_2; pfam13289
862908004036	Ion channel; Region: Ion_trans_2; pfam07885
862908004037	2 probable transmembrane helices predicted for BMS1054 by TMHMM2.0 at aa 4-23 and 199-221
862908004038	Signal peptide predicted for BMS1054 by SignalP 2.0 HMM (Signal peptide probability 0.607) with cleavage site probability 0.358 between residues 17 and 18
862908004039	Putative FMN-binding domain; Region: FMN_bind_2; pfam04299
862908004040	HMMPfam hit to PF04299, Negative transcriptional regulator, score 8.5e-56
862908004041	Glycosyl hydrolase family 14; Region: Glyco_hydro_14; cl03185
862908004042	Signal peptide predicted for BMS1056 by SignalP 2.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.955 between residues 18 and 19
862908004043	HMMPfam hit to PF01373, Glycoside hydrolase, family 14, score 2.6e-99
862908004044	PS00506 Beta-amylase active site 1.
862908004045	PS00679 Beta-amylase active site 2.
862908004046	Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates...; Region: NK; cl17190
862908004047	active site
862908004048	PS00017 ATP/GTP-binding site motif A (P-loop).
862908004049	HupE / UreJ protein; Region: HupE_UreJ_2; pfam13795
862908004050	Signal peptide predicted for BMS1059 by SignalP 2.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.524 between residues 21 and 22
862908004051	6 probable transmembrane helices predicted for BMS1059 by TMHMM2.0 at aa 5-23, 38-60, 72-94, 128-145, 165-187 and 202-224
862908004052	Signal peptide predicted for BMS1060 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.977 between residues 18 and 19
862908004053	4 probable transmembrane helices predicted for BMS1061 by TMHMM2.0 at aa 4-22, 27-49, 64-81 and 88-110
862908004054	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
862908004055	Coenzyme A binding pocket [chemical binding]; other site
862908004056	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908004057	Signal peptide predicted for BMS1063 by SignalP 2.0 HMM (Signal peptide probability 0.835) with cleavage site probability 0.426 between residues 17 and 18
862908004058	Signal peptide predicted for BMS1064 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.824 between residues 16 and 17
862908004059	Signal peptide predicted for BMS1065 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.968 between residues 60 and 61
862908004060	6 probable transmembrane helices predicted for BMS1067 by TMHMM2.0 at aa 20-42, 63-85, 95-114, 127-149, 188-207 and 219-236
862908004061	Transcriptional regulator [Transcription]; Region: LysR; COG0583
862908004062	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908004063	LysR substrate binding domain; Region: LysR_substrate; pfam03466
862908004064	dimerization interface [polypeptide binding]; other site
862908004065	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 6.9e-07
862908004066	HMMPfam hit to PF03466, LysR, substrate-binding, score 2.4e-06
862908004067	Bacterial low temperature requirement A protein (LtrA); Region: LtrA; cl01754
862908004068	HMMPfam hit to PF06772, Bacterial low temperature requirement A, score 2.5e-34
862908004069	11 probable transmembrane helices predicted for BMS1069 by TMHMM2.0 at aa 21-43, 48-70, 83-105, 110-132, 144-163, 167-184, 229-251, 266-288, 305-327, 337-355 and 360-382
862908004070	CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This...; Region: Voltage_gated_ClC; cl02915
862908004071	Chloride channel protein EriC [Inorganic ion transport and metabolism]; Region: EriC; COG0038
862908004072	Cl- selectivity filter; other site
862908004073	Cl- binding residues [ion binding]; other site
862908004074	pore gating glutamate residue; other site
862908004075	dimer interface [polypeptide binding]; other site
862908004076	10 probable transmembrane helices predicted for BMS1070 by TMHMM2.0 at aa 29-51, 64-83, 103-125, 156-178, 191-210, 230-249, 270-292, 330-352, 357-379 and 384-406
862908004077	HMMPfam hit to PF00654, Cl- channel, voltage gated, score 2.8e-26
862908004078	topology modulation protein; Provisional; Region: PRK07261
862908004079	AAA domain; Region: AAA_17; pfam13207
862908004080	PS00017 ATP/GTP-binding site motif A (P-loop).
862908004081	Peptidase M15; Region: Peptidase_M15_3; cl01194
862908004082	Signal peptide predicted for BMS1074 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.851 between residues 24 and 25
862908004083	Signal peptide predicted for BMS1075 by SignalP 2.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.957 between residues 18 and 19
862908004084	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908004085	AAA domain; Region: AAA_22; pfam13401
862908004086	Walker A motif; other site
862908004087	ATP binding site [chemical binding]; other site
862908004088	Walker B motif; other site
862908004089	6 probable transmembrane helices predicted for BMS1077 by TMHMM2.0 at aa 400-422, 458-477, 482-504, 524-546, 550-569 and 608-625
862908004090	PS00017 ATP/GTP-binding site motif A (P-loop).
862908004091	Mechanosensitive ion channel; Region: MS_channel; pfam00924
862908004092	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscS; COG0668
862908004093	3 probable transmembrane helices predicted for BMS1078 by TMHMM2.0 at aa 15-37, 58-77 and 92-114
862908004094	HMMPfam hit to PF00924, MscS Mechanosensitive ion channel, score 3.1e-29
862908004095	PAS domain; Region: PAS_9; pfam13426
862908004096	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
862908004097	putative active site [active]
862908004098	heme pocket [chemical binding]; other site
862908004099	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
862908004100	PAS domain; Region: PAS_9; pfam13426
862908004101	putative active site [active]
862908004102	heme pocket [chemical binding]; other site
862908004103	FOG: PAS/PAC domain [Signal transduction mechanisms]; Region: AtoS; COG2202
862908004104	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
862908004105	putative active site [active]
862908004106	heme pocket [chemical binding]; other site
862908004107	FOG: PAS/PAC domain [Signal transduction mechanisms]; Region: AtoS; COG2202
862908004108	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
862908004109	putative active site [active]
862908004110	heme pocket [chemical binding]; other site
862908004111	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
862908004112	putative active site [active]
862908004113	heme pocket [chemical binding]; other site
862908004114	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
862908004115	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
862908004116	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
862908004117	dimer interface [polypeptide binding]; other site
862908004118	putative CheW interface [polypeptide binding]; other site
862908004119	HMMPfam hit to PF00785, PAC motif, score 0.00016
862908004120	HMMPfam hit to PF00785, PAC motif, score 1.2e-09
862908004121	HMMPfam hit to PF00785, PAC motif, score 7.1e-06
862908004122	HMMPfam hit to PF00785, PAC motif, score 2.1e-05
862908004123	HMMPfam hit to PF00015, Bacterial chemotaxis sensory transducer, score 1.6e-68
862908004124	CheR methyltransferase, all-alpha domain; Region: CheR_N; pfam03705
862908004125	Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]; Region: CheR; COG1352
862908004126	CheR methyltransferase, SAM binding domain; Region: CheR; pfam01739
862908004127	HMMPfam hit to PF03705, MCP methyltransferase, CheR-type, score 5.8e-11
862908004128	HMMPfam hit to PF01739, MCP methyltransferase, CheR-type, score 9.7e-44
862908004129	CheD chemotactic sensory transduction; Region: CheD; cl00810
862908004130	Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]; Region: CheW; COG0835
862908004131	CheW-like domain; Region: CheW; pfam01584
862908004132	CheW-like domain. CheW proteins are part of the chemotaxis signalling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and...; Region: CheW_like; cl00256
862908004133	HMMPfam hit to PF01584, CheW-like protein, score 3e-18
862908004134	HMMPfam hit to PF01584, CheW-like protein, score 1.1e-13
862908004135	HMMPfam hit to PF01584, CheW-like protein, score 1.3e-14
862908004136	Signal peptide predicted for BMS1083 by SignalP 2.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.618 between residues 17 and 18
862908004137	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908004138	SWIB/MDM2 domain; Region: SWIB; cl02489
862908004139	HMMPfam hit to PF02201, SWIB complex, BAF60b, score 9.2e-07
862908004140	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
862908004141	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
862908004142	substrate binding pocket [chemical binding]; other site
862908004143	membrane-bound complex binding site; other site
862908004144	hinge residues; other site
862908004145	Signal peptide predicted for BMS1085 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.991 between residues 19 and 20
862908004146	Predicted O-methyltransferase [General function prediction only]; Region: COG4122
862908004147	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908004148	S-adenosylmethionine binding site [chemical binding]; other site
862908004149	HMMPfam hit to PF01596, O-methyltransferase, family 3, score 3.7e-52
862908004150	TM2 domain; Region: TM2; cl00984
862908004151	TM2 domain; Region: TM2; cl00984
862908004152	HMMPfam hit to PF05154, TM2, score 3.3e-14
862908004153	4 probable transmembrane helices predicted for BMS1087 by TMHMM2.0 at aa 20-37, 42-64, 79-98 and 105-127
862908004154	HMMPfam hit to PF05154, TM2, score 6.6e-14
862908004155	Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily; Region: PI-PLCc_GDPD_SF; cl14615
862908004156	active site
862908004157	catalytic site [active]
862908004158	Signal peptide predicted for BMS1088 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.996 between residues 17 and 18
862908004159	Signal peptide predicted for BMS1089 by SignalP 2.0 HMM (Signal peptide probability 0.936) with cleavage site probability 0.935 between residues 31 and 32
862908004160	Domain of unknown function (DUF1931); Region: DUF1931; pfam09123
862908004161	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
862908004162	dimer interface [polypeptide binding]; other site
862908004163	Methyl-accepting chemotaxis protein (MCP) signalling domain; Region: MCPsignal; pfam00015
862908004164	putative CheW interface [polypeptide binding]; other site
862908004165	Signal peptide predicted for BMS1091 by SignalP 2.0 HMM (Signal peptide probability 0.787) with cleavage site probability 0.554 between residues 44 and 45
862908004166	2 probable transmembrane helices predicted for BMS1091 by TMHMM2.0 at aa 23-45 and 330-352
862908004167	PS00107 Protein kinases ATP-binding region signature.
862908004168	HMMPfam hit to PF00015, Bacterial chemotaxis sensory transducer, score 6.9e-41
862908004169	Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739
862908004170	Peptidase family M23; Region: Peptidase_M23; pfam01551
862908004171	Signal peptide predicted for BMS1092 by SignalP 2.0 HMM (Signal peptide probability 0.925) with cleavage site probability 0.623 between residues 20 and 21
862908004172	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908004173	HMMPfam hit to PF01551, Peptidase M23B, score 4.1e-38
862908004174	Protein of unknown function, DUF606; Region: DUF606; pfam04657
862908004175	5 probable transmembrane helices predicted for BMS1093 by TMHMM2.0 at aa 5-24, 34-56, 69-91, 95-114 and 127-146
862908004176	HMMPfam hit to PF04657, Protein of unknown function DUF606, score 2.3e-39
862908004177	Signal peptide predicted for BMS1093 by SignalP 2.0 HMM (Signal peptide probability 0.608) with cleavage site probability 0.402 between residues 21 and 22
862908004178	RmuC family; Region: RmuC; pfam02646
862908004179	1 probable transmembrane helix predicted for BMS1094 by TMHMM2.0 at aa 5-24
862908004180	HMMPfam hit to PF02646, Protein of unknown function DUF195, score 3.3e-57
862908004181	1 probable transmembrane helix predicted for BMS1095 by TMHMM2.0 at aa 7-29
862908004182	Response regulator receiver domain; Region: Response_reg; pfam00072
862908004183	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908004184	active site
862908004185	phosphorylation site [posttranslational modification]
862908004186	intermolecular recognition site; other site
862908004187	dimerization interface [polypeptide binding]; other site
862908004188	HMMPfam hit to PF00072, Response regulator receiver, score 2.1e-18
862908004189	Predicted esterase [General function prediction only]; Region: COG0400
862908004190	HMMPfam hit to PF02230, Phospholipase/Carboxylesterase, score 6.9e-28
862908004191	50S ribosomal protein L25/general stress protein Ctc; Reviewed; Region: PRK05618
862908004192	Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain; Region: Ribosomal_L25_TL5_CTC; cd00495
862908004193	5S rRNA interface [nucleotide binding]; other site
862908004194	CTC domain interface [polypeptide binding]; other site
862908004195	L16 interface [polypeptide binding]; other site
862908004196	HMMPfam hit to PF01386, Ribosomal protein L25, score 5.1e-11
862908004197	Signal peptide predicted for BMS1099 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.988 between residues 45 and 46
862908004198	PS00687 Aldehyde dehydrogenases glutamic acid active site.
862908004199	Domain of unknown function (DUF955); Region: DUF955; cl01076
862908004200	Signal peptide predicted for BMS1101 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.950 between residues 19 and 20
862908004201	Protein of unknown function (DUF962); Region: DUF962; cl01879
862908004202	HMMPfam hit to PF06127, Protein of unknown function DUF962, score 4e-39
862908004203	5 probable transmembrane helices predicted for BMS1102 by TMHMM2.0 at aa 20-42, 47-69, 74-93, 98-120 and 130-149
862908004204	isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional; Region: PRK11780
862908004205	Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1; Region: GATase1_ES1; cd03133
862908004206	conserved cys residue [active]
862908004207	HMMPfam hit to PF01965, ThiJ/PfpI, score 0.0012
862908004208	Putative methyltransferase; Region: Methyltransf_4; cl17290
862908004209	HMMPfam hit to PF02390, Putative methyltransferase, score 8.1e-11
862908004210	10 probable transmembrane helices predicted for BMS1105 by TMHMM2.0 at aa 4-26, 39-56, 66-88, 95-112, 122-141, 148-170, 185-207, 219-236, 240-262 and 274-290
862908004211	HMMPfam hit to PF00892, Protein of unknown function DUF6, score 3.4e-06
862908004212	glutaredoxin 2; Provisional; Region: PRK10387
862908004213	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
862908004214	C-terminal, alpha helical domain of the Glutathione S-transferase family; Region: GST_C_family; cl02776
862908004215	dimer interface [polypeptide binding]; other site
862908004216	N-terminal domain interface [polypeptide binding]; other site
862908004217	substrate binding pocket (H-site) [chemical binding]; other site
862908004218	PS00195 Glutaredoxin active site.
862908004219	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
862908004220	putative substrate translocation pore; other site
862908004221	Major Facilitator Superfamily; Region: MFS_1; pfam07690
862908004222	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
862908004223	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
862908004224	putative acyl-acceptor binding pocket; other site
862908004225	11 probable transmembrane helices predicted for BMS1107 by TMHMM2.0 at aa 15-37, 50-72, 92-114, 146-168, 172-194, 227-249, 264-281, 294-313, 337-359, 371-393 and 398-420
862908004226	HMMPfam hit to PF07690, , score 1.1e-12
862908004227	HMMPfam hit to PF01553, Phospholipid/glycerol acyltransferase, score 7.5e-25
862908004228	Domain of unknown function found in archaea, bacteria, and plants; Region: DUF296; cd11378
862908004229	trimer interface [polypeptide binding]; other site
862908004230	putative Zn binding site [ion binding]; other site
862908004231	HMMPfam hit to PF03479, Protein of unknown function DUF296, score 3.3e-12
862908004232	HAD superfamily, subfamily IIIB (Acid phosphatase); Region: Acid_phosphat_B; cl17236
862908004233	Signal peptide predicted for BMS1111 by SignalP 2.0 HMM (Signal peptide probability 0.788) with cleavage site probability 0.603 between residues 19 and 20
862908004234	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908004235	Major Facilitator Superfamily; Region: MFS_1; pfam07690
862908004236	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
862908004237	HMMPfam hit to PF07690, , score 9.9e-13
862908004238	10 probable transmembrane helices predicted for BMS1112 by TMHMM2.0 at aa 13-33, 43-65, 72-94, 98-120, 214-236, 251-270, 277-296, 301-318, 339-361 and 371-390
862908004239	PS00216 Sugar transport proteins signature 1.
862908004240	PS00017 ATP/GTP-binding site motif A (P-loop).
862908004241	Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and...; Region: TPP_enzymes; cl01629
862908004242	transketolase; Reviewed; Region: PRK05899
862908004243	TPP-binding site [chemical binding]; other site
862908004244	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
862908004245	PYR/PP interface [polypeptide binding]; other site
862908004246	dimer interface [polypeptide binding]; other site
862908004247	TPP binding site [chemical binding]; other site
862908004248	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
862908004249	HMMPfam hit to PF02780, Transketolase, C terminal, score 3.7e-22
862908004250	HMMPfam hit to PF02779, Transketolase, central region, score 1.4e-11
862908004251	HMMPfam hit to PF00456, Transketolase, N terminal, score 1e-14
862908004252	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
862908004253	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
862908004254	NAD(P) binding site [chemical binding]; other site
862908004255	catalytic residues [active]
862908004256	HMMPfam hit to PF00171, Aldehyde dehydrogenase, score 4.3e-100
862908004257	PS00687 Aldehyde dehydrogenases glutamic acid active site.
862908004258	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
862908004259	substrate binding pocket [chemical binding]; other site
862908004260	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
862908004261	membrane-bound complex binding site; other site
862908004262	hinge residues; other site
862908004263	Signal peptide predicted for BMS1117 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.973 between residues 17 and 18
862908004264	ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]; Region: RbsB; COG1879
862908004265	Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily; Region: PBP1_ABC_sugar_binding_like; cd01536
862908004266	ligand binding site [chemical binding]; other site
862908004267	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
862908004268	Signal peptide predicted for BMS1118 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.970 between residues 18 and 19
862908004269	Cytochrome C oxidase, cbb3-type, subunit III; Region: Cytochrome_CBB3; pfam13442
862908004270	1 probable transmembrane helix predicted for BMS1119 by TMHMM2.0 at aa 7-29
862908004271	PS00190 Cytochrome c family heme-binding site signature.
862908004272	PS00190 Cytochrome c family heme-binding site signature.
862908004273	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
862908004274	Coenzyme A binding pocket [chemical binding]; other site
862908004275	HMMPfam hit to PF00583, GCN5-related N-acetyltransferase, score 4e-05
862908004276	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
862908004277	putative aminophosphonate oxidoreductase; Region: Phn_aa_oxid; TIGR03329
862908004278	1 probable transmembrane helix predicted for BMS1123 by TMHMM2.0 at aa 20-39
862908004279	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 6.4e-77
862908004280	Domain of unknown function (DUF1338); Region: DUF1338; pfam07063
862908004281	Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily; Region: PI-PLCc_GDPD_SF; cl14615
862908004282	Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]; Region: UgpQ; COG0584
862908004283	active site
862908004284	catalytic site [active]
862908004285	HMMPfam hit to PF03009, Glycerophosphoryl diester phosphodiesterase, score 2.4e-09
862908004286	1 probable transmembrane helix predicted for BMS1126 by TMHMM2.0 at aa 4-23
862908004287	ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+; Region: ADPRase_NUDT5; cd03424
862908004288	dimer interface [polypeptide binding]; other site
862908004289	ADP-ribose binding site [chemical binding]; other site
862908004290	active site
862908004291	nudix motif; other site
862908004292	metal binding site [ion binding]; metal-binding site
862908004293	HMMPfam hit to PF00293, NUDIX hydrolase, score 6.3e-07
862908004294	PS00893 mutT domain signature.
862908004295	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
862908004296	LabA_like proteins; Region: LabA_like/DUF88; cl10034
862908004297	putative metal binding site [ion binding]; other site
862908004298	Uncharacterized conserved protein [Function unknown]; Region: COG1432
862908004299	HMMPfam hit to PF01936, Protein of unknown function DUF88, score 2e-09
862908004300	HMMPfam hit to PF00036, Calcium-binding EF-hand, score 0.067
862908004301	PS00018 EF-hand calcium-binding domain.
862908004302	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
862908004303	Signal peptide predicted for BMS1129 by SignalP 2.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.684 between residues 23 and 24
862908004304	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908004305	Signal peptide predicted for BMS1130 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.998 between residues 21 and 22
862908004306	Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis; Region: LPLAT; cl17185
862908004307	putative acyl-acceptor binding pocket; other site
862908004308	HMMPfam hit to PF04028, Protein of unknown function DUF374, score 1.5e-11
862908004309	RNA-binding proteins (RRM domain) [General function prediction only]; Region: COG0724
862908004310	RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169
862908004311	HMMPfam hit to PF00076, RNA-binding region RNP-1 (RNA recognition motif), score 3.7e-18
862908004312	PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.
862908004313	L,D-transpeptidase catalytic domain; Region: YkuD_2; pfam13645
862908004314	Outer membrane protein (OmpH-like); Region: OmpH; smart00935
862908004315	Signal peptide predicted for BMS1133 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.986 between residues 19 and 20
862908004316	Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]; Region: Nei; COG0266
862908004317	N-terminal domain of Escherichia coli Fpg1/MutM and related bacterial DNA glycosylases; Region: EcFpg-like_N; cd08966
862908004318	DNA binding site [nucleotide binding]
862908004319	catalytic residue [active]
862908004320	H2TH interface [polypeptide binding]; other site
862908004321	putative catalytic residues [active]
862908004322	turnover-facilitating residue; other site
862908004323	intercalation triad [nucleotide binding]; other site
862908004324	8OG recognition residue [nucleotide binding]; other site
862908004325	putative reading head residues; other site
862908004326	Formamidopyrimidine-DNA glycosylase H2TH domain; Region: H2TH; pfam06831
862908004327	PS00190 Cytochrome c family heme-binding site signature.
862908004328	HMMPfam hit to PF06831, Formamidopyrimidine-DNA glycolase, score 1.5e-16
862908004329	HMMPfam hit to PF01149, Formamidopyrimidine-DNA glycolase, score 7.6e-21
862908004330	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl17200
862908004331	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
862908004332	salt bridge; other site
862908004333	non-specific DNA binding site [nucleotide binding]; other site
862908004334	sequence-specific DNA binding site [nucleotide binding]; other site
862908004335	HMMPfam hit to PF01381, Helix-turn-helix motif, score 2.1e-12
862908004336	3 probable transmembrane helices predicted for BMS1139 by TMHMM2.0 at aa 20-34, 47-64 and 69-91
862908004337	Domain of unknown function (DUF4363); Region: DUF4363; pfam14276
862908004338	Signal peptide predicted for BMS1141 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 between residues 19 and 20
862908004339	Phospholipid methyltransferase; Region: PEMT; cl17370
862908004340	HMMPfam hit to PF04140, Isoprenylcysteine carboxyl methyltransferase, score 0.00018
862908004341	3 probable transmembrane helices predicted for BMS1142 by TMHMM2.0 at aa 4-21, 28-47 and 85-107
862908004342	serine/threonine protein kinase; Provisional; Region: PRK11768
862908004343	Phosphotransferase enzyme family; Region: APH; pfam01636
862908004344	HMMPfam hit to PF01636, Aminoglycoside phosphotransferase, score 4e-12
862908004345	Nitronate monooxygenase; Region: NMO; pfam03060
862908004346	2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase...; Region: NPD_like; cd04730
862908004347	FMN binding site [chemical binding]; other site
862908004348	substrate binding site [chemical binding]; other site
862908004349	putative catalytic residue [active]
862908004350	HMMPfam hit to PF03060, 2-nitropropane dioxygenase, NPD, score 3.1e-66
862908004351	PS00912 Dihydroorotate dehydrogenase signature 2.
862908004352	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
862908004353	putative DNA binding site [nucleotide binding]; other site
862908004354	putative Zn2+ binding site [ion binding]; other site
862908004355	HMMPfam hit to PF01022, Bacterial regulatory protein, ArsR, score 6.7e-07
862908004356	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
862908004357	putative substrate translocation pore; other site
862908004358	HMMPfam hit to PF07690, , score 1.3e-20
862908004359	10 probable transmembrane helices predicted for BMS1147 by TMHMM2.0 at aa 7-29, 39-56, 63-85, 95-117, 124-146, 168-190, 203-222, 232-254, 261-283 and 319-341
862908004360	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908004361	NAD(P) binding site [chemical binding]; other site
862908004362	active site
862908004363	Glutathione-dependent formaldehyde-activating enzyme; Region: GFA; pfam04828
862908004364	HMMPfam hit to PF04828, Glutathione-dependent formaldehyde-activating, GFA, score 3.3e-08
862908004365	Rrf2 family protein; Region: rrf2_super; TIGR00738
862908004366	Transcriptional regulator; Region: Rrf2; pfam02082
862908004367	HMMPfam hit to PF02082, Protein of unknown function UPF0074, score 2.5e-27
862908004368	Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]; Region: TrxB; COG0492
862908004369	HMMPfam hit to PF00070, FAD-dependent pyridine nucleotide-disulphide oxidoreductase, score 9.3e-08
862908004370	SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]; Region: SmtA; COG0500
862908004371	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908004372	S-adenosylmethionine binding site [chemical binding]; other site
862908004373	Beta-propeller repeat; Region: SBBP; pfam06739
862908004374	Beta-propeller repeat; Region: SBBP; pfam06739
862908004375	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908004376	Phytanoyl-CoA dioxygenase (PhyH); Region: PhyH; pfam05721
862908004377	HMMPfam hit to PF05721, Phytanoyl-CoA dioxygenase, score 4.2e-09
862908004378	HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life; Region: HINT_subgroup; cd01277
862908004379	HIT family signature motif; other site
862908004380	catalytic residue [active]
862908004381	HMMPfam hit to PF01230, Histidine triad (HIT) protein, score 1.6e-30
862908004382	Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063
862908004383	Interdomain contacts; other site
862908004384	Cytokine receptor motif; other site
862908004385	Concanavalin A-like lectin/glucanases superfamily; Region: Laminin_G_3; pfam13385
862908004386	HMMPfam hit to PF00041, Fibronectin, type III, score 1.9e-14
862908004387	Outer membrane protein (porin) [Cell envelope biogenesis, outer membrane]; Region: OmpC; COG3203
862908004388	Porin superfamily.  These outer membrane channels share a beta-barrel structure that differ in strand and shear number.  Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl17244
862908004389	Signal peptide predicted for BMS1158 by SignalP 2.0 HMM (Signal peptide probability 0.948) with cleavage site probability 0.929 between residues 24 and 25
862908004390	PS00228 Tubulin-beta mRNA autoregulation signal.
862908004391	1 probable transmembrane helix predicted for BMS1160 by TMHMM2.0 at aa 293-315
862908004392	Signal peptide predicted for BMS1161 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.499 between residues 15 and 16
862908004393	PS00139 Eukaryotic thiol (cysteine) proteases cysteine active site.
862908004394	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
862908004395	dimerization interface [polypeptide binding]; other site
862908004396	putative DNA binding site [nucleotide binding]; other site
862908004397	putative Zn2+ binding site [ion binding]; other site
862908004398	HMMPfam hit to PF01022, Bacterial regulatory protein, ArsR, score 2.2e-11
862908004399	NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]; Region: NemA; COG1902
862908004400	Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a...; Region: OYE_like_FMN; cd02933
862908004401	FMN binding site [chemical binding]; other site
862908004402	active site
862908004403	substrate binding site [chemical binding]; other site
862908004404	catalytic residue [active]
862908004405	HMMPfam hit to PF00724, NADH:flavin oxidoreductase/NADH oxidase, score 1.1e-95
862908004406	molybdenum cofactor biosynthesis protein A, bacterial; Region: moaA; TIGR02666
862908004407	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908004408	FeS/SAM binding site; other site
862908004409	Molybdenum Cofactor Synthesis C; Region: Mob_synth_C; pfam06463
862908004410	HMMPfam hit to PF04055, Radical SAM, score 1.1e-12
862908004411	HMMPfam hit to PF06463, Molybdenum cofactor synthesis C, score 5e-32
862908004412	PS00527 Ribosomal protein S14 signature.
862908004413	putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional; Region: PRK14500
862908004414	MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine...; Region: MoaC_PE; cd01420
862908004415	trimer interface [polypeptide binding]; other site
862908004416	dimer interface [polypeptide binding]; other site
862908004417	putative active site [active]
862908004418	MobA catalyzes the formation of molybdopterin guanine dinucleotide; Region: MobA; cd02503
862908004419	GTP binding site; other site
862908004420	HMMPfam hit to PF01967, Molybdopterin cofactor biosynthesis protein MoaC, score 1.6e-66
862908004421	Ubiquitin domain of MoaD-like proteins; Region: MoaD; cd00754
862908004422	MoaE interaction surface [polypeptide binding]; other site
862908004423	MoeB interaction surface [polypeptide binding]; other site
862908004424	thiocarboxylated glycine; other site
862908004425	HMMPfam hit to PF02597, ThiamineS, score 5.1e-15
862908004426	MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoaE; cd00756
862908004427	MoaE homodimer interface [polypeptide binding]; other site
862908004428	MoaD interaction [polypeptide binding]; other site
862908004429	active site residues [active]
862908004430	ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD...; Region: ThiF_MoeB_HesA_family; cd00757
862908004431	thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily; Region: adenyl_thiF; TIGR02356
862908004432	ATP binding site [chemical binding]; other site
862908004433	substrate interface [chemical binding]; other site
862908004434	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
862908004435	active site residue [active]
862908004436	HMMPfam hit to PF02391, Molybdopterin biosynthesis MoaE, score 7.7e-47
862908004437	HMMPfam hit to PF00899, UBA/THIF-type NAD/FAD binding fold, score 1.9e-50
862908004438	HMMPfam hit to PF05237, MoeZ/MoeB, score 0.00016
862908004439	YcaO domain protein; Region: TIGR03549
862908004440	OsmC-like protein; Region: OsmC; pfam02566
862908004441	YcaO-like family; Region: YcaO; pfam02624
862908004442	HMMPfam hit to PF02624, Protein of unknown function DUF181, score 8.1e-131
862908004443	Patatin-like phospholipase; Region: Patatin; pfam01734
862908004444	Signal peptide predicted for BMS1170 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 20 and 21
862908004445	HMMPfam hit to PF01734, Patatin, score 5.4e-05
862908004446	Signal peptide predicted for BMS1171 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 between residues 20 and 21
862908004447	N-terminal glutamine amidase; Region: Nt_Gln_amidase; pfam09764
862908004448	Signal peptide predicted for BMS1172 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.519 between residues 18 and 19
862908004449	hypothetical protein; Provisional; Region: PRK10621
862908004450	Sulfite exporter TauE/SafE; Region: TauE; pfam01925
862908004451	7 probable transmembrane helices predicted for BMS1173 by TMHMM2.0 at aa 9-31, 41-63, 75-97, 102-119, 142-164, 201-223 and 236-253
862908004452	HMMPfam hit to PF01925, Protein of unknown function DUF81, score 1.8e-17
862908004453	1 probable transmembrane helix predicted for BMS1174 by TMHMM2.0 at aa 7-29
862908004454	tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]; Region: COG0042
862908004455	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
862908004456	FMN binding site [chemical binding]; other site
862908004457	active site
862908004458	catalytic residues [active]
862908004459	substrate binding site [chemical binding]; other site
862908004460	HMMPfam hit to PF01207, Dihydrouridine synthase, DuS, score 2.2e-12
862908004461	PS01136 Uncharacterized protein family UPF0034 signature.
862908004462	Signal peptide predicted for BMS1176 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 between residues 19 and 20
862908004463	YaeQ protein; Region: YaeQ; pfam07152
862908004464	HMMPfam hit to PF07152, YaeQ, score 2.5e-62
862908004465	Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: Gst; COG0625
862908004466	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
862908004467	C-terminal, alpha helical domain of the Glutathione S-transferase family; Region: GST_C_family; cl02776
862908004468	N-terminal domain interface [polypeptide binding]; other site
862908004469	dimer interface [polypeptide binding]; other site
862908004470	substrate binding pocket (H-site) [chemical binding]; other site
862908004471	HMMPfam hit to PF00043, Glutathione S-transferase, C-terminal, score 4.7e-15
862908004472	HMMPfam hit to PF02798, Glutathione S-transferase, N-terminal, score 1.9e-23
862908004473	Signal peptide predicted for BMS1179 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.793 between residues 21 and 22
862908004474	Signal peptide predicted for BMS1180 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.981 between residues 18 and 19
862908004475	Glutaminase [Amino acid transport and metabolism]; Region: GlsA; COG2066
862908004476	glutaminase; Provisional; Region: PRK00971
862908004477	HMMPfam hit to PF04960, Glutaminase, score 6.6e-169
862908004478	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
862908004479	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
862908004480	dimer interface [polypeptide binding]; other site
862908004481	putative CheW interface [polypeptide binding]; other site
862908004482	HMMPfam hit to PF00015, Bacterial chemotaxis sensory transducer, score 1e-41
862908004483	2 probable transmembrane helices predicted for BMS1182 by TMHMM2.0 at aa 10-29 and 410-432
862908004484	Signal peptide predicted for BMS1182 by SignalP 2.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.309 between residues 31 and 32
862908004485	Sodium/hydrogen exchanger family; Region: Na_H_Exchanger; pfam00999
862908004486	Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; cl10482
862908004487	TrkA-C domain; Region: TrkA_C; pfam02080
862908004488	HMMPfam hit to PF02080, TrkA-C, score 3.2e-09
862908004489	HMMPfam hit to PF00999, Sodium/hydrogen exchanger, score 3.9e-45
862908004490	10 probable transmembrane helices predicted for BMS1183 by TMHMM2.0 at aa 7-29, 39-58, 71-93, 98-120, 168-190, 205-236, 248-270, 280-302, 315-337 and 342-364
862908004491	Signal peptide predicted for BMS1183 by SignalP 2.0 HMM (Signal peptide probability 0.969) with cleavage site probability 0.781 between residues 25 and 26
862908004492	S-formylglutathione hydrolase; Region: PLN02442
862908004493	S-formylglutathione hydrolase; Region: fghA_ester_D; TIGR02821
862908004494	HMMPfam hit to PF00756, Putative esterase, score 7.4e-59
862908004495	PS00120 Lipases, serine active site.
862908004496	class III alcohol dehydrogenases; Region: alcohol_DH_class_III; cd08300
862908004497	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; Region: adh_III_F_hyde; TIGR02818
862908004498	substrate binding site [chemical binding]; other site
862908004499	catalytic Zn binding site [ion binding]; other site
862908004500	NAD binding site [chemical binding]; other site
862908004501	structural Zn binding site [ion binding]; other site
862908004502	dimer interface [polypeptide binding]; other site
862908004503	HMMPfam hit to PF00107, Zinc-containing alcohol dehydrogenase superfamily, score 2e-145
862908004504	PS00059 Zinc-containing alcohol dehydrogenases signature.
862908004505	Transcriptional regulator [Transcription]; Region: LysR; COG0583
862908004506	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908004507	The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422
862908004508	putative effector binding pocket; other site
862908004509	dimerization interface [polypeptide binding]; other site
862908004510	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 9.7e-18
862908004511	HMMPfam hit to PF03466, LysR, substrate-binding, score 3.9e-25
862908004512	Dopa 4,5-dioxygenase family; Region: DOPA_dioxygen; pfam08883
862908004513	Cupin-like domain; Region: Cupin_8; pfam13621
862908004514	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
862908004515	uncharacterized flavoprotein, PP_4765 family; Region: flavo_PP4765; TIGR03862
862908004516	HMMPfam hit to PF03486, HI0933-like protein, score 6.1e-60
862908004517	tRNA pseudouridine synthase D (TruD); Region: TruD; pfam01142
862908004518	Pseudouridine synthase, similar to Escherichia coli TruD; Region: PseudoU_synth_EcTruD; cd02575
862908004519	Permutation of conserved domain; other site
862908004520	active site
862908004521	Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi); Region: PseudoU_synth; cl00130
862908004522	HMMPfam hit to PF01142, tRNA pseudouridine synthase D, TruD, score 7.7e-96
862908004523	Signal peptide predicted for BMS1192 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 between residues 18 and 19
862908004524	NnrS protein; Region: NnrS; pfam05940
862908004525	HMMPfam hit to PF05940, NnrS, score 9.2e-16
862908004526	11 probable transmembrane helices predicted for BMS1193 by TMHMM2.0 at aa 20-42, 54-76, 80-102, 107-129, 139-161, 180-197, 201-218, 230-252, 262-284, 296-318 and 323-345
862908004527	Signal peptide predicted for BMS1195 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.990 between residues 18 and 19
862908004528	Signal peptide predicted for BMS1196 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 20 and 21
862908004529	FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]; Region: FkpA; COG0545
862908004530	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; Region: FKBP_N; pfam01346
862908004531	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
862908004532	HMMPfam hit to PF01346, FKBP-type peptidyl-prolyl isomerase, N-terminal, score 5.2e-17
862908004533	HMMPfam hit to PF00254, Peptidylprolyl isomerase, FKBP-type, score 2.5e-44
862908004534	PS00454 FKBP-type peptidyl-prolyl cis-trans isomerase signature 2.
862908004535	Signal peptide predicted for BMS1198 by SignalP 2.0 HMM (Signal peptide probability 0.757) with cleavage site probability 0.332 between residues 21 and 22
862908004536	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908004537	Gram-negative bacterial tonB protein; Region: TonB; pfam03544
862908004538	Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]; Region: TonB; COG0810
862908004539	Signal peptide predicted for BMS1199 by SignalP 2.0 HMM (Signal peptide probability 0.912) with cleavage site probability 0.602 between residues 22 and 23
862908004540	HMMPfam hit to PF03544, Gram-negative bacterial tonB protein, score 7.9e-11
862908004541	glutaminyl-tRNA synthetase; Provisional; Region: PRK05347
862908004542	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
862908004543	active site
862908004544	HIGH motif; other site
862908004545	nucleotide binding site [chemical binding]; other site
862908004546	catalytic core domain of glutaminyl-tRNA synthetase; Region: GlnRS_core; cd00807
862908004547	KMSKS motif; other site
862908004548	tRNA synthetases class I (E and Q), anti-codon binding domain; Region: tRNA-synt_1c_C; pfam03950
862908004549	HMMPfam hit to PF00749, Glutamyl-tRNA synthetase, class Ic, score 5.5e-137
862908004550	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
862908004551	HMMPfam hit to PF03950, Glutamyl-tRNA synthetase, class Ic, score 6.7e-79
862908004552	glutamyl-tRNA synthetase; Reviewed; Region: gltX; PRK01406
862908004553	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
862908004554	HIGH motif; other site
862908004555	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
862908004556	active site
862908004557	KMSKS motif; other site
862908004558	HMMPfam hit to PF00749, Glutamyl-tRNA synthetase, class Ic, score 3.2e-143
862908004559	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
862908004560	PS00037 Myb DNA-binding domain repeat signature 1.
862908004561	tyrosyl-tRNA synthetase; Validated; Region: PRK05912
862908004562	catalytic core domain of tyrosinyl-tRNA synthetase; Region: TyrRS_core; cd00805
862908004563	active site
862908004564	HIGH motif; other site
862908004565	dimer interface [polypeptide binding]; other site
862908004566	KMSKS motif; other site
862908004567	HMMPfam hit to PF00579, Aminoacyl-tRNA synthetase, class Ib, score 1.1e-101
862908004568	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cl00086
862908004569	HMMPfam hit to PF01627, Hpt, score 9.3e-10
862908004570	START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; Region: SRPBCC; cl14643
862908004571	hydrophobic ligand binding site; other site
862908004572	Signal peptide predicted for BMS1204 by SignalP 2.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.985 between residues 16 and 17
862908004573	Fatty acid hydroxylase superfamily; Region: FA_hydroxylase; cl01132
862908004574	Sterol desaturase [Lipid metabolism]; Region: ERG3; COG3000
862908004575	3 probable transmembrane helices predicted for BMS1205 by TMHMM2.0 at aa 84-106, 136-158 and 165-187
862908004576	HMMPfam hit to PF04116, Fatty acid hydroxylase, score 3e-38
862908004577	Membrane-associated phospholipid phosphatase [Lipid metabolism]; Region: PgpB; COG0671
862908004578	PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid...; Region: PAP2_like; cd01610
862908004579	active site
862908004580	Signal peptide predicted for BMS1206 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.872 between residues 20 and 21
862908004581	4 probable transmembrane helices predicted for BMS1206 by TMHMM2.0 at aa 7-29, 87-109, 122-144 and 184-201
862908004582	HMMPfam hit to PF01569, Phosphoesterase, PA-phosphatase related, score 0.00074
862908004583	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
862908004584	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908004585	NAD(P) binding site [chemical binding]; other site
862908004586	active site
862908004587	pyridoxal phosphate-dependent acyltransferase, putative; Region: gly_Cac_T_rel; TIGR01825
862908004588	KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS); Region: KBL_like; cd06454
862908004589	substrate-cofactor binding pocket; other site
862908004590	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908004591	catalytic residue [active]
862908004592	HMMPfam hit to PF00155, Aminotransferase, class I and II, score 6.9e-25
862908004593	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908004594	PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site.
862908004595	1 probable transmembrane helix predicted for BMS1210 by TMHMM2.0 at aa 5-24
862908004596	PilZ domain; Region: PilZ; pfam07238
862908004597	aminopeptidase N; Provisional; Region: pepN; PRK14015
862908004598	Peptidase M1 family containing Aminopeptidase N; Region: M1_APN_1; cd09600
862908004599	active site
862908004600	Zn binding site [ion binding]; other site
862908004601	HMMPfam hit to PF01433, Peptidase M1, membrane alanine aminopeptidase, score 5.9e-56
862908004602	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908004603	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cl17432
862908004604	membrane-bound complex binding site; other site
862908004605	hinge residues; other site
862908004606	Signal peptide predicted for BMS1213 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.990 between residues 20 and 21
862908004607	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
862908004608	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
862908004609	substrate binding pocket [chemical binding]; other site
862908004610	membrane-bound complex binding site; other site
862908004611	hinge residues; other site
862908004612	Signal peptide predicted for BMS1214 by SignalP 2.0 HMM (Signal peptide probability 0.655) with cleavage site probability 0.439 between residues 17 and 18
862908004613	Signal peptide predicted for BMS1216 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 between residues 24 and 25
862908004614	Sterol desaturase [Lipid metabolism]; Region: ERG3; COG3000
862908004615	Fatty acid hydroxylase superfamily; Region: FA_hydroxylase; pfam04116
862908004616	4 probable transmembrane helices predicted for BMS1217 by TMHMM2.0 at aa 21-40, 75-97, 110-132 and 191-213
862908004617	Signal peptide predicted for BMS1218 by SignalP 2.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.977 between residues 21 and 22
862908004618	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908004619	di-heme enzyme, MXAN_0977 family; Region: MXAN_0977_Heme2; TIGR04039
862908004620	PS00190 Cytochrome c family heme-binding site signature.
862908004621	HMMPfam hit to PF03150, Di-haem cytochrome c peroxidase, score 2.9e-10
862908004622	PS00190 Cytochrome c family heme-binding site signature.
862908004623	1 probable transmembrane helix predicted for BMS1219 by TMHMM2.0 at aa 20-37
862908004624	Signal peptide predicted for BMS1219 by SignalP 2.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.972 between residues 35 and 36
862908004625	Imelysin; Region: Peptidase_M75; cl09159
862908004626	Protein of unknown function (DUF1111); Region: DUF1111; pfam06537
862908004627	Predicted thiol oxidoreductase [Energy production and conversion]; Region: COG3488
862908004628	Signal peptide predicted for BMS1221 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.934 between residues 25 and 26
862908004629	1 probable transmembrane helix predicted for BMS1221 by TMHMM2.0 at aa 5-27
862908004630	HMMPfam hit to PF06537, Protein of unknown function DUF1111, score 1.8e-164
862908004631	PS00190 Cytochrome c family heme-binding site signature.
862908004632	PS00190 Cytochrome c family heme-binding site signature.
862908004633	fructose-bisphosphate aldolase; Provisional; Region: PRK09197
862908004634	Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the...; Region: FTBP_aldolase_II; cl17181
862908004635	active site
862908004636	intersubunit interface [polypeptide binding]; other site
862908004637	zinc binding site [ion binding]; other site
862908004638	Na+ binding site [ion binding]; other site
862908004639	HMMPfam hit to PF01116, Ketose-bisphosphate aldolase, class-II, score 1e-116
862908004640	pyruvate dehydrogenase E1 component, alpha subunit; Region: PDH_E1_alph_x; TIGR03181
862908004641	Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain...; Region: TPP_E1_PDC_ADC_BCADC; cd02000
862908004642	tetramer interface [polypeptide binding]; other site
862908004643	TPP-binding site [chemical binding]; other site
862908004644	heterodimer interface [polypeptide binding]; other site
862908004645	phosphorylation loop region [posttranslational modification]
862908004646	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]; Region: AcoB; COG0022
862908004647	Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes; Region: TPP_enzyme_PYR; cl11410
862908004648	PYR/PP interface [polypeptide binding]; other site
862908004649	dimer interface [polypeptide binding]; other site
862908004650	TPP binding site [chemical binding]; other site
862908004651	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
862908004652	HMMPfam hit to PF00676, Dehydrogenase, E1 component, score 7.2e-38
862908004653	HMMPfam hit to PF02779, Transketolase, central region, score 8.9e-28
862908004654	HMMPfam hit to PF02780, Transketolase, C terminal, score 1.3e-52
862908004655	Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins; Region: Cache_2; smart01049
862908004656	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
862908004657	dimer interface [polypeptide binding]; other site
862908004658	Methyl-accepting chemotaxis protein (MCP) signalling domain; Region: MCPsignal; pfam00015
862908004659	putative CheW interface [polypeptide binding]; other site
862908004660	HMMPfam hit to PF00015, Bacterial chemotaxis sensory transducer, score 2e-38
862908004661	Signal peptide predicted for BMS1224 by SignalP 2.0 HMM (Signal peptide probability 0.782) with cleavage site probability 0.456 between residues 28 and 29
862908004662	1 probable transmembrane helix predicted for BMS1224 by TMHMM2.0 at aa 9-28
862908004663	CHASE2 domain; Region: CHASE2; pfam05226
862908004664	Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]; Region: CyaA; COG2114
862908004665	cyclase homology domain; Region: CHD; cd07302
862908004666	nucleotidyl binding site; other site
862908004667	metal binding site [ion binding]; metal-binding site
862908004668	dimer interface [polypeptide binding]; other site
862908004669	HMMPfam hit to PF00211, Guanylate cyclase, score 4.9e-17
862908004670	4 probable transmembrane helices predicted for BMS1225 by TMHMM2.0 at aa 5-27, 357-376, 381-403 and 410-432
862908004671	HMMPfam hit to PF05226, CHASE2, score 1.1e-08
862908004672	Signal peptide predicted for BMS1225 by SignalP 2.0 HMM (Signal peptide probability 0.914) with cleavage site probability 0.381 between residues 27 and 28
862908004673	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908004674	binding surface
862908004675	Tetratricopeptide repeat; Region: TPR_16; pfam13432
862908004676	TPR motif; other site
862908004677	HMMPfam hit to PF07719, , score 0.012; PF07719, Tetratricopeptide repeat
862908004678	Signal peptide predicted for BMS1226 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.989 between residues 20 and 21
862908004679	FecR protein; Region: FecR; pfam04773
862908004680	Signal peptide predicted for BMS1227 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 between residues 23 and 24
862908004681	Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the...; Region: ArsC_ArsC; cd03034
862908004682	ArsC family; Region: ArsC; pfam03960
862908004683	catalytic residues [active]
862908004684	HMMPfam hit to PF03960, Arsenate reductase and related, score 4.1e-29
862908004685	Signal peptide predicted for BMS1230 by SignalP 2.0 HMM (Signal peptide probability 0.878) with cleavage site probability 0.527 between residues 19 and 20
862908004686	Domain of unknown function (DUF3943); Region: DUF3943; pfam13084
862908004687	Signal peptide predicted for BMS1231 by SignalP 2.0 HMM (Signal peptide probability 0.983) with cleavage site probability 0.604 between residues 17 and 18
862908004688	coproporphyrinogen III oxidase; Provisional; Region: PRK05330
862908004689	Coproporphyrinogen III oxidase; Region: Coprogen_oxidas; cl17752
862908004690	HMMPfam hit to PF01218, Coproporphyrinogen III oxidase, score 5.1e-95
862908004691	Signal peptide predicted for BMS1233 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.889 between residues 18 and 19
862908004692	Signal peptide predicted for BMS1234 by SignalP 2.0 HMM (Signal peptide probability 0.984) with cleavage site probability 0.978 between residues 16 and 17
862908004693	Signal peptide predicted for BMS1235 by SignalP 2.0 HMM (Signal peptide probability 0.965) with cleavage site probability 0.625 between residues 23 and 24
862908004694	Signal peptide predicted for BMS1236 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.511 between residues 28 and 29
862908004695	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908004696	Scaffold protein Nfu/NifU N terminal; Region: Nfu_N; pfam08712
862908004697	Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]; Region: COG0694
862908004698	HMMPfam hit to PF01106, Nitrogen-fixing NifU, C-terminal, score 5.2e-16
862908004699	Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520
862908004700	Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS...; Region: SufS_like; cd06453
862908004701	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
862908004702	catalytic residue [active]
862908004703	HMMPfam hit to PF00266, Aminotransferase, class V, score 1.1e-14
862908004704	PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site.
862908004705	FeS assembly protein SufD; Region: sufD; TIGR01981
862908004706	Uncharacterized protein family (UPF0051); Region: UPF0051; pfam01458
862908004707	HMMPfam hit to PF01458, SufBD, score 3.3e-41
862908004708	sulfate ABC transporter protein; Validated; Region: ycf16; CHL00131
862908004709	ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Region: ABC_FeS_Assembly; cd03217
862908004710	Walker A/P-loop; other site
862908004711	ATP binding site [chemical binding]; other site
862908004712	Q-loop/lid; other site
862908004713	ABC transporter signature motif; other site
862908004714	Walker B; other site
862908004715	D-loop; other site
862908004716	H-loop/switch region; other site
862908004717	HMMPfam hit to PF00005, ABC transporter, score 1e-31
862908004718	PS00211 ABC transporters family signature.
862908004719	PS00017 ATP/GTP-binding site motif A (P-loop).
862908004720	cysteine desulfurase activator complex subunit SufB; Provisional; Region: PRK11814
862908004721	putative ABC transporter; Region: ycf24; CHL00085
862908004722	HMMPfam hit to PF01458, SufBD, score 2.6e-134
862908004723	FeS assembly SUF system regulator, gammaproteobacterial; Region: suf_reg_Xantho; TIGR02944
862908004724	Transcriptional regulator; Region: Rrf2; pfam02082
862908004725	Transcriptional regulator; Region: Rrf2; cl17282
862908004726	Sterol desaturase [Lipid metabolism]; Region: ERG3; COG3000
862908004727	Fatty acid hydroxylase superfamily; Region: FA_hydroxylase; pfam04116
862908004728	HMMPfam hit to PF01598, Sterol desaturase, score 2e-05
862908004729	3 probable transmembrane helices predicted for BMS1245 by TMHMM2.0 at aa 5-22, 42-64 and 77-99
862908004730	Rhomboid family; Region: Rhomboid; pfam01694
862908004731	6 probable transmembrane helices predicted for BMS1248 by TMHMM2.0 at aa 72-94, 125-147, 160-182, 187-204, 224-257 and 272-291
862908004732	HMMPfam hit to PF01694, Rhomboid-like protein, score 6e-26
862908004733	Signal peptide predicted for BMS1249 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 between residues 20 and 21
862908004734	PS00017 ATP/GTP-binding site motif A (P-loop).
862908004735	PS00017 ATP/GTP-binding site motif A (P-loop).
862908004736	Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: ArgS; COG0018
862908004737	Arginyl tRNA synthetase N terminal domain; Region: Arg_tRNA_synt_N; pfam03485
862908004738	catalytic core domain of arginyl-tRNA synthetases; Region: ArgRS_core; cd00671
862908004739	active site
862908004740	HIGH motif; other site
862908004741	KMSK motif region; other site
862908004742	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
862908004743	tRNA binding surface [nucleotide binding]; other site
862908004744	anticodon binding site; other site
862908004745	HMMPfam hit to PF05746, Arginyl tRNA synthetase anticodon binding, score 6.5e-38
862908004746	HMMPfam hit to PF00750, Arginyl-tRNA synthetase, class Ic, score 1.4e-22
862908004747	HMMPfam hit to PF03485, Arginyl tRNA synthetase, N-terminal, score 4.2e-18
862908004748	Signal peptide predicted for BMS1251 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.916 between residues 33 and 34
862908004749	1 probable transmembrane helix predicted for BMS1251 by TMHMM2.0 at aa 13-35
862908004750	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
862908004751	Coenzyme A binding pocket [chemical binding]; other site
862908004752	Acetyltransferases [General function prediction only]; Region: RimI; COG0456
862908004753	HMMPfam hit to PF00583, GCN5-related N-acetyltransferase, score 1.3e-09
862908004754	Signal peptide predicted for BMS1253 by SignalP 2.0 HMM (Signal peptide probability 0.973) with cleavage site probability 0.922 between residues 20 and 21
862908004755	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908004756	TopoisomeraseII; Region: TOP2c; smart00433
862908004757	ATP binding site [chemical binding]; other site
862908004758	Mg2+ binding site [ion binding]; other site
862908004759	G-X-G motif; other site
862908004760	DNA gyrase B; Region: DNA_gyraseB; pfam00204
862908004761	ATP binding site [chemical binding]; other site
862908004762	TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands...; Region: TOPRIM_TopoIIA_like; cd01030
862908004763	active site
862908004764	putative metal-binding site [ion binding]; other site
862908004765	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
862908004766	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 5.2e-08
862908004767	HMMPfam hit to PF00204, DNA topoisomerase II, score 3.2e-09
862908004768	PS00177 DNA topoisomerase II signature.
862908004769	DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes...; Region: TOP4c; cl00148
862908004770	CAP-like domain; other site
862908004771	DNA gyrase/topoisomerase IV, subunit A; Region: DNA_topoisoIV; pfam00521
862908004772	active site
862908004773	primary dimer interface [polypeptide binding]; other site
862908004774	HMMPfam hit to PF00521, DNA gyrase/topoisomerase IV, subunit A, score 3.6e-23
862908004775	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
862908004776	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
862908004777	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
862908004778	IHF - DNA interface [nucleotide binding]; other site
862908004779	IHF dimer interface [polypeptide binding]; other site
862908004780	HMMPfam hit to PF00216, Histone-like bacterial DNA-binding protein, score 5.4e-40
862908004781	PS00045 Bacterial histone-like DNA-binding proteins signature.
862908004782	MerR HTH family regulatory protein; Region: MerR_1; pfam13411
862908004783	Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600
862908004784	DNA binding residues [nucleotide binding]
862908004785	Isoprenoid Biosynthesis enzymes, Class 1; Region: Isoprenoid_Biosyn_C1; cl00210
862908004786	substrate binding pocket [chemical binding]; other site
862908004787	substrate-Mg2+ binding site; other site
862908004788	aspartate-rich region 1; other site
862908004789	Isoprenoid Biosynthesis enzymes, Class 1; Region: Isoprenoid_Biosyn_C1; cl00210
862908004790	PS00017 ATP/GTP-binding site motif A (P-loop).
862908004791	HMMPfam hit to PF00348, Polyprenyl synthetase, score 4e-30
862908004792	PS00723 Polyprenyl synthetases signature 1.
862908004793	1 probable transmembrane helix predicted for BMS1260 by TMHMM2.0 at aa 26-48
862908004794	1 probable transmembrane helix predicted for BMS1261 by TMHMM2.0 at aa 48-70
862908004795	Type II secretion system (T2SS), protein L; Region: T2SL; pfam05134
862908004796	Cell division protein FtsA; Region: FtsA; pfam14450
862908004797	1 probable transmembrane helix predicted for BMS1262 by TMHMM2.0 at aa 368-387
862908004798	Signal peptide predicted for BMS1263 by SignalP 2.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.745 between residues 29 and 30
862908004799	Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulG; COG2165
862908004800	prepilin-type N-terminal cleavage/methylation domain; Region: IV_pilin_GFxxxE; TIGR02532
862908004801	Signal peptide predicted for BMS1264 by SignalP 2.0 HMM (Signal peptide probability 0.725) with cleavage site probability 0.258 between residues 43 and 44
862908004802	PS00409 Prokaryotic N-terminal methylation site.
862908004803	prepilin-type N-terminal cleavage/methylation domain; Region: IV_pilin_GFxxxE; TIGR02532
862908004804	Signal peptide predicted for BMS1265 by SignalP 2.0 HMM (Signal peptide probability 0.788) with cleavage site probability 0.671 between residues 36 and 37
862908004805	1 probable transmembrane helix predicted for BMS1266 by TMHMM2.0 at aa 12-34
862908004806	PS00409 Prokaryotic N-terminal methylation site.
862908004807	Type II secretion system (T2SS), protein G; Region: T2SG; pfam08334
862908004808	Signal peptide predicted for BMS1267 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.344 between residues 41 and 42
862908004809	1 probable transmembrane helix predicted for BMS1267 by TMHMM2.0 at aa 13-35
862908004810	PS00409 Prokaryotic N-terminal methylation site.
862908004811	type II secretion system protein F; Region: GspF; TIGR02120
862908004812	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
862908004813	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
862908004814	HMMPfam hit to PF00482, Bacterial type II secretion system protein, score 3.2e-22
862908004815	3 probable transmembrane helices predicted for BMS1268 by TMHMM2.0 at aa 171-193, 214-236 and 373-395
862908004816	HMMPfam hit to PF00482, Bacterial type II secretion system protein, score 4.1e-21
862908004817	Type II secretion system (T2SS), protein E, N-terminal domain; Region: T2SE_Nter; pfam05157
862908004818	type II secretion system protein E; Region: type_II_gspE; TIGR02533
862908004819	PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129
862908004820	Walker A motif; other site
862908004821	ATP binding site [chemical binding]; other site
862908004822	Walker B motif; other site
862908004823	HMMPfam hit to PF00437, Bacterial type II secretion system protein E, score 5.9e-113
862908004824	PS00017 ATP/GTP-binding site motif A (P-loop).
862908004825	HMMPfam hit to PF05157, General secretory system II, protein E, N-terminal, score 1.9e-08
862908004826	type II secretion system protein D; Region: type_II_gspD; TIGR02517
862908004827	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
862908004828	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
862908004829	Bacterial type II/III secretion system short domain; Region: Secretin_N; pfam03958
862908004830	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
862908004831	HMMPfam hit to PF00263, Bacterial type II and III secretion system protein, score 2.9e-52
862908004832	PS00875 Bacterial type II secretion system protein D signature.
862908004833	HMMPfam hit to PF03958, NolW-like, score 7.2e-14
862908004834	HMMPfam hit to PF03958, NolW-like, score 5.7e-06
862908004835	HMMPfam hit to PF03958, NolW-like, score 4.1e-07
862908004836	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
862908004837	protein binding site [polypeptide binding]; other site
862908004838	HMMPfam hit to PF00595, PDZ/DHR/GLGF, score 0.078
862908004839	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
862908004840	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
862908004841	active site
862908004842	HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, N-terminal, score 3e-20
862908004843	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, central region, score 8.4e-43
862908004844	PS00072 Acyl-CoA dehydrogenases signature 1.
862908004845	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal, score 2e-57
862908004846	Family description; Region: VCBS; pfam13517
862908004847	Family description; Region: VCBS; pfam13517
862908004848	Family description; Region: VCBS; pfam13517
862908004849	Family description; Region: VCBS; pfam13517
862908004850	ASPIC and UnbV; Region: UnbV_ASPIC; pfam07593
862908004851	Signal peptide predicted for BMS1273 by SignalP 2.0 HMM (Signal peptide probability 0.612) with cleavage site probability 0.388 between residues 20 and 21
862908004852	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908004853	HMMPfam hit to PF01839, Integrins alpha chain, score 0.038
862908004854	RNA polymerase-binding protein DksA; Region: dksA; TIGR02420
862908004855	HMMPfam hit to PF01258, Zn-finger, prokaryotic DksA/TraR C4 type, score 2.3e-10
862908004856	Signal peptide predicted for BMS1277 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 between residues 18 and 19
862908004857	heat shock protein 90; Provisional; Region: PRK05218
862908004858	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908004859	ATP binding site [chemical binding]; other site
862908004860	Mg2+ binding site [ion binding]; other site
862908004861	G-X-G motif; other site
862908004862	HMMPfam hit to PF00183, Heat shock protein Hsp90, score 4.2e-11
862908004863	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 0.00022
862908004864	Asparaginase; Region: Asparaginase; pfam00710
862908004865	active site
862908004866	5 probable transmembrane helices predicted for BMS1280 by TMHMM2.0 at aa 21-36, 51-73, 93-115, 142-164 and 176-198
862908004867	Signal peptide predicted for BMS1281 by SignalP 2.0 HMM (Signal peptide probability 0.929) with cleavage site probability 0.767 between residues 23 and 24
862908004868	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908004869	Signal peptide predicted for BMS1282 by SignalP 2.0 HMM (Signal peptide probability 0.947) with cleavage site probability 0.944 between residues 14 and 15
862908004870	Methylmalonyl-CoA epimerase (MMCE); Region: MMCE; cd07249
862908004871	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
862908004872	dimer interface [polypeptide binding]; other site
862908004873	substrate binding site [chemical binding]; other site
862908004874	metal binding site [ion binding]; metal-binding site
862908004875	HMMPfam hit to PF00903, Glyoxalase/bleomycin resistance protein/dioxygenase, score 2.9e-15
862908004876	Membrane associated serine protease [Amino acid transport and metabolism]; Region: COG0705
862908004877	Signal peptide predicted for BMS1284 by SignalP 2.0 HMM (Signal peptide probability 0.974) with cleavage site probability 0.473 between residues 34 and 35
862908004878	6 probable transmembrane helices predicted for BMS1284 by TMHMM2.0 at aa 20-42, 62-84, 96-118, 123-145, 152-174 and 184-203
862908004879	HMMPfam hit to PF01694, Rhomboid-like protein, score 2e-08
862908004880	Flagellar basal body-associated protein FliL; Region: FliL; pfam03748
862908004881	HMMPfam hit to PF03748, Flagellar basal body-associated protein FliL, score 1.8e-08
862908004882	1 probable transmembrane helix predicted for BMS1286 by TMHMM2.0 at aa 10-29
862908004883	Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad...; Region: Tryp_SPc; cl00149
862908004884	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]; Region: DegQ; COG0265
862908004885	Signal peptide predicted for BMS1287 by SignalP 2.0 HMM (Signal peptide probability 0.957) with cleavage site probability 0.622 between residues 24 and 25
862908004886	HMMPfam hit to PF00089, Peptidase S1, chymotrypsin, score 0.0004
862908004887	PS00134 Serine proteases, trypsin family, histidine active site.
862908004888	PS00673 Serine proteases, V8 family, serine active site.
862908004889	PS00017 ATP/GTP-binding site motif A (P-loop).
862908004890	Signal peptide predicted for BMS1289 by SignalP 2.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.491 between residues 21 and 22
862908004891	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
862908004892	PLD-like domain; Region: PLDc_2; pfam13091
862908004893	putative active site [active]
862908004894	catalytic site [active]
862908004895	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
862908004896	PLD-like domain; Region: PLDc_2; pfam13091
862908004897	putative active site [active]
862908004898	catalytic site [active]
862908004899	HMMPfam hit to PF00614, Phospholipase D/Transphosphatidylase, score 0.0071
862908004900	HMMPfam hit to PF00614, Phospholipase D/Transphosphatidylase, score 0.025
862908004901	lysozyme_like domain.  This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases; Region: lysozyme_like; cl00222
862908004902	Signal peptide predicted for BMS1291 by SignalP 2.0 HMM (Signal peptide probability 0.923) with cleavage site probability 0.888 between residues 18 and 19
862908004903	PS00017 ATP/GTP-binding site motif A (P-loop).
862908004904	Signal peptide predicted for BMS1292 by SignalP 2.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.961 between residues 18 and 19
862908004905	Alanine dehydrogenase [Amino acid transport and metabolism]; Region: Ald; COG0686
862908004906	Alanine dehydrogenase NAD-binding and catalytic domains; Region: L-AlaDH; cd05305
862908004907	hexamer interface [polypeptide binding]; other site
862908004908	ligand binding site [chemical binding]; other site
862908004909	putative active site [active]
862908004910	NAD(P) binding site [chemical binding]; other site
862908004911	HMMPfam hit to PF01262, Alanine dehydrogenase/PNT, C-terminal, score 2.1e-94
862908004912	HMMPfam hit to PF05222, Alanine dehydrogenase/PNT, N-terminal, score 5e-70
862908004913	putative hydrolase; Provisional; Region: PRK02113
862908004914	Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]; Region: PhnP; COG1235
862908004915	HMMPfam hit to PF00753, Beta-lactamase-like, score 4.2e-05
862908004916	Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612
862908004917	Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675
862908004918	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
862908004919	Signal peptide predicted for BMS1295 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.846 between residues 22 and 23
862908004920	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908004921	HMMPfam hit to PF00675, Insulinase-like, score 1.5e-22
862908004922	HMMPfam hit to PF05193, Peptidase M16, C-terminal, score 1.9e-22
862908004923	Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612
862908004924	Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675
862908004925	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
862908004926	Signal peptide predicted for BMS1296 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.514 between residues 23 and 24
862908004927	HMMPfam hit to PF00675, Insulinase-like, score 0.0002
862908004928	HMMPfam hit to PF05193, Peptidase M16, C-terminal, score 1.3e-12
862908004929	Polymer-forming cytoskeletal; Region: Bactofilin; pfam04519
862908004930	HMMPfam hit to PF04519, Protein of unknown function DUF583, score 7.1e-19
862908004931	1 probable transmembrane helix predicted for BMS1298 by TMHMM2.0 at aa 32-54
862908004932	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
862908004933	Signal peptide predicted for BMS1299 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.992 between residues 20 and 21
862908004934	AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]; Region: MDN1; COG5271
862908004935	Transmembrane protein; Region: Macoilin; pfam09726
862908004936	PS00017 ATP/GTP-binding site motif A (P-loop).
862908004937	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
862908004938	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
862908004939	metal binding site [ion binding]; metal-binding site
862908004940	active site
862908004941	I-site; other site
862908004942	HMMPfam hit to PF00990, GGDEF, score 2.9e-47
862908004943	Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain; Region: MPP_YbbF-LpxH; cd07398
862908004944	putative active site [active]
862908004945	putative metal binding site [ion binding]; other site
862908004946	amino acid transporter; Region: 2A0306; TIGR00909
862908004947	Spore germination protein; Region: Spore_permease; cl17796
862908004948	Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which  binds to Adenosine nucleotide; Region: AANH_like; cl00292
862908004949	Ligand Binding Site [chemical binding]; other site
862908004950	HMMPfam hit to PF00324, Amino acid permease-associated region, score 1.9e-36
862908004951	11 probable transmembrane helices predicted for BMS1303 by TMHMM2.0 at aa 61-83, 87-109, 145-167, 172-191, 198-220, 235-257, 270-292, 316-338, 365-384, 394-413 and 434-468
862908004952	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908004953	active site
862908004954	phosphorylation site [posttranslational modification]
862908004955	dimerization interface [polypeptide binding]; other site
862908004956	Ankyrin repeats (many copies); Region: Ank_4; pfam13637
862908004957	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
862908004958	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
862908004959	HMMPfam hit to PF00072, Response regulator receiver, score 3.3e-06
862908004960	HMMPfam hit to PF00023, Ankyrin, score 1.3e-06
862908004961	HMMPfam hit to PF00023, Ankyrin, score 3.9e-05
862908004962	HMMPfam hit to PF00023, Ankyrin, score 0.58
862908004963	FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784
862908004964	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908004965	active site
862908004966	phosphorylation site [posttranslational modification]
862908004967	intermolecular recognition site; other site
862908004968	dimerization interface [polypeptide binding]; other site
862908004969	HMMPfam hit to PF00072, Response regulator receiver, score 3.9e-05
862908004970	Response regulator receiver domain; Region: Response_reg; pfam00072
862908004971	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908004972	active site
862908004973	phosphorylation site [posttranslational modification]
862908004974	intermolecular recognition site; other site
862908004975	dimerization interface [polypeptide binding]; other site
862908004976	HMMPfam hit to PF00072, Response regulator receiver, score 2.1e-17
862908004977	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908004978	Response regulator receiver domain; Region: Response_reg; pfam00072
862908004979	active site
862908004980	phosphorylation site [posttranslational modification]
862908004981	intermolecular recognition site; other site
862908004982	dimerization interface [polypeptide binding]; other site
862908004983	HMMPfam hit to PF00072, Response regulator receiver, score 4.6e-13
862908004984	Hpt domain; Region: Hpt; pfam01627
862908004985	HMMPfam hit to PF01627, Hpt, score 4.2e-05
862908004986	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cl17736
862908004987	intermolecular recognition site; other site
862908004988	Response regulator receiver domain; Region: Response_reg; pfam00072
862908004989	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908004990	active site
862908004991	phosphorylation site [posttranslational modification]
862908004992	intermolecular recognition site; other site
862908004993	dimerization interface [polypeptide binding]; other site
862908004994	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908004995	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908004996	dimer interface [polypeptide binding]; other site
862908004997	phosphorylation site [posttranslational modification]
862908004998	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908004999	ATP binding site [chemical binding]; other site
862908005000	Mg2+ binding site [ion binding]; other site
862908005001	G-X-G motif; other site
862908005002	HMMPfam hit to PF00072, Response regulator receiver, score 2.8e-21
862908005003	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 1.3e-15
862908005004	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 1.2e-33
862908005005	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908005006	active site
862908005007	phosphorylation site [posttranslational modification]
862908005008	intermolecular recognition site; other site
862908005009	dimerization interface [polypeptide binding]; other site
862908005010	HMMPfam hit to PF00072, Response regulator receiver, score 4e-13
862908005011	Violaxanthin de-epoxidase (VDE); Region: VDE; cl06253
862908005012	NAD synthetase; Provisional; Region: PRK13981
862908005013	Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases); Region: GAT_Gln-NAD-synth; cd07570
862908005014	multimer interface [polypeptide binding]; other site
862908005015	active site
862908005016	catalytic triad [active]
862908005017	protein interface 1 [polypeptide binding]; other site
862908005018	NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD...; Region: NAD_synthase; cd00553
862908005019	homodimer interface [polypeptide binding]; other site
862908005020	NAD binding pocket [chemical binding]; other site
862908005021	ATP binding pocket [chemical binding]; other site
862908005022	Mg binding site [ion binding]; other site
862908005023	active-site loop [active]
862908005024	HMMPfam hit to PF02540, NAD+ synthase, score 6.3e-59
862908005025	HMMPfam hit to PF00795, Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, score 3.7e-05
862908005026	tRNA (uracil-5-)-methyltransferase Gid; Reviewed; Region: PRK05335
862908005027	Glucose inhibited division protein A; Region: GIDA; pfam01134
862908005028	HMMPfam hit to PF01134, Glucose-inhibited division protein A, score 5.4e-70
862908005029	EamA-like transporter family; Region: EamA; cl17759
862908005030	Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950
862908005031	8 probable transmembrane helices predicted for BMS1314 by TMHMM2.0 at aa 3-25, 29-51, 64-83, 93-115, 122-144, 159-180, 193-210 and 220-242
862908005032	HMMPfam hit to PF00892, Protein of unknown function DUF6, score 1.2e-09
862908005033	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
862908005034	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908005035	NAD(P) binding site [chemical binding]; other site
862908005036	active site
862908005037	HMMPfam hit to PF01370, NAD-dependent epimerase/dehydratase, score 2.3e-31
862908005038	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
862908005039	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
862908005040	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
862908005041	substrate binding pocket [chemical binding]; other site
862908005042	membrane-bound complex binding site; other site
862908005043	hinge residues; other site
862908005044	Signal peptide predicted for BMS1317 by SignalP 2.0 HMM (Signal peptide probability 0.887) with cleavage site probability 0.875 between residues 32 and 33
862908005045	1 probable transmembrane helix predicted for BMS1317 by TMHMM2.0 at aa 13-35
862908005046	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
862908005047	2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy_2; pfam13532
862908005048	HMMPfam hit to PF03171, 2OG-Fe(II) oxygenase superfamily, score 0.0078
862908005049	Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA; Region: HTH_MlrA-CarA; cd01104
862908005050	MerR HTH family regulatory protein; Region: MerR_1; pfam13411
862908005051	DNA binding residues [nucleotide binding]
862908005052	HMMPfam hit to PF00376, Bacterial regulatory protein, MerR, score 7e-07
862908005053	Signal peptide predicted for BMS1321 by SignalP 2.0 HMM (Signal peptide probability 0.664) with cleavage site probability 0.617 between residues 21 and 22
862908005054	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908005055	DTW domain; Region: DTW; cl01221
862908005056	HMMPfam hit to PF03942, DTW, score 1.8e-23
862908005057	Signal peptide predicted for BMS1324 by SignalP 2.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.516 between residues 23 and 24
862908005058	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908005059	Endonuclease I; Region: Endonuclease_1; pfam04231
862908005060	HMMPfam hit to PF04231, Endonuclease I, score 5.1e-16
862908005061	3-oxoacyl-(acyl carrier protein) synthase III; Reviewed; Region: PRK09352
862908005062	Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl...; Region: KAS_III; cd00830
862908005063	dimer interface [polypeptide binding]; other site
862908005064	active site
862908005065	CoA binding pocket [chemical binding]; other site
862908005066	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
862908005067	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
862908005068	active site
862908005069	catalytic tetrad [active]
862908005070	HMMPfam hit to PF00248, Aldo/keto reductase, score 5.3e-39
862908005071	4 probable transmembrane helices predicted for BMS1330 by TMHMM2.0 at aa 47-69, 74-96, 162-184 and 199-221
862908005072	Peptidase inhibitor I9; Region: Inhibitor_I9; pfam05922
862908005073	Peptidase S8 family domain in Subtilisin-like proteins; Region: Peptidases_S8_Subtilisin_like; cd07473
862908005074	catalytic triad [active]
862908005075	putative active site [active]
862908005076	Signal peptide predicted for BMS1331 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.986 between residues 18 and 19
862908005077	HMMPfam hit to PF00082, Peptidase S8 and S53, subtilisin, kexin, sedolisin, score 5.1e-66
862908005078	PS00136 Serine proteases, subtilase family, aspartic acid active site.
862908005079	PS00137 Serine proteases, subtilase family, histidine active site.
862908005080	PS00138 Serine proteases, subtilase family, serine active site.
862908005081	1 probable transmembrane helix predicted for BMS1332 by TMHMM2.0 at aa 2-24
862908005082	Signal peptide predicted for BMS1332 by SignalP 2.0 HMM (Signal peptide probability 0.641) with cleavage site probability 0.617 between residues 20 and 21
862908005083	Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct...; Region: Trunc_globin; cd00454
862908005084	apolar tunnel; other site
862908005085	heme binding site [chemical binding]; other site
862908005086	dimerization interface [polypeptide binding]; other site
862908005087	HMMPfam hit to PF01152, Protozoan/cyanobacterial globin, score 1.3e-36
862908005088	Domain of unknown function (DUF309); Region: DUF309; pfam03745
862908005089	DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127
862908005090	active site
862908005091	substrate binding site [chemical binding]; other site
862908005092	catalytic site [active]
862908005093	HMMPfam hit to PF00929, Exonuclease, score 1.2e-05
862908005094	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908005095	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908005096	dimer interface [polypeptide binding]; other site
862908005097	phosphorylation site [posttranslational modification]
862908005098	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908005099	ATP binding site [chemical binding]; other site
862908005100	Mg2+ binding site [ion binding]; other site
862908005101	G-X-G motif; other site
862908005102	1 probable transmembrane helix predicted for BMS1337 by TMHMM2.0 at aa 257-276
862908005103	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 3.9e-07
862908005104	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 6.6e-15
862908005105	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
862908005106	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908005107	active site
862908005108	phosphorylation site [posttranslational modification]
862908005109	intermolecular recognition site; other site
862908005110	dimerization interface [polypeptide binding]; other site
862908005111	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
862908005112	DNA binding site [nucleotide binding]
862908005113	HMMPfam hit to PF00072, Response regulator receiver, score 1.4e-29
862908005114	HMMPfam hit to PF00486, Transcriptional regulatory protein, C-terminal, score 1.3e-23
862908005115	1 probable transmembrane helix predicted for BMS1339 by TMHMM2.0 at aa 4-21
862908005116	2 probable transmembrane helices predicted for BMS1340 by TMHMM2.0 at aa 33-55 and 67-89
862908005117	Endonuclease I; Region: Endonuclease_1; cl01003
862908005118	HMMPfam hit to PF04231, Endonuclease I, score 2.4e-14
862908005119	Signal peptide predicted for BMS1341 by SignalP 2.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.494 between residues 22 and 23
862908005120	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908005121	Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM; Region: MATE_NorM_like; cd13131
862908005122	putative efflux protein, MATE family; Region: matE; TIGR00797
862908005123	cation binding site [ion binding]; other site
862908005124	12 probable transmembrane helices predicted for BMS1342 by TMHMM2.0 at aa 16-38, 53-75, 96-118, 128-147, 159-181, 191-213, 234-256, 271-293, 306-328, 348-370, 382-401 and 411-433
862908005125	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908005126	HMMPfam hit to PF01554, Multi antimicrobial extrusion protein MatE, score 2.6e-34
862908005127	Predicted exporters of the RND superfamily [General function prediction only]; Region: COG1033
862908005128	Protein export membrane protein; Region: SecD_SecF; cl14618
862908005129	12 probable transmembrane helices predicted for BMS1343 by TMHMM2.0 at aa 12-34, 223-245, 250-272, 277-299, 320-342, 352-374, 404-423, 601-623, 630-652, 662-684, 704-726 and 736-758
862908005130	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908005131	PilZ domain; Region: PilZ; pfam07238
862908005132	4 probable transmembrane helices predicted for BMS1344 by TMHMM2.0 at aa 7-29, 39-61, 68-88 and 93-115
862908005133	Signal peptide predicted for BMS1344 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.631 between residues 21 and 22
862908005134	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
862908005135	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
862908005136	N-acetyl-D-glucosamine binding site [chemical binding]; other site
862908005137	catalytic residue [active]
862908005138	Signal peptide predicted for BMS1345 by SignalP 2.0 HMM (Signal peptide probability 0.900) with cleavage site probability 0.749 between residues 29 and 30
862908005139	MoxR-like ATPases [General function prediction only]; Region: COG0714
862908005140	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908005141	Walker A motif; other site
862908005142	ATP binding site [chemical binding]; other site
862908005143	Walker B motif; other site
862908005144	arginine finger; other site
862908005145	HMMPfam hit to PF07726, , score 1e-70
862908005146	Protein of unknown function DUF58; Region: DUF58; pfam01882
862908005147	Signal peptide predicted for BMS1348 by SignalP 2.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.597 between residues 34 and 35
862908005148	2 probable transmembrane helices predicted for BMS1348 by TMHMM2.0 at aa 13-35 and 39-61
862908005149	HMMPfam hit to PF01882, Protein of unknown function DUF58, score 4.6e-07
862908005150	Domain of unknown function (DUF3488); Region: DUF3488; pfam11992
862908005151	Transglutaminase-like superfamily; Region: Transglut_core; pfam01841
862908005152	Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]; Region: COG1305
862908005153	7 probable transmembrane helices predicted for BMS1349 by TMHMM2.0 at aa 15-46, 53-70, 75-97, 104-121, 126-148, 161-180 and 546-563
862908005154	HMMPfam hit to PF01841, Transglutaminase-like, score 5.6e-13
862908005155	Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity; Region: Lysophospholipase_L1_like; cd01822
862908005156	active site
862908005157	catalytic triad [active]
862908005158	oxyanion hole [active]
862908005159	switch loop; other site
862908005160	Signal peptide predicted for BMS1350 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.958 between residues 18 and 19
862908005161	HMMPfam hit to PF00657, Lipolytic enzyme, G-D-S-L, score 2.5e-22
862908005162	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
862908005163	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
862908005164	Walker A/P-loop; other site
862908005165	ATP binding site [chemical binding]; other site
862908005166	Q-loop/lid; other site
862908005167	ABC transporter signature motif; other site
862908005168	Walker B; other site
862908005169	D-loop; other site
862908005170	H-loop/switch region; other site
862908005171	HMMPfam hit to PF00005, ABC transporter, score 1.2e-53
862908005172	PS00017 ATP/GTP-binding site motif A (P-loop).
862908005173	PS00211 ABC transporters family signature.
862908005174	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
862908005175	FtsX-like permease family; Region: FtsX; pfam02687
862908005176	Signal peptide predicted for BMS1352 by SignalP 2.0 HMM (Signal peptide probability 0.896) with cleavage site probability 0.442 between residues 42 and 43
862908005177	10 probable transmembrane helices predicted for BMS1352 by TMHMM2.0 at aa 13-35, 249-271, 291-313, 343-365, 386-408, 412-431, 458-480, 707-729, 761-783 and 793-815
862908005178	HMMPfam hit to PF02687, Protein of unknown function DUF214, score 2e-05
862908005179	HMMPfam hit to PF02687, Protein of unknown function DUF214, score 2.8e-15
862908005180	Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057
862908005181	metal ion-dependent adhesion site (MIDAS); other site
862908005182	1 probable transmembrane helix predicted for BMS1353 by TMHMM2.0 at aa 7-29
862908005183	MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568
862908005184	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel, score 0.00024
862908005185	4 probable transmembrane helices predicted for BMS1354 by TMHMM2.0 at aa 13-32, 47-66, 163-185 and 200-222
862908005186	SNF2 family N-terminal domain; Region: SNF2_N; pfam00176
862908005187	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
862908005188	ATP binding site [chemical binding]; other site
862908005189	putative Mg++ binding site [ion binding]; other site
862908005190	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
862908005191	nucleotide binding region [chemical binding]; other site
862908005192	ATP-binding site [chemical binding]; other site
862908005193	HMMPfam hit to PF00271, Helicase, C-terminal, score 1.4e-19
862908005194	HMMPfam hit to PF00176, SNF2-related, score 4.9e-77
862908005195	HMMPfam hit to PF04434, SWIM Zn-finger, score 0.02
862908005196	Brown fat-inducible thioesterase (BFIT).  Brain acyl-CoA hydrolase (BACH).  These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis; Region: BFIT_BACH; cd03442
862908005197	HMMPfam hit to PF03061, Thioesterase superfamily, score 3.2e-21
862908005198	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
862908005199	gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Region: galliderm_ABC; TIGR03740
862908005200	Walker A/P-loop; other site
862908005201	ATP binding site [chemical binding]; other site
862908005202	Q-loop/lid; other site
862908005203	ABC transporter signature motif; other site
862908005204	Walker B; other site
862908005205	D-loop; other site
862908005206	H-loop/switch region; other site
862908005207	HMMPfam hit to PF00005, ABC transporter, score 3.8e-41
862908005208	PS00017 ATP/GTP-binding site motif A (P-loop).
862908005209	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
862908005210	6 probable transmembrane helices predicted for BMS1358 by TMHMM2.0 at aa 22-44, 59-81, 110-132, 147-169, 176-198 and 242-264
862908005211	Protein of unknown function (DUF2914); Region: DUF2914; pfam11141
862908005212	7 probable transmembrane helices predicted for BMS1360 by TMHMM2.0 at aa 13-35, 40-59, 79-96, 100-117, 129-151, 155-174 and 187-209
862908005213	Outer membrane protein V [Cell envelope biogenesis, outer membrane]; Region: OmpV; COG3713
862908005214	HMMPfam hit to PF06629, MltA-interacting MipA, score 1.3e-07
862908005215	Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]; Region: UgpQ; COG0584
862908005216	Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily; Region: PI-PLCc_GDPD_SF; cl14615
862908005217	active site
862908005218	catalytic site [active]
862908005219	HMMPfam hit to PF03009, Glycerophosphoryl diester phosphodiesterase, score 1.2e-36
862908005220	Predicted membrane protein (DUF2238); Region: DUF2238; cl01464
862908005221	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908005222	dimer interface [polypeptide binding]; other site
862908005223	phosphorylation site [posttranslational modification]
862908005224	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908005225	ATP binding site [chemical binding]; other site
862908005226	Mg2+ binding site [ion binding]; other site
862908005227	G-X-G motif; other site
862908005228	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 3.2e-23
862908005229	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 7.8e-09
862908005230	6 probable transmembrane helices predicted for BMS1365 by TMHMM2.0 at aa 20-42, 47-65, 70-87, 92-114, 121-140 and 155-172
862908005231	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
862908005232	acetyl-CoA acetyltransferase; Provisional; Region: PRK09268
862908005233	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
862908005234	dimer interface [polypeptide binding]; other site
862908005235	active site
862908005236	HMMPfam hit to PF00108, Thiolase, score 6.8e-48
862908005237	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
862908005238	HMMPfam hit to PF02803, Thiolase, score 2e-41
862908005239	PS00737 Thiolases signature 2.
862908005240	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair; cl15354
862908005241	FOG: CBS domain [General function prediction only]; Region: COG0517
862908005242	FOG: CBS domain [General function prediction only]; Region: COG0517
862908005243	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair; cd02205
862908005244	HMMPfam hit to PF00571, CBS, score 0.0015
862908005245	HMMPfam hit to PF00571, CBS, score 0.51
862908005246	HMMPfam hit to PF00571, CBS, score 3.6e-07
862908005247	HMMPfam hit to PF00571, CBS, score 0.054
862908005248	2 probable transmembrane helices predicted for BMS1369 by TMHMM2.0 at aa 13-35 and 50-67
862908005249	Superfamily II DNA helicase [DNA replication, recombination, and repair]; Region: RecQ; COG0514
862908005250	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
862908005251	ATP binding site [chemical binding]; other site
862908005252	putative Mg++ binding site [ion binding]; other site
862908005253	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
862908005254	nucleotide binding region [chemical binding]; other site
862908005255	ATP-binding site [chemical binding]; other site
862908005256	RQC domain; Region: RQC; cl09632
862908005257	HRDC domain; Region: HRDC; pfam00570
862908005258	HMMPfam hit to PF00270, DEAD/DEAH box helicase, N-terminal, score 2.1e-28
862908005259	HMMPfam hit to PF00271, Helicase, C-terminal, score 2.3e-27
862908005260	HMMPfam hit to PF00570, HRDC, score 3.8e-15
862908005261	1 probable transmembrane helix predicted for BMS1371 by TMHMM2.0 at aa 7-29
862908005262	NAD-dependent deacetylase; Provisional; Region: PRK00481
862908005263	SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which...; Region: SIRT5_Af1_CobB; cd01412
862908005264	NAD+ binding site [chemical binding]; other site
862908005265	substrate binding site [chemical binding]; other site
862908005266	Zn binding site [ion binding]; other site
862908005267	HMMPfam hit to PF02146, Silent information regulator protein Sir2, score 3.6e-58
862908005268	3 probable transmembrane helices predicted for BMS1374 by TMHMM2.0 at aa 36-58, 68-87 and 94-116
862908005269	Signal peptide predicted for BMS1375 by SignalP 2.0 HMM (Signal peptide probability 0.932) with cleavage site probability 0.440 between residues 22 and 23
862908005270	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908005271	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cl17189
862908005272	C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571
862908005273	DnaA box-binding interface [nucleotide binding]; other site
862908005274	HMMPfam hit to PF00308, Bacterial chromosomal replication initiator protein, DnaA, score 2e-15
862908005275	PS00041 Bacterial regulatory proteins, araC family signature.
862908005276	PS01008 DnaA protein signature.
862908005277	FOG: FHA domain [Signal transduction mechanisms]; Region: COG1716
862908005278	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
862908005279	phosphopeptide binding site; other site
862908005280	HMMPfam hit to PF00498, Forkhead-associated, score 8.9e-12
862908005281	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908005282	binding surface
862908005283	TPR motif; other site
862908005284	HMMPfam hit to PF07719, , score 0.00013; PF07719, Tetratricopeptide repeat
862908005285	Signal peptide predicted for BMS1378 by SignalP 2.0 HMM (Signal peptide probability 0.969) with cleavage site probability 0.560 between residues 19 and 20
862908005286	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908005287	Tetratricopeptide repeat; Region: TPR_16; pfam13432
862908005288	HMMPfam hit to PF07719, , score 0.4; PF07719, Tetratricopeptide repeat
862908005289	HMMPfam hit to PF07719, , score 1; PF07719, Tetratricopeptide repeat
862908005290	Signal peptide predicted for BMS1379 by SignalP 2.0 HMM (Signal peptide probability 0.984) with cleavage site probability 0.974 between residues 24 and 25
862908005291	1 probable transmembrane helix predicted for BMS1380 by TMHMM2.0 at aa 20-37
862908005292	Biopolymer transport protein ExbD/TolR; Region: ExbD; pfam02472
862908005293	HMMPfam hit to PF02472, Biopolymer transport protein ExbD/TolR, score 0.00013
862908005294	1 probable transmembrane helix predicted for BMS1381 by TMHMM2.0 at aa 13-35
862908005295	Biopolymer transport proteins [Intracellular trafficking and secretion]; Region: TolQ; COG0811
862908005296	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel, score 1.4e-10
862908005297	3 probable transmembrane helices predicted for BMS1382 by TMHMM2.0 at aa 20-42, 125-147 and 172-194
862908005298	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
862908005299	Signal peptide predicted for BMS1383 by SignalP 2.0 HMM (Signal peptide probability 0.947) with cleavage site probability 0.947 between residues 15 and 16
862908005300	HMMPfam hit to PF07719, , score 0.11; PF07719, Tetratricopeptide repeat
862908005301	Signal peptide predicted for BMS1384 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.791 between residues 17 and 18
862908005302	Signal peptide predicted for BMS1385 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 27 and 28
862908005303	Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cl00057
862908005304	metal ion-dependent adhesion site (MIDAS); other site
862908005305	Alpha/beta hydrolase family; Region: Abhydrolase_5; pfam12695
862908005306	Dolichol kinase [Lipid metabolism]; Region: SEC59; COG0170
862908005307	5 probable transmembrane helices predicted for BMS1389 by TMHMM2.0 at aa 47-69, 109-131, 152-174, 179-201 and 206-228
862908005308	HMMPfam hit to PF01148, Phosphatidate cytidylyltransferase, score 2.6e-08
862908005309	Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; cl10482
862908005310	Sodium/hydrogen exchanger family; Region: Na_H_Exchanger; pfam00999
862908005311	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair; cl15354
862908005312	FOG: CBS domain [General function prediction only]; Region: COG0517
862908005313	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair; cd02205
862908005314	HMMPfam hit to PF00571, CBS, score 6.1e-08
862908005315	HMMPfam hit to PF00571, CBS, score 3.9e-06
862908005316	10 probable transmembrane helices predicted for BMS1390 by TMHMM2.0 at aa 7-29, 60-82, 102-121, 131-153, 166-188, 208-230, 287-306, 316-338, 350-372 and 382-404
862908005317	1 probable transmembrane helix predicted for BMS1391 by TMHMM2.0 at aa 5-24
862908005318	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908005319	Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG0702
862908005320	NAD(P) binding site [chemical binding]; other site
862908005321	active site
862908005322	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
862908005323	catalytic residues [active]
862908005324	1 probable transmembrane helix predicted for BMS1394 by TMHMM2.0 at aa 121-139
862908005325	HMMPfam hit to PF00085, Thioredoxin-related, score 3.3e-09
862908005326	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
862908005327	Aldo/keto reductase family; Region: Aldo_ket_red; pfam00248
862908005328	active site
862908005329	catalytic tetrad [active]
862908005330	HMMPfam hit to PF00248, Aldo/keto reductase, score 1.6e-56
862908005331	Family description; Region: DsbD_2; pfam13386
862908005332	6 probable transmembrane helices predicted for BMS1397 by TMHMM2.0 at aa 20-42, 55-74, 78-100, 138-160, 170-192 and 205-227
862908005333	4Fe-4S binding domain; Region: Fer4_5; pfam12801
862908005334	4Fe-4S dicluster domain; Region: Fer4_18; pfam13746
862908005335	5 probable transmembrane helices predicted for BMS1398 by TMHMM2.0 at aa 41-58, 85-107, 161-180, 195-214 and 328-350
862908005336	HMMPfam hit to PF00037, 4Fe-4S ferredoxin, iron-sulfur binding, score 0.0029
862908005337	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
862908005338	cytochrome c oxidase, cbb3-type, subunit III; Region: ccoP; TIGR00782
862908005339	Cytochrome C oxidase, cbb3-type, subunit III; Region: Cytochrome_CBB3; pfam13442
862908005340	HMMPfam hit to PF00034, Cytochrome c, class I, score 1.2e-06
862908005341	putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional; Region: PRK14485
862908005342	Cytochrome cbb3 oxidase subunit I.  Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction...; Region: cbb3_Oxidase_I; cd01661
862908005343	Low-spin heme binding site [chemical binding]; other site
862908005344	Putative water exit pathway; other site
862908005345	Binuclear center (active site) [active]
862908005346	Putative proton exit pathway; other site
862908005347	Cytochrome C oxidase, mono-heme subunit/FixO; Region: FixO; cl01130
862908005348	HMMPfam hit to PF02433, Cytochrome C oxidase, mono-heme subunit/FixO, score 1.9e-86
862908005349	PS00190 Cytochrome c family heme-binding site signature.
862908005350	13 probable transmembrane helices predicted for BMS1401 by TMHMM2.0 at aa 20-42, 62-81, 101-120, 130-152, 164-186, 206-228, 241-259, 274-296, 309-331, 346-368, 381-403, 436-458 and 498-520
862908005351	HMMPfam hit to PF00115, Cytochrome c oxidase, subunit I, score 9.7e-40
862908005352	PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature.
862908005353	Cytochrome oxidase maturation protein cbb3-type; Region: CcoS; pfam03597
862908005354	HMMPfam hit to PF03597, Cytochrome oxidase maturation protein cbb3-type, score 4.5e-16
862908005355	Signal peptide predicted for BMS1402 by SignalP 2.0 HMM (Signal peptide probability 0.947) with cleavage site probability 0.495 between residues 25 and 26
862908005356	1 probable transmembrane helix predicted for BMS1402 by TMHMM2.0 at aa 3-25
862908005357	Putative metal-binding domain of cation transport ATPase; Region: ATPase-cat_bd; pfam12156
862908005358	Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217
862908005359	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
862908005360	Soluble P-type ATPase [General function prediction only]; Region: COG4087
862908005361	8 probable transmembrane helices predicted for BMS1403 by TMHMM2.0 at aa 187-209, 214-236, 249-271, 276-295, 430-452, 462-484, 745-767 and 771-793
862908005362	HMMPfam hit to PF00702, Haloacid dehalogenase-like hydrolase, score 1.8e-17
862908005363	PS00154 E1-E2 ATPases phosphorylation site.
862908005364	HMMPfam hit to PF00122, E1-E2 ATPase-associated region, score 5.7e-38
862908005365	Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to...; Region: USP_Like; cd00293
862908005366	Ligand Binding Site [chemical binding]; other site
862908005367	HMMPfam hit to PF00582, UspA, score 5.5e-07
862908005368	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
862908005369	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
862908005370	ligand binding site [chemical binding]; other site
862908005371	flexible hinge region; other site
862908005372	HMMPfam hit to PF00027, Cyclic nucleotide-binding, score 0.00044
862908005373	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
862908005374	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
862908005375	ligand binding site [chemical binding]; other site
862908005376	flexible hinge region; other site
862908005377	helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cd00092
862908005378	putative switch regulator; other site
862908005379	non-specific DNA interactions [nucleotide binding]; other site
862908005380	DNA binding site [nucleotide binding]
862908005381	sequence specific DNA binding site [nucleotide binding]; other site
862908005382	putative cAMP binding site [chemical binding]; other site
862908005383	HMMPfam hit to PF00027, Cyclic nucleotide-binding, score 2.5e-19
862908005384	Molybdopterin biosynthesis enzyme [Coenzyme metabolism]; Region: MoeA; COG0303
862908005385	MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoeA; cd00887
862908005386	dimer interface [polypeptide binding]; other site
862908005387	putative functional site; other site
862908005388	putative MPT binding site; other site
862908005389	HMMPfam hit to PF03453, MoeA, N-terminal, domain I and II, score 6.8e-32
862908005390	HMMPfam hit to PF00994, Molybdenum cofactor biosynthesis protein, score 1.9e-30
862908005391	PS01079 Molybdenum cofactor biosynthesis proteins signature 2.
862908005392	PS00146 Beta-lactamase class-A active site.
862908005393	1 probable transmembrane helix predicted for BMS1409 by TMHMM2.0 at aa 13-35
862908005394	Signal peptide predicted for BMS1410 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.927 between residues 20 and 21
862908005395	Peptidase S8 family domain in Subtilisin-like proteins; Region: Peptidases_S8_Subtilisin_like; cd07473
862908005396	catalytic triad [active]
862908005397	putative active site [active]
862908005398	Signal peptide predicted for BMS1411 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.989 between residues 25 and 26
862908005399	HMMPfam hit to PF00082, Peptidase S8 and S53, subtilisin, kexin, sedolisin, score 3.3e-46
862908005400	PS00136 Serine proteases, subtilase family, aspartic acid active site.
862908005401	PS00137 Serine proteases, subtilase family, histidine active site.
862908005402	PS00017 ATP/GTP-binding site motif A (P-loop).
862908005403	P-type DNA transfer ATPase VirB11; Region: VirB11; TIGR02788
862908005404	Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to...; Region: VirB11-like_ATPase; cd01130
862908005405	Walker A motif; other site
862908005406	hexamer interface [polypeptide binding]; other site
862908005407	ATP binding site [chemical binding]; other site
862908005408	Walker B motif; other site
862908005409	HMMPfam hit to PF00437, Bacterial type II secretion system protein E, score 1.5e-68
862908005410	PS00017 ATP/GTP-binding site motif A (P-loop).
862908005411	Uncharacterized conserved protein [Function unknown]; Region: COG0327
862908005412	NIF3 (NGG1p interacting factor 3); Region: NIF3; pfam01784
862908005413	HMMPfam hit to PF01784, Protein of unknown function DUF34, score 4e-75
862908005414	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908005415	binding surface
862908005416	Tetratricopeptide repeat; Region: TPR_16; pfam13432
862908005417	TPR motif; other site
862908005418	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908005419	TPR repeat; Region: TPR_11; pfam13414
862908005420	binding surface
862908005421	TPR motif; other site
862908005422	HMMPfam hit to PF00515, TPR repeat, score 0.0081; HMMPfam hit to PF07719, , score 0.0013; PF07719, Tetratricopeptide repeat
862908005423	HMMPfam hit to PF07719, , score 0.02; PF07719, Tetratricopeptide repeat; HMMPfam hit to PF00515, TPR repeat, score 0.0017
862908005424	1 probable transmembrane helix predicted for BMS1418 by TMHMM2.0 at aa 19-41
862908005425	Signal peptide predicted for BMS1419 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.770 between residues 19 and 20
862908005426	Signal peptide predicted for BMS1420 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 between residues 28 and 29
862908005427	4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites; Region: 4HBT; cd00586
862908005428	active site
862908005429	HMMPfam hit to PF03061, Thioesterase superfamily, score 2.4e-09
862908005430	1 probable transmembrane helix predicted for BMS1423 by TMHMM2.0 at aa 53-75
862908005431	Peptidase domain in the S8 and S53 families; Region: Peptidases_S8_S53; cl10459
862908005432	PS00136 Serine proteases, subtilase family, aspartic acid active site.
862908005433	1 probable transmembrane helix predicted for BMS1424 by TMHMM2.0 at aa 28-50
862908005434	Predicted coiled-coil domain-containing protein; Region: TTKRSYEDQ; pfam10212
862908005435	PS00017 ATP/GTP-binding site motif A (P-loop).
862908005436	PS00017 ATP/GTP-binding site motif A (P-loop).
862908005437	Signal peptide predicted for BMS1425 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.997 between residues 31 and 32
862908005438	Methyltransferase domain; Region: Methyltransf_23; pfam13489
862908005439	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908005440	S-adenosylmethionine binding site [chemical binding]; other site
862908005441	Mechanosensitive ion channel; Region: MS_channel; pfam00924
862908005442	2 probable transmembrane helices predicted for BMS1427 by TMHMM2.0 at aa 29-48 and 79-101
862908005443	HMMPfam hit to PF00924, MscS Mechanosensitive ion channel, score 2.5e-64
862908005444	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
862908005445	Protein export membrane protein; Region: SecD_SecF; cl14618
862908005446	Signal peptide predicted for BMS1428 by SignalP 2.0 HMM (Signal peptide probability 0.953) with cleavage site probability 0.703 between residues 31 and 32
862908005447	HMMPfam hit to PF00873, Acriflavin resistance protein, score 5.2e-63
862908005448	12 probable transmembrane helices predicted for BMS1428 by TMHMM2.0 at aa 13-30, 336-358, 363-385, 392-414, 434-456, 463-485, 527-546, 864-883, 887-909, 916-938, 966-988 and 1000-1022
862908005449	Signal peptide predicted for BMS1429 by SignalP 2.0 HMM (Signal peptide probability 0.937) with cleavage site probability 0.773 between residues 20 and 21
862908005450	carotene isomerase; Region: carot_isom; TIGR02730
862908005451	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
862908005452	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908005453	3-oxoacyl-(acyl-carrier-protein) reductase; Region: 3oxo_ACP_reduc; TIGR01830
862908005454	NAD(P) binding site [chemical binding]; other site
862908005455	active site
862908005456	HMMPfam hit to PF00106, Short-chain dehydrogenase/reductase SDR, score 2.2e-76
862908005457	FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid...; Region: FabZ; cd01288
862908005458	HMMPfam hit to PF03061, Thioesterase superfamily, score 1.4e-08
862908005459	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908005460	Enoyl-(Acyl carrier protein) reductase; Region: adh_short_C2; pfam13561
862908005461	NAD(P) binding site [chemical binding]; other site
862908005462	active site
862908005463	Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5...; Region: PRX5_like; cd03013
862908005464	catalytic triad [active]
862908005465	dimer interface [polypeptide binding]; other site
862908005466	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
862908005467	HMMPfam hit to PF00462, Glutaredoxin, score 8.2e-10
862908005468	HMMPfam hit to PF00578, Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen, score 1.6e-34
862908005469	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl17215
862908005470	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908005471	3-beta hydroxysteroid dehydrogenase/isomerase family; Region: 3Beta_HSD; pfam01073
862908005472	NAD(P) binding site [chemical binding]; other site
862908005473	active site
862908005474	HMMPfam hit to PF01073, 3-beta hydroxysteroid dehydrogenase/isomerase, score 2.4e-60
862908005475	peptide synthase; Provisional; Region: PRK09274
862908005476	Uncharacterized subfamily of fatty acid CoA ligase (FACL); Region: FACL_like_1; cd05910
862908005477	acyl-activating enzyme (AAE) consensus motif; other site
862908005478	putative AMP binding site [chemical binding]; other site
862908005479	putative active site [active]
862908005480	putative CoA binding site [chemical binding]; other site
862908005481	HMMPfam hit to PF00501, AMP-dependent synthetase and ligase, score 1e-47
862908005482	1 probable transmembrane helix predicted for BMS1439 by TMHMM2.0 at aa 65-87
862908005483	haloalkane dehalogenase; Provisional; Region: PRK03592
862908005484	HMMPfam hit to PF00561, Alpha/beta hydrolase fold, score 6.3e-29
862908005485	3-oxoacyl-(acyl carrier protein) synthase III; Reviewed; Region: PRK09258
862908005486	Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl...; Region: KAS_III; cd00830
862908005487	dimer interface [polypeptide binding]; other site
862908005488	active site
862908005489	CoA binding pocket [chemical binding]; other site
862908005490	Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG1233
862908005491	1 probable transmembrane helix predicted for BMS1442 by TMHMM2.0 at aa 7-25
862908005492	Phosphopantetheine attachment site; Region: PP-binding; cl09936
862908005493	3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]; Region: FabB; COG0304
862908005494	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
862908005495	dimer interface [polypeptide binding]; other site
862908005496	active site
862908005497	HMMPfam hit to PF02801, Beta-ketoacyl synthase, score 1.9e-35
862908005498	HMMPfam hit to PF00109, Beta-ketoacyl synthase, score 1.4e-29
862908005499	PS00606 Beta-ketoacyl synthases active site.
862908005500	Predicted transcriptional regulators [Transcription]; Region: COG1510
862908005501	Predicted transcriptional regulator [Transcription]; Region: COG4738
862908005502	Signal peptide predicted for BMS1446 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.988 between residues 20 and 21
862908005503	Signal peptide predicted for BMS1447 by SignalP 2.0 HMM (Signal peptide probability 0.976) with cleavage site probability 0.919 between residues 18 and 19
862908005504	2 probable transmembrane helices predicted for BMS1448 by TMHMM2.0 at aa 12-31 and 179-201
862908005505	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 7.3e-16
862908005506	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 4.3e-29
862908005507	bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional; Region: PRK11563
862908005508	N-terminal domain of the monoamine oxidase C dehydratase; Region: ALDH_MaoC-N; cd07128
862908005509	substrate binding site [chemical binding]; other site
862908005510	dimer interface [polypeptide binding]; other site
862908005511	NADP binding site [chemical binding]; other site
862908005512	catalytic residues [active]
862908005513	The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated...; Region: hot_dog; cl00509
862908005514	active site 2 [active]
862908005515	active site 1 [active]
862908005516	HMMPfam hit to PF01575, MaoC-like dehydratase, score 3e-25
862908005517	HMMPfam hit to PF00171, Aldehyde dehydrogenase, score 7.7e-16
862908005518	PS00017 ATP/GTP-binding site motif A (P-loop).
862908005519	Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]; Region: Spo0J; COG1475
862908005520	ParB-like nuclease domain; Region: ParB; smart00470
862908005521	HMMPfam hit to PF02195, ParB-like nuclease, score 9.1e-12
862908005522	TIGR02147 family protein; Region: Fsuc_second
862908005523	Signal peptide predicted for BMS1454 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 between residues 18 and 19
862908005524	Domon-like ligand-binding domains; Region: DOMON_like; cl14783
862908005525	putative ligand binding site [chemical binding]; other site
862908005526	HflK protein; Region: hflK; TIGR01933
862908005527	Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form...; Region: Band_7_stomatin_like; cd03403
862908005528	HMMPfam hit to PF01145, Band 7 protein, score 2.2e-79
862908005529	1 probable transmembrane helix predicted for BMS1456 by TMHMM2.0 at aa 5-24
862908005530	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in a group of uncharacterized proteins from bacteria and archaea; Region: NTP-PPase_u4; cd11541
862908005531	putative metal binding site [ion binding]; other site
862908005532	HMMPfam hit to PF03819, MazG nucleotide pyrophosphohydrolase, score 5.4e-07
862908005533	Signal peptide predicted for BMS1459 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.983 between residues 24 and 25
862908005534	PS00190 Cytochrome c family heme-binding site signature.
862908005535	Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]; Region: NfeD; COG1030
862908005536	Caseinolytic protease (ClpP) is an ATP-dependent protease; Region: Clp_protease_like; cl15763
862908005537	active site
862908005538	NfeD-like C-terminal, partner-binding; Region: NfeD; pfam01957
862908005539	HMMPfam hit to PF01957, Protein of unknown function DUF107, score 9e-13
862908005540	4 probable transmembrane helices predicted for BMS1460 by TMHMM2.0 at aa 239-261, 271-293, 300-322 and 342-364
862908005541	Signal peptide predicted for BMS1460 by SignalP 2.0 HMM (Signal peptide probability 0.947) with cleavage site probability 0.544 between residues 26 and 27
862908005542	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
862908005543	5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional; Region: PRK15493
862908005544	active site
862908005545	HMMPfam hit to PF01979, Amidohydrolase, score 5e-26
862908005546	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
862908005547	non-specific DNA binding site [nucleotide binding]; other site
862908005548	salt bridge; other site
862908005549	sequence-specific DNA binding site [nucleotide binding]; other site
862908005550	HMMPfam hit to PF01381, Helix-turn-helix motif, score 1.1e-06
862908005551	Signal peptide predicted for BMS1463 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.990 between residues 20 and 21
862908005552	malate dehydrogenase; Provisional; Region: PRK05442
862908005553	Chloroplast-like malate dehydrogenases; Region: MDH_choloroplast_like; cd01338
862908005554	NAD(P) binding site [chemical binding]; other site
862908005555	dimer interface [polypeptide binding]; other site
862908005556	malate binding site [chemical binding]; other site
862908005557	HMMPfam hit to PF00056, Lactate/malate dehydrogenase, score 2.6e-42
862908005558	HMMPfam hit to PF02866, Lactate/malate dehydrogenase, score 2e-37
862908005559	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
862908005560	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
862908005561	ligand binding site [chemical binding]; other site
862908005562	HMMPfam hit to PF00027, Cyclic nucleotide-binding, score 3.8e-07
862908005563	1 probable transmembrane helix predicted for BMS1468 by TMHMM2.0 at aa 5-24
862908005564	Signal peptide predicted for BMS1468 by SignalP 2.0 HMM (Signal peptide probability 0.972) with cleavage site probability 0.724 between residues 17 and 18
862908005565	Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]; Region: COG0826
862908005566	Peptidase family U32; Region: Peptidase_U32; pfam01136
862908005567	HMMPfam hit to PF01136, Peptidase U32, score 1e-86
862908005568	PS01276 Peptidase family U32 signature.
862908005569	Peptidase family U32; Region: Peptidase_U32; pfam01136
862908005570	HMMPfam hit to PF01136, Peptidase U32, score 3.9e-05
862908005571	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3551
862908005572	Signal peptide predicted for BMS1471 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.945 between residues 20 and 21
862908005573	THUMP domain associated with S-adenosylmethionine-dependent methyltransferases; Region: THUMP_AdoMetMT; cd11715
862908005574	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
862908005575	PS00092 N-6 Adenine-specific DNA methylases signature.
862908005576	PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin; Region: PAP2_Aur1_like; cd03386
862908005577	active site
862908005578	8 probable transmembrane helices predicted for BMS1474 by TMHMM2.0 at aa 17-39, 44-61, 73-95, 141-163, 176-198, 229-251, 258-280 and 284-306
862908005579	Uncharacterized subfamily of the tetrapyrrole methylase family similar to ribosomal RNA small subunit methyltransferase I (RsmI); Region: RsmI_like; cd11649
862908005580	putative SAM binding site [chemical binding]; other site
862908005581	homodimer interface [polypeptide binding]; other site
862908005582	HMMPfam hit to PF00590, Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase, score 9.6e-05
862908005583	isopentenyl pyrophosphate isomerase; Provisional; Region: PRK05437
862908005584	TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl17186
862908005585	phosphate binding site [ion binding]; other site
862908005586	Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR); Region: HMG-CoA_reductase_classII; cd00644
862908005587	homodimer interface [polypeptide binding]; other site
862908005588	catalytic residues [active]
862908005589	NAD binding site [chemical binding]; other site
862908005590	substrate binding pocket [chemical binding]; other site
862908005591	flexible flap; other site
862908005592	HMMPfam hit to PF00368, Hydroxymethylglutaryl-coenzyme A reductase, score 1.9e-08
862908005593	PS00066 Hydroxymethylglutaryl-coenzyme A reductases signature 1.
862908005594	Mevalonate kinase [Lipid metabolism]; Region: ERG12; COG1577
862908005595	diphosphomevalonate decarboxylase; Region: mevDPdecarb; TIGR01240
862908005596	diphosphomevalonate decarboxylase; Region: PLN02407
862908005597	HMMPfam hit to PF00288, GHMP kinase, score 1.2e-05
862908005598	Mevalonate kinase [Lipid metabolism]; Region: ERG12; COG1577
862908005599	HMMPfam hit to PF00288, GHMP kinase, score 0.00015
862908005600	enoyl-CoA hydratase; Provisional; Region: PRK07659
862908005601	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
862908005602	substrate binding site [chemical binding]; other site
862908005603	oxyanion hole (OAH) forming residues; other site
862908005604	trimer interface [polypeptide binding]; other site
862908005605	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase, score 3.3e-11
862908005606	FecR protein; Region: FecR; pfam04773
862908005607	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
862908005608	HMMPfam hit to PF00158, Sigma-54 factor, interaction region, score 1.3e-10
862908005609	PilZ domain; Region: PilZ; pfam07238
862908005610	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908005611	Walker A motif; other site
862908005612	ATP binding site [chemical binding]; other site
862908005613	Walker B motif; other site
862908005614	arginine finger; other site
862908005615	HMMPfam hit to PF00158, Sigma-54 factor, interaction region, score 2.1e-14
862908005616	PS00017 ATP/GTP-binding site motif A (P-loop).
862908005617	Signal peptide predicted for BMS1485 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.905 between residues 25 and 26
862908005618	thioredoxin-disulfide reductase; Region: TRX_reduct; TIGR01292
862908005619	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
862908005620	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
862908005621	HMMPfam hit to PF00070, FAD-dependent pyridine nucleotide-disulphide oxidoreductase, score 1.3e-75
862908005622	PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site.
862908005623	Signal peptide predicted for BMS1488 by SignalP 2.0 HMM (Signal peptide probability 0.981) with cleavage site probability 0.711 between residues 27 and 28
862908005624	Signal peptide predicted for BMS1489 by SignalP 2.0 HMM (Signal peptide probability 0.967) with cleavage site probability 0.852 between residues 18 and 19
862908005625	Glycerol-3-phosphate dehydrogenase [Energy production and conversion]; Region: GlpA; COG0578
862908005626	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 2.5e-40
862908005627	Putative heavy-metal-binding; Region: YbjQ_1; pfam01906
862908005628	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
862908005629	preprotein translocase subunit SecA; Reviewed; Region: PRK12904
862908005630	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
862908005631	ATP binding site [chemical binding]; other site
862908005632	putative Mg++ binding site [ion binding]; other site
862908005633	SecA preprotein cross-linking domain; Region: SecA_PP_bind; smart00958
862908005634	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cl17351
862908005635	nucleotide binding region [chemical binding]; other site
862908005636	ATP-binding site [chemical binding]; other site
862908005637	SEC-C motif; Region: SEC-C; pfam02810
862908005638	HMMPfam hit to PF02810, SEC-C motif, score 7.2e-07
862908005639	HMMPfam hit to PF07516, SecA Wing and Scaffold, score 8.1e-63
862908005640	PS01312 Protein secA signatures.
862908005641	HMMPfam hit to PF07517, SecA DEAD-like, score 1.1e-148
862908005642	HMMPfam hit to PF01043, SecA preprotein cross-linking region, score 1e-65
862908005643	Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739
862908005644	Peptidase family M23; Region: Peptidase_M23; pfam01551
862908005645	HMMPfam hit to PF01551, Peptidase M23B, score 1.7e-51
862908005646	PS00881 Protein splicing signature.
862908005647	1 probable transmembrane helix predicted for BMS1493 by TMHMM2.0 at aa 27-49
862908005648	PS00430 TonB-dependent receptor proteins signature 1.
862908005649	Signal peptide predicted for BMS1494 by SignalP 2.0 HMM (Signal peptide probability 0.891) with cleavage site probability 0.802 between residues 18 and 19
862908005650	Signal peptide predicted for BMS1495 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.970 between residues 18 and 19
862908005651	Topoisomerase IA [DNA replication, recombination, and repair]; Region: TopA; COG0550
862908005652	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
862908005653	Sodium:dicarboxylate symporter family; Region: SDF; pfam00375
862908005654	HMMPfam hit to PF00375, Sodium:dicarboxylate symporter, score 2.2e-72
862908005655	8 probable transmembrane helices predicted for BMS1497 by TMHMM2.0 at aa 7-26, 57-74, 87-109, 167-189, 209-226, 241-263, 333-355 and 375-397
862908005656	Signal peptide predicted for BMS1497 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 between residues 27 and 28
862908005657	Fatty acid cis/trans isomerase (CTI); Region: CTI; pfam06934
862908005658	HMMPfam hit to PF06934, Fatty acid cistrans isomerase, score 3.7e-245
862908005659	PS00190 Cytochrome c family heme-binding site signature.
862908005660	Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence...; Region: PP2Cc; cd00143
862908005661	active site
862908005662	HMMPfam hit to PF00481, Protein phosphatase 2C-like, score 5.5e-07
862908005663	PrkA AAA domain; Region: AAA_PrkA; smart00763
862908005664	PrkA serine protein kinase C-terminal domain; Region: PrkA; pfam06798
862908005665	HMMPfam hit to PF06798, PrkA serine kinase, score 1.2e-150
862908005666	PS00017 ATP/GTP-binding site motif A (P-loop).
862908005667	hypothetical protein; Provisional; Region: PRK05325
862908005668	HMMPfam hit to PF04285, Protein of unknown function DUF444, score 2.1e-57
862908005669	Uncharacterized conserved protein [Function unknown]; Region: SpoVR; COG2719
862908005670	SpoVR like protein; Region: SpoVR; pfam04293
862908005671	HMMPfam hit to PF04293, SpoVR, score 1.9e-67
862908005672	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4254
862908005673	FecR protein; Region: FecR; pfam04773
862908005674	Signal peptide predicted for BMS1503 by SignalP 2.0 HMM (Signal peptide probability 0.975) with cleavage site probability 0.973 between residues 19 and 20
862908005675	Signal peptide predicted for BMS1504 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.995 between residues 19 and 20
862908005676	1 probable transmembrane helices predicted for BMS1505 by TMHMM2.0 at aa 4-26 and 39-61
862908005677	RNA polymerase factor sigma-32; Reviewed; Region: PRK06596
862908005678	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
862908005679	HMMPfam hit to PF00140, Sigma-70 region 1.2, score 7.2e-05
862908005680	HMMPfam hit to PF04542, Sigma-70 region 2, score 4.1e-19
862908005681	PS00715 Sigma-70 factors family signature 1.
862908005682	HMMPfam hit to PF04545, Sigma-70 region 4, score 3.7e-10
862908005683	Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome; Region: Ribosomal_S15p_S13e; cd00353
862908005684	16S/18S rRNA binding site [nucleotide binding]; other site
862908005685	S13e-L30e interaction site [polypeptide binding]; other site
862908005686	25S rRNA binding site [nucleotide binding]; other site
862908005687	HMMPfam hit to PF00312, Ribosomal protein S15, score 3.8e-27
862908005688	PS00362 Ribosomal protein S15 signature.
862908005689	polynucleotide phosphorylase/polyadenylase; Provisional; Region: PRK11824
862908005690	Polyribonucleotide nucleotidyltransferase, repeat 1; Region: RNase_PH_PNPase_1; cd11363
862908005691	RNase E interface [polypeptide binding]; other site
862908005692	trimer interface [polypeptide binding]; other site
862908005693	RNase PH-like 3'-5' exoribonucleases; Region: RNase_PH; cl03114
862908005694	oligomer interface [polypeptide binding]; other site
862908005695	RNA binding site [nucleotide binding]; other site
862908005696	Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to...; Region: PNPase_KH; cd02393
862908005697	putative nucleic acid binding region [nucleotide binding]; other site
862908005698	G-X-X-G motif; other site
862908005699	S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase  is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA; Region: S1_PNPase; cd04472
862908005700	RNA binding site [nucleotide binding]; other site
862908005701	domain interface; other site
862908005702	HMMPfam hit to PF01138, 3' exoribonuclease, score 7.6e-30
862908005703	HMMPfam hit to PF03725, 3' exoribonuclease, score 7.9e-08
862908005704	HMMPfam hit to PF01138, 3' exoribonuclease, score 2.3e-40
862908005705	HMMPfam hit to PF03725, 3' exoribonuclease, score 1.4e-22
862908005706	HMMPfam hit to PF00013, KH, type 1, score 2.4e-13
862908005707	HMMPfam hit to PF07650, KH, type 2, score 0.023
862908005708	HMMPfam hit to PF00575, RNA binding S1, score 1.6e-19
862908005709	Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557
862908005710	trimer interface [polypeptide binding]; other site
862908005711	active site
862908005712	HMMPfam hit to PF00692, DeoxyUTP pyrophosphatase, score 9.4e-13
862908005713	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
862908005714	Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633
862908005715	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
862908005716	catalytic loop [active]
862908005717	iron binding site [ion binding]; other site
862908005718	HMMPfam hit to PF00111, Ferredoxin, score 9.9e-10
862908005719	Signal peptide predicted for BMS1512 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.510 between residues 21 and 22
862908005720	Signal peptide predicted for BMS1514 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 between residues 19 and 20
862908005721	Signal peptide predicted for BMS1515 by SignalP 2.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.632 between residues 20 and 21
862908005722	Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad...; Region: Tryp_SPc; cl00149
862908005723	Signal peptide predicted for BMS1516 by SignalP 2.0 HMM (Signal peptide probability 0.881) with cleavage site probability 0.728 between residues 38 and 39
862908005724	HMMPfam hit to PF00089, Peptidase S1, chymotrypsin, score 2.3e-05
862908005725	PS00134 Serine proteases, trypsin family, histidine active site.
862908005726	PS00135 Serine proteases, trypsin family, serine active site.
862908005727	FecR protein; Region: FecR; pfam04773
862908005728	Signal peptide predicted for BMS1517 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.996 between residues 16 and 17
862908005729	FOG: GAF domain [Signal transduction mechanisms]; Region: FhlA; COG2203
862908005730	GAF domain; Region: GAF; pfam01590
862908005731	PAS fold; Region: PAS_3; pfam08447
862908005732	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
862908005733	PAS fold; Region: PAS_3; pfam08447
862908005734	putative active site [active]
862908005735	heme pocket [chemical binding]; other site
862908005736	PAS fold; Region: PAS_3; pfam08447
862908005737	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908005738	dimer interface [polypeptide binding]; other site
862908005739	phosphorylation site [posttranslational modification]
862908005740	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908005741	ATP binding site [chemical binding]; other site
862908005742	Mg2+ binding site [ion binding]; other site
862908005743	G-X-G motif; other site
862908005744	Response regulator receiver domain; Region: Response_reg; pfam00072
862908005745	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908005746	active site
862908005747	phosphorylation site [posttranslational modification]
862908005748	intermolecular recognition site; other site
862908005749	dimerization interface [polypeptide binding]; other site
862908005750	HMMPfam hit to PF01590, GAF, score 1.2e-20
862908005751	HMMPfam hit to PF00785, PAC motif, score 3.9e-06
862908005752	HMMPfam hit to PF00785, PAC motif, score 0.00013
862908005753	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 5.5e-26
862908005754	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 8.6e-41
862908005755	PS00136 Serine proteases, subtilase family, aspartic acid active site.
862908005756	HMMPfam hit to PF00072, Response regulator receiver, score 3.4e-26
862908005757	peroxiredoxin; Region: AhpC; TIGR03137
862908005758	Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides; Region: PRX_Typ2cys; cd03015
862908005759	dimer interface [polypeptide binding]; other site
862908005760	decamer (pentamer of dimers) interface [polypeptide binding]; other site
862908005761	catalytic triad [active]
862908005762	peroxidatic and resolving cysteines [active]
862908005763	HMMPfam hit to PF00578, Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen, score 9.3e-70
862908005764	alkyl hydroperoxide reductase subunit F; Provisional; Region: PRK15317
862908005765	Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction...; Region: AhpF_NTD_N; cd02974
862908005766	catalytic residue [active]
862908005767	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
862908005768	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
862908005769	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
862908005770	HMMPfam hit to PF00070, FAD-dependent pyridine nucleotide-disulphide oxidoreductase, score 5.2e-65
862908005771	PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site.
862908005772	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908005773	Signal peptide predicted for BMS1521 by SignalP 2.0 HMM (Signal peptide probability 0.980) with cleavage site probability 0.798 between residues 19 and 20
862908005774	flagellar hook protein FlgE; Validated; Region: flgE; PRK05682
862908005775	Flagellar basal body protein FlaE; Region: FlaE; pfam07559
862908005776	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
862908005777	HMMPfam hit to PF07559, Flagellar basal body FlaE, score 1.3e-05
862908005778	PS00017 ATP/GTP-binding site motif A (P-loop).
862908005779	HMMPfam hit to PF06429, Protein of unknown function DUF1078, score 8e-11
862908005780	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
862908005781	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
862908005782	non-specific DNA binding site [nucleotide binding]; other site
862908005783	salt bridge; other site
862908005784	sequence-specific DNA binding site [nucleotide binding]; other site
862908005785	HMMPfam hit to PF01381, Helix-turn-helix motif, score 5e-11
862908005786	Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]; Region: sufE; COG2166
862908005787	HMMPfam hit to PF02657, Fe-S metabolism associated SufE, score 4.8e-54
862908005788	Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the...; Region: ALAD_PBGS_aspartate_rich; cd04823
862908005789	dimer interface [polypeptide binding]; other site
862908005790	allosteric magnesium binding site [ion binding]; other site
862908005791	active site
862908005792	aspartate-rich active site metal binding site; other site
862908005793	Schiff base residues; other site
862908005794	HMMPfam hit to PF00490, Delta-aminolevulinic acid dehydratase, score 2.6e-200
862908005795	PS00169 Delta-aminolevulinic acid dehydratase active site.
862908005796	V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]; Region: COG3591
862908005797	PS00673 Serine proteases, V8 family, serine active site.
862908005798	PS00134 Serine proteases, trypsin family, histidine active site.
862908005799	Signal peptide predicted for BMS1529 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.994 between residues 22 and 23
862908005800	Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446
862908005801	HMMPfam hit to PF00753, Beta-lactamase-like, score 4.5e-22
862908005802	Signal peptide predicted for BMS1531 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.998 between residues 18 and 19
862908005803	Response regulator receiver domain; Region: Response_reg; pfam00072
862908005804	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908005805	active site
862908005806	phosphorylation site [posttranslational modification]
862908005807	intermolecular recognition site; other site
862908005808	dimerization interface [polypeptide binding]; other site
862908005809	HMMPfam hit to PF00072, Response regulator receiver, score 3.2e-11
862908005810	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscS; COG0668
862908005811	Mechanosensitive ion channel; Region: MS_channel; pfam00924
862908005812	HMMPfam hit to PF00924, MscS Mechanosensitive ion channel, score 2.6e-51
862908005813	4 probable transmembrane helices predicted for BMS1536 by TMHMM2.0 at aa 189-211, 232-249, 264-286 and 307-329
862908005814	Signal peptide predicted for BMS1536 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.935 between residues 19 and 20
862908005815	ATP-dependent chaperone ClpB; Region: chaperone_ClpB; TIGR03346
862908005816	Clp amino terminal domain; Region: Clp_N; pfam02861
862908005817	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908005818	Walker A motif; other site
862908005819	ATP binding site [chemical binding]; other site
862908005820	Walker B motif; other site
862908005821	arginine finger; other site
862908005822	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908005823	Walker A motif; other site
862908005824	ATP binding site [chemical binding]; other site
862908005825	Walker B motif; other site
862908005826	arginine finger; other site
862908005827	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; pfam10431
862908005828	HMMPfam hit to PF02861, Clp, N terminal, score 1.3e-05
862908005829	HMMPfam hit to PF00004, AAA ATPase, central region, score 2.8e-11
862908005830	PS00017 ATP/GTP-binding site motif A (P-loop).
862908005831	PS00870 Chaperonins clpA/B signature 1.
862908005832	HMMPfam hit to PF07724, , score 1.4e-81
862908005833	HMMPfam hit to PF00004, AAA ATPase, central region, score 2.1e-05
862908005834	PS00017 ATP/GTP-binding site motif A (P-loop).
862908005835	PS00871 Chaperonins clpA/B signature 2.
862908005836	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
862908005837	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
862908005838	ligand binding site [chemical binding]; other site
862908005839	flexible hinge region; other site
862908005840	HMMPfam hit to PF00027, Cyclic nucleotide-binding, score 8e-23
862908005841	Leucine rich repeat; Region: LRR_8; pfam13855
862908005842	HMMPfam hit to PF00560, Leucine-rich repeat, score 0.22
862908005843	HMMPfam hit to PF00560, Leucine-rich repeat, score 5.9
862908005844	HMMPfam hit to PF00560, Leucine-rich repeat, score 0.028
862908005845	chromosome segregation protein SMC, primarily archaeal type; Region: SMC_prok_A; TIGR02169
862908005846	PS00017 ATP/GTP-binding site motif A (P-loop).
862908005847	Signal peptide predicted for BMS1540 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.753 between residues 34 and 35
862908005848	2 probable transmembrane helices predicted for BMS1541 by TMHMM2.0 at aa 10-29 and 36-58
862908005849	Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent  decarboxylase in beta-alanine production; Region: Asp_decarbox; cd06919
862908005850	tetramerization interface [polypeptide binding]; other site
862908005851	active site
862908005852	HMMPfam hit to PF02261, Aspartate decarboxylase, score 3.7e-43
862908005853	ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Region: ACT; cl09141
862908005854	ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Region: ACT; cl09141
862908005855	phosphoserine phosphatase SerB; Region: serB; TIGR00338
862908005856	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
862908005857	motif II; other site
862908005858	HMMPfam hit to PF00702, Haloacid dehalogenase-like hydrolase, score 1.3e-30
862908005859	CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453
862908005860	4 probable transmembrane helices predicted for BMS1544 by TMHMM2.0 at aa 20-42, 52-74, 95-117 and 171-193
862908005861	HMMPfam hit to PF01066, CDP-alcohol phosphatidyltransferase, score 4.1e-26
862908005862	PS00379 CDP-alcohol phosphatidyltransferases signature.
862908005863	PilZ domain; Region: PilZ; pfam07238
862908005864	Bacterial fructose-1,6-bisphosphatase, glpX-encoded; Region: FBPase_glpX; pfam03320
862908005865	Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core...; Region: FBPase_glpX; cd01516
862908005866	putative active site [active]
862908005867	HMMPfam hit to PF03320, GlpX, score 2.5e-179
862908005868	START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; Region: SRPBCC; cl14643
862908005869	hydrophobic ligand binding site; other site
862908005870	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins; Region: PLPDE_III_YBL036c_like; cd00635
862908005871	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
862908005872	catalytic residue [active]
862908005873	HMMPfam hit to PF01168, Alanine racemase, N-terminal, score 1.3e-05
862908005874	PS01211 Uncharacterized protein family UPF0001 signature.
862908005875	Isopenicillin N synthase and related dioxygenases [General function prediction only]; Region: PcbC; COG3491
862908005876	non-haem dioxygenase in morphine synthesis N-terminal; Region: DIOX_N; pfam14226
862908005877	2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy; pfam03171
862908005878	HMMPfam hit to PF03171, 2OG-Fe(II) oxygenase superfamily, score 2.7e-16
862908005879	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
862908005880	HMMPfam hit to PF00561, Alpha/beta hydrolase fold, score 5.1e-09
862908005881	Fatty acid desaturase; Region: FA_desaturase; pfam00487
862908005882	The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the...; Region: Membrane-FADS-like; cd01060
862908005883	putative di-iron ligands [ion binding]; other site
862908005884	6 probable transmembrane helices predicted for BMS1553 by TMHMM2.0 at aa 9-31, 41-63, 75-97, 119-141, 154-176 and 180-202
862908005885	HMMPfam hit to PF00487, Fatty acid desaturase, score 1.1e-08
862908005886	Fatty acid desaturase; Region: FA_desaturase; pfam00487
862908005887	The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the...; Region: Membrane-FADS-like; cd01060
862908005888	putative di-iron ligands [ion binding]; other site
862908005889	4 probable transmembrane helices predicted for BMS1554 by TMHMM2.0 at aa 12-31, 41-63, 172-194 and 214-236
862908005890	HMMPfam hit to PF00487, Fatty acid desaturase, score 2.5e-06
862908005891	Signal peptide predicted for BMS1555 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 between residues 19 and 20
862908005892	Signal peptide predicted for BMS1556 by SignalP 2.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.673 between residues 23 and 24
862908005893	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
862908005894	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
862908005895	P-loop; other site
862908005896	Magnesium ion binding site [ion binding]; other site
862908005897	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
862908005898	Magnesium ion binding site [ion binding]; other site
862908005899	HMMPfam hit to PF01656, Cobyrinic acid a,c-diamide synthase, score 2.7e-29
862908005900	Domain of unknown function (DUF4105); Region: DUF4105; pfam13387
862908005901	Signal peptide predicted for BMS1561 by SignalP 2.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.532 between residues 16 and 17
862908005902	Putative catalytic NodB homology domain of uncharacterized prokaryotic polysaccharide deacetylases which consist of a 6-stranded beta/alpha barrel; Region: CE4_DAC_u1_6s; cd10970
862908005903	putative active site [active]
862908005904	putative metal binding site [ion binding]; other site
862908005905	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
862908005906	DltD central region; Region: DltD_M; pfam04918
862908005907	Signal peptide predicted for BMS1563 by SignalP 2.0 HMM (Signal peptide probability 0.689) with cleavage site probability 0.633 between residues 19 and 20
862908005908	Response regulator receiver domain; Region: Response_reg; pfam00072
862908005909	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908005910	active site
862908005911	phosphorylation site [posttranslational modification]
862908005912	intermolecular recognition site; other site
862908005913	dimerization interface [polypeptide binding]; other site
862908005914	HMMPfam hit to PF00072, Response regulator receiver, score 1.2e-17
862908005915	Glycosyltransferase like family 2; Region: Glyco_tranf_2_3; pfam13641
862908005916	CESA_like is  the cellulose synthase superfamily; Region: CESA_like; cd06423
862908005917	DXD motif; other site
862908005918	5 probable transmembrane helices predicted for BMS1565 by TMHMM2.0 at aa 7-29, 49-71, 324-346, 361-383 and 390-412
862908005919	HMMPfam hit to PF00535, Glycosyl transferase, family 2, score 2.8e-40
862908005920	1 probable transmembrane helix predicted for BMS1566 by TMHMM2.0 at aa 7-29
862908005921	Queuosine biosynthesis protein; Region: Queuosine_synth; pfam02547
862908005922	S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Region: queA; TIGR00113
862908005923	HMMPfam hit to PF02547, Queuosine biosynthesis protein, score 3e-76
862908005924	queuine tRNA-ribosyltransferase; Provisional; Region: tgt; PRK00112
862908005925	Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]; Region: Tgt; COG0343
862908005926	HMMPfam hit to PF01702, Queuine/other tRNA-ribosyltransferase, score 4e-110
862908005927	Preprotein translocase subunit; Region: YajC; pfam02699
862908005928	1 probable transmembrane helix predicted for BMS1570 by TMHMM2.0 at aa 20-42
862908005929	HMMPfam hit to PF02699, YajC, score 9.5e-28
862908005930	mttA/Hcf106 family; Region: MttA_Hcf106; cl00788
862908005931	HMMPfam hit to PF02416, Bacterial sec-independent translocation protein mttA/Hcf106, score 1.4e-13
862908005932	1 probable transmembrane helix predicted for BMS1571 by TMHMM2.0 at aa 4-21
862908005933	Preprotein translocase subunit SecD [Intracellular trafficking and secretion]; Region: SecD; COG0342
862908005934	protein-export membrane protein, SecD/SecF family; Region: 2A0604s01; TIGR00916
862908005935	Signal peptide predicted for BMS1572 by SignalP 2.0 HMM (Signal peptide probability 0.741) with cleavage site probability 0.407 between residues 31 and 32
862908005936	6 probable transmembrane helices predicted for BMS1572 by TMHMM2.0 at aa 5-27, 411-428, 435-457, 461-483, 504-526 and 530-552
862908005937	HMMPfam hit to PF07549, SecD/SecF/SecDF export membrane protein, score 0.0014
862908005938	PS00017 ATP/GTP-binding site motif A (P-loop).
862908005939	HMMPfam hit to PF02355, SecD/SecF/SecDF export membrane protein, score 1.1e-08
862908005940	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908005941	preprotein translocase subunit SecF; Reviewed; Region: secF; PRK13022
862908005942	Protein export membrane protein; Region: SecD_SecF; pfam02355
862908005943	Signal peptide predicted for BMS1573 by SignalP 2.0 HMM (Signal peptide probability 0.927) with cleavage site probability 0.878 between residues 34 and 35
862908005944	5 probable transmembrane helices predicted for BMS1573 by TMHMM2.0 at aa 13-35, 138-157, 178-200, 242-264 and 271-293
862908005945	HMMPfam hit to PF07549, SecD/SecF/SecDF export membrane protein, score 0.00022
862908005946	HMMPfam hit to PF02355, SecD/SecF/SecDF export membrane protein, score 2.9e-67
862908005947	PS00860 GTP cyclohydrolase I signature 2.
862908005948	2 probable transmembrane helices predicted for BMS1574 by TMHMM2.0 at aa 129-147 and 168-190
862908005949	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
862908005950	IHF - DNA interface [nucleotide binding]; other site
862908005951	IHF dimer interface [polypeptide binding]; other site
862908005952	HMMPfam hit to PF00216, Histone-like bacterial DNA-binding protein, score 3e-33
862908005953	Signal peptide predicted for BMS1579 by SignalP 2.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.792 between residues 18 and 19
862908005954	Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]; Region: HtpX; COG0501
862908005955	HMMPfam hit to PF01435, Peptidase M48, Ste24p, score 7.9e-26
862908005956	2 probable transmembrane helices predicted for BMS1580 by TMHMM2.0 at aa 175-194 and 209-231
862908005957	hypothetical protein; Validated; Region: PRK08223
862908005958	ThiF family; Region: ThiF; pfam00899
862908005959	ATP binding site [chemical binding]; other site
862908005960	HMMPfam hit to PF00899, UBA/THIF-type NAD/FAD binding fold, score 4.5e-21
862908005961	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908005962	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cl00080
862908005963	dimer interface [polypeptide binding]; other site
862908005964	phosphorylation site [posttranslational modification]
862908005965	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908005966	ATP binding site [chemical binding]; other site
862908005967	Mg2+ binding site [ion binding]; other site
862908005968	G-X-G motif; other site
862908005969	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 2.2e-17
862908005970	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 0.0025
862908005971	hypothetical protein; Provisional; Region: PRK05170
862908005972	HMMPfam hit to PF05779, Uncharacterised conserved protein UCP006173, score 3.4e-62
862908005973	Penicillin-insensitive murein endopeptidase; Region: Peptidase_M74; cl01538
862908005974	Signal peptide predicted for BMS1586 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 between residues 18 and 19
862908005975	HMMPfam hit to PF01520, Cell wall hydrolase/autolysin, score 5e-38
862908005976	Bacterial SH3 domain; Region: SH3_3; cl17532
862908005977	1 probable transmembrane helix predicted for BMS1588 by TMHMM2.0 at aa 141-163
862908005978	M14 family of metallocarboxypeptidases and related proteins; Region: Peptidase_M14_like; cl11393
862908005979	Succinylglutamate desuccinylase / Aspartoacylase family; Region: AstE_AspA; pfam04952
862908005980	active site
862908005981	Zn binding site [ion binding]; other site
862908005982	HMMPfam hit to PF04952, Succinylglutamate desuccinylase/aspartoacylase, score 2.4e-51
862908005983	PS00881 Protein splicing signature.
862908005984	Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]; Region: COG2220
862908005985	Beta-lactamase superfamily domain; Region: Lactamase_B_2; pfam12706
862908005986	Signal peptide predicted for BMS1590 by SignalP 2.0 HMM (Signal peptide probability 0.660) with cleavage site probability 0.320 between residues 22 and 23
862908005987	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908005988	Restriction endonuclease [Defense mechanisms]; Region: McrA; COG1403
862908005989	HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and...; Region: HNHc; cd00085
862908005990	active site
862908005991	HMMPfam hit to PF01844, HNH endonuclease, score 1.2e-08
862908005992	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
862908005993	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908005994	Signal peptide predicted for BMS1595 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 20 and 21
862908005995	Signal peptide predicted for BMS1596 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 between residues 29 and 30
862908005996	1 probable transmembrane helix predicted for BMS1596 by TMHMM2.0 at aa 9-31
862908005997	Signal peptide predicted for BMS1597 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.972 between residues 36 and 37
862908005998	1 probable transmembrane helix predicted for BMS1597 by TMHMM2.0 at aa 21-43
862908005999	P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FimC; COG3121
862908006000	putative fimbrial protein TcfA; Provisional; Region: PRK15308
862908006001	Signal peptide predicted for BMS1598 by SignalP 2.0 HMM (Signal peptide probability 0.964) with cleavage site probability 0.381 between residues 18 and 19
862908006002	Type VII secretion system (T7SS), usher protein; Region: Usher; pfam00577
862908006003	Signal peptide predicted for BMS1599 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.958 between residues 19 and 20
862908006004	HMMPfam hit to PF00577, Fimbrial biogenesis outer membrane usher protein, score 0.0013
862908006005	Signal peptide predicted for BMS1600 by SignalP 2.0 HMM (Signal peptide probability 0.618) with cleavage site probability 0.610 between residues 17 and 18
862908006006	Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]; Region: PurF; COG0034
862908006007	Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to...; Region: Gn_AT_II; cl00319
862908006008	active site
862908006009	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
862908006010	active site
862908006011	HMMPfam hit to PF00310, Glutamine amidotransferase, class-II, score 1.4e-24
862908006012	HMMPfam hit to PF00156, Phosphoribosyltransferase, score 3e-09
862908006013	PS00103 Purine/pyrimidine phosphoribosyl transferases signature.
862908006014	AIR carboxylase; Region: AIRC; cl00310
862908006015	HMMPfam hit to PF00731, 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase, score 6.2e-20
862908006016	ATP binding site [chemical binding]; other site
862908006017	active site
862908006018	5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase; Region: SAICAR_synt; cl00231
862908006019	substrate binding site [chemical binding]; other site
862908006020	HMMPfam hit to PF01259, SAICAR synthetase, score 1.8e-06
862908006021	phosphoribosylamine--glycine ligase; Provisional; Region: PRK00885
862908006022	Phosphoribosylglycinamide synthetase, N domain; Region: GARS_N; pfam02844
862908006023	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908006024	Phosphoribosylglycinamide synthetase, C domain; Region: GARS_C; pfam02843
862908006025	HMMPfam hit to PF02844, Phosphoribosylglycinamide synthetase, score 2.7e-22
862908006026	HMMPfam hit to PF02842, Phosphoribosylglycinamide synthetase, score 2.4e-16
862908006027	HMMPfam hit to PF01071, Phosphoribosylglycinamide synthetase, score 4.1e-51
862908006028	PS00184 Phosphoribosylglycinamide synthetase signature.
862908006029	HMMPfam hit to PF02843, Phosphoribosylglycinamide synthetase, score 4.5e-08
862908006030	Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]; Region: PurL; COG0046
862908006031	PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP; Region: PurL_repeat1; cd02203
862908006032	dimerization interface [polypeptide binding]; other site
862908006033	ATP binding site [chemical binding]; other site
862908006034	PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP; Region: PurL_repeat2; cd02204
862908006035	ATP binding site [chemical binding]; other site
862908006036	dimerization interface [polypeptide binding]; other site
862908006037	HMMPfam hit to PF00586, AIR synthase related protein, score 1e-28
862908006038	HMMPfam hit to PF02769, AIR synthase related protein, C-terminal, score 2.2e-29
862908006039	HMMPfam hit to PF02769, AIR synthase related protein, C-terminal, score 1e-05
862908006040	phosphoribosylformylglycinamidine synthase I; Region: FGAM_synth_I; TIGR01737
862908006041	Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GAT_1; cl00020
862908006042	conserved cys residue [active]
862908006043	PS00442 Glutamine amidotransferases class-I active site.
862908006044	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional; Region: purH; PRK00881
862908006045	Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal  ATIC formylase domain that formylates...; Region: IMPCH; cd01421
862908006046	purine monophosphate binding site [chemical binding]; other site
862908006047	dimer interface [polypeptide binding]; other site
862908006048	putative catalytic residues [active]
862908006049	AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas; smart00798
862908006050	HMMPfam hit to PF02142, Methylglyoxal synthase-like, score 9.7e-31
862908006051	HMMPfam hit to PF01808, AICARFT/IMPCHase bienzyme, score 5e-75
862908006052	phosphoribosylaminoimidazole synthetase; Provisional; Region: PRK05385
862908006053	PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis; Region: PurM; cd02196
862908006054	dimerization interface [polypeptide binding]; other site
862908006055	putative ATP binding site [chemical binding]; other site
862908006056	HMMPfam hit to PF00586, AIR synthase related protein, score 4.3e-53
862908006057	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006058	HMMPfam hit to PF02769, AIR synthase related protein, C-terminal, score 2.4e-12
862908006059	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908006060	S-adenosylmethionine binding site [chemical binding]; other site
862908006061	Signal peptide predicted for BMS1612 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.984 between residues 22 and 23
862908006062	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908006063	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908006064	dimer interface [polypeptide binding]; other site
862908006065	phosphorylation site [posttranslational modification]
862908006066	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908006067	ATP binding site [chemical binding]; other site
862908006068	Mg2+ binding site [ion binding]; other site
862908006069	G-X-G motif; other site
862908006070	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 9.5e-16
862908006071	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 1.9e-05
862908006072	9 probable transmembrane helices predicted for BMS1613 by TMHMM2.0 at aa 10-32, 163-185, 195-214, 227-246, 251-273, 285-302, 312-331, 344-366 and 372-394
862908006073	Signal peptide predicted for BMS1614 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.994 between residues 20 and 21
862908006074	Signal peptide predicted for BMS1615 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.853 between residues 27 and 28
862908006075	Putative amidoligase enzyme; Region: Amidoligase_2; pfam12224
862908006076	Signal peptide predicted for BMS1616 by SignalP 2.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.395 between residues 31 and 32
862908006077	C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some...; Region: Peptidase_C1; cl00298
862908006078	active site
862908006079	C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some...; Region: Peptidase_C1; cl00298
862908006080	active site
862908006081	Signal peptide predicted for BMS1617 by SignalP 2.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.978 between residues 18 and 19
862908006082	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site.
862908006083	hypothetical protein; Provisional; Region: PRK09256
862908006084	Putative flagellar system-associated repeat; Region: SWM_repeat; pfam13753
862908006085	Bacterial Ig-like domain (group 3); Region: Big_3_4; pfam13754
862908006086	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006087	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006088	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006089	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006090	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006091	Signal peptide predicted for BMS1619 by SignalP 2.0 HMM (Signal peptide probability 0.985) with cleavage site probability 0.786 between residues 24 and 25
862908006092	peptide chain release factor 3; Provisional; Region: prfC; PRK00741
862908006093	Release Factor 3 (RF3) protein involved in the terminal step of translocation in bacteria; Region: RF3; cd04169
862908006094	G1 box; other site
862908006095	putative GEF interaction site [polypeptide binding]; other site
862908006096	GTP/Mg2+ binding site [chemical binding]; other site
862908006097	Switch I region; other site
862908006098	G2 box; other site
862908006099	G3 box; other site
862908006100	Switch II region; other site
862908006101	G4 box; other site
862908006102	G5 box; other site
862908006103	RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the...; Region: RF3_II; cd03689
862908006104	HMMPfam hit to PF03144, Elongation factor Tu, domain 2, score 5.1e-10
862908006105	HMMPfam hit to PF00009, Protein synthesis factor, GTP-binding, score 9.4e-52
862908006106	PS00301 GTP-binding elongation factors signature.
862908006107	1 probable transmembrane helix predicted for BMS1621 by TMHMM2.0 at aa 17-39
862908006108	Signal peptide predicted for BMS1621 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 between residues 36 and 37
862908006109	SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely...; Region: SGNH_hydrolase; cl01053
862908006110	active site
862908006111	oxyanion hole [active]
862908006112	1 probable transmembrane helix predicted for BMS1623 by TMHMM2.0 at aa 5-27
862908006113	Signal peptide predicted for BMS1623 by SignalP 2.0 HMM (Signal peptide probability 0.983) with cleavage site probability 0.868 between residues 26 and 27
862908006114	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
862908006115	Signal peptide predicted for BMS1624 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 between residues 19 and 20
862908006116	PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH  (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme.  DCoH stimulates gene expression by...; Region: PCD_DCoH; cl00942
862908006117	aromatic arch; other site
862908006118	DCoH dimer interaction site [polypeptide binding]; other site
862908006119	DCoH /HNF-1 dimer interaction site [polypeptide binding]; other site
862908006120	DCoH tetramer interaction site [polypeptide binding]; other site
862908006121	substrate binding site [chemical binding]; other site
862908006122	HMMPfam hit to PF01329, Transcriptional coactivator/pterin dehydratase, score 1.1e-09
862908006123	alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins; Region: alpha-crystallin-Hsps_p23-like; cl00175
862908006124	Signal peptide predicted for BMS1626 by SignalP 2.0 HMM (Signal peptide probability 0.828) with cleavage site probability 0.754 between residues 15 and 16
862908006125	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
862908006126	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
862908006127	non-specific DNA binding site [nucleotide binding]; other site
862908006128	salt bridge; other site
862908006129	sequence-specific DNA binding site [nucleotide binding]; other site
862908006130	Cupin domain; Region: Cupin_2; pfam07883
862908006131	HMMPfam hit to PF01381, Helix-turn-helix motif, score 4.3e-20
862908006132	superoxide dismutase; Provisional; Region: PRK10543
862908006133	Iron/manganese superoxide dismutases, alpha-hairpin domain; Region: Sod_Fe_N; pfam00081
862908006134	Iron/manganese superoxide dismutases, C-terminal domain; Region: Sod_Fe_C; pfam02777
862908006135	HMMPfam hit to PF00081, Manganese and iron superoxide dismutase, score 2.8e-44
862908006136	HMMPfam hit to PF02777, Manganese and iron superoxide dismutase, score 2.3e-61
862908006137	PS00088 Manganese and iron superoxide dismutases signature.
862908006138	Signal peptide predicted for BMS1630 by SignalP 2.0 HMM (Signal peptide probability 0.977) with cleavage site probability 0.472 between residues 51 and 52
862908006139	2 probable transmembrane helices predicted for BMS1630 by TMHMM2.0 at aa 5-27 and 31-50
862908006140	Na+/phosphate symporter [Inorganic ion transport and metabolism]; Region: NptA; COG1283
862908006141	Na+/Pi-cotransporter; Region: Na_Pi_cotrans; pfam02690
862908006142	Na+/Pi-cotransporter; Region: Na_Pi_cotrans; pfam02690
862908006143	9 probable transmembrane helices predicted for BMS1631 by TMHMM2.0 at aa 4-21, 50-72, 82-104, 111-125, 135-157, 178-200, 215-237, 249-271 and 295-317
862908006144	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006145	HMMPfam hit to PF02690, Na+/Pi-cotransporter, score 6.4e-55
862908006146	MarR family; Region: MarR_2; cl17246
862908006147	Transcriptional regulators [Transcription]; Region: MarR; COG1846
862908006148	HMMPfam hit to PF01047, Bacterial regulatory protein, MarR, score 4.6e-14
862908006149	Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per...; Region: GSH_Peroxidase; cd00340
862908006150	catalytic residues [active]
862908006151	dimer interface [polypeptide binding]; other site
862908006152	HMMPfam hit to PF00255, Glutathione peroxidase, score 4.5e-37
862908006153	Cupredoxin-like domain; Region: Cupredoxin_1; cl17234
862908006154	Type II/IV secretion system protein; Region: T2SE; pfam00437
862908006155	Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to...; Region: VirB11-like_ATPase; cd01130
862908006156	ATP binding site [chemical binding]; other site
862908006157	Walker A motif; other site
862908006158	hexamer interface [polypeptide binding]; other site
862908006159	Walker B motif; other site
862908006160	HMMPfam hit to PF00437, Bacterial type II secretion system protein E, score 9.7e-82
862908006161	PS00227 Tubulin subunits alpha, beta, and gamma signature.
862908006162	PS00017 ATP/GTP-binding site motif A (P-loop).
862908006163	Similar to N-terminus of Pseudomonas chlororaphis (pseudomonas aureofaciens). putative uncharacterized protein (fragment). UniProt:Q840I1 (EMBL:AY163857 (127 aa) fasta scores: E()=6, 25.373% id in 67 aa
862908006164	Signal peptide predicted for BMS1638 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.888 between residues 21 and 22
862908006165	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; pfam13505
862908006166	Signal peptide predicted for BMS1639 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.837 between residues 26 and 27
862908006167	COMM_Domain, a family of domains found at the C-terminus of HCarG, the copper metabolism gene MURR1 product, and related proteins. Presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in...; Region: Commd; cl06336
862908006168	4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites; Region: 4HBT; cd00586
862908006169	active site
862908006170	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
862908006171	Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race; cl00518
862908006172	HMMPfam hit to PF01177, Asp/Glu racemase, score 8.4e-42
862908006173	PS00924 Aspartate and glutamate racemases signature 2.
862908006174	enolase; Provisional; Region: eno; PRK00077
862908006175	Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions; Region: enolase; cd03313
862908006176	dimer interface [polypeptide binding]; other site
862908006177	metal binding site [ion binding]; metal-binding site
862908006178	substrate binding pocket [chemical binding]; other site
862908006179	HMMPfam hit to PF03952, Enolase, score 1.6e-64
862908006180	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006181	HMMPfam hit to PF00113, Enolase, score 1.1e-145
862908006182	PS00164 Enolase signature.
862908006183	4 probable transmembrane helices predicted for BMS1645 by TMHMM2.0 at aa 13-35, 91-113, 126-144 and 154-176
862908006184	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
862908006185	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 0.017
862908006186	Signal peptide predicted for BMS1646 by SignalP 2.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.942 between residues 18 and 19
862908006187	Signal peptide predicted for BMS1647 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 between residues 23 and 24
862908006188	1 probable transmembrane helix predicted for BMS1647 by TMHMM2.0 at aa 217-239
862908006189	Adenylate forming domain, Class I; Region: AFD_class_I; cl17068
862908006190	O-succinylbenzoate-CoA ligase; Region: menE; TIGR01923
862908006191	acyl-activating enzyme (AAE) consensus motif; other site
862908006192	AMP binding site [chemical binding]; other site
862908006193	active site
862908006194	CoA binding site [chemical binding]; other site
862908006195	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Region: menH_SHCHC; TIGR03695
862908006196	HMMPfam hit to PF00561, Alpha/beta hydrolase fold, score 6.2e-07
862908006197	HMMPfam hit to PF00501, AMP-dependent synthetase and ligase, score 2e-07
862908006198	DNA Polymerase IV/Kappa; Region: PolY_Pol_IV_kappa; cd03586
862908006199	active site
862908006200	DNA polymerase IV; Validated; Region: PRK02406
862908006201	DNA binding site [nucleotide binding]
862908006202	HMMPfam hit to PF00817, UMUC-like DNA-repair protein, score 2.1e-83
862908006203	LexA DNA binding domain; Region: LexA_DNA_bind; pfam01726
862908006204	LexA repressor; Validated; Region: PRK00215
862908006205	Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC...; Region: S24_LexA-like; cd06529
862908006206	Catalytic site [active]
862908006207	HMMPfam hit to PF00717, Peptidase S24, S26A and S26B, score 6.4e-16
862908006208	HMMPfam hit to PF01726, LexA DNA-binding region, score 1.1e-07
862908006209	Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]; Region: MscS; COG0668
862908006210	Mechanosensitive ion channel; Region: MS_channel; pfam00924
862908006211	3 probable transmembrane helices predicted for BMS1652 by TMHMM2.0 at aa 35-57, 77-96 and 106-128
862908006212	HMMPfam hit to PF00924, MscS Mechanosensitive ion channel, score 2.3e-13
862908006213	Signal peptide predicted for BMS1653 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.525 between residues 21 and 22
862908006214	C factor cell-cell signaling protein; Provisional; Region: PRK09009
862908006215	carbonyl reductase sniffer-like, classical (c) SDRs; Region: carb_red_sniffer_like_SDR_c; cd05325
862908006216	NADP binding site [chemical binding]; other site
862908006217	homodimer interface [polypeptide binding]; other site
862908006218	active site
862908006219	HMMPfam hit to PF00106, Short-chain dehydrogenase/reductase SDR, score 6.4e-08
862908006220	esterase, PHB depolymerase family; Region: esterase_phb; TIGR01840
862908006221	Signal peptide predicted for BMS1655 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 between residues 32 and 33
862908006222	Signal peptide predicted for BMS1656 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.995 between residues 20 and 21
862908006223	Signal peptide predicted for BMS1657 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.602 between residues 25 and 26
862908006224	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006225	Signal peptide predicted for BMS1658 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.545 between residues 17 and 18
862908006226	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006227	O-succinylbenzoate synthase; Provisional; Region: PRK02714
862908006228	Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion; Region: enolase_like; cl17188
862908006229	metal binding site [ion binding]; metal-binding site
862908006230	substrate binding pocket [chemical binding]; other site
862908006231	PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2.
862908006232	1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated; Region: PRK06080
862908006233	UbiA prenyltransferase family; Region: UbiA; pfam01040
862908006234	8 probable transmembrane helices predicted for BMS1660 by TMHMM2.0 at aa 38-60, 84-106, 110-132, 139-161, 171-193, 214-236, 240-257 and 269-291
862908006235	HMMPfam hit to PF01040, UbiA prenyltransferase, score 8.1e-21
862908006236	Signal peptide predicted for BMS1660 by SignalP 2.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.981 between residues 31 and 32
862908006237	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase; Validated; Region: PRK07449
862908006238	Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1- carboxylate synthase (MenD) and related proteins; Region: TPP_PYR_MenD; cd07037
862908006239	dimer interface [polypeptide binding]; other site
862908006240	tetramer interface [polypeptide binding]; other site
862908006241	PYR/PP interface [polypeptide binding]; other site
862908006242	TPP binding site [chemical binding]; other site
862908006243	Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key...; Region: TPP_SHCHC_synthase; cd02009
862908006244	TPP-binding site; other site
862908006245	HMMPfam hit to PF02776, Pyruvate decarboxylase, score 0.00067
862908006246	chorismate binding enzyme; Region: Chorismate_bind; cl10555
862908006247	HMMPfam hit to PF00425, Anthranilate synthase component I and chorismate binding protein, score 4e-42
862908006248	Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226
862908006249	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908006250	S-adenosylmethionine binding site [chemical binding]; other site
862908006251	HMMPfam hit to PF01209, UbiE/COQ5 methyltransferase, score 2.1e-55
862908006252	Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]; Region: IspA; COG0142
862908006253	Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685
862908006254	substrate binding pocket [chemical binding]; other site
862908006255	chain length determination region; other site
862908006256	substrate-Mg2+ binding site; other site
862908006257	catalytic residues [active]
862908006258	aspartate-rich region 1; other site
862908006259	active site lid residues [active]
862908006260	aspartate-rich region 2; other site
862908006261	PS00430 TonB-dependent receptor proteins signature 1.
862908006262	HMMPfam hit to PF00348, Polyprenyl synthetase, score 3e-30
862908006263	Signal peptide predicted for BMS1665 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.981 between residues 24 and 25
862908006264	proline aminopeptidase P II; Provisional; Region: PRK10879
862908006265	Aminopeptidase P, N-terminal domain; Region: AMP_N; pfam05195
862908006266	Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on...; Region: Prolidase; cd01087
862908006267	active site
862908006268	HMMPfam hit to PF00557, Peptidase M24, score 3.6e-75
862908006269	PS00491 Aminopeptidase P and proline dipeptidase signature.
862908006270	HMMPfam hit to PF05195, Peptidase M24B, X-Pro dipeptidase/aminopeptidase N-terminal, score 9.2e-38
862908006271	Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers; Region: pyrophosphatase; cd00412
862908006272	dimer interface [polypeptide binding]; other site
862908006273	substrate binding site [chemical binding]; other site
862908006274	metal binding sites [ion binding]; metal-binding site
862908006275	HMMPfam hit to PF00719, Inorganic pyrophosphatase, score 4.5e-64
862908006276	Signal peptide predicted for BMS1668 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.758 between residues 19 and 20
862908006277	BCCT family transporter; Region: BCCT; pfam02028
862908006278	HMMPfam hit to PF02028, BCCT transporter, score 3.9e-212
862908006279	12 probable transmembrane helices predicted for BMS1669 by TMHMM2.0 at aa 13-31, 46-68, 89-111, 139-161, 190-212, 227-249, 256-278, 311-333, 346-365, 399-421, 446-468 and 472-491
862908006280	PS01303 BCCT family of transporters signature.
862908006281	Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]; Region: LysS; COG1384
862908006282	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
862908006283	active site
862908006284	nucleotide binding site [chemical binding]; other site
862908006285	HIGH motif; other site
862908006286	KMSKS motif; other site
862908006287	HMMPfam hit to PF01921, Lysyl-tRNA synthetase (archaeal), class 1c, score 2.4e-199
862908006288	Signal peptide predicted for BMS1673 by SignalP 2.0 HMM (Signal peptide probability 0.955) with cleavage site probability 0.686 between residues 31 and 32
862908006289	Protein of unknown function (DUF3011); Region: DUF3011; pfam11218
862908006290	Signal peptide predicted for BMS1674 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.953 between residues 19 and 20
862908006291	PS00018 EF-hand calcium-binding domain.
862908006292	methionine aminotransferase; Validated; Region: PRK09082
862908006293	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
862908006294	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908006295	homodimer interface [polypeptide binding]; other site
862908006296	catalytic residue [active]
862908006297	HMMPfam hit to PF00155, Aminotransferase, class I and II, score 1.4e-30
862908006298	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410
862908006299	ATP-binding cassette domain of branched-chain amino acid transporter; Region: ABC_TM1139_LivF_branched; cd03224
862908006300	Walker A/P-loop; other site
862908006301	ATP binding site [chemical binding]; other site
862908006302	Q-loop/lid; other site
862908006303	ABC transporter signature motif; other site
862908006304	Walker B; other site
862908006305	D-loop; other site
862908006306	H-loop/switch region; other site
862908006307	HMMPfam hit to PF00005, ABC transporter, score 9.5e-45
862908006308	PS00211 ABC transporters family signature.
862908006309	PS00017 ATP/GTP-binding site motif A (P-loop).
862908006310	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411
862908006311	ATP-binding cassette component of branched chain amino acids transport system; Region: ABC_Mj1267_LivG_branched; cd03219
862908006312	Walker A/P-loop; other site
862908006313	ATP binding site [chemical binding]; other site
862908006314	Q-loop/lid; other site
862908006315	ABC transporter signature motif; other site
862908006316	Walker B; other site
862908006317	D-loop; other site
862908006318	H-loop/switch region; other site
862908006319	HMMPfam hit to PF00005, ABC transporter, score 7.6e-54
862908006320	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
862908006321	PS00017 ATP/GTP-binding site motif A (P-loop).
862908006322	ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]; Region: LivM; COG4177
862908006323	Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581
862908006324	TM-ABC transporter signature motif; other site
862908006325	8 probable transmembrane helices predicted for BMS1678 by TMHMM2.0 at aa 5-27, 32-54, 64-86, 93-110, 130-147, 180-199, 214-236 and 257-274
862908006326	HMMPfam hit to PF02653, Bacterial inner-membrane translocator, score 9.2e-36
862908006327	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006328	Branched-chain amino acid transport system / permease component; Region: BPD_transp_2; pfam02653
862908006329	Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582
862908006330	TM-ABC transporter signature motif; other site
862908006331	8 probable transmembrane helices predicted for BMS1679 by TMHMM2.0 at aa 15-37, 42-64, 69-91, 100-122, 144-166, 196-218, 233-266 and 273-292
862908006332	HMMPfam hit to PF02653, Bacterial inner-membrane translocator, score 4.7e-46
862908006333	PS00678 Trp-Asp (WD) repeats signature.
862908006334	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
862908006335	Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions; Region: PBP1_ABC_ligand_binding_like_12; cd06347
862908006336	putative ligand binding site [chemical binding]; other site
862908006337	HMMPfam hit to PF01094, Extracellular ligand-binding receptor, score 4.2e-46
862908006338	Signal peptide predicted for BMS1680 by SignalP 2.0 HMM (Signal peptide probability 0.952) with cleavage site probability 0.761 between residues 46 and 47
862908006339	Protein of unknown function (DUF1343); Region: DUF1343; pfam07075
862908006340	HMMPfam hit to PF07075, Uncharacterised conserved protein UCP016719, score 2.2e-116
862908006341	thymidylate synthase; Reviewed; Region: thyA; PRK01827
862908006342	Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the...; Region: TS_Pyrimidine_HMase; cd00351
862908006343	dimerization interface [polypeptide binding]; other site
862908006344	active site
862908006345	HMMPfam hit to PF00303, Thymidylate synthase, score 2.3e-178
862908006346	PS00091 Thymidylate synthase active site.
862908006347	Dihydrofolate reductase [Coenzyme metabolism]; Region: FolA; COG0262
862908006348	Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5; Region: DHFR; cd00209
862908006349	NADP+ binding site [chemical binding]; other site
862908006350	folate binding site [chemical binding]; other site
862908006351	HMMPfam hit to PF00186, Dihydrofolate reductase, score 1.2e-10
862908006352	Maf-like protein; Region: Maf; pfam02545
862908006353	Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555
862908006354	active site
862908006355	dimer interface [polypeptide binding]; other site
862908006356	HMMPfam hit to PF02545, Maf-like protein, score 5.2e-43
862908006357	FecR protein; Region: FecR; pfam04773
862908006358	Signal peptide predicted for BMS1689 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 between residues 18 and 19
862908006359	putative addiction module killer protein; Region: upstrm_HI1419; TIGR02683
862908006360	HMMPfam hit to PF05973, Bacterial protein of unknown function DUF891, score 1.8e-15
862908006361	PS00228 Tubulin-beta mRNA autoregulation signal.
862908006362	ribonucleoside--diphosphate reductase large subunit; Region: PLN02437
862908006363	ATP cone domain; Region: ATP-cone; pfam03477
862908006364	Class I ribonucleotide reductase; Region: RNR_I; cd01679
862908006365	active site
862908006366	dimer interface [polypeptide binding]; other site
862908006367	catalytic residues [active]
862908006368	effector binding site; other site
862908006369	R2 peptide binding site; other site
862908006370	HMMPfam hit to PF02867, Ribonucleotide reductase large subunit, score 0
862908006371	PS00089 Ribonucleotide reductase large subunit signature.
862908006372	HMMPfam hit to PF00317, Ribonucleotide reductase large subunit, score 4.6e-33
862908006373	HMMPfam hit to PF03477, ATP-cone, score 1.7e-17
862908006374	Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; Region: RNRR2; cd01049
862908006375	dimer interface [polypeptide binding]; other site
862908006376	putative radical transfer pathway; other site
862908006377	diiron center [ion binding]; other site
862908006378	tyrosyl radical; other site
862908006379	HMMPfam hit to PF00268, Ribonucleotide reductase, score 5.2e-139
862908006380	1 probable transmembrane helix predicted for BMS1695 by TMHMM2.0 at aa 155-177
862908006381	PS00368 Ribonucleotide reductase small subunit signature.
862908006382	Domain of unknown function DUF21; Region: DUF21; pfam01595
862908006383	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
862908006384	HMMPfam hit to PF00571, CBS, score 8.4e-06
862908006385	HMMPfam hit to PF00571, CBS, score 0.03
862908006386	HMMPfam hit to PF01595, Protein of unknown function DUF21, score 2.5e-20
862908006387	3 probable transmembrane helices predicted for BMS1696 by TMHMM2.0 at aa 4-26, 82-104 and 119-141
862908006388	Signal peptide predicted for BMS1696 by SignalP 2.0 HMM (Signal peptide probability 0.953) with cleavage site probability 0.728 between residues 23 and 24
862908006389	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
862908006390	active site
862908006391	DNA binding site [nucleotide binding]
862908006392	Int/Topo IB signature motif; other site
862908006393	HMMPfam hit to PF00589, Phage integrase, score 8.4e-16
862908006394	HMMPfam hit to PF02899, Phage integrase, N-terminal SAM-like, score 0.00089
862908006395	Protein related to penicillin acylase [General function prediction only]; Region: COG2366
862908006396	Penicillin G acylase (PGA) belongs to a family of beta-lactam acylases that includes cephalosporin acylase (CA) and aculeacin A acylase. PGA and CA are crucial for the production of backbone chemicals like 6-aminopenicillanic acid and...; Region: Ntn_PGA_like; cd03747
862908006397	active site
862908006398	HMMPfam hit to PF01804, Peptidase S45, penicillin amidase, score 2.6e-43
862908006399	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
862908006400	putative acyl-acceptor binding pocket; other site
862908006401	HMMPfam hit to PF01553, Phospholipid/glycerol acyltransferase, score 5.1e-44
862908006402	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557
862908006403	1 probable transmembrane helix predicted for BMS1702 by TMHMM2.0 at aa 13-35
862908006404	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006405	Site-specific recombinase XerD [DNA replication, recombination, and repair]; Region: XerD; COG4974
862908006406	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
862908006407	active site
862908006408	DNA binding site [nucleotide binding]
862908006409	Int/Topo IB signature motif; other site
862908006410	HMMPfam hit to PF00589, Phage integrase, score 5.4e-14
862908006411	HMMPfam hit to PF02899, Phage integrase, N-terminal SAM-like, score 0.0037
862908006412	1 probable transmembrane helix predicted for BMS1705 by TMHMM2.0 at aa 46-68
862908006413	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cl15377
862908006414	Lysine 2,3-aminomutase [Amino acid transport and metabolism]; Region: KamA; COG1509
862908006415	HMMPfam hit to PF04055, Radical SAM, score 0.00098
862908006416	1 probable transmembrane helix predicted for BMS1707 by TMHMM2.0 at aa 15-37
862908006417	1 probable transmembrane helix predicted for BMS1708 by TMHMM2.0 at aa 27-49
862908006418	1 probable transmembrane helix predicted for BMS1709 by TMHMM2.0 at aa 7-28
862908006419	Signal peptide predicted for BMS1709 by SignalP 2.0 HMM (Signal peptide probability 0.773) with cleavage site probability 0.443 between residues 22 and 23
862908006420	Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]; Region: TldD; COG0312
862908006421	HMMPfam hit to PF01523, Peptidase U62, modulator of DNA gyrase, score 4.1e-36
862908006422	Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only]; Region: TldD; COG0312
862908006423	HMMPfam hit to PF01523, Peptidase U62, modulator of DNA gyrase, score 3.2e-64
862908006424	Ion channel; Region: Ion_trans_2; pfam07885
862908006425	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
862908006426	ligand binding site [chemical binding]; other site
862908006427	flexible hinge region; other site
862908006428	HMMPfam hit to PF00027, Cyclic nucleotide-binding, score 7.3e-27
862908006429	PS00888 Cyclic nucleotide-binding domain signature 1.
862908006430	6 probable transmembrane helices predicted for BMS1712 by TMHMM2.0 at aa 13-35, 45-64, 84-106, 141-160, 181-203 and 207-229
862908006431	HMMPfam hit to PF00520, Ion transport protein, score 1e-15
862908006432	Signal peptide predicted for BMS1712 by SignalP 2.0 HMM (Signal peptide probability 0.675) with cleavage site probability 0.339 between residues 36 and 37
862908006433	heat shock protein HtpX; Provisional; Region: PRK05457
862908006434	HMMPfam hit to PF06509, HtpX, N-terminal, score 2.9e-32
862908006435	4 probable transmembrane helices predicted for BMS1713 by TMHMM2.0 at aa 5-27, 37-59, 157-179 and 194-216
862908006436	HMMPfam hit to PF01435, Peptidase M48, Ste24p, score 1.2e-39
862908006437	DNA modification methylase [DNA replication, recombination, and repair]; Region: COG0863
862908006438	DNA methylase; Region: N6_N4_Mtase; pfam01555
862908006439	HMMPfam hit to PF01555, DNA methylase N-4/N-6, score 2.5e-14
862908006440	PS00092 N-6 Adenine-specific DNA methylases signature.
862908006441	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
862908006442	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
862908006443	substrate binding pocket [chemical binding]; other site
862908006444	membrane-bound complex binding site; other site
862908006445	hinge residues; other site
862908006446	putative enoyl-[acyl-carrier-protein] reductase II; Region: enACPred_II; TIGR03151
862908006447	2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase...; Region: NPD_like; cd04730
862908006448	FMN binding site [chemical binding]; other site
862908006449	substrate binding site [chemical binding]; other site
862908006450	putative catalytic residue [active]
862908006451	HMMPfam hit to PF03060, 2-nitropropane dioxygenase, NPD, score 4.1e-81
862908006452	c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]; Region: COG2206
862908006453	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl17215
862908006454	S-adenosyl-L-methionine-dependent methyltransferase; Region: Methyltransf_30; cl17711
862908006455	Signal peptide predicted for BMS1720 by SignalP 2.0 HMM (Signal peptide probability 0.666) with cleavage site probability 0.252 between residues 20 and 21
862908006456	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006457	Signal peptide predicted for BMS1722 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.962 between residues 18 and 19
862908006458	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
862908006459	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
862908006460	active site
862908006461	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal, score 1.3e-47
862908006462	PS00073 Acyl-CoA dehydrogenases signature 2.
862908006463	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, central region, score 3.7e-17
862908006464	1 probable transmembrane helix predicted for BMS1724 by TMHMM2.0 at aa 7-26
862908006465	Signal peptide predicted for BMS1724 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.971 between residues 25 and 26
862908006466	Signal peptide predicted for BMS1726 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.446 between residues 18 and 19
862908006467	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006468	Predicted membrane protein [Function unknown]; Region: COG2259
862908006469	4 probable transmembrane helices predicted for BMS1727 by TMHMM2.0 at aa 7-24, 44-66, 71-90 and 100-119
862908006470	HMMPfam hit to PF07681, , score 2.7e-24
862908006471	Signal peptide predicted for BMS1727 by SignalP 2.0 HMM (Signal peptide probability 0.764) with cleavage site probability 0.294 between residues 23 and 24
862908006472	DTW domain; Region: DTW; cl01221
862908006473	HMMPfam hit to PF03942, DTW, score 1.2e-27
862908006474	1 probable transmembrane helix predicted for BMS1729 by TMHMM2.0 at aa 17-39
862908006475	Signal peptide predicted for BMS1731 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.432 between residues 19 and 20
862908006476	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006477	Signal peptide predicted for BMS1732 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.956 between residues 20 and 21
862908006478	Signal peptide predicted for BMS1733 by SignalP 2.0 HMM (Signal peptide probability 0.890) with cleavage site probability 0.841 between residues 18 and 19
862908006479	Signal peptide predicted for BMS1734 by SignalP 2.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.720 between residues 18 and 19
862908006480	Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein; Region: Hint; cd00081
862908006481	protein-splicing catalytic site; other site
862908006482	thioester formation/cholesterol transfer; other site
862908006483	Peptidase domain in the S8 and S53 families; Region: Peptidases_S8_S53; cl10459
862908006484	active site
862908006485	catalytic residues [active]
862908006486	PS00017 ATP/GTP-binding site motif A (P-loop).
862908006487	Signal peptide predicted for BMS1737 by SignalP 2.0 HMM (Signal peptide probability 0.838) with cleavage site probability 0.559 between residues 22 and 23
862908006488	Leucine Rich repeats (2 copies); Region: LRR_4; pfam12799
862908006489	Galactose oxidase, central domain; Region: Kelch_3; cl02701
862908006490	Kelch motif; Region: Kelch_1; pfam01344
862908006491	Galactose oxidase, central domain; Region: Kelch_4; pfam13418
862908006492	Galactose oxidase, central domain; Region: Kelch_4; pfam13418
862908006493	Kelch motif; Region: Kelch_6; pfam13964
862908006494	Signal peptide predicted for BMS1738 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.997 between residues 19 and 20
862908006495	HMMPfam hit to PF00560, Leucine-rich repeat, score 0.085
862908006496	HMMPfam hit to PF00560, Leucine-rich repeat, score 20
862908006497	HMMPfam hit to PF00560, Leucine-rich repeat, score 0.87
862908006498	HMMPfam hit to PF00560, Leucine-rich repeat, score 31
862908006499	HMMPfam hit to PF01344, Kelch repeat, score 0.75
862908006500	HMMPfam hit to PF01344, Kelch repeat, score 0.1
862908006501	HMMPfam hit to PF01344, Kelch repeat, score 0.0014; HMMPfam hit to PF07646, Kelch, score 0.13
862908006502	HMMPfam hit to PF07646, Kelch, score 0.02
862908006503	HMMPfam hit to PF01344, Kelch repeat, score 0.00053
862908006504	HMMPfam hit to PF01344, Kelch repeat, score 0.27
862908006505	aspartate-semialdehyde dehydrogenase; Reviewed; Region: PRK06598
862908006506	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; smart00859
862908006507	HMMPfam hit to PF02774, Semialdehyde dehydrogenase, score 6.8e-61
862908006508	PS01103 Aspartate-semialdehyde dehydrogenase signature.
862908006509	HMMPfam hit to PF01118, Semialdehyde dehydrogenase, score 3.6e-30
862908006510	aspartate kinase III; Validated; Region: PRK09084
862908006511	Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that...; Region: AAK; cl00452
862908006512	nucleotide binding site [chemical binding]; other site
862908006513	substrate binding site [chemical binding]; other site
862908006514	ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII; Region: ACT_AKiii-LysC-EC_1; cd04932
862908006515	lysine allosteric regulatory site; other site
862908006516	dimer interface [polypeptide binding]; other site
862908006517	ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Region: ACT; cl09141
862908006518	HMMPfam hit to PF00696, Aspartate/glutamate/uridylate kinase, score 2.7e-45
862908006519	PS00324 Aspartokinase signature.
862908006520	HMMPfam hit to PF01842, Amino acid-binding ACT, score 0.0038
862908006521	dihydrodipicolinate reductase; Provisional; Region: PRK00048
862908006522	Dihydrodipicolinate reductase, C-terminus; Region: DapB_C; pfam05173
862908006523	PS00017 ATP/GTP-binding site motif A (P-loop).
862908006524	HMMPfam hit to PF05173, Dihydrodipicolinate reductase, score 6.1e-20
862908006525	Dihydrodipicolinate synthase (DHDPS); Region: DHDPS; cd00950
862908006526	dihydrodipicolinate synthase; Region: dapA; TIGR00674
862908006527	dimer interface [polypeptide binding]; other site
862908006528	active site
862908006529	catalytic residue [active]
862908006530	HMMPfam hit to PF00701, Dihydrodipicolinate synthetase, score 4.9e-37
862908006531	PS00665 Dihydrodipicolinate synthetase signature 1.
862908006532	2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional; Region: dapD; PRK11830
862908006533	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA; Region: LbH_THP_succinylT; cd03350
862908006534	trimer interface [polypeptide binding]; other site
862908006535	active site
862908006536	substrate binding site [chemical binding]; other site
862908006537	CoA binding site [chemical binding]; other site
862908006538	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 35
862908006539	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 19
862908006540	PS00101 Hexapeptide-repeat containing-transferases signature.
862908006541	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 0.2
862908006542	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 0.18
862908006543	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 9
862908006544	Diaminopimelate decarboxylase [Amino acid transport and metabolism]; Region: LysA; COG0019
862908006545	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes; Region: PLPDE_III_ODC_DapDC_like; cd06810
862908006546	active site
862908006547	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
862908006548	dimer interface [polypeptide binding]; other site
862908006549	catalytic residues [active]
862908006550	substrate binding site [chemical binding]; other site
862908006551	HMMPfam hit to PF02784, Orn/DAP/Arg decarboxylase 2, score 1.1e-16
862908006552	PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2.
862908006553	HMMPfam hit to PF00278, Orn/DAP/Arg decarboxylase 2, score 2.9e-16
862908006554	M14 family of metallocarboxypeptidases and related proteins; Region: Peptidase_M14_like; cl11393
862908006555	Succinylglutamate desuccinylase / Aspartoacylase family; Region: AstE_AspA; pfam04952
862908006556	active site
862908006557	Zn binding site [ion binding]; other site
862908006558	HMMPfam hit to PF04952, Succinylglutamate desuccinylase/aspartoacylase, score 2.2e-20
862908006559	Signal peptide predicted for BMS1749 by SignalP 2.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.920 between residues 21 and 22
862908006560	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl17200
862908006561	PS00435 Peroxidases proximal heme-ligand signature.
862908006562	Signal peptide predicted for BMS1751 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.832 between residues 26 and 27
862908006563	Signal peptide predicted for BMS1752 by SignalP 2.0 HMM (Signal peptide probability 0.968) with cleavage site probability 0.966 between residues 20 and 21
862908006564	Protein of unknown function (DUF3419); Region: DUF3419; cl15422
862908006565	Predicted dehydrogenase [General function prediction only]; Region: COG5322
862908006566	Shikimate / quinate 5-dehydrogenase; Region: Shikimate_DH; pfam01488
862908006567	Pseudomonas fluorescens MupV-like, extended (e) SDRs; Region: MupV_like_SDR_e; cd05263
862908006568	putative NAD(P) binding site [chemical binding]; other site
862908006569	active site
862908006570	putative substrate binding site [chemical binding]; other site
862908006571	putative lipid kinase; Reviewed; Region: PRK00861
862908006572	Diacylglycerol kinase catalytic domain; Region: DAGK_cat; pfam00781
862908006573	Zinc-binding domain; Region: zf-3CxxC; pfam13695
862908006574	Signal peptide predicted for BMS1757 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.940 between residues 27 and 28
862908006575	Signal peptide predicted for BMS1758 by SignalP 2.0 HMM (Signal peptide probability 0.969) with cleavage site probability 0.918 between residues 16 and 17
862908006576	FOG: PKD repeat [General function prediction only]; Region: COG3291
862908006577	polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is...; Region: PKD; cl17457
862908006578	FOG: PKD repeat [General function prediction only]; Region: COG3291
862908006579	polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is...; Region: PKD; cl17457
862908006580	FOG: PKD repeat [General function prediction only]; Region: COG3291
862908006581	polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is...; Region: PKD; cd00146
862908006582	Signal peptide predicted for BMS1760 by SignalP 2.0 HMM (Signal peptide probability 0.971) with cleavage site probability 0.636 between residues 21 and 22
862908006583	thiopurine S-methyltransferase; Reviewed; Region: PRK13255
862908006584	HMMPfam hit to PF05724, Thiopurine S-methyltransferase, score 8.8e-41
862908006585	Putative silver efflux pump [Inorganic ion transport and metabolism]; Region: COG3696
862908006586	HMMPfam hit to PF00873, Acriflavin resistance protein, score 1.4e-277
862908006587	12 probable transmembrane helices predicted for BMS1764 by TMHMM2.0 at aa 13-30, 336-358, 365-387, 397-419, 442-464, 479-501, 529-551, 868-887, 894-916, 920-942, 971-990 and 1005-1027
862908006588	Signal peptide predicted for BMS1764 by SignalP 2.0 HMM (Signal peptide probability 0.955) with cleavage site probability 0.376 between residues 32 and 33
862908006589	Membrane Fusion Protein cluster 2 (function with RND porters); Region: 8a0102; TIGR00999
862908006590	HlyD family secretion protein; Region: HlyD_3; pfam13437
862908006591	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006592	Signal peptide predicted for BMS1766 by SignalP 2.0 HMM (Signal peptide probability 0.792) with cleavage site probability 0.479 between residues 16 and 17
862908006593	Peptidase domain in the S8 and S53 families; Region: Peptidases_S8_S53; cl10459
862908006594	Peptidase domain in the S8 and S53 families; Region: Peptidases_S8_S53; cl10459
862908006595	catalytic residues [active]
862908006596	HMMPfam hit to PF00082, Peptidase S8 and S53, subtilisin, kexin, sedolisin, score 5.1e-10
862908006597	Signal peptide predicted for BMS1767 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.944 between residues 18 and 19
862908006598	Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052
862908006599	D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH); Region: GDH; cd05301
862908006600	dimerization interface [polypeptide binding]; other site
862908006601	ligand binding site [chemical binding]; other site
862908006602	NADP binding site [chemical binding]; other site
862908006603	catalytic site [active]
862908006604	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region, score 5.8e-22
862908006605	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding, score 5.6e-50
862908006606	PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.
862908006607	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
862908006608	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908006609	active site
862908006610	phosphorylation site [posttranslational modification]
862908006611	intermolecular recognition site; other site
862908006612	dimerization interface [polypeptide binding]; other site
862908006613	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
862908006614	DNA binding site [nucleotide binding]
862908006615	HMMPfam hit to PF00072, Response regulator receiver, score 2.1e-30
862908006616	HMMPfam hit to PF00486, Transcriptional regulatory protein, C-terminal, score 1.3e-17
862908006617	Response regulator receiver domain; Region: Response_reg; pfam00072
862908006618	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908006619	active site
862908006620	phosphorylation site [posttranslational modification]
862908006621	intermolecular recognition site; other site
862908006622	dimerization interface [polypeptide binding]; other site
862908006623	HMMPfam hit to PF00072, Response regulator receiver, score 1.9e-17
862908006624	type VII secretion-associated serine protease mycosin; Region: T7SS_mycosin; TIGR03921
862908006625	Peptidase S8 family domain, uncharacterized subfamily 13; Region: Peptidases_S8_13; cd07496
862908006626	active site
862908006627	catalytic triad [active]
862908006628	1 probable transmembrane helix predicted for BMS1772 by TMHMM2.0 at aa 481-500
862908006629	HMMPfam hit to PF00082, Peptidase S8 and S53, subtilisin, kexin, sedolisin, score 2.4e-74
862908006630	PS00138 Serine proteases, subtilase family, serine active site.
862908006631	PS00137 Serine proteases, subtilase family, histidine active site.
862908006632	PS00136 Serine proteases, subtilase family, aspartic acid active site.
862908006633	Signal peptide predicted for BMS1772 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 between residues 25 and 26
862908006634	Solute carrier families 5 and 6-like; solute binding domain; Region: SLC5-6-like_sbd; cl00456
862908006635	Solute carrier families 5 and 6-like; solute binding domain; Region: SLC5-6-like_sbd; cl00456
862908006636	Na binding site [ion binding]; other site
862908006637	Signal peptide predicted for BMS1773 by SignalP 2.0 HMM (Signal peptide probability 0.983) with cleavage site probability 0.576 between residues 21 and 22
862908006638	10 probable transmembrane helices predicted for BMS1773 by TMHMM2.0 at aa 69-91, 111-128, 141-163, 173-195, 208-230, 250-272, 333-352, 357-379, 386-404 and 419-441
862908006639	Calcineurin-like phosphoesterase superfamily domain; Region: Metallophos_2; pfam12850
862908006640	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
862908006641	active site
862908006642	PS00673 Serine proteases, V8 family, serine active site.
862908006643	PS00134 Serine proteases, trypsin family, histidine active site.
862908006644	Signal peptide predicted for BMS1775 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.857 between residues 21 and 22
862908006645	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
862908006646	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]; Region: DegQ; COG0265
862908006647	PS00134 Serine proteases, trypsin family, histidine active site.
862908006648	Signal peptide predicted for BMS1777 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.789 between residues 22 and 23
862908006649	Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH).  DHPS, a...; Region: Pterin_binding; cl00219
862908006650	substrate binding pocket [chemical binding]; other site
862908006651	inhibitor binding site; inhibition site
862908006652	HMMPfam hit to PF00809, Dihydropteroate synthase, DHPS, score 1.5e-16
862908006653	FtsH Extracellular; Region: FtsH_ext; pfam06480
862908006654	ATP-dependent metalloprotease FtsH; Region: FtsH_fam; TIGR01241
862908006655	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908006656	Walker A motif; other site
862908006657	ATP binding site [chemical binding]; other site
862908006658	Walker B motif; other site
862908006659	arginine finger; other site
862908006660	Peptidase family M41; Region: Peptidase_M41; pfam01434
862908006661	HMMPfam hit to PF01434, Peptidase M41, score 1.7e-103
862908006662	HMMPfam hit to PF00004, AAA ATPase, central region, score 2e-95
862908006663	PS00674 AAA-protein family signature.
862908006664	PS00017 ATP/GTP-binding site motif A (P-loop).
862908006665	HMMPfam hit to PF06480, Peptidase M41, FtsH extracellular, score 3.5e-26
862908006666	2 probable transmembrane helices predicted for BMS1779 by TMHMM2.0 at aa 7-24 and 105-127
862908006667	Signal peptide predicted for BMS1779 by SignalP 2.0 HMM (Signal peptide probability 0.969) with cleavage site probability 0.554 between residues 26 and 27
862908006668	tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]; Region: MesJ; COG0037
862908006669	N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases...; Region: PP-ATPase; cd01992
862908006670	Ligand Binding Site [chemical binding]; other site
862908006671	PS00017 ATP/GTP-binding site motif A (P-loop).
862908006672	HMMPfam hit to PF01171, PP-loop, score 6.1e-52
862908006673	2 probable transmembrane helices predicted for BMS1781 by TMHMM2.0 at aa 7-29 and 39-61
862908006674	Predicted transcriptional regulator [Transcription]; Region: COG4190
862908006675	Signal peptide predicted for BMS1786 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.989 between residues 18 and 19
862908006676	Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]; Region: LdhA; COG1052
862908006677	Putative D-isomer specific 2-hydroxyacid dehydrogenases; Region: 2-Hacid_dh_6; cd12165
862908006678	putative ligand binding site [chemical binding]; other site
862908006679	NAD binding site [chemical binding]; other site
862908006680	dimer interface [polypeptide binding]; other site
862908006681	putative catalytic site [active]
862908006682	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding, score 4.6e-25
862908006683	4 probable transmembrane helices predicted for BMS1788 by TMHMM2.0 at aa 7-29, 42-64, 77-99 and 104-126
862908006684	Signal peptide predicted for BMS1788 by SignalP 2.0 HMM (Signal peptide probability 0.631) with cleavage site probability 0.347 between residues 29 and 30
862908006685	Signal peptide predicted for BMS1789 by SignalP 2.0 HMM (Signal peptide probability 0.812) with cleavage site probability 0.403 between residues 31 and 32
862908006686	ASCH domain; Region: ASCH; pfam04266
862908006687	Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064
862908006688	Cinnamyl alcohol dehydrogenases (CAD); Region: CAD1; cd05283
862908006689	putative NAD(P) binding site [chemical binding]; other site
862908006690	putative substrate binding site [chemical binding]; other site
862908006691	catalytic Zn binding site [ion binding]; other site
862908006692	structural Zn binding site [ion binding]; other site
862908006693	dimer interface [polypeptide binding]; other site
862908006694	HMMPfam hit to PF00107, Zinc-containing alcohol dehydrogenase superfamily, score 7.9e-94
862908006695	PS00059 Zinc-containing alcohol dehydrogenases signature.
862908006696	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
862908006697	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
862908006698	salt bridge; other site
862908006699	non-specific DNA binding site [nucleotide binding]; other site
862908006700	sequence-specific DNA binding site [nucleotide binding]; other site
862908006701	Uncharacterized ACR, COG2135; Region: DUF159; pfam02586
862908006702	Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC...; Region: S24_LexA-like; cd06529
862908006703	Catalytic site [active]
862908006704	HMMPfam hit to PF00717, Peptidase S24, S26A and S26B, score 1.8e-14
862908006705	DNA polymerase V subunit UmuC; Reviewed; Region: umuC; PRK03609
862908006706	umuC subunit of DNA Polymerase V; Region: PolY_Pol_V_umuC; cd01700
862908006707	active site
862908006708	DNA binding site [nucleotide binding]
862908006709	Domain of unknown function (DUF4113); Region: DUF4113; pfam13438
862908006710	HMMPfam hit to PF00817, UMUC-like DNA-repair protein, score 6.1e-98
862908006711	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cl17915
862908006712	active site
862908006713	motif I; other site
862908006714	motif II; other site
862908006715	Signal peptide predicted for BMS1798 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.385 between residues 29 and 30
862908006716	Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633
862908006717	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
862908006718	catalytic loop [active]
862908006719	iron binding site [ion binding]; other site
862908006720	HMMPfam hit to PF00111, Ferredoxin, score 2.1e-11
862908006721	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
862908006722	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638
862908006723	Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable...; Region: Rieske_RO_Alpha_N; cd03469
862908006724	[2Fe-2S] cluster binding site [ion binding]; other site
862908006725	HMMPfam hit to PF00355, Rieske [2Fe-2S] region, score 1.7e-22
862908006726	Sterol desaturase [Lipid metabolism]; Region: ERG3; COG3000
862908006727	Fatty acid hydroxylase superfamily; Region: FA_hydroxylase; pfam04116
862908006728	4 probable transmembrane helices predicted for BMS1802 by TMHMM2.0 at aa 5-21, 41-63, 73-95 and 128-147
862908006729	2 probable transmembrane helices predicted for BMS1804 by TMHMM2.0 at aa 7-29 and 68-90
862908006730	GH3 auxin-responsive promoter; Region: GH3; pfam03321
862908006731	HMMPfam hit to PF03321, GH3 auxin-responsive promoter, score 5.6e-12
862908006732	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638
862908006733	Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes; Region: Rieske; cl00938
862908006734	iron-sulfur cluster [ion binding]; other site
862908006735	[2Fe-2S] cluster binding site [ion binding]; other site
862908006736	HMMPfam hit to PF00355, Rieske [2Fe-2S] region, score 2.1e-21
862908006737	Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Region: Ferritin_like; cd00657
862908006738	dinuclear metal binding motif [ion binding]; other site
862908006739	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]; Region: HcaE; COG4638
862908006740	Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable...; Region: Rieske_RO_Alpha_N; cd03469
862908006741	[2Fe-2S] cluster binding site [ion binding]; other site
862908006742	HMMPfam hit to PF00355, Rieske [2Fe-2S] region, score 2.9e-25
862908006743	Signal peptide predicted for BMS1810 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.963 between residues 24 and 25
862908006744	Signal peptide predicted for BMS1811 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.620 between residues 23 and 24
862908006745	PS00588 Flagella basal body rod proteins signature.
862908006746	Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the...; Region: KAZAL_FS; cd00104
862908006747	Signal peptide predicted for BMS1812 by SignalP 2.0 HMM (Signal peptide probability 0.616) with cleavage site probability 0.281 between residues 22 and 23
862908006748	HMMPfam hit to PF00050, Proteinase inhibitor I1, Kazal, score 0.001
862908006749	HMMPfam hit to PF07648, Protease inhibitor, Kazal-type, score 5.1e-07
862908006750	PS00282 Kazal serine protease inhibitors family signature.
862908006751	Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665
862908006752	Transcriptional accessory protein [Transcription]; Region: Tex; COG2183
862908006753	Tex-like protein N-terminal domain; Region: Tex_N; pfam09371
862908006754	Likely ribonuclease with RNase H fold; Region: YqgFc; smart00732
862908006755	S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression; Region: S1_Tex; cd05685
862908006756	RNA binding site [nucleotide binding]; other site
862908006757	HMMPfam hit to PF00575, RNA binding S1, score 1.3e-23
862908006758	Bacterial membrane protein YfhO; Region: YfhO; pfam09586
862908006759	Signal peptide predicted for BMS1815 by SignalP 2.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.856 between residues 28 and 29
862908006760	9 probable transmembrane helices predicted for BMS1815 by TMHMM2.0 at aa 7-26, 82-104, 117-136, 175-197, 204-226, 267-285, 292-314, 334-356 and 633-652
862908006761	SMP-30/Gluconolaconase/LRE-like region; Region: SGL; pfam08450
862908006762	Signal peptide predicted for BMS1817 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.694 between residues 27 and 28
862908006763	Signal peptide predicted for BMS1818 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.999 between residues 20 and 21
862908006764	Signal peptide predicted for BMS1819 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 18 and 19
862908006765	ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]; Region: LolE; COG4591
862908006766	4 probable transmembrane helices predicted for BMS1820 by TMHMM2.0 at aa 21-43, 254-276, 302-324 and 352-374
862908006767	Signal peptide predicted for BMS1820 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.250 between residues 41 and 42
862908006768	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
862908006769	multifunctional fatty acid oxidation complex subunit alpha; Reviewed; Region: fadJ; PRK11154
862908006770	substrate binding site [chemical binding]; other site
862908006771	oxyanion hole (OAH) forming residues; other site
862908006772	trimer interface [polypeptide binding]; other site
862908006773	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
862908006774	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
862908006775	HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, score 1.2e-38
862908006776	PS00067 3-hydroxyacyl-CoA dehydrogenase signature.
862908006777	HMMPfam hit to PF02737, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding, score 1.2e-68
862908006778	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase, score 6e-50
862908006779	acetyl-CoA acetyltransferase; Provisional; Region: PRK08170
862908006780	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
862908006781	dimer interface [polypeptide binding]; other site
862908006782	active site
862908006783	HMMPfam hit to PF02803, Thiolase, score 8.6e-59
862908006784	PS00099 Thiolases active site.
862908006785	PS00737 Thiolases signature 2.
862908006786	HMMPfam hit to PF00108, Thiolase, score 5.4e-75
862908006787	Signal peptide predicted for BMS1824 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.799 between residues 25 and 26
862908006788	1 probable transmembrane helix predicted for BMS1825 by TMHMM2.0 at aa 13-30
862908006789	PS00134 Serine proteases, trypsin family, histidine active site.
862908006790	1 probable transmembrane helix predicted for BMS1827 by TMHMM2.0 at aa 12-34
862908006791	Signal peptide predicted for BMS1828 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.860 between residues 30 and 31
862908006792	Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step...; Region: TMPK; cd01672
862908006793	thymidylate kinase; Validated; Region: tmk; PRK00698
862908006794	TMP-binding site; other site
862908006795	ATP-binding site [chemical binding]; other site
862908006796	HMMPfam hit to PF02223, Thymidylate kinase, score 2.5e-47
862908006797	PS00017 ATP/GTP-binding site motif A (P-loop).
862908006798	DNA polymerase III, delta subunit; Region: DNA_pol3_delta2; pfam13177
862908006799	PSP1 C-terminal conserved region; Region: PSP1; cl00770
862908006800	HMMPfam hit to PF04468, PSP1 C-terminal conserved region, score 2.9e-23
862908006801	DNA repair exonuclease [DNA replication, recombination, and repair]; Region: SbcD; COG0420
862908006802	Mre11 nuclease, N-terminal metallophosphatase domain; Region: MPP_Mre11_N; cd00840
862908006803	active site
862908006804	metal binding site [ion binding]; metal-binding site
862908006805	DNA binding site [nucleotide binding]
862908006806	HMMPfam hit to PF00149, Metallophosphoesterase, score 1e-18
862908006807	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908006808	AAA domain; Region: AAA_23; pfam13476
862908006809	Walker A/P-loop; other site
862908006810	ATP binding site [chemical binding]; other site
862908006811	Q-loop/lid; other site
862908006812	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908006813	ABC transporter signature motif; other site
862908006814	Walker B; other site
862908006815	D-loop; other site
862908006816	H-loop/switch region; other site
862908006817	PS00017 ATP/GTP-binding site motif A (P-loop).
862908006818	asparaginyl-tRNA synthetase; Validated; Region: asnC; PRK03932
862908006819	EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB...; Region: EcAsnRS_like_N; cd04318
862908006820	putative dimer interface [polypeptide binding]; other site
862908006821	putative anticodon binding site; other site
862908006822	Asx tRNA synthetase (AspRS/AsnRS) class II core domain.  Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as...; Region: AsxRS_core; cd00776
862908006823	homodimer interface [polypeptide binding]; other site
862908006824	motif 1; other site
862908006825	motif 2; other site
862908006826	active site
862908006827	motif 3; other site
862908006828	HMMPfam hit to PF00152, tRNA synthetase, class II (D, K and N), score 3.1e-127
862908006829	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
862908006830	HMMPfam hit to PF01336, OB-fold nucleic acid binding, score 4.9e-18
862908006831	Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular...; Region: adenosine_kinase; cd01168
862908006832	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
862908006833	substrate binding site [chemical binding]; other site
862908006834	ATP binding site [chemical binding]; other site
862908006835	HMMPfam hit to PF00294, Carbohydrate kinase, PfkB, score 7.6e-44
862908006836	PS00584 pfkB family of carbohydrate kinases signature 2.
862908006837	HMMPfam hit to PF06392, Acid shock, score 90
862908006838	HMMPfam hit to PF06392, Acid shock, score 14
862908006839	Uncharacterized conserved protein [Function unknown]; Region: COG2353
862908006840	Signal peptide predicted for BMS1838 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.648 between residues 18 and 19
862908006841	HMMPfam hit to PF04264, YceI, score 2.1e-50
862908006842	2 probable transmembrane helices predicted for BMS1838 by TMHMM2.0 at aa 251-270 and 291-313
862908006843	hypothetical protein; Validated; Region: PRK02101
862908006844	HMMPfam hit to PF03883, Protein of unknown function DUF328, score 2.3e-114
862908006845	PilZ domain; Region: PilZ; pfam07238
862908006846	2 probable transmembrane helices predicted for BMS1841 by TMHMM2.0 at aa 20-42 and 68-87
862908006847	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908006848	S-adenosylmethionine binding site [chemical binding]; other site
862908006849	HMMPfam hit to PF04445, Protein of unknown function DUF548, score 1.4e-20
862908006850	glycine dehydrogenase; Provisional; Region: PRK05367
862908006851	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
862908006852	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
862908006853	catalytic residue [active]
862908006854	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
862908006855	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
862908006856	catalytic residue [active]
862908006857	HMMPfam hit to PF02347, Glycine cleavage system P-protein, score 3.5e-21
862908006858	PS00017 ATP/GTP-binding site motif A (P-loop).
862908006859	Predicted SAM-dependent methyltransferase [General function prediction only]; Region: COG2384
862908006860	Family of unknown function (DUF633); Region: DUF633; pfam04816
862908006861	5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]; Region: UshA; COG0737
862908006862	Escherichia coli UshA-like family, N-terminal metallophosphatase domain; Region: MPP_UshA_N_like; cd00845
862908006863	active site
862908006864	metal binding site [ion binding]; metal-binding site
862908006865	5'-nucleotidase, C-terminal domain; Region: 5_nucleotid_C; pfam02872
862908006866	HMMPfam hit to PF00149, Metallophosphoesterase, score 8.3e-19
862908006867	Signal peptide predicted for BMS1845 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.824 between residues 18 and 19
862908006868	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3323
862908006869	Peptidase family M48; Region: Peptidase_M48; cl12018
862908006870	Signal peptide predicted for BMS1847 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 between residues 26 and 27
862908006871	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908006872	Uncharacterized protein conserved in bacteria [Function unknown]; Region: ErfK; COG1376
862908006873	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
862908006874	Signal peptide predicted for BMS1849 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.962 between residues 24 and 25
862908006875	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; Region: FKBP_N; pfam01346
862908006876	FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]; Region: FkpA; COG0545
862908006877	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
862908006878	HMMPfam hit to PF00254, Peptidylprolyl isomerase, FKBP-type, score 8.3e-45
862908006879	PS00454 FKBP-type peptidyl-prolyl cis-trans isomerase signature 2.
862908006880	PS00453 FKBP-type peptidyl-prolyl cis-trans isomerase signature 1.
862908006881	Signal peptide predicted for BMS1850 by SignalP 2.0 HMM (Signal peptide probability 0.825) with cleavage site probability 0.355 between residues 18 and 19
862908006882	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
862908006883	active site
862908006884	motif I; other site
862908006885	motif II; other site
862908006886	HMMPfam hit to PF03767, Acid phosphatase (Class B), score 2e-52
862908006887	Signal peptide predicted for BMS1851 by SignalP 2.0 HMM (Signal peptide probability 0.952) with cleavage site probability 0.616 between residues 20 and 21
862908006888	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908006889	RNase HI family found mainly in prokaryotes; Region: RNase_HI_prokaryote_like; cd09278
862908006890	RNA/DNA hybrid binding site [nucleotide binding]; other site
862908006891	active site
862908006892	HMMPfam hit to PF00075, RNase H, score 8.4e-38
862908006893	M14 family of metallocarboxypeptidases and related proteins; Region: Peptidase_M14_like; cl11393
862908006894	active site
862908006895	Zn binding site [ion binding]; other site
862908006896	HMMPfam hit to PF00246, Peptidase M14, carboxypeptidase A, score 5.2e-15
862908006897	Signal peptide predicted for BMS1854 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.913 between residues 22 and 23
862908006898	Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which...; Region: ZnMc; cl00064
862908006899	Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which...; Region: ZnMc; cl00064
862908006900	active site
862908006901	Signal peptide predicted for BMS1855 by SignalP 2.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.721 between residues 21 and 22
862908006902	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908006903	DnaK suppressor protein [Signal transduction mechanisms]; Region: DksA; COG1734
862908006904	HMMPfam hit to PF01258, Zn-finger, prokaryotic DksA/TraR C4 type, score 5.2e-07
862908006905	Signal peptide predicted for BMS1857 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.379 between residues 37 and 38
862908006906	1 probable transmembrane helix predicted for BMS1857 by TMHMM2.0 at aa 12-34
862908006907	tRNA pseudouridine synthase B; Provisional; Region: truB; PRK00130
862908006908	Pseudouridine synthase, Escherichia coli TruB like; Region: PseudoU_synth_EcTruB; cd02573
862908006909	RNA binding site [nucleotide binding]; other site
862908006910	active site
862908006911	HMMPfam hit to PF01509, Pseudouridylate synthase TruB, N-terminal, score 2.9e-29
862908006912	Ribosome-binding factor A; Region: RBFA; pfam02033
862908006913	HMMPfam hit to PF02033, Ribosome-binding factor A, score 9.5e-07
862908006914	PS01319 Ribosome-binding factor A signature.
862908006915	Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760
862908006916	translation initiation factor IF-2; Region: IF-2; TIGR00487
862908006917	Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887
862908006918	G1 box; other site
862908006919	putative GEF interaction site [polypeptide binding]; other site
862908006920	GTP/Mg2+ binding site [chemical binding]; other site
862908006921	Switch I region; other site
862908006922	G2 box; other site
862908006923	G3 box; other site
862908006924	Switch II region; other site
862908006925	G4 box; other site
862908006926	G5 box; other site
862908006927	This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell; Region: IF2_mtIF2_II; cd03702
862908006928	Translation-initiation factor 2; Region: IF-2; pfam11987
862908006929	mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor...; Region: mtIF2_IVc; cd03692
862908006930	HMMPfam hit to PF03144, Elongation factor Tu, domain 2, score 9.7e-08
862908006931	PS01176 Initiation factor 2 signature.
862908006932	HMMPfam hit to PF03144, Elongation factor Tu, domain 2, score 6.3e-09
862908006933	HMMPfam hit to PF00009, Protein synthesis factor, GTP-binding, score 1.1e-47
862908006934	HMMPfam hit to PF01926, GTP-binding protein, HSR1-related, score 9.7e-09
862908006935	PS00017 ATP/GTP-binding site motif A (P-loop).
862908006936	HMMPfam hit to PF04760, Translation initiation factor IF-2, N-terminal, score 9.7e-06
862908006937	transcription elongation factor NusA; Provisional; Region: nusA; PRK12327
862908006938	NusA N-terminal domain; Region: NusA_N; pfam08529
862908006939	S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three...; Region: S1_NusA; cd04455
862908006940	RNA binding site [nucleotide binding]; other site
862908006941	homodimer interface [polypeptide binding]; other site
862908006942	NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of...; Region: NusA_KH; cd02134
862908006943	G-X-X-G motif; other site
862908006944	NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of...; Region: NusA_KH; cd02134
862908006945	G-X-X-G motif; other site
862908006946	HMMPfam hit to PF00575, RNA binding S1, score 4.9e-07
862908006947	ribosome maturation protein RimP; Reviewed; Region: PRK00092
862908006948	Bacillus subtilis YxlS-like, C-terminal domain; Region: YlxS_C; cd01734
862908006949	putative oligomer interface [polypeptide binding]; other site
862908006950	putative RNA binding site [nucleotide binding]; other site
862908006951	HMMPfam hit to PF02576, Protein of unknown function DUF150, score 2.4e-23
862908006952	ribosomal-protein-alanine acetyltransferase; Region: rimI; TIGR01575
862908006953	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
862908006954	Coenzyme A binding pocket [chemical binding]; other site
862908006955	HMMPfam hit to PF00583, GCN5-related N-acetyltransferase, score 3.4e-10
862908006956	Signal peptide predicted for BMS1864 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.960 between residues 18 and 19
862908006957	Tetratricopeptide repeat; Region: TPR_12; pfam13424
862908006958	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cl02429
862908006959	binding surface
862908006960	TPR motif; other site
862908006961	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
862908006962	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cl17355
862908006963	DNA binding site [nucleotide binding]
862908006964	HMMPfam hit to PF00515, TPR repeat, score 0.027
862908006965	HMMPfam hit to PF07719, , score 0.066; PF07719, Tetratricopeptide repeat
862908006966	HMMPfam hit to PF07719, , score 2; PF07719, Tetratricopeptide repeat
862908006967	HMMPfam hit to PF00515, TPR repeat, score 0.18
862908006968	HMMPfam hit to PF00515, TPR repeat, score 0.052; HMMPfam hit to PF07719, , score 0.094; PF07719, Tetratricopeptide repeat
862908006969	threonyl-tRNA synthetase; Reviewed; Region: thrS; PRK12305
862908006970	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; smart00863
862908006971	Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ThrRS_core; cd00771
862908006972	active site
862908006973	dimer interface [polypeptide binding]; other site
862908006974	motif 1; other site
862908006975	motif 2; other site
862908006976	motif 3; other site
862908006977	ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: ThrRS_anticodon; cd00860
862908006978	anticodon binding site; other site
862908006979	HMMPfam hit to PF00587, tRNA synthetases, class-II (G, H, P and S), score 1.1e-38
862908006980	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
862908006981	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
862908006982	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
862908006983	HMMPfam hit to PF03129, Anticodon-binding, score 1.3e-28
862908006984	D-alanyl-alanine synthetase A; Reviewed; Region: ddl; PRK01966
862908006985	D-ala D-ala ligase N-terminus; Region: Dala_Dala_lig_N; pfam01820
862908006986	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908006987	PS00697 ATP-dependent DNA ligase AMP-binding site.
862908006988	HMMPfam hit to PF07478, D-alanine--D-alanine ligase, C-terminal, score 1.4e-63
862908006989	L-lysine aminotransferase; Provisional; Region: PRK08297
862908006990	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
862908006991	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
862908006992	catalytic residue [active]
862908006993	HMMPfam hit to PF00202, Aminotransferase class-III, score 9.4e-13
862908006994	Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; Region: AAT; pfam03417
862908006995	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]; Region: BioA; COG0161
862908006996	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
862908006997	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
862908006998	catalytic residue [active]
862908006999	HMMPfam hit to PF00202, Aminotransferase class-III, score 9.7e-48
862908007000	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
862908007001	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]; Region: AtoD; COG1788
862908007002	HMMPfam hit to PF01144, Coenzyme A transferase, score 1.7e-77
862908007003	Coenzyme A transferase; Region: CoA_trans; cl17247
862908007004	HMMPfam hit to PF01144, Coenzyme A transferase, score 2.1e-40
862908007005	Signal peptide predicted for BMS1874 by SignalP 2.0 HMM (Signal peptide probability 0.799) with cleavage site probability 0.722 between residues 30 and 31
862908007006	NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; Region: nqrF; TIGR01941
862908007007	Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490
862908007008	putative catalytic site [active]
862908007009	putative metal binding site [ion binding]; other site
862908007010	putative phosphate binding site [ion binding]; other site
862908007011	DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; Region: DnaQ_like_exo; cl10012
862908007012	active site
862908007013	catalytic site [active]
862908007014	substrate binding site [chemical binding]; other site
862908007015	HMMPfam hit to PF00929, Exonuclease, score 0.00083
862908007016	Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739
862908007017	Peptidase family M23; Region: Peptidase_M23; pfam01551
862908007018	HMMPfam hit to PF01551, Peptidase M23B, score 1.6e-41
862908007019	Signal peptide predicted for BMS1878 by SignalP 2.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.539 between residues 23 and 24
862908007020	5'(3')-nucleotidase/polyphosphatase; Provisional; Region: surE; PRK00346
862908007021	HMMPfam hit to PF01975, Survival protein SurE, score 4.7e-66
862908007022	Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase; Region: GATase1_Anthranilate_Synthase; cd01743
862908007023	Glutamine amidotransferase class-I; Region: GATase; pfam00117
862908007024	glutamine binding [chemical binding]; other site
862908007025	catalytic triad [active]
862908007026	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 2.3e-12
862908007027	Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]; Region: Imp; COG1452
862908007028	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007029	Signal peptide predicted for BMS1882 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 20 and 21
862908007030	folylpolyglutamate synthase/dihydrofolate synthase; Region: folC; TIGR01499
862908007031	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
862908007032	acetyl-CoA carboxylase subunit beta; Validated; Region: PRK05654
862908007033	malonate decarboxylase subunit beta; Reviewed; Region: PRK07189; cl17682
862908007034	Signal peptide predicted for BMS1886 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 between residues 40 and 41
862908007035	1 probable transmembrane helix predicted for BMS1886 by TMHMM2.0 at aa 12-34
862908007036	cAMP phosphodiesterases class-II; Region: PDEase_II; cl17776
862908007037	HMMPfam hit to PF00753, Beta-lactamase-like, score 1.8e-07
862908007038	GAF domain; Region: GAF; cl17456
862908007039	c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]; Region: COG2206
862908007040	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
862908007041	Zn2+ binding site [ion binding]; other site
862908007042	Mg2+ binding site [ion binding]; other site
862908007043	HMMPfam hit to PF01966, Metal-dependent phosphohydrolase, HD subdomain, score 3.5e-32
862908007044	HMMPfam hit to PF01590, GAF, score 2e-08
862908007045	Predicted methyltransferases [General function prediction only]; Region: COG0313
862908007046	Ribosomal RNA small subunit methyltransferase I, also known as rRNA (cytidine-2'-O-)-methyltransferase RsmI; Region: RsmI; cd11648
862908007047	putative SAM binding site [chemical binding]; other site
862908007048	putative homodimer interface [polypeptide binding]; other site
862908007049	HMMPfam hit to PF00590, Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase, score 9.5e-22
862908007050	Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation; Region: STAS_anti-anti-sigma_factors; cd07043
862908007051	anti sigma factor interaction site; other site
862908007052	regulatory phosphorylation site [posttranslational modification]; other site
862908007053	HMMPfam hit to PF01740, Sulfate transporter/antisigma-factor antagonist STAS, score 6.5e-10
862908007054	2 probable transmembrane helices predicted for BMS1891 by TMHMM2.0 at aa 48-70 and 75-97
862908007055	Signal peptide predicted for BMS1891 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.938 between residues 40 and 41
862908007056	bacterial Ribonuclease HII-like; Region: RNase_HII_bacteria_HII_like; cd07182
862908007057	RNA/DNA hybrid binding site [nucleotide binding]; other site
862908007058	active site
862908007059	HMMPfam hit to PF01351, Ribonuclease HII/HIII, score 1e-41
862908007060	50S ribosomal protein L19; Provisional; Region: rplS; PRK05338
862908007061	HMMPfam hit to PF01245, Ribosomal protein L19, score 8.7e-47
862908007062	SAM-dependent RNA methyltransferase; Region: Methyltrn_RNA_4; pfam09936
862908007063	tRNA (Guanine-1)-methyltransferase; Region: tRNA_m1G_MT; cl00407
862908007064	HMMPfam hit to PF01746, tRNA (guanine-N1-)-methyltransferase, score 2.8e-65
862908007065	PS00211 ABC transporters family signature.
862908007066	16S rRNA-processing protein RimM; Provisional; Region: rimM; PRK00122
862908007067	RimM N-terminal domain; Region: RimM; pfam01782
862908007068	PRC-barrel domain; Region: PRC; pfam05239
862908007069	HMMPfam hit to PF05239, PRC-barrel, score 1.5e-10
862908007070	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
862908007071	This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cd06587
862908007072	active site
862908007073	metal binding site [ion binding]; metal-binding site
862908007074	HMMPfam hit to PF00903, Glyoxalase/bleomycin resistance protein/dioxygenase, score 2e-07
862908007075	phenylalanyl-tRNA synthetase subunit beta; Reviewed; Region: pheT; PRK00629
862908007076	tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain.  PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate...; Region: tRNA_bind_bactPheRS; cd02796
862908007077	putative tRNA-binding site [nucleotide binding]; other site
862908007078	B3/4 domain; Region: B3_4; pfam03483
862908007079	tRNA synthetase B5 domain; Region: B5; smart00874
862908007080	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
862908007081	motif 1; other site
862908007082	dimer interface [polypeptide binding]; other site
862908007083	active site
862908007084	motif 2; other site
862908007085	motif 3; other site
862908007086	Ferredoxin-fold anticodon binding domain; Region: FDX-ACB; cl08386
862908007087	HMMPfam hit to PF03147, Ferredoxin-fold anticodon-binding, score 9.7e-10
862908007088	HMMPfam hit to PF03484, tRNA synthetase, B5, score 1.9e-20
862908007089	HMMPfam hit to PF03483, B3/4, score 5e-76
862908007090	HMMPfam hit to PF01588, t-RNA-binding region, score 1.5e-29
862908007091	phenylalanyl-tRNA synthetase subunit alpha; Validated; Region: pheS; PRK00488
862908007092	Aminoacyl tRNA synthetase class II, N-terminal domain; Region: Phe_tRNA-synt_N; pfam02912
862908007093	Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible...; Region: PheRS_alpha_core; cd00496
862908007094	dimer interface [polypeptide binding]; other site
862908007095	motif 1; other site
862908007096	active site
862908007097	motif 2; other site
862908007098	motif 3; other site
862908007099	HMMPfam hit to PF01409, Phenylalanyl-tRNA synthetase, class IIc, score 1.4e-121
862908007100	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
862908007101	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature.
862908007102	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
862908007103	HMMPfam hit to PF02912, Aminoacyl tRNA synthetase, class II, N-terminal, score 5.1e-16
862908007104	Domain of unknown function (DUF4416); Region: DUF4416; pfam14385
862908007105	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
862908007106	RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer...; Region: RfaE_like; cd01172
862908007107	putative ribose interaction site [chemical binding]; other site
862908007108	putative ADP binding site [chemical binding]; other site
862908007109	HMMPfam hit to PF00294, Carbohydrate kinase, PfkB, score 1.9e-19
862908007110	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
862908007111	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
862908007112	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
862908007113	cytidylate kinase; Provisional; Region: cmk; PRK00023
862908007114	Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor; Region: CMPK; cd02020
862908007115	CMP-binding site; other site
862908007116	The sites determining sugar specificity; other site
862908007117	HMMPfam hit to PF02224, Cytidylate kinase, score 3.4e-50
862908007118	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007119	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
862908007120	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
862908007121	N-acetyl-D-glucosamine binding site [chemical binding]; other site
862908007122	catalytic residue [active]
862908007123	HMMPfam hit to PF01464, SLT, score 5.6e-22
862908007124	1 probable transmembrane helix predicted for BMS1908 by TMHMM2.0 at aa 20-37
862908007125	Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]; Region: COG1331
862908007126	TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein; Region: SSP411; cd02955
862908007127	catalytic residues [active]
862908007128	HMMPfam hit to PF03190, Protein of unknown function DUF255, score 6.2e-39
862908007129	PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature.
862908007130	Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]; Region: CaiB; COG1804
862908007131	CoA-transferase family III; Region: CoA_transf_3; pfam02515
862908007132	1 probable transmembrane helix predicted for BMS1911 by TMHMM2.0 at aa 22-44
862908007133	FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]; Region: SlpA; COG1047
862908007134	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
862908007135	HMMPfam hit to PF00254, Peptidylprolyl isomerase, FKBP-type, score 0.0008
862908007136	Alkaline phosphatase [Inorganic ion transport and metabolism]; Region: PhoA; COG1785
862908007137	Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH; Region: alkPPc; cl15837
862908007138	active site
862908007139	dimer interface [polypeptide binding]; other site
862908007140	Signal peptide predicted for BMS1913 by SignalP 2.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.545 between residues 21 and 22
862908007141	HMMPfam hit to PF00245, Alkaline phosphatase, score 3.5e-40
862908007142	PS00123 Alkaline phosphatase active site.
862908007143	Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739
862908007144	Peptidase family M23; Region: Peptidase_M23; pfam01551
862908007145	HMMPfam hit to PF01551, Peptidase M23B, score 1e-36
862908007146	Signal peptide predicted for BMS1914 by SignalP 2.0 HMM (Signal peptide probability 0.907) with cleavage site probability 0.863 between residues 21 and 22
862908007147	tRNA methyl transferase; Region: tRNA_Me_trans; pfam03054
862908007148	tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs; Region: tRNA_Me_trans; cd01998
862908007149	Ligand Binding Site [chemical binding]; other site
862908007150	HMMPfam hit to PF03054, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, score 4.2e-187
862908007151	M28 Zn-peptidases include aminopeptidases and carboxypeptidases; Region: M28; cd02690
862908007152	Peptidase family M28; Region: Peptidase_M28; pfam04389
862908007153	metal binding site [ion binding]; metal-binding site
862908007154	HMMPfam hit to PF04389, Peptidase M28, score 1.9e-13
862908007155	tRNA methyl transferase; Region: tRNA_Me_trans; pfam03054
862908007156	tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs; Region: tRNA_Me_trans; cd01998
862908007157	Ligand Binding Site [chemical binding]; other site
862908007158	Site-specific DNA methylase [DNA replication, recombination, and repair]; Region: Dcm; COG0270
862908007159	Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group...; Region: Cyt_C5_DNA_methylase; cd00315
862908007160	cofactor binding site; other site
862908007161	DNA binding site [nucleotide binding]
862908007162	substrate interaction site [chemical binding]; other site
862908007163	Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group...; Region: Cyt_C5_DNA_methylase; cd00315
862908007164	HMMPfam hit to PF00145, C-5 cytosine-specific DNA methylase, score 2.3e-76
862908007165	PS00095 C-5 cytosine-specific DNA methylases C-terminal signature.
862908007166	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
862908007167	nucleotide binding site [chemical binding]; other site
862908007168	Signal peptide predicted for BMS1920 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.446 between residues 25 and 26
862908007169	HMMPfam hit to PF02541, Ppx/GppA phosphatase, score 3e-06
862908007170	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]; Region: MhpC; COG0596
862908007171	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
862908007172	Signal peptide predicted for BMS1921 by SignalP 2.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.864 between residues 19 and 20
862908007173	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908007174	HMMPfam hit to PF00561, Alpha/beta hydrolase fold, score 2.2e-21
862908007175	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
862908007176	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
862908007177	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908007178	Walker A/P-loop; other site
862908007179	ATP binding site [chemical binding]; other site
862908007180	Q-loop/lid; other site
862908007181	ABC transporter signature motif; other site
862908007182	Walker B; other site
862908007183	D-loop; other site
862908007184	H-loop/switch region; other site
862908007185	HMMPfam hit to PF00005, ABC transporter, score 4.1e-44
862908007186	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007187	HMMPfam hit to PF00664, ABC transporter, transmembrane region, score 3.6e-28
862908007188	5 probable transmembrane helices predicted for BMS1922 by TMHMM2.0 at aa 42-64, 79-98, 160-177, 181-198 and 268-290
862908007189	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
862908007190	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
862908007191	ATP-binding cassette domain of multidrug resistance protein-like transporters; Region: ABCC_MRP_Like; cd03228
862908007192	Walker A/P-loop; other site
862908007193	ATP binding site [chemical binding]; other site
862908007194	Q-loop/lid; other site
862908007195	ABC transporter signature motif; other site
862908007196	Walker B; other site
862908007197	D-loop; other site
862908007198	H-loop/switch region; other site
862908007199	HMMPfam hit to PF00005, ABC transporter, score 3.8e-43
862908007200	PS00211 ABC transporters family signature.
862908007201	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007202	HMMPfam hit to PF00664, ABC transporter, transmembrane region, score 0.00015
862908007203	4 probable transmembrane helices predicted for BMS1923 by TMHMM2.0 at aa 21-43, 68-90, 143-165 and 258-280
862908007204	lipoate-protein ligase A; Provisional; Region: lplA; PRK03822
862908007205	Lipoate-protein ligase A [Coenzyme metabolism]; Region: LplA; COG0095
862908007206	Bacterial lipoate protein ligase C-terminus; Region: Lip_prot_lig_C; pfam10437
862908007207	HMMPfam hit to PF03099, Biotin/lipoate A/B protein ligase, score 1.8e-30
862908007208	Pectinacetylesterase; Region: PAE; pfam03283
862908007209	Signal peptide predicted for BMS1925 by SignalP 2.0 HMM (Signal peptide probability 0.924) with cleavage site probability 0.920 between residues 17 and 18
862908007210	Signal peptide predicted for BMS1926 by SignalP 2.0 HMM (Signal peptide probability 0.919) with cleavage site probability 0.554 between residues 24 and 25
862908007211	Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]; Region: CorC; COG4535
862908007212	Signal peptide predicted for BMS1927 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 between residues 32 and 33
862908007213	1 probable transmembrane helix predicted for BMS1927 by TMHMM2.0 at aa 15-33
862908007214	Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]; Region: MrcB; COG0744
862908007215	Transglycosylase; Region: Transgly; pfam00912
862908007216	HMMPfam hit to PF00912, Glycosyl transferase, family 51, score 9e-51
862908007217	1 probable transmembrane helix predicted for BMS1930 by TMHMM2.0 at aa 9-31
862908007218	Signal peptide predicted for BMS1930 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.451 between residues 21 and 22
862908007219	Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]; Region: BetA; COG2303
862908007220	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
862908007221	GTPase-activating protein (GAP) domain found in bacterial cytotoxins, ExoS, SptP, and YopE. Part of protein secretion system; stimulates Rac1- dependent cytoskeletal changes that promote bacterial internalization; Region: ToxGAP; cl11615
862908007222	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
862908007223	PS00221 MIP family signature.
862908007224	Signal peptide predicted for BMS1932 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.917 between residues 21 and 22
862908007225	Signal peptide predicted for BMS1934 by SignalP 2.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.774 between residues 19 and 20
862908007226	Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]; Region: HisB; COG0241
862908007227	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
862908007228	active site
862908007229	motif I; other site
862908007230	motif II; other site
862908007231	aspartate carbamoyltransferase catalytic subunit; Provisional; Region: pyrB; PRK00856
862908007232	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729
862908007233	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185
862908007234	HMMPfam hit to PF02729, Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain, score 2.7e-31
862908007235	PS00097 Aspartate and ornithine carbamoyltransferases signature.
862908007236	HMMPfam hit to PF00185, Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region, score 4e-13
862908007237	Carbamoyl-phosphate synthase small chain, CPSase domain; Region: CPSase_sm_chain; cl03056
862908007238	carbamoyl phosphate synthase small subunit; Reviewed; Region: PRK12564
862908007239	Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II; Region: GATase1_CPSase; cd01744
862908007240	catalytic site [active]
862908007241	subunit interface [polypeptide binding]; other site
862908007242	carbamoyl phosphate synthase large subunit; Reviewed; Region: carB; PRK05294
862908007243	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
862908007244	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908007245	Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Region: CPSase_L_D3; pfam02787
862908007246	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
862908007247	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908007248	Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways...; Region: MGS_CPS_II; cd01424
862908007249	IMP binding site; other site
862908007250	dimer interface [polypeptide binding]; other site
862908007251	interdomain contacts; other site
862908007252	partial ornithine binding site; other site
862908007253	HMMPfam hit to PF00988, Carbamoyl-phosphate synthase, small chain, score 2.7e-13
862908007254	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 2.1e-38
862908007255	HMMPfam hit to PF00289, Carbamoyl-phosphate synthetase large chain, N-terminal, score 2.5e-43
862908007256	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain, ATP-binding, score 2.4e-79
862908007257	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
862908007258	HMMPfam hit to PF02787, Carbamoyl-phosphate synthetase large chain, oligomerisation, score 1.2e-37
862908007259	HMMPfam hit to PF00289, Carbamoyl-phosphate synthetase large chain, N-terminal, score 7.9e-13
862908007260	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain, ATP-binding, score 8.7e-12
862908007261	HMMPfam hit to PF02142, Methylglyoxal synthase-like, score 1.9e-19
862908007262	Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase...; Region: OMP_decarboxylase_like; cd04725
862908007263	active site
862908007264	dimer interface [polypeptide binding]; other site
862908007265	HMMPfam hit to PF00215, Orotidine 5'-phosphate decarboxylase, score 5.4e-39
862908007266	PS00156 Orotidine 5'-phosphate decarboxylase active site.
862908007267	Signal peptide predicted for BMS1941 by SignalP 2.0 HMM (Signal peptide probability 0.973) with cleavage site probability 0.972 between residues 18 and 19
862908007268	ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase; Region: ribokinase_pfkB_like; cl00192
862908007269	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
862908007270	substrate binding site [chemical binding]; other site
862908007271	ATP binding site [chemical binding]; other site
862908007272	HMMPfam hit to PF00294, Carbohydrate kinase, PfkB, score 5.2e-08
862908007273	PS00584 pfkB family of carbohydrate kinases signature 2.
862908007274	Signal peptide predicted for BMS1943 by SignalP 2.0 HMM (Signal peptide probability 0.967) with cleavage site probability 0.956 between residues 32 and 33
862908007275	1 probable transmembrane helix predicted for BMS1943 by TMHMM2.0 at aa 9-31
862908007276	1 probable transmembrane helix predicted for BMS1944 by TMHMM2.0 at aa 5-27
862908007277	Signal peptide predicted for BMS1944 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.504 between residues 21 and 22
862908007278	Signal peptide predicted for BMS1945 by SignalP 2.0 HMM (Signal peptide probability 0.973) with cleavage site probability 0.480 between residues 16 and 17
862908007279	1 probable transmembrane helix predicted for BMS1946 by TMHMM2.0 at aa 115-137
862908007280	Signal peptide predicted for BMS1947 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.995 between residues 19 and 20
862908007281	Signal peptide predicted for BMS1949 by SignalP 2.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.890 between residues 22 and 23
862908007282	This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins.  sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa; Region: ACD_sHsps_p23-like; cd00298
862908007283	Uncharacterized membrane protein [Function unknown]; Region: SapB; COG1285
862908007284	MgtC family; Region: MgtC; pfam02308
862908007285	HMMPfam hit to PF02308, MgtC/SapB transporter, score 2e-39
862908007286	5 probable transmembrane helices predicted for BMS1951 by TMHMM2.0 at aa 15-37, 50-69, 79-96, 103-125 and 129-151
862908007287	Uncharacterized conserved protein (DUF2183); Region: DUF2183; pfam09949
862908007288	2 probable transmembrane helices predicted for BMS1953 by TMHMM2.0 at aa 15-34 and 55-72
862908007289	The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid.  N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a...; Region: Ntn_hydrolase; cl00467
862908007290	active site
862908007291	Signal peptide predicted for BMS1956 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 20 and 21
862908007292	Propeptide_C25; Region: Propeptide_C25; pfam08126
862908007293	Peptidase family C25; Region: Peptidase_C25; pfam01364
862908007294	active site
862908007295	1 probable transmembrane helix predicted for BMS1958 by TMHMM2.0 at aa 7-29
862908007296	phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein; Region: 3A0109s03R; TIGR01098
862908007297	TRAP transporter solute receptor, TAXI family; Region: TRAP_TAXI; TIGR02122
862908007298	Signal peptide predicted for BMS1959 by SignalP 2.0 HMM (Signal peptide probability 0.979) with cleavage site probability 0.704 between residues 34 and 35
862908007299	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908007300	phosphonate ABC transporter, ATP-binding protein; Region: ABC_phnC; TIGR02315
862908007301	ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Region: ABC_PhnC_transporter; cd03256
862908007302	Walker A/P-loop; other site
862908007303	ATP binding site [chemical binding]; other site
862908007304	Q-loop/lid; other site
862908007305	ABC transporter signature motif; other site
862908007306	Walker B; other site
862908007307	D-loop; other site
862908007308	H-loop/switch region; other site
862908007309	HMMPfam hit to PF00005, ABC transporter, score 5.8e-58
862908007310	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007311	PS00211 ABC transporters family signature.
862908007312	phosphonate ABC transporter, permease protein PhnE; Region: PhnE; TIGR01097
862908007313	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
862908007314	8 probable transmembrane helices predicted for BMS1961 by TMHMM2.0 at aa 32-54, 64-86, 107-129, 167-189, 218-240, 275-293, 300-322 and 332-351
862908007315	HMMPfam hit to PF00528, Binding-protein-dependent transport systems inner membrane component, score 1.7e-10
862908007316	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
862908007317	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
862908007318	substrate binding pocket [chemical binding]; other site
862908007319	membrane-bound complex binding site; other site
862908007320	hinge residues; other site
862908007321	Signal peptide predicted for BMS1962 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 19 and 20
862908007322	Signal peptide predicted for BMS1963 by SignalP 2.0 HMM (Signal peptide probability 0.661) with cleavage site probability 0.597 between residues 23 and 24
862908007323	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
862908007324	HMMPfam hit to PF00873, Acriflavin resistance protein, score 6.2e-40
862908007325	11 probable transmembrane helices predicted for BMS1964 by TMHMM2.0 at aa 15-37, 339-361, 394-416, 437-456, 466-488, 521-543, 866-885, 892-911, 921-943, 964-986 and 996-1018
862908007326	Uncharacterized FAD-dependent dehydrogenases [General function prediction only]; Region: COG2509
862908007327	Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]; Region: GlpB; cl17730
862908007328	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
862908007329	competence/damage-inducible protein CinA N-terminal domain; Region: cinA_nterm; TIGR00200
862908007330	Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of...; Region: cinA; cd00885
862908007331	putative MPT binding site; other site
862908007332	Competence-damaged protein; Region: CinA; pfam02464
862908007333	HMMPfam hit to PF00994, Molybdenum cofactor biosynthesis protein, score 6.9e-07
862908007334	PS00213 Lipocalin signature.
862908007335	HMMPfam hit to PF02464, CinA, C-terminal, score 3.4e-53
862908007336	Signal peptide predicted for BMS1967 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.978 between residues 18 and 19
862908007337	FG-GAP repeat; Region: FG-GAP_2; pfam14312
862908007338	FG-GAP repeat; Region: FG-GAP_2; pfam14312
862908007339	FG-GAP repeat; Region: FG-GAP_2; pfam14312
862908007340	FG-GAP repeat; Region: FG-GAP_2; pfam14312
862908007341	FG-GAP repeat; Region: FG-GAP_2; pfam14312
862908007342	FG-GAP repeat; Region: FG-GAP_2; pfam14312
862908007343	FG-GAP repeat; Region: FG-GAP_2; pfam14312
862908007344	FG-GAP repeat; Region: FG-GAP_2; pfam14312
862908007345	FG-GAP repeat; Region: FG-GAP_2; pfam14312
862908007346	FG-GAP repeat; Region: FG-GAP_2; pfam14312
862908007347	FG-GAP repeat; Region: FG-GAP_2; pfam14312
862908007348	FG-GAP repeat; Region: FG-GAP_2; pfam14312
862908007349	FG-GAP repeat; Region: FG-GAP_2; pfam14312
862908007350	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007351	Protein of unknown function, DUF547; Region: DUF547; pfam04784
862908007352	Signal peptide predicted for BMS1970 by SignalP 2.0 HMM (Signal peptide probability 0.975) with cleavage site probability 0.519 between residues 28 and 29
862908007353	Bacitracin resistance protein BacA; Region: BacA; pfam02673
862908007354	6 probable transmembrane helices predicted for BMS1971 by TMHMM2.0 at aa 87-104, 117-134, 149-168, 188-205, 220-242 and 249-267
862908007355	HMMPfam hit to PF02673, Bacitracin resistance protein BacA, score 2.1e-76
862908007356	2 probable transmembrane helices predicted for BMS1972 by TMHMM2.0 at aa 10-32 and 149-171
862908007357	Signal peptide predicted for BMS1974 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.610 between residues 36 and 37
862908007358	Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins); Region: GluZincin; cl14813
862908007359	Zn binding site [ion binding]; other site
862908007360	Signal peptide predicted for BMS1975 by SignalP 2.0 HMM (Signal peptide probability 0.894) with cleavage site probability 0.825 between residues 39 and 40
862908007361	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908007362	PS00190 Cytochrome c family heme-binding site signature.
862908007363	1 probable transmembrane helix predicted for BMS1976 by TMHMM2.0 at aa 6-25
862908007364	1 probable transmembrane helix predicted for BMS1977 by TMHMM2.0 at aa 7-29
862908007365	Signal peptide predicted for BMS1977 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 21 and 22
862908007366	Signal peptide predicted for BMS1978 by SignalP 2.0 HMM (Signal peptide probability 0.615) with cleavage site probability 0.210 between residues 17 and 18
862908007367	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
862908007368	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cl17432
862908007369	substrate binding pocket [chemical binding]; other site
862908007370	membrane-bound complex binding site; other site
862908007371	hinge residues; other site
862908007372	Signal peptide predicted for BMS1979 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.778 between residues 19 and 20
862908007373	Peptidase domain in the S8 and S53 families; Region: Peptidases_S8_S53; cd00306
862908007374	active site
862908007375	catalytic residues [active]
862908007376	Signal peptide predicted for BMS1980 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.979 between residues 19 and 20
862908007377	3-oxoacid CoA-transferase, B subunit; Region: pcaJ_scoB_fam; TIGR02428
862908007378	HMMPfam hit to PF01144, Coenzyme A transferase, score 5.2e-59
862908007379	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide.
862908007380	PS01274 CoA transferases signature 2.
862908007381	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]; Region: AtoD; COG1788
862908007382	HMMPfam hit to PF01144, Coenzyme A transferase, score 2.2e-90
862908007383	this CDS contains a stop codon after residue 297
862908007384	HMMPfam hit to PF05683, Fe-S type hydro-lyases tartrate/fumarate beta region, score 3.7e-65
862908007385	HMMPfam hit to PF05681, Fe-S type hydro-lyases tartrate/fumarate alpha region, score 1.8e-87
862908007386	Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]; Region: UvrD; COG0210
862908007387	Part of AAA domain; Region: AAA_19; pfam13245
862908007388	Family description; Region: UvrD_C_2; pfam13538
862908007389	HMMPfam hit to PF00580, UvrD/REP helicase, score 1.8e-182
862908007390	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007391	nitrogen fixation negative regulator NifL; Region: nifL_nitrog; TIGR02938
862908007392	Signal peptide predicted for BMS1988 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.603 between residues 18 and 19
862908007393	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908007394	enoyl-CoA hydratase; Provisional; Region: PRK09245
862908007395	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
862908007396	substrate binding site [chemical binding]; other site
862908007397	oxyanion hole (OAH) forming residues; other site
862908007398	trimer interface [polypeptide binding]; other site
862908007399	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase, score 1.7e-44
862908007400	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908007401	Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]; Region: LeuA; COG0119
862908007402	3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain; Region: DRE_TIM_HMGL; cd07938
862908007403	active site
862908007404	catalytic residues [active]
862908007405	metal binding site [ion binding]; metal-binding site
862908007406	HMMPfam hit to PF00682, HMG-CoA lyase-like, score 1e-69
862908007407	this CDS contains a framshift after residue 497
862908007408	HMMPfam hit to PF00364, Biotin/lipoyl attachment, score 1.8e-20
862908007409	PS00188 Biotin-requiring enzymes attachment site.
862908007410	HMMPfam hit to PF02785, Biotin carboxylase, C-terminal, score 1.1e-41
862908007411	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain, ATP-binding, score 3.1e-95
862908007412	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
862908007413	PS00866 Carbamoyl-phosphate synthase subdomain signature 1.
862908007414	HMMPfam hit to PF00289, Carbamoyl-phosphate synthetase large chain, N-terminal, score 5.7e-41
862908007415	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
862908007416	enoyl-CoA hydratase; Provisional; Region: PRK05995
862908007417	substrate binding site [chemical binding]; other site
862908007418	oxyanion hole (OAH) forming residues; other site
862908007419	trimer interface [polypeptide binding]; other site
862908007420	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase, score 3.3e-42
862908007421	3-methylcrotonyl-CoA carboxylase, beta chain; Region: PLN02820
862908007422	Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]; Region: AccA; cl17345
862908007423	HMMPfam hit to PF01039, Carboxyl transferase, score 2.3e-212
862908007424	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007425	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908007426	Signal peptide predicted for BMS1996 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.876 between residues 18 and 19
862908007427	Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+...; Region: Nudix_Hydrolase; cl00447
862908007428	nudix motif; other site
862908007429	Metallo-beta-lactamase superfamily; Region: Lactamase_B; smart00849
862908007430	HMMPfam hit to PF00753, Beta-lactamase-like, score 6.9e-18
862908007431	HMMPfam hit to PF00293, NUDIX hydrolase, score 1e-06
862908007432	Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]; Region: COG4231
862908007433	Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like; cd07034
862908007434	dimer interface [polypeptide binding]; other site
862908007435	PYR/PP interface [polypeptide binding]; other site
862908007436	TPP binding site [chemical binding]; other site
862908007437	substrate binding site [chemical binding]; other site
862908007438	Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and...; Region: TPP_enzymes; cl01629
862908007439	TPP-binding site [chemical binding]; other site
862908007440	Pyruvate ferredoxin/flavodoxin oxidoreductase; Region: POR; cl00546
862908007441	HMMPfam hit to PF02775, Pyruvate decarboxylase, score 6.9e-20
862908007442	4-hydroxyphenylpyruvate dioxygenase; Region: 4HPPD; TIGR01263
862908007443	N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS); Region: HPPD_N_like; cd08342
862908007444	dimer interface [polypeptide binding]; other site
862908007445	C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS); Region: HPPD_C_like; cd07250
862908007446	active site
862908007447	Fe binding site [ion binding]; other site
862908007448	HMMPfam hit to PF00903, Glyoxalase/bleomycin resistance protein/dioxygenase, score 3.9e-06
862908007449	enoyl-CoA hydratase; Provisional; Region: PRK05862
862908007450	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
862908007451	substrate binding site [chemical binding]; other site
862908007452	oxyanion hole (OAH) forming residues; other site
862908007453	trimer interface [polypeptide binding]; other site
862908007454	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase, score 4.1e-65
862908007455	PS00166 Enoyl-CoA hydratase/isomerase signature.
862908007456	enoyl-CoA hydratase; Provisional; Region: PRK08140
862908007457	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
862908007458	substrate binding site [chemical binding]; other site
862908007459	oxyanion hole (OAH) forming residues; other site
862908007460	trimer interface [polypeptide binding]; other site
862908007461	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase, score 2.1e-35
862908007462	1 probable transmembrane helix predicted for BMS2001 by TMHMM2.0 at aa 106-128
862908007463	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908007464	Phenylacetic acid catabolic protein; Region: PaaA_PaaC; cl01346
862908007465	HMMPfam hit to PF05138, Phenylacetic acid catabolic, score 6.1e-12
862908007466	this CDS has a frameshift after residue 287
862908007467	HMMPfam hit to PF02737, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding, score 7.6e-51
862908007468	HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, score 1.8e-39
862908007469	HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, score 2.5e-09
862908007470	beta-ketoadipyl CoA thiolase; Validated; Region: PRK09050
862908007471	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
862908007472	dimer interface [polypeptide binding]; other site
862908007473	active site
862908007474	HMMPfam hit to PF00108, Thiolase, score 1.4e-100
862908007475	HMMPfam hit to PF02803, Thiolase, score 2.6e-59
862908007476	PS00737 Thiolases signature 2.
862908007477	PS00099 Thiolases active site.
862908007478	NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]; Region: Ndh; COG1252
862908007479	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
862908007480	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
862908007481	Signal peptide predicted for BMS2006 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.975 between residues 19 and 20
862908007482	HMMPfam hit to PF00070, FAD-dependent pyridine nucleotide-disulphide oxidoreductase, score 1.8e-41
862908007483	1 probable transmembrane helix predicted for BMS2006 by TMHMM2.0 at aa 364-386
862908007484	Signal peptide predicted for BMS2007 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.956 between residues 23 and 24
862908007485	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908007486	Signal peptide predicted for BMS2008 by SignalP 2.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.522 between residues 25 and 26
862908007487	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908007488	PQQ-dependent dehydrogenases and related proteins; Region: PQQ_DH_like; cl11493
862908007489	PQQ-like domain; Region: PQQ_2; pfam13360
862908007490	Trp docking motif [polypeptide binding]; other site
862908007491	active site
862908007492	Signal peptide predicted for BMS2009 by SignalP 2.0 HMM (Signal peptide probability 0.902) with cleavage site probability 0.418 between residues 20 and 21
862908007493	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908007494	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2976
862908007495	Uncharacterized protein conserved in bacteria (DUF2133); Region: DUF2133; pfam09976
862908007496	HMMPfam hit to PF07719, , score 0.16; PF07719, Tetratricopeptide repeat
862908007497	1 probable transmembrane helix predicted for BMS2010 by TMHMM2.0 at aa 29-51
862908007498	Signal peptide predicted for BMS2011 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.852 between residues 25 and 26
862908007499	Signal peptide predicted for BMS2012 by SignalP 2.0 HMM (Signal peptide probability 0.762) with cleavage site probability 0.388 between residues 23 and 24
862908007500	Uncharacterized conserved protein (DUF2183); Region: DUF2183; pfam09949
862908007501	Signal peptide predicted for BMS2013 by SignalP 2.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.968 between residues 17 and 18
862908007502	EngA1 GTPase contains the first domain of EngA; Region: EngA1; cd01894
862908007503	G1 box; other site
862908007504	GTP/Mg2+ binding site [chemical binding]; other site
862908007505	Switch I region; other site
862908007506	G2 box; other site
862908007507	Switch II region; other site
862908007508	G3 box; other site
862908007509	G4 box; other site
862908007510	G5 box; other site
862908007511	Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Region: Ras_like_GTPase; cl17170
862908007512	G1 box; other site
862908007513	GTP/Mg2+ binding site [chemical binding]; other site
862908007514	G2 box; other site
862908007515	Switch I region; other site
862908007516	Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Region: Ras_like_GTPase; cl17170
862908007517	G3 box; other site
862908007518	Switch II region; other site
862908007519	GTP/Mg2+ binding site [chemical binding]; other site
862908007520	G4 box; other site
862908007521	G5 box; other site
862908007522	HMMPfam hit to PF01926, GTP-binding protein, HSR1-related, score 2e-34
862908007523	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007524	HMMPfam hit to PF01926, GTP-binding protein, HSR1-related, score 1.4e-38
862908007525	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007526	GTPase Era; Reviewed; Region: era; PRK00089
862908007527	E. coli Ras-like protein (Era) is a multifunctional GTPase; Region: Era; cd04163
862908007528	G1 box; other site
862908007529	GTP/Mg2+ binding site [chemical binding]; other site
862908007530	Switch I region; other site
862908007531	G2 box; other site
862908007532	Switch II region; other site
862908007533	G3 box; other site
862908007534	G4 box; other site
862908007535	G5 box; other site
862908007536	KH domain; Region: KH_2; pfam07650
862908007537	HMMPfam hit to PF07650, KH, type 2, score 1.9e-16
862908007538	HMMPfam hit to PF01926, GTP-binding protein, HSR1-related, score 7.7e-29
862908007539	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007540	dsRNA-specific ribonuclease [Transcription]; Region: Rnc; COG0571
862908007541	RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in...; Region: RIBOc; cd00593
862908007542	dimerization interface [polypeptide binding]; other site
862908007543	active site
862908007544	metal binding site [ion binding]; metal-binding site
862908007545	HMMPfam hit to PF00035, Double-stranded RNA binding, score 0.019
862908007546	HMMPfam hit to PF00636, Ribonuclease III, score 1.4e-38
862908007547	PS00517 Ribonuclease III family signature.
862908007548	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
862908007549	Signal peptide predicted for BMS2017 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.987 between residues 46 and 47
862908007550	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
862908007551	active site
862908007552	Int/Topo IB signature motif; other site
862908007553	DNA binding site [nucleotide binding]
862908007554	HMMPfam hit to PF02899, Phage integrase, N-terminal SAM-like, score 1.7e-06
862908007555	HMMPfam hit to PF00589, Phage integrase, score 0.017
862908007556	Signal peptide predicted for BMS2019 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.600 between residues 23 and 24
862908007557	Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea; Region: Transaldolase_FSA; cd00956
862908007558	active site
862908007559	intersubunit interactions; other site
862908007560	catalytic residue [active]
862908007561	HMMPfam hit to PF00923, Transaldolase, score 5.6e-65
862908007562	PS01054 Transaldolase signature 1.
862908007563	Signal peptide predicted for BMS2021 by SignalP 2.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.346 between residues 22 and 23
862908007564	HMMPfam hit to PF00413, Peptidase M10A and M12B, matrixin and adamalysin, score 0.00033
862908007565	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908007566	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]; Region: RpoE; COG1595
862908007567	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
862908007568	DNA binding residues [nucleotide binding]
862908007569	HMMPfam hit to PF04542, Sigma-70 region 2, score 0.0017
862908007570	Protein of unknown function, DUF547; Region: DUF547; pfam04784
862908007571	Signal peptide predicted for BMS2024 by SignalP 2.0 HMM (Signal peptide probability 0.888) with cleavage site probability 0.627 between residues 17 and 18
862908007572	HMMPfam hit to PF04784, Protein of unknown function DUF547, score 1.2e-15
862908007573	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908007574	FeS/SAM binding site; other site
862908007575	HMMPfam hit to PF04055, Radical SAM, score 8.1e-14
862908007576	V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]; Region: COG3591
862908007577	Signal peptide predicted for BMS2026 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.994 between residues 21 and 22
862908007578	PS00134 Serine proteases, trypsin family, histidine active site.
862908007579	Signal peptide predicted for BMS2028 by SignalP 2.0 HMM (Signal peptide probability 0.866) with cleavage site probability 0.857 between residues 27 and 28
862908007580	Ribosomal protein L20; Region: Ribosomal_L20; cd07026
862908007581	23S rRNA binding site [nucleotide binding]; other site
862908007582	L21 binding site [polypeptide binding]; other site
862908007583	L13 binding site [polypeptide binding]; other site
862908007584	HMMPfam hit to PF00453, Ribosomal protein L20, score 1.5e-32
862908007585	PS00937 Ribosomal protein L20 signature.
862908007586	50S ribosomal protein L35; Reviewed; Region: rpmI; PRK00172
862908007587	HMMPfam hit to PF01632, Ribosomal protein L35, score 2.4e-23
862908007588	PS00936 Ribosomal protein L35 signature.
862908007589	translation initiation factor IF-3; Reviewed; Region: infC; PRK00028
862908007590	Translation initiation factor IF-3, N-terminal domain; Region: IF3_N; pfam05198
862908007591	Translation initiation factor IF-3, C-terminal domain; Region: IF3_C; pfam00707
862908007592	Glycerol-3-phosphate O-acyltransferase [Lipid metabolism]; Region: PlsB; COG2937
862908007593	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like; Region: LPLAT_DHAPAT-like; cd07993
862908007594	putative acyl-acceptor binding pocket; other site
862908007595	HMMPfam hit to PF01553, Phospholipid/glycerol acyltransferase, score 4.5e-16
862908007596	inosine 5-monophosphate dehydrogenase; Validated; Region: PRK06843
862908007597	IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of...; Region: IMPDH; cd00381
862908007598	active site
862908007599	HMMPfam hit to PF00478, IMP dehydrogenase/GMP reductase, score 1.3e-140
862908007600	PS00487 IMP dehydrogenase / GMP reductase signature.
862908007601	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
862908007602	putative DNA binding site [nucleotide binding]; other site
862908007603	putative Zn2+ binding site [ion binding]; other site
862908007604	Na+/phosphate symporter [Inorganic ion transport and metabolism]; Region: NptA; COG1283
862908007605	Na+/Pi-cotransporter; Region: Na_Pi_cotrans; pfam02690
862908007606	PhoU domain; Region: PhoU; pfam01895
862908007607	8 probable transmembrane helices predicted for BMS2037 by TMHMM2.0 at aa 7-29, 53-75, 82-104, 108-130, 137-156, 176-198, 241-263 and 278-299
862908007608	HMMPfam hit to PF02690, Na+/Pi-cotransporter, score 6.1e-05
862908007609	Signal peptide predicted for BMS2037 by SignalP 2.0 HMM (Signal peptide probability 0.750) with cleavage site probability 0.463 between residues 33 and 34
862908007610	1 probable transmembrane helix predicted for BMS2038 by TMHMM2.0 at aa 87-109
862908007611	NAD(P) binding domain of amino acid dehydrogenase-like proteins; Region: NAD_bind_amino_acid_DH; cl17226
862908007612	NAD(P) binding pocket [chemical binding]; other site
862908007613	porphobilinogen deaminase; Reviewed; Region: hemC; PRK00072
862908007614	Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of...; Region: HMBS; cl17708
862908007615	domain interfaces; other site
862908007616	active site
862908007617	HMMPfam hit to PF01379, Porphobilinogen deaminase, score 4.5e-55
862908007618	glutamate-1-semialdehyde aminotransferase; Provisional; Region: PRK00062
862908007619	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
862908007620	inhibitor-cofactor binding pocket; inhibition site
862908007621	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908007622	catalytic residue [active]
862908007623	HMMPfam hit to PF00202, Aminotransferase class-III, score 3.8e-65
862908007624	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site.
862908007625	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908007626	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908007627	dimer interface [polypeptide binding]; other site
862908007628	phosphorylation site [posttranslational modification]
862908007629	Histidine kinase-like ATPases; Region: HATPase_c; smart00387
862908007630	ATP binding site [chemical binding]; other site
862908007631	Mg2+ binding site [ion binding]; other site
862908007632	G-X-G motif; other site
862908007633	Signal peptide predicted for BMS2042 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.898 between residues 22 and 23
862908007634	2 probable transmembrane helices predicted for BMS2042 by TMHMM2.0 at aa 7-29 and 60-79
862908007635	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 3e-13
862908007636	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 1.7e-08
862908007637	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
862908007638	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908007639	active site
862908007640	phosphorylation site [posttranslational modification]
862908007641	intermolecular recognition site; other site
862908007642	dimerization interface [polypeptide binding]; other site
862908007643	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
862908007644	DNA binding site [nucleotide binding]
862908007645	HMMPfam hit to PF00072, Response regulator receiver, score 2.3e-30
862908007646	HMMPfam hit to PF00486, Transcriptional regulatory protein, C-terminal, score 1.8e-15
862908007647	The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases; Region: URO-D_CIMS_like; cl00464
862908007648	HMMPfam hit to PF01208, Uroporphyrinogen decarboxylase (URO-D), score 3.5e-50
862908007649	PS00906 Uroporphyrinogen decarboxylase signature 1.
862908007650	PS00907 Uroporphyrinogen decarboxylase signature 2.
862908007651	coproporphyrinogen III oxidase; Provisional; Region: PRK09249
862908007652	HMMPfam hit to PF04055, Radical SAM, score 1.2e-21
862908007653	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908007654	PS00591 Glycosyl hydrolases family 10 active site.
862908007655	HMMPfam hit to PF06969, HemN, C-terminal, score 0.0013
862908007656	Signal peptide predicted for BMS2046 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.946 between residues 18 and 19
862908007657	1 probable transmembrane helix predicted for BMS2046 by TMHMM2.0 at aa 7-29
862908007658	Signal peptide predicted for BMS2047 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.950 between residues 18 and 19
862908007659	1 probable transmembrane helix predicted for BMS2047 by TMHMM2.0 at aa 7-29
862908007660	1 probable transmembrane helix predicted for BMS2049 by TMHMM2.0 at aa 13-35
862908007661	Signal peptide predicted for BMS2049 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 between residues 28 and 29
862908007662	Signal peptide predicted for BMS2050 by SignalP 2.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.903 between residues 42 and 43
862908007663	Signal peptide predicted for BMS2052 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.981 between residues 20 and 21
862908007664	PS00063 Aldo/keto reductase family putative active site signature.
862908007665	Virulence factor BrkB; Region: Virul_fac_BrkB; pfam03631
862908007666	HMMPfam hit to PF03631, Ribonuclease BN, score 2.2e-09
862908007667	6 probable transmembrane helices predicted for BMS2054 by TMHMM2.0 at aa 50-72, 118-140, 153-171, 191-213, 226-248 and 267-289
862908007668	Enoyl-[acyl-carrier-protein]; Region: FabI; COG0623
862908007669	Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR; Region: ENR_SDR; cd05372
862908007670	NAD binding site [chemical binding]; other site
862908007671	homotetramer interface [polypeptide binding]; other site
862908007672	homodimer interface [polypeptide binding]; other site
862908007673	substrate binding site [chemical binding]; other site
862908007674	active site
862908007675	HMMPfam hit to PF00106, Short-chain dehydrogenase/reductase SDR, score 7.9e-09
862908007676	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
862908007677	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908007678	active site
862908007679	phosphorylation site [posttranslational modification]
862908007680	intermolecular recognition site; other site
862908007681	dimerization interface [polypeptide binding]; other site
862908007682	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
862908007683	DNA binding site [nucleotide binding]
862908007684	HMMPfam hit to PF00486, Transcriptional regulatory protein, C-terminal, score 5.4e-16
862908007685	HMMPfam hit to PF00072, Response regulator receiver, score 8.7e-40
862908007686	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908007687	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908007688	dimer interface [polypeptide binding]; other site
862908007689	phosphorylation site [posttranslational modification]
862908007690	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908007691	ATP binding site [chemical binding]; other site
862908007692	Mg2+ binding site [ion binding]; other site
862908007693	G-X-G motif; other site
862908007694	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 3.6e-25
862908007695	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 4.6e-13
862908007696	2 probable transmembrane helices predicted for BMS2057 by TMHMM2.0 at aa 13-35 and 63-85
862908007697	Signal peptide predicted for BMS2057 by SignalP 2.0 HMM (Signal peptide probability 0.841) with cleavage site probability 0.503 between residues 37 and 38
862908007698	2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family; Region: DeoC; cd00959
862908007699	intersubunit interface [polypeptide binding]; other site
862908007700	active site
862908007701	catalytic residue [active]
862908007702	HMMPfam hit to PF01791, Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase, score 2.6e-105
862908007703	NADP oxidoreductase coenzyme F420-dependent; Region: F420_oxidored; cl17232
862908007704	Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]; Region: ProC; COG0345
862908007705	HMMPfam hit to PF01089, Delta 1-pyrroline-5-carboxylate reductase, score 7.7e-44
862908007706	Proline dehydrogenase; Region: Pro_dh; cl03282
862908007707	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
862908007708	1-pyrroline-5-carboxylate dehydrogenase; Provisional; Region: PRK03137
862908007709	NAD(P) binding site [chemical binding]; other site
862908007710	catalytic residues [active]
862908007711	HMMPfam hit to PF00171, Aldehyde dehydrogenase, score 9.2e-81
862908007712	PS00070 Aldehyde dehydrogenases cysteine active site.
862908007713	HMMPfam hit to PF01619, Proline dehydrogenase, score 7.1e-41
862908007714	FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784
862908007715	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908007716	active site
862908007717	phosphorylation site [posttranslational modification]
862908007718	intermolecular recognition site; other site
862908007719	dimerization interface [polypeptide binding]; other site
862908007720	HMMPfam hit to PF00072, Response regulator receiver, score 4e-06
862908007721	Signal peptide predicted for BMS2063 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.996 between residues 21 and 22
862908007722	Signal peptide predicted for BMS2064 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.578 between residues 18 and 19
862908007723	Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]; Region: FepA; COG4771
862908007724	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
862908007725	N-terminal plug; other site
862908007726	ligand-binding site [chemical binding]; other site
862908007727	Signal peptide predicted for BMS2065 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.974 between residues 29 and 30
862908007728	HMMPfam hit to PF07715, , score 7.6e-22
862908007729	HMMPfam hit to PF00593, TonB-dependent receptor, score 6.9e-16
862908007730	Bacterial proteins similar to Porphyromonas gingivalis HmuY; Region: HmuY; cd12105
862908007731	Bacterial proteins similar to Porphyromonas gingivalis HmuY; Region: HmuY; cd12105
862908007732	Signal peptide predicted for BMS2066 by SignalP 2.0 HMM (Signal peptide probability 0.943) with cleavage site probability 0.424 between residues 17 and 18
862908007733	SWI complex, BAF60b domains; Region: SWIB; smart00151
862908007734	HMMPfam hit to PF02201, SWIB complex, BAF60b, score 6.8e-32
862908007735	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl17182
862908007736	Cytochrome c553 [Energy production and conversion]; Region: COG2863
862908007737	HMMPfam hit to PF00034, Cytochrome c, class I, score 4.1e-09
862908007738	PS00190 Cytochrome c family heme-binding site signature.
862908007739	Signal peptide predicted for BMS2069 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.985 between residues 20 and 21
862908007740	Thiamine pyrophosphokinase; Region: TPK; cl08415
862908007741	active site
862908007742	dimerization interface [polypeptide binding]; other site
862908007743	thiamine binding site [chemical binding]; other site
862908007744	HMMPfam hit to PF04263, Thiamin pyrophosphokinase, catalytic region, score 0.00035
862908007745	Penicillin amidase; Region: Penicil_amidase; pfam01804
862908007746	Penicillin G acylase (PGA) belongs to a family of beta-lactam acylases that includes cephalosporin acylase (CA) and aculeacin A acylase. PGA and CA are crucial for the production of backbone chemicals like 6-aminopenicillanic acid and...; Region: Ntn_PGA_like; cd03747
862908007747	active site
862908007748	HMMPfam hit to PF01804, Peptidase S45, penicillin amidase, score 3.4e-133
862908007749	1 probable transmembrane helix predicted for BMS2072 by TMHMM2.0 at aa 9-31
862908007750	Protein of unknown function (DUF1624); Region: DUF1624; pfam07786
862908007751	7 probable transmembrane helices predicted for BMS2073 by TMHMM2.0 at aa 13-32, 47-69, 76-98, 103-122, 127-149, 159-179 and 200-222
862908007752	PTS system sorbose-specific iic component; Region: EII-Sor; cl01506
862908007753	4 probable transmembrane helices predicted for BMS2074 by TMHMM2.0 at aa 30-52, 72-91, 98-120 and 527-544
862908007754	Cytochrome C assembly protein; Region: Cytochrom_C_asm; cl00504
862908007755	Signal peptide predicted for BMS2075 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.999 between residues 18 and 19
862908007756	9 probable transmembrane helices predicted for BMS2075 by TMHMM2.0 at aa 216-238, 243-265, 275-294, 301-323, 343-365, 385-407, 422-441, 448-470 and 485-507
862908007757	HMMPfam hit to PF01578, Cytochrome c assembly protein, score 5.1e-21
862908007758	ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488
862908007759	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
862908007760	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
862908007761	ABC transporter; Region: ABC_tran_2; pfam12848
862908007762	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
862908007763	ABC transporter; Region: ABC_tran_2; pfam12848
862908007764	HMMPfam hit to PF00005, ABC transporter, score 5.7e-47
862908007765	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007766	PS00211 ABC transporters family signature.
862908007767	HMMPfam hit to PF00005, ABC transporter, score 8.1e-42
862908007768	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007769	PS00211 ABC transporters family signature.
862908007770	Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial...; Region: Aldo_ket_red; cd06660
862908007771	catalytic tetrad [active]
862908007772	Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]; Region: UgpQ; COG0584
862908007773	Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily; Region: PI-PLCc_GDPD_SF; cl14615
862908007774	active site
862908007775	catalytic site [active]
862908007776	HMMPfam hit to PF03009, Glycerophosphoryl diester phosphodiesterase, score 2.6e-16
862908007777	PS00037 Myb DNA-binding domain repeat signature 1.
862908007778	Signal peptide predicted for BMS2080 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 between residues 20 and 21
862908007779	SNARE associated Golgi protein; Region: SNARE_assoc; cl00429
862908007780	2 probable transmembrane helices predicted for BMS2081 by TMHMM2.0 at aa 37-59 and 64-86
862908007781	Protein of unknown function (DUF3050); Region: DUF3050; pfam11251
862908007782	helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cl17320
862908007783	non-specific DNA interactions [nucleotide binding]; other site
862908007784	DNA binding site [nucleotide binding]
862908007785	sequence specific DNA binding site [nucleotide binding]; other site
862908007786	putative cAMP binding site [chemical binding]; other site
862908007787	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
862908007788	Coenzyme A binding pocket [chemical binding]; other site
862908007789	HMMPfam hit to PF00583, GCN5-related N-acetyltransferase, score 1.5e-08
862908007790	RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; Region: Rel-Spo_like; cl11966
862908007791	metal binding triad [ion binding]; metal-binding site
862908007792	HMMPfam hit to PF01743, Polynucleotide adenylyltransferase, score 9.2e-06
862908007793	Transcriptional regulator [Transcription]; Region: LysR; COG0583
862908007794	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908007795	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
862908007796	dimerization interface [polypeptide binding]; other site
862908007797	HMMPfam hit to PF03466, LysR, substrate-binding, score 1.3e-15
862908007798	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 1.1e-21
862908007799	PS00044 Bacterial regulatory proteins, lysR family signature.
862908007800	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]; Region: DegQ; COG0265
862908007801	Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad...; Region: Tryp_SPc; cl00149
862908007802	HMMPfam hit to PF00089, Peptidase S1, chymotrypsin, score 2e-05
862908007803	PS00673 Serine proteases, V8 family, serine active site.
862908007804	PS00134 Serine proteases, trypsin family, histidine active site.
862908007805	PS00672 Serine proteases, V8 family, histidine active site.
862908007806	Signal peptide predicted for BMS2088 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.986 between residues 19 and 20
862908007807	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908007808	Signal peptide predicted for BMS2089 by SignalP 2.0 HMM (Signal peptide probability 0.975) with cleavage site probability 0.547 between residues 18 and 19
862908007809	Signal peptide predicted for BMS2090 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.976 between residues 20 and 21
862908007810	V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]; Region: COG3591
862908007811	HMMPfam hit to PF00089, Peptidase S1, chymotrypsin, score 0.00012
862908007812	PS00134 Serine proteases, trypsin family, histidine active site.
862908007813	Signal peptide predicted for BMS2091 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.923 between residues 17 and 18
862908007814	elongation factor G; Reviewed; Region: PRK00007
862908007815	Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis; Region: EF-G; cd01886
862908007816	G1 box; other site
862908007817	putative GEF interaction site [polypeptide binding]; other site
862908007818	GTP/Mg2+ binding site [chemical binding]; other site
862908007819	Switch I region; other site
862908007820	G2 box; other site
862908007821	G3 box; other site
862908007822	Switch II region; other site
862908007823	G4 box; other site
862908007824	G5 box; other site
862908007825	mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating...; Region: mtEFG1_II_like; cd04091
862908007826	EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2...; Region: EFG_mtEFG1_IV; cd01434
862908007827	EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G.  Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2...; Region: EFG_mtEFG_C; cd03713
862908007828	HMMPfam hit to PF00679, Elongation factor G, C-terminal, score 2.4e-46
862908007829	HMMPfam hit to PF03764, Elongation factor G, domain IV, score 2.4e-54
862908007830	HMMPfam hit to PF03144, Elongation factor Tu, domain 2, score 1.8e-18
862908007831	HMMPfam hit to PF00009, Protein synthesis factor, GTP-binding, score 4.9e-97
862908007832	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007833	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
862908007834	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
862908007835	substrate binding pocket [chemical binding]; other site
862908007836	membrane-bound complex binding site; other site
862908007837	hinge residues; other site
862908007838	Signal peptide predicted for BMS2094 by SignalP 2.0 HMM (Signal peptide probability 0.772) with cleavage site probability 0.732 between residues 19 and 20
862908007839	Signal peptide predicted for BMS2096 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.574 between residues 21 and 22
862908007840	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007841	Peptidase S8 family domain in Subtilisin-like proteins; Region: Peptidases_S8_Subtilisin_like; cd07473
862908007842	catalytic triad [active]
862908007843	putative active site [active]
862908007844	HMMPfam hit to PF00082, Peptidase S8 and S53, subtilisin, kexin, sedolisin, score 5.2e-48
862908007845	PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site.
862908007846	PS00138 Serine proteases, subtilase family, serine active site.
862908007847	PS00137 Serine proteases, subtilase family, histidine active site.
862908007848	PS00136 Serine proteases, subtilase family, aspartic acid active site.
862908007849	Signal peptide predicted for BMS2097 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 between residues 19 and 20
862908007850	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
862908007851	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
862908007852	substrate binding pocket [chemical binding]; other site
862908007853	membrane-bound complex binding site; other site
862908007854	hinge residues; other site
862908007855	Signal peptide predicted for BMS2098 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.999 between residues 19 and 20
862908007856	1 probable transmembrane helix predicted for BMS2098 by TMHMM2.0 at aa 5-27
862908007857	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007858	Signal peptide predicted for BMS2099 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.538 between residues 22 and 23
862908007859	Signal peptide predicted for BMS2100 by SignalP 2.0 HMM (Signal peptide probability 0.965) with cleavage site probability 0.737 between residues 19 and 20
862908007860	MarC family integral membrane protein; Region: MarC; cl00919
862908007861	HMMPfam hit to PF01914, Multiple antibiotic resistance (MarC)-related proteins, score 5.3e-50
862908007862	6 probable transmembrane helices predicted for BMS2101 by TMHMM2.0 at aa 10-32, 44-66, 70-92, 115-137, 147-166 and 187-209
862908007863	D-Ala-D-Ala carboxypeptidase 3 (S13) family; Region: Peptidase_S13; cl17429
862908007864	D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family; Region: PBP4; TIGR00666
862908007865	D-Ala-D-Ala carboxypeptidase 3 (S13) family; Region: Peptidase_S13; cl17429
862908007866	Signal peptide predicted for BMS2102 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 between residues 21 and 22
862908007867	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
862908007868	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
862908007869	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
862908007870	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
862908007871	1 probable transmembrane helix predicted for BMS2103 by TMHMM2.0 at aa 5-27
862908007872	HMMPfam hit to PF00023, Ankyrin, score 0.022
862908007873	HMMPfam hit to PF00023, Ankyrin, score 3.6e-06
862908007874	HMMPfam hit to PF00023, Ankyrin, score 0.089
862908007875	HMMPfam hit to PF00023, Ankyrin, score 0.00012
862908007876	HMMPfam hit to PF00023, Ankyrin, score 2.3e-05
862908007877	Signal peptide predicted for BMS2104 by SignalP 2.0 HMM (Signal peptide probability 0.926) with cleavage site probability 0.519 between residues 23 and 24
862908007878	Signal peptide predicted for BMS2106 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.489 between residues 21 and 22
862908007879	MltA-interacting protein MipA; Region: MipA; cl01504
862908007880	HMMPfam hit to PF06629, MltA-interacting MipA, score 0.0062
862908007881	1 probable transmembrane helix predicted for BMS2107 by TMHMM2.0 at aa 13-32
862908007882	Signal peptide predicted for BMS2107 by SignalP 2.0 HMM (Signal peptide probability 0.894) with cleavage site probability 0.355 between residues 31 and 32
862908007883	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
862908007884	11 probable transmembrane helices predicted for BMS2109 by TMHMM2.0 at aa 13-32, 329-351, 371-393, 428-450, 460-482, 518-535, 862-884, 891-913, 918-940, 966-988 and 1003-1025
862908007885	HMMPfam hit to PF00873, Acriflavin resistance protein, score 4.3e-88
862908007886	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007887	Outer membrane efflux protein; Region: OEP; pfam02321
862908007888	Signal peptide predicted for BMS2110 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.892 between residues 25 and 26
862908007889	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
862908007890	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
862908007891	HMMPfam hit to PF00440, Bacterial regulatory protein, TetR, score 3.3e-08
862908007892	Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]; Region: COG2220
862908007893	Beta-lactamase superfamily domain; Region: Lactamase_B_2; pfam12706
862908007894	Signal peptide predicted for BMS2114 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.983 between residues 18 and 19
862908007895	Signal peptide predicted for BMS2115 by SignalP 2.0 HMM (Signal peptide probability 0.893) with cleavage site probability 0.876 between residues 41 and 42
862908007896	Signal peptide predicted for BMS2116 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.998 between residues 19 and 20
862908007897	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
862908007898	IHF dimer interface [polypeptide binding]; other site
862908007899	IHF - DNA interface [nucleotide binding]; other site
862908007900	HMMPfam hit to PF00216, Histone-like bacterial DNA-binding protein, score 3.7e-21
862908007901	PS00045 Bacterial histone-like DNA-binding proteins signature.
862908007902	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
862908007903	cysteine desulfurase NifS; Region: FeS_nifS; TIGR03402
862908007904	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
862908007905	catalytic residue [active]
862908007906	HMMPfam hit to PF00266, Aminotransferase, class V, score 2e-25
862908007907	Transcriptional regulator; Region: Rrf2; cl17282
862908007908	Rrf2 family protein; Region: rrf2_super; TIGR00738
862908007909	HMMPfam hit to PF02082, Protein of unknown function UPF0074, score 3.1e-37
862908007910	Uncharacterized P-loop hydrolase UPF0079; Region: UPF0079; cl00520
862908007911	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007912	YjeF-related protein N-terminus; Region: YjeF_N; pfam03853
862908007913	B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily; Region: YXKO-related; cd01171
862908007914	putative substrate binding site [chemical binding]; other site
862908007915	putative ATP binding site [chemical binding]; other site
862908007916	HMMPfam hit to PF01256, Protein of unknown function UPF0031, score 2.3e-53
862908007917	PS01050 Uncharacterized protein family UPF0031 signature 2.
862908007918	PS01049 Uncharacterized protein family UPF0031 signature 1.
862908007919	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908007920	HMMPfam hit to PF03853, YjeF-related protein, N-terminal, score 1.7e-23
862908007921	pyridoxine 5'-phosphate synthase; Provisional; Region: PRK05265
862908007922	active site
862908007923	hydrophilic channel; other site
862908007924	dimerization interface [polypeptide binding]; other site
862908007925	catalytic residues [active]
862908007926	active site lid [active]
862908007927	HMMPfam hit to PF03740, Pyridoxal phosphate biosynthetic protein PdxJ, score 2.7e-76
862908007928	phosphoglucosamine mutase; Provisional; Region: glmM; PRK14314
862908007929	GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of...; Region: GlmM; cd05802
862908007930	active site
862908007931	substrate binding site [chemical binding]; other site
862908007932	metal binding site [ion binding]; metal-binding site
862908007933	HMMPfam hit to PF00408, Phosphoglucomutase/phosphomannomutase C terminal, score 5.2e-05
862908007934	HMMPfam hit to PF02880, Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III, score 1.8e-25
862908007935	HMMPfam hit to PF02879, Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II, score 3.4e-27
862908007936	HMMPfam hit to PF02878, Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I, score 7.4e-53
862908007937	YbbR-like protein; Region: YbbR; pfam07949
862908007938	Signal peptide predicted for BMS2125 by SignalP 2.0 HMM (Signal peptide probability 0.773) with cleavage site probability 0.750 between residues 36 and 37
862908007939	1 probable transmembrane helix predicted for BMS2125 by TMHMM2.0 at aa 13-35
862908007940	Uncharacterized conserved protein [Function unknown]; Region: COG1624
862908007941	DisA bacterial checkpoint controller nucleotide-binding; Region: DisA_N; pfam02457
862908007942	HMMPfam hit to PF02457, Protein of unknown function DUF147, score 6.4e-55
862908007943	2 probable transmembrane helices predicted for BMS2126 by TMHMM2.0 at aa 36-58 and 60-82
862908007944	Uncharacterized protein family UPF0047; Region: UPF0047; cl00439
862908007945	PilZ domain; Region: PilZ; pfam07238
862908007946	Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]; Region: FhlA; COG3604
862908007947	Domain present in phytochromes and cGMP-specific phosphodiesterases; Region: GAF; smart00065
862908007948	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908007949	Walker A motif; other site
862908007950	ATP binding site [chemical binding]; other site
862908007951	Walker B motif; other site
862908007952	arginine finger; other site
862908007953	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
862908007954	HMMPfam hit to PF02954, Helix-turn-helix, Fis-type, score 7.8e-09
862908007955	HMMPfam hit to PF00158, Sigma-54 factor, interaction region, score 1.1e-18
862908007956	PS00017 ATP/GTP-binding site motif A (P-loop).
862908007957	HMMPfam hit to PF01590, GAF, score 1.2e-16
862908007958	Adenosylmethionine decarboxylase; Region: SAM_decarbox; cl03253
862908007959	HMMPfam hit to PF01536, S-adenosylmethionine decarboxylase, score 7e-36
862908007960	PS01336 S-adenosylmethionine decarboxylase signature.
862908007961	spermidine synthase; Provisional; Region: PRK00811
862908007962	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908007963	S-adenosylmethionine binding site [chemical binding]; other site
862908007964	HMMPfam hit to PF01564, Spermine synthase, score 4.1e-95
862908007965	EVE domain; Region: EVE; cl00728
862908007966	HMMPfam hit to PF04543, Protein of unknown function DUF589, score 5.4e-84
862908007967	CHASE4 domain; Region: CHASE4; cl01308
862908007968	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908007969	HAMP domain; Region: HAMP; pfam00672
862908007970	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908007971	dimer interface [polypeptide binding]; other site
862908007972	phosphorylation site [posttranslational modification]
862908007973	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908007974	ATP binding site [chemical binding]; other site
862908007975	Mg2+ binding site [ion binding]; other site
862908007976	G-X-G motif; other site
862908007977	2 probable transmembrane helices predicted for BMS2133 by TMHMM2.0 at aa 10-31 and 255-277
862908007978	HMMPfam hit to PF00672, Histidine kinase, HAMP region, score 1.6e-07
862908007979	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 2.3e-07
862908007980	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 6.4e-25
862908007981	arginine decarboxylase; Provisional; Region: PRK05354
862908007982	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase; Region: PLPDE_III_ADC; cd06830
862908007983	dimer interface [polypeptide binding]; other site
862908007984	active site
862908007985	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
862908007986	catalytic residues [active]
862908007987	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes; Region: PLPDE_III; cl00261
862908007988	HMMPfam hit to PF00278, Orn/DAP/Arg decarboxylase 2, score 1.4e-15
862908007989	HMMPfam hit to PF02784, Orn/DAP/Arg decarboxylase 2, score 3.6e-54
862908007990	PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2.
862908007991	PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.
862908007992	Agmatinase and related proteins; Region: Agmatinase-like_2; cd11593
862908007993	agmatinase; Region: agmatinase; TIGR01230
862908007994	putative active site [active]
862908007995	Mn binding site [ion binding]; other site
862908007996	HMMPfam hit to PF00491, Arginase/agmatinase/formiminoglutamase, score 1.5e-17
862908007997	PS01053 Arginase family signature 3.
862908007998	PS00148 Arginase family signature 2.
862908007999	PS00147 Arginase family signature 1.
862908008000	M14 family of metallocarboxypeptidases and related proteins; Region: Peptidase_M14_like; cl11393
862908008001	active site
862908008002	Zn binding site [ion binding]; other site
862908008003	HMMPfam hit to PF00246, Peptidase M14, carboxypeptidase A, score 1.7e-06
862908008004	Signal peptide predicted for BMS2136 by SignalP 2.0 HMM (Signal peptide probability 0.616) with cleavage site probability 0.217 between residues 21 and 22
862908008005	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908008006	alpha-L-glutamate ligases, RimK family; Region: rimK_fam; TIGR00768
862908008007	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908008008	Phosphatidylserine/phosphatidylglycerophosphate/car diolipin synthases and related enzymes [Lipid metabolism]; Region: Cls; COG1502
862908008009	Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_1; cd09111
862908008010	putative active site [active]
862908008011	catalytic site [active]
862908008012	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
862908008013	putative active site [active]
862908008014	catalytic site [active]
862908008015	HMMPfam hit to PF00614, Phospholipase D/Transphosphatidylase, score 0.32
862908008016	HMMPfam hit to PF00614, Phospholipase D/Transphosphatidylase, score 0.0075
862908008017	Signal peptide predicted for BMS2138 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.932 between residues 22 and 23
862908008018	BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; cl01093
862908008019	Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]; Region: Bfr; COG2193
862908008020	Bacterioferritin, ferritin-like diiron-binding domain; Region: Bacterioferritin; cd00907
862908008021	heme binding site [chemical binding]; other site
862908008022	ferroxidase pore; other site
862908008023	ferroxidase diiron center [ion binding]; other site
862908008024	HMMPfam hit to PF00210, Ferritin and Dps, score 7.6e-49
862908008025	Signal peptide predicted for BMS2141 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.547 between residues 20 and 21
862908008026	ferrochelatase; Reviewed; Region: hemH; PRK00035
862908008027	Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_N; cd03411
862908008028	C-terminal domain interface [polypeptide binding]; other site
862908008029	active site
862908008030	Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_C; cd00419
862908008031	active site
862908008032	N-terminal domain interface [polypeptide binding]; other site
862908008033	drug resistance transporter, Bcr/CflA subfamily; Region: efflux_Bcr_CflA; TIGR00710
862908008034	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
862908008035	putative substrate translocation pore; other site
862908008036	13 probable transmembrane helices predicted for BMS2142 by TMHMM2.0 at aa 390-412, 424-443, 448-470, 482-501, 506-528, 541-563, 578-600, 640-662, 672-691, 703-725, 729-751, 764-783 and 793-810
862908008037	HMMPfam hit to PF07690, , score 9.7e-47
862908008038	HMMPfam hit to PF00762, Ferrochelatase, score 1.5e-47
862908008039	7-cyano-7-deazaguanine reductase; Provisional; Region: PRK13258
862908008040	HMMPfam hit to PF01227, GTP cyclohydrolase I, score 1.6e-44
862908008041	mttA/Hcf106 family; Region: MttA_Hcf106; cl00788
862908008042	HMMPfam hit to PF02416, Bacterial sec-independent translocation protein mttA/Hcf106, score 7.1e-14
862908008043	SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars; Region: SIS; cl00389
862908008044	SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars; Region: SIS; cl00389
862908008045	Response regulator receiver domain; Region: Response_reg; pfam00072
862908008046	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908008047	active site
862908008048	phosphorylation site [posttranslational modification]
862908008049	intermolecular recognition site; other site
862908008050	dimerization interface [polypeptide binding]; other site
862908008051	HMMPfam hit to PF00072, Response regulator receiver, score 1.2e-05
862908008052	Predicted RNA-binding protein (contains KH domain) [General function prediction only]; Region: COG1837
862908008053	hypothetical protein; Provisional; Region: PRK00468
862908008054	Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Region: RpsP; COG0228
862908008055	HMMPfam hit to PF00886, Ribosomal protein S16, score 1.2e-15
862908008056	PS00036 bZIP transcription factors basic domain signature.
862908008057	Signal peptide predicted for BMS2149 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.554 between residues 19 and 20
862908008058	Domain of unknown function (DUF1768); Region: DUF1768; cl01271
862908008059	Signal peptide predicted for BMS2150 by SignalP 2.0 HMM (Signal peptide probability 0.932) with cleavage site probability 0.602 between residues 32 and 33
862908008060	Signal peptide predicted for BMS2152 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.618 between residues 21 and 22
862908008061	1 probable transmembrane helix predicted for BMS2152 by TMHMM2.0 at aa 5-24
862908008062	Chaperone of endosialidase; Region: Peptidase_S74; pfam13884
862908008063	Signal peptide predicted for BMS2153 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.833 between residues 17 and 18
862908008064	HMMPfam hit to PF05594, Haemagluttinin, score 3.3
862908008065	Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular...; Region: FReD; cl00085
862908008066	Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular...; Region: FReD; cl00085
862908008067	Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular...; Region: FReD; cl00085
862908008068	Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular...; Region: FReD; cl00085
862908008069	gamma-gamma dimer interface [polypeptide binding]; other site
862908008070	Ca2+ binding site [ion binding]; other site
862908008071	polymerization pocket; other site
862908008072	Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular...; Region: FReD; cl00085
862908008073	Signal peptide predicted for BMS2154 by SignalP 2.0 HMM (Signal peptide probability 0.988) with cleavage site probability 0.622 between residues 18 and 19
862908008074	HMMPfam hit to PF00147, Fibrinogen, beta/gamma chain, C-terminal globular, score 8.7e-08
862908008075	signal recognition particle protein; Provisional; Region: PRK10867
862908008076	SRP54-type protein, helical bundle domain; Region: SRP54_N; smart00963
862908008077	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
862908008078	Signal peptide binding domain; Region: SRP_SPB; pfam02978
862908008079	HMMPfam hit to PF02978, Signal peptide binding (SRP54) M-domain, score 2.7e-40
862908008080	HMMPfam hit to PF00448, GTP-binding signal recognition particle SRP54, G-domain, score 1.9e-96
862908008081	PS00300 SRP54-type proteins GTP-binding domain signature.
862908008082	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008083	HMMPfam hit to PF02881, GTP-binding signal recognition particle SRP54, G-domain, score 5.4e-30
862908008084	Predicted phosphatases [General function prediction only]; Region: Gph; COG0546
862908008085	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
862908008086	motif II; other site
862908008087	HMMPfam hit to PF00702, Haloacid dehalogenase-like hydrolase, score 1.3e-14
862908008088	putative TIM-barrel protein, nifR3 family; Region: nifR3_yhdG; TIGR00737
862908008089	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
862908008090	FMN binding site [chemical binding]; other site
862908008091	active site
862908008092	catalytic residues [active]
862908008093	substrate binding site [chemical binding]; other site
862908008094	HMMPfam hit to PF01207, Dihydrouridine synthase, DuS, score 9.5e-66
862908008095	PS01136 Uncharacterized protein family UPF0034 signature.
862908008096	Cytochrome c, mono- and diheme variants [Energy production and conversion]; Region: CccA; COG2010
862908008097	Cytochrome c; Region: Cytochrom_C; pfam00034
862908008098	HMMPfam hit to PF00034, Cytochrome c, class I, score 1.3e-10
862908008099	PS00190 Cytochrome c family heme-binding site signature.
862908008100	Signal peptide predicted for BMS2158 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 between residues 19 and 20
862908008101	Signal peptide predicted for BMS2159 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 between residues 25 and 26
862908008102	Signal peptide predicted for BMS2160 by SignalP 2.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.502 between residues 38 and 39
862908008103	1 probable transmembrane helix predicted for BMS2160 by TMHMM2.0 at aa 7-26
862908008104	Signal peptide predicted for BMS2161 by SignalP 2.0 HMM (Signal peptide probability 0.864) with cleavage site probability 0.859 between residues 14 and 15
862908008105	Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490
862908008106	putative catalytic site [active]
862908008107	putative metal binding site [ion binding]; other site
862908008108	putative phosphate binding site [ion binding]; other site
862908008109	HMMPfam hit to PF03372, Endonuclease/exonuclease/phosphatase, score 5.5e-11
862908008110	Peptidase domain in the S8 and S53 families; Region: Peptidases_S8_S53; cl10459
862908008111	Peptidase domain in the S8 and S53 families; Region: Peptidases_S8_S53; cl10459
862908008112	catalytic residues [active]
862908008113	HMMPfam hit to PF00082, Peptidase S8 and S53, subtilisin, kexin, sedolisin, score 1.1e-06
862908008114	Signal peptide predicted for BMS2164 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.654 between residues 30 and 31
862908008115	1 probable transmembrane helix predicted for BMS2164 by TMHMM2.0 at aa 7-29
862908008116	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908008117	Protein of unknown function (DUF523); Region: DUF523; cl00733
862908008118	HMMPfam hit to PF04463, Protein of unknown function DUF523, score 1.9e-23
862908008119	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908008120	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908008121	dimer interface [polypeptide binding]; other site
862908008122	phosphorylation site [posttranslational modification]
862908008123	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908008124	ATP binding site [chemical binding]; other site
862908008125	Mg2+ binding site [ion binding]; other site
862908008126	G-X-G motif; other site
862908008127	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 3.6e-26
862908008128	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 5.3e-10
862908008129	2 probable transmembrane helices predicted for BMS2166 by TMHMM2.0 at aa 17-39 and 156-178
862908008130	Signal peptide predicted for BMS2166 by SignalP 2.0 HMM (Signal peptide probability 0.977) with cleavage site probability 0.673 between residues 34 and 35
862908008131	flagellin; Provisional; Region: PRK12802
862908008132	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
862908008133	Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700
862908008134	HMMPfam hit to PF00700, Flagellin, C-terminal, score 1.1e-27
862908008135	HMMPfam hit to PF00669, Flagellin, N-terminal, score 4.8e-43
862908008136	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
862908008137	Zn2+ binding site [ion binding]; other site
862908008138	Mg2+ binding site [ion binding]; other site
862908008139	chemotaxis regulatory protein CheY; Provisional; Region: PRK10610
862908008140	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908008141	active site
862908008142	phosphorylation site [posttranslational modification]
862908008143	intermolecular recognition site; other site
862908008144	dimerization interface [polypeptide binding]; other site
862908008145	HMMPfam hit to PF00072, Response regulator receiver, score 2.8e-24
862908008146	HMMPfam hit to PF01627, Hpt, score 9.4e-07
862908008147	Predicted inhibitor of MCP methylation, homolog of CheC [Cell motility and secretion]; Region: COG1406
862908008148	Chemotaxis phosphatase CheX; Region: CheX; pfam13690
862908008149	Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain; Region: MPP_YbbF-LpxH; cd07398
862908008150	putative active site [active]
862908008151	putative metal binding site [ion binding]; other site
862908008152	1 probable transmembrane helix predicted for BMS2173 by TMHMM2.0 at aa 239-261
862908008153	Signal peptide predicted for BMS2174 by SignalP 2.0 HMM (Signal peptide probability 0.971) with cleavage site probability 0.484 between residues 17 and 18
862908008154	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908008155	1 probable transmembrane helix predicted for BMS2176 by TMHMM2.0 at aa 12-31
862908008156	Signal peptide predicted for BMS2176 by SignalP 2.0 HMM (Signal peptide probability 0.961) with cleavage site probability 0.944 between residues 28 and 29
862908008157	Signal peptide predicted for BMS2177 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.960 between residues 20 and 21
862908008158	This hit extended beyond the end of the feature by 1 aa and was clipped.; PS00294 Prenyl group binding site (CAAX box).
862908008159	1 probable transmembrane helix predicted for BMS2179 by TMHMM2.0 at aa 7-26
862908008160	Signal peptide predicted for BMS2179 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.936 between residues 25 and 26
862908008161	Signal peptide predicted for BMS2180 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.992 between residues 26 and 27
862908008162	CamS sex pheromone cAM373 precursor; Region: CamS; pfam07537
862908008163	excinuclease ABC subunit B; Provisional; Region: PRK05298
862908008164	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
862908008165	ATP binding site [chemical binding]; other site
862908008166	putative Mg++ binding site [ion binding]; other site
862908008167	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
862908008168	nucleotide binding region [chemical binding]; other site
862908008169	ATP-binding site [chemical binding]; other site
862908008170	Ultra-violet resistance protein B; Region: UvrB; pfam12344
862908008171	UvrB/uvrC motif; Region: UVR; pfam02151
862908008172	HMMPfam hit to PF02151, UvrB/UvrC protein, score 5.9e-11
862908008173	HMMPfam hit to PF00271, Helicase, C-terminal, score 3.7e-20
862908008174	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 9.3e-07
862908008175	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008176	diaminopimelate decarboxylase; Region: lysA; TIGR01048
862908008177	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase; Region: PLPDE_III_DapDC; cd06828
862908008178	active site
862908008179	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
862908008180	substrate binding site [chemical binding]; other site
862908008181	catalytic residues [active]
862908008182	dimer interface [polypeptide binding]; other site
862908008183	HMMPfam hit to PF02784, Orn/DAP/Arg decarboxylase 2, score 6.2e-55
862908008184	PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.
862908008185	PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2.
862908008186	HMMPfam hit to PF00278, Orn/DAP/Arg decarboxylase 2, score 2.3e-36
862908008187	CarD-like/TRCF domain; Region: CarD_CdnL_TRCF; cl00588
862908008188	HMMPfam hit to PF02559, Transcription factor CarD, score 1.3e-15
862908008189	Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside...; Region: NDPk_I; cd04413
862908008190	active site
862908008191	multimer interface [polypeptide binding]; other site
862908008192	HMMPfam hit to PF00334, Nucleoside diphosphate kinase, score 4.1e-72
862908008193	succinyl-CoA synthetase subunit alpha; Validated; Region: PRK05678
862908008194	CoA binding domain; Region: CoA_binding; smart00881
862908008195	CoA-ligase; Region: Ligase_CoA; pfam00549
862908008196	HMMPfam hit to PF00549, ATP-citrate lyase/succinyl-CoA ligase, score 8.7e-52
862908008197	PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site.
862908008198	PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1.
862908008199	HMMPfam hit to PF02629, CoA-binding, score 1.6e-58
862908008200	succinyl-CoA synthetase subunit beta; Provisional; Region: sucC; PRK00696
862908008201	ATP-grasp domain; Region: ATP-grasp_2; pfam08442
862908008202	CoA-ligase; Region: Ligase_CoA; pfam00549
862908008203	HMMPfam hit to PF00549, ATP-citrate lyase/succinyl-CoA ligase, score 2.2e-79
862908008204	PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3.
862908008205	HMMPfam hit to PF02222, ATP-dependent carboxylate-amine ligase-like, ATP-grasp, score 1.1e-22
862908008206	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008207	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908008208	Q-loop/lid; other site
862908008209	ABC transporter signature motif; other site
862908008210	Metallo-beta-lactamase superfamily; Region: Lactamase_B; smart00849
862908008211	D-loop; other site
862908008212	HMMPfam hit to PF00753, Beta-lactamase-like, score 4.7e-14
862908008213	PS00136 Serine proteases, subtilase family, aspartic acid active site.
862908008214	Domain of unknown function (DUF4339); Region: DUF4339; pfam14237
862908008215	1 probable transmembrane helix predicted for BMS2189 by TMHMM2.0 at aa 247-269
862908008216	Signal peptide predicted for BMS2190 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.949 between residues 19 and 20
862908008217	Arginase-like and histone-like hydrolases; Region: Arginase_HDAC; cl17011
862908008218	active site
862908008219	metal binding site [ion binding]; metal-binding site
862908008220	PS00148 Arginase family signature 2.
862908008221	Signal peptide predicted for BMS2195 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.990 between residues 23 and 24
862908008222	succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; Region: sdhC_b558_fam; TIGR02046
862908008223	Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum. SQR catalyzes the oxidation of succinate to fumarate...; Region: SQR_TypeB_2_TM; cd03498
862908008224	putative Iron-sulfur protein interface [polypeptide binding]; other site
862908008225	proximal heme binding site [chemical binding]; other site
862908008226	distal heme binding site [chemical binding]; other site
862908008227	putative dimer interface [polypeptide binding]; other site
862908008228	5 probable transmembrane helices predicted for BMS2196 by TMHMM2.0 at aa 21-43, 61-83, 104-126, 158-180 and 201-223
862908008229	succinate dehydrogenase flavoprotein subunit; Reviewed; Region: sdhA; PRK07573
862908008230	L-aspartate oxidase; Provisional; Region: PRK06175
862908008231	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
862908008232	Signal peptide predicted for BMS2197 by SignalP 2.0 HMM (Signal peptide probability 0.641) with cleavage site probability 0.477 between residues 53 and 54
862908008233	HMMPfam hit to PF00890, Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal, score 6.5e-46
862908008234	HMMPfam hit to PF02910, Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal, score 4.8e-19
862908008235	succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated; Region: PRK07570
862908008236	2Fe-2S iron-sulfur cluster binding domain; Region: Fer2_3; pfam13085
862908008237	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
862908008238	HMMPfam hit to PF00037, 4Fe-4S ferredoxin, iron-sulfur binding, score 0.0015
862908008239	SprT homologues; Region: SprT; cl01182
862908008240	Protein of unknown function (DUF2786); Region: DUF2786; pfam10979
862908008241	PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria.  Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443
862908008242	CoenzymeA binding site [chemical binding]; other site
862908008243	subunit interaction site [polypeptide binding]; other site
862908008244	PHB binding site; other site
862908008245	HMMPfam hit to PF03061, Thioesterase superfamily, score 1.6e-08
862908008246	Uncharacterized small membrane protein [Function unknown]; Region: COG2363
862908008247	Signal peptide predicted for BMS2201 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.992 between residues 30 and 31
862908008248	HMMPfam hit to PF04241, Protein of unknown function DUF423, score 1.9e-36
862908008249	4 probable transmembrane helices predicted for BMS2201 by TMHMM2.0 at aa 12-31, 46-63, 75-97 and 101-123
862908008250	Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]; Region: NrdG; COG0602
862908008251	putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE; Region: rSAM_QueE_Ecoli; TIGR04322
862908008252	HMMPfam hit to PF04055, Radical SAM, score 1.7e-07
862908008253	Protein of unknown function (DUF2452); Region: DUF2452; pfam10504
862908008254	Signal peptide predicted for BMS2205 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.993 between residues 18 and 19
862908008255	C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some...; Region: Peptidase_C1; cl00298
862908008256	active site
862908008257	PS00139 Eukaryotic thiol (cysteine) proteases cysteine active site.
862908008258	Signal peptide predicted for BMS2206 by SignalP 2.0 HMM (Signal peptide probability 0.976) with cleavage site probability 0.836 between residues 25 and 26
862908008259	DnaK suppressor protein [Signal transduction mechanisms]; Region: DksA; COG1734
862908008260	HMMPfam hit to PF01258, Zn-finger, prokaryotic DksA/TraR C4 type, score 1.4e-08
862908008261	Signal peptide predicted for BMS2211 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.521 between residues 23 and 24
862908008262	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908008263	Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]; Region: SrmB; COG0513
862908008264	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl17251
862908008265	ATP binding site [chemical binding]; other site
862908008266	putative Mg++ binding site [ion binding]; other site
862908008267	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
862908008268	nucleotide binding region [chemical binding]; other site
862908008269	ATP-binding site [chemical binding]; other site
862908008270	HMMPfam hit to PF00271, Helicase, C-terminal, score 1.6e-26
862908008271	HMMPfam hit to PF00270, DEAD/DEAH box helicase, N-terminal, score 2.3e-41
862908008272	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008273	PS00225 Crystallins beta and gamma 'Greek key' motif signature.
862908008274	Signal peptide predicted for BMS2215 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.992 between residues 22 and 23
862908008275	FHA domain; Region: FHA; pfam00498
862908008276	phosphopeptide binding site; other site
862908008277	HMMPfam hit to PF00498, Forkhead-associated, score 2.6e-08
862908008278	3 probable transmembrane helices predicted for BMS2216 by TMHMM2.0 at aa 230-249, 286-308 and 373-395
862908008279	queuine tRNA-ribosyltransferase; Provisional; Region: tgt; PRK00112
862908008280	Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]; Region: Tgt; COG0343
862908008281	HMMPfam hit to PF01702, Queuine/other tRNA-ribosyltransferase, score 3.8e-130
862908008282	Signal peptide predicted for BMS2218 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.909 between residues 16 and 17
862908008283	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908008284	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cl02429
862908008285	TPR motif; other site
862908008286	binding surface
862908008287	Signal peptide predicted for BMS2220 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 between residues 25 and 26
862908008288	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
862908008289	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
862908008290	catalytic residue [active]
862908008291	Signal peptide predicted for BMS2222 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 18 and 19
862908008292	Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which...; Region: ZnMc; cl00064
862908008293	Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which...; Region: ZnMc; cl00064
862908008294	active site
862908008295	active site
862908008296	Signal peptide predicted for BMS2223 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.596 between residues 27 and 28
862908008297	HMMPfam hit to PF00413, Peptidase M10A and M12B, matrixin and adamalysin, score 8.5e-05
862908008298	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908008299	Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321
862908008300	Xaa-Pro aminopeptidase [Amino acid transport and metabolism]; Region: PepP; COG0006
862908008301	A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity...; Region: APP_MetAP; cl00279
862908008302	active site
862908008303	HMMPfam hit to PF00557, Peptidase M24, score 2.5e-15
862908008304	PS00491 Aminopeptidase P and proline dipeptidase signature.
862908008305	UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]; Region: MurD; COG0771
862908008306	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
862908008307	HMMPfam hit to PF01225, Cytoplasmic peptidoglycan synthetase, N-terminal, score 1.5e-14
862908008308	1 probable transmembrane helix predicted for BMS2225 by TMHMM2.0 at aa 7-29
862908008309	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908008310	S-adenosylmethionine binding site [chemical binding]; other site
862908008311	PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2.
862908008312	PS00626 Regulator of chromosome condensation (RCC1) signature 2.
862908008313	Uncharacterized protein related to glutamine synthetase [General function prediction only]; Region: COG3968
862908008314	Glutamine synthetase type III N terminal; Region: GSIII_N; pfam12437
862908008315	Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120
862908008316	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908008317	HMMPfam hit to PF00120, Glutamine synthetase, catalytic region, score 1.1e-20
862908008318	PS00181 Glutamine synthetase putative ATP-binding region signature.
862908008319	4'-phosphopantetheinyl transferase superfamily; Region: ACPS; cl00500
862908008320	Predicted protease with the C-terminal PDZ domain [General function prediction only]; Region: COG3975
862908008321	M61 glycyl aminopeptidase; Region: Peptidase_M61; pfam05299
862908008322	PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated; Region: PDZ; cl00117
862908008323	protein binding site [polypeptide binding]; other site
862908008324	HMMPfam hit to PF05299, Peptidase M61, score 3.2e-47
862908008325	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908008326	Iron-sulphur cluster biosynthesis; Region: Fe-S_biosyn; cl00400
862908008327	HMMPfam hit to PF01521, HesB/YadR/YfhF, score 2.3e-06
862908008328	Transcriptional regulator [Transcription]; Region: LysR; COG0583
862908008329	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908008330	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
862908008331	dimerization interface [polypeptide binding]; other site
862908008332	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 3.2e-14
862908008333	PS00044 Bacterial regulatory proteins, lysR family signature.
862908008334	HMMPfam hit to PF03466, LysR, substrate-binding, score 1.8e-16
862908008335	PS00496 P-II protein urydylation site.
862908008336	Signal peptide predicted for BMS2233 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.997 between residues 18 and 19
862908008337	Signal peptide predicted for BMS2234 by SignalP 2.0 HMM (Signal peptide probability 0.893) with cleavage site probability 0.535 between residues 19 and 20
862908008338	HMMPfam hit to PF01706, Flagellar motor switch protein FliG, score 2.5e-07
862908008339	ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs; Region: ADP_GME_SDR_e; cd05248
862908008340	ADP-L-glycero-D-manno-heptose-6-epimerase; Region: heptose_epim; TIGR02197
862908008341	NADP binding site [chemical binding]; other site
862908008342	homopentamer interface [polypeptide binding]; other site
862908008343	substrate binding site [chemical binding]; other site
862908008344	active site
862908008345	HMMPfam hit to PF01370, NAD-dependent epimerase/dehydratase, score 7.4e-15
862908008346	Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the...; Region: SO_family_Moco; cl00199
862908008347	metal coordination site [ion binding]; other site
862908008348	Signal peptide predicted for BMS2238 by SignalP 2.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.832 between residues 18 and 19
862908008349	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908008350	dimer interface [polypeptide binding]; other site
862908008351	phosphorylation site [posttranslational modification]
862908008352	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908008353	ATP binding site [chemical binding]; other site
862908008354	G-X-G motif; other site
862908008355	Signal peptide predicted for BMS2239 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.605 between residues 40 and 41
862908008356	2 probable transmembrane helices predicted for BMS2239 by TMHMM2.0 at aa 15-37 and 184-203
862908008357	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 7.7e-10
862908008358	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 2.2e-25
862908008359	Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]; Region: TatC; COG0805
862908008360	6 probable transmembrane helices predicted for BMS2240 by TMHMM2.0 at aa 21-43, 70-87, 108-130, 159-181, 193-212 and 217-239
862908008361	HMMPfam hit to PF00902, Sec-independent periplasmic protein translocase, score 2.2e-55
862908008362	Signal peptide predicted for BMS2240 by SignalP 2.0 HMM (Signal peptide probability 0.648) with cleavage site probability 0.648 between residues 35 and 36
862908008363	Signal peptide predicted for BMS2241 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.985 between residues 29 and 30
862908008364	BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; pfam04324
862908008365	HMMPfam hit to PF04324, BFD-like [2Fe-2S]-binding region, score 9.9e-08
862908008366	Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086
862908008367	active site
862908008368	HMMPfam hit to PF00557, Peptidase M24, score 1e-88
862908008369	PS00680 Methionine aminopeptidase subfamily 1 signature.
862908008370	PS00893 mutT domain signature.
862908008371	Orthopoxvirus protein of unknown function (DUF830); Region: DUF830; cl13998
862908008372	Signal peptide predicted for BMS2244 by SignalP 2.0 HMM (Signal peptide probability 0.813) with cleavage site probability 0.460 between residues 21 and 22
862908008373	Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]; Region: SerA; COG0111
862908008374	Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases; Region: FDH_GDH_like; cl17240
862908008375	NAD binding site [chemical binding]; other site
862908008376	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding, score 4.7e-11
862908008377	Arginase family; Region: Arginase; pfam00491
862908008378	active site
862908008379	metal binding site [ion binding]; metal-binding site
862908008380	HMMPfam hit to PF00491, Arginase/agmatinase/formiminoglutamase, score 1.4e-17
862908008381	PS00147 Arginase family signature 1.
862908008382	PS00148 Arginase family signature 2.
862908008383	leucyl/phenylalanyl-tRNA--protein transferase; Reviewed; Region: aat; PRK00301
862908008384	HMMPfam hit to PF03588, Leucyl/phenylalanyl-tRNA--protein transferase, score 1e-56
862908008385	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
862908008386	transferase 2, rSAM/selenodomain-associated; Region: glyco_like_mftF; TIGR04283
862908008387	active site
862908008388	HMMPfam hit to PF00535, Glycosyl transferase, family 2, score 1.1e-08
862908008389	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
862908008390	4Fe-4S dicluster domain; Region: Fer4_7; pfam12838
862908008391	HMMPfam hit to PF00037, 4Fe-4S ferredoxin, iron-sulfur binding, score 0.00022
862908008392	HMMPfam hit to PF00037, 4Fe-4S ferredoxin, iron-sulfur binding, score 0.00049
862908008393	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
862908008394	Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Region: Complex1_30kDa; pfam00329
862908008395	NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]; Region: NuoD; COG0649
862908008396	NADH dehydrogenase subunit D; Validated; Region: PRK06075; cl17338
862908008397	HMMPfam hit to PF00346, NADH-ubiquinone oxidoreductase, chain 49kDa, score 2.8e-45
862908008398	PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature.
862908008399	HMMPfam hit to PF00329, NADH dehydrogenase (ubiquinone), 30 kDa subunit, score 3.5e-17
862908008400	NADH ubiquinone oxidoreductase, 20 Kd subunit; Region: Oxidored_q6; cl17194
862908008401	HMMPfam hit to PF01058, NADH ubiquinone oxidoreductase, 20 kDa subunit, score 5.3e-16
862908008402	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908008403	Signal peptide predicted for BMS2252 by SignalP 2.0 HMM (Signal peptide probability 0.973) with cleavage site probability 0.316 between residues 20 and 21
862908008404	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908008405	PilZ domain; Region: PilZ; pfam07238
862908008406	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908008407	S-adenosylmethionine binding site [chemical binding]; other site
862908008408	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
862908008409	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
862908008410	dihydrolipoamide dehydrogenase; Validated; Region: PRK06327
862908008411	Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]; Region: GlpB; cl17730
862908008412	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
862908008413	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
862908008414	HMMPfam hit to PF02852, Pyridine nucleotide-disulphide oxidoreductase dimerisation region, score 2.7e-53
862908008415	HMMPfam hit to PF00070, FAD-dependent pyridine nucleotide-disulphide oxidoreductase, score 5e-101
862908008416	PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site.
862908008417	dihydrolipoamide succinyltransferase; Validated; Region: PRK05704
862908008418	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
862908008419	E3 interaction surface; other site
862908008420	lipoyl attachment site [posttranslational modification]; other site
862908008421	e3 binding domain; Region: E3_binding; pfam02817
862908008422	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
862908008423	HMMPfam hit to PF00198, Catalytic domain of components of various dehydrogenase complexes, score 3.1e-135
862908008424	HMMPfam hit to PF02817, E3 binding, score 1.9e-12
862908008425	HMMPfam hit to PF00364, Biotin/lipoyl attachment, score 6.6e-21
862908008426	PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
862908008427	2-oxoglutarate dehydrogenase E1 component; Reviewed; Region: sucA; PRK09404
862908008428	Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of...; Region: TPP_E1_OGDC_like; cd02016
862908008429	TPP-binding site [chemical binding]; other site
862908008430	Transketolase, pyrimidine binding domain; Region: Transket_pyr; pfam02779
862908008431	PYR/PP interface [polypeptide binding]; other site
862908008432	dimer interface [polypeptide binding]; other site
862908008433	TPP binding site [chemical binding]; other site
862908008434	HMMPfam hit to PF02779, Transketolase, central region, score 4.8e-63
862908008435	HMMPfam hit to PF00676, Dehydrogenase, E1 component, score 3e-40
862908008436	Protein of unknown function (DUF539); Region: DUF539; cl01129
862908008437	1 probable transmembrane helix predicted for BMS2259 by TMHMM2.0 at aa 4-26
862908008438	Signal peptide predicted for BMS2259 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.855 between residues 21 and 22
862908008439	Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]; Region: ApbE; COG1477
862908008440	ApbE family; Region: ApbE; pfam02424
862908008441	HMMPfam hit to PF02424, ApbE-like lipoprotein, score 2.2e-78
862908008442	Signal peptide predicted for BMS2260 by SignalP 2.0 HMM (Signal peptide probability 0.912) with cleavage site probability 0.245 between residues 21 and 22
862908008443	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908008444	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908008445	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908008446	ATP binding site [chemical binding]; other site
862908008447	Mg2+ binding site [ion binding]; other site
862908008448	G-X-G motif; other site
862908008449	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 4.8e-11
862908008450	PS00030 Eukaryotic putative RNA-binding region RNP-1 signature.
862908008451	Putative heavy-metal-binding; Region: YbjQ_1; cl00426
862908008452	HMMPfam hit to PF01906, Protein of unknown function DUF74, score 2.9e-10
862908008453	Putative heavy-metal-binding; Region: YbjQ_1; cl00426
862908008454	HMMPfam hit to PF01906, Protein of unknown function DUF74, score 1.2e-53
862908008455	Signal peptide predicted for BMS2264 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.864 between residues 23 and 24
862908008456	Signal peptide predicted for BMS2265 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.945 between residues 18 and 19
862908008457	Domain of unknown function (DUF4105); Region: DUF4105; pfam13387
862908008458	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908008459	1 probable transmembrane helix predicted for BMS2266 by TMHMM2.0 at aa 26-48
862908008460	Signal peptide predicted for BMS2266 by SignalP 2.0 HMM (Signal peptide probability 0.680) with cleavage site probability 0.677 between residues 44 and 45
862908008461	Signal peptide predicted for BMS2267 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.945 between residues 18 and 19
862908008462	Signal peptide predicted for BMS2268 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.820 between residues 23 and 24
862908008463	Na(+)-translocating NADH-quinone reductase subunit F; Provisional; Region: PRK05464
862908008464	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
862908008465	catalytic loop [active]
862908008466	iron binding site [ion binding]; other site
862908008467	Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase; Region: NADH_quinone_reductase; cd06188
862908008468	FAD binding pocket [chemical binding]; other site
862908008469	FAD binding motif [chemical binding]; other site
862908008470	phosphate binding motif [ion binding]; other site
862908008471	beta-alpha-beta structure motif; other site
862908008472	NAD binding pocket [chemical binding]; other site
862908008473	HMMPfam hit to PF00175, Oxidoreductase FAD/NAD(P)-binding, score 3.9e-20
862908008474	HMMPfam hit to PF00970, Oxidoreductase FAD-binding region, score 3.7e-06
862908008475	HMMPfam hit to PF00111, Ferredoxin, score 2.1e-09
862908008476	Signal peptide predicted for BMS2269 by SignalP 2.0 HMM (Signal peptide probability 0.892) with cleavage site probability 0.521 between residues 25 and 26
862908008477	1 probable transmembrane helix predicted for BMS2269 by TMHMM2.0 at aa 5-24
862908008478	Na(+)-translocating NADH-quinone reductase subunit E; Provisional; Region: PRK02830
862908008479	HMMPfam hit to PF02508, RnfA-Nqr electron transport subunit, score 4.8e-101
862908008480	6 probable transmembrane helices predicted for BMS2270 by TMHMM2.0 at aa 13-32, 42-61, 74-96, 111-133, 146-165 and 180-202
862908008481	Na(+)-translocating NADH-quinone reductase subunit D; Validated; Region: PRK09292
862908008482	5 probable transmembrane helices predicted for BMS2271 by TMHMM2.0 at aa 36-58, 65-82, 97-117, 130-152 and 172-194
862908008483	HMMPfam hit to PF02508, RnfA-Nqr electron transport subunit, score 7.5e-82
862908008484	Na(+)-translocating NADH-quinone reductase subunit C; Provisional; Region: PRK05346
862908008485	NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit; Region: nqrC; TIGR01938
862908008486	HMMPfam hit to PF04205, FMN-binding, score 9.5e-15
862908008487	1 probable transmembrane helix predicted for BMS2272 by TMHMM2.0 at aa 9-31
862908008488	Signal peptide predicted for BMS2272 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.734 between residues 27 and 28
862908008489	Na(+)-translocating NADH-quinone reductase subunit B; Provisional; Region: PRK05349
862908008490	HMMPfam hit to PF03116, NQR2 and RnfD, score 1.8e-130
862908008491	8 probable transmembrane helices predicted for BMS2273 by TMHMM2.0 at aa 61-83, 119-141, 153-175, 257-279, 284-306, 316-338, 345-362 and 366-388
862908008492	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908008493	Na(+)-translocating NADH-quinone reductase subunit A; Provisional; Region: PRK05352
862908008494	NQRA C-terminal domain; Region: NQRA_SLBB; pfam11973
862908008495	HMMPfam hit to PF05896, Na-translocating NADH-quinone reductase subunit A, score 1.4e-246
862908008496	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3012
862908008497	SEC-C motif; Region: SEC-C; pfam02810
862908008498	HMMPfam hit to PF02810, SEC-C motif, score 7.1e-10
862908008499	Methyltransferase domain; Region: Methyltransf_12; pfam08242
862908008500	DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_DinF_like; cd13136
862908008501	putative efflux protein, MATE family; Region: matE; TIGR00797
862908008502	10 probable transmembrane helices predicted for BMS2277 by TMHMM2.0 at aa 12-34, 49-71, 96-118, 138-160, 167-185, 195-217, 316-335, 355-377, 390-407 and 411-433
862908008503	HMMPfam hit to PF01554, Multi antimicrobial extrusion protein MatE, score 1e-19
862908008504	Signal peptide predicted for BMS2277 by SignalP 2.0 HMM (Signal peptide probability 0.742) with cleavage site probability 0.528 between residues 30 and 31
862908008505	Invasion gene expression up-regulator, SirB; Region: SirB; cl01184
862908008506	4 probable transmembrane helices predicted for BMS2279 by TMHMM2.0 at aa 10-29, 36-58, 63-85 and 97-114
862908008507	Ion channel; Region: Ion_trans_2; pfam07885
862908008508	2 probable transmembrane helices predicted for BMS2280 by TMHMM2.0 at aa 21-43 and 85-107
862908008509	Signal peptide predicted for BMS2282 by SignalP 2.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.889 between residues 17 and 18
862908008510	Signal peptide predicted for BMS2283 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.738 between residues 19 and 20
862908008511	bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated; Region: PRK08074
862908008512	DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127
862908008513	active site
862908008514	catalytic site [active]
862908008515	substrate binding site [chemical binding]; other site
862908008516	DEAD/DEAH box helicase; Region: DEAD; pfam00270
862908008517	ATP binding site [chemical binding]; other site
862908008518	Helicase C-terminal domain; Region: Helicase_C_2; pfam13307
862908008519	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008520	HMMPfam hit to PF00929, Exonuclease, score 5.1e-11
862908008521	2 probable transmembrane helices predicted for BMS2286 by TMHMM2.0 at aa 45-62 and 82-101
862908008522	BolA-like protein; Region: BolA; pfam01722
862908008523	HMMPfam hit to PF01722, BolA-like protein, score 2.6e-19
862908008524	Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain...; Region: GRX_PICOT_like; cd03028
862908008525	putative GSH binding site [chemical binding]; other site
862908008526	catalytic residues [active]
862908008527	hypothetical protein; Validated; Region: PRK00110
862908008528	HMMPfam hit to PF01709, Protein of unknown function DUF28, score 6.7e-123
862908008529	Response regulator receiver domain; Region: Response_reg; pfam00072
862908008530	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908008531	active site
862908008532	phosphorylation site [posttranslational modification]
862908008533	intermolecular recognition site; other site
862908008534	dimerization interface [polypeptide binding]; other site
862908008535	HMMPfam hit to PF00072, Response regulator receiver, score 1.4e-24
862908008536	1 probable transmembrane helix predicted for BMS2292 by TMHMM2.0 at aa 378-400
862908008537	Signal peptide predicted for BMS2292 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.969 between residues 19 and 20
862908008538	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
862908008539	active site residue [active]
862908008540	PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and...; Region: PLPDE_IV; cd00449
862908008541	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase [Amino acid transport and metabolism / Coenzyme metabolism]; Region: IlvE; COG0115
862908008542	substrate-cofactor binding pocket; other site
862908008543	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908008544	homodimer interface [polypeptide binding]; other site
862908008545	catalytic residue [active]
862908008546	HMMPfam hit to PF01063, Aminotransferase, class IV, score 1.1e-50
862908008547	1 probable transmembrane helix predicted for BMS2295 by TMHMM2.0 at aa 26-45
862908008548	cryptic adenine deaminase; Provisional; Region: PRK10027
862908008549	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
862908008550	Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source...; Region: AdeC; cd01295
862908008551	active site
862908008552	Adenine deaminase C-terminal domain; Region: Adenine_deam_C; pfam13382
862908008553	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008554	HMMPfam hit to PF01979, Amidohydrolase, score 2.4e-38
862908008555	30S ribosomal protein S4; Validated; Region: rpsD; PRK05327
862908008556	Ribosomal protein S4/S9 N-terminal domain; Region: Ribosomal_S4; pfam00163
862908008557	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
862908008558	RNA binding surface [nucleotide binding]; other site
862908008559	HMMPfam hit to PF00163, Ribosomal protein S4, score 1.9e-12
862908008560	HMMPfam hit to PF01479, RNA-binding S4, score 4.3e-16
862908008561	Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes...; Region: LbetaH; cl00160
862908008562	putative trimer interface [polypeptide binding]; other site
862908008563	putative CoA binding site [chemical binding]; other site
862908008564	3 probable transmembrane helices predicted for BMS2300 by TMHMM2.0 at aa 68-90, 103-125 and 155-177
862908008565	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
862908008566	active site
862908008567	nucleotide binding site [chemical binding]; other site
862908008568	HIGH motif; other site
862908008569	KMSKS motif; other site
862908008570	Predicted permeases [General function prediction only]; Region: RarD; COG2962
862908008571	8 probable transmembrane helices predicted for BMS2302 by TMHMM2.0 at aa 5-22, 33-50, 70-89, 94-116, 173-195, 205-227, 234-256 and 266-285
862908008572	HMMPfam hit to PF00892, Protein of unknown function DUF6, score 8.1e-07
862908008573	HMMPfam hit to PF00892, Protein of unknown function DUF6, score 3.9e-06
862908008574	Signal peptide predicted for BMS2304 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.991 between residues 18 and 19
862908008575	M14 family of metallocarboxypeptidases and related proteins; Region: Peptidase_M14_like; cl11393
862908008576	active site
862908008577	Zn binding site [ion binding]; other site
862908008578	PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature.
862908008579	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
862908008580	HMMPfam hit to PF00561, Alpha/beta hydrolase fold, score 1.2e-08
862908008581	Signal peptide predicted for BMS2308 by SignalP 2.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.748 between residues 22 and 23
862908008582	Signal peptide predicted for BMS2310 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.598 between residues 23 and 24
862908008583	1 probable transmembrane helix predicted for BMS2311 by TMHMM2.0 at aa 41-63
862908008584	D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not...; Region: Dtyr_deacylase; cd00563
862908008585	putative active site [active]
862908008586	dimerization interface [polypeptide binding]; other site
862908008587	putative tRNAtyr binding site [nucleotide binding]; other site
862908008588	HMMPfam hit to PF02580, D-tyrosyl-tRNA(Tyr) deacylase, score 3.9e-48
862908008589	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
862908008590	phosphopeptide binding site; other site
862908008591	HMMPfam hit to PF00498, Forkhead-associated, score 3.4e-12
862908008592	FecR protein; Region: FecR; pfam04773
862908008593	Signal peptide predicted for BMS2314 by SignalP 2.0 HMM (Signal peptide probability 0.903) with cleavage site probability 0.873 between residues 19 and 20
862908008594	Signal peptide predicted for BMS2315 by SignalP 2.0 HMM (Signal peptide probability 0.836) with cleavage site probability 0.410 between residues 25 and 26
862908008595	1 probable transmembrane helix predicted for BMS2315 by TMHMM2.0 at aa 7-29
862908008596	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
862908008597	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908008598	Walker A/P-loop; other site
862908008599	ATP binding site [chemical binding]; other site
862908008600	Q-loop/lid; other site
862908008601	ABC transporter signature motif; other site
862908008602	Walker B; other site
862908008603	D-loop; other site
862908008604	H-loop/switch region; other site
862908008605	TOBE domain; Region: TOBE_2; pfam08402
862908008606	HMMPfam hit to PF00005, ABC transporter, score 6.1e-50
862908008607	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008608	YbaK-like.  The YbaK family of deacylase domains includes the INS amino acid-editing domain of  the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze...; Region: YbaK_like; cl00022
862908008609	putative deacylase active site [active]
862908008610	HMMPfam hit to PF04073, YbaK/prolyl-tRNA synthetase associated region, score 1.5e-15
862908008611	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
862908008612	Enoyl-CoA hydratase/isomerase family; Region: ECH; pfam00378
862908008613	substrate binding site [chemical binding]; other site
862908008614	oxyanion hole (OAH) forming residues; other site
862908008615	trimer interface [polypeptide binding]; other site
862908008616	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase, score 3.8e-33
862908008617	V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]; Region: COG3591
862908008618	PS00134 Serine proteases, trypsin family, histidine active site.
862908008619	HMMPfam hit to PF00708, Acylphosphatase, score 0.019
862908008620	Family 1 of Uracil-DNA glycosylase (UDG) enzymes; Region: UDG_F1; cd10027
862908008621	ligand binding site [chemical binding]; other site
862908008622	active site
862908008623	UGI interface [polypeptide binding]; other site
862908008624	catalytic site [active]
862908008625	HMMPfam hit to PF03167, Uracil-DNA glycosylase superfamily, score 2.3e-70
862908008626	PS00130 Uracil-DNA glycosylase signature.
862908008627	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908008628	ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131
862908008629	Walker A/P-loop; other site
862908008630	ATP binding site [chemical binding]; other site
862908008631	Q-loop/lid; other site
862908008632	ABC transporter signature motif; other site
862908008633	Walker B; other site
862908008634	D-loop; other site
862908008635	H-loop/switch region; other site
862908008636	HMMPfam hit to PF00005, ABC transporter, score 1.2e-41
862908008637	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008638	ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: COG4587
862908008639	ABC-2 family transporter protein; Region: ABC2_membrane_6; cl01496
862908008640	7 probable transmembrane helices predicted for BMS2323 by TMHMM2.0 at aa 29-48, 69-91, 117-139, 144-166, 181-198, 203-225 and 235-257
862908008641	HMMPfam hit to PF06182, Protein of unknown function DUF990, score 1.5e-06
862908008642	ABC-2 family transporter protein; Region: ABC2_membrane_6; cl01496
862908008643	HMMPfam hit to PF06182, Protein of unknown function DUF990, score 1e-15
862908008644	5 probable transmembrane helices predicted for BMS2324 by TMHMM2.0 at aa 34-56, 81-103, 113-135, 172-191 and 195-217
862908008645	YbaK-like.  The YbaK family of deacylase domains includes the INS amino acid-editing domain of  the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze...; Region: YbaK_like; cd04332
862908008646	putative deacylase active site [active]
862908008647	HMMPfam hit to PF04073, YbaK/prolyl-tRNA synthetase associated region, score 9.5e-06
862908008648	ABC transporter C family member; Provisional; Region: PLN03232
862908008649	tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021
862908008650	Eukaryotic and bacterial pseudouridine synthases similar to E.  coli TruA; Region: PseudoU_synth_EcTruA; cd02570
862908008651	active site
862908008652	dimerization interface 3.5A [polypeptide binding]; other site
862908008653	HMMPfam hit to PF01416, tRNA pseudouridine synthase, score 4.9e-09
862908008654	Methyltransferase domain; Region: Methyltransf_31; pfam13847
862908008655	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908008656	S-adenosylmethionine binding site [chemical binding]; other site
862908008657	phosphodiesterase; Provisional; Region: PRK12704
862908008658	Domain of unknown function (DUF4105); Region: DUF4105; pfam13387
862908008659	Signal peptide predicted for BMS2330 by SignalP 2.0 HMM (Signal peptide probability 0.879) with cleavage site probability 0.633 between residues 22 and 23
862908008660	Protein of unknown function (DUF3015); Region: DUF3015; pfam11220
862908008661	Signal peptide predicted for BMS2331 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 18 and 19
862908008662	Putative GTPases (G3E family) [General function prediction only]; Region: COG0523
862908008663	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
862908008664	Cobalamin synthesis protein cobW C-terminal domain; Region: CobW_C; pfam07683
862908008665	This hit extended beyond the end of the feature by 1 aa and was clipped.; PS00294 Prenyl group binding site (CAAX box).
862908008666	HMMPfam hit to PF07683, , score 4.2e-26
862908008667	HMMPfam hit to PF02492, Cobalamin synthesis protein/P47K, score 1.1e-63
862908008668	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008669	Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153
862908008670	metal binding site 2 [ion binding]; metal-binding site
862908008671	putative DNA binding helix; other site
862908008672	metal binding site 1 [ion binding]; metal-binding site
862908008673	dimer interface [polypeptide binding]; other site
862908008674	structural Zn2+ binding site [ion binding]; other site
862908008675	HMMPfam hit to PF01475, Ferric-uptake regulator, score 9.5e-25
862908008676	MerC mercury resistance protein; Region: MerC; pfam03203
862908008677	4 probable transmembrane helices predicted for BMS2334 by TMHMM2.0 at aa 30-52, 62-81, 93-112 and 127-145
862908008678	methionine sulfoxide reductase A; Provisional; Region: PRK14054
862908008679	HMMPfam hit to PF01625, Peptide methionine sulfoxide reductase, score 5.2e-82
862908008680	Signal peptide predicted for BMS2335 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.776 between residues 28 and 29
862908008681	Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011
862908008682	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
862908008683	Signal peptide predicted for BMS2337 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 between residues 18 and 19
862908008684	Alpha/beta hydrolase family; Region: Abhydrolase_5; pfam12695
862908008685	Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: LeuS; COG0495
862908008686	catalytic core domain of leucyl-tRNA synthetases; Region: LeuRS_core; cd00812
862908008687	HIGH motif; other site
862908008688	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
862908008689	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
862908008690	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
862908008691	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
862908008692	active site
862908008693	KMSKS motif; other site
862908008694	Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases; Region: Anticodon_Ia_Leu_BEm; cd07958
862908008695	tRNA binding surface [nucleotide binding]; other site
862908008696	Anticodon-binding domain of tRNA; Region: Anticodon_1; pfam08264
862908008697	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
862908008698	PS00338 Somatotropin, prolactin and related hormones signature 2.
862908008699	HMMPfam hit to PF00133, Aminoacyl-tRNA synthetase, class Ia, score 6.9e-100
862908008700	PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
862908008701	1 probable transmembrane helix predicted for BMS2340 by TMHMM2.0 at aa 20-42
862908008702	Signal peptide predicted for BMS2340 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.878 between residues 34 and 35
862908008703	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
862908008704	active site
862908008705	PS00134 Serine proteases, trypsin family, histidine active site.
862908008706	Signal peptide predicted for BMS2341 by SignalP 2.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.314 between residues 22 and 23
862908008707	PilZ domain; Region: PilZ; pfam07238
862908008708	Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]; Region: DAP2; COG1506
862908008709	Prolyl oligopeptidase family; Region: Peptidase_S9; pfam00326
862908008710	HMMPfam hit to PF00326, Peptidase S9, prolyl oligopeptidase active site region, score 8.7e-41
862908008711	Signal peptide predicted for BMS2343 by SignalP 2.0 HMM (Signal peptide probability 0.972) with cleavage site probability 0.521 between residues 24 and 25
862908008712	This hit extended beyond the end of the feature by 1 aa and was clipped.; PS00294 Prenyl group binding site (CAAX box).
862908008713	Uncharacterized protein conserved in bacteria (DUF2248); Region: DUF2248; pfam10005
862908008714	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908008715	D-alanine--D-alanine ligase; Region: D_ala_D_alaTIGR; TIGR01205
862908008716	D-ala D-ala ligase N-terminus; Region: Dala_Dala_lig_N; pfam01820
862908008717	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908008718	HMMPfam hit to PF07478, D-alanine--D-alanine ligase, C-terminal, score 9.4e-13
862908008719	FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784
862908008720	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908008721	active site
862908008722	phosphorylation site [posttranslational modification]
862908008723	intermolecular recognition site; other site
862908008724	dimerization interface [polypeptide binding]; other site
862908008725	HMMPfam hit to PF00072, Response regulator receiver, score 6.8e-30
862908008726	START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily; Region: SRPBCC; cl14643
862908008727	hydrophobic ligand binding site; other site
862908008728	Signal peptide predicted for BMS2348 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.657 between residues 24 and 25
862908008729	Putative ParB-like nuclease; Region: ParBc_2; cl17538
862908008730	Signal peptide predicted for BMS2349 by SignalP 2.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.762 between residues 36 and 37
862908008731	1 probable transmembrane helix predicted for BMS2349 by TMHMM2.0 at aa 13-35
862908008732	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
862908008733	active site
862908008734	HMMPfam hit to PF01026, TatD-related deoxyribonuclease, score 1.1e-16
862908008735	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008736	Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]; Region: COG1179
862908008737	Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like...; Region: YgdL_like; cd00755
862908008738	putative ATP binding site [chemical binding]; other site
862908008739	putative substrate interface [chemical binding]; other site
862908008740	HMMPfam hit to PF00899, UBA/THIF-type NAD/FAD binding fold, score 5.2e-37
862908008741	Predicted Fe-S-cluster redox enzyme [General function prediction only]; Region: COG0820
862908008742	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908008743	FeS/SAM binding site; other site
862908008744	HMMPfam hit to PF04055, Radical SAM, score 1.8e-09
862908008745	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
862908008746	active site
862908008747	HMMPfam hit to PF00089, Peptidase S1, chymotrypsin, score 1.9e-05
862908008748	PS00134 Serine proteases, trypsin family, histidine active site.
862908008749	PS00673 Serine proteases, V8 family, serine active site.
862908008750	2 probable transmembrane helices predicted for BMS2355 by TMHMM2.0 at aa 58-75 and 85-107
862908008751	Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]; Region: COG0826
862908008752	Peptidase family U32; Region: Peptidase_U32; pfam01136
862908008753	Collagenase; Region: DUF3656; pfam12392
862908008754	Peptidase family U32; Region: Peptidase_U32; cl03113
862908008755	HMMPfam hit to PF01136, Peptidase U32, score 1.6e-87
862908008756	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008757	X-Pro dipeptidyl-peptidase (S15 family); Region: Peptidase_S15; pfam02129
862908008758	HMMPfam hit to PF02129, Peptidase S15, score 3.5e-07
862908008759	Signal peptide predicted for BMS2358 by SignalP 2.0 HMM (Signal peptide probability 0.961) with cleavage site probability 0.614 between residues 19 and 20
862908008760	Signal peptide predicted for BMS2359 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.832 between residues 20 and 21
862908008761	Domain of unknown function (DUF4402); Region: DUF4402; pfam14352
862908008762	Signal peptide predicted for BMS2360 by SignalP 2.0 HMM (Signal peptide probability 0.791) with cleavage site probability 0.772 between residues 16 and 17
862908008763	Signal peptide predicted for BMS2361 by SignalP 2.0 HMM (Signal peptide probability 0.948) with cleavage site probability 0.940 between residues 16 and 17
862908008764	Signal peptide predicted for BMS2362 by SignalP 2.0 HMM (Signal peptide probability 0.979) with cleavage site probability 0.630 between residues 24 and 25
862908008765	Domain of unknown function (DUF4402); Region: DUF4402; pfam14352
862908008766	Signal peptide predicted for BMS2363 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.415 between residues 40 and 41
862908008767	FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784
862908008768	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908008769	active site
862908008770	phosphorylation site [posttranslational modification]
862908008771	intermolecular recognition site; other site
862908008772	dimerization interface [polypeptide binding]; other site
862908008773	HMMPfam hit to PF00072, Response regulator receiver, score 1.6e-05
862908008774	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908008775	Nitroreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and...; Region: Nitroreductase_1; cd02137
862908008776	dimer interface [polypeptide binding]; other site
862908008777	FMN binding site [chemical binding]; other site
862908008778	Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer,  utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are...; Region: Nitro_FMN_reductase; cl00514
862908008779	dimer interface [polypeptide binding]; other site
862908008780	HMMPfam hit to PF00881, Nitroreductase, score 1.9e-30
862908008781	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
862908008782	putative substrate translocation pore; other site
862908008783	Major Facilitator Superfamily; Region: MFS_1; pfam07690
862908008784	Signal peptide predicted for BMS2370 by SignalP 2.0 HMM (Signal peptide probability 0.959) with cleavage site probability 0.742 between residues 22 and 23
862908008785	HMMPfam hit to PF07690, , score 7.5e-19
862908008786	10 probable transmembrane helices predicted for BMS2370 by TMHMM2.0 at aa 41-60, 73-95, 99-121, 133-155, 165-182, 203-225, 240-259, 279-301, 321-342 and 349-371
862908008787	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
862908008788	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
862908008789	active site
862908008790	metal binding site [ion binding]; metal-binding site
862908008791	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
862908008792	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
862908008793	HMMPfam hit to PF00149, Metallophosphoesterase, score 4.9e-13
862908008794	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
862908008795	Signal peptide predicted for BMS2372 by SignalP 2.0 HMM (Signal peptide probability 0.870) with cleavage site probability 0.264 between residues 23 and 24
862908008796	Endonuclease I; Region: Endonuclease_1; cl01003
862908008797	Signal peptide predicted for BMS2373 by SignalP 2.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.988 between residues 41 and 42
862908008798	HMMPfam hit to PF04231, Endonuclease I, score 3.3e-14
862908008799	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
862908008800	The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold; Region: PBP2_DppA_like; cd08493
862908008801	peptide binding site [polypeptide binding]; other site
862908008802	Signal peptide predicted for BMS2374 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.639 between residues 19 and 20
862908008803	HMMPfam hit to PF00496, Bacterial extracellular solute-binding protein, family 5, score 1.5e-94
862908008804	PS01040 Bacterial extracellular solute-binding proteins, family 5 signature.
862908008805	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
862908008806	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
862908008807	dimer interface [polypeptide binding]; other site
862908008808	conserved gate region; other site
862908008809	putative PBP binding loops; other site
862908008810	ABC-ATPase subunit interface; other site
862908008811	7 probable transmembrane helices predicted for BMS2375 by TMHMM2.0 at aa 10-32, 99-121, 136-158, 165-184, 199-221, 260-282 and 311-333
862908008812	HMMPfam hit to PF00528, Binding-protein-dependent transport systems inner membrane component, score 3.1e-52
862908008813	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
862908008814	dipeptide transporter; Provisional; Region: PRK10913
862908008815	N-terminal TM domain of oligopeptide transport permease C; Region: OppC_N; pfam12911
862908008816	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
862908008817	dimer interface [polypeptide binding]; other site
862908008818	conserved gate region; other site
862908008819	putative PBP binding loops; other site
862908008820	ABC-ATPase subunit interface; other site
862908008821	6 probable transmembrane helices predicted for BMS2376 by TMHMM2.0 at aa 25-47, 94-116, 128-150, 155-174, 195-217 and 259-281
862908008822	HMMPfam hit to PF00528, Binding-protein-dependent transport systems inner membrane component, score 1.3e-51
862908008823	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppD; COG0444
862908008824	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
862908008825	Walker A/P-loop; other site
862908008826	ATP binding site [chemical binding]; other site
862908008827	Q-loop/lid; other site
862908008828	ABC transporter signature motif; other site
862908008829	Walker B; other site
862908008830	D-loop; other site
862908008831	H-loop/switch region; other site
862908008832	Oligopeptide/dipeptide transporter, C-terminal region; Region: oligo_HPY; cl07097
862908008833	HMMPfam hit to PF00005, ABC transporter, score 3.7e-55
862908008834	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008835	PS00211 ABC transporters family signature.
862908008836	dipeptide transporter ATP-binding subunit; Provisional; Region: dppF; PRK11308
862908008837	ATP-binding cassette domain of nickel/oligopeptides specific transporters; Region: ABC_NikE_OppD_transporters; cd03257
862908008838	Walker A/P-loop; other site
862908008839	ATP binding site [chemical binding]; other site
862908008840	Q-loop/lid; other site
862908008841	ABC transporter signature motif; other site
862908008842	Walker B; other site
862908008843	D-loop; other site
862908008844	H-loop/switch region; other site
862908008845	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Region: oligo_HPY; TIGR01727
862908008846	HMMPfam hit to PF00005, ABC transporter, score 1.6e-60
862908008847	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008848	PS00211 ABC transporters family signature.
862908008849	Signal peptide predicted for BMS2379 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.988 between residues 56 and 57
862908008850	1 probable transmembrane helix predicted for BMS2379 by TMHMM2.0 at aa 40-57
862908008851	c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]; Region: COG2206
862908008852	Gamma-glutamyltransferase [Amino acid transport and metabolism]; Region: Ggt; COG0405
862908008853	Gamma-glutamyltranspeptidase; Region: G_glu_transpept; pfam01019
862908008854	HMMPfam hit to PF01019, Gamma-glutamyltranspeptidase, score 1.7e-193
862908008855	Signal peptide predicted for BMS2383 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.787 between residues 20 and 21
862908008856	PBP superfamily domain; Region: PBP_like_2; cl17296
862908008857	Signal peptide predicted for BMS2384 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 19 and 20
862908008858	HMMPfam hit to PF01547, Bacterial extracellular solute-binding protein, family 1, score 1.6e-16
862908008859	ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]; Region: PstC; COG0573
862908008860	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
862908008861	dimer interface [polypeptide binding]; other site
862908008862	conserved gate region; other site
862908008863	putative PBP binding loops; other site
862908008864	ABC-ATPase subunit interface; other site
862908008865	6 probable transmembrane helices predicted for BMS2385 by TMHMM2.0 at aa 48-70, 90-121, 133-155, 175-197, 266-288 and 303-325
862908008866	HMMPfam hit to PF00528, Binding-protein-dependent transport systems inner membrane component, score 1e-13
862908008867	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
862908008868	ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]; Region: PstA; COG0581
862908008869	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
862908008870	dimer interface [polypeptide binding]; other site
862908008871	conserved gate region; other site
862908008872	putative PBP binding loops; other site
862908008873	ABC-ATPase subunit interface; other site
862908008874	Signal peptide predicted for BMS2386 by SignalP 2.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.710 between residues 38 and 39
862908008875	6 probable transmembrane helices predicted for BMS2386 by TMHMM2.0 at aa 12-34, 71-93, 106-128, 133-152, 180-202 and 251-273
862908008876	HMMPfam hit to PF00528, Binding-protein-dependent transport systems inner membrane component, score 6.5e-26
862908008877	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
862908008878	ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: PstB; COG1117
862908008879	ATP-binding cassette domain of the phosphate transport system; Region: ABC_PstB_phosphate_transporter; cd03260
862908008880	Walker A/P-loop; other site
862908008881	ATP binding site [chemical binding]; other site
862908008882	Q-loop/lid; other site
862908008883	ABC transporter signature motif; other site
862908008884	Walker B; other site
862908008885	D-loop; other site
862908008886	H-loop/switch region; other site
862908008887	HMMPfam hit to PF00005, ABC transporter, score 1.5e-59
862908008888	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008889	PS00211 ABC transporters family signature.
862908008890	phosphate transport system regulatory protein PhoU; Region: phoU_full; TIGR02135
862908008891	PhoU domain; Region: PhoU; pfam01895
862908008892	PhoU domain; Region: PhoU; pfam01895
862908008893	HMMPfam hit to PF01895, PhoU, score 2.8e-18
862908008894	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
862908008895	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908008896	active site
862908008897	phosphorylation site [posttranslational modification]
862908008898	intermolecular recognition site; other site
862908008899	dimerization interface [polypeptide binding]; other site
862908008900	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
862908008901	DNA binding site [nucleotide binding]
862908008902	HMMPfam hit to PF00072, Response regulator receiver, score 9.2e-28
862908008903	HMMPfam hit to PF00486, Transcriptional regulatory protein, C-terminal, score 1.1e-18
862908008904	phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966
862908008905	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908008906	dimer interface [polypeptide binding]; other site
862908008907	phosphorylation site [posttranslational modification]
862908008908	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908008909	ATP binding site [chemical binding]; other site
862908008910	Mg2+ binding site [ion binding]; other site
862908008911	G-X-G motif; other site
862908008912	2 probable transmembrane helices predicted for BMS2390 by TMHMM2.0 at aa 34-56 and 188-210
862908008913	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 4e-17
862908008914	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 3.7e-36
862908008915	Signal peptide predicted for BMS2391 by SignalP 2.0 HMM (Signal peptide probability 0.972) with cleavage site probability 0.963 between residues 18 and 19
862908008916	Signal peptide predicted for BMS2392 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 between residues 22 and 23
862908008917	RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal...; Region: RaiA; cl00250
862908008918	30S subunit binding site; other site
862908008919	Biopolymer transport proteins [Intracellular trafficking and secretion]; Region: TolQ; COG0811
862908008920	3 probable transmembrane helices predicted for BMS2394 by TMHMM2.0 at aa 13-35, 90-112 and 127-149
862908008921	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel, score 9.8e-26
862908008922	Biopolymer transport protein [Intracellular trafficking and secretion]; Region: ExbD; COG0848
862908008923	Biopolymer transport protein ExbD/TolR; Region: ExbD; pfam02472
862908008924	HMMPfam hit to PF02472, Biopolymer transport protein ExbD/TolR, score 4.3e-16
862908008925	1 probable transmembrane helix predicted for BMS2395 by TMHMM2.0 at aa 13-32
862908008926	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
862908008927	This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the...; Region: GT1_mtfB_like; cd03809
862908008928	HMMPfam hit to PF00534, Glycosyl transferase, group 1, score 7e-24
862908008929	PS00284 Serpins signature.
862908008930	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
862908008931	N-acetyl-D-glucosamine binding site [chemical binding]; other site
862908008932	catalytic residue [active]
862908008933	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
862908008934	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
862908008935	HMMPfam hit to PF01476, Peptidoglycan-binding LysM, score 5e-13
862908008936	HMMPfam hit to PF01476, Peptidoglycan-binding LysM, score 2.7e-16
862908008937	HMMPfam hit to PF01464, SLT, score 8.5e-18
862908008938	Signal peptide predicted for BMS2397 by SignalP 2.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.941 between residues 24 and 25
862908008939	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908008940	Signal peptide predicted for BMS2398 by SignalP 2.0 HMM (Signal peptide probability 0.968) with cleavage site probability 0.536 between residues 27 and 28
862908008941	Putative MetA-pathway of phenol degradation; Region: Phenol_MetA_deg; cl01768
862908008942	Signal peptide predicted for BMS2399 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.857 between residues 23 and 24
862908008943	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008944	PS00881 Protein splicing signature.
862908008945	L-Ala-D/L-Glu epimerase; Provisional; Region: PRK15129
862908008946	L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of...; Region: L-Ala-DL-Glu_epimerase; cd03319
862908008947	active site
862908008948	DnaJ domain; Region: DnaJ; pfam00226
862908008949	1 probable transmembrane helix predicted for BMS2401 by TMHMM2.0 at aa 32-54
862908008950	HMMPfam hit to PF00226, Heat shock protein DnaJ, N-terminal, score 0.013
862908008951	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
862908008952	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
862908008953	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
862908008954	putative active site [active]
862908008955	HMMPfam hit to PF01075, Glycosyl transferase, family 9, score 5.3e-08
862908008956	PS00216 Sugar transport proteins signature 1.
862908008957	C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some...; Region: Peptidase_C1; cd02619
862908008958	active site
862908008959	Signal peptide predicted for BMS2404 by SignalP 2.0 HMM (Signal peptide probability 0.980) with cleavage site probability 0.433 between residues 18 and 19
862908008960	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908008961	HMMPfam hit to PF00112, Peptidase C1A, papain, score 8.2e-07
862908008962	Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilT; COG2805
862908008963	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
862908008964	Walker A motif; other site
862908008965	ATP binding site [chemical binding]; other site
862908008966	Walker B motif; other site
862908008967	HMMPfam hit to PF00437, Bacterial type II secretion system protein E, score 6.1e-18
862908008968	PS00017 ATP/GTP-binding site motif A (P-loop).
862908008969	PS00662 Bacterial type II secretion system protein E signature.
862908008970	RDD family; Region: RDD; pfam06271
862908008971	HMMPfam hit to PF06271, RDD, score 3.3e-16
862908008972	3 probable transmembrane helices predicted for BMS2406 by TMHMM2.0 at aa 80-102, 122-144 and 173-195
862908008973	carboxy-terminal protease; Provisional; Region: PRK11186
862908008974	PDZ domain (Also known as DHR or GLGF); Region: PDZ; pfam00595
862908008975	protein binding site [polypeptide binding]; other site
862908008976	C-terminal processing peptidase; serine protease family S41; Region: Peptidase_S41_CPP; cd07560
862908008977	Catalytic dyad [active]
862908008978	C-terminal domain of tail specific protease (DUF3340); Region: DUF3340; pfam11818
862908008979	HMMPfam hit to PF03572, Peptidase S41, score 3.2e-60
862908008980	HMMPfam hit to PF00595, PDZ/DHR/GLGF, score 2e-14
862908008981	Signal peptide predicted for BMS2408 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 between residues 21 and 22
862908008982	thiamine biosynthesis protein ThiI; Provisional; Region: PRK01565
862908008983	THUMP domain of thiamine biosynthesis protein ThiI; Region: THUMP_ThiI; cd11716
862908008984	ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide; Region: ThiI; cd01712
862908008985	Ligand Binding Site [chemical binding]; other site
862908008986	HMMPfam hit to PF02568, Thiamine biosynthesis protein, score 1.5e-72
862908008987	HMMPfam hit to PF02926, THUMP, score 3.6e-16
862908008988	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
862908008989	cysteine desulfurase NifS; Region: FeS_nifS; TIGR03402
862908008990	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
862908008991	catalytic residue [active]
862908008992	HMMPfam hit to PF00266, Aminotransferase, class V, score 4.1e-37
862908008993	Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]; Region: COG4946
862908008994	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
862908008995	Periplasmic protease [Cell envelope biogenesis, outer membrane]; Region: Prc; COG0793
862908008996	C-terminal processing peptidase family S41; Region: Peptidase_S41; cl02526
862908008997	Tricorn protease; serine protease family S41; Region: Peptidase_S41_TRI; cd07562
862908008998	Domain interface; other site
862908008999	Peptide binding site; other site
862908009000	Active site tetrad [active]
862908009001	HMMPfam hit to PF03572, Peptidase S41, score 6.9e-27
862908009002	Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones]; Region: COG4067
862908009003	HMMPfam hit to PF05618, Protein of unknown function DUF785, score 7.5e-35
862908009004	ribosomal protein S6 modification protein; Provisional; Region: PRK10446
862908009005	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908009006	TrkA-C domain; Region: TrkA_C; pfam02080
862908009007	HMMPfam hit to PF02080, TrkA-C, score 4.1e-08
862908009008	Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup; Region: M14_ASTE_ASPA_like_1; cd06251
862908009009	Succinylglutamate desuccinylase / Aspartoacylase family; Region: AstE_AspA; pfam04952
862908009010	putative active site [active]
862908009011	Zn binding site [ion binding]; other site
862908009012	HMMPfam hit to PF04952, Succinylglutamate desuccinylase/aspartoacylase, score 4.2e-70
862908009013	Domain of unknown function (DUF4105); Region: DUF4105; pfam13387
862908009014	Signal peptide predicted for BMS2415 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.952 between residues 19 and 20
862908009015	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908009016	Signal peptide predicted for BMS2416 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.996 between residues 20 and 21
862908009017	Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]; Region: QRI7; COG0533
862908009018	Signal peptide predicted for BMS2417 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.974 between residues 18 and 19
862908009019	DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]; Region: Dps; COG0783
862908009020	DPS protein, ferritin-like diiron-binding domain; Region: DPS; cd01043
862908009021	dimerization interface [polypeptide binding]; other site
862908009022	DPS ferroxidase diiron center [ion binding]; other site
862908009023	ion pore; other site
862908009024	HMMPfam hit to PF00210, Ferritin and Dps, score 1.2e-26
862908009025	PS00818 Dps protein family signature 1.
862908009026	PS00819 Dps protein family signature 2.
862908009027	2 probable transmembrane helices predicted for BMS2419 by TMHMM2.0 at aa 5-27 and 47-69
862908009028	Signal peptide predicted for BMS2419 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.526 between residues 23 and 24
862908009029	The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide...; Region: Delta9-FADS-like; cd03505
862908009030	Fatty acid desaturase; Region: FA_desaturase; pfam00487
862908009031	Di-iron ligands [ion binding]; other site
862908009032	The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide...; Region: Delta9-FADS-like; cd03505
862908009033	HMMPfam hit to PF00487, Fatty acid desaturase, score 2.1e-56
862908009034	2 probable transmembrane helices predicted for BMS2421 by TMHMM2.0 at aa 4-26 and 119-141
862908009035	Signal peptide predicted for BMS2421 by SignalP 2.0 HMM (Signal peptide probability 0.838) with cleavage site probability 0.456 between residues 20 and 21
862908009036	aconitate hydratase; Validated; Region: PRK09277
862908009037	Aconitase A catalytic domain; Region: AcnA_IRP; cd01586
862908009038	substrate binding site [chemical binding]; other site
862908009039	ligand binding site [chemical binding]; other site
862908009040	Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group...; Region: AcnA_IRP_Swivel; cd01580
862908009041	substrate binding site [chemical binding]; other site
862908009042	HMMPfam hit to PF00694, Aconitate hydratase, C-terminal, score 4.1e-59
862908009043	HMMPfam hit to PF00330, Aconitate hydratase, N-terminal, score 1.2e-250
862908009044	PS01244 Aconitase family signature 2.
862908009045	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908009046	PS00450 Aconitase family signature 1.
862908009047	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908009048	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
862908009049	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908009050	active site
862908009051	phosphorylation site [posttranslational modification]
862908009052	intermolecular recognition site; other site
862908009053	dimerization interface [polypeptide binding]; other site
862908009054	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
862908009055	DNA binding site [nucleotide binding]
862908009056	HMMPfam hit to PF00486, Transcriptional regulatory protein, C-terminal, score 1.4e-10
862908009057	HMMPfam hit to PF00072, Response regulator receiver, score 1.6e-06
862908009058	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 0.0068
862908009059	Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226
862908009060	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908009061	S-adenosylmethionine binding site [chemical binding]; other site
862908009062	Methyltransferase domain; Region: Methyltransf_23; pfam13489
862908009063	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908009064	S-adenosylmethionine binding site [chemical binding]; other site
862908009065	Protein of unknown function (DUF454); Region: DUF454; cl01063
862908009066	Signal peptide predicted for BMS2427 by SignalP 2.0 HMM (Signal peptide probability 0.799) with cleavage site probability 0.661 between residues 44 and 45
862908009067	3 probable transmembrane helices predicted for BMS2427 by TMHMM2.0 at aa 10-32, 79-96 and 100-119
862908009068	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
862908009069	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908009070	S-adenosylmethionine binding site [chemical binding]; other site
862908009071	Acetyltransferase (GNAT) domain; Region: Acetyltransf_6; cl17497
862908009072	Protein of unknown function, DUF482; Region: DUF482; pfam04339
862908009073	HMMPfam hit to PF04339, Protein of unknown function DUF482, score 1.3e-96
862908009074	Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins; Region: GAT1_Peptidase_E_like; cd03129
862908009075	catalytic triad [active]
862908009076	active site nucleophile [active]
862908009077	HMMPfam hit to PF03575, Peptidase S51, dipeptidase E, score 8.5e-09
862908009078	serine/threonine protein kinase; Provisional; Region: PRK11768
862908009079	Putative homoserine kinase type II (protein kinase fold) [General function prediction only]; Region: COG2334
862908009080	HMMPfam hit to PF01636, Aminoglycoside phosphotransferase, score 4.1e-18
862908009081	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
862908009082	Coenzyme A binding pocket [chemical binding]; other site
862908009083	HMMPfam hit to PF00583, GCN5-related N-acetyltransferase, score 3.2e-12
862908009084	peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional; Region: PRK10903
862908009085	cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the...; Region: cyclophilin; cl00197
862908009086	active site
862908009087	HMMPfam hit to PF00160, Peptidyl-prolyl cis-trans isomerase, cyclophilin type, score 4.6e-43
862908009088	PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
862908009089	Signal peptide predicted for BMS2435 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.992 between residues 19 and 20
862908009090	DSBA-like thioredoxin domain; Region: DSBA; pfam01323
862908009091	DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1; Region: DsbA_HCCA_Iso; cd03022
862908009092	putative catalytic residue [active]
862908009093	HMMPfam hit to PF01323, DSBA oxidoreductase, score 1.4e-18
862908009094	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
862908009095	Zn2+ binding site [ion binding]; other site
862908009096	Mg2+ binding site [ion binding]; other site
862908009097	HMMPfam hit to PF01966, Metal-dependent phosphohydrolase, HD subdomain, score 6.4e-05
862908009098	ATP-dependent helicase HepA; Validated; Region: PRK04914
862908009099	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
862908009100	ATP binding site [chemical binding]; other site
862908009101	putative Mg++ binding site [ion binding]; other site
862908009102	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
862908009103	nucleotide binding region [chemical binding]; other site
862908009104	ATP-binding site [chemical binding]; other site
862908009105	HMMPfam hit to PF00271, Helicase, C-terminal, score 6.9e-14
862908009106	HMMPfam hit to PF00176, SNF2-related, score 4e-11
862908009107	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 1.5e-06
862908009108	1 probable transmembrane helix predicted for BMS2440 by TMHMM2.0 at aa 34-53
862908009109	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009110	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
862908009111	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
862908009112	Magnesium ion binding site [ion binding]; other site
862908009113	HMMPfam hit to PF01656, Cobyrinic acid a,c-diamide synthase, score 2.1e-18
862908009114	1 probable transmembrane helix predicted for BMS2443 by TMHMM2.0 at aa 5-27
862908009115	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl17182
862908009116	HMMPfam hit to PF00583, GCN5-related N-acetyltransferase, score 0.0023
862908009117	Signal peptide predicted for BMS2445 by SignalP 2.0 HMM (Signal peptide probability 0.916) with cleavage site probability 0.599 between residues 48 and 49
862908009118	1 probable transmembrane helix predicted for BMS2445 by TMHMM2.0 at aa 15-37
862908009119	Response regulator receiver domain; Region: Response_reg; pfam00072
862908009120	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908009121	active site
862908009122	phosphorylation site [posttranslational modification]
862908009123	intermolecular recognition site; other site
862908009124	dimerization interface [polypeptide binding]; other site
862908009125	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908009126	His Kinase A (phospho-acceptor) domain; Region: HisKA; pfam00512
862908009127	phosphorylation site [posttranslational modification]
862908009128	dimer interface [polypeptide binding]; other site
862908009129	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 0.0086
862908009130	HMMPfam hit to PF00072, Response regulator receiver, score 1.2e-31
862908009131	seryl-tRNA synthetase; Provisional; Region: PRK05431
862908009132	Seryl-tRNA synthetase N-terminal domain; Region: Seryl_tRNA_N; pfam02403
862908009133	Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme...; Region: SerRS_core; cd00770
862908009134	dimer interface [polypeptide binding]; other site
862908009135	active site
862908009136	motif 1; other site
862908009137	motif 2; other site
862908009138	motif 3; other site
862908009139	HMMPfam hit to PF00587, tRNA synthetases, class-II (G, H, P and S), score 1.4e-45
862908009140	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
862908009141	HMMPfam hit to PF02403, Seryl-tRNA synthetase, class IIa, score 8.2e-24
862908009142	Response regulator receiver domain; Region: Response_reg; pfam00072
862908009143	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908009144	active site
862908009145	phosphorylation site [posttranslational modification]
862908009146	intermolecular recognition site; other site
862908009147	dimerization interface [polypeptide binding]; other site
862908009148	HMMPfam hit to PF00072, Response regulator receiver, score 5.2e-12
862908009149	Predicted permease, member of the PurR regulon [General function prediction only]; Region: yhhT; cl00465
862908009150	Domain of unknown function DUF20; Region: UPF0118; pfam01594
862908009151	HMMPfam hit to PF01594, Protein of unknown function UPF0118, score 4.2e-34
862908009152	8 probable transmembrane helices predicted for BMS2451 by TMHMM2.0 at aa 7-26, 30-49, 61-83, 141-163, 184-206, 211-233, 240-262 and 282-304
862908009153	Signal peptide predicted for BMS2453 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.853 between residues 31 and 32
862908009154	prolipoprotein diacylglyceryl transferase; Reviewed; Region: PRK00052
862908009155	HMMPfam hit to PF01790, Prolipoprotein diacylglyceryl transferase, score 3.2e-85
862908009156	7 probable transmembrane helices predicted for BMS2454 by TMHMM2.0 at aa 15-37, 58-80, 90-112, 119-141, 176-195, 202-219 and 229-251
862908009157	PS01311 Prolipoprotein diacylglyceryl transferase signature.
862908009158	Protein of unknown function (DUF2489); Region: DUF2489; pfam10675
862908009159	1 probable transmembrane helix predicted for BMS2455 by TMHMM2.0 at aa 5-27
862908009160	Elongator protein 3, MiaB family, Radical SAM; Region: Elp3; smart00729
862908009161	HMMPfam hit to PF04055, Radical SAM, score 5.2e-17
862908009162	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
862908009163	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
862908009164	active site
862908009165	HMMPfam hit to PF00849, Pseudouridine synthase, score 1.7e-21
862908009166	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009167	Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to...; Region: MGS; cd01422
862908009168	active site
862908009169	dimer interfaces [polypeptide binding]; other site
862908009170	catalytic residues [active]
862908009171	HMMPfam hit to PF02142, Methylglyoxal synthase-like, score 5.8e-25
862908009172	PS01335 Methylglyoxal synthase active site.
862908009173	Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]; Region: TrxB; COG0492
862908009174	HMMPfam hit to PF00070, FAD-dependent pyridine nucleotide-disulphide oxidoreductase, score 2.2e-08
862908009175	PS00196 Type-1 copper (blue) proteins signature.
862908009176	tellurium resistance terB-like protein; Region: terB_like; cl11965
862908009177	metal binding site [ion binding]; metal-binding site
862908009178	beta-phosphoglucomutase family hydrolase; Region: PGMB-YQAB-SF; TIGR02009
862908009179	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
862908009180	motif II; other site
862908009181	HMMPfam hit to PF00702, Haloacid dehalogenase-like hydrolase, score 1.5e-12
862908009182	Alpha/beta hydrolase of unknown function (DUF900); Region: DUF900; pfam05990
862908009183	Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Region: BglX; COG1472
862908009184	Glycosyl hydrolase family 3 N terminal domain; Region: Glyco_hydro_3; cl07971
862908009185	Signal peptide predicted for BMS2465 by SignalP 2.0 HMM (Signal peptide probability 0.893) with cleavage site probability 0.819 between residues 16 and 17
862908009186	HMMPfam hit to PF00933, Glycoside hydrolase, family 3, N-terminal, score 2.6e-40
862908009187	PS00775 Glycosyl hydrolases family 3 active site.
862908009188	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908009189	active site
862908009190	phosphorylation site [posttranslational modification]
862908009191	intermolecular recognition site; other site
862908009192	HMMPfam hit to PF00072, Response regulator receiver, score 4.7e-06
862908009193	FOG: CBS domain [General function prediction only]; Region: COG0517
862908009194	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair_16; cd04629
862908009195	HMMPfam hit to PF00571, CBS, score 2.8e-12
862908009196	HMMPfam hit to PF00571, CBS, score 3.7e-09
862908009197	Signal peptide predicted for BMS2469 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.930 between residues 20 and 21
862908009198	M14 family of metallocarboxypeptidases and related proteins; Region: Peptidase_M14_like; cl11393
862908009199	active site
862908009200	Zn binding site [ion binding]; other site
862908009201	Signal peptide predicted for BMS2471 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.859 between residues 18 and 19
862908009202	HMMPfam hit to PF00246, Peptidase M14, carboxypeptidase A, score 3.2e-31
862908009203	PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature.
862908009204	PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature.
862908009205	alpha-L-glutamate ligases, RimK family; Region: rimK_fam; TIGR00768
862908009206	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908009207	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009208	Signal peptide predicted for BMS2473 by SignalP 2.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.796 between residues 16 and 17
862908009209	Sulfate transporter N-terminal domain with GLY motif; Region: Sulfate_tra_GLY; pfam13792
862908009210	Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]; Region: SUL1; COG0659
862908009211	Sulfate transporter family; Region: Sulfate_transp; pfam00916
862908009212	Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function; Region: STAS_SulP_like_sulfate_transporter; cd07042
862908009213	Signal peptide predicted for BMS2474 by SignalP 2.0 HMM (Signal peptide probability 0.950) with cleavage site probability 0.452 between residues 33 and 34
862908009214	12 probable transmembrane helices predicted for BMS2474 by TMHMM2.0 at aa 17-39, 43-60, 65-82, 87-109, 114-136, 156-173, 180-199, 231-253, 273-295, 305-322, 327-349 and 369-391
862908009215	HMMPfam hit to PF00916, Sulphate transporter, score 2.5e-74
862908009216	HMMPfam hit to PF01740, Sulfate transporter/antisigma-factor antagonist STAS, score 8.5e-05
862908009217	Signal peptide predicted for BMS2475 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.995 between residues 17 and 18
862908009218	Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup; Region: M14_ASTE_ASPA_like_1; cd06251
862908009219	Succinylglutamate desuccinylase / Aspartoacylase family; Region: AstE_AspA; pfam04952
862908009220	putative active site [active]
862908009221	Zn binding site [ion binding]; other site
862908009222	HMMPfam hit to PF04952, Succinylglutamate desuccinylase/aspartoacylase, score 2.4e-39
862908009223	ribosomal protein S6 modification protein; Provisional; Region: PRK10446
862908009224	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908009225	SET domain; Region: SET; pfam00856
862908009226	SET domain; Region: SET; pfam00856
862908009227	Integral membrane protein, interacts with FtsH [General function prediction only]; Region: COG0670
862908009228	Bacterial BAX inhibitor (BI)-1/YccA-like proteins; Region: BI-1-like_bacterial; cd10432
862908009229	HMMPfam hit to PF01027, Protein of unknown function UPF0005, score 2.3e-18
862908009230	6 probable transmembrane helices predicted for BMS2481 by TMHMM2.0 at aa 20-42, 57-74, 87-109, 113-132, 139-161 and 211-233
862908009231	Transcriptional regulator; Region: Transcrip_reg; pfam01709
862908009232	HMMPfam hit to PF01709, Protein of unknown function DUF28, score 3.3e-100
862908009233	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
862908009234	Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583
862908009235	HMMPfam hit to PF00583, GCN5-related N-acetyltransferase, score 1.9e-13
862908009236	bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional; Region: PRK13289
862908009237	Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen...; Region: globin; cd01040
862908009238	heme-binding site [chemical binding]; other site
862908009239	FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The...; Region: flavohem_like_fad_nad_binding; cd06184
862908009240	FAD binding pocket [chemical binding]; other site
862908009241	FAD binding motif [chemical binding]; other site
862908009242	phosphate binding motif [ion binding]; other site
862908009243	beta-alpha-beta structure motif; other site
862908009244	NAD binding pocket [chemical binding]; other site
862908009245	HMMPfam hit to PF00175, Oxidoreductase FAD/NAD(P)-binding, score 1.2e-16
862908009246	HMMPfam hit to PF00970, Oxidoreductase FAD-binding region, score 8.3e-07
862908009247	HMMPfam hit to PF00042, Globin, score 4.1e-18
862908009248	Predicted transcriptional regulator [Transcription]; Region: COG1959
862908009249	Transcriptional regulator; Region: Rrf2; cl17282
862908009250	HMMPfam hit to PF02082, Protein of unknown function UPF0074, score 2e-37
862908009251	Protein of unknown function (DUF3703); Region: DUF3703; pfam12487
862908009252	4 probable transmembrane helices predicted for BMS2487 by TMHMM2.0 at aa 129-151, 180-202, 209-226 and 236-253
862908009253	catalase/hydroperoxidase HPI(I); Provisional; Region: PRK15061
862908009254	N-terminal catalytic domain of catalase-peroxidases; Region: catalase_peroxidase_1; cd00649
862908009255	dimer interface [polypeptide binding]; other site
862908009256	active site
862908009257	heme binding site [chemical binding]; other site
862908009258	C-terminal non-catalytic domain of catalase-peroxidases; Region: catalase_peroxidase_2; cd08200
862908009259	HMMPfam hit to PF00141, Haem peroxidase, plant/fungal/bacterial, score 7.9e-83
862908009260	PS00436 Peroxidases active site signature.
862908009261	PS00435 Peroxidases proximal heme-ligand signature.
862908009262	HMMPfam hit to PF00141, Haem peroxidase, plant/fungal/bacterial, score 1.4e-99
862908009263	Flavodoxin-like fold; Region: Flavodoxin_2; cl00438
862908009264	NADPH-dependent FMN reductase; Region: FMN_red; pfam03358
862908009265	HMMPfam hit to PF03358, NADPH-dependent FMN reductase, score 4.3e-53
862908009266	Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]; Region: ACR3; COG0798
862908009267	arsenical-resistance protein; Region: acr3; TIGR00832
862908009268	10 probable transmembrane helices predicted for BMS2490 by TMHMM2.0 at aa 13-35, 50-72, 84-106, 121-143, 160-182, 186-208, 228-245, 255-277, 290-312 and 316-338
862908009269	HMMPfam hit to PF01758, Bile acid:sodium symporter, score 1.6e-50
862908009270	Protein-tyrosine-phosphatase [Signal transduction mechanisms]; Region: Wzb; COG0394
862908009271	Low molecular weight phosphatase family; Region: LMWPc; cd00115
862908009272	active site
862908009273	HMMPfam hit to PF01451, Low molecular weight phosphotyrosine protein phosphatase, score 2e-22
862908009274	Signal peptide predicted for BMS2491 by SignalP 2.0 HMM (Signal peptide probability 0.952) with cleavage site probability 0.759 between residues 19 and 20
862908009275	Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators; Region: HTH_HMRTR; cd04770
862908009276	Hg(II)-responsive transcriptional regulator; Region: MerR; TIGR02051
862908009277	DNA binding residues [nucleotide binding]
862908009278	dimer interface [polypeptide binding]; other site
862908009279	metal binding site [ion binding]; metal-binding site
862908009280	HMMPfam hit to PF00376, Bacterial regulatory protein, MerR, score 2.1e-10
862908009281	Signal peptide predicted for BMS2493 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.996 between residues 27 and 28
862908009282	Signal peptide predicted for BMS2494 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.954 between residues 20 and 21
862908009283	This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins; Region: Glo_EDI_BRP_like; cd06587
862908009284	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
862908009285	active site
862908009286	HMMPfam hit to PF00903, Glyoxalase/bleomycin resistance protein/dioxygenase, score 6.4e-15
862908009287	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
862908009288	FOG: PAS/PAC domain [Signal transduction mechanisms]; Region: AtoS; COG2202
862908009289	putative active site [active]
862908009290	heme pocket [chemical binding]; other site
862908009291	phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966
862908009292	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
862908009293	putative active site [active]
862908009294	heme pocket [chemical binding]; other site
862908009295	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908009296	dimer interface [polypeptide binding]; other site
862908009297	phosphorylation site [posttranslational modification]
862908009298	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908009299	ATP binding site [chemical binding]; other site
862908009300	Mg2+ binding site [ion binding]; other site
862908009301	G-X-G motif; other site
862908009302	Response regulator receiver domain; Region: Response_reg; pfam00072
862908009303	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908009304	active site
862908009305	phosphorylation site [posttranslational modification]
862908009306	intermolecular recognition site; other site
862908009307	dimerization interface [polypeptide binding]; other site
862908009308	HMMPfam hit to PF00072, Response regulator receiver, score 3.2e-25
862908009309	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 3.2e-38
862908009310	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 1.7e-26
862908009311	HMMPfam hit to PF00989, PAS, score 2.5e-07
862908009312	Cupin domain; Region: Cupin_2; cl17218
862908009313	Alpha/beta hydrolase family; Region: Abhydrolase_5; pfam12695
862908009315	HMMPfam hit to PF00072, Response regulator receiver, score 1.8e-10
862908009316	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 3.4e-31
862908009317	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 0.00055
862908009318	1 probable transmembrane helix predicted for BMS2500 by TMHMM2.0 at aa 20-42
862908009319	Domain of unknown function (DUF1730); Region: DUF1730; pfam08331
862908009320	4Fe-4S double cluster binding domain; Region: Fer4_16; pfam13484
862908009321	HMMPfam hit to PF00037, 4Fe-4S ferredoxin, iron-sulfur binding, score 0.00027
862908009322	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
862908009323	Pyruvate kinase [Carbohydrate transport and metabolism]; Region: PykF; COG0469
862908009324	Pyruvate kinase (PK):  Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl17342
862908009325	domain interfaces; other site
862908009326	active site
862908009327	4Fe-4S dicluster domain; Region: Fer4_7; pfam12838
862908009328	HMMPfam hit to PF00037, 4Fe-4S ferredoxin, iron-sulfur binding, score 0.0045
862908009329	HMMPfam hit to PF00037, 4Fe-4S ferredoxin, iron-sulfur binding, score 0.00039
862908009330	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
862908009331	HMMPfam hit to PF02887, Pyruvate kinase, score 8.4e-08
862908009332	HMMPfam hit to PF00224, Pyruvate kinase, score 3.5e-145
862908009333	PS00110 Pyruvate kinase active site signature.
862908009334	Thioredoxin; Region: Thioredoxin_4; pfam13462
862908009335	DSBA-like thioredoxin domain; Region: DSBA; pfam01323
862908009336	HMMPfam hit to PF01323, DSBA oxidoreductase, score 1.7e-26
862908009337	Signal peptide predicted for BMS2504 by SignalP 2.0 HMM (Signal peptide probability 0.972) with cleavage site probability 0.368 between residues 30 and 31
862908009338	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
862908009339	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
862908009340	ATP-binding cassette domain of multidrug resistance protein-like transporters; Region: ABCC_MRP_Like; cd03228
862908009341	Walker A/P-loop; other site
862908009342	ATP binding site [chemical binding]; other site
862908009343	Q-loop/lid; other site
862908009344	ABC transporter signature motif; other site
862908009345	Walker B; other site
862908009346	D-loop; other site
862908009347	H-loop/switch region; other site
862908009348	HMMPfam hit to PF00005, ABC transporter, score 2.5e-22
862908009349	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009350	HMMPfam hit to PF00664, ABC transporter, transmembrane region, score 0.00013
862908009351	5 probable transmembrane helices predicted for BMS2505 by TMHMM2.0 at aa 20-39, 54-76, 136-158, 163-182 and 258-280
862908009352	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
862908009353	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
862908009354	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908009355	Walker A/P-loop; other site
862908009356	ATP binding site [chemical binding]; other site
862908009357	Q-loop/lid; other site
862908009358	ABC transporter signature motif; other site
862908009359	Walker B; other site
862908009360	D-loop; other site
862908009361	H-loop/switch region; other site
862908009362	HMMPfam hit to PF00005, ABC transporter, score 1.9e-25
862908009363	PS00211 ABC transporters family signature.
862908009364	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009365	6 probable transmembrane helices predicted for BMS2506 by TMHMM2.0 at aa 20-39, 61-83, 128-150, 160-179, 240-262 and 272-294
862908009366	HMMPfam hit to PF00664, ABC transporter, transmembrane region, score 0.00011
862908009367	Signal peptide predicted for BMS2507 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.994 between residues 17 and 18
862908009368	PS00190 Cytochrome c family heme-binding site signature.
862908009369	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; pfam13505
862908009370	Signal peptide predicted for BMS2508 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.894 between residues 18 and 19
862908009371	branched-chain amino acid aminotransferase; Provisional; Region: PRK13357
862908009372	BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids  leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and...; Region: BCAT_beta_family; cd01557
862908009373	homodimer interface [polypeptide binding]; other site
862908009374	substrate-cofactor binding pocket; other site
862908009375	catalytic residue [active]
862908009376	HMMPfam hit to PF01063, Aminotransferase, class IV, score 1.3e-97
862908009377	PS00770 Aminotransferases class-IV signature.
862908009378	Protein of unknown function (DUF1504); Region: DUF1504; pfam07399
862908009379	11 probable transmembrane helices predicted for BMS2510 by TMHMM2.0 at aa 4-23, 43-65, 99-121, 134-168, 183-205, 217-239, 269-291, 312-331, 341-363, 376-398 and 413-435
862908009380	HMMPfam hit to PF07399, Protein of unknown function DUF1504, score 2.1e-165
862908009381	PS00012 Phosphopantetheine attachment site.
862908009382	PS00290 Immunoglobulins and major histocompatibility complex proteins signature.
862908009383	4Fe-4S single cluster domain; Region: Fer4_13; pfam13370
862908009384	phosphoglucomutase-2-like protein; Provisional; Region: PTZ00150
862908009385	This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and...; Region: PGM2; cd05799
862908009386	active site
862908009387	substrate binding site [chemical binding]; other site
862908009388	metal binding site [ion binding]; metal-binding site
862908009389	HMMPfam hit to PF02878, Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I, score 8e-54
862908009390	PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature.
862908009391	HMMPfam hit to PF02879, Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II, score 0.00068
862908009392	HMMPfam hit to PF02880, Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III, score 0.055
862908009393	HMMPfam hit to PF00408, Phosphoglucomutase/phosphomannomutase C terminal, score 0.0096
862908009394	ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In...; Region: ExsB; cd01995
862908009395	Ligand Binding Site [chemical binding]; other site
862908009396	HMMPfam hit to PF06508, ExsB, score 1.3e-30
862908009397	Tetratricopeptide repeat; Region: TPR_12; pfam13424
862908009398	Tetratricopeptide repeat; Region: TPR_12; pfam13424
862908009399	dihydroorotate dehydrogenase 2; Reviewed; Region: PRK05286
862908009400	Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires...; Region: DHOD_2_like; cd04738
862908009401	quinone interaction residues [chemical binding]; other site
862908009402	active site
862908009403	catalytic residues [active]
862908009404	FMN binding site [chemical binding]; other site
862908009405	substrate binding site [chemical binding]; other site
862908009406	HMMPfam hit to PF01180, Dihydroorotate dehydrogenase, score 1.5e-74
862908009407	PS00911 Dihydroorotate dehydrogenase signature 1.
862908009408	Signal peptide predicted for BMS2516 by SignalP 2.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.471 between residues 32 and 33
862908009409	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908009410	Signal peptide predicted for BMS2517 by SignalP 2.0 HMM (Signal peptide probability 0.984) with cleavage site probability 0.941 between residues 20 and 21
862908009411	DNA polymerase III subunit alpha; Validated; Region: dnaE; PRK05673
862908009412	Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE3; Region: PHP_PolIIIA_DnaE3; cd12113
862908009413	active site
862908009414	PHP Thumb interface [polypeptide binding]; other site
862908009415	metal binding site [ion binding]; metal-binding site
862908009416	DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains...; Region: DnaE_OBF; cd04485
862908009417	generic binding surface I; other site
862908009418	generic binding surface II; other site
862908009419	HMMPfam hit to PF01336, OB-fold nucleic acid binding, score 5.6e-08
862908009420	HMMPfam hit to PF07733, , score 1.1e-270
862908009421	HMMPfam hit to PF02811, PHP, C-terminal, score 4.7e-36
862908009422	HMMPfam hit to PF02231, Phosphoesterase PHP, N-terminal, score 3.2e-30
862908009423	Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A; Region: CS_ACL-C_CCL; cl00416
862908009424	1 probable transmembrane helix predicted for BMS2519 by TMHMM2.0 at aa 4-26
862908009425	Domain of unknown function (DUF3943); Region: DUF3943; pfam13084
862908009426	Signal peptide predicted for BMS2521 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.587 between residues 20 and 21
862908009427	GMP synthase; Reviewed; Region: guaA; PRK00074
862908009428	Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase; Region: GATase1_GMP_Synthase; cd01742
862908009429	AMP/PPi binding site [chemical binding]; other site
862908009430	candidate oxyanion hole; other site
862908009431	catalytic triad [active]
862908009432	potential glutamine specificity residues [chemical binding]; other site
862908009433	The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched...; Region: GMP_synthase_C; cd01997
862908009434	ATP Binding subdomain [chemical binding]; other site
862908009435	Ligand Binding sites [chemical binding]; other site
862908009436	Dimerization subdomain; other site
862908009437	HMMPfam hit to PF00958, GMP synthase, C-terminal, score 8.3e-64
862908009438	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 5.9e-37
862908009439	PS00442 Glutamine amidotransferases class-I active site.
862908009440	inosine 5'-monophosphate dehydrogenase; Reviewed; Region: PRK05567
862908009441	TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl17186
862908009442	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein.  IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a...; Region: CBS_pair_IMPDH; cd04601
862908009443	IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of...; Region: IMPDH; cd00381
862908009444	active site
862908009445	HMMPfam hit to PF00478, IMP dehydrogenase/GMP reductase, score 1.5e-195
862908009446	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908009447	PS00487 IMP dehydrogenase / GMP reductase signature.
862908009448	HMMPfam hit to PF00571, CBS, score 4.2e-11
862908009449	HMMPfam hit to PF00571, CBS, score 8.3e-12
862908009450	SH3 domain protein; Region: SH3_and_anchor; TIGR04211
862908009451	outer membrane assembly lipoprotein YfiO; Region: OM_YfiO; TIGR03302
862908009452	Cobalamin binding protein BtuF.  These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species.  They belong to the TroA superfamily of helical backbone metal receptor...; Region: BtuF; cd01144
862908009453	Periplasmic binding protein; Region: Peripla_BP_2; pfam01497
862908009454	cobalamin binding residues [chemical binding]; other site
862908009455	putative BtuC binding residues; other site
862908009456	dimer interface [polypeptide binding]; other site
862908009457	HMMPfam hit to PF01497, Periplasmic binding protein, score 2.5e-05
862908009458	Disulphide bond corrector protein DsbC; Region: DsbC; cl15830
862908009459	Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]; Region: COG4232
862908009460	Cytochrome C biogenesis protein transmembrane region; Region: DsbD; cl15788
862908009461	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
862908009462	Signal peptide predicted for BMS2527 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.618 between residues 26 and 27
862908009463	8 probable transmembrane helices predicted for BMS2527 by TMHMM2.0 at aa 349-371, 392-414, 429-451, 478-500, 505-527, 548-567, 571-593 and 600-619
862908009464	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated; Region: gpsA; PRK00094
862908009465	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Region: NAD_Gly3P_dh_N; pfam01210
862908009466	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; Region: NAD_Gly3P_dh_C; pfam07479
862908009467	HMMPfam hit to PF07479, NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal, score 1.4e-53
862908009468	HMMPfam hit to PF01210, NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal, score 1.9e-20
862908009469	1 probable transmembrane helix predicted for BMS2528 by TMHMM2.0 at aa 5-24
862908009470	Signal peptide predicted for BMS2528 by SignalP 2.0 HMM (Signal peptide probability 0.984) with cleavage site probability 0.951 between residues 23 and 24
862908009471	Protein of unknown function (DUF493); Region: DUF493; pfam04359
862908009472	Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011
862908009473	Periplasmic binding protein domain; Region: Peripla_BP_4; pfam13407
862908009474	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: VicK; COG5002
862908009475	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908009476	dimer interface [polypeptide binding]; other site
862908009477	phosphorylation site [posttranslational modification]
862908009478	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908009479	ATP binding site [chemical binding]; other site
862908009480	Mg2+ binding site [ion binding]; other site
862908009481	G-X-G motif; other site
862908009482	2 probable transmembrane helices predicted for BMS2531 by TMHMM2.0 at aa 10-32 and 270-292
862908009483	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 2.3e-12
862908009484	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 9e-27
862908009485	HAD-superfamily hydrolase, subfamily IIIA; Region: HAD-SF-IIIA; TIGR01662
862908009486	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
862908009487	active site
862908009488	motif I; other site
862908009489	motif II; other site
862908009490	DAHP synthetase I family; Region: DAHP_synth_1; pfam00793
862908009491	3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]; Region: KdsA; cl17225
862908009492	HMMPfam hit to PF00793, DAHP synthetase I/KDSA superfamily, score 1.3e-84
862908009493	CTP synthetase; Validated; Region: pyrG; PRK05380
862908009494	CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent...; Region: CTGs; cd03113
862908009495	Catalytic site [active]
862908009496	active site
862908009497	UTP binding site [chemical binding]; other site
862908009498	Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Region: GATase1_CTP_Synthase; cd01746
862908009499	active site
862908009500	putative oxyanion hole; other site
862908009501	catalytic triad [active]
862908009502	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 3.6e-51
862908009503	PS00442 Glutamine amidotransferases class-I active site.
862908009504	HMMPfam hit to PF06418, CTP synthase, score 1.6e-191
862908009505	Signal peptide predicted for BMS2534 by SignalP 2.0 HMM (Signal peptide probability 0.930) with cleavage site probability 0.485 between residues 31 and 32
862908009506	3-deoxy-manno-octulosonate cytidylyltransferase; Provisional; Region: PRK05450
862908009507	CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide; Region: CMP-KDO-Synthetase; cd02517
862908009508	Ligand binding site; other site
862908009509	oligomer interface; other site
862908009510	HMMPfam hit to PF02348, Acylneuraminate cytidylyltransferase, score 6e-21
862908009511	Predicted membrane protein [Function unknown]; Region: COG4905
862908009512	Signal peptide predicted for BMS2536 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.956 between residues 25 and 26
862908009513	Outer membrane efflux protein; Region: OEP; pfam02321
862908009514	Outer membrane efflux protein; Region: OEP; pfam02321
862908009515	Signal peptide predicted for BMS2537 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 23 and 24
862908009516	HMMPfam hit to PF02321, Outer membrane efflux protein, score 0.00098
862908009517	HMMPfam hit to PF02321, Outer membrane efflux protein, score 0.0024
862908009518	Signal peptide predicted for BMS2538 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.965 between residues 20 and 21
862908009519	adenylosuccinate lyase; Provisional; Region: PRK07492
862908009520	Adenylsuccinate lyase (ASL)_subgroup 1; Region: Adenylsuccinate_lyase_1; cd01360
862908009521	tetramer interface [polypeptide binding]; other site
862908009522	active site
862908009523	HMMPfam hit to PF00206, Fumarate lyase, score 1.9e-28
862908009524	PS00163 Fumarate lyases signature.
862908009525	Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]; Region: {ManC}; COG0836
862908009526	GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose; Region: GDP-M1P_Guanylyltransferase; cd02509
862908009527	Substrate binding site; other site
862908009528	Cupin domain; Region: Cupin_2; cl17218
862908009529	HMMPfam hit to PF00483, Nucleotidyl transferase, score 2.7e-55
862908009530	Sporulation related domain; Region: SPOR; pfam05036
862908009531	1 probable transmembrane helix predicted for BMS2541 by TMHMM2.0 at aa 15-34
862908009532	1 probable transmembrane helix predicted for BMS2543 by TMHMM2.0 at aa 15-34
862908009533	Signal peptide predicted for BMS2544 by SignalP 2.0 HMM (Signal peptide probability 0.983) with cleavage site probability 0.616 between residues 27 and 28
862908009534	1 probable transmembrane helix predicted for BMS2544 by TMHMM2.0 at aa 13-31
862908009535	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
862908009536	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
862908009537	Walker A motif; other site
862908009538	ATP binding site [chemical binding]; other site
862908009539	Walker B motif; other site
862908009540	HMMPfam hit to PF00437, Bacterial type II secretion system protein E, score 5.2e-11
862908009541	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009542	aspartate kinase; Validated; Region: PRK08373
862908009543	Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that...; Region: AAK; cl00452
862908009544	nucleotide binding site [chemical binding]; other site
862908009545	substrate binding site [chemical binding]; other site
862908009546	HMMPfam hit to PF00696, Aspartate/glutamate/uridylate kinase, score 8.9e-40
862908009547	PS00324 Aspartokinase signature.
862908009548	putative ABC transporter ATP-binding protein; Reviewed; Region: PRK11819
862908009549	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
862908009550	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
862908009551	ABC transporter; Region: ABC_tran_2; pfam12848
862908009552	ATP-binding cassette domain of elongation factor 3, subfamily F; Region: ABCF_EF-3; cd03221
862908009553	HMMPfam hit to PF00005, ABC transporter, score 2.8e-48
862908009554	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009555	HMMPfam hit to PF00005, ABC transporter, score 3.4e-47
862908009556	PS00211 ABC transporters family signature.
862908009557	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009558	3 probable transmembrane helices predicted for BMS2552 by TMHMM2.0 at aa 89-111, 126-148 and 244-266
862908009559	Predicted SAM-dependent methyltransferases [General function prediction only]; Region: COG1092
862908009560	Middle domain of the SAM-dependent methyltransferase RlmI and related proteins; Region: RlmI_M_like; cd11572
862908009561	putative RNA binding site [nucleotide binding]; other site
862908009562	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908009563	S-adenosylmethionine binding site [chemical binding]; other site
862908009564	Signal peptide predicted for BMS2555 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.962 between residues 18 and 19
862908009565	Signal peptide predicted for BMS2556 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.613 between residues 18 and 19
862908009566	NADH-quinone oxidoreductase, chain I; Region: NuoI; TIGR01971
862908009567	4Fe-4S binding domain; Region: Fer4; cl02805
862908009568	4Fe-4S binding domain; Region: Fer4; cl02805
862908009569	HMMPfam hit to PF00037, 4Fe-4S ferredoxin, iron-sulfur binding, score 1.1e-05
862908009570	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
862908009571	HMMPfam hit to PF00037, 4Fe-4S ferredoxin, iron-sulfur binding, score 4.3e-05
862908009572	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
862908009573	NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]; Region: NuoD; COG0649
862908009574	NADH dehydrogenase subunit D; Validated; Region: PRK06075
862908009575	HMMPfam hit to PF00346, NADH-ubiquinone oxidoreductase, chain 49kDa, score 1.5e-82
862908009576	1 probable transmembrane helix predicted for BMS2559 by TMHMM2.0 at aa 127-149
862908009577	Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Region: Complex1_30kDa; cl16917
862908009578	HMMPfam hit to PF00329, NADH dehydrogenase (ubiquinone), 30 kDa subunit, score 2.1e-31
862908009579	PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature.
862908009580	NADH dehydrogenase subunit B; Validated; Region: PRK06411
862908009581	HMMPfam hit to PF01058, NADH ubiquinone oxidoreductase, 20 kDa subunit, score 1e-55
862908009582	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908009583	Tetratricopeptide repeat; Region: TPR_12; pfam13424
862908009584	HMMPfam hit to PF07719, , score 0.0063; PF07719, Tetratricopeptide repeat
862908009585	Signal peptide predicted for BMS2564 by SignalP 2.0 HMM (Signal peptide probability 0.826) with cleavage site probability 0.384 between residues 24 and 25
862908009586	Protein of unknown function (DUF3897); Region: DUF3897; pfam13036
862908009587	Signal peptide predicted for BMS2565 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.803 between residues 22 and 23
862908009588	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908009589	Signal peptide predicted for BMS2566 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.466 between residues 22 and 23
862908009590	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908009591	Signal peptide predicted for BMS2567 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.710 between residues 18 and 19
862908009592	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cl02931
862908009593	ligand binding site [chemical binding]; other site
862908009594	Signal peptide predicted for BMS2569 by SignalP 2.0 HMM (Signal peptide probability 0.861) with cleavage site probability 0.692 between residues 22 and 23
862908009595	2 probable transmembrane helices predicted for BMS2570 by TMHMM2.0 at aa 34-56 and 86-108
862908009596	PilZ domain; Region: PilZ; pfam07238
862908009597	Domain of unknown function (DUF2341); Region: DUF2341; pfam10102
862908009598	Signal peptide predicted for BMS2572 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.388 between residues 25 and 26
862908009599	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908009600	2 probable transmembrane helices predicted for BMS2573 by TMHMM2.0 at aa 13-35 and 137-159
862908009601	pyridoxamine-phosphate oxidase; Region: pdxH; TIGR00558
862908009602	Pyridoxamine 5'-phosphate oxidase; Region: Pyridox_oxidase; pfam01243
862908009603	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; Region: PNPOx_C; pfam10590
862908009604	HMMPfam hit to PF01243, Pyridoxamine 5'-phosphate oxidase-related, score 1.6e-17
862908009605	Signal peptide predicted for BMS2575 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.991 between residues 20 and 21
862908009606	L,D-transpeptidase catalytic domain; Region: YkuD; pfam03734
862908009607	Signal peptide predicted for BMS2577 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.990 between residues 22 and 23
862908009608	HMMPfam hit to PF03734, ErfK/YbiS/YcfS/YnhG, score 0.0023
862908009609	Signal peptide predicted for BMS2578 by SignalP 2.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.571 between residues 27 and 28
862908009610	PS00036 bZIP transcription factors basic domain signature.
862908009611	Pentapeptide repeats (9 copies); Region: Pentapeptide_4; pfam13599
862908009612	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
862908009613	Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805
862908009614	HMMPfam hit to PF00805, Pentapeptide repeat, score 0.17
862908009615	HMMPfam hit to PF00805, Pentapeptide repeat, score 0.51
862908009616	HMMPfam hit to PF00805, Pentapeptide repeat, score 4.9e-09
862908009617	HAMP domain; Region: HAMP; pfam00672
862908009618	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
862908009619	PAS domain; Region: PAS_9; pfam13426
862908009620	putative active site [active]
862908009621	heme pocket [chemical binding]; other site
862908009622	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908009623	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908009624	dimer interface [polypeptide binding]; other site
862908009625	phosphorylation site [posttranslational modification]
862908009626	Histidine kinase-like ATPases; Region: HATPase_c; smart00387
862908009627	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 2.6e-22
862908009628	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 0.00035
862908009629	HMMPfam hit to PF00672, Histidine kinase, HAMP region, score 0.0029
862908009630	2 probable transmembrane helices predicted for BMS2580 by TMHMM2.0 at aa 13-35 and 149-171
862908009631	Uncharacterized protein family UPF0016; Region: UPF0016; pfam01169
862908009632	HMMPfam hit to PF01169, Protein of unknown function UPF0016, score 1.6e-06
862908009633	1 probable transmembrane helix predicted for BMS2581 by TMHMM2.0 at aa 39-61
862908009634	3 probable transmembrane helices predicted for BMS2582 by TMHMM2.0 at aa 28-50, 62-80 and 84-106
862908009635	4 probable transmembrane helices predicted for BMS2583 by TMHMM2.0 at aa 7-29, 33-51, 72-94 and 98-120
862908009636	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908009637	Domain of unknown function (DUF368); Region: DUF368; pfam04018
862908009638	6 probable transmembrane helices predicted for BMS2584 by TMHMM2.0 at aa 81-103, 113-131, 143-165, 175-197, 210-232 and 295-312
862908009639	HMMPfam hit to PF04018, Protein of unknown function DUF368, score 5.4e-73
862908009640	DNA topoisomerase I; Validated; Region: PRK06599
862908009641	TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I.   Type IA DNA topoisomerases remove (relax) negative supercoils in the...; Region: TOPRIM_TopoIA_TopoI; cd03363
862908009642	active site
862908009643	interdomain interaction site; other site
862908009644	putative metal-binding site [ion binding]; other site
862908009645	nucleotide binding site [chemical binding]; other site
862908009646	DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA...; Region: TOP1Ac; cd00186
862908009647	domain I; other site
862908009648	DNA binding groove [nucleotide binding]
862908009649	phosphate binding site [ion binding]; other site
862908009650	domain II; other site
862908009651	domain III; other site
862908009652	nucleotide binding site [chemical binding]; other site
862908009653	catalytic site [active]
862908009654	domain IV; other site
862908009655	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
862908009656	Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]; Region: TopA; COG0551
862908009657	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
862908009658	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
862908009659	HMMPfam hit to PF01396, DNA topoisomerase I, score 0.046
862908009660	HMMPfam hit to PF01396, DNA topoisomerase I, score 2.4e-15
862908009661	HMMPfam hit to PF01396, DNA topoisomerase I, score 0.0044
862908009662	HMMPfam hit to PF01396, DNA topoisomerase I, score 3.3e-06
862908009663	HMMPfam hit to PF01131, DNA topoisomerase I, score 3.4e-147
862908009664	PS00396 Prokaryotic DNA topoisomerase I active site.
862908009665	HMMPfam hit to PF01751, TOPRIM, score 3.3e-30
862908009666	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
862908009667	HMMPfam hit to PF01476, Peptidoglycan-binding LysM, score 1.6e-09
862908009668	Signal peptide predicted for BMS2586 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 1.000 between residues 21 and 22
862908009669	Tetratricopeptide repeat; Region: TPR_16; pfam13432
862908009670	1 probable transmembrane helix predicted for BMS2587 by TMHMM2.0 at aa 13-35
862908009671	Signal peptide predicted for BMS2588 by SignalP 2.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.739 between residues 22 and 23
862908009672	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908009673	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
862908009674	Signal peptide predicted for BMS2589 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.782 between residues 19 and 20
862908009675	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
862908009676	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
862908009677	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908009678	Walker A/P-loop; other site
862908009679	ATP binding site [chemical binding]; other site
862908009680	Q-loop/lid; other site
862908009681	ABC transporter signature motif; other site
862908009682	Walker B; other site
862908009683	D-loop; other site
862908009684	H-loop/switch region; other site
862908009685	HMMPfam hit to PF00005, ABC transporter, score 1.5e-66
862908009686	PS00211 ABC transporters family signature.
862908009687	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009688	HMMPfam hit to PF00664, ABC transporter, transmembrane region, score 7.2e-36
862908009689	5 probable transmembrane helices predicted for BMS2590 by TMHMM2.0 at aa 21-43, 69-91, 149-168, 172-191 and 253-275
862908009690	Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490
862908009691	putative catalytic site [active]
862908009692	putative metal binding site [ion binding]; other site
862908009693	putative phosphate binding site [ion binding]; other site
862908009694	HMMPfam hit to PF03372, Endonuclease/exonuclease/phosphatase, score 1.2e-06
862908009695	Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]; Region: AhpC; COG0450
862908009696	Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing...; Region: PRX_BCP; cd03017
862908009697	catalytic triad [active]
862908009698	HMMPfam hit to PF00578, Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen, score 4e-45
862908009699	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908009700	Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446
862908009701	Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]; Region: COG2220
862908009702	HMMPfam hit to PF00753, Beta-lactamase-like, score 8.3e-30
862908009703	Peptidase family M48; Region: Peptidase_M48; pfam01435
862908009704	6 probable transmembrane helices predicted for BMS2595 by TMHMM2.0 at aa 69-91, 106-128, 149-171, 175-197, 293-315 and 330-352
862908009705	HMMPfam hit to PF01435, Peptidase M48, Ste24p, score 3.1e-42
862908009706	Signal peptide predicted for BMS2596 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.845 between residues 19 and 20
862908009707	methylated-DNA--protein-cysteine methyltransferase; Provisional; Region: PRK00901
862908009708	The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445
862908009709	DNA binding site [nucleotide binding]
862908009710	active site
862908009711	HMMPfam hit to PF01035, Methylated-DNA-[protein]-cysteine S-methyltransferase, score 1.4e-41
862908009712	PS00374 Methylated-DNA--protein-cysteine methyltransferase active site.
862908009713	Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GAT_1; cl00020
862908009714	conserved cys residue [active]
862908009715	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 7e-06
862908009716	PS00442 Glutamine amidotransferases class-I active site.
862908009717	GAF domain-containing protein [Signal transduction mechanisms]; Region: COG1956
862908009718	Lysophospholipase [Lipid metabolism]; Region: PldB; COG2267
862908009719	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
862908009720	HMMPfam hit to PF00561, Alpha/beta hydrolase fold, score 4.7e-05
862908009721	Protein of unknown function (DUF525); Region: DUF525; cl01119
862908009722	Protein of unknown function (DUF2797); Region: DUF2797; pfam10977
862908009723	Phospholipase/Carboxylesterase; Region: Abhydrolase_2; pfam02230
862908009724	Serine hydrolase (FSH1); Region: FSH1; pfam03959
862908009725	HMMPfam hit to PF02230, Phospholipase/Carboxylesterase, score 2.7e-17
862908009726	Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]; Region: Nth; COG0177
862908009727	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
862908009728	minor groove reading motif; other site
862908009729	helix-hairpin-helix signature motif; other site
862908009730	substrate binding pocket [chemical binding]; other site
862908009731	active site
862908009732	HMMPfam hit to PF00730, HhH-GPD, score 2.4e-20
862908009733	PS01155 Endonuclease III family signature.
862908009734	HMMPfam hit to PF00633, Helix-hairpin-helix motif, score 0.0012
862908009735	Biotin/lipoate A/B protein ligase family; Region: BPL_LplA_LipB; cl14057
862908009736	HMMPfam hit to PF03099, Biotin/lipoate A/B protein ligase, score 7.7e-06
862908009737	PS01313 Lipoate-protein ligase B signature.
862908009738	lipoyl synthase; Provisional; Region: PRK05481
862908009739	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cl15377
862908009740	FeS/SAM binding site; other site
862908009741	HMMPfam hit to PF04055, Radical SAM, score 5.2e-20
862908009742	PS00190 Cytochrome c family heme-binding site signature.
862908009743	Signal peptide predicted for BMS2610 by SignalP 2.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.891 between residues 30 and 31
862908009744	Haemolytic domain; Region: Haemolytic; pfam01809
862908009745	HMMPfam hit to PF01809, Protein of unknown function DUF37, score 1.5e-33
862908009746	D-Ala-D-Ala carboxypeptidase 3 (S13) family; Region: Peptidase_S13; cl17429
862908009747	D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family; Region: PBP4; TIGR00666
862908009748	HMMPfam hit to PF02113, Peptidase S13, D-Ala-D-Ala carboxypeptidase C, score 1.8e-19
862908009749	6-pyruvoyl tetrahydropterin synthase; Region: PTPS; pfam01242
862908009750	Predicted transcriptional regulators [Transcription]; Region: SoxR; COG0789
862908009751	Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA; Region: HTH_MlrA-CarA; cd01104
862908009752	DNA binding residues [nucleotide binding]
862908009753	B12 binding domain; Region: B12-binding_2; pfam02607
862908009754	B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase; Region: B12-binding_like; cl00293
862908009755	HMMPfam hit to PF00376, Bacterial regulatory protein, MerR, score 0.00075
862908009756	PS00552 Bacterial regulatory proteins, merR family signature.
862908009757	atypical (a) SDRs, subgroup 8; Region: SDR_a8; cd05242
862908009758	Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]; Region: COG1090
862908009759	putative NAD(P) binding site [chemical binding]; other site
862908009760	putative active site [active]
862908009761	Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins; Region: SRPBCC_3; cd07820
862908009762	putative hydrophobic ligand binding site [chemical binding]; other site
862908009763	Lipocalin-like domain; Region: Lipocalin_2; pfam08212
862908009764	Signal peptide predicted for BMS2617 by SignalP 2.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.460 between residues 19 and 20
862908009765	PS00213 Lipocalin signature.
862908009766	Protein of unknown function (DUF523); Region: DUF523; pfam04463
862908009767	Uncharacterized conserved protein [Function unknown]; Region: COG3272
862908009768	Protein of unknown function (DUF1722); Region: DUF1722; pfam08349
862908009769	HMMPfam hit to PF04463, Protein of unknown function DUF523, score 7.6e-22
862908009770	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
862908009771	Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]; Region: PhrB; COG0415
862908009772	DNA photolyase; Region: DNA_photolyase; pfam00875
862908009773	HMMPfam hit to PF00875, DNA photolyase, N-terminal, score 1.8e-33
862908009774	HMMPfam hit to PF03441, DNA photolyase, FAD-binding, score 5.9e-91
862908009775	PS00394 DNA photolyases class 1 signature 1.
862908009776	PS00691 DNA photolyases class 1 signature 2.
862908009777	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908009778	Flavin reductase like domain; Region: Flavin_Reduct; pfam01613
862908009779	PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature.
862908009780	Peptidase domain in the S8 and S53 families; Region: Peptidases_S8_S53; cd00306
862908009781	active site
862908009782	catalytic residues [active]
862908009783	Signal peptide predicted for BMS2622 by SignalP 2.0 HMM (Signal peptide probability 0.991) with cleavage site probability 0.977 between residues 17 and 18
862908009784	HMMPfam hit to PF00082, Peptidase S8 and S53, subtilisin, kexin, sedolisin, score 2.7e-05
862908009785	PS00138 Serine proteases, subtilase family, serine active site.
862908009786	HMMPfam hit to PF01814, Hemerythrin, score 3.4e-06
862908009787	2 probable transmembrane helices predicted for BMS2624 by TMHMM2.0 at aa 13-32 and 37-56
862908009788	primosome assembly protein PriA; Validated; Region: PRK05580
862908009789	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
862908009790	ATP binding site [chemical binding]; other site
862908009791	putative Mg++ binding site [ion binding]; other site
862908009792	helicase superfamily c-terminal domain; Region: HELICc; smart00490
862908009793	HMMPfam hit to PF00271, Helicase, C-terminal, score 0.0003
862908009794	HMMPfam hit to PF00270, DEAD/DEAH box helicase, N-terminal, score 2.9e-11
862908009795	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 1.6e-08
862908009796	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009797	cysteinyl-tRNA synthetase; Validated; Region: cysS; PRK00260
862908009798	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
862908009799	active site
862908009800	HIGH motif; other site
862908009801	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
862908009802	KMSKS motif; other site
862908009803	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
862908009804	tRNA binding surface [nucleotide binding]; other site
862908009805	anticodon binding site; other site
862908009806	HMMPfam hit to PF01406, Cysteinyl-tRNA synthetase, class Ia, score 1.9e-151
862908009807	dihydroorotase; Validated; Region: PRK09060
862908009808	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
862908009809	Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family; Region: DHOase_IIb; cd01318
862908009810	active site
862908009811	HMMPfam hit to PF01979, Amidohydrolase, score 6e-13
862908009812	PS00483 Dihydroorotase signature 2.
862908009813	Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on...; Region: cytidine_deaminase; cd01283
862908009814	active site
862908009815	catalytic motif [active]
862908009816	Zn binding site [ion binding]; other site
862908009817	HMMPfam hit to PF00383, Cytidine/deoxycytidylate deaminase, zinc-binding region, score 1.8e-17
862908009818	Type I GTP cyclohydrolase folE2; Region: GCHY-1; cl00642
862908009819	HMMPfam hit to PF02649, Protein of unknown function DUF198, score 7.5e-08
862908009820	Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490
862908009821	putative catalytic site [active]
862908009822	putative phosphate binding site [ion binding]; other site
862908009823	putative metal binding site [ion binding]; other site
862908009824	HMMPfam hit to PF03372, Endonuclease/exonuclease/phosphatase, score 3.2e-06
862908009825	chemotaxis-specific methylesterase; Provisional; Region: PRK00742
862908009826	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908009827	active site
862908009828	phosphorylation site [posttranslational modification]
862908009829	intermolecular recognition site; other site
862908009830	dimerization interface [polypeptide binding]; other site
862908009831	CheB methylesterase; Region: CheB_methylest; pfam01339
862908009832	HMMPfam hit to PF01339, CheB methylesterase, score 4.8e-84
862908009833	HMMPfam hit to PF00072, Response regulator receiver, score 3.1e-23
862908009834	CheR methyltransferase, all-alpha domain; Region: CheR_N; pfam03705
862908009835	Methyltransferase, chemotaxis proteins; Region: MeTrc; smart00138
862908009836	CheR methyltransferase, SAM binding domain; Region: CheR; pfam01739
862908009837	Response regulator receiver domain; Region: Response_reg; pfam00072
862908009838	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908009839	active site
862908009840	phosphorylation site [posttranslational modification]
862908009841	intermolecular recognition site; other site
862908009842	dimerization interface [polypeptide binding]; other site
862908009843	HMMPfam hit to PF00072, Response regulator receiver, score 4.2e-23
862908009844	HMMPfam hit to PF01739, MCP methyltransferase, CheR-type, score 2.8e-40
862908009845	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
862908009846	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
862908009847	dimer interface [polypeptide binding]; other site
862908009848	putative CheW interface [polypeptide binding]; other site
862908009849	HMMPfam hit to PF00015, Bacterial chemotaxis sensory transducer, score 6.4e-37
862908009850	2 probable transmembrane helices predicted for BMS2634 by TMHMM2.0 at aa 15-37 and 340-362
862908009851	Signal peptide predicted for BMS2634 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.413 between residues 42 and 43
862908009852	Cache domain; Region: Cache_2; cl07034
862908009853	Signal peptide predicted for BMS2635 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.953 between residues 21 and 22
862908009854	CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together...; Region: CheW; cd00732
862908009855	putative CheA interaction surface; other site
862908009856	HMMPfam hit to PF01584, CheW-like protein, score 5e-31
862908009857	Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]; Region: CheA; COG0643
862908009858	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
862908009859	putative binding surface; other site
862908009860	active site
862908009861	Signal transducing histidine kinase, homodimeric domain; Region: H-kinase_dim; pfam02895
862908009862	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908009863	ATP binding site [chemical binding]; other site
862908009864	Mg2+ binding site [ion binding]; other site
862908009865	G-X-G motif; other site
862908009866	CheA regulatory domain; CheA is a histidine protein kinase present in bacteria and archea. Activated by the chemotaxis receptor a histidine phosphoryl group from CheA is passed directly to an aspartate in the response regulator CheY. This signalling...; Region: CheA_reg; cd00731
862908009867	HMMPfam hit to PF01584, CheW-like protein, score 1.1e-16
862908009868	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 6.6e-33
862908009869	HMMPfam hit to PF02895, Signal transducing histidine kinase, homodimeric, score 1.6e-08
862908009870	HMMPfam hit to PF01627, Hpt, score 7.7e-16
862908009871	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Region: Glyoxalase; pfam00903
862908009872	Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione; Region: Glyoxalase_I; cd07233
862908009873	dimer interface [polypeptide binding]; other site
862908009874	active site
862908009875	metal binding site [ion binding]; metal-binding site
862908009876	glutathione binding site [chemical binding]; other site
862908009877	HMMPfam hit to PF00903, Glyoxalase/bleomycin resistance protein/dioxygenase, score 1.3e-19
862908009878	ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]; Region: Lon; COG0466
862908009879	Found in ATP-dependent protease La (LON); Region: LON; smart00464
862908009880	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908009881	Walker A motif; other site
862908009882	ATP binding site [chemical binding]; other site
862908009883	Walker B motif; other site
862908009884	arginine finger; other site
862908009885	Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362
862908009886	HMMPfam hit to PF05362, Peptidase S16, lon C-terminal, score 2.7e-136
862908009887	PS01046 ATP-dependent serine proteases, lon family, serine active site.
862908009888	HMMPfam hit to PF00004, AAA ATPase, central region, score 1.4e-51
862908009889	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009890	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009891	HMMPfam hit to PF02190, Peptidase S16, lon N-terminal, score 3.3e-41
862908009892	ATP-dependent protease ATP-binding subunit ClpX; Provisional; Region: clpX; PRK05342
862908009893	ClpX C4-type zinc finger; Region: zf-C4_ClpX; pfam06689
862908009894	Magnesium chelatase, subunit ChlI; Region: Mg_chelatase; pfam01078
862908009895	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908009896	Walker A motif; other site
862908009897	ATP binding site [chemical binding]; other site
862908009898	Walker B motif; other site
862908009899	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
862908009900	HMMPfam hit to PF00004, AAA ATPase, central region, score 4.3e-29
862908009901	HMMPfam hit to PF07724, , score 8.6e-76
862908009902	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009903	HMMPfam hit to PF06689, ClpX C4-type zinc finger, score 8.5e-23
862908009904	Clp protease; Region: CLP_protease; pfam00574
862908009905	Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017
862908009906	oligomer interface [polypeptide binding]; other site
862908009907	active site residues [active]
862908009908	HMMPfam hit to PF00574, Peptidase S14, ClpP, score 1e-111
862908009909	PS00382 Endopeptidase Clp histidine active site.
862908009910	PS00381 Endopeptidase Clp serine active site.
862908009911	Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]; Region: AhpC; COG0450
862908009912	Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides; Region: PRX_Typ2cys; cd03015
862908009913	dimer interface [polypeptide binding]; other site
862908009914	decamer (pentamer of dimers) interface [polypeptide binding]; other site
862908009915	catalytic triad [active]
862908009916	peroxidatic and resolving cysteines [active]
862908009917	HMMPfam hit to PF00578, Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen, score 1.4e-74
862908009918	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
862908009919	SNARE associated Golgi protein; Region: SNARE_assoc; pfam09335
862908009920	5 probable transmembrane helices predicted for BMS2643 by TMHMM2.0 at aa 13-32, 52-74, 109-131, 141-160 and 173-190
862908009921	HMMPfam hit to PF00597, DedA, score 5.3e-08
862908009922	PilZ domain; Region: PilZ; pfam07238
862908009923	NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]; Region: COG1875
862908009924	PIN domain of bacterial Smg6-like homologs with PhoH-like ATPase domains; Region: PIN_PhoHL-ATPase; cd09883
862908009925	putative active site [active]
862908009926	PhoH-like protein; Region: PhoH; pfam02562
862908009927	HMMPfam hit to PF02562, PhoH-like protein, score 4e-35
862908009928	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009929	Signal peptide predicted for BMS2647 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.996 between residues 18 and 19
862908009930	Signal peptide predicted for BMS2648 by SignalP 2.0 HMM (Signal peptide probability 0.891) with cleavage site probability 0.339 between residues 26 and 27
862908009931	aspartate aminotransferase; Provisional; Region: PRK05764
862908009932	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
862908009933	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908009934	homodimer interface [polypeptide binding]; other site
862908009935	catalytic residue [active]
862908009936	HMMPfam hit to PF00155, Aminotransferase, class I and II, score 3e-22
862908009937	PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site.
862908009938	phosphopantetheine adenylyltransferase; Provisional; Region: coaD; PRK00168
862908009939	Phosphopantetheine adenylyltransferase; Region: PPAT; cd02163
862908009940	active site
862908009941	(T/H)XGH motif; other site
862908009942	HMMPfam hit to PF01467, Cytidylyltransferase, score 6.2e-30
862908009943	N6-adenine-specific methylase [DNA replication, recombination, and repair]; Region: COG0742
862908009944	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
862908009945	HMMPfam hit to PF03602, Conserved hypothetical protein 95, score 4.7e-17
862908009946	PS00092 N-6 Adenine-specific DNA methylases signature.
862908009947	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
862908009948	Protein of unknown function, DUF399; Region: DUF399; cl01139
862908009949	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908009950	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908009951	ATP binding site [chemical binding]; other site
862908009952	Mg2+ binding site [ion binding]; other site
862908009953	G-X-G motif; other site
862908009954	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 1.2e-10
862908009955	1 probable transmembrane helix predicted for BMS2656 by TMHMM2.0 at aa 169-191
862908009956	Signal peptide predicted for BMS2656 by SignalP 2.0 HMM (Signal peptide probability 0.959) with cleavage site probability 0.937 between residues 31 and 32
862908009957	Gram-negative bacterial tonB protein; Region: TonB; cl10048
862908009958	1 probable transmembrane helix predicted for BMS2657 by TMHMM2.0 at aa 12-34
862908009959	Signal peptide predicted for BMS2661 by SignalP 2.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.383 between residues 20 and 21
862908009960	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908009961	PS00018 EF-hand calcium-binding domain.
862908009962	glutathione synthetase; Provisional; Region: PRK05246
862908009963	Prokaryotic glutathione synthetase, N-terminal domain; Region: GSH-S_N; pfam02951
862908009964	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908009965	Predicted aminopeptidase (DUF2265); Region: DUF2265; cl17720
862908009966	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908009967	Signal peptide predicted for BMS2663 by SignalP 2.0 HMM (Signal peptide probability 0.873) with cleavage site probability 0.485 between residues 20 and 21
862908009968	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908009969	Signal peptide predicted for BMS2664 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 between residues 20 and 21
862908009970	(dimethylallyl)adenosine tRNA methylthiotransferase; Provisional; Region: PRK14325
862908009971	Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919
862908009972	HMMPfam hit to PF04055, Radical SAM, score 1.4e-25
862908009973	PS01278 Uncharacterized protein family UPF0004 signature.
862908009974	HMMPfam hit to PF00919, Protein of unknown function UPF0004, score 8.4e-34
862908009975	ATP-dependent Clp protease ATP-binding subunit clpA; Region: ClpA; TIGR02639
862908009976	Clp amino terminal domain; Region: Clp_N; pfam02861
862908009977	The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid.  N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a...; Region: Ntn_hydrolase; cl00467
862908009978	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908009979	Walker A motif; other site
862908009980	ATP binding site [chemical binding]; other site
862908009981	Walker B motif; other site
862908009982	arginine finger; other site
862908009983	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908009984	Walker A motif; other site
862908009985	ATP binding site [chemical binding]; other site
862908009986	Walker B motif; other site
862908009987	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
862908009988	HMMPfam hit to PF00004, AAA ATPase, central region, score 5.6e-06
862908009989	HMMPfam hit to PF07724, , score 1.1e-89
862908009990	PS00871 Chaperonins clpA/B signature 2.
862908009991	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009992	HMMPfam hit to PF00004, AAA ATPase, central region, score 4e-11
862908009993	PS00870 Chaperonins clpA/B signature 1.
862908009994	PS00017 ATP/GTP-binding site motif A (P-loop).
862908009995	HMMPfam hit to PF02861, Clp, N terminal, score 1.2e-08
862908009996	Uncharacterized conserved protein [Function unknown]; Region: COG2127
862908009997	HMMPfam hit to PF02617, ATP-dependent Clp protease adaptor protein ClpS, score 3e-36
862908009998	Tellurite resistance protein TerB; Region: TerB; pfam05099
862908009999	HMMPfam hit to PF07049, Protein of unknown function DUF1332, score 3.9e-05
862908010000	Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which...; Region: ZnMc; cl00064
862908010001	active site
862908010002	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908010003	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
862908010004	RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal...; Region: RaiA; cd00552
862908010005	30S subunit binding site; other site
862908010006	HMMPfam hit to PF02482, Sigma 54 modulation protein/ribosomal protein S30EA, score 9.6e-11
862908010007	RNA polymerase factor sigma-54; Reviewed; Region: PRK05932
862908010008	Sigma-54 factor, Activator interacting domain (AID); Region: Sigma54_AID; pfam00309
862908010009	Sigma-54 factor, core binding domain; Region: Sigma54_CBD; pfam04963
862908010010	Sigma-54, DNA binding domain; Region: Sigma54_DBD; pfam04552
862908010011	HMMPfam hit to PF04552, Sigma-54, DNA-binding, score 1.7e-98
862908010012	PS00718 Sigma-54 factors family signature 2.
862908010013	PS00717 Sigma-54 factors family signature 1.
862908010014	HMMPfam hit to PF04963, Sigma-54 factor, core-binding region, score 2.9e-45
862908010015	HMMPfam hit to PF00309, Sigma-54 factor, score 4e-14
862908010016	ABC-type (unclassified) transport system, ATPase component [General function prediction only]; Region: YhbG; COG1137
862908010017	ATP-binding cassette component of YhbG transport system; Region: ABC_YhbG; cd03218
862908010018	Walker A/P-loop; other site
862908010019	ATP binding site [chemical binding]; other site
862908010020	Q-loop/lid; other site
862908010021	ABC transporter signature motif; other site
862908010022	Walker B; other site
862908010023	D-loop; other site
862908010024	H-loop/switch region; other site
862908010025	HMMPfam hit to PF00005, ABC transporter, score 2.1e-61
862908010026	PS00211 ABC transporters family signature.
862908010027	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010028	lipopolysaccharide transport periplasmic protein LptA; Region: outer_YhbN_LptA; TIGR03002
862908010029	1 probable transmembrane helix predicted for BMS2676 by TMHMM2.0 at aa 9-28
862908010030	DNA mismatch repair protein MutS; Provisional; Region: PRK05399
862908010031	MutS domain I; Region: MutS_I; pfam01624
862908010032	MutS domain II; Region: MutS_II; pfam05188
862908010033	MutS domain III; Region: MutS_III; pfam05192
862908010034	MutS domain V; Region: MutS_V; pfam00488
862908010035	Walker A/P-loop; other site
862908010036	ATP binding site [chemical binding]; other site
862908010037	Q-loop/lid; other site
862908010038	ABC transporter signature motif; other site
862908010039	Walker B; other site
862908010040	D-loop; other site
862908010041	H-loop/switch region; other site
862908010042	HMMPfam hit to PF01624, DNA mismatch repair protein MutS, N-terminal, score 4.6e-58
862908010043	HMMPfam hit to PF05192, MutS III, score 3.4e-41
862908010044	HMMPfam hit to PF05190, MutS IV, score 1.4e-30
862908010045	HMMPfam hit to PF00488, DNA mismatch repair protein MutS, C-terminal, score 2.9e-116
862908010046	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010047	PS00486 DNA mismatch repair proteins mutS family signature.
862908010048	L,D-transpeptidase catalytic domain; Region: YkuD_2; pfam13645
862908010049	Signal peptide predicted for BMS2678 by SignalP 2.0 HMM (Signal peptide probability 0.812) with cleavage site probability 0.797 between residues 17 and 18
862908010050	RDD family; Region: RDD; pfam06271
862908010051	HMMPfam hit to PF06271, RDD, score 2.5e-08
862908010052	3 probable transmembrane helices predicted for BMS2679 by TMHMM2.0 at aa 28-50, 70-92 and 123-145
862908010053	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cl17432
862908010054	substrate binding pocket [chemical binding]; other site
862908010055	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
862908010056	membrane-bound complex binding site; other site
862908010057	hinge residues; other site
862908010058	aspartyl-tRNA synthetase; Validated; Region: aspS; PRK00476
862908010059	EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND)...; Region: EcAspRS_like_N; cd04317
862908010060	dimer interface [polypeptide binding]; other site
862908010061	anticodon binding site; other site
862908010062	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
862908010063	motif 1; other site
862908010064	dimer interface [polypeptide binding]; other site
862908010065	active site
862908010066	motif 2; other site
862908010067	GAD domain; Region: GAD; pfam02938
862908010068	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
862908010069	active site
862908010070	motif 3; other site
862908010071	HMMPfam hit to PF00152, tRNA synthetase, class II (D, K and N), score 6e-12
862908010072	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
862908010073	HMMPfam hit to PF02938, GAD, score 4.3e-15
862908010074	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
862908010075	HMMPfam hit to PF01336, OB-fold nucleic acid binding, score 3.2e-18
862908010076	Uncharacterized ACR, COG1430; Region: DUF192; cl00627
862908010077	HMMPfam hit to PF02643, Protein of unknown function DUF192, score 2.3e-18
862908010078	Septum formation initiator [Cell division and chromosome partitioning]; Region: COG2919
862908010079	Septum formation initiator; Region: DivIC; pfam04977
862908010080	1 probable transmembrane helix predicted for BMS2684 by TMHMM2.0 at aa 199-221
862908010081	YGGT family; Region: YGGT; pfam02325
862908010082	HMMPfam hit to PF02325, Protein of unknown function YGGT, score 0.00033
862908010083	2 probable transmembrane helices predicted for BMS2686 by TMHMM2.0 at aa 7-24 and 55-74
862908010084	Virulence factor BrkB; Region: Virul_fac_BrkB; pfam03631
862908010085	HMMPfam hit to PF03631, Ribonuclease BN, score 2.9e-06
862908010086	6 probable transmembrane helices predicted for BMS2687 by TMHMM2.0 at aa 30-52, 96-118, 135-157, 193-215, 228-250 and 265-287
862908010087	PS00211 ABC transporters family signature.
862908010088	DNA polymerase II; Reviewed; Region: PRK05762
862908010089	DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; Region: DnaQ_like_exo; cl10012
862908010090	active site
862908010091	catalytic site [active]
862908010092	substrate binding site [chemical binding]; other site
862908010093	DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both...; Region: POLBc; cl10023
862908010094	active site
862908010095	metal-binding site
862908010096	HMMPfam hit to PF00136, DNA polymerase B region, score 3.3e-55
862908010097	PS00116 DNA polymerase family B signature.
862908010098	HMMPfam hit to PF03104, DNA polymerase B, exonuclease, score 1.4e-21
862908010099	Peptidase M15; Region: Peptidase_M15_3; cl01194
862908010100	Signal peptide predicted for BMS2690 by SignalP 2.0 HMM (Signal peptide probability 0.977) with cleavage site probability 0.669 between residues 19 and 20
862908010101	3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]; Region: KdsA; cl17225
862908010102	Chorismate mutase type II; Region: CM_2; smart00830
862908010103	HMMPfam hit to PF00793, DAHP synthetase I/KDSA superfamily, score 5.6e-30
862908010104	HMMPfam hit to PF01817, Chorismate mutase, score 2.8e-10
862908010105	aspartate aminotransferase; Provisional; Region: PRK05764
862908010106	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
862908010107	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908010108	homodimer interface [polypeptide binding]; other site
862908010109	catalytic residue [active]
862908010110	HMMPfam hit to PF00155, Aminotransferase, class I and II, score 2.1e-52
862908010111	arogenate dehydrogenase; Region: PLN02256
862908010112	Prephenate dehydrogenase [Amino acid transport and metabolism]; Region: TyrA; COG0287
862908010113	HMMPfam hit to PF02153, Prephenate dehydrogenase, score 9.4e-11
862908010114	Prephenate dehydratase [Amino acid transport and metabolism]; Region: PheA; COG0077
862908010115	Prephenate dehydratase; Region: PDT; pfam00800
862908010116	C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme; Region: ACT_CM-PDT; cd04905
862908010117	putative L-Phe binding site [chemical binding]; other site
862908010118	HMMPfam hit to PF00800, Prephenate dehydratase, score 2.2e-21
862908010119	HMMPfam hit to PF01842, Amino acid-binding ACT, score 0.00063
862908010120	PS00858 Prephenate dehydratase signature 2.
862908010121	5 probable transmembrane helices predicted for BMS2695 by TMHMM2.0 at aa 5-23, 28-50, 62-81, 131-148 and 155-177
862908010122	WYL domain; Region: WYL; cl14852
862908010123	1 probable transmembrane helix predicted for BMS2697 by TMHMM2.0 at aa 7-29
862908010124	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
862908010125	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
862908010126	active site
862908010127	HMMPfam hit to PF00849, Pseudouridine synthase, score 1.7e-17
862908010128	PS01129 Rlu family of pseudouridine synthase signature.
862908010129	Flagellar motor protein [Cell motility and secretion]; Region: MotB; COG1360
862908010130	Membrane MotB of proton-channel complex MotA/MotB; Region: MotB_plug; pfam13677
862908010131	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
862908010132	ligand binding site [chemical binding]; other site
862908010133	1 probable transmembrane helix predicted for BMS2699 by TMHMM2.0 at aa 32-54
862908010134	MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568
862908010135	Flagellar motor component [Cell motility and secretion]; Region: MotA; COG1291
862908010136	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel, score 3.6e-06
862908010137	PS01307 Flagellar motor protein motA family signature.
862908010138	4 probable transmembrane helices predicted for BMS2700 by TMHMM2.0 at aa 5-24, 28-50, 144-166 and 176-198
862908010139	Signal peptide predicted for BMS2700 by SignalP 2.0 HMM (Signal peptide probability 0.779) with cleavage site probability 0.372 between residues 16 and 17
862908010140	PS00190 Cytochrome c family heme-binding site signature.
862908010141	Signal peptide predicted for BMS2701 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.965 between residues 17 and 18
862908010142	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
862908010143	Signal peptide predicted for BMS2702 by SignalP 2.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.854 between residues 17 and 18
862908010144	Signal peptide predicted for BMS2704 by SignalP 2.0 HMM (Signal peptide probability 0.973) with cleavage site probability 0.738 between residues 22 and 23
862908010145	Signal peptide predicted for BMS2706 by SignalP 2.0 HMM (Signal peptide probability 0.939) with cleavage site probability 0.915 between residues 27 and 28
862908010146	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908010147	chorismate binding enzyme; Region: Chorismate_bind; pfam00425
862908010148	HMMPfam hit to PF00425, Anthranilate synthase component I and chorismate binding protein, score 1.1e-15
862908010149	replicative DNA helicase; Region: DnaB; TIGR00665
862908010150	DnaB-like helicase N terminal domain; Region: DnaB; pfam00772
862908010151	DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a...; Region: DnaB_C; cd00984
862908010152	Walker A motif; other site
862908010153	ATP binding site [chemical binding]; other site
862908010154	Walker B motif; other site
862908010155	DNA binding loops [nucleotide binding]
862908010156	HMMPfam hit to PF03796, DnaB-like helicase, C-terminal, score 7.6e-105
862908010157	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010158	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010159	HMMPfam hit to PF00772, DnaB-like helicase, N-terminal, score 1.9e-28
862908010160	50S ribosomal protein L9; Reviewed; Region: rplI; PRK00137
862908010161	Ribosomal protein L9, N-terminal domain; Region: Ribosomal_L9_N; pfam01281
862908010162	Ribosomal protein L9, C-terminal domain; Region: Ribosomal_L9_C; pfam03948
862908010163	HMMPfam hit to PF03948, Ribosomal protein L9, score 1.8e-10
862908010164	HMMPfam hit to PF01281, Ribosomal protein L9, score 6.3e-18
862908010165	Predicted membrane protein (DUF2232); Region: DUF2232; cl01728
862908010166	8 probable transmembrane helices predicted for BMS2712 by TMHMM2.0 at aa 34-56, 71-90, 97-116, 131-148, 196-218, 248-270, 277-299 and 314-336
862908010167	Ribosomal protein S6; Region: Ribosomal_S6; pfam01250
862908010168	30S ribosomal protein S18; Reviewed; Region: rpsR; PRK00391
862908010169	HMMPfam hit to PF01084, Ribosomal protein S18, score 1.5e-05
862908010170	HMMPfam hit to PF01250, Ribosomal protein S6, score 5e-07
862908010171	ATP-dependent protease La (LON) domain; Region: LON; pfam02190
862908010172	HMMPfam hit to PF02190, Peptidase S16, lon N-terminal, score 0.0021
862908010173	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
862908010174	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cl17355
862908010175	DNA binding site [nucleotide binding]
862908010176	ribonuclease G; Provisional; Region: PRK11712
862908010177	S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and...; Region: S1_RNase_E; cd04453
862908010178	homodimer interface [polypeptide binding]; other site
862908010179	oligonucleotide binding site [chemical binding]; other site
862908010180	Nucleoside permease [Nucleotide transport and metabolism]; Region: NupC; COG1972
862908010181	Na+ dependent nucleoside transporter N-terminus; Region: Nucleos_tra2_N; pfam01773
862908010182	Nucleoside recognition; Region: Gate; pfam07670
862908010183	Na+ dependent nucleoside transporter C-terminus; Region: Nucleos_tra2_C; pfam07662
862908010184	HMMPfam hit to PF07662, , score 4.9e-110
862908010185	9 probable transmembrane helices predicted for BMS2717 by TMHMM2.0 at aa 4-21, 28-47, 90-112, 167-189, 193-215, 259-281, 296-318, 351-373 and 388-405
862908010186	HMMPfam hit to PF07670, , score 2.9e-16
862908010187	HMMPfam hit to PF01773, Na+ dependent nucleoside transporter, score 2.5e-27
862908010188	Signal peptide predicted for BMS2717 by SignalP 2.0 HMM (Signal peptide probability 0.969) with cleavage site probability 0.779 between residues 21 and 22
862908010189	3 probable transmembrane helices predicted for BMS2718 by TMHMM2.0 at aa 9-26, 41-60 and 72-89
862908010190	Signal peptide predicted for BMS2718 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 26 and 27
862908010191	pyrimidine-nucleoside phosphorylase; Region: Y_phosphoryl; TIGR02644
862908010192	Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885
862908010193	Glycosyl transferase family, a/b domain; Region: Glycos_transf_3; pfam00591
862908010194	Pyrimidine nucleoside phosphorylase C-terminal domain; Region: PYNP_C; pfam07831
862908010195	HMMPfam hit to PF02885, Glycosyl transferase, family 3, score 3.1e-18
862908010196	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010197	HMMPfam hit to PF00591, Glycosyl transferase, family 3, score 3.2e-45
862908010198	purine nucleoside phosphorylase; Provisional; Region: PRK08202
862908010199	HMMPfam hit to PF00896, Purine phosphorylase, family 2, score 1.3e-92
862908010200	DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127
862908010201	active site
862908010202	catalytic site [active]
862908010203	substrate binding site [chemical binding]; other site
862908010204	HMMPfam hit to PF00929, Exonuclease, score 2.3e-43
862908010205	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908010206	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908010207	phosphorylation site [posttranslational modification]
862908010208	dimer interface [polypeptide binding]; other site
862908010209	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 1.8e-11
862908010210	exodeoxyribonuclease VII large subunit; Reviewed; Region: xseA; PRK00286
862908010211	ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a...; Region: ExoVII_LU_OBF; cd04489
862908010212	generic binding surface II; other site
862908010213	generic binding surface I; other site
862908010214	HMMPfam hit to PF02601, Exonuclease VII, large subunit, score 3e-31
862908010215	HMMPfam hit to PF01336, OB-fold nucleic acid binding, score 9.6e-10
862908010216	C-terminal processing peptidase family S41; Region: Peptidase_S41; cl02526
862908010217	C-terminal peptidase (prc); Region: prc; TIGR00225
862908010218	PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for...; Region: PDZ_CTP_protease; cd00988
862908010219	protein binding site [polypeptide binding]; other site
862908010220	C-terminal processing peptidase; serine protease family S41; Region: Peptidase_S41_CPP; cd07560
862908010221	Catalytic dyad [active]
862908010222	HMMPfam hit to PF03572, Peptidase S41, score 2.3e-67
862908010223	HMMPfam hit to PF00595, PDZ/DHR/GLGF, score 8.8e-12
862908010224	Signal peptide predicted for BMS2724 by SignalP 2.0 HMM (Signal peptide probability 0.908) with cleavage site probability 0.648 between residues 35 and 36
862908010225	1 probable transmembrane helix predicted for BMS2724 by TMHMM2.0 at aa 7-29
862908010226	Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]; Region: NlpD; COG0739
862908010227	Peptidase family M23; Region: Peptidase_M23; pfam01551
862908010228	HMMPfam hit to PF01551, Peptidase M23B, score 7.8e-13
862908010229	Signal peptide predicted for BMS2725 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 between residues 23 and 24
862908010230	3 probable transmembrane helices predicted for BMS2726 by TMHMM2.0 at aa 148-170, 190-212 and 217-234
862908010231	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908010232	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
862908010233	Walker A/P-loop; other site
862908010234	ATP binding site [chemical binding]; other site
862908010235	Q-loop/lid; other site
862908010236	ABC transporter signature motif; other site
862908010237	Walker B; other site
862908010238	D-loop; other site
862908010239	H-loop/switch region; other site
862908010240	HMMPfam hit to PF00005, ABC transporter, score 2.1e-41
862908010241	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010242	HD superfamily phosphohydrolases [General function prediction only]; Region: COG1078
862908010243	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
862908010244	Zn2+ binding site [ion binding]; other site
862908010245	Mg2+ binding site [ion binding]; other site
862908010246	Domain present in phytochromes and cGMP-specific phosphodiesterases; Region: GAF; smart00065
862908010247	FOG: GAF domain [Signal transduction mechanisms]; Region: FhlA; COG2203
862908010248	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]; Region: PspF; COG1221
862908010249	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908010250	Walker A motif; other site
862908010251	ATP binding site [chemical binding]; other site
862908010252	Walker B motif; other site
862908010253	arginine finger; other site
862908010254	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
862908010255	HMMPfam hit to PF02954, Helix-turn-helix, Fis-type, score 8.2e-12
862908010256	HMMPfam hit to PF00158, Sigma-54 factor, interaction region, score 1.2e-71
862908010257	HMMPfam hit to PF01590, GAF, score 6e-05
862908010258	tol-pal system beta propeller repeat protein TolB; Region: propeller_TolB; TIGR02800
862908010259	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
862908010260	WD40-like Beta Propeller Repeat; Region: PD40; pfam07676
862908010261	HMMPfam hit to PF07676, , score 1.9e-05
862908010262	HMMPfam hit to PF07676, , score 5.1e-05
862908010263	HMMPfam hit to PF07676, , score 0.036
862908010264	HMMPfam hit to PF07676, , score 1
862908010265	Signal peptide predicted for BMS2732 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.943 between residues 18 and 19
862908010266	Gram-negative bacterial tonB protein; Region: TonB; cl10048
862908010267	1 probable transmembrane helix predicted for BMS2733 by TMHMM2.0 at aa 13-32
862908010268	Biopolymer transport protein [Intracellular trafficking and secretion]; Region: ExbD; COG0848
862908010269	TolR protein; Region: tolR; TIGR02801
862908010270	HMMPfam hit to PF02472, Biopolymer transport protein ExbD/TolR, score 3.9e-18
862908010271	1 probable transmembrane helix predicted for BMS2734 by TMHMM2.0 at aa 20-42
862908010272	MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568
862908010273	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel, score 5.1e-37
862908010274	3 probable transmembrane helices predicted for BMS2735 by TMHMM2.0 at aa 15-37, 135-157 and 177-199
862908010275	8 probable transmembrane helices predicted for BMS2736 by TMHMM2.0 at aa 13-35, 59-81, 102-124, 134-155, 167-186, 190-208, 215-237 and 252-269
862908010276	PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature.
862908010277	Signal peptide predicted for BMS2737 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.729 between residues 18 and 19
862908010278	fructose-bisphosphate aldolase; Region: PLN02858
862908010279	Signal peptide predicted for BMS2738 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.778 between residues 21 and 22
862908010280	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908010281	TPR motif; other site
862908010282	Tetratricopeptide repeat; Region: TPR_12; pfam13424
862908010283	binding surface
862908010284	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
862908010285	HMMPfam hit to PF07719, , score 0.024; PF07719, Tetratricopeptide repeat
862908010286	HMMPfam hit to PF07719, , score 2; PF07719, Tetratricopeptide repeat
862908010287	1 probable transmembrane helix predicted for BMS2739 by TMHMM2.0 at aa 7-29
862908010288	Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_N_C; cd07023
862908010289	signal peptide peptidase SppA, 36K type; Region: SppA_dom; TIGR00706
862908010290	tandem repeat interface [polypeptide binding]; other site
862908010291	oligomer interface [polypeptide binding]; other site
862908010292	active site residues [active]
862908010293	HMMPfam hit to PF01343, Peptidase S49, score 1.7e-39
862908010294	1 probable transmembrane helix predicted for BMS2740 by TMHMM2.0 at aa 55-77
862908010295	Signal peptide predicted for BMS2741 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.527 between residues 19 and 20
862908010296	Predicted Fe-S-cluster redox enzyme [General function prediction only]; Region: COG0820
862908010297	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908010298	FeS/SAM binding site; other site
862908010299	HMMPfam hit to PF04055, Radical SAM, score 1.6e-10
862908010300	PS00190 Cytochrome c family heme-binding site signature.
862908010301	Ycf27; Reviewed; Region: orf27; CHL00148
862908010302	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908010303	active site
862908010304	phosphorylation site [posttranslational modification]
862908010305	intermolecular recognition site; other site
862908010306	dimerization interface [polypeptide binding]; other site
862908010307	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
862908010308	DNA binding site [nucleotide binding]
862908010309	HMMPfam hit to PF00486, Transcriptional regulatory protein, C-terminal, score 2.8e-14
862908010310	HMMPfam hit to PF00072, Response regulator receiver, score 6e-26
862908010311	Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490
862908010312	putative catalytic site [active]
862908010313	putative metal binding site [ion binding]; other site
862908010314	putative phosphate binding site [ion binding]; other site
862908010315	1 probable transmembrane helix predicted for BMS2744 by TMHMM2.0 at aa 13-32
862908010316	HMMPfam hit to PF03372, Endonuclease/exonuclease/phosphatase, score 3.4e-11
862908010317	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010318	HMMPfam hit to PF00072, Response regulator receiver, score 0.0011
862908010319	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
862908010320	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
862908010321	active site
862908010322	HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, N-terminal, score 1.2e-39
862908010323	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, central region, score 7.2e-49
862908010324	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal, score 4.4e-64
862908010325	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908010326	PS00073 Acyl-CoA dehydrogenases signature 2.
862908010327	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
862908010328	HMMPfam hit to PF00588, tRNA/rRNA methyltransferase (SpoU), score 1.7e-20
862908010329	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
862908010330	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
862908010331	active site
862908010332	HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, N-terminal, score 7.9e-07
862908010333	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, central region, score 3.7e-50
862908010334	PS00072 Acyl-CoA dehydrogenases signature 1.
862908010335	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal, score 1.3e-75
862908010336	PS00073 Acyl-CoA dehydrogenases signature 2.
862908010337	glucose-6-phosphate isomerase; Provisional; Region: PRK00973
862908010338	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_1; cd05015
862908010339	active site
862908010340	dimer interface [polypeptide binding]; other site
862908010341	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_2; cd05016
862908010342	dimer interface [polypeptide binding]; other site
862908010343	active site
862908010344	HMMPfam hit to PF00342, Phosphoglucose isomerase (PGI), score 2.1e-28
862908010345	PS00765 Phosphoglucose isomerase signature 1.
862908010346	FOG: FHA domain [Signal transduction mechanisms]; Region: COG1716
862908010347	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
862908010348	phosphopeptide binding site; other site
862908010349	c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]; Region: COG2199
862908010350	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
862908010351	metal binding site [ion binding]; metal-binding site
862908010352	active site
862908010353	I-site; other site
862908010354	HMMPfam hit to PF00498, Forkhead-associated, score 2.9e-13
862908010355	HMMPfam hit to PF00990, GGDEF, score 1.9e-50
862908010356	DNA mismatch repair protein; Reviewed; Region: mutL; PRK00095
862908010357	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908010358	ATP binding site [chemical binding]; other site
862908010359	Mg2+ binding site [ion binding]; other site
862908010360	G-X-G motif; other site
862908010361	MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is...; Region: MutL_Trans; cd00782
862908010362	ATP binding site [chemical binding]; other site
862908010363	MutL C terminal dimerisation domain; Region: MutL_C; cl07336
862908010364	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 0.0042
862908010365	PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature.
862908010366	HMMPfam hit to PF01119, DNA mismatch repair protein, score 8.4e-06
862908010367	tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]; Region: MiaA; COG0324
862908010368	tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed; Region: miaA; PRK00091
862908010369	Signal peptide predicted for BMS2755 by SignalP 2.0 HMM (Signal peptide probability 0.890) with cleavage site probability 0.548 between residues 29 and 30
862908010370	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010371	HMMPfam hit to PF01715, tRNA isopentenyltransferase, score 7e-50
862908010372	PEP synthetase regulatory protein; Provisional; Region: PRK05339
862908010373	HMMPfam hit to PF03618, Protein of unknown function DUF299, score 2.1e-90
862908010374	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010375	PRC-barrel domain; Region: PRC; pfam05239
862908010376	MgtE intracellular N domain; Region: MgtE_N; smart00924
862908010377	FOG: CBS domain [General function prediction only]; Region: COG0517
862908010378	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE.  MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other...; Region: CBS_pair_Mg_transporter; cd04606
862908010379	HMMPfam hit to PF05239, PRC-barrel, score 4.7e-05
862908010380	HMMPfam hit to PF03448, MgtE intracellular region, score 4.4e-21
862908010381	HMMPfam hit to PF00571, CBS, score 0.0019
862908010382	HMMPfam hit to PF00571, CBS, score 9.3e-09
862908010383	Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]; Region: MntH; COG1914
862908010384	Natural resistance-associated macrophage protein; Region: Nramp; pfam01566
862908010385	11 probable transmembrane helices predicted for BMS2758 by TMHMM2.0 at aa 12-31, 46-68, 97-119, 124-143, 155-177, 197-216, 237-259, 286-308, 329-351, 356-378 and 391-413
862908010386	HMMPfam hit to PF01566, Natural resistance-associated macrophage protein, score 9.2e-08
862908010387	Serine/Threonine protein kinases, catalytic domain; Region: S_TKc; smart00220
862908010388	Catalytic domain of Protein Kinases; Region: PKc; cd00180
862908010389	active site
862908010390	ATP binding site [chemical binding]; other site
862908010391	substrate binding site [chemical binding]; other site
862908010392	activation loop (A-loop); other site
862908010393	HMMPfam hit to PF00069, Protein kinase, score 2.5e-33
862908010394	PS00109 Tyrosine protein kinases specific active-site signature.
862908010395	Signal peptide predicted for BMS2760 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.397 between residues 19 and 20
862908010396	Lysophospholipase [Lipid metabolism]; Region: PldB; COG2267
862908010397	Putative lysophospholipase; Region: Hydrolase_4; pfam12146
862908010398	Domain of unknown function (DUF4339); Region: DUF4339; pfam14237
862908010399	Domain of unknown function (DUF4339); Region: DUF4339; pfam14237
862908010400	PilZ domain; Region: PilZ; pfam07238
862908010401	Signal peptide predicted for BMS2763 by SignalP 2.0 HMM (Signal peptide probability 0.964) with cleavage site probability 0.561 between residues 23 and 24
862908010402	PS00063 Aldo/keto reductase family putative active site signature.
862908010403	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
862908010404	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
862908010405	ligand binding site [chemical binding]; other site
862908010406	flexible hinge region; other site
862908010407	HMMPfam hit to PF00027, Cyclic nucleotide-binding, score 2.9e-16
862908010408	putative acyltransferase; Provisional; Region: PRK05790
862908010409	Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and...; Region: thiolase; cd00751
862908010410	dimer interface [polypeptide binding]; other site
862908010411	active site
862908010412	HMMPfam hit to PF02803, Thiolase, score 1.3e-50
862908010413	PS00099 Thiolases active site.
862908010414	PS00737 Thiolases signature 2.
862908010415	HMMPfam hit to PF00108, Thiolase, score 2.4e-128
862908010416	PS00098 Thiolases acyl-enzyme intermediate signature.
862908010417	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
862908010418	Coenzyme A binding pocket [chemical binding]; other site
862908010419	HMMPfam hit to PF00583, GCN5-related N-acetyltransferase, score 1.8e-18
862908010420	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
862908010421	Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases; Region: SCAD_SBCAD; cd01158
862908010422	FAD binding site [chemical binding]; other site
862908010423	homotetramer interface [polypeptide binding]; other site
862908010424	substrate binding pocket [chemical binding]; other site
862908010425	catalytic base [active]
862908010426	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal, score 1.1e-76
862908010427	PS00073 Acyl-CoA dehydrogenases signature 2.
862908010428	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, central region, score 3.3e-41
862908010429	PS00072 Acyl-CoA dehydrogenases signature 1.
862908010430	HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, N-terminal, score 2e-47
862908010431	3-hydroxybutyryl-CoA dehydratase; Validated; Region: PRK05809
862908010432	Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase; Region: crotonase-like; cd06558
862908010433	substrate binding site [chemical binding]; other site
862908010434	oxyanion hole (OAH) forming residues; other site
862908010435	trimer interface [polypeptide binding]; other site
862908010436	HMMPfam hit to PF00378, Enoyl-CoA hydratase/isomerase, score 9.5e-65
862908010437	PS00166 Enoyl-CoA hydratase/isomerase signature.
862908010438	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908010439	3-hydroxybutyryl-CoA dehydrogenase; Validated; Region: PRK05808
862908010440	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
862908010441	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Region: 3HCDH; pfam00725
862908010442	HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, score 4e-50
862908010443	HMMPfam hit to PF02737, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding, score 9e-84
862908010444	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010445	30S ribosomal protein S20; Reviewed; Region: rpsT; PRK00239
862908010446	HMMPfam hit to PF01649, Ribosomal protein S20, score 4.7e-23
862908010447	DNA polymerase III, delta subunit [DNA replication, recombination, and repair]; Region: HolA; COG1466
862908010448	Lipopolysaccharide-assembly; Region: LptE; cl01125
862908010449	Signal peptide predicted for BMS2775 by SignalP 2.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.681 between residues 21 and 22
862908010450	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908010451	Protein of unknown function (DUF721); Region: DUF721; pfam05258
862908010452	Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490
862908010453	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173
862908010454	PS00092 N-6 Adenine-specific DNA methylases signature.
862908010455	Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]; Region: SUA5; COG0009
862908010456	HMMPfam hit to PF01300, SUA5/yciO/yrdC, N-terminal, score 3.5e-09
862908010457	1 probable transmembrane helix predicted for BMS2780 by TMHMM2.0 at aa 302-324
862908010458	ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2C; COG1463
862908010459	mce related protein; Region: MCE; pfam02470
862908010460	HMMPfam hit to PF02470, Mce4/Rv3499c/MTV023.06c protein, score 1.7e-09
862908010461	Signal peptide predicted for BMS2781 by SignalP 2.0 HMM (Signal peptide probability 0.708) with cleavage site probability 0.216 between residues 20 and 21
862908010462	ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2A; COG1127
862908010463	ATP-binding cassette transport system involved in resistant to organic solvents; Region: ABC_Org_Solvent_Resistant; cd03261
862908010464	Walker A/P-loop; other site
862908010465	ATP binding site [chemical binding]; other site
862908010466	Q-loop/lid; other site
862908010467	ABC transporter signature motif; other site
862908010468	Walker B; other site
862908010469	D-loop; other site
862908010470	H-loop/switch region; other site
862908010471	HMMPfam hit to PF00005, ABC transporter, score 7.8e-49
862908010472	PS00211 ABC transporters family signature.
862908010473	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010474	ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2B; COG0767
862908010475	Permease; Region: Permease; pfam02405
862908010476	7 probable transmembrane helices predicted for BMS2783 by TMHMM2.0 at aa 12-34, 49-67, 87-109, 119-141, 190-212, 232-254 and 267-289
862908010477	HMMPfam hit to PF02405, Protein of unknown function DUF140, score 6.6e-82
862908010478	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
862908010479	FOG: FHA domain [Signal transduction mechanisms]; Region: COG1716
862908010480	phosphopeptide binding site; other site
862908010481	HMMPfam hit to PF00498, Forkhead-associated, score 2.5e-10
862908010482	Alanine racemase [Cell envelope biogenesis, outer membrane]; Region: Alr; COG0787
862908010483	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes; Region: PLPDE_III; cl00261
862908010484	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
862908010485	catalytic residue [active]
862908010486	HMMPfam hit to PF00842, Alanine racemase, C-terminal, score 6.9e-12
862908010487	HMMPfam hit to PF01168, Alanine racemase, N-terminal, score 9.9e-31
862908010488	Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis...; Region: SK; cd00464
862908010489	ADP binding site [chemical binding]; other site
862908010490	magnesium binding site [ion binding]; other site
862908010491	putative shikimate binding site; other site
862908010492	HMMPfam hit to PF01202, Shikimate kinase, score 2.8e-20
862908010493	PS01128 Shikimate kinase signature.
862908010494	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010495	Uncharacterized ACR, COG1399; Region: DUF177; pfam02620
862908010496	50S ribosomal protein L32; Validated; Region: rpmF; PRK01110
862908010497	HMMPfam hit to PF01783, Ribosomal L32p protein, score 2.1e-07
862908010498	3-oxoacyl-(acyl carrier protein) synthase III; Reviewed; Region: PRK09352
862908010499	Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl...; Region: KAS_III; cd00830
862908010500	dimer interface [polypeptide binding]; other site
862908010501	active site
862908010502	CoA binding pocket [chemical binding]; other site
862908010503	(acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]; Region: FabD; COG0331
862908010504	malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128
862908010505	HMMPfam hit to PF00698, Acyl transferase region, score 5.5e-11
862908010506	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908010507	3-oxoacyl-(acyl-carrier-protein) reductase; Region: 3oxo_ACP_reduc; TIGR01830
862908010508	NAD(P) binding site [chemical binding]; other site
862908010509	active site
862908010510	HMMPfam hit to PF00106, Short-chain dehydrogenase/reductase SDR, score 1.3e-84
862908010511	PS00061 Short-chain dehydrogenases/reductases family signature.
862908010512	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
862908010513	acyl carrier protein; Provisional; Region: acpP; PRK00982
862908010514	HMMPfam hit to PF00550, Phosphopantetheine-binding, score 3e-15
862908010515	beta-ketoacyl-acyl-carrier-protein synthase II; Region: fabF; TIGR03150
862908010516	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
862908010517	dimer interface [polypeptide binding]; other site
862908010518	active site
862908010519	HMMPfam hit to PF00109, Beta-ketoacyl synthase, score 8.4e-65
862908010520	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010521	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908010522	PS00606 Beta-ketoacyl synthases active site.
862908010523	HMMPfam hit to PF02801, Beta-ketoacyl synthase, score 2.4e-75
862908010524	serine hydroxymethyltransferase; Reviewed; Region: glyA; PRK00011
862908010525	Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl...; Region: SHMT; cd00378
862908010526	dimer interface [polypeptide binding]; other site
862908010527	active site
862908010528	glycine-pyridoxal phosphate binding site [chemical binding]; other site
862908010529	folate binding site [chemical binding]; other site
862908010530	HMMPfam hit to PF00464, Glycine hydroxymethyltransferase, score 6.4e-252
862908010531	PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site.
862908010532	Glutamate synthase domain 2 [Amino acid transport and metabolism]; Region: GltB; COG0069
862908010533	Glutamate synthase (GltS) FMN-binding domain.  GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast...; Region: GltS_FMN; cd02808
862908010534	active site
862908010535	FMN binding site [chemical binding]; other site
862908010536	substrate binding site [chemical binding]; other site
862908010537	3Fe-4S cluster binding site [ion binding]; other site
862908010538	HMMPfam hit to PF01645, Ferredoxin-dependent glutamate synthase, score 4.3e-82
862908010539	1 probable transmembrane helix predicted for BMS2796 by TMHMM2.0 at aa 5-27
862908010540	L,D-transpeptidase catalytic domain; Region: YkuD_2; pfam13645
862908010541	Signal peptide predicted for BMS2797 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.999 between residues 17 and 18
862908010542	transcriptional regulator NrdR; Validated; Region: nrdR; PRK00464
862908010543	ATP cone domain; Region: ATP-cone; pfam03477
862908010544	HMMPfam hit to PF03477, ATP-cone, score 3.4e-24
862908010545	transcription antitermination factor NusB; Region: nusB; TIGR01951
862908010546	putative RNA binding site [nucleotide binding]; other site
862908010547	HMMPfam hit to PF01029, Antitermination protein NusB, score 1.3e-17
862908010548	Signal peptide predicted for BMS2801 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.987 between residues 18 and 19
862908010549	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908010550	S-adenosylmethionine binding site [chemical binding]; other site
862908010551	This hit extended beyond the end of the feature by 1 aa and was clipped.; PS00294 Prenyl group binding site (CAAX box).
862908010552	Uncharacterized conserved protein, YhbC family [Function unknown]; Region: COG0782
862908010553	Transcription elongation factor, N-terminal; Region: GreA_GreB_N; pfam03449
862908010554	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
862908010555	HMMPfam hit to PF01272, Prokaryotic transcription elongation factor GreA/GreB, score 8.3e-26
862908010556	HMMPfam hit to PF03449, Prokaryotic transcription elongation factor GreA/GreB, score 3e-24
862908010557	Protein-tyrosine-phosphatase [Signal transduction mechanisms]; Region: Wzb; COG0394
862908010558	Low molecular weight phosphatase family; Region: LMWPc; cd00115
862908010559	active site
862908010560	HMMPfam hit to PF01451, Low molecular weight phosphotyrosine protein phosphatase, score 1.7e-40
862908010561	Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II)...; Region: Pep_deformylase; cd00487
862908010562	active site
862908010563	catalytic residues [active]
862908010564	metal binding site [ion binding]; metal-binding site
862908010565	HMMPfam hit to PF01327, Formylmethionine deformylase, score 5e-39
862908010566	1 probable transmembrane helix predicted for BMS2807 by TMHMM2.0 at aa 7-29
862908010567	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cd00138
862908010568	putative active site [active]
862908010569	catalytic site [active]
862908010570	PLD-like domain; Region: PLDc_2; pfam13091
862908010571	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
862908010572	putative active site [active]
862908010573	catalytic site [active]
862908010574	Signal peptide predicted for BMS2808 by SignalP 2.0 HMM (Signal peptide probability 0.946) with cleavage site probability 0.934 between residues 16 and 17
862908010575	Signal peptide predicted for BMS2809 by SignalP 2.0 HMM (Signal peptide probability 0.829) with cleavage site probability 0.265 between residues 28 and 29
862908010576	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908010577	short chain dehydrogenase; Provisional; Region: PRK07024
862908010578	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908010579	NAD(P) binding site [chemical binding]; other site
862908010580	active site
862908010581	HMMPfam hit to PF00106, Short-chain dehydrogenase/reductase SDR, score 2.4e-38
862908010582	PS00061 Short-chain dehydrogenases/reductases family signature.
862908010583	Sulfite exporter TauE/SafE; Region: TauE; pfam01925
862908010584	Signal peptide predicted for BMS2811 by SignalP 2.0 HMM (Signal peptide probability 0.951) with cleavage site probability 0.625 between residues 60 and 61
862908010585	HMMPfam hit to PF01925, Protein of unknown function DUF81, score 1.8e-23
862908010586	1 probable transmembrane helix predicted for BMS2813 by TMHMM2.0 at aa 387-409
862908010587	Bacterial transcription activator, effector binding domain; Region: AraC_E_bind; smart00871
862908010588	HMMPfam hit to PF06445, Bacterial transcription activator, effector binding, score 9.4e-09
862908010589	Uncharacterized BCR, YaiI/YqxD family COG1671; Region: DUF188; pfam02639
862908010590	HMMPfam hit to PF02639, Protein of unknown function DUF188, score 6.5e-59
862908010591	10 probable transmembrane helices predicted for BMS2818 by TMHMM2.0 at aa 3-17, 27-49, 56-77, 97-119, 159-181, 196-218, 238-260, 275-294, 315-337 and 365-387
862908010592	Flavodoxin-like fold; Region: Flavodoxin_2; cl00438
862908010593	HMMPfam hit to PF02525, NAD(P)H dehydrogenase (quinone), score 6.1e-32
862908010594	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
862908010595	Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440
862908010596	WHG domain; Region: WHG; pfam13305
862908010597	HMMPfam hit to PF00440, Bacterial regulatory protein, TetR, score 1.3e-09
862908010598	Microcin C7 self-immunity protein determines resistance to exogenous microcin C7; Region: Peptidase_S66_mccF_like; cd07062
862908010599	putative dimer interface [polypeptide binding]; other site
862908010600	catalytic triad [active]
862908010601	HMMPfam hit to PF02016, Peptidase U61, LD-carboxypeptidase A, score 2e-30
862908010602	alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins; Region: alpha-crystallin-Hsps_p23-like; cl00175
862908010603	Signal peptide predicted for BMS2822 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.969 between residues 34 and 35
862908010604	Transcriptional regulator [Transcription]; Region: LysR; COG0583
862908010605	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908010606	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_3; cd08472
862908010607	putative effector binding pocket; other site
862908010608	putative dimerization interface [polypeptide binding]; other site
862908010609	HMMPfam hit to PF03466, LysR, substrate-binding, score 5e-29
862908010610	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 2.3e-16
862908010611	PS00044 Bacterial regulatory proteins, lysR family signature.
862908010612	3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557
862908010613	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908010614	NAD(P) binding site [chemical binding]; other site
862908010615	active site
862908010616	HMMPfam hit to PF00106, Short-chain dehydrogenase/reductase SDR, score 8.1e-48
862908010617	Signal peptide predicted for BMS2825 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.998 between residues 17 and 18
862908010618	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: CitB; COG2197
862908010619	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908010620	active site
862908010621	phosphorylation site [posttranslational modification]
862908010622	intermolecular recognition site; other site
862908010623	dimerization interface [polypeptide binding]; other site
862908010624	C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170
862908010625	DNA binding residues [nucleotide binding]
862908010626	dimerization interface [polypeptide binding]; other site
862908010627	HMMPfam hit to PF00072, Response regulator receiver, score 4.7e-22
862908010628	HMMPfam hit to PF00196, Bacterial regulatory protein, LuxR, score 3e-07
862908010629	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908010630	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
862908010631	dimerization interface [polypeptide binding]; other site
862908010632	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908010633	ATP binding site [chemical binding]; other site
862908010634	Mg2+ binding site [ion binding]; other site
862908010635	G-X-G motif; other site
862908010636	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 2.9e-15
862908010637	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 0.0079
862908010638	HMMPfam hit to PF00672, Histidine kinase, HAMP region, score 6.7e-07
862908010639	2 probable transmembrane helices predicted for BMS2827 by TMHMM2.0 at aa 10-29 and 311-333
862908010640	Signal peptide predicted for BMS2827 by SignalP 2.0 HMM (Signal peptide probability 0.852) with cleavage site probability 0.393 between residues 31 and 32
862908010641	Protein of unknown function (DUF3124); Region: DUF3124; pfam11322
862908010642	Methyladenine glycosylase; Region: Adenine_glyco; pfam03352
862908010643	HMMPfam hit to PF03352, Methyladenine glycosylase, score 1.1e-87
862908010644	Plastocyanin [Energy production and conversion]; Region: PetE; COG3794
862908010645	Cupredoxin-like domain; Region: Cupredoxin_1; cl17234
862908010646	HMMPfam hit to PF00127, Blue (type 1) copper domain, score 3.1e-06
862908010647	Signal peptide predicted for BMS2831 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.992 between residues 20 and 21
862908010648	catalase/hydroperoxidase HPI(I); Provisional; Region: PRK15061
862908010649	N-terminal catalytic domain of catalase-peroxidases; Region: catalase_peroxidase_1; cd00649
862908010650	dimer interface [polypeptide binding]; other site
862908010651	active site
862908010652	heme binding site [chemical binding]; other site
862908010653	C-terminal non-catalytic domain of catalase-peroxidases; Region: catalase_peroxidase_2; cd08200
862908010654	HMMPfam hit to PF00141, Haem peroxidase, plant/fungal/bacterial, score 2.6e-90
862908010655	HMMPfam hit to PF00141, Haem peroxidase, plant/fungal/bacterial, score 9.4e-83
862908010656	PS00435 Peroxidases proximal heme-ligand signature.
862908010657	PS00436 Peroxidases active site signature.
862908010658	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908010659	Signal peptide predicted for BMS2832 by SignalP 2.0 HMM (Signal peptide probability 0.954) with cleavage site probability 0.568 between residues 16 and 17
862908010660	Acyl-ACP thioesterase [Lipid metabolism]; Region: FatA; COG3884
862908010661	4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites; Region: 4HBT; cd00586
862908010662	active site
862908010663	The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated...; Region: hot_dog; cl00509
862908010664	active site 2 [active]
862908010665	active site 1 [active]
862908010666	HMMPfam hit to PF01643, Acyl-ACP thioesterase, score 1.1e-27
862908010667	C-terminal, alpha helical domain of the Glutathione S-transferase family; Region: GST_C_family; cd00299
862908010668	N-terminal domain interface [polypeptide binding]; other site
862908010669	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
862908010670	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
862908010671	substrate binding pocket [chemical binding]; other site
862908010672	membrane-bound complex binding site; other site
862908010673	hinge residues; other site
862908010674	Signal peptide predicted for BMS2835 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.807 between residues 20 and 21
862908010675	Signal peptide predicted for BMS2836 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.800 between residues 17 and 18
862908010676	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
862908010677	HMMPfam hit to PF00873, Acriflavin resistance protein, score 2.2e-181
862908010678	11 probable transmembrane helices predicted for BMS2837 by TMHMM2.0 at aa 10-32, 329-351, 356-373, 386-408, 428-450, 463-485, 525-547, 858-880, 895-917, 946-965 and 975-997
862908010679	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
862908010680	Signal peptide predicted for BMS2838 by SignalP 2.0 HMM (Signal peptide probability 0.868) with cleavage site probability 0.593 between residues 15 and 16
862908010681	type I secretion outer membrane protein, TolC family; Region: type_I_sec_TolC; TIGR01844
862908010682	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.9e-05
862908010683	HMMPfam hit to PF02321, Outer membrane efflux protein, score 3.6e-19
862908010684	Signal peptide predicted for BMS2839 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 between residues 23 and 24
862908010685	MarR family; Region: MarR_2; pfam12802
862908010686	HMMPfam hit to PF01047, Bacterial regulatory protein, MarR, score 5.2e-23
862908010687	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
862908010688	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
862908010689	substrate binding pocket [chemical binding]; other site
862908010690	membrane-bound complex binding site; other site
862908010691	hinge residues; other site
862908010692	Signal peptide predicted for BMS2841 by SignalP 2.0 HMM (Signal peptide probability 0.974) with cleavage site probability 0.970 between residues 32 and 33
862908010693	bicyclomycin/multidrug efflux system; Provisional; Region: PRK11102
862908010694	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
862908010695	putative substrate translocation pore; other site
862908010696	12 probable transmembrane helices predicted for BMS2842 by TMHMM2.0 at aa 9-31, 46-63, 76-93, 99-121, 133-155, 159-181, 213-235, 245-267, 274-296, 301-323, 336-358 and 363-385
862908010697	HMMPfam hit to PF07690, , score 9.7e-46
862908010698	Signal peptide predicted for BMS2842 by SignalP 2.0 HMM (Signal peptide probability 0.974) with cleavage site probability 0.420 between residues 32 and 33
862908010699	The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated...; Region: hot_dog; cl00509
862908010700	active site 2 [active]
862908010701	active site 1 [active]
862908010702	PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid...; Region: PAP2_like; cl00474
862908010703	active site
862908010704	Signal peptide predicted for BMS2845 by SignalP 2.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.953 between residues 23 and 24
862908010705	5 probable transmembrane helices predicted for BMS2845 by TMHMM2.0 at aa 2-20, 35-57, 78-100, 168-185 and 192-214
862908010706	HMMPfam hit to PF01569, Phosphoesterase, PA-phosphatase related, score 6.2e-14
862908010707	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908010708	Response regulator receiver domain; Region: Response_reg; pfam00072
862908010709	active site
862908010710	phosphorylation site [posttranslational modification]
862908010711	intermolecular recognition site; other site
862908010712	dimerization interface [polypeptide binding]; other site
862908010713	HMMPfam hit to PF00072, Response regulator receiver, score 4.9e-17
862908010714	Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]; Region: NtrB; COG3852
862908010715	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908010716	dimer interface [polypeptide binding]; other site
862908010717	phosphorylation site [posttranslational modification]
862908010718	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908010719	ATP binding site [chemical binding]; other site
862908010720	Mg2+ binding site [ion binding]; other site
862908010721	G-X-G motif; other site
862908010722	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 3.1e-27
862908010723	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 2.4e-05
862908010724	Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors; Region: STAS; cl00604
862908010725	Zinc ribbon domain; Region: CxxC_CxxC_SSSS; pfam09723
862908010726	Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]; Region: Tar; COG0840
862908010727	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
862908010728	dimerization interface [polypeptide binding]; other site
862908010729	Stage II sporulation protein E (SpoIIE); Region: SpoIIE; pfam07228
862908010730	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 0.00064
862908010731	HMMPfam hit to PF07228, Stage II sporulation E, score 4.2e-28
862908010732	HMMPfam hit to PF00672, Histidine kinase, HAMP region, score 2.2e-15
862908010733	2 probable transmembrane helices predicted for BMS2850 by TMHMM2.0 at aa 18-40 and 257-279
862908010734	Signal peptide predicted for BMS2850 by SignalP 2.0 HMM (Signal peptide probability 0.896) with cleavage site probability 0.427 between residues 42 and 43
862908010735	1 probable transmembrane helix predicted for BMS2851 by TMHMM2.0 at aa 9-27
862908010736	Signal peptide predicted for BMS2852 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.992 between residues 19 and 20
862908010737	Collagen triple helix repeat (20 copies); Region: Collagen; pfam01391
862908010738	HMMPfam hit to PF01391, Collagen triple helix repeat, score 8.4e-15
862908010739	HMMPfam hit to PF01391, Collagen triple helix repeat, score 2.7e-12
862908010740	HMMPfam hit to PF01391, Collagen triple helix repeat, score 1.8e-11
862908010741	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
862908010742	putative binding surface; other site
862908010743	active site
862908010744	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908010745	phosphorylation site [posttranslational modification]
862908010746	intermolecular recognition site; other site
862908010747	HMMPfam hit to PF01627, Hpt, score 1.2e-12
862908010748	HMMPfam hit to PF00072, Response regulator receiver, score 1.2e-06
862908010749	XdhC and CoxI family; Region: XdhC_CoxI; pfam02625
862908010750	xanthine dehydrogenase accessory protein XdhC; Region: xanthine_xdhC; TIGR02964
862908010751	XdhC Rossmann domain; Region: XdhC_C; pfam13478
862908010752	HMMPfam hit to PF02625, Protein of unknown function DUF182, score 1.6e-06
862908010753	xanthine dehydrogenase, molybdopterin binding subunit; Region: xanthine_xdhB; TIGR02965
862908010754	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; Region: Ald_Xan_dh_C; smart01008
862908010755	Molybdopterin-binding domain of aldehyde dehydrogenase; Region: Ald_Xan_dh_C2; pfam02738
862908010756	HMMPfam hit to PF02738, Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding, score 3.8e-219
862908010757	HMMPfam hit to PF01315, Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead, score 3.5e-24
862908010758	xanthine dehydrogenase, small subunit; Region: xanthine_xdhA; TIGR02963
862908010759	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
862908010760	catalytic loop [active]
862908010761	iron binding site [ion binding]; other site
862908010762	[2Fe-2S] binding domain; Region: Fer2_2; pfam01799
862908010763	CO dehydrogenase flavoprotein C-terminal domain; Region: CO_deh_flav_C; pfam03450
862908010764	HMMPfam hit to PF03450, CO dehydrogenase flavoprotein, C-terminal, score 1.5e-14
862908010765	HMMPfam hit to PF00941, Molybdopterin dehydrogenase, FAD-binding, score 4.2e-25
862908010766	HMMPfam hit to PF01799, [2Fe-2S]-binding, score 3.8e-28
862908010767	HMMPfam hit to PF00111, Ferredoxin, score 0.0026
862908010768	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
862908010769	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
862908010770	Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi); Region: PseudoU_synth; cl00130
862908010771	active site
862908010772	HMMPfam hit to PF00849, Pseudouridine synthase, score 8.6e-34
862908010773	Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490
862908010774	putative catalytic site [active]
862908010775	putative phosphate binding site [ion binding]; other site
862908010776	putative metal binding site [ion binding]; other site
862908010777	Signal peptide predicted for BMS2859 by SignalP 2.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.969 between residues 24 and 25
862908010778	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
862908010779	Signal peptide predicted for BMS2860 by SignalP 2.0 HMM (Signal peptide probability 0.917) with cleavage site probability 0.847 between residues 18 and 19
862908010780	Signal peptide predicted for BMS2861 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.983 between residues 20 and 21
862908010781	PS00141 Eukaryotic and viral aspartyl proteases active site.
862908010782	3 probable transmembrane helices predicted for BMS2862 by TMHMM2.0 at aa 21-43, 978-1000 and 1007-1029
862908010783	Long-chain-fatty-acid--CoA ligase; Validated; Region: PRK07059
862908010784	Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD; Region: FC-FACS_FadD_like; cd05936
862908010785	acyl-activating enzyme (AAE) consensus motif; other site
862908010786	putative AMP binding site [chemical binding]; other site
862908010787	putative active site [active]
862908010788	putative CoA binding site [chemical binding]; other site
862908010789	HMMPfam hit to PF00501, AMP-dependent synthetase and ligase, score 1.5e-127
862908010790	PS00455 Putative AMP-binding domain signature.
862908010791	PS00211 ABC transporters family signature.
862908010792	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010793	The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1; Region: GIY-YIG_UPF0213; cd10456
862908010794	GIY-YIG motif/motif A; other site
862908010795	putative active site [active]
862908010796	putative metal binding site [ion binding]; other site
862908010797	HMMPfam hit to PF01541, Excinuclease ABC, C subunit, N-terminal, score 2.8e-16
862908010798	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908010799	dimer interface [polypeptide binding]; other site
862908010800	phosphorylation site [posttranslational modification]
862908010801	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908010802	ATP binding site [chemical binding]; other site
862908010803	Mg2+ binding site [ion binding]; other site
862908010804	G-X-G motif; other site
862908010805	Response regulator receiver domain; Region: Response_reg; pfam00072
862908010806	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908010807	active site
862908010808	phosphorylation site [posttranslational modification]
862908010809	intermolecular recognition site; other site
862908010810	dimerization interface [polypeptide binding]; other site
862908010811	HMMPfam hit to PF00072, Response regulator receiver, score 5.9e-22
862908010812	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 7.2e-40
862908010813	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 1.9e-24
862908010814	2 probable transmembrane helices predicted for BMS2866 by TMHMM2.0 at aa 10-28 and 182-204
862908010815	Signal peptide predicted for BMS2866 by SignalP 2.0 HMM (Signal peptide probability 0.957) with cleavage site probability 0.439 between residues 23 and 24
862908010816	Signal peptide predicted for BMS2867 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.857 between residues 24 and 25
862908010817	Signal peptide predicted for BMS2868 by SignalP 2.0 HMM (Signal peptide probability 0.982) with cleavage site probability 0.574 between residues 22 and 23
862908010818	Signal peptide predicted for BMS2869 by SignalP 2.0 HMM (Signal peptide probability 0.871) with cleavage site probability 0.497 between residues 18 and 19
862908010819	Alpha-Mannosidase Binding Domain of Atg19/34; Region: ABD; cl15429
862908010820	Phosphomannose isomerase [Carbohydrate transport and metabolism]; Region: ManA; COG1482
862908010821	HMMPfam hit to PF01238, Mannose-6-phosphate isomerase, type I, score 1.7e-07
862908010822	ATP-dependent protease La (LON) domain; Region: LON; pfam02190
862908010823	Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes.  All members...; Region: cytidine_deaminase-like; cl00269
862908010824	HMMPfam hit to PF02190, Peptidase S16, lon N-terminal, score 4.8e-05
862908010825	Dolichol kinase [Lipid metabolism]; Region: SEC59; COG0170
862908010826	6 probable transmembrane helices predicted for BMS2872 by TMHMM2.0 at aa 36-58, 79-97, 101-123, 136-155, 160-182 and 189-206
862908010827	HMMPfam hit to PF01148, Phosphatidate cytidylyltransferase, score 5e-07
862908010828	Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]; Region: flhG; COG0455
862908010829	FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by...; Region: FleN-like; cd02038
862908010830	P-loop; other site
862908010831	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010832	DnaJ domain; Region: DnaJ; pfam00226
862908010833	HSP70 interaction site [polypeptide binding]; other site
862908010834	Helix-turn-helix domain; Region: HTH_25; pfam13413
862908010835	HMMPfam hit to PF00226, Heat shock protein DnaJ, N-terminal, score 1.8e-06
862908010836	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
862908010837	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
862908010838	active site
862908010839	HMMPfam hit to PF00849, Pseudouridine synthase, score 1.2e-57
862908010840	PS01129 Rlu family of pseudouridine synthase signature.
862908010841	Multi-copper polyphenol oxidoreductase laccase; Region: Cu-oxidase_4; pfam02578
862908010842	HMMPfam hit to PF02578, Protein of unknown function DUF152, score 1.1e-12
862908010843	Vitamin K epoxide reductase family in bacteria; Region: VKOR_3; cd12920
862908010844	putative active site [active]
862908010845	redox center [active]
862908010846	Thioredoxin; Region: Thioredoxin_4; cl17273
862908010847	DSBA-like thioredoxin domain; Region: DSBA; pfam01323
862908010848	5 probable transmembrane helices predicted for BMS2877 by TMHMM2.0 at aa 21-43, 82-104, 116-138, 143-157 and 164-186
862908010849	HMMPfam hit to PF01323, DSBA oxidoreductase, score 1.4e-05
862908010850	TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310
862908010851	Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]; Region: COG1099
862908010852	active site
862908010853	HMMPfam hit to PF01026, TatD-related deoxyribonuclease, score 7.6e-97
862908010854	PS01090 Uncharacterized protein family UPF0006 signature 2.
862908010855	This hit extended beyond the end of the feature by 1 aa and was clipped.; PS00294 Prenyl group binding site (CAAX box).
862908010856	Glycosyl hydrolase family 14; Region: Glyco_hydro_14; cl03185
862908010857	Signal peptide predicted for BMS2879 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.909 between residues 22 and 23
862908010858	HMMPfam hit to PF01373, Glycoside hydrolase, family 14, score 5.9e-25
862908010859	Signal peptide predicted for BMS2881 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.737 between residues 19 and 20
862908010860	PGAP1-like protein; Region: PGAP1; pfam07819
862908010861	Alpha/beta hydrolase family; Region: Abhydrolase_5; pfam12695
862908010862	PS00120 Lipases, serine active site.
862908010863	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Region: Gp_dh_N; smart00846
862908010864	glyceraldehyde-3-phosphate dehydrogenase, type I; Region: GAPDH-I; TIGR01534
862908010865	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; pfam02800
862908010866	HMMPfam hit to PF00044, Glyceraldehyde 3-phosphate dehydrogenase, score 2.1e-67
862908010867	PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site.
862908010868	HMMPfam hit to PF02800, Glyceraldehyde 3-phosphate dehydrogenase, score 6.4e-107
862908010869	phosphoglycerate kinase; Provisional; Region: pgk; PRK00073
862908010870	Phosphoglycerate kinase; Region: PGK; pfam00162
862908010871	substrate binding site [chemical binding]; other site
862908010872	hinge regions; other site
862908010873	ADP binding site [chemical binding]; other site
862908010874	catalytic site [active]
862908010875	HMMPfam hit to PF00162, Phosphoglycerate kinase, score 2.1e-162
862908010876	Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually...; Region: TIM; cd00311
862908010877	triosephosphate isomerase; Provisional; Region: PRK14567
862908010878	substrate binding site [chemical binding]; other site
862908010879	dimer interface [polypeptide binding]; other site
862908010880	catalytic triad [active]
862908010881	PS00228 Tubulin-beta mRNA autoregulation signal.
862908010882	HMMPfam hit to PF00121, Triosephosphate isomerase, score 5.6e-110
862908010883	PS00171 Triosephosphate isomerase active site.
862908010884	Preprotein translocase SecG subunit; Region: SecG; cl09123
862908010885	Signal peptide predicted for BMS2886 by SignalP 2.0 HMM (Signal peptide probability 0.748) with cleavage site probability 0.200 between residues 30 and 31
862908010886	HMMPfam hit to PF03840, Preprotein translocase SecG subunit, score 2e-14
862908010887	2 probable transmembrane helices predicted for BMS2886 by TMHMM2.0 at aa 5-27 and 47-69
862908010888	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
862908010889	Zn2+ binding site [ion binding]; other site
862908010890	Mg2+ binding site [ion binding]; other site
862908010891	HMMPfam hit to PF01966, Metal-dependent phosphohydrolase, HD subdomain, score 2.8e-24
862908010892	DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily; Region: DPM_DPG-synthase_like; cd04179
862908010893	Ligand binding site; other site
862908010894	Putative Catalytic site; other site
862908010895	DXD motif; other site
862908010896	HMMPfam hit to PF00535, Glycosyl transferase, family 2, score 2e-16
862908010897	Protoporphyrinogen oxidase [Coenzyme metabolism]; Region: HemY; COG1232
862908010898	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; pfam13450
862908010899	SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely...; Region: SGNH_hydrolase; cl01053
862908010900	oxyanion hole [active]
862908010901	Signal peptide predicted for BMS2891 by SignalP 2.0 HMM (Signal peptide probability 0.911) with cleavage site probability 0.496 between residues 21 and 22
862908010902	9 probable transmembrane helices predicted for BMS2892 by TMHMM2.0 at aa 39-58, 65-87, 107-129, 141-163, 178-195, 238-260, 270-285, 292-311 and 321-338
862908010903	Single-stranded DNA-binding protein [DNA replication, recombination, and repair]; Region: Ssb; COG0629
862908010904	SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496
862908010905	dimer interface [polypeptide binding]; other site
862908010906	ssDNA binding site [nucleotide binding]; other site
862908010907	tetramer (dimer of dimers) interface [polypeptide binding]; other site
862908010908	HMMPfam hit to PF00436, Single-strand binding protein/Primosomal replication protein n, score 3.4e-36
862908010909	PS00735 Single-strand binding protein family signature 1.
862908010910	1 probable transmembrane helix predicted for BMS2895 by TMHMM2.0 at aa 67-89
862908010911	1 probable transmembrane helix predicted for BMS2896 by TMHMM2.0 at aa 12-34
862908010912	Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of  glutathione (GSH) with a wide range of endogenous and xenobiotic...; Region: GST_N_family; cd00570
862908010913	C-terminal domain interface [polypeptide binding]; other site
862908010914	GSH binding site (G-site) [chemical binding]; other site
862908010915	dimer interface [polypeptide binding]; other site
862908010916	PS00195 Glutaredoxin active site.
862908010917	HD superfamily phosphohydrolases [General function prediction only]; Region: COG1078
862908010918	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
862908010919	Zn2+ binding site [ion binding]; other site
862908010920	Mg2+ binding site [ion binding]; other site
862908010921	8 probable transmembrane helices predicted for BMS2901 by TMHMM2.0 at aa 10-32, 53-72, 87-109, 122-139, 149-168, 189-206, 221-243 and 269-291
862908010922	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
862908010923	active site residue [active]
862908010924	Transcriptional regulators [Transcription]; Region: MarR; COG1846
862908010925	MarR family; Region: MarR_2; pfam12802
862908010926	MarR family; Region: MarR_2; cl17246
862908010927	HMMPfam hit to PF01047, Bacterial regulatory protein, MarR, score 2.7e-05
862908010928	Signal peptide predicted for BMS2905 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.862 between residues 23 and 24
862908010929	Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad...; Region: Tryp_SPc; cl00149
862908010930	Signal peptide predicted for BMS2906 by SignalP 2.0 HMM (Signal peptide probability 0.706) with cleavage site probability 0.684 between residues 22 and 23
862908010931	Transposase IS200 like; Region: Y1_Tnp; cl00848
862908010932	Signal peptide predicted for BMS2910 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.467 between residues 23 and 24
862908010933	Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490
862908010934	putative catalytic site [active]
862908010935	putative metal binding site [ion binding]; other site
862908010936	putative phosphate binding site [ion binding]; other site
862908010937	Signal peptide predicted for BMS2911 by SignalP 2.0 HMM (Signal peptide probability 0.990) with cleavage site probability 0.749 between residues 26 and 27
862908010938	HMMPfam hit to PF03372, Endonuclease/exonuclease/phosphatase, score 5e-24
862908010939	Signal peptide predicted for BMS2912 by SignalP 2.0 HMM (Signal peptide probability 0.917) with cleavage site probability 0.247 between residues 32 and 33
862908010940	rod shape-determining protein RodA; Region: rodA_shape; TIGR02210
862908010941	HMMPfam hit to PF01098, Cell cycle protein, score 1.8e-103
862908010942	9 probable transmembrane helices predicted for BMS2913 by TMHMM2.0 at aa 15-34, 47-69, 73-95, 138-160, 164-181, 188-207, 276-298, 310-332 and 342-364
862908010943	PS00428 Cell cycle proteins ftsW / rodA / spoVE signature.
862908010944	penicillin-binding protein 2; Region: pbp2_mrdA; TIGR03423
862908010945	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
862908010946	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; pfam00905
862908010947	HMMPfam hit to PF00905, Penicillin-binding protein, transpeptidase, score 2.8e-91
862908010948	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010949	HMMPfam hit to PF03717, Penicillin-binding protein, dimerisation domain, score 1.4e-40
862908010950	1 probable transmembrane helix predicted for BMS2914 by TMHMM2.0 at aa 31-50
862908010951	5 probable transmembrane helices predicted for BMS2915 by TMHMM2.0 at aa 12-34, 44-66, 73-95, 105-127 and 140-162
862908010952	rod shape-determining protein MreC; Provisional; Region: PRK13922
862908010953	rod shape-determining protein MreC; Region: MreC; pfam04085
862908010954	HMMPfam hit to PF04085, Rod shape-determining protein MreC, score 9.6e-25
862908010955	SurA N-terminal domain; Region: SurA_N_3; cl07813
862908010956	peptidylprolyl isomerase; Provisional; Region: prsA; PRK00059
862908010957	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
862908010958	Signal peptide predicted for BMS2917 by SignalP 2.0 HMM (Signal peptide probability 0.947) with cleavage site probability 0.908 between residues 43 and 44
862908010959	1 probable transmembrane helix predicted for BMS2917 by TMHMM2.0 at aa 13-35
862908010960	HMMPfam hit to PF00639, PpiC-type peptidyl-prolyl cis-trans isomerase, score 1e-19
862908010961	4Fe-4S single cluster domain; Region: Fer4_13; pfam13370
862908010962	Uncharacterized conserved protein [Function unknown]; Region: COG3379
862908010963	Type I phosphodiesterase / nucleotide pyrophosphatase; Region: Phosphodiest; pfam01663
862908010964	Signal peptide predicted for BMS2919 by SignalP 2.0 HMM (Signal peptide probability 0.683) with cleavage site probability 0.260 between residues 15 and 16
862908010965	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908010966	HMMPfam hit to PF01663, Type I phosphodiesterase/nucleotide pyrophosphatase, score 5.3e-77
862908010967	flagellar hook protein FlgE; Validated; Region: flgE; PRK05682
862908010968	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
862908010969	Flagellar basal body protein FlaE; Region: FlaE; pfam07559
862908010970	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
862908010971	HMMPfam hit to PF06429, Protein of unknown function DUF1078, score 1.4e-19
862908010972	HMMPfam hit to PF07559, Flagellar basal body FlaE, score 6.1e-18
862908010973	HMMPfam hit to PF00460, Flagellar basal body rod protein, score 7.6e-07
862908010974	Protein of unknown function (DUF3766); Region: DUF3766; cl11797
862908010975	Flagellar hook capping protein - N-terminal region; Region: FlgD; pfam03963
862908010976	Flagellar hook capping protein [Cell motility and secretion]; Region: FlgD; COG1843
862908010977	FlgD Tudor-like domain; Region: FLgD_tudor; pfam13861
862908010978	HMMPfam hit to PF03963, Flagellar hook capping protein, score 2.3e-24
862908010979	MgtE intracellular N domain; Region: MgtE_N; cl15244
862908010980	Signal peptide predicted for BMS2924 by SignalP 2.0 HMM (Signal peptide probability 0.980) with cleavage site probability 0.930 between residues 18 and 19
862908010981	flagellar export protein FliJ; Region: flagell_FliJ; TIGR02473
862908010982	flagellar protein export ATPase FliI; Region: FliI_clade1; TIGR03496
862908010983	Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they...; Region: ATPase_flagellum-secretory_path_III; cd01136
862908010984	Walker A motif/ATP binding site; other site
862908010985	Walker B motif; other site
862908010986	HMMPfam hit to PF00006, H+-transporting two-sector ATPase, alpha/beta subunit, central region, score 4.2e-105
862908010987	PS00152 ATP synthase alpha and beta subunits signature.
862908010988	PS00017 ATP/GTP-binding site motif A (P-loop).
862908010989	flagellar assembly protein H; Validated; Region: fliH; PRK06669
862908010990	Flagellar assembly protein FliH; Region: FliH; pfam02108
862908010991	flagellar motor switch protein G; Validated; Region: fliG; PRK05686
862908010992	MgtE intracellular N domain; Region: MgtE_N; cl15244
862908010993	FliG C-terminal domain; Region: FliG_C; pfam01706
862908010994	HMMPfam hit to PF01706, Flagellar motor switch protein FliG, score 4.4e-49
862908010995	flagellar MS-ring protein; Reviewed; Region: fliF; PRK06007
862908010996	Secretory protein of YscJ/FliF family; Region: YscJ_FliF; cl01907
862908010997	Flagellar M-ring protein C-terminal; Region: YscJ_FliF_C; pfam08345
862908010998	2 probable transmembrane helices predicted for BMS2929 by TMHMM2.0 at aa 25-44 and 440-462
862908010999	HMMPfam hit to PF01514, Secretory protein YscJ/FliF, score 3.7e-52
862908011000	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908011001	Flagellar hook-basal body complex protein FliE; Region: FliE; pfam02049
862908011002	HMMPfam hit to PF02049, Flagellar hook-basal body complex protein FliE, score 4.1e-18
862908011003	flagellar basal body rod protein FlgC; Reviewed; Region: flgC; PRK05681
862908011004	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
862908011005	HMMPfam hit to PF06429, Protein of unknown function DUF1078, score 8.2e-05
862908011006	flagellar basal body rod protein FlgB; Reviewed; Region: flgB; PRK05680
862908011007	flagellar basal body rod protein FlgB; Reviewed; Region: flgB; PRK07182
862908011008	HMMPfam hit to PF00460, Flagellar basal body rod protein, score 5.8e-09
862908011009	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
862908011010	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908011011	Walker A motif; other site
862908011012	ATP binding site [chemical binding]; other site
862908011013	Walker B motif; other site
862908011014	arginine finger; other site
862908011015	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
862908011016	HMMPfam hit to PF02954, Helix-turn-helix, Fis-type, score 2.1e-12
862908011017	HMMPfam hit to PF00158, Sigma-54 factor, interaction region, score 4.9e-18
862908011018	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
862908011019	TPR repeat; Region: TPR_11; pfam13414
862908011020	HMMPfam hit to PF07719, , score 1.6; PF07719, Tetratricopeptide repeat
862908011021	HMMPfam hit to PF07719, , score 0.5; PF07719, Tetratricopeptide repeat
862908011022	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
862908011023	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908011024	active site
862908011025	phosphorylation site [posttranslational modification]
862908011026	intermolecular recognition site; other site
862908011027	dimerization interface [polypeptide binding]; other site
862908011028	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908011029	Walker A motif; other site
862908011030	ATP binding site [chemical binding]; other site
862908011031	Walker B motif; other site
862908011032	arginine finger; other site
862908011033	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
862908011034	HMMPfam hit to PF02954, Helix-turn-helix, Fis-type, score 4e-11
862908011035	PS00688 Sigma-54 interaction domain C-terminal part signature.
862908011036	HMMPfam hit to PF00158, Sigma-54 factor, interaction region, score 7.6e-150
862908011037	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
862908011038	HMMPfam hit to PF00072, Response regulator receiver, score 6.2e-13
862908011039	2 probable transmembrane helices predicted for BMS2936 by TMHMM2.0 at aa 10-29 and 36-58
862908011040	S-adenosylmethionine synthetase; Validated; Region: PRK05250
862908011041	S-adenosylmethionine synthetase, N-terminal domain; Region: S-AdoMet_synt_N; pfam00438
862908011042	S-adenosylmethionine synthetase, central domain; Region: S-AdoMet_synt_M; pfam02772
862908011043	S-adenosylmethionine synthetase, C-terminal domain; Region: S-AdoMet_synt_C; pfam02773
862908011044	HMMPfam hit to PF02773, S-adenosylmethionine synthetase, score 8.6e-80
862908011045	PS00377 S-adenosylmethionine synthetase signature 2.
862908011046	HMMPfam hit to PF02772, S-adenosylmethionine synthetase, score 3.5e-66
862908011047	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
862908011048	PS00376 S-adenosylmethionine synthetase signature 1.
862908011049	HMMPfam hit to PF00438, S-adenosylmethionine synthetase, score 5.8e-56
862908011050	Signal peptide predicted for BMS2938 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.905 between residues 18 and 19
862908011051	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Region: mpl; TIGR01081
862908011052	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
862908011053	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
862908011054	HMMPfam hit to PF02875, Cytoplasmic peptidoglycan synthetases, C-terminal, score 0.00028
862908011055	HMMPfam hit to PF01225, Cytoplasmic peptidoglycan synthetase, N-terminal, score 3.3e-28
862908011056	Fic/DOC family; Region: Fic; pfam02661
862908011057	HMMPfam hit to PF02661, Filamentation induced by cAMP protein Fic, score 2.4e-06
862908011058	Signal peptide predicted for BMS2940 by SignalP 2.0 HMM (Signal peptide probability 0.976) with cleavage site probability 0.577 between residues 21 and 22
862908011059	Beta-lactamase; Region: Beta-lactamase; cl17358
862908011060	HMMPfam hit to PF00144, Beta-lactamase, score 0.0018
862908011061	pyruvate phosphate dikinase; Provisional; Region: PRK09279
862908011062	Pyruvate phosphate dikinase, PEP/pyruvate binding domain; Region: PPDK_N; pfam01326
862908011063	PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; pfam00391
862908011064	PEP-utilising enzyme, TIM barrel domain; Region: PEP-utilizers_C; pfam02896
862908011065	HMMPfam hit to PF02896, PEP-utilizing enzyme, score 1.2e-145
862908011066	PS00742 PEP-utilizing enzymes signature 2.
862908011067	HMMPfam hit to PF00391, PEP-utilising enzyme, mobile region, score 9.5e-40
862908011068	PS00370 PEP-utilizing enzymes phosphorylation site signature.
862908011069	HMMPfam hit to PF01326, Pyruvate phosphate dikinase, PEP/pyruvate-binding, score 3.4e-160
862908011070	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908011071	glycyl-tRNA synthetase; Provisional; Region: PRK04173
862908011072	Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3...; Region: GlyRS-like_core; cd00774
862908011073	dimer interface [polypeptide binding]; other site
862908011074	motif 1; other site
862908011075	active site
862908011076	motif 2; other site
862908011077	motif 3; other site
862908011078	GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: GlyRS_anticodon; cd00858
862908011079	anticodon binding site; other site
862908011080	HMMPfam hit to PF03129, Anticodon-binding, score 9.8e-24
862908011081	HMMPfam hit to PF00587, tRNA synthetases, class-II (G, H, P and S), score 7.8e-58
862908011082	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
862908011083	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
862908011084	ABC transporter transmembrane region; Region: ABC_membrane; pfam00664
862908011085	ATP-binding cassette transporter nucleotide-binding domain; Region: ABC_ATPase; cl17201
862908011086	Walker A/P-loop; other site
862908011087	ATP binding site [chemical binding]; other site
862908011088	Q-loop/lid; other site
862908011089	ABC transporter signature motif; other site
862908011090	Walker B; other site
862908011091	D-loop; other site
862908011092	H-loop/switch region; other site
862908011093	HMMPfam hit to PF00005, ABC transporter, score 4.6e-58
862908011094	PS00211 ABC transporters family signature.
862908011095	PS00017 ATP/GTP-binding site motif A (P-loop).
862908011096	HMMPfam hit to PF00664, ABC transporter, transmembrane region, score 1.2e-24
862908011097	3 probable transmembrane helices predicted for BMS2945 by TMHMM2.0 at aa 20-38, 58-80 and 154-176
862908011098	Signal peptide predicted for BMS2945 by SignalP 2.0 HMM (Signal peptide probability 0.906) with cleavage site probability 0.699 between residues 36 and 37
862908011099	Signal peptide predicted for BMS2946 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.966 between residues 18 and 19
862908011100	Signal peptide predicted for BMS2948 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.784 between residues 34 and 35
862908011102	HMMPfam hit to PF00271, Helicase, C-terminal, score 0.0013
862908011103	HMMPfam hit to PF00270, DEAD/DEAH box helicase, N-terminal, score 9.4e-10
862908011104	PS00017 ATP/GTP-binding site motif A (P-loop).
862908011105	16S ribosomal RNA methyltransferase RsmE; Provisional; Region: PRK11713
862908011106	RNA methyltransferase, RsmE family; Region: TIGR00046
862908011107	HMMPfam hit to PF04452, Protein of unknown function DUF558, score 0.00029
862908011108	PS00037 Myb DNA-binding domain repeat signature 1.
862908011110	HMMPfam hit to PF00072, Response regulator receiver, score 7.1e-07
862908011111	NifU-like domain; Region: NifU; cl00484
862908011112	HMMPfam hit to PF01106, Nitrogen-fixing NifU, C-terminal, score 2.8e-20
862908011113	Acetyltransferase (GNAT) domain; Region: Acetyltransf_3; pfam13302
862908011114	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
862908011115	Coenzyme A binding pocket [chemical binding]; other site
862908011116	HMMPfam hit to PF00583, GCN5-related N-acetyltransferase, score 2.7e-10
862908011117	Predicted amidohydrolase [General function prediction only]; Region: COG0388
862908011118	Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes; Region: nitrilase; cl11424
862908011119	active site
862908011120	catalytic triad [active]
862908011121	dimer interface [polypeptide binding]; other site
862908011122	HMMPfam hit to PF00795, Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, score 5.3e-20
862908011123	Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]; Region: Ugd; COG1004
862908011124	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Region: 3HCDH_N; pfam02737
862908011125	UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984
862908011126	UDP binding domain; Region: UDPG_MGDP_dh_C; smart00984
862908011127	HMMPfam hit to PF03720, UDP-glucose/GDP-mannose dehydrogenase, score 5.6e-24
862908011128	HMMPfam hit to PF00984, UDP-glucose/GDP-mannose dehydrogenase, score 7.7e-49
862908011129	HMMPfam hit to PF03721, UDP-glucose/GDP-mannose dehydrogenase, score 2.8e-83
862908011130	Signal peptide predicted for BMS2956 by SignalP 2.0 HMM (Signal peptide probability 0.842) with cleavage site probability 0.838 between residues 20 and 21
862908011131	Uncharacterized protein family (UPF0104); Region: UPF0104; pfam03706
862908011132	8 probable transmembrane helices predicted for BMS2957 by TMHMM2.0 at aa 7-29, 39-61, 81-103, 118-140, 153-175, 213-235, 248-270 and 290-312
862908011133	GTP-binding protein LepA; Provisional; Region: PRK05433
862908011134	LepA also known as Elongation Factor 4 (EF4); Region: LepA; cd01890
862908011135	G1 box; other site
862908011136	putative GEF interaction site [polypeptide binding]; other site
862908011137	GTP/Mg2+ binding site [chemical binding]; other site
862908011138	Switch I region; other site
862908011139	G2 box; other site
862908011140	G3 box; other site
862908011141	Switch II region; other site
862908011142	G4 box; other site
862908011143	G5 box; other site
862908011144	lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu...; Region: lepA_II; cd03699
862908011145	lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane.   LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits...; Region: lepA_C; cd03709
862908011146	GTP-binding protein LepA C-terminus; Region: LepA_C; pfam06421
862908011147	HMMPfam hit to PF06421, GTP-binding protein LepA, score 8.9e-80
862908011148	HMMPfam hit to PF00679, Elongation factor G, C-terminal, score 1.9e-38
862908011149	HMMPfam hit to PF03144, Elongation factor Tu, domain 2, score 6.3e-11
862908011150	HMMPfam hit to PF00009, Protein synthesis factor, GTP-binding, score 3.4e-69
862908011151	PS00301 GTP-binding elongation factors signature.
862908011152	PS00017 ATP/GTP-binding site motif A (P-loop).
862908011153	Histidine kinase, Adenylyl cyclase, Methyl-accepting protein, and Phosphatase (HAMP) domain. HAMP is a signaling domain which occurs in a wide variety of signaling proteins, many of which are bacterial. The HAMP domain consists of two alpha helices...; Region: HAMP; cd06225
862908011154	dimerization interface [polypeptide binding]; other site
862908011155	HMMPfam hit to PF00672, Histidine kinase, HAMP region, score 5.9e-09
862908011156	2 probable transmembrane helices predicted for BMS2960 by TMHMM2.0 at aa 10-32 and 183-205
862908011157	PS00622 Bacterial regulatory proteins, luxR family signature.
862908011158	K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]; Region: TrkA; COG0569
862908011159	TrkA-N domain; Region: TrkA_N; pfam02254
862908011160	TrkA-C domain; Region: TrkA_C; pfam02080
862908011161	PS00017 ATP/GTP-binding site motif A (P-loop).
862908011162	HMMPfam hit to PF02254, TrkA-N, score 2e-24
862908011163	Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: TrkG; COG0168
862908011164	potassium uptake protein, TrkH family; Region: 2a38; TIGR00933
862908011165	HMMPfam hit to PF02386, Cation transporter, score 3.3e-77
862908011166	13 probable transmembrane helices predicted for BMS2962 by TMHMM2.0 at aa 7-29, 44-64, 77-99, 139-161, 168-190, 205-227, 262-284, 315-337, 358-380, 419-453, 474-496, 506-528 and 535-557
862908011167	SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]; Region: TrmA; COG2265
862908011168	HMMPfam hit to PF05958, tRNA -methyltransferase, score 1.9e-05
862908011169	TPR repeat; Region: TPR_11; pfam13414
862908011170	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908011171	binding surface
862908011172	TPR motif; other site
862908011173	TPR repeat; Region: TPR_11; pfam13414
862908011174	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908011175	binding surface
862908011176	TPR motif; other site
862908011177	tol-pal system protein YbgF; Region: tol_pal_ybgF; TIGR02795
862908011178	HMMPfam hit to PF07719, , score 1.5; PF07719, Tetratricopeptide repeat; HMMPfam hit to PF00515, TPR repeat, score 0.19
862908011179	HMMPfam hit to PF07719, , score 0.026; PF07719, Tetratricopeptide repeat; HMMPfam hit to PF00515, TPR repeat, score 0.002
862908011180	HMMPfam hit to PF00515, TPR repeat, score 0.0032; HMMPfam hit to PF07719, , score 0.36; PF07719, Tetratricopeptide repeat
862908011181	HMMPfam hit to PF00515, TPR repeat, score 0.33; HMMPfam hit to PF07719, , score 0.16; PF07719, Tetratricopeptide repeat
862908011182	Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]; Region: COG1426
862908011183	Helix-turn-helix domain; Region: HTH_25; pfam13413
862908011184	1 probable transmembrane helix predicted for BMS2966 by TMHMM2.0 at aa 132-154
862908011185	Predicted permeases [General function prediction only]; Region: COG0795
862908011186	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
862908011187	HMMPfam hit to PF03739, Predicted permease YjgP/YjgQ, score 1.9e-42
862908011188	6 probable transmembrane helices predicted for BMS2967 by TMHMM2.0 at aa 9-31, 57-79, 100-119, 295-317, 330-349 and 353-375
862908011189	multifunctional aminopeptidase A; Provisional; Region: PRK00913
862908011190	Cytosol aminopeptidase family, N-terminal and catalytic domains.  Family M17 contains zinc- and manganese-dependent exopeptidases ( EC  3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and...; Region: Peptidase_M17; cd00433
862908011191	interface (dimer of trimers) [polypeptide binding]; other site
862908011192	Substrate-binding/catalytic site; other site
862908011193	Zn-binding sites [ion binding]; other site
862908011194	HMMPfam hit to PF02789, Peptidase M17, cytosol aminopeptidase, N-terminal, score 0.0054
862908011195	HMMPfam hit to PF00883, Peptidase M17, cytosol aminopeptidase, C-terminal, score 3.8e-139
862908011196	PS00631 Cytosol aminopeptidase signature.
862908011197	Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]; Region: CspR; COG0219
862908011198	HMMPfam hit to PF00588, tRNA/rRNA methyltransferase (SpoU), score 1e-29
862908011199	Signal peptide predicted for BMS2971 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 between residues 22 and 23
862908011200	Signal peptide predicted for BMS2972 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.991 between residues 20 and 21
862908011201	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908011202	membrane-bound lytic murein transglycosylase D; Provisional; Region: mltD; PRK10783
862908011203	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
862908011204	N-acetyl-D-glucosamine binding site [chemical binding]; other site
862908011205	catalytic residue [active]
862908011206	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
862908011207	HMMPfam hit to PF01476, Peptidoglycan-binding LysM, score 7.1e-08
862908011208	HMMPfam hit to PF01464, SLT, score 2.1e-25
862908011209	Signal peptide predicted for BMS2974 by SignalP 2.0 HMM (Signal peptide probability 0.710) with cleavage site probability 0.354 between residues 21 and 22
862908011210	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908011211	HMMPfam hit to PF00375, Sodium:dicarboxylate symporter, score 8.8e-08
862908011212	2 probable transmembrane helices predicted for BMS2975 by TMHMM2.0 at aa 96-118 and 123-145
862908011213	PS00714 Sodium:dicarboxylate symporter family signature 2.
862908011214	Signal peptide predicted for BMS2975 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.991 between residues 41 and 42
862908011215	5 probable transmembrane helices predicted for BMS2976 by TMHMM2.0 at aa 10-32, 44-66, 81-103, 156-178 and 193-215
862908011216	Signal peptide predicted for BMS2976 by SignalP 2.0 HMM (Signal peptide probability 0.600) with cleavage site probability 0.282 between residues 35 and 36
862908011217	Signal peptide predicted for BMS2977 by SignalP 2.0 HMM (Signal peptide probability 0.820) with cleavage site probability 0.722 between residues 28 and 29
862908011218	prolipoprotein diacylglyceryl transferase; Reviewed; Region: PRK00052
862908011219	HMMPfam hit to PF01790, Prolipoprotein diacylglyceryl transferase, score 7.2e-102
862908011220	5 probable transmembrane helices predicted for BMS2978 by TMHMM2.0 at aa 10-32, 52-74, 89-111, 198-215 and 230-252
862908011221	PS01311 Prolipoprotein diacylglyceryl transferase signature.
862908011222	phytoene desaturase; Region: phytoene_desat; TIGR02731
862908011223	50S ribosomal protein L21/unknown domain fusion protein; Provisional; Region: PRK12278
862908011224	50S ribosomal protein L21; Validated; Region: rplU; PRK05573
862908011225	HMMPfam hit to PF00829, Ribosomal protein L21, score 1.2e-41
862908011226	50S ribosomal protein L27; Validated; Region: rpmA; PRK05435
862908011227	HMMPfam hit to PF01016, Ribosomal protein L27, score 1.5e-34
862908011228	GTPase CgtA; Reviewed; Region: obgE; PRK12299
862908011229	GTP1/OBG; Region: GTP1_OBG; pfam01018
862908011230	Obg GTPase; Region: Obg; cd01898
862908011231	G1 box; other site
862908011232	GTP/Mg2+ binding site [chemical binding]; other site
862908011233	Switch I region; other site
862908011234	G2 box; other site
862908011235	G3 box; other site
862908011236	Switch II region; other site
862908011237	G4 box; other site
862908011238	G5 box; other site
862908011239	HMMPfam hit to PF01018, GTP1/OBG subdomain, score 6.1e-78
862908011240	HMMPfam hit to PF01926, GTP-binding protein, HSR1-related, score 2.4e-36
862908011241	PS00017 ATP/GTP-binding site motif A (P-loop).
862908011242	Oligomerisation domain; Region: Oligomerisation; pfam02410
862908011243	HMMPfam hit to PF02410, Iojap-related protein, score 3.1e-24
862908011244	rRNA large subunit methyltransferase; Provisional; Region: PRK00103
862908011245	HMMPfam hit to PF02590, Protein of unknown function DUF163, score 2.2e-36
862908011246	9 probable transmembrane helices predicted for BMS2988 by TMHMM2.0 at aa 13-35, 88-107, 114-133, 137-154, 166-188, 198-217, 263-282, 292-311 and 318-336
862908011247	Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to...; Region: Gn_AT_II; cl00319
862908011248	Asparagine synthase; Region: Asn_synthase; pfam00733
862908011249	HMMPfam hit to PF00733, Asparagine synthase, score 5.9e-07
862908011250	nucleotide sugar dehydrogenase; Region: NDP-sugDHase; TIGR03026
862908011251	UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984
862908011252	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; Region: UDPG_MGDP_dh_C; cl17747
862908011253	HMMPfam hit to PF03721, UDP-glucose/GDP-mannose dehydrogenase, score 9.7e-19
862908011254	HMMPfam hit to PF00984, UDP-glucose/GDP-mannose dehydrogenase, score 2.2e-26
862908011255	DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily; Region: DPM_DPG-synthase_like; cd04179
862908011256	Ligand binding site; other site
862908011257	Putative Catalytic site; other site
862908011258	DXD motif; other site
862908011259	HMMPfam hit to PF00535, Glycosyl transferase, family 2, score 1.3e-15
862908011260	2 probable transmembrane helices predicted for BMS2991 by TMHMM2.0 at aa 236-255 and 260-277
862908011261	Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]; Region: AsnB; COG0367
862908011262	Glutamine amidotransferases class-II (GATase) asparagine synthase_B type.  Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a  glutaminase domain and a...; Region: AsnB; cd00712
862908011263	active site
862908011264	dimer interface [polypeptide binding]; other site
862908011265	The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B  catalyzes the...; Region: Asn_Synthase_B_C; cd01991
862908011266	Ligand Binding Site [chemical binding]; other site
862908011267	Molecular Tunnel; other site
862908011268	HMMPfam hit to PF00310, Glutamine amidotransferase, class-II, score 7.4e-13
862908011269	HMMPfam hit to PF00733, Asparagine synthase, score 6.6e-41
862908011270	tryptophanyl-tRNA synthetase II; Reviewed; Region: PRK12282
862908011271	catalytic core domain of tryptophanyl-tRNA synthetase; Region: TrpRS_core; cd00806
862908011272	active site
862908011273	HIGH motif; other site
862908011274	dimer interface [polypeptide binding]; other site
862908011275	KMSKS motif; other site
862908011276	HMMPfam hit to PF00579, Aminoacyl-tRNA synthetase, class Ib, score 5.1e-32
862908011277	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908011278	Signal peptide predicted for BMS2995 by SignalP 2.0 HMM (Signal peptide probability 0.820) with cleavage site probability 0.410 between residues 30 and 31
862908011279	This hit extended beyond the end of the feature by 1 aa and was clipped.; PS00294 Prenyl group binding site (CAAX box).
862908011280	Signal peptide predicted for BMS2996 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.986 between residues 29 and 30
862908011281	von Willebrand factor; Region: vWF_A; pfam12450
862908011282	Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]; Region: COG2304
862908011283	VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b...; Region: vWA_subgroup; cd01465
862908011284	metal ion-dependent adhesion site (MIDAS); other site
862908011285	Domain of unknown function (DUF3520); Region: DUF3520; pfam12034
862908011286	PS00435 Peroxidases proximal heme-ligand signature.
862908011287	HMMPfam hit to PF00092, von Willebrand factor, type A, score 6.5e-22
862908011288	1 probable transmembrane helix predicted for BMS2997 by TMHMM2.0 at aa 83-105
862908011289	RNA polymerase sigma factor, sigma-70 family; Region: sigma70-ECF; TIGR02937
862908011290	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
862908011291	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
862908011292	DNA binding residues [nucleotide binding]
862908011293	HMMPfam hit to PF04542, Sigma-70 region 2, score 6.7e-09
862908011294	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
862908011295	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppC; COG1173
862908011296	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
862908011297	dimer interface [polypeptide binding]; other site
862908011298	conserved gate region; other site
862908011299	putative PBP binding loops; other site
862908011300	ABC-ATPase subunit interface; other site
862908011301	HMMPfam hit to PF00528, Binding-protein-dependent transport systems inner membrane component, score 9.1e-43
862908011302	6 probable transmembrane helices predicted for BMS3001 by TMHMM2.0 at aa 40-62, 101-123, 135-157, 162-181, 216-238 and 266-288
862908011303	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
862908011304	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
862908011305	dimer interface [polypeptide binding]; other site
862908011306	conserved gate region; other site
862908011307	putative PBP binding loops; other site
862908011308	ABC-ATPase subunit interface; other site
862908011309	HMMPfam hit to PF00528, Binding-protein-dependent transport systems inner membrane component, score 4.3e-46
862908011310	6 probable transmembrane helices predicted for BMS3002 by TMHMM2.0 at aa 27-49, 119-141, 150-172, 192-209, 250-272 and 300-322
862908011311	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
862908011312	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
862908011313	The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_18; cd08505
862908011314	HMMPfam hit to PF00496, Bacterial extracellular solute-binding protein, family 5, score 6.8e-72
862908011315	Signal peptide predicted for BMS3003 by SignalP 2.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.593 between residues 22 and 23
862908011316	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908011317	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908011318	binding surface
862908011319	TPR motif; other site
862908011320	Tetratricopeptide repeat; Region: TPR_16; pfam13432
862908011321	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908011322	binding surface
862908011323	Tetratricopeptide repeat; Region: TPR_16; pfam13432
862908011324	TPR motif; other site
862908011325	Tetratricopeptide repeat; Region: TPR_16; pfam13432
862908011326	Tetratricopeptide repeat; Region: TPR_16; pfam13432
862908011327	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908011328	binding surface
862908011329	TPR motif; other site
862908011330	HMMPfam hit to PF00515, TPR repeat, score 0.19
862908011331	HMMPfam hit to PF07719, , score 1.6; PF07719, Tetratricopeptide repeat
862908011332	HMMPfam hit to PF00515, TPR repeat, score 1.1; HMMPfam hit to PF07719, , score 0.27; PF07719, Tetratricopeptide repeat
862908011333	HMMPfam hit to PF07719, , score 2; PF07719, Tetratricopeptide repeat; HMMPfam hit to PF00515, TPR repeat, score 0.36
862908011334	HMMPfam hit to PF00515, TPR repeat, score 1.3; HMMPfam hit to PF07719, , score 1.1; PF07719, Tetratricopeptide repeat
862908011335	HMMPfam hit to PF00515, TPR repeat, score 0.36
862908011336	HMMPfam hit to PF07719, , score 0.0032; PF07719, Tetratricopeptide repeat; HMMPfam hit to PF00515, TPR repeat, score 0.3
862908011337	HMMPfam hit to PF00515, TPR repeat, score 0.038; HMMPfam hit to PF07719, , score 0.0029; PF07719, Tetratricopeptide repeat
862908011338	HMMPfam hit to PF00515, TPR repeat, score 0.24; HMMPfam hit to PF07719, , score 0.38; PF07719, Tetratricopeptide repeat
862908011339	Signal peptide predicted for BMS3005 by SignalP 2.0 HMM (Signal peptide probability 0.967) with cleavage site probability 0.579 between residues 23 and 24
862908011340	PHB/PHA accumulation regulator DNA-binding domain; Region: PHB_acc_N; pfam07879
862908011341	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; pfam13505
862908011342	Signal peptide predicted for BMS3007 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.997 between residues 26 and 27
862908011343	PS00017 ATP/GTP-binding site motif A (P-loop).
862908011344	Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: ArsA; COG0003
862908011345	ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces...; Region: ArsA; cd02035
862908011346	P loop; other site
862908011347	Nucleotide binding site [chemical binding]; other site
862908011348	DTAP/Switch II; other site
862908011349	Switch I; other site
862908011350	HMMPfam hit to PF02374, Anion-transporting ATPase, score 1.5e-07
862908011351	PS00017 ATP/GTP-binding site motif A (P-loop).
862908011352	Glutamate-cysteine ligase; Region: GshA; pfam08886
862908011353	glutamate--cysteine ligase, T. ferrooxidans family; Region: gshA_ferroox; TIGR02049
862908011354	cystathionine beta-synthase; Region: cysta_beta; TIGR01137
862908011355	CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine; Region: CBS_like; cd01561
862908011356	dimer interface [polypeptide binding]; other site
862908011357	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908011358	catalytic residue [active]
862908011359	The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called...; Region: CBS_pair; cl15354
862908011360	HMMPfam hit to PF00291, Pyridoxal-5'-phosphate-dependent enzyme, beta subunit, score 1.1e-94
862908011361	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908011362	HMMPfam hit to PF00571, CBS, score 9.9e-10
862908011363	HMMPfam hit to PF00571, CBS, score 0.5
862908011364	Cys/Met metabolism PLP-dependent enzyme; Region: Cys_Met_Meta_PP; pfam01053
862908011365	CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of...; Region: CGS_like; cd00614
862908011366	homodimer interface [polypeptide binding]; other site
862908011367	substrate-cofactor binding pocket; other site
862908011368	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908011369	catalytic residue [active]
862908011370	HMMPfam hit to PF01053, Cys/Met metabolism pyridoxal-phosphate-dependent enzymes, score 1.4e-219
862908011371	Signal peptide predicted for BMS3013 by SignalP 2.0 HMM (Signal peptide probability 0.673) with cleavage site probability 0.517 between residues 24 and 25
862908011372	c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]; Region: COG2206
862908011373	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
862908011374	Zn2+ binding site [ion binding]; other site
862908011375	Mg2+ binding site [ion binding]; other site
862908011376	HMMPfam hit to PF01966, Metal-dependent phosphohydrolase, HD subdomain, score 2.4e-25
862908011377	1 probable transmembrane helix predicted for BMS3016 by TMHMM2.0 at aa 90-109
862908011378	Class II Aldolase and Adducin N-terminal domain; Region: Aldolase_II; smart01007
862908011379	active site
862908011380	intersubunit interface [polypeptide binding]; other site
862908011381	Zn2+ binding site [ion binding]; other site
862908011382	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908011383	Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Region: Ferritin_like; cd00657
862908011384	dinuclear metal binding motif [ion binding]; other site
862908011385	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cl17251
862908011386	ATP binding site [chemical binding]; other site
862908011387	putative Mg++ binding site [ion binding]; other site
862908011388	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
862908011389	nucleotide binding region [chemical binding]; other site
862908011390	ATP-binding site [chemical binding]; other site
862908011391	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2.
862908011392	PS00018 EF-hand calcium-binding domain.
862908011393	HMMPfam hit to PF00271, Helicase, C-terminal, score 3.4e-15
862908011394	PS00017 ATP/GTP-binding site motif A (P-loop).
862908011395	Septum formation inhibitor MinC, N-terminal domain; Region: MinC_N; pfam05209
862908011396	M28 Zn-Peptidase Aeromonas (Vibrio) proteolytica aminopeptidase; Region: M28_AAP; cd03879
862908011397	Peptidase family M28; Region: Peptidase_M28; pfam04389
862908011398	active site
862908011399	metal binding site [ion binding]; metal-binding site
862908011400	HMMPfam hit to PF04389, Peptidase M28, score 4.8e-37
862908011401	Signal peptide predicted for BMS3021 by SignalP 2.0 HMM (Signal peptide probability 0.970) with cleavage site probability 0.969 between residues 58 and 59
862908011402	Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]; Region: COG2070
862908011403	2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase...; Region: NPD_like; cd04730
862908011404	FMN binding site [chemical binding]; other site
862908011405	substrate binding site [chemical binding]; other site
862908011406	putative catalytic residue [active]
862908011407	HMMPfam hit to PF03060, 2-nitropropane dioxygenase, NPD, score 2.2e-32
862908011408	Saccharopine Dehydrogenase NAD-binding and catalytic domains; Region: SDH; cd12188
862908011409	active site
862908011410	ligand binding site [chemical binding]; other site
862908011411	homodimer interface [polypeptide binding]; other site
862908011412	NAD(P) binding site [chemical binding]; other site
862908011413	HMMPfam hit to PF05222, Alanine dehydrogenase/PNT, N-terminal, score 1.9e-15
862908011414	HMMPfam hit to PF01262, Alanine dehydrogenase/PNT, C-terminal, score 1.3e-18
862908011415	Zn-dependent oligopeptidases [Amino acid transport and metabolism]; Region: Dcp; COG0339
862908011416	Peptidase family M3 dipeptidyl carboxypeptidase (DCP); Region: M3A_DCP; cd06456
862908011417	active site
862908011418	Zn binding site [ion binding]; other site
862908011419	HMMPfam hit to PF01432, Peptidase M3A and M3B, thimet/oligopeptidase F, score 3.3e-168
862908011420	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908011421	PS00157 Ribulose bisphosphate carboxylase large chain active site.
862908011422	TLC ATP/ADP transporter; Region: TLC; cl03940
862908011423	10 probable transmembrane helices predicted for BMS3025 by TMHMM2.0 at aa 24-46, 61-78, 90-109, 114-136, 149-171, 175-197, 230-252, 272-294, 301-323 and 386-408
862908011424	Signal peptide predicted for BMS3025 by SignalP 2.0 HMM (Signal peptide probability 0.926) with cleavage site probability 0.884 between residues 45 and 46
862908011425	Signal peptide predicted for BMS3026 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.971 between residues 21 and 22
862908011426	Helix-turn-helix diphteria tox regulatory element; Region: HTH_DTXR; smart00529
862908011427	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
862908011428	putative DNA binding site [nucleotide binding]; other site
862908011429	Iron dependent repressor, metal binding and dimerisation domain; Region: Fe_dep_repr_C; pfam02742
862908011430	HMMPfam hit to PF02742, Iron dependent repressor, score 1e-07
862908011431	Signal peptide predicted for BMS3028 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.630 between residues 22 and 23
862908011432	Protein of unknown function, DUF393; Region: DUF393; cl01136
862908011433	DPM1_like represents putative enzymes similar to eukaryotic DPM1; Region: DPM1_like; cd06442
862908011434	dolichyl-phosphate beta-D-mannosyltransferase; Region: PLN02726
862908011435	Ligand binding site; other site
862908011436	Putative Catalytic site; other site
862908011437	DXD motif; other site
862908011438	HMMPfam hit to PF00535, Glycosyl transferase, family 2, score 4.9e-27
862908011439	Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins); Region: GluZincin; cl14813
862908011440	Zn binding site [ion binding]; other site
862908011441	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908011442	Signal peptide predicted for BMS3031 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.989 between residues 18 and 19
862908011443	6 probable transmembrane helices predicted for BMS3032 by TMHMM2.0 at aa 7-29, 39-58, 70-92, 129-150, 170-187 and 197-216
862908011444	PS00881 Protein splicing signature.
862908011445	Ribose/Galactose Isomerase; Region: LacAB_rpiB; pfam02502
862908011446	HMMPfam hit to PF02502, Ribose/galactose isomerase, score 2.9e-32
862908011447	S-adenosyl-L-homocysteine hydrolase; Provisional; Region: PRK05476
862908011448	S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains; Region: SAHH; cd00401
862908011449	homotetramer interface [polypeptide binding]; other site
862908011450	ligand binding site [chemical binding]; other site
862908011451	catalytic site [active]
862908011452	NAD binding site [chemical binding]; other site
862908011453	HMMPfam hit to PF05221, S-adenosyl-L-homocysteine hydrolase, score 3.4e-148
862908011454	HMMPfam hit to PF00670, S-adenosyl-L-homocysteine hydrolase, score 4.1e-108
862908011455	PS00739 S-adenosyl-L-homocysteine hydrolase signature 2.
862908011456	PS00738 S-adenosyl-L-homocysteine hydrolase signature 1.
862908011457	Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: APH_ChoK_like; cl17270
862908011458	Phosphotransferase enzyme family; Region: APH; pfam01636
862908011459	active site
862908011460	substrate binding site [chemical binding]; other site
862908011461	ATP binding site [chemical binding]; other site
862908011462	HMMPfam hit to PF01636, Aminoglycoside phosphotransferase, score 3.4e-14
862908011463	Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]; Region: COG0116
862908011464	THUMP domain associated with S-adenosylmethionine-dependent methyltransferases; Region: THUMP_AdoMetMT; cd11715
862908011465	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908011466	HMMPfam hit to PF01170, Putative RNA methylase, score 5.9e-33
862908011467	PS01261 Uncharacterized protein family UPF0020 signature.
862908011468	PS00092 N-6 Adenine-specific DNA methylases signature.
862908011469	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
862908011470	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
862908011471	active site
862908011472	Acetyl-CoA dehydrogenase C-terminal like; Region: Acyl-CoA_dh_C; pfam12806
862908011473	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal, score 1.5e-41
862908011474	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, central region, score 1.5e-20
862908011475	PS00072 Acyl-CoA dehydrogenases signature 1.
862908011476	Signal peptide predicted for BMS3039 by SignalP 2.0 HMM (Signal peptide probability 0.976) with cleavage site probability 0.315 between residues 23 and 24
862908011477	Phosphoglyceromutase [Carbohydrate transport and metabolism]; Region: GpmI; COG0696
862908011478	phosphoglyceromutase; Provisional; Region: PRK05434
862908011479	HMMPfam hit to PF06415, BPG-independent PGAM, N-terminal, score 4.2e-157
862908011480	HMMPfam hit to PF01676, Metalloenzyme, score 1.8e-39
862908011481	6-phosphofructokinase; Provisional; Region: PRK03202
862908011482	6-phosphofructokinase; Region: PFKA_ATP; TIGR02482
862908011483	active site
862908011484	ADP/pyrophosphate binding site [chemical binding]; other site
862908011485	dimerization interface [polypeptide binding]; other site
862908011486	allosteric effector site; other site
862908011487	fructose-1,6-bisphosphate binding site; other site
862908011488	HMMPfam hit to PF00365, Phosphofructokinase, score 3.9e-134
862908011489	Mg chelatase-related protein; Region: TIGR00368
862908011490	Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad...; Region: Tryp_SPc; cl00149
862908011491	active site
862908011492	Signal peptide predicted for BMS3043 by SignalP 2.0 HMM (Signal peptide probability 0.975) with cleavage site probability 0.560 between residues 21 and 22
862908011493	PS00134 Serine proteases, trypsin family, histidine active site.
862908011494	Signal peptide predicted for BMS3044 by SignalP 2.0 HMM (Signal peptide probability 0.795) with cleavage site probability 0.766 between residues 21 and 22
862908011495	Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]; Region: GdhA; COG0334
862908011496	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Region: ELFV_dehydrog_N; pfam02812
862908011497	NAD(P) binding domain of glutamate dehydrogenase, subgroup 1; Region: NAD_bind_1_Glu_DH; cd01076
862908011498	NAD(P) binding site [chemical binding]; other site
862908011499	HMMPfam hit to PF00208, Glu/Leu/Phe/Val dehydrogenase, C terminal, score 1.7e-92
862908011500	HMMPfam hit to PF02812, Glu/Leu/Phe/Val dehydrogenase, dimerisation region, score 3.1e-70
862908011501	PS00074 Glu / Leu / Phe / Val dehydrogenases active site.
862908011502	bacteriophage N4 receptor, outer membrane subunit; Provisional; Region: PRK09782
862908011503	ParB/RepB/Spo0J family partition protein; Region: parB_part; TIGR00180
862908011504	ParB-like nuclease domain; Region: ParB; smart00470
862908011505	HMMPfam hit to PF02195, ParB-like nuclease, score 1.9e-17
862908011506	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
862908011507	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
862908011508	P-loop; other site
862908011509	Magnesium ion binding site [ion binding]; other site
862908011510	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
862908011511	Magnesium ion binding site [ion binding]; other site
862908011512	HMMPfam hit to PF01656, Cobyrinic acid a,c-diamide synthase, score 2.7e-29
862908011513	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
862908011514	active site residue [active]
862908011515	HMMPfam hit to PF00581, Rhodanese-like, score 3.1e-15
862908011516	quinolinate synthetase; Provisional; Region: PRK09375
862908011517	HMMPfam hit to PF02445, Quinolinate synthetase A, score 2.3e-120
862908011518	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
862908011519	cysteine desulfurase NifS; Region: FeS_nifS; TIGR03402
862908011520	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
862908011521	catalytic residue [active]
862908011522	HMMPfam hit to PF00266, Aminotransferase, class V, score 2.1e-31
862908011523	PS00626 Regulator of chromosome condensation (RCC1) signature 2.
862908011524	PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site.
862908011525	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
862908011526	active site
862908011527	metal binding site [ion binding]; metal-binding site
862908011528	Signal peptide predicted for BMS3055 by SignalP 2.0 HMM (Signal peptide probability 0.977) with cleavage site probability 0.394 between residues 32 and 33
862908011529	PrkA AAA domain; Region: AAA_PrkA; smart00763
862908011530	AAA ATPase domain; Region: AAA_16; pfam13191
862908011531	PrkA serine protein kinase C-terminal domain; Region: PrkA; pfam06798
862908011532	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
862908011533	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
862908011534	RNA binding surface [nucleotide binding]; other site
862908011535	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
862908011536	active site
862908011537	HMMPfam hit to PF00849, Pseudouridine synthase, score 4.2e-25
862908011538	PS01129 Rlu family of pseudouridine synthase signature.
862908011539	Predicted hydrolases of the HAD superfamily [General function prediction only]; Region: Cof; COG0561
862908011540	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
862908011541	active site
862908011542	motif I; other site
862908011543	motif II; other site
862908011544	PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site.
862908011545	Signal peptide predicted for BMS3059 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.985 between residues 24 and 25
862908011546	Retinal pigment epithelial membrane protein; Region: RPE65; pfam03055
862908011547	Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]; Region: COG3670
862908011548	HMMPfam hit to PF03055, Retinal pigment epithelial membrane protein, score 6.3e-52
862908011549	Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PilT; COG2805
862908011550	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
862908011551	ATP binding site [chemical binding]; other site
862908011552	Walker B motif; other site
862908011553	HMMPfam hit to PF00437, Bacterial type II secretion system protein E, score 1.1e-16
862908011554	PS00662 Bacterial type II secretion system protein E signature.
862908011555	PS00017 ATP/GTP-binding site motif A (P-loop).
862908011556	3 probable transmembrane helices predicted for BMS3066 by TMHMM2.0 at aa 10-32, 55-77 and 87-109
862908011557	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2268
862908011558	Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin.  These two proteins are lipid raft-associated.  Individual proteins of...; Region: Band_7_flotillin; cd03399
862908011559	APO RNA-binding; Region: APO_RNA-bind; cl10644
862908011560	2 probable transmembrane helices predicted for BMS3067 by TMHMM2.0 at aa 5-27 and 40-62
862908011561	HMMPfam hit to PF01145, Band 7 protein, score 5.4e-17
862908011562	ABC-2 family transporter protein; Region: ABC2_membrane_2; cl17866
862908011563	ABC-2 family transporter protein; Region: ABC2_membrane_3; pfam12698
862908011564	7 probable transmembrane helices predicted for BMS3068 by TMHMM2.0 at aa 24-41, 45-67, 88-110, 120-142, 147-169, 199-221 and 238-260
862908011565	ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131
862908011566	ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; Region: ABC_DR_subfamily_A; cd03230
862908011567	Walker A/P-loop; other site
862908011568	ATP binding site [chemical binding]; other site
862908011569	Q-loop/lid; other site
862908011570	ABC transporter signature motif; other site
862908011571	Walker B; other site
862908011572	D-loop; other site
862908011573	H-loop/switch region; other site
862908011574	HMMPfam hit to PF00005, ABC transporter, score 3.1e-49
862908011575	PS00017 ATP/GTP-binding site motif A (P-loop).
862908011576	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
862908011577	Transcriptional regulators [Transcription]; Region: Lrp; COG1522
862908011578	putative DNA binding site [nucleotide binding]; other site
862908011579	putative Zn2+ binding site [ion binding]; other site
862908011580	AsnC family; Region: AsnC_trans_reg; pfam01037
862908011581	HMMPfam hit to PF01037, Bacterial regulatory proteins, AsnC/Lrp, score 1.2e-37
862908011582	PS00519 Bacterial regulatory proteins, asnC family signature.
862908011583	Putative threonine efflux protein [Amino acid transport and metabolism]; Region: RhtB; COG1280
862908011584	5 probable transmembrane helices predicted for BMS3071 by TMHMM2.0 at aa 7-29, 39-61, 64-86, 142-164 and 177-196
862908011585	HMMPfam hit to PF01810, Lysine exporter protein (LYSE/YGGA), score 1.6e-06
862908011586	Transcriptional regulator [Transcription]; Region: LysR; COG0583
862908011587	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908011588	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cd05466
862908011589	dimerization interface [polypeptide binding]; other site
862908011590	HMMPfam hit to PF03466, LysR, substrate-binding, score 2.2e-08
862908011591	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 4.8e-09
862908011592	1 probable transmembrane helix predicted for BMS3073 by TMHMM2.0 at aa 5-27
862908011593	This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as...; Region: NfsA_FRP; cd02146
862908011594	dimer interface [polypeptide binding]; other site
862908011595	FMN binding site [chemical binding]; other site
862908011596	NADPH bind site [chemical binding]; other site
862908011597	HMMPfam hit to PF00881, Nitroreductase, score 1.1e-38
862908011598	Na+/H+ antiporter family; Region: Na_H_antiporter; pfam03553
862908011599	HMMPfam hit to PF03553, Na+/H+ antiporter NhaC, score 8.1e-36
862908011600	10 probable transmembrane helices predicted for BMS3075 by TMHMM2.0 at aa 7-29, 39-58, 79-101, 121-143, 201-220, 230-252, 254-276, 335-357, 377-399 and 409-431
862908011601	Protein of unknown function (DUF1428); Region: DUF1428; pfam07237
862908011602	HMMPfam hit to PF07237, Protein of unknown function DUF1428, score 3.3e-60
862908011603	Beta-lactamase enzyme family; Region: Beta-lactamase2; pfam13354
862908011604	Signal peptide predicted for BMS3078 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.588 between residues 18 and 19
862908011605	PS00261 Glycoprotein hormones beta chain signature 1.
862908011606	1 probable transmembrane helix predicted for BMS3080 by TMHMM2.0 at aa 20-38
862908011607	YceI-like domain; Region: YceI; pfam04264
862908011608	Signal peptide predicted for BMS3081 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.995 between residues 18 and 19
862908011609	1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]; Region: PlsC; COG0204
862908011610	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374; Region: LPLAT_DUF374-like; cd07983
862908011611	putative acyl-acceptor binding pocket; other site
862908011612	HMMPfam hit to PF01553, Phospholipid/glycerol acyltransferase, score 0.0025
862908011613	HMMPfam hit to PF04028, Protein of unknown function DUF374, score 1.1e-13
862908011614	Protein of unknown function (DUF2288); Region: DUF2288; cl02399
862908011615	Protein of unknown function (DUF1499); Region: DUF1499; cl01841
862908011616	Signal peptide predicted for BMS3084 by SignalP 2.0 HMM (Signal peptide probability 0.877) with cleavage site probability 0.611 between residues 21 and 22
862908011617	Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]; Region: PaaY; COG0663
862908011618	Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon...; Region: LbH_gamma_CA_like; cd04645
862908011619	trimer interface [polypeptide binding]; other site
862908011620	putative metal binding site [ion binding]; other site
862908011621	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 0.45
862908011622	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 9.9
862908011623	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 7.7
862908011624	HMMPfam hit to PF00132, Bacterial transferase hexapeptide repeat, score 27
862908011625	HMMPfam hit to PF00034, Cytochrome c, class I, score 0.00017
862908011626	PS00190 Cytochrome c family heme-binding site signature.
862908011627	Signal peptide predicted for BMS3086 by SignalP 2.0 HMM (Signal peptide probability 0.963) with cleavage site probability 0.872 between residues 18 and 19
862908011628	Possible lysine decarboxylase; Region: Lysine_decarbox; cl00695
862908011629	HMMPfam hit to PF03641, Conserved hypothetical protein 730, score 1.2e-48
862908011630	Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: COG1189
862908011631	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
862908011632	RNA binding surface [nucleotide binding]; other site
862908011633	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908011634	S-adenosylmethionine binding site [chemical binding]; other site
862908011635	HMMPfam hit to PF01728, Ribosomal RNA methyltransferase RrmJ/FtsJ, score 1.7e-08
862908011636	HMMPfam hit to PF01479, RNA-binding S4, score 3.1e-08
862908011637	Signal peptide predicted for BMS3088 by SignalP 2.0 HMM (Signal peptide probability 0.737) with cleavage site probability 0.716 between residues 21 and 22
862908011638	1 probable transmembrane helix predicted for BMS3089 by TMHMM2.0 at aa 10-32
862908011639	Signal peptide predicted for BMS3089 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.993 between residues 24 and 25
862908011640	VanZ like family; Region: VanZ; cl01971
862908011641	3 probable transmembrane helices predicted for BMS3090 by TMHMM2.0 at aa 4-26, 64-86 and 96-118
862908011642	HMMPfam hit to PF04892, VanZ like protein, score 1.4e-07
862908011643	diaminopimelate epimerase; Provisional; Region: dapF; PRK00450
862908011644	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
862908011645	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
862908011646	HMMPfam hit to PF01678, Diaminopimelate epimerase, score 7.8e-28
862908011647	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908011648	HMMPfam hit to PF01678, Diaminopimelate epimerase, score 1.1e-19
862908011649	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
862908011650	non-specific DNA binding site [nucleotide binding]; other site
862908011651	salt bridge; other site
862908011652	sequence-specific DNA binding site [nucleotide binding]; other site
862908011653	HMMPfam hit to PF01381, Helix-turn-helix motif, score 1.5e-15
862908011654	Phage regulatory protein Rha (Phage_pRha); Region: Phage_pRha; cl10713
862908011655	PS00011 Vitamin K-dependent carboxylation domain.
862908011656	Cupin domain; Region: Cupin_2; cl17218
862908011657	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
862908011658	active site
862908011659	HMMPfam hit to PF02348, Acylneuraminate cytidylyltransferase, score 1.7e-09
862908011660	Protein of unknown function, DUF462; Region: DUF462; pfam04315
862908011661	HMMPfam hit to PF04315, Protein of unknown function DUF462, score 7.1e-46
862908011662	GDSL-like Lipase/Acylhydrolase family; Region: Lipase_GDSL_2; pfam13472
862908011663	oxyanion hole [active]
862908011664	SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely...; Region: SGNH_hydrolase; cl01053
862908011665	catalytic triad [active]
862908011666	PS00017 ATP/GTP-binding site motif A (P-loop).
862908011667	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908011668	FeS/SAM binding site; other site
862908011669	Domain of unknown function (DUF4008); Region: DUF4008; pfam13186
862908011670	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399
862908011671	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
862908011672	inhibitor-cofactor binding pocket; inhibition site
862908011673	pyridoxal 5'-phosphate binding site [chemical binding]; other site
862908011674	catalytic residue [active]
862908011675	HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS aminotransferase, score 4.1e-72
862908011676	PS01305 moaA / nifB / pqqE family signature.
862908011677	Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]; Region: Tdh; COG1063
862908011678	Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; Region: MDR; cd05188
862908011679	NAD(P) binding site [chemical binding]; other site
862908011680	HMMPfam hit to PF00107, Zinc-containing alcohol dehydrogenase superfamily, score 7.8e-32
862908011681	PS00059 Zinc-containing alcohol dehydrogenases signature.
862908011682	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908011683	Radical SAM superfamily; Region: Radical_SAM; pfam04055
862908011684	FeS/SAM binding site; other site
862908011685	HMMPfam hit to PF04055, Radical SAM, score 3.5e-19
862908011686	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908011687	Radical SAM superfamily; Region: Radical_SAM; pfam04055
862908011688	FeS/SAM binding site; other site
862908011689	Domain of unknown function (DUF4008); Region: DUF4008; pfam13186
862908011690	HMMPfam hit to PF04055, Radical SAM, score 1.8e-16
862908011691	Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases); Region: nitrilase_Rim1_like; cd07574
862908011692	Predicted amidohydrolase [General function prediction only]; Region: COG0388
862908011693	putative active site [active]
862908011694	catalytic triad [active]
862908011695	putative dimer interface [polypeptide binding]; other site
862908011696	HMMPfam hit to PF00795, Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, score 1.9e-17
862908011697	Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins; Region: START; cd00177
862908011698	lipid binding site [chemical binding]; lipid-binding site
862908011699	Signal peptide predicted for BMS3110 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.907 between residues 18 and 19
862908011700	11 probable transmembrane helices predicted for BMS3112 by TMHMM2.0 at aa 7-26, 113-135, 142-159, 198-220, 233-250, 277-299, 311-333, 337-359, 366-385, 428-446 and 458-480
862908011701	PS01222 PMP-22 / EMP / MP20 family signature 2.
862908011702	Signal peptide predicted for BMS3112 by SignalP 2.0 HMM (Signal peptide probability 0.972) with cleavage site probability 0.519 between residues 25 and 26
862908011703	9 probable transmembrane helices predicted for BMS3113 by TMHMM2.0 at aa 16-38, 130-152, 159-181, 211-233, 240-262, 318-340, 347-364, 374-393 and 402-424
862908011704	Protein of unknown function (DUF1585); Region: PSD2; pfam07624
862908011705	Signal peptide predicted for BMS3116 by SignalP 2.0 HMM (Signal peptide probability 0.666) with cleavage site probability 0.276 between residues 32 and 33
862908011706	PS00190 Cytochrome c family heme-binding site signature.
862908011707	PS00190 Cytochrome c family heme-binding site signature.
862908011708	GDSL-like Lipase/Acylhydrolase family; Region: Lipase_GDSL_2; pfam13472
862908011709	active site
862908011710	oxyanion hole [active]
862908011711	SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely...; Region: SGNH_hydrolase; cl01053
862908011712	catalytic triad [active]
862908011713	1 probable transmembrane helix predicted for BMS3117 by TMHMM2.0 at aa 7-29
862908011714	Signal peptide predicted for BMS3118 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.571 between residues 20 and 21
862908011715	C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some...; Region: Peptidase_C1; cl00298
862908011716	active site
862908011717	C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some...; Region: Peptidase_C1; cl00298
862908011718	active site
862908011719	RnfH family Ubiquitin; Region: Ub-RnfH; cl17382
862908011720	GDSL-like Lipase/Acylhydrolase family; Region: Lipase_GDSL_2; pfam13472
862908011721	active site
862908011722	oxyanion hole [active]
862908011723	SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely...; Region: SGNH_hydrolase; cl01053
862908011724	catalytic triad [active]
862908011725	1 probable transmembrane helix predicted for BMS3120 by TMHMM2.0 at aa 21-43
862908011726	Domain of unknown function (DUF4008); Region: DUF4008; pfam13186
862908011727	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908011728	FeS/SAM binding site; other site
862908011729	HMMPfam hit to PF04055, Radical SAM, score 1.2e-08
862908011730	PS01305 moaA / nifB / pqqE family signature.
862908011731	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399
862908011732	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
862908011733	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
862908011734	catalytic residue [active]
862908011735	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
862908011736	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399
862908011737	HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS aminotransferase, score 1.3e-10
862908011738	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
862908011739	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399
862908011740	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
862908011741	catalytic residue [active]
862908011742	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908011743	Radical SAM superfamily; Region: Radical_SAM; pfam04055
862908011744	FeS/SAM binding site; other site
862908011745	HMMPfam hit to PF04055, Radical SAM, score 3.9e-16
862908011746	DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily; Region: DPM_DPG-synthase_like; cd04179
862908011747	Ligand binding site; other site
862908011748	Putative Catalytic site; other site
862908011749	DXD motif; other site
862908011750	HMMPfam hit to PF00535, Glycosyl transferase, family 2, score 1e-16
862908011751	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908011752	Radical SAM superfamily; Region: Radical_SAM; pfam04055
862908011753	FeS/SAM binding site; other site
862908011754	1 probable transmembrane helix predicted for BMS3126 by TMHMM2.0 at aa 12-34
862908011755	HMMPfam hit to PF04055, Radical SAM, score 4.7e-15
862908011756	1 probable transmembrane helix predicted for BMS3127 by TMHMM2.0 at aa 15-32
862908011757	Dolichyl-phosphate-mannose-protein mannosyltransferase; Region: PMT_2; pfam13231
862908011758	8 probable transmembrane helices predicted for BMS3128 by TMHMM2.0 at aa 20-42, 94-113, 118-140, 182-204, 216-238, 253-271, 280-302 and 306-328
862908011759	Tetratricopeptide repeat; Region: TPR_16; pfam13432
862908011760	PS00226 Intermediate filaments signature.
862908011761	11 probable transmembrane helices predicted for BMS3129 by TMHMM2.0 at aa 13-35, 82-104, 117-139, 143-162, 169-191, 211-230, 237-256, 276-298, 305-327, 337-354 and 359-381
862908011762	Signal peptide predicted for BMS3129 by SignalP 2.0 HMM (Signal peptide probability 0.980) with cleavage site probability 0.658 between residues 27 and 28
862908011763	Chaperone of endosialidase; Region: Peptidase_S74; pfam13884
862908011764	Coenzyme PQQ synthesis protein D (PqqD); Region: PqqD; cl05126
862908011765	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908011766	4Fe-4S single cluster domain; Region: Fer4_14; pfam13394
862908011767	FeS/SAM binding site; other site
862908011768	HMMPfam hit to PF04055, Radical SAM, score 7.2e-06
862908011769	Type IV pilin N-term methylation site GFxxxE; Region: N_methyl_2; pfam13544
862908011770	1 probable transmembrane helix predicted for BMS3133 by TMHMM2.0 at aa 13-35
862908011771	Radical SAM superfamily; Region: Radical_SAM; pfam04055
862908011772	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908011773	FeS/SAM binding site; other site
862908011774	HMMPfam hit to PF04055, Radical SAM, score 8.1e-09
862908011775	cupin fold metalloprotein, WbuC family; Region: cupin_WbuC; TIGR04366
862908011776	extended (e) SDRs; Region: SDR_e; cd08946
862908011777	NAD(P) binding site [chemical binding]; other site
862908011778	active site
862908011779	substrate binding site [chemical binding]; other site
862908011780	Thioredoxin; Region: Thioredoxin_4; cl17273
862908011781	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908011782	Signal peptide predicted for BMS3137 by SignalP 2.0 HMM (Signal peptide probability 0.986) with cleavage site probability 0.876 between residues 31 and 32
862908011783	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
862908011784	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
862908011785	HMMPfam hit to PF00534, Glycosyl transferase, group 1, score 3.2e-09
862908011786	Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: HisS; COG0124
862908011787	ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: TagH; COG1134
862908011788	ATP-binding cassette component of polysaccharide transport system; Region: ABC_KpsT_Wzt; cd03220
862908011789	Walker A/P-loop; other site
862908011790	ATP binding site [chemical binding]; other site
862908011791	Q-loop/lid; other site
862908011792	ABC transporter signature motif; other site
862908011793	Walker B; other site
862908011794	D-loop; other site
862908011795	H-loop/switch region; other site
862908011796	HMMPfam hit to PF00005, ABC transporter, score 3.3e-31
862908011797	PS00211 ABC transporters family signature.
862908011798	PS00017 ATP/GTP-binding site motif A (P-loop).
862908011799	ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: TagG; COG1682
862908011800	ABC-2 type transporter; Region: ABC2_membrane; pfam01061
862908011801	6 probable transmembrane helices predicted for BMS3142 by TMHMM2.0 at aa 29-51, 61-83, 104-126, 136-158, 171-193 and 224-246
862908011802	HMMPfam hit to PF01061, ABC-2, score 2.4e-13
862908011803	PS00890 ABC-2 type transport system integral membrane proteins signature.
862908011804	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
862908011805	Catalytic site [active]
862908011806	HMMPfam hit to PF00717, Peptidase S24, S26A and S26B, score 0.0015
862908011807	Domain of unknown function (DUF4008); Region: DUF4008; pfam13186
862908011808	Predicted Fe-S oxidoreductases [General function prediction only]; Region: COG0535
862908011809	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908011810	FeS/SAM binding site; other site
862908011811	HMMPfam hit to PF04055, Radical SAM, score 5.8e-11
862908011812	PS00190 Cytochrome c family heme-binding site signature.
862908011813	Radical SAM superfamily; Region: Radical_SAM; pfam04055
862908011814	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908011815	FeS/SAM binding site; other site
862908011816	Domain of unknown function (DUF4008); Region: DUF4008; pfam13186
862908011817	HMMPfam hit to PF04055, Radical SAM, score 5.4e-06
862908011818	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
862908011819	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
862908011820	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
862908011821	HMMPfam hit to PF00534, Glycosyl transferase, group 1, score 4.8e-05
862908011822	Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]; Region: COG2192
862908011823	Carbamoyltransferase; Region: CmcH_NodU; pfam02543
862908011824	HMMPfam hit to PF02543, Carbamoyltransferase, score 7.7e-35
862908011825	Signal peptide predicted for BMS3147 by SignalP 2.0 HMM (Signal peptide probability 0.610) with cleavage site probability 0.339 between residues 24 and 25
862908011826	sporadic carbohydrate cluster protein, LIC12192 family; Region: SpoChoClust_1; TIGR04323
862908011827	Methyltransferase domain; Region: Methyltransf_31; pfam13847
862908011828	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
862908011829	S-adenosylmethionine binding site [chemical binding]; other site
862908011830	sporadic carbohydrate cluster 2OG-Fe(II) oxygenase; Region: SpoChoClust_2; TIGR04324
862908011831	Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]; Region: COG3958
862908011832	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
862908011833	PYR/PP interface [polypeptide binding]; other site
862908011834	dimer interface [polypeptide binding]; other site
862908011835	TPP binding site [chemical binding]; other site
862908011836	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
862908011837	HMMPfam hit to PF02780, Transketolase, C terminal, score 9.9e-07
862908011838	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature.
862908011839	HMMPfam hit to PF02779, Transketolase, central region, score 3.3e-14
862908011840	Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the...; Region: TPP_TK; cd02012
862908011841	TPP-binding site [chemical binding]; other site
862908011842	dimer interface [polypeptide binding]; other site
862908011843	HMMPfam hit to PF00456, Transketolase, N terminal, score 3.1e-15
862908011844	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
862908011845	extended (e) SDRs; Region: SDR_e; cd08946
862908011846	NAD(P) binding site [chemical binding]; other site
862908011847	active site
862908011848	substrate binding site [chemical binding]; other site
862908011849	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908011850	HMMPfam hit to PF01370, NAD-dependent epimerase/dehydratase, score 3.7e-14
862908011851	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
862908011852	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908011853	NAD(P) binding site [chemical binding]; other site
862908011854	active site
862908011855	HMMPfam hit to PF01370, NAD-dependent epimerase/dehydratase, score 6.7e-65
862908011856	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
862908011857	active site
862908011858	nucleotide binding site [chemical binding]; other site
862908011859	HIGH motif; other site
862908011860	KMSKS motif; other site
862908011861	HMMPfam hit to PF01467, Cytidylyltransferase, score 8.4e-06
862908011862	This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC). These 2 families differ in that EPT is formed by 3 repeats of an alpha-beta structural domain while  RTPC has 3 similar repeats...; Region: EPT_RTPC-like; cl00288
862908011863	3-phosphoshikimate 1-carboxyvinyltransferase; Region: aroA; TIGR01356
862908011864	putative active site [active]
862908011865	HMMPfam hit to PF00275, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase), score 3.1e-27
862908011866	Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis; Region: DHQS; cd08195
862908011867	active site
862908011868	dimer interface [polypeptide binding]; other site
862908011869	metal binding site [ion binding]; metal-binding site
862908011870	HMMPfam hit to PF01761, 3-dehydroquinate synthase, score 8.9e-79
862908011871	Chorismate synthase [Amino acid transport and metabolism]; Region: AroC; COG0082
862908011872	Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway; Region: Chorismate_synthase; cd07304
862908011873	Tetramer interface [polypeptide binding]; other site
862908011874	active site
862908011875	FMN-binding site [chemical binding]; other site
862908011876	HMMPfam hit to PF01264, Chorismate synthase, score 9.7e-118
862908011877	PS00789 Chorismate synthase signature 3.
862908011878	PS00788 Chorismate synthase signature 2.
862908011879	Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]; Region: COG1579
862908011880	Putative zinc ribbon domain; Region: DUF164; pfam02591
862908011881	HMMPfam hit to PF02591, Protein of unknown function DUF164, score 4.5e-05
862908011882	Outer membrane efflux protein; Region: OEP; pfam02321
862908011883	HMMPfam hit to PF02321, Outer membrane efflux protein, score 4.3e-05
862908011884	Signal peptide predicted for BMS3162 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.923 between residues 19 and 20
862908011885	A/G-specific DNA glycosylase [DNA replication, recombination, and repair]; Region: MutY; COG1194
862908011886	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
862908011887	minor groove reading motif; other site
862908011888	helix-hairpin-helix signature motif; other site
862908011889	substrate binding pocket [chemical binding]; other site
862908011890	active site
862908011891	HMMPfam hit to PF00730, HhH-GPD, score 3.5e-16
862908011892	HMMPfam hit to PF00633, Helix-hairpin-helix motif, score 2.9e-06
862908011893	Signal peptide predicted for BMS3164 by SignalP 2.0 HMM (Signal peptide probability 0.987) with cleavage site probability 0.985 between residues 17 and 18
862908011894	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093
862908011895	non-specific DNA binding site [nucleotide binding]; other site
862908011896	salt bridge; other site
862908011897	Predicted transcriptional regulators [Transcription]; Region: HipB; COG1396
862908011898	sequence-specific DNA binding site [nucleotide binding]; other site
862908011899	HMMPfam hit to PF01381, Helix-turn-helix motif, score 2.2e-05
862908011900	Pentapeptide repeats (9 copies); Region: Pentapeptide_4; pfam13599
862908011901	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
862908011902	L-aspartate oxidase; Provisional; Region: PRK06175
862908011903	Aspartate oxidase [Coenzyme metabolism]; Region: NadB; COG0029
862908011904	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
862908011905	HMMPfam hit to PF00890, Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal, score 3e-130
862908011906	Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]; Region: NadC; COG0157
862908011907	Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with...; Region: QPRTase; cd01572
862908011908	dimerization interface [polypeptide binding]; other site
862908011909	active site
862908011910	HMMPfam hit to PF01729, Quinolinate phosphoribosyl transferase, score 3.2e-61
862908011911	8 probable transmembrane helices predicted for BMS3171 by TMHMM2.0 at aa 7-26, 84-106, 119-138, 158-177, 186-208, 212-234, 241-263 and 278-300
862908011912	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908011913	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908011914	ATP binding site [chemical binding]; other site
862908011915	Mg2+ binding site [ion binding]; other site
862908011916	G-X-G motif; other site
862908011917	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 3.6e-24
862908011918	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 0.0049
862908011919	2 probable transmembrane helices predicted for BMS3173 by TMHMM2.0 at aa 10-32 and 139-161
862908011920	Signal peptide predicted for BMS3173 by SignalP 2.0 HMM (Signal peptide probability 0.748) with cleavage site probability 0.459 between residues 32 and 33
862908011921	The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like; cl01709
862908011922	Bacterial extracellular solute-binding proteins, family 5 Middle; Region: SBP_bac_5; pfam00496
862908011923	HMMPfam hit to PF00496, Bacterial extracellular solute-binding protein, family 5, score 0.00011
862908011924	Signal peptide predicted for BMS3174 by SignalP 2.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.740 between residues 26 and 27
862908011925	HEXXH motif domain; Region: mod_HExxH; TIGR04267
862908011926	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908011927	NAD(P) binding site [chemical binding]; other site
862908011928	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
862908011929	active site
862908011930	Signal peptide predicted for BMS3177 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 20 and 21
862908011931	pyruvate dehydrogenase E1 component alpha subunit; Reviewed; Region: odpA; CHL00149
862908011932	Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain...; Region: TPP_E1_PDC_ADC_BCADC; cd02000
862908011933	TPP-binding site [chemical binding]; other site
862908011934	tetramer interface [polypeptide binding]; other site
862908011935	heterodimer interface [polypeptide binding]; other site
862908011936	phosphorylation loop region [posttranslational modification]
862908011937	Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]; Region: AcoB; COG0022
862908011938	Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins; Region: TPP_PYR_E1-PDHc-beta_like; cd07036
862908011939	alpha subunit interface [polypeptide binding]; other site
862908011940	TPP binding site [chemical binding]; other site
862908011941	heterodimer interface [polypeptide binding]; other site
862908011942	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
862908011943	HMMPfam hit to PF02780, Transketolase, C terminal, score 5.6e-39
862908011944	HMMPfam hit to PF02779, Transketolase, central region, score 4.6e-52
862908011945	HMMPfam hit to PF00676, Dehydrogenase, E1 component, score 5.1e-40
862908011946	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908011947	Outer membrane protein transport protein (OMPP1/FadL/TodX); Region: Toluene_X; cl17479
862908011948	Signal peptide predicted for BMS3180 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.998 between residues 26 and 27
862908011949	Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]; Region: GdhA; COG0334
862908011950	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Region: ELFV_dehydrog_N; pfam02812
862908011951	NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase; Region: NAD_bind_Leu_Phe_Val_DH; cd01075
862908011952	NAD binding site [chemical binding]; other site
862908011953	Phe binding site; other site
862908011954	HMMPfam hit to PF00208, Glu/Leu/Phe/Val dehydrogenase, C terminal, score 2.5e-37
862908011955	HMMPfam hit to PF02812, Glu/Leu/Phe/Val dehydrogenase, dimerisation region, score 1.3e-53
862908011956	PS00074 Glu / Leu / Phe / Val dehydrogenases active site.
862908011957	Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633
862908011958	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
862908011959	catalytic loop [active]
862908011960	iron binding site [ion binding]; other site
862908011961	HMMPfam hit to PF00111, Ferredoxin, score 1.4e-09
862908011962	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature.
862908011963	Signal peptide predicted for BMS3183 by SignalP 2.0 HMM (Signal peptide probability 0.992) with cleavage site probability 0.800 between residues 15 and 16
862908011964	Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]; Region: TrxB; COG0492
862908011965	HMMPfam hit to PF00070, FAD-dependent pyridine nucleotide-disulphide oxidoreductase, score 3e-11
862908011966	Hemolysins and related proteins containing CBS domains [General function prediction only]; Region: TlyC; COG1253
862908011967	Domain of unknown function DUF21; Region: DUF21; pfam01595
862908011968	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
862908011969	Transporter associated domain; Region: CorC_HlyC; smart01091
862908011970	HMMPfam hit to PF03471, Transporter-associated region, score 3.5e-08
862908011971	HMMPfam hit to PF00571, CBS, score 1.5e-09
862908011972	HMMPfam hit to PF00571, CBS, score 1.9e-06
862908011973	HMMPfam hit to PF01595, Protein of unknown function DUF21, score 3e-38
862908011974	3 probable transmembrane helices predicted for BMS3185 by TMHMM2.0 at aa 49-71, 81-99 and 119-141
862908011975	1 probable transmembrane helix predicted for BMS3186 by TMHMM2.0 at aa 71-93
862908011976	8 probable transmembrane helices predicted for BMS3187 by TMHMM2.0 at aa 5-27, 39-61, 65-82, 89-106, 121-143, 155-174, 194-216 and 228-250
862908011977	Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+...; Region: Nudix_Hydrolase; cl00447
862908011978	nudix motif; other site
862908011979	HMMPfam hit to PF00293, NUDIX hydrolase, score 6e-10
862908011980	PS00893 mutT domain signature.
862908011981	tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]; Region: COG0042
862908011982	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
862908011983	FMN binding site [chemical binding]; other site
862908011984	active site
862908011985	catalytic residues [active]
862908011986	substrate binding site [chemical binding]; other site
862908011987	HMMPfam hit to PF01207, Dihydrouridine synthase, DuS, score 8.2e-39
862908011988	PS01136 Uncharacterized protein family UPF0034 signature.
862908011989	4 probable transmembrane helices predicted for BMS3190 by TMHMM2.0 at aa 7-29, 33-52, 65-87 and 102-124
862908011990	Signal peptide predicted for BMS3191 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.590 between residues 18 and 19
862908011991	Signal peptide predicted for BMS3192 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.964 between residues 18 and 19
862908011992	phosphodiesterase; Provisional; Region: PRK12704
862908011993	KH domain; Region: KH_1; pfam00013
862908011994	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cd00077
862908011995	Zn2+ binding site [ion binding]; other site
862908011996	Mg2+ binding site [ion binding]; other site
862908011997	HMMPfam hit to PF01966, Metal-dependent phosphohydrolase, HD subdomain, score 2.6e-20
862908011998	HMMPfam hit to PF00013, KH, type 1, score 5.2e-09
862908011999	PS00215 Mitochondrial energy transfer proteins signature.
862908012000	Signal peptide predicted for BMS3193 by SignalP 2.0 HMM (Signal peptide probability 0.843) with cleavage site probability 0.691 between residues 28 and 29
862908012001	1 probable transmembrane helix predicted for BMS3193 by TMHMM2.0 at aa 5-23
862908012002	5-formyltetrahydrofolate cyclo-ligase family; Region: 5-FTHF_cyc-lig; pfam01812
862908012003	5,10-methenyltetrahydrofolate synthetase; Region: MTHFS_bact; TIGR02727
862908012004	HMMPfam hit to PF01812, 5-formyltetrahydrofolate cyclo-ligase, score 5.5e-26
862908012005	Cell division protein ZapA; Region: ZapA; pfam05164
862908012006	signal recognition particle-docking protein FtsY; Provisional; Region: PRK10416
862908012007	The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115
862908012008	P loop; other site
862908012009	GTP binding site [chemical binding]; other site
862908012010	HMMPfam hit to PF00448, GTP-binding signal recognition particle SRP54, G-domain, score 2.2e-101
862908012011	PS00300 SRP54-type proteins GTP-binding domain signature.
862908012012	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012013	HMMPfam hit to PF02881, GTP-binding signal recognition particle SRP54, G-domain, score 5e-08
862908012014	1 probable transmembrane helix predicted for BMS3196 by TMHMM2.0 at aa 23-45
862908012015	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
862908012016	EF-P lysine aminoacylase GenX; Region: genX; TIGR00462
862908012017	motif 1; other site
862908012018	dimer interface [polypeptide binding]; other site
862908012019	active site
862908012020	motif 2; other site
862908012021	motif 3; other site
862908012022	HMMPfam hit to PF00152, tRNA synthetase, class II (D, K and N), score 4.6e-17
862908012023	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
862908012024	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
862908012025	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908012026	active site
862908012027	phosphorylation site [posttranslational modification]
862908012028	intermolecular recognition site; other site
862908012029	dimerization interface [polypeptide binding]; other site
862908012030	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908012031	Walker A motif; other site
862908012032	ATP binding site [chemical binding]; other site
862908012033	Walker B motif; other site
862908012034	arginine finger; other site
862908012035	HMMPfam hit to PF00158, Sigma-54 factor, interaction region, score 2.1e-103
862908012036	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
862908012037	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012038	HMMPfam hit to PF00072, Response regulator receiver, score 2.1e-17
862908012039	Putative Ig domain; Region: He_PIG; pfam05345
862908012040	ribosomal protein S12 methylthiotransferase RimO; Region: TIGR01125
862908012041	Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919
862908012042	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908012043	FeS/SAM binding site; other site
862908012044	TRAM domain; Region: TRAM; cl01282
862908012045	HMMPfam hit to PF01938, Deoxyribonuclease/rho motif-related TRAM, score 0.00052
862908012046	HMMPfam hit to PF04055, Radical SAM, score 1.3e-26
862908012047	PS01278 Uncharacterized protein family UPF0004 signature.
862908012048	HMMPfam hit to PF00919, Protein of unknown function UPF0004, score 6.9e-32
862908012049	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
862908012050	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
862908012051	N-acetyl-D-glucosamine binding site [chemical binding]; other site
862908012052	catalytic residue [active]
862908012053	Signal peptide predicted for BMS3205 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.467 between residues 21 and 22
862908012054	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908012055	HMMPfam hit to PF07719, , score 1.1; PF07719, Tetratricopeptide repeat
862908012056	HMMPfam hit to PF07719, , score 1.3; PF07719, Tetratricopeptide repeat
862908012057	HMMPfam hit to PF07719, , score 1.6; PF07719, Tetratricopeptide repeat
862908012058	HMMPfam hit to PF07719, , score 1.1; PF07719, Tetratricopeptide repeat
862908012059	HMMPfam hit to PF01464, SLT, score 8.3e-25
862908012060	Outer membrane lipoprotein carrier protein LolA; Region: LolA; cl17548
862908012061	Signal peptide predicted for BMS3206 by SignalP 2.0 HMM (Signal peptide probability 0.968) with cleavage site probability 0.608 between residues 35 and 36
862908012062	chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168
862908012063	ATP-binding cassette domain of barmotin, a member of the SMC protein family; Region: ABC_SMC_barmotin; cd03278
862908012064	Walker A/P-loop; other site
862908012065	ATP binding site [chemical binding]; other site
862908012066	SMC proteins Flexible Hinge Domain; Region: SMC_hinge; cl05797
862908012067	ATP-binding cassette domain of barmotin, a member of the SMC protein family; Region: ABC_SMC_barmotin; cd03278
862908012068	ABC transporter signature motif; other site
862908012069	Walker B; other site
862908012070	D-loop; other site
862908012071	H-loop/switch region; other site
862908012072	HMMPfam hit to PF02483, Structural maintenance of chromosome protein SMC, C-terminal, score 1.2e-80
862908012073	HMMPfam hit to PF02463, SMC protein, N-terminal, score 1.2e-65
862908012074	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012075	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012076	Four helix bundle sensory module for signal transduction; Region: 4HB_MCP_1; pfam12729
862908012077	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer); Region: MA; smart00283
862908012078	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
862908012079	dimer interface [polypeptide binding]; other site
862908012080	putative CheW interface [polypeptide binding]; other site
862908012081	Signal peptide predicted for BMS3208 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.413 between residues 43 and 44
862908012082	2 probable transmembrane helices predicted for BMS3208 by TMHMM2.0 at aa 12-34 and 196-218
862908012083	HMMPfam hit to PF00015, Bacterial chemotaxis sensory transducer, score 1.5e-39
862908012084	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
862908012085	HMMPfam hit to PF07719, , score 0.19; PF07719, Tetratricopeptide repeat
862908012086	Signal peptide predicted for BMS3209 by SignalP 2.0 HMM (Signal peptide probability 0.812) with cleavage site probability 0.801 between residues 27 and 28
862908012087	Signal peptide predicted for BMS3210 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.968 between residues 19 and 20
862908012088	hypothetical protein; Provisional; Region: PRK10318
862908012089	Signal peptide predicted for BMS3211 by SignalP 2.0 HMM (Signal peptide probability 0.995) with cleavage site probability 0.992 between residues 20 and 21
862908012090	PS00268 Cecropin family signature.
862908012091	Recombinase; Region: Recombinase; pfam07508
862908012092	1 probable transmembrane helix predicted for BMS3213 by TMHMM2.0 at aa 4-26
862908012093	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
862908012094	NAD(P) binding site [chemical binding]; other site
862908012095	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]; Region: FabG; COG1028
862908012096	active site
862908012097	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908012098	ribonucleoside transporter; Reviewed; Region: nepI; PRK10213
862908012099	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
862908012100	putative substrate translocation pore; other site
862908012101	12 probable transmembrane helices predicted for BMS3215 by TMHMM2.0 at aa 13-35, 50-72, 84-106, 110-132, 139-161, 171-190, 211-233, 248-267, 274-296, 301-323, 336-358 and 363-385
862908012102	HMMPfam hit to PF07690, , score 4.4e-43
862908012103	Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]; Region: COG2220
862908012104	Beta-lactamase superfamily domain; Region: Lactamase_B_2; pfam12706
862908012105	1 probable transmembrane helix predicted for BMS3216 by TMHMM2.0 at aa 7-29
862908012106	Hydrolases of the alpha/beta superfamily [General function prediction only]; Region: COG1073
862908012107	BAAT / Acyl-CoA thioester hydrolase C terminal; Region: BAAT_C; pfam08840
862908012108	Signal peptide predicted for BMS3217 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.500 between residues 25 and 26
862908012109	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908012110	Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064
862908012111	Cinnamyl alcohol dehydrogenases (CAD); Region: CAD1; cd05283
862908012112	putative NAD(P) binding site [chemical binding]; other site
862908012113	putative substrate binding site [chemical binding]; other site
862908012114	catalytic Zn binding site [ion binding]; other site
862908012115	structural Zn binding site [ion binding]; other site
862908012116	dimer interface [polypeptide binding]; other site
862908012117	HMMPfam hit to PF00107, Zinc-containing alcohol dehydrogenase superfamily, score 1.7e-112
862908012118	PS00059 Zinc-containing alcohol dehydrogenases signature.
862908012119	PS00190 Cytochrome c family heme-binding site signature.
862908012120	Transcriptional regulator [Transcription]; Region: LysR; COG0583
862908012121	Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126
862908012122	The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_5; cd08474
862908012123	putative effector binding pocket; other site
862908012124	putative dimerization interface [polypeptide binding]; other site
862908012125	HMMPfam hit to PF00126, Bacterial regulatory protein, LysR, score 9.5e-16
862908012126	PS00044 Bacterial regulatory proteins, lysR family signature.
862908012127	HMMPfam hit to PF03466, LysR, substrate-binding, score 2.1e-34
862908012128	NTPase/HAM1.  This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A...; Region: HAM1; cd00515
862908012129	active site
862908012130	dimerization interface [polypeptide binding]; other site
862908012131	HMMPfam hit to PF01725, Ham1-like protein, score 1e-38
862908012132	ribonuclease PH; Reviewed; Region: rph; PRK00173
862908012133	Ribonuclease PH; Region: RNase_PH_bact; cd11362
862908012134	hexamer interface [polypeptide binding]; other site
862908012135	active site
862908012136	HMMPfam hit to PF03725, 3' exoribonuclease, score 1.4e-11
862908012137	HMMPfam hit to PF01138, 3' exoribonuclease, score 3.9e-40
862908012138	Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]; Region: BirA; COG0340
862908012139	Biotin/lipoate A/B protein ligase family; Region: BPL_LplA_LipB; pfam03099
862908012140	HMMPfam hit to PF03099, Biotin/lipoate A/B protein ligase, score 4.8e-11
862908012141	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908012142	active site
862908012143	phosphorylation site [posttranslational modification]
862908012144	intermolecular recognition site; other site
862908012145	dimerization interface [polypeptide binding]; other site
862908012146	Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence...; Region: PP2Cc; cl00120
862908012147	active site
862908012148	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
862908012149	FOG: FHA domain [Signal transduction mechanisms]; Region: COG1716
862908012150	phosphopeptide binding site; other site
862908012151	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
862908012152	FOG: FHA domain [Signal transduction mechanisms]; Region: COG1716
862908012153	phosphopeptide binding site; other site
862908012154	HMMPfam hit to PF07719, , score 1.5; PF07719, Tetratricopeptide repeat
862908012155	HMMPfam hit to PF07719, , score 2.2; PF07719, Tetratricopeptide repeat
862908012156	HMMPfam hit to PF00498, Forkhead-associated, score 1.8e-13
862908012157	HMMPfam hit to PF00498, Forkhead-associated, score 7.3e-10
862908012158	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
862908012159	FOG: FHA domain [Signal transduction mechanisms]; Region: COG1716
862908012160	phosphopeptide binding site; other site
862908012161	HMMPfam hit to PF00498, Forkhead-associated, score 1.3e-12
862908012162	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
862908012163	FOG: FHA domain [Signal transduction mechanisms]; Region: COG1716
862908012164	phosphopeptide binding site; other site
862908012165	2 probable transmembrane helices predicted for BMS3227 by TMHMM2.0 at aa 155-177 and 321-343
862908012166	HMMPfam hit to PF00498, Forkhead-associated, score 4.7e-11
862908012167	Uncharacterized ACR, COG1430; Region: DUF192; pfam02643
862908012168	HMMPfam hit to PF02643, Protein of unknown function DUF192, score 1.2e-27
862908012169	Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]; Region: TadC; COG2064
862908012170	Type II secretion system (T2SS), protein F; Region: T2SF; pfam00482
862908012171	5 probable transmembrane helices predicted for BMS3229 by TMHMM2.0 at aa 5-27, 105-127, 201-223, 227-246 and 375-397
862908012172	HMMPfam hit to PF00482, Bacterial type II secretion system protein, score 9.1e-14
862908012173	Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]; Region: BglX; COG1472
862908012174	Glycosyl hydrolase family 3 N terminal domain; Region: Glyco_hydro_3; cl07971
862908012175	HMMPfam hit to PF00933, Glycoside hydrolase, family 3, N-terminal, score 1.6e-40
862908012176	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppC; COG1173
862908012177	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
862908012178	dimer interface [polypeptide binding]; other site
862908012179	conserved gate region; other site
862908012180	ABC-ATPase subunit interface; other site
862908012181	HMMPfam hit to PF00528, Binding-protein-dependent transport systems inner membrane component, score 4.3e-36
862908012182	6 probable transmembrane helices predicted for BMS3231 by TMHMM2.0 at aa 11-33, 82-104, 116-138, 142-159, 190-212 and 243-265
862908012183	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
862908012184	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; Region: DppB; COG0601
862908012185	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
862908012186	dimer interface [polypeptide binding]; other site
862908012187	conserved gate region; other site
862908012188	putative PBP binding loops; other site
862908012189	ABC-ATPase subunit interface; other site
862908012190	HMMPfam hit to PF00528, Binding-protein-dependent transport systems inner membrane component, score 5.6e-43
862908012191	6 probable transmembrane helices predicted for BMS3232 by TMHMM2.0 at aa 7-29, 99-121, 134-156, 171-188, 229-251 and 271-290
862908012192	Signal peptide predicted for BMS3233 by SignalP 2.0 HMM (Signal peptide probability 0.979) with cleavage site probability 0.285 between residues 20 and 21
862908012193	PS00037 Myb DNA-binding domain repeat signature 1.
862908012194	rod shape-determining protein MreB; Provisional; Region: PRK13927
862908012195	MreB and similar proteins; Region: MreB_like; cd10225
862908012196	nucleotide binding site [chemical binding]; other site
862908012197	Mg binding site [ion binding]; other site
862908012198	putative protofilament interaction site [polypeptide binding]; other site
862908012199	RodZ interaction site [polypeptide binding]; other site
862908012200	HMMPfam hit to PF06723, Cell shape determining protein MreB/Mrl, score 1e-221
862908012201	Phosphorylase superfamily; Region: PNP_UDP_1; cl00303
862908012202	HMMPfam hit to PF01048, Purine and other phosphorylases, family 1, score 1.7e-11
862908012203	Signal peptide predicted for BMS3236 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.669 between residues 53 and 54
862908012204	Phosphoenolpyruvate carboxylase; Region: PEPcase_2; cl17501
862908012205	1 probable transmembrane helix predicted for BMS3238 by TMHMM2.0 at aa 276-298
862908012206	Predicted glycosyltransferases [General function prediction only]; Region: COG1216
862908012207	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
862908012208	active site
862908012209	HMMPfam hit to PF00535, Glycosyl transferase, family 2, score 3e-12
862908012210	3 probable transmembrane helices predicted for BMS3239 by TMHMM2.0 at aa 233-255, 259-281 and 290-312
862908012211	TPR repeat; Region: TPR_11; pfam13414
862908012212	Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_1; cl10011
862908012213	Periplasmic binding protein; Region: Peripla_BP_6; pfam13458
862908012214	Signal peptide predicted for BMS3240 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.436 between residues 25 and 26
862908012215	Signal peptide predicted for BMS3241 by SignalP 2.0 HMM (Signal peptide probability 0.989) with cleavage site probability 0.409 between residues 16 and 17
862908012216	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908012217	chaperone protein DnaJ; Provisional; Region: PRK10767
862908012218	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
862908012219	HSP70 interaction site [polypeptide binding]; other site
862908012220	C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cl03262
862908012221	Zinc finger domain of DnaJ and HSP40; Region: DnaJ_zf; cd10719
862908012222	Zn binding sites [ion binding]; other site
862908012223	C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cd10747
862908012224	dimer interface [polypeptide binding]; other site
862908012225	HMMPfam hit to PF01556, Chaperone DnaJ, C-terminal, score 3e-72
862908012226	HMMPfam hit to PF00684, DnaJ central region, score 5.2e-34
862908012227	PS00190 Cytochrome c family heme-binding site signature.
862908012228	PS00637 CXXCXGXG dnaJ domain signature.
862908012229	PS00190 Cytochrome c family heme-binding site signature.
862908012230	HMMPfam hit to PF00226, Heat shock protein DnaJ, N-terminal, score 2.2e-36
862908012231	molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290
862908012232	Nucleotide-binding domain of human HSPA9 and similar proteins; Region: HSPA9-Ssq1-like_NBD; cd10234
862908012233	nucleotide binding site [chemical binding]; other site
862908012234	NEF interaction site [polypeptide binding]; other site
862908012235	SBD interface [polypeptide binding]; other site
862908012236	HMMPfam hit to PF00012, Heat shock protein Hsp70, score 0
862908012237	PS01036 Heat shock hsp70 proteins family signature 3.
862908012238	PS00329 Heat shock hsp70 proteins family signature 2.
862908012239	PS00297 Heat shock hsp70 proteins family signature 1.
862908012240	GrpE; Region: GrpE; pfam01025
862908012241	GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding; Region: GrpE; cd00446
862908012242	dimer interface [polypeptide binding]; other site
862908012243	hsp70 (ATPase domain) interactions [polypeptide binding]; other site
862908012244	HMMPfam hit to PF01025, GrpE protein, score 1.3e-56
862908012245	PS01071 grpE protein signature.
862908012246	Protein of unknown function (DUF2974); Region: DUF2974; pfam11187
862908012247	Signal peptide predicted for BMS3245 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.772 between residues 19 and 20
862908012248	1 probable transmembrane helix predicted for BMS3245 by TMHMM2.0 at aa 7-24
862908012249	Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]; Region: HemN; COG0635
862908012250	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
862908012251	FeS/SAM binding site; other site
862908012252	HMMPfam hit to PF06969, HemN, C-terminal, score 0.0037
862908012253	HMMPfam hit to PF04055, Radical SAM, score 4.7e-22
862908012254	Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612
862908012255	Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675
862908012256	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
862908012257	Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612
862908012258	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
862908012259	HMMPfam hit to PF00675, Insulinase-like, score 1.5e-31
862908012260	PS00143 Insulinase family, zinc-binding region signature.
862908012261	HMMPfam hit to PF05193, Peptidase M16, C-terminal, score 1.4e-22
862908012262	HMMPfam hit to PF05193, Peptidase M16, C-terminal, score 1.3e-25
862908012263	methylmalonyl-CoA mutase; Reviewed; Region: PRK09426
862908012264	Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Alpha subunit-like subfamily; contains proteins similar to the alpha subunit of Propionbacterium shermanni MCM, as well as human and E. coli MCM. Members of this subfamily contain...; Region: MM_CoA_mutase_alpha_like; cd03679
862908012265	active site
862908012266	substrate binding site [chemical binding]; other site
862908012267	coenzyme B12 binding site [chemical binding]; other site
862908012268	methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom...; Region: MM_CoA_mut_B12_BD; cd02071
862908012269	B12 binding site [chemical binding]; other site
862908012270	cobalt ligand [ion binding]; other site
862908012271	HMMPfam hit to PF01642, Methylmalonyl-CoA mutase, score 0
862908012272	PS00544 Methylmalonyl-CoA mutase signature.
862908012273	HMMPfam hit to PF02310, Coenzyme B12-binding, score 9.3e-25
862908012274	membrane ATPase/protein kinase; Provisional; Region: PRK09435
862908012275	The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and...; Region: ArgK-like; cd03114
862908012276	Walker A; other site
862908012277	HMMPfam hit to PF03308, ArgK protein, score 4.4e-136
862908012278	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012279	Signal peptide predicted for BMS3251 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 19 and 20
862908012280	1 probable transmembrane helix predicted for BMS3252 by TMHMM2.0 at aa 40-62
862908012281	PS01036 Heat shock hsp70 proteins family signature 3.
862908012282	Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]; Region: COG2192
862908012283	Carbamoyltransferase; Region: CmcH_NodU; pfam02543
862908012284	3 probable transmembrane helices predicted for BMS3253 by TMHMM2.0 at aa 626-643, 648-665 and 685-707
862908012285	HMMPfam hit to PF02543, Carbamoyltransferase, score 2.9e-137
862908012286	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908012287	Radical SAM superfamily; Region: Radical_SAM; pfam04055
862908012288	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cl15377
862908012289	FeS/SAM binding site; other site
862908012290	HMMPfam hit to PF04055, Radical SAM, score 0.0044
862908012291	GDSL-like Lipase/Acylhydrolase family; Region: Lipase_GDSL_2; pfam13472
862908012292	catalytic triad [active]
862908012293	1 probable transmembrane helix predicted for BMS3255 by TMHMM2.0 at aa 9-31
862908012294	HMMPfam hit to PF00657, Lipolytic enzyme, G-D-S-L, score 1.4e-05
862908012295	Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520
862908012296	Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS...; Region: SufS_like; cd06453
862908012297	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
862908012298	catalytic residue [active]
862908012299	HMMPfam hit to PF00266, Aminotransferase, class V, score 1.3e-08
862908012300	PS00245 Phytochrome chromophore attachment site signature.
862908012301	Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which  binds to Adenosine nucleotide; Region: AANH_like; cl00292
862908012302	Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]; Region: COG2117
862908012303	Ligand Binding Site [chemical binding]; other site
862908012304	PS00697 ATP-dependent DNA ligase AMP-binding site.
862908012305	Signal peptide predicted for BMS3260 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.890 between residues 18 and 19
862908012306	Signal peptide predicted for BMS3261 by SignalP 2.0 HMM (Signal peptide probability 0.945) with cleavage site probability 0.850 between residues 28 and 29
862908012307	1 probable transmembrane helix predicted for BMS3261 by TMHMM2.0 at aa 9-26
862908012308	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908012309	Metallo-beta-lactamase superfamily; Region: Lactamase_B; smart00849
862908012310	HMMPfam hit to PF00753, Beta-lactamase-like, score 3.1e-15
862908012311	Signal peptide predicted for BMS3262 by SignalP 2.0 HMM (Signal peptide probability 0.868) with cleavage site probability 0.855 between residues 16 and 17
862908012312	Predicted transcriptional regulators [Transcription]; Region: COG1733
862908012313	HxlR-like helix-turn-helix; Region: HxlR; pfam01638
862908012314	HMMPfam hit to PF01638, Protein of unknown function DUF24, score 4.9e-14
862908012315	Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]; Region: SUA5; COG0009
862908012316	HMMPfam hit to PF01300, SUA5/yciO/yrdC, N-terminal, score 6e-10
862908012317	HflC protein; Region: hflC; TIGR01932
862908012318	Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma...; Region: Band_7_HflC; cd03405
862908012319	HMMPfam hit to PF01145, Band 7 protein, score 6e-31
862908012320	Signal peptide predicted for BMS3266 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.996 between residues 20 and 21
862908012321	Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma...; Region: Band_7_HflK; cd03404
862908012322	HflK protein; Region: hflK; TIGR01933
862908012323	HMMPfam hit to PF01145, Band 7 protein, score 1.1e-35
862908012324	1 probable transmembrane helix predicted for BMS3267 by TMHMM2.0 at aa 29-51
862908012325	The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase; Region: biotinyl_domain; cd06850
862908012326	carboxyltransferase (CT) interaction site; other site
862908012327	biotinylation site [posttranslational modification]; other site
862908012328	HMMPfam hit to PF00364, Biotin/lipoyl attachment, score 5e-21
862908012329	acetyl-CoA carboxylase biotin carboxylase subunit; Validated; Region: PRK08591
862908012330	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
862908012331	ATP-grasp domain; Region: ATP-grasp_4; cl17255
862908012332	Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; pfam02785
862908012333	HMMPfam hit to PF02785, Biotin carboxylase, C-terminal, score 2.8e-32
862908012334	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain, ATP-binding, score 3.3e-95
862908012335	PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
862908012336	HMMPfam hit to PF00289, Carbamoyl-phosphate synthetase large chain, N-terminal, score 6.9e-31
862908012337	Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]; Region: COG4799
862908012338	malonate decarboxylase subunit beta; Reviewed; Region: PRK07189; cl17682
862908012339	Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]; Region: AccA; cl17345
862908012340	HMMPfam hit to PF01039, Carboxyl transferase, score 4.1e-269
862908012341	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908012342	psp operon transcriptional activator PspF; Region: phageshock_pspF; TIGR02974
862908012343	Walker A motif; other site
862908012344	ATP binding site [chemical binding]; other site
862908012345	Walker B motif; other site
862908012346	arginine finger; other site
862908012347	Bacterial regulatory protein, Fis family; Region: HTH_8; pfam02954
862908012348	HMMPfam hit to PF02954, Helix-turn-helix, Fis-type, score 1.1e-10
862908012349	PS00688 Sigma-54 interaction domain C-terminal part signature.
862908012350	HMMPfam hit to PF00158, Sigma-54 factor, interaction region, score 1.9e-139
862908012351	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
862908012352	periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily; Region: dsbE; TIGR00385
862908012353	TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a...; Region: TlpA_like_family; cd02966
862908012354	catalytic residues [active]
862908012355	PS00194 Thioredoxin family active site.
862908012356	1 probable transmembrane helix predicted for BMS3272 by TMHMM2.0 at aa 7-24
862908012357	Signal peptide predicted for BMS3272 by SignalP 2.0 HMM (Signal peptide probability 0.908) with cleavage site probability 0.505 between residues 19 and 20
862908012358	50S ribosomal protein L17; Validated; Region: rplQ; PRK05591
862908012359	HMMPfam hit to PF01196, Ribosomal protein L17, score 5.7e-50
862908012360	PS01167 Ribosomal protein L17 signature.
862908012361	DNA-directed RNA polymerase subunit alpha; Provisional; Region: PRK05182
862908012362	N-terminal domain of the Alpha subunit of Bacterial RNA polymerase; Region: RNAP_alpha_NTD; cd06928
862908012363	alphaNTD - beta interaction site [polypeptide binding]; other site
862908012364	alphaNTD homodimer interface [polypeptide binding]; other site
862908012365	alphaNTD - beta' interaction site [polypeptide binding]; other site
862908012366	Bacterial RNA polymerase, alpha chain C terminal domain; Region: RNA_pol_A_CTD; pfam03118
862908012367	HMMPfam hit to PF03118, RNA polymerase, alpha subunit, C-terminal, score 2.8e-24
862908012368	HMMPfam hit to PF01193, RNA polymerase, dimerisation, score 4.5e-17
862908012369	HMMPfam hit to PF01000, RNA polymerase, insert, score 4.1e-43
862908012370	30S ribosomal protein S11; Validated; Region: PRK05309
862908012371	HMMPfam hit to PF00411, Ribosomal protein S11, score 1.2e-57
862908012372	Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]; Region: RpsM; COG0099
862908012373	30S ribosomal protein S13; Region: bact_S13; TIGR03631
862908012374	HMMPfam hit to PF00416, Ribosomal protein S13, score 1.1e-48
862908012375	PS00646 Ribosomal protein S13 signature.
862908012376	Ribosomal protein L36; Region: Ribosomal_L36; pfam00444
862908012377	HMMPfam hit to PF00444, Ribosomal protein L36, score 3e-14
862908012378	PS00828 Ribosomal protein L36 signature.
862908012379	S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451
862908012380	rRNA binding site [nucleotide binding]; other site
862908012381	predicted 30S ribosome binding site; other site
862908012382	HMMPfam hit to PF00575, RNA binding S1, score 9.2e-08
862908012383	Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for...; Region: ADK; cd01428
862908012384	adenylate kinase; Reviewed; Region: adk; PRK00279
862908012385	AMP-binding site [chemical binding]; other site
862908012386	ATP-AMP (Ap5A)-binding site [chemical binding]; other site
862908012387	HMMPfam hit to PF00406, Adenylate kinase, score 4.2e-63
862908012388	HMMPfam hit to PF05191, Adenylate kinase, lid region, score 3e-16
862908012389	PS00113 Adenylate kinase signature.
862908012390	preprotein translocase subunit SecY; Reviewed; Region: secY; PRK09204
862908012391	SecY translocase; Region: SecY; pfam00344
862908012392	10 probable transmembrane helices predicted for BMS3280 by TMHMM2.0 at aa 20-42, 69-91, 111-133, 148-167, 174-193, 208-230, 264-286, 306-328, 362-384 and 394-416
862908012393	HMMPfam hit to PF00344, SecY protein, score 5.4e-105
862908012394	Signal peptide predicted for BMS3280 by SignalP 2.0 HMM (Signal peptide probability 0.865) with cleavage site probability 0.778 between residues 28 and 29
862908012395	50S ribosomal protein L15; Reviewed; Region: rplO; PRK05592
862908012396	HMMPfam hit to PF00256, Ribosomal protein L15, score 2.4e-09
862908012397	HMMPfam hit to PF01305, Ribosomal protein L15, score 8e-42
862908012398	Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that...; Region: Ribosomal_L30; cd01658
862908012399	23S rRNA binding site [nucleotide binding]; other site
862908012400	ribosomal protein S5, bacterial/organelle type; Region: rpsE_bact; TIGR01021
862908012401	Ribosomal protein S5, N-terminal domain; Region: Ribosomal_S5; pfam00333
862908012402	Ribosomal protein S5, C-terminal domain; Region: Ribosomal_S5_C; pfam03719
862908012403	HMMPfam hit to PF03719, Ribosomal protein S5, C-terminal, score 6.9e-30
862908012404	HMMPfam hit to PF00333, Ribosomal protein S5, score 2.2e-37
862908012405	PS00585 Ribosomal protein S5 signature.
862908012406	Ribosomal L18/L5e:  L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA...; Region: Ribosomal_L18_L5e; cd00432
862908012407	23S rRNA interface [nucleotide binding]; other site
862908012408	L21e interface [polypeptide binding]; other site
862908012409	5S rRNA interface [nucleotide binding]; other site
862908012410	L27 interface [polypeptide binding]; other site
862908012411	L5 interface [polypeptide binding]; other site
862908012412	HMMPfam hit to PF00861, Ribosomal protein L18P/L5E, score 1.3e-38
862908012413	50S ribosomal protein L6; Validated; Region: rplF; PRK05498
862908012414	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
862908012415	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
862908012416	HMMPfam hit to PF00347, Ribosomal protein L6, score 1.2e-24
862908012417	PS00525 Ribosomal protein L6 signature 1.
862908012418	HMMPfam hit to PF00347, Ribosomal protein L6, score 8.5e-25
862908012419	30S ribosomal protein S8; Validated; Region: rpsH; PRK00136
862908012420	HMMPfam hit to PF00410, Ribosomal protein S8, score 1e-48
862908012421	PS00053 Ribosomal protein S8 signature.
862908012422	30S ribosomal protein S14; Reviewed; Region: rpsN; PRK08881
862908012423	HMMPfam hit to PF00253, Ribosomal protein S14, score 8.7e-26
862908012424	PS00527 Ribosomal protein S14 signature.
862908012425	50S ribosomal protein L5; Validated; Region: rplE; PRK00010
862908012426	Ribosomal protein L5; Region: Ribosomal_L5; pfam00281
862908012427	ribosomal L5P family C-terminus; Region: Ribosomal_L5_C; pfam00673
862908012428	HMMPfam hit to PF00673, Ribosomal protein L5, score 4.1e-48
862908012429	HMMPfam hit to PF00281, Ribosomal protein L5, score 4.2e-23
862908012430	50S ribosomal protein L24; Reviewed; Region: rplX; PRK00004
862908012431	KOW motif of Ribosomal Protein L26; Region: KOW_RPL26; cd06089
862908012432	RNA binding site [nucleotide binding]; other site
862908012433	HMMPfam hit to PF00467, KOW, score 2.7e-09
862908012434	PS01108 Ribosomal protein L24 signature.
862908012435	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012436	50S ribosomal protein L14; Validated; Region: rplN; PRK05483
862908012437	HMMPfam hit to PF00238, Ribosomal protein L14b/L23e, score 1.1e-69
862908012438	PS00049 Ribosomal protein L14 signature.
862908012439	30S ribosomal protein S17; Reviewed; Region: rpsQ; PRK05610
862908012440	HMMPfam hit to PF00366, Ribosomal protein S17, score 4e-28
862908012441	Ribosomal L29 protein/HIP.  L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals.  L29 is located on the surface of the large ribosomal subunit, where it...; Region: Ribosomal_L29_HIP; cd00427
862908012442	23S rRNA interface [nucleotide binding]; other site
862908012443	putative translocon interaction site; other site
862908012444	signal recognition particle (SRP54) interaction site; other site
862908012445	L23 interface [polypeptide binding]; other site
862908012446	trigger factor interaction site; other site
862908012447	HMMPfam hit to PF00831, Ribosomal protein L29, score 3.3e-16
862908012448	Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with...; Region: Ribosomal_L16_L10e; cd01433
862908012449	23S rRNA interface [nucleotide binding]; other site
862908012450	5S rRNA interface [nucleotide binding]; other site
862908012451	putative antibiotic binding site [chemical binding]; other site
862908012452	L25 interface [polypeptide binding]; other site
862908012453	L27 interface [polypeptide binding]; other site
862908012454	HMMPfam hit to PF00252, Ribosomal protein L16, score 2.3e-80
862908012455	PS00701 Ribosomal protein L16 signature 2.
862908012456	ribosomal protein S3, bacterial type; Region: rpsC_bact; TIGR01009
862908012457	K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3  is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel.  The KH...; Region: 30S_S3_KH; cd02412
862908012458	G-X-X-G motif; other site
862908012459	Ribosomal protein S3, C-terminal domain; Region: Ribosomal_S3_C; pfam00189
862908012460	HMMPfam hit to PF00189, Ribosomal protein S3, C-terminal, score 2.1e-47
862908012461	HMMPfam hit to PF07650, KH, type 2, score 3e-19
862908012462	HMMPfam hit to PF00417, Ribosomal protein S3, N-terminal, score 2.6e-24
862908012463	Ribosomal protein L22/L17e.  L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit.  It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper...; Region: Ribosomal_L22; cd00336
862908012464	protein-rRNA interface [nucleotide binding]; other site
862908012465	putative translocon binding site; other site
862908012466	HMMPfam hit to PF00237, Ribosomal protein L22/L17, score 4.1e-28
862908012467	PS00464 Ribosomal protein L22 signature.
862908012468	30S ribosomal protein S19; Reviewed; Region: rpsS; PRK00357
862908012469	HMMPfam hit to PF00203, Ribosomal protein S19/S15, score 3.3e-47
862908012470	PS00323 Ribosomal protein S19 signature.
862908012471	50S ribosomal protein L2; Validated; Region: rplB; PRK09374
862908012472	Ribosomal Proteins L2, RNA binding domain; Region: Ribosomal_L2; pfam00181
862908012473	Ribosomal Proteins L2, C-terminal domain; Region: Ribosomal_L2_C; pfam03947
862908012474	HMMPfam hit to PF03947, Ribosomal protein L2, score 1.9e-85
862908012475	PS00467 Ribosomal protein L2 signature.
862908012476	HMMPfam hit to PF00181, Ribosomal protein L2, score 1.6e-45
862908012477	50S ribosomal protein L23; Reviewed; Region: rplW; PRK05738
862908012478	HMMPfam hit to PF00276, Ribosomal L23 protein, score 6.1e-27
862908012479	50S ribosomal protein L4; Provisional; Region: rplD; PRK05319
862908012480	HMMPfam hit to PF00573, Ribosomal protein L4/L1e, score 5.8e-41
862908012481	50S ribosomal protein L3; Validated; Region: rplC; PRK00001
862908012482	HMMPfam hit to PF00297, Ribosomal protein L3, score 1.1e-70
862908012483	PS00474 Ribosomal protein L3 signature.
862908012484	30S ribosomal protein S10; Reviewed; Region: rpsJ; PRK00596
862908012485	HMMPfam hit to PF00338, Ribosomal protein S10, score 2e-57
862908012486	PS00361 Ribosomal protein S10 signature.
862908012487	elongation factor Tu; Reviewed; Region: PRK00049
862908012488	Elongation Factor Tu (EF-Tu) GTP-binding proteins; Region: EF_Tu; cd01884
862908012489	G1 box; other site
862908012490	GEF interaction site [polypeptide binding]; other site
862908012491	GTP/Mg2+ binding site [chemical binding]; other site
862908012492	Switch I region; other site
862908012493	G2 box; other site
862908012494	G3 box; other site
862908012495	Switch II region; other site
862908012496	G4 box; other site
862908012497	G5 box; other site
862908012498	EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697
862908012499	Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707
862908012500	Antibiotic Binding Site [chemical binding]; other site
862908012501	HMMPfam hit to PF03143, Elongation factor Tu, C-terminal, score 5.4e-56
862908012502	HMMPfam hit to PF03144, Elongation factor Tu, domain 2, score 1.6e-23
862908012503	HMMPfam hit to PF00009, Protein synthesis factor, GTP-binding, score 9e-96
862908012504	PS00301 GTP-binding elongation factors signature.
862908012505	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012506	elongation factor G; Reviewed; Region: PRK00007
862908012507	Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis; Region: EF-G; cd01886
862908012508	G1 box; other site
862908012509	putative GEF interaction site [polypeptide binding]; other site
862908012510	GTP/Mg2+ binding site [chemical binding]; other site
862908012511	Switch I region; other site
862908012512	G2 box; other site
862908012513	G3 box; other site
862908012514	Switch II region; other site
862908012515	G4 box; other site
862908012516	G5 box; other site
862908012517	EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis...; Region: EFG_mtEFG_II; cd04088
862908012518	Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily...; Region: EFG_like_IV; cd01680
862908012519	EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G.  Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2...; Region: EFG_mtEFG_C; cd03713
862908012520	HMMPfam hit to PF00679, Elongation factor G, C-terminal, score 7.3e-35
862908012521	HMMPfam hit to PF03764, Elongation factor G, domain IV, score 3.2e-28
862908012522	HMMPfam hit to PF03144, Elongation factor Tu, domain 2, score 6.5e-18
862908012523	HMMPfam hit to PF00009, Protein synthesis factor, GTP-binding, score 1.5e-113
862908012524	PS00301 GTP-binding elongation factors signature.
862908012525	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012526	30S ribosomal protein S7; Validated; Region: PRK05302
862908012527	HMMPfam hit to PF00177, Ribosomal protein S7, score 8.4e-84
862908012528	S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368
862908012529	S17 interaction site [polypeptide binding]; other site
862908012530	S8 interaction site; other site
862908012531	16S rRNA interaction site [nucleotide binding]; other site
862908012532	streptomycin interaction site [chemical binding]; other site
862908012533	23S rRNA interaction site [nucleotide binding]; other site
862908012534	aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site
862908012535	HMMPfam hit to PF00164, Ribosomal protein S12/S23, score 1.1e-71
862908012536	PS00055 Ribosomal protein S12 signature.
862908012537	RNA polymerase Rpb1, domain 1; Region: RNA_pol_Rpb1_1; pfam04997
862908012538	DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]; Region: RpoC; COG0086
862908012539	RNA polymerase I subunit A N-terminus; Region: RPOLA_N; smart00663
862908012540	RNA polymerase Rpb1, domain 3; Region: RNA_pol_Rpb1_3; pfam04983
862908012541	RNA polymerase Rpb1, domain 4; Region: RNA_pol_Rpb1_4; pfam05000
862908012542	Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429
862908012543	Rpb1 - Rpb6 interaction site [polypeptide binding]; other site
862908012544	Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429
862908012545	Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain; Region: RNAP_beta'_C; cd02655
862908012546	DNA binding site [nucleotide binding]
862908012547	Rpb1 (beta') - Rpb2 (beta) interaction site [polypeptide binding]; other site
862908012548	HMMPfam hit to PF04998, RNA polymerase Rpb1, domain 5, score 2.2e-68
862908012549	HMMPfam hit to PF05000, RNA polymerase Rpb1, domain 4, score 1.7e-26
862908012550	HMMPfam hit to PF04983, RNA polymerase Rpb1, domain 3, score 2.3e-37
862908012551	HMMPfam hit to PF00623, RNA polymerase, alpha subunit, score 2.4e-81
862908012552	HMMPfam hit to PF04997, RNA polymerase Rpb1, domain 1, score 3.1e-133
862908012553	DNA-directed RNA polymerase subunit beta; Reviewed; Region: rpoB; PRK00405
862908012554	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cl17585
862908012555	RNA polymerase Rpb2, domain 2; Region: RNA_pol_Rpb2_2; pfam04561
862908012556	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
862908012557	RNA polymerase Rpb2, domain 6; Region: RNA_pol_Rpb2_6; pfam00562
862908012558	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
862908012559	RPB10 interaction site [polypeptide binding]; other site
862908012560	RPB3 interaction site [polypeptide binding]; other site
862908012561	RPB11 interaction site [polypeptide binding]; other site
862908012562	RPB12 interaction site [polypeptide binding]; other site
862908012563	RPB1 interaction site [polypeptide binding]; other site
862908012564	HMMPfam hit to PF04560, RNA polymerase Rpb2, domain 7, score 8.2e-48
862908012565	HMMPfam hit to PF00562, RNA polymerase Rpb2, domain 6, score 6.5e-179
862908012566	PS01166 RNA polymerases beta chain signature.
862908012567	HMMPfam hit to PF04565, RNA polymerase Rpb2, domain 3, score 2e-44
862908012568	HMMPfam hit to PF04563, RNA polymerase beta subunit, score 4.8e-08
862908012569	HMMPfam hit to PF04561, RNA polymerase Rpb2, domain 2, score 9.7e-09
862908012570	Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of...; Region: Ribosomal_L7_L12; cd00387
862908012571	core dimer interface [polypeptide binding]; other site
862908012572	peripheral dimer interface [polypeptide binding]; other site
862908012573	L10 interface [polypeptide binding]; other site
862908012574	L11 interface [polypeptide binding]; other site
862908012575	putative EF-Tu interaction site [polypeptide binding]; other site
862908012576	putative EF-G interaction site [polypeptide binding]; other site
862908012577	HMMPfam hit to PF00542, Ribosomal protein L7/L12, score 6.6e-38
862908012578	Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein...; Region: Ribosomal_L10; cd05797
862908012579	23S rRNA interface [nucleotide binding]; other site
862908012580	Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site
862908012581	HMMPfam hit to PF00466, Ribosomal protein L10, score 4.8e-12
862908012582	Ribosomal protein L1.  The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA.  In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds...; Region: Ribosomal_L1; cd00403
862908012583	mRNA/rRNA interface [nucleotide binding]; other site
862908012584	HMMPfam hit to PF00687, Ribosomal protein L1, score 4.6e-122
862908012585	PS01199 Ribosomal protein L1 signature.
862908012586	50S ribosomal protein L11; Validated; Region: rplK; PRK00140
862908012587	Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal...; Region: Ribosomal_L11; cd00349
862908012588	23S rRNA interface [nucleotide binding]; other site
862908012589	L7/L12 interface [polypeptide binding]; other site
862908012590	putative thiostrepton binding site; other site
862908012591	L25 interface [polypeptide binding]; other site
862908012592	HMMPfam hit to PF00298, Ribosomal protein L11, score 2e-14
862908012593	HMMPfam hit to PF03946, Ribosomal protein L11, score 6.8e-34
862908012594	transcription antitermination protein NusG; Validated; Region: nusG; PRK05609
862908012595	Bacterial N-Utilization Substance G (NusG) N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1; cd09891
862908012596	putative homodimer interface [polypeptide binding]; other site
862908012597	NusG contains an NGN domain at its N-terminus and KOW motif at its C-terminus; Region: KOW_NusG; cd06091
862908012598	heterodimer interface [polypeptide binding]; other site
862908012599	homodimer interface [polypeptide binding]; other site
862908012600	PS01014 Transcription termination factor nusG signature.
862908012601	HMMPfam hit to PF00467, KOW, score 4.5e-06
862908012602	HMMPfam hit to PF02357, Bacterial transcription antitermination protein NusG, score 2.6e-10
862908012603	SecE/Sec61-gamma subunits of protein translocation complex; Region: SecE; pfam00584
862908012604	HMMPfam hit to PF00584, Protein secE/sec61-gamma protein, score 1e-06
862908012605	3 probable transmembrane helices predicted for BMS3317 by TMHMM2.0 at aa 12-34, 49-68 and 98-120
862908012606	elongation factor Tu; Reviewed; Region: PRK00049
862908012607	Elongation Factor Tu (EF-Tu) GTP-binding proteins; Region: EF_Tu; cd01884
862908012608	G1 box; other site
862908012609	GEF interaction site [polypeptide binding]; other site
862908012610	GTP/Mg2+ binding site [chemical binding]; other site
862908012611	Switch I region; other site
862908012612	G2 box; other site
862908012613	G3 box; other site
862908012614	Switch II region; other site
862908012615	G4 box; other site
862908012616	G5 box; other site
862908012617	EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697
862908012618	Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707
862908012619	Antibiotic Binding Site [chemical binding]; other site
862908012620	HMMPfam hit to PF03143, Elongation factor Tu, C-terminal, score 5.4e-56
862908012621	HMMPfam hit to PF03144, Elongation factor Tu, domain 2, score 1.6e-23
862908012622	HMMPfam hit to PF00009, Protein synthesis factor, GTP-binding, score 9e-96
862908012623	PS00301 GTP-binding elongation factors signature.
862908012624	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012625	Signal peptide predicted for BMS3319 by SignalP 2.0 HMM (Signal peptide probability 0.945) with cleavage site probability 0.509 between residues 16 and 17
862908012626	This hit extended beyond the end of the feature by 1 aa and was clipped.; PS00294 Prenyl group binding site (CAAX box).
862908012627	Signal peptide predicted for BMS3321 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.988 between residues 20 and 21
862908012628	Signal peptide predicted for BMS3322 by SignalP 2.0 HMM (Signal peptide probability 0.978) with cleavage site probability 0.961 between residues 28 and 29
862908012629	rRNA methylase, putative, group 3; Region: rRNA_methyl_3; TIGR00186
862908012630	SpoU rRNA Methylase family; Region: SpoU_methylase; pfam00588
862908012631	HMMPfam hit to PF00588, tRNA/rRNA methyltransferase (SpoU), score 6e-20
862908012632	prolyl-tRNA synthetase; Provisional; Region: PRK09194
862908012633	Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ProRS_core_prok; cd00779
862908012634	dimer interface [polypeptide binding]; other site
862908012635	motif 1; other site
862908012636	active site
862908012637	motif 2; other site
862908012638	INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and...; Region: ProRS-INS; cd04334
862908012639	putative deacylase active site [active]
862908012640	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
862908012641	active site
862908012642	motif 3; other site
862908012643	ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding; Region: ProRS_anticodon_short; cd00861
862908012644	anticodon binding site; other site
862908012645	HMMPfam hit to PF03129, Anticodon-binding, score 1.5e-22
862908012646	HMMPfam hit to PF04073, YbaK/prolyl-tRNA synthetase associated region, score 2.4e-05
862908012647	HMMPfam hit to PF00587, tRNA synthetases, class-II (G, H, P and S), score 8.2e-57
862908012648	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1.
862908012649	Signal peptide predicted for BMS3325 by SignalP 2.0 HMM (Signal peptide probability 0.999) with cleavage site probability 0.640 between residues 30 and 31
862908012650	1 probable transmembrane helix predicted for BMS3326 by TMHMM2.0 at aa 7-26
862908012651	7 probable transmembrane helices predicted for BMS3327 by TMHMM2.0 at aa 12-34, 49-71, 83-105, 120-142, 206-223, 233-255 and 275-294
862908012652	Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of...; Region: vWFA; cd00198
862908012653	metal ion-dependent adhesion site (MIDAS); other site
862908012654	Signal peptide predicted for BMS3328 by SignalP 2.0 HMM (Signal peptide probability 0.836) with cleavage site probability 0.265 between residues 18 and 19
862908012655	Signal peptide predicted for BMS3329 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.691 between residues 21 and 22
862908012656	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908012657	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
862908012658	dimer interface [polypeptide binding]; other site
862908012659	putative CheW interface [polypeptide binding]; other site
862908012660	HMMPfam hit to PF00015, Bacterial chemotaxis sensory transducer, score 2.5e-09
862908012661	4 probable transmembrane helices predicted for BMS3330 by TMHMM2.0 at aa 20-42, 62-84, 97-119 and 139-161
862908012662	1 probable transmembrane helix predicted for BMS3331 by TMHMM2.0 at aa 7-29
862908012663	Zinc peptidases M18, M20, M28, and M42; Region: Zinc_peptidase_like; cl14876
862908012664	PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain; Region: PA; cl08238
862908012665	M28 Zn-Peptidases containing a PA domain insert and associated with a PDZ domain; Region: M28_like_PA_PDZ_associated; cd05663
862908012666	Peptidase family M28; Region: Peptidase_M28; pfam04389
862908012667	metal binding site [ion binding]; metal-binding site
862908012668	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
862908012669	HMMPfam hit to PF04389, Peptidase M28, score 3.4e-46
862908012670	Signal peptide predicted for BMS3332 by SignalP 2.0 HMM (Signal peptide probability 0.993) with cleavage site probability 0.871 between residues 19 and 20
862908012671	4 probable transmembrane helices predicted for BMS3333 by TMHMM2.0 at aa 10-32, 49-68, 88-105 and 118-140
862908012672	5 probable transmembrane helices predicted for BMS3334 by TMHMM2.0 at aa 7-26, 145-167, 180-202, 217-233 and 240-257
862908012673	Protein of unknown function, DUF399; Region: DUF399; cl01139
862908012674	Signal peptide predicted for BMS3335 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.993 between residues 16 and 17
862908012675	PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria.  Although orthologs of PaaI exist in archaea and eukaryotes, their function has not...; Region: PaaI_thioesterase; cd03443
862908012676	CoenzymeA binding site [chemical binding]; other site
862908012677	subunit interaction site [polypeptide binding]; other site
862908012678	PHB binding site; other site
862908012679	HMMPfam hit to PF03061, Thioesterase superfamily, score 3.2e-14
862908012680	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908012681	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed; Region: lpxC; PRK13186
862908012682	UDP-3-O-acyl N-acetylglycosamine deacetylase; Region: LpxC; pfam03331
862908012683	HMMPfam hit to PF03331, UDP-3-0-acyl N-acetylglucosamine deacetylase, score 1.2e-122
862908012684	Signal peptide predicted for BMS3338 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.569 between residues 18 and 19
862908012685	Holliday junction DNA helicase RuvB; Reviewed; Region: ruvB; PRK00080
862908012686	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908012687	Walker A motif; other site
862908012688	ATP binding site [chemical binding]; other site
862908012689	Walker B motif; other site
862908012690	arginine finger; other site
862908012691	Holliday junction DNA helicase ruvB C-terminus; Region: RuvB_C; pfam05491
862908012692	HMMPfam hit to PF05491, Holliday junction DNA helicase RuvB, C-terminal, score 3.5e-39
862908012693	HMMPfam hit to PF00004, AAA ATPase, central region, score 1e-31
862908012694	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012695	HMMPfam hit to PF05496, Holliday junction DNA helicase RuvB, N-terminal, score 1.2e-09
862908012696	Holliday junction DNA helicase RuvA; Reviewed; Region: ruvA; PRK00116
862908012697	RuvA N terminal domain; Region: RuvA_N; pfam01330
862908012698	HMMPfam hit to PF01330, Bacterial DNA recombination protein, RuvA, score 4.6e-09
862908012699	Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD...; Region: RuvC_resolvase; cd00529
862908012700	active site
862908012701	putative DNA-binding cleft [nucleotide binding]; other site
862908012702	dimer interface [polypeptide binding]; other site
862908012703	HMMPfam hit to PF02075, Crossover junction endodeoxyribonuclease RuvC, score 3e-39
862908012704	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]; Region: FolD; COG0190
862908012705	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; Region: THF_DHG_CYH; pfam00763
862908012706	NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase; Region: NAD_bind_m-THF_DH_Cyclohyd; cd01080
862908012707	homodimer interface [polypeptide binding]; other site
862908012708	NADP binding site [chemical binding]; other site
862908012709	substrate binding site [chemical binding]; other site
862908012710	HMMPfam hit to PF00763, Tetrahydrofolate dehydrogenase/cyclohydrolase, score 3.5e-19
862908012711	HMMPfam hit to PF02882, Tetrahydrofolate dehydrogenase/cyclohydrolase, score 2.8e-73
862908012712	glycine cleavage system aminomethyltransferase T; Reviewed; Region: gcvT; PRK00389
862908012713	Glycine cleavage T-protein C-terminal barrel domain; Region: GCV_T_C; pfam08669
862908012714	HMMPfam hit to PF01571, Glycine cleavage T protein (aminomethyl transferase), score 1.2e-82
862908012715	Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and...; Region: GCS_H; cd06848
862908012716	lipoyl attachment site [posttranslational modification]; other site
862908012717	HMMPfam hit to PF01597, Glycine cleavage H-protein, score 1.7e-65
862908012718	PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
862908012719	TonB C terminal; Region: TonB_2; pfam13103
862908012720	1 probable transmembrane helix predicted for BMS3347 by TMHMM2.0 at aa 17-36
862908012721	Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]; Region: MrcA; COG5009
862908012722	Transglycosylase; Region: Transgly; pfam00912
862908012723	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
862908012724	HMMPfam hit to PF00905, Penicillin-binding protein, transpeptidase, score 2.6e-30
862908012725	HMMPfam hit to PF00912, Glycosyl transferase, family 51, score 3.3e-72
862908012726	1 probable transmembrane helix predicted for BMS3348 by TMHMM2.0 at aa 7-29
862908012727	Signal peptide predicted for BMS3348 by SignalP 2.0 HMM (Signal peptide probability 0.994) with cleavage site probability 0.452 between residues 24 and 25
862908012728	Patatins and Phospholipases; Region: Patatin_and_cPLA2; cl11396
862908012729	active site
862908012730	nucleophile elbow; other site
862908012731	Signal peptide predicted for BMS3349 by SignalP 2.0 HMM (Signal peptide probability 0.954) with cleavage site probability 0.385 between residues 19 and 20
862908012732	exodeoxyribonuclease VII small subunit; Provisional; Region: PRK00977
862908012733	HMMPfam hit to PF02609, Exonuclease VII, small subunit, score 2.2e-19
862908012734	Flagellar basal body rod protein [Cell motility and secretion]; Region: FlgG; COG4786
862908012735	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
862908012736	flagellar basal-body rod protein FlgF; Region: flgF; TIGR02490
862908012737	HMMPfam hit to PF00460, Flagellar basal body rod protein, score 3.9e-13
862908012738	PS00588 Flagella basal body rod proteins signature.
862908012739	HMMPfam hit to PF06429, Protein of unknown function DUF1078, score 0.00022
862908012740	flagellar basal body rod protein FlgG; Provisional; Region: flgG; PRK12693
862908012741	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
862908012742	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; cl15855
862908012743	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
862908012744	HMMPfam hit to PF00460, Flagellar basal body rod protein, score 1.3e-11
862908012745	PS00588 Flagella basal body rod proteins signature.
862908012746	HMMPfam hit to PF06429, Protein of unknown function DUF1078, score 1.9e-18
862908012747	Domains similar to fish antifreeze type III protein; Region: SAF; cl00555
862908012748	Flagellar L-ring protein; Region: FlgH; cl17277
862908012749	flagellar basal body P-ring protein; Reviewed; Region: flgI; cl14622
862908012750	Flagellar P-ring protein; Region: FlgI; pfam02119
862908012751	Signal peptide predicted for BMS3355 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.982 between residues 18 and 19
862908012752	HMMPfam hit to PF02119, Flagellar P-ring protein, score 1.3e-111
862908012753	Anti-sigma-28 factor, FlgM; Region: FlgM; pfam04316
862908012754	FlgN protein; Region: FlgN; pfam05130
862908012755	flagellar hook-associated protein FlgK; Validated; Region: flgK; PRK07739
862908012756	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
862908012757	HMMPfam hit to PF00460, Flagellar basal body rod protein, score 2.7e-06
862908012758	HMMPfam hit to PF06429, Protein of unknown function DUF1078, score 3.4e-18
862908012759	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
862908012760	flagellar hook-associated protein FlgL; Validated; Region: flgL; PRK07701
862908012761	HMMPfam hit to PF00669, Flagellin, N-terminal, score 0.00021
862908012762	carbon storage regulator; Provisional; Region: PRK01712
862908012763	HMMPfam hit to PF02599, Carbon storage regulator, score 1.1e-29
862908012764	FliW protein; Region: FliW; cl00740
862908012765	HMMPfam hit to PF02623, Protein of unknown function DUF180, score 4.8e-16
862908012766	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908012767	binding surface
862908012768	Tetratricopeptide repeat; Region: TPR_16; pfam13432
862908012769	TPR motif; other site
862908012770	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908012771	binding surface
862908012772	TPR motif; other site
862908012773	HMMPfam hit to PF00515, TPR repeat, score 0.51; HMMPfam hit to PF07719, , score 0.66; PF07719, Tetratricopeptide repeat
862908012774	HMMPfam hit to PF07719, , score 1.6; PF07719, Tetratricopeptide repeat
862908012775	HMMPfam hit to PF07719, , score 0.011; PF07719, Tetratricopeptide repeat; HMMPfam hit to PF00515, TPR repeat, score 0.12
862908012776	HMMPfam hit to PF00515, TPR repeat, score 5.8e-07; HMMPfam hit to PF07719, , score 9e-06; PF07719, Tetratricopeptide repeat
862908012777	HMMPfam hit to PF07719, , score 0.042; PF07719, Tetratricopeptide repeat; HMMPfam hit to PF00515, TPR repeat, score 0.12
862908012778	Tetratricopeptide repeat; Region: TPR_18; pfam13512
862908012779	Signal peptide predicted for BMS3364 by SignalP 2.0 HMM (Signal peptide probability 0.632) with cleavage site probability 0.242 between residues 23 and 24
862908012780	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908012781	Domain of unknown function DUF20; Region: UPF0118; pfam01594
862908012782	Predicted permease, member of the PurR regulon [General function prediction only]; Region: yhhT; COG0628
862908012783	HMMPfam hit to PF01594, Protein of unknown function UPF0118, score 7e-41
862908012784	8 probable transmembrane helices predicted for BMS3365 by TMHMM2.0 at aa 13-32, 37-59, 66-88, 150-169, 205-227, 237-259, 272-294 and 309-331
862908012785	Signal peptide predicted for BMS3365 by SignalP 2.0 HMM (Signal peptide probability 0.906) with cleavage site probability 0.663 between residues 40 and 41
862908012786	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
862908012787	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
862908012788	ligand binding site [chemical binding]; other site
862908012789	flexible hinge region; other site
862908012790	HMMPfam hit to PF00027, Cyclic nucleotide-binding, score 4.4e-21
862908012791	Bacterial SH3 domain homologues; Region: SH3b; smart00287
862908012792	2 probable transmembrane helices predicted for BMS3367 by TMHMM2.0 at aa 110-132 and 139-161
862908012793	Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]; Region: ArgD; COG4992
862908012794	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
862908012795	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
862908012796	catalytic residue [active]
862908012797	HMMPfam hit to PF00202, Aminotransferase class-III, score 5e-31
862908012798	Arginine N-succinyltransferase beta subunit; Region: AstA; cl11440
862908012799	HMMPfam hit to PF04958, Arginine N-succinyltransferase beta subunit, score 3.6e-39
862908012800	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
862908012801	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
862908012802	NAD(P) binding site [chemical binding]; other site
862908012803	catalytic residues [active]
862908012804	HMMPfam hit to PF00171, Aldehyde dehydrogenase, score 8.8e-99
862908012805	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012806	PS00687 Aldehyde dehydrogenases glutamic acid active site.
862908012807	PS00142 Neutral zinc metallopeptidases, zinc-binding region signature.
862908012808	Signal peptide predicted for BMS3371 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 16 and 17
862908012809	Signal peptide predicted for BMS3372 by SignalP 2.0 HMM (Signal peptide probability 0.893) with cleavage site probability 0.893 between residues 16 and 17
862908012810	HEXXH motif domain; Region: mod_HExxH; TIGR04267
862908012811	Predicted aminomethyltransferase related to GcvT [General function prediction only]; Region: COG0354
862908012812	folate-binding protein YgfZ; Region: ygfZ_signature; TIGR03317
862908012813	TPR repeat; Region: TPR_11; pfam13414
862908012814	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908012815	binding surface
862908012816	TPR motif; other site
862908012817	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
862908012818	TPR motif; other site
862908012819	binding surface
862908012820	TPR repeat; Region: TPR_11; pfam13414
862908012821	HMMPfam hit to PF07719, , score 0.12; PF07719, Tetratricopeptide repeat; HMMPfam hit to PF00515, TPR repeat, score 0.052
862908012822	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012823	HMMPfam hit to PF00515, TPR repeat, score 0.035; HMMPfam hit to PF07719, , score 0.082; PF07719, Tetratricopeptide repeat
862908012824	HMMPfam hit to PF07719, , score 0.55; PF07719, Tetratricopeptide repeat
862908012825	HMMPfam hit to PF07719, , score 0.073; PF07719, Tetratricopeptide repeat
862908012826	HMMPfam hit to PF01571, Glycine cleavage T protein (aminomethyl transferase), score 0.002
862908012827	Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]; Region: sufA; COG0316
862908012828	HMMPfam hit to PF01521, HesB/YadR/YfhF, score 8.3e-39
862908012829	PS01152 Hypothetical hesB/yadR/yfhF family signature.
862908012830	Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins...; Region: FHA; cd00060
862908012831	FOG: FHA domain [Signal transduction mechanisms]; Region: COG1716
862908012832	phosphopeptide binding site; other site
862908012833	HMMPfam hit to PF00498, Forkhead-associated, score 9.3e-09
862908012834	Cobalamin adenosyltransferase; Region: Cob_adeno_trans; pfam01923
862908012835	HMMPfam hit to PF01923, Protein of unknown function DUF80, score 5e-64
862908012836	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908012837	methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom...; Region: MM_CoA_mut_B12_BD; cd02071
862908012838	B12 binding site [chemical binding]; other site
862908012839	cobalt ligand [ion binding]; other site
862908012840	The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion; Region: Fer4_NifH; cl17203
862908012841	Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM)-like family; contains proteins similar to MCM, and the large subunit of Streptomyces coenzyme B12-dependent isobutyryl-CoA mutase (ICM). MCM catalyzes the isomerization of...; Region: MM_CoA_mutase; cl00817
862908012842	HMMPfam hit to PF01642, Methylmalonyl-CoA mutase, score 2.6e-57
862908012843	HMMPfam hit to PF03308, ArgK protein, score 1.4e-10
862908012844	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012845	HMMPfam hit to PF02310, Coenzyme B12-binding, score 3e-22
862908012846	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
862908012847	4Fe-4S dicluster domain; Region: Fer4_7; pfam12838
862908012848	HMMPfam hit to PF00037, 4Fe-4S ferredoxin, iron-sulfur binding, score 0.0001
862908012849	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
862908012850	HMMPfam hit to PF00037, 4Fe-4S ferredoxin, iron-sulfur binding, score 1.7e-05
862908012851	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature.
862908012852	lipoprotein signal peptidase; Reviewed; Region: lspA; PRK00376
862908012853	lipoprotein signal peptidase; Provisional; Region: PRK14787
862908012854	HMMPfam hit to PF01252, Peptidase A8, signal peptidase II, score 6.6e-37
862908012855	4 probable transmembrane helices predicted for BMS3381 by TMHMM2.0 at aa 31-48, 63-85, 92-111 and 131-153
862908012856	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
862908012857	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
862908012858	active site
862908012859	phosphorylation site [posttranslational modification]
862908012860	intermolecular recognition site; other site
862908012861	dimerization interface [polypeptide binding]; other site
862908012862	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
862908012863	Walker A motif; other site
862908012864	ATP binding site [chemical binding]; other site
862908012865	Walker B motif; other site
862908012866	arginine finger; other site
862908012867	Bacterial regulatory protein, Fis family; Region: HTH_8; cl17420
862908012868	PS00688 Sigma-54 interaction domain C-terminal part signature.
862908012869	HMMPfam hit to PF00158, Sigma-54 factor, interaction region, score 1.3e-135
862908012870	PS00676 Sigma-54 interaction domain ATP-binding region B signature.
862908012871	PS00675 Sigma-54 interaction domain ATP-binding region A signature.
862908012872	HMMPfam hit to PF00072, Response regulator receiver, score 1.3e-41
862908012873	Predicted transmembrane sensor domain [Signal transduction mechanisms]; Region: COG4252
862908012874	CHASE2 domain; Region: CHASE2; pfam05226
862908012875	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
862908012876	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
862908012877	dimer interface [polypeptide binding]; other site
862908012878	phosphorylation site [posttranslational modification]
862908012879	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
862908012880	ATP binding site [chemical binding]; other site
862908012881	Mg2+ binding site [ion binding]; other site
862908012882	G-X-G motif; other site
862908012883	HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 8.2e-43
862908012884	HMMPfam hit to PF00512, Histidine kinase A, N-terminal, score 9.8e-09
862908012885	4 probable transmembrane helices predicted for BMS3383 by TMHMM2.0 at aa 19-38, 314-331, 338-357 and 361-383
862908012886	HMMPfam hit to PF05226, CHASE2, score 0.00098
862908012887	4 probable transmembrane helices predicted for BMS3384 by TMHMM2.0 at aa 2-24, 28-50, 138-157 and 162-184
862908012888	Endonuclease IV [DNA replication, recombination, and repair]; Region: Nfo; COG0648
862908012889	AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of...; Region: AP2Ec; cd00019
862908012890	AP (apurinic/apyrimidinic) site pocket; other site
862908012891	DNA interaction; other site
862908012892	Metal-binding active site; metal-binding site
862908012893	HMMPfam hit to PF01261, AP endonuclease, family 2, score 2.1e-18
862908012894	PS00094 C-5 cytosine-specific DNA methylases active site.
862908012895	Signal peptide predicted for BMS3387 by SignalP 2.0 HMM (Signal peptide probability 0.870) with cleavage site probability 0.416 between residues 18 and 19
862908012896	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908012897	4 probable transmembrane helices predicted for BMS3388 by TMHMM2.0 at aa 7-29, 44-66, 71-93 and 97-119
862908012898	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
862908012899	active site
862908012900	HMMPfam hit to PF00483, Nucleotidyl transferase, score 1e-05
862908012901	Phosphotransferase enzyme family; Region: APH; pfam01636
862908012902	Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: APH_ChoK_like; cl17270
862908012903	Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs)...; Region: APH_ChoK_like; cd05120
862908012904	substrate binding site [chemical binding]; other site
862908012905	HMMPfam hit to PF01636, Aminoglycoside phosphotransferase, score 3.5e-18
862908012906	Signal peptide predicted for BMS3391 by SignalP 2.0 HMM (Signal peptide probability 0.996) with cleavage site probability 0.838 between residues 20 and 21
862908012907	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908012908	Lysine Motif is a small domain involved in binding peptidoglycan; Region: LysM; cd00118
862908012909	Signal peptide predicted for BMS3392 by SignalP 2.0 HMM (Signal peptide probability 0.998) with cleavage site probability 0.436 between residues 25 and 26
862908012910	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908012911	Signal peptide predicted for BMS3393 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.794 between residues 20 and 21
862908012912	Signal peptide predicted for BMS3394 by SignalP 2.0 HMM (Signal peptide probability 0.791) with cleavage site probability 0.462 between residues 22 and 23
862908012913	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908012914	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after...; Region: HPPK; cd00483
862908012915	catalytic center binding site [active]
862908012916	ATP binding site [chemical binding]; other site
862908012917	HMMPfam hit to PF01288, 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK, score 9.1e-37
862908012918	Acyl-CoA dehydrogenases [Lipid metabolism]; Region: CaiA; COG1960
862908012919	Acyl-CoA dehydrogenase; Region: ACAD; cl09933
862908012920	active site
862908012921	HMMPfam hit to PF02771, Acyl-CoA dehydrogenase, N-terminal, score 5.4e-15
862908012922	HMMPfam hit to PF02770, Acyl-CoA dehydrogenase, central region, score 5.6e-45
862908012923	PS00072 Acyl-CoA dehydrogenases signature 1.
862908012924	HMMPfam hit to PF00441, Acyl-CoA dehydrogenase, C-terminal, score 6.2e-77
862908012925	PS00073 Acyl-CoA dehydrogenases signature 2.
862908012926	The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_beta; cd01714
862908012927	Ligand binding site [chemical binding]; other site
862908012928	Electron transfer flavoprotein domain; Region: ETF; pfam01012
862908012929	HMMPfam hit to PF01012, Electron transfer flavoprotein beta-subunit, score 1.5e-79
862908012930	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012931	PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
862908012932	Electron transfer flavoprotein, alpha subunit [Energy production and conversion]; Region: FixB; COG2025
862908012933	The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an...; Region: ETF_alpha; cd01715
862908012934	Electron transfer flavoprotein FAD-binding domain; Region: ETF_alpha; pfam00766
862908012935	HMMPfam hit to PF00766, Electron transfer flavoprotein, alpha subunit, score 3.2e-95
862908012936	PS00696 Electron transfer flavoprotein alpha-subunit signature.
862908012937	Signal peptide predicted for BMS3399 by SignalP 2.0 HMM (Signal peptide probability 0.824) with cleavage site probability 0.325 between residues 21 and 22
862908012938	Domain of unknown function (DUF4388); Region: DUF4388; pfam14332
862908012939	Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]; Region: flhG; COG0455
862908012940	MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions...; Region: MRP-like; cd02037
862908012941	Walker A motif; other site
862908012942	PS01215 Mrp family signature.
862908012943	2 probable transmembrane helices predicted for BMS3403 by TMHMM2.0 at aa 41-60 and 89-111
862908012944	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
862908012945	N-acetyl-D-glucosamine binding site [chemical binding]; other site
862908012946	catalytic residue [active]
862908012947	Signal peptide predicted for BMS3404 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.606 between residues 24 and 25
862908012948	HMMPfam hit to PF01464, SLT, score 1.6e-32
862908012949	PS00922 Prokaryotic transglycosylases signature.
862908012950	GTP-binding protein YchF; Reviewed; Region: PRK09601
862908012951	YchF GTPase; Region: YchF; cd01900
862908012952	G1 box; other site
862908012953	GTP/Mg2+ binding site [chemical binding]; other site
862908012954	Switch I region; other site
862908012955	G2 box; other site
862908012956	Switch II region; other site
862908012957	G3 box; other site
862908012958	G4 box; other site
862908012959	G5 box; other site
862908012960	TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the...; Region: TGS_YchF_C; cd04867
862908012961	HMMPfam hit to PF06071, Conserved hypothetical protein 92, score 5.2e-59
862908012962	HMMPfam hit to PF01926, GTP-binding protein, HSR1-related, score 4.6e-31
862908012963	PS00017 ATP/GTP-binding site motif A (P-loop).
862908012964	PS00443 Glutamine amidotransferases class-II active site.
862908012965	Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through...; Region: PTH; cd00462
862908012966	putative active site [active]
862908012967	catalytic residue [active]
862908012968	HMMPfam hit to PF01195, Peptidyl-tRNA hydrolase, score 4.2e-67
862908012969	PS01196 Peptidyl-tRNA hydrolase signature 2.
862908012970	ribose-phosphate pyrophosphokinase; Provisional; Region: PRK01259
862908012971	N-terminal domain of ribose phosphate pyrophosphokinase; Region: Pribosyltran_N; pfam13793
862908012972	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
862908012973	active site
862908012974	HMMPfam hit to PF00156, Phosphoribosyltransferase, score 2.4e-31
862908012975	PS00103 Purine/pyrimidine phosphoribosyl transferases signature.
862908012976	PS00114 Phosphoribosyl pyrophosphate synthetase signature.
862908012977	Transglycosylase; Region: Transgly; pfam00912
862908012978	penicillin-binding protein, 1A family; Region: PBP_1a_fam; TIGR02074
862908012979	HMMPfam hit to PF00912, Glycosyl transferase, family 51, score 6.9e-51
862908012980	1 probable transmembrane helix predicted for BMS3408 by TMHMM2.0 at aa 9-31
862908012981	Signal peptide predicted for BMS3410 by SignalP 2.0 HMM (Signal peptide probability 1.000) with cleavage site probability 0.999 between residues 21 and 22
862908012982	Signal peptide predicted for BMS3411 by SignalP 2.0 HMM (Signal peptide probability 0.997) with cleavage site probability 0.888 between residues 18 and 19
862908012983	Prokaryotic UGPase catalyses the synthesis of UDP-glucose; Region: UGPase_prokaryotic; cd02541
862908012984	active site
862908012985	tetramer interface; other site
862908012986	HMMPfam hit to PF00483, Nucleotidyl transferase, score 1.3e-11
862908012987	Signal peptide predicted for BMS3413 by SignalP 2.0 HMM (Signal peptide probability 0.947) with cleavage site probability 0.540 between residues 43 and 44
862908012988	Predicted permeases [General function prediction only]; Region: COG0795
862908012989	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
862908012990	HMMPfam hit to PF03739, Predicted permease YjgP/YjgQ, score 3.8e-22
862908012991	5 probable transmembrane helices predicted for BMS3415 by TMHMM2.0 at aa 15-37, 96-118, 282-300, 313-331 and 341-360
862908012992	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]; Region: ArnT; COG1807
862908012993	HMMPfam hit to PF02366, Glycosyl transferase, family 39, score 7.1e-05
862908012994	13 probable transmembrane helices predicted for BMS3416 by TMHMM2.0 at aa 12-29, 76-98, 111-130, 135-157, 162-179, 183-205, 212-234, 260-282, 294-311, 316-338, 350-372, 378-400 and 409-431
862908012995	HMMPfam hit to PF03183, Borrelia repeat protein, score 7.8
862908012996	HMMPfam hit to PF03183, Borrelia repeat protein, score 7
862908012997	Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II)...; Region: Pep_deformylase; cd00487
862908012998	active site
862908012999	catalytic residues [active]
862908013000	metal binding site [ion binding]; metal-binding site
862908013001	HMMPfam hit to PF01327, Formylmethionine deformylase, score 2.2e-60
862908013002	PS00017 ATP/GTP-binding site motif A (P-loop).
862908013003	methionyl-tRNA formyltransferase; Reviewed; Region: fmt; PRK00005
862908013004	Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N; cd08646
862908013005	putative active site [active]
862908013006	substrate binding site [chemical binding]; other site
862908013007	putative cosubstrate binding site; other site
862908013008	catalytic site [active]
862908013009	C-terminal domain of Formyltransferase and other enzymes; Region: Met_tRNA_FMT_C; cd08704
862908013010	substrate binding site [chemical binding]; other site
862908013011	HMMPfam hit to PF00551, Formyl transferase, N-terminal, score 9.7e-32
862908013012	HMMPfam hit to PF02911, Formyl transferase, C-terminal, score 2.7e-19
862908013013	Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Region: Rpe; COG0036
862908013014	Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose...; Region: RPE; cd00429
862908013015	substrate binding site [chemical binding]; other site
862908013016	hexamer interface [polypeptide binding]; other site
862908013017	metal binding site [ion binding]; metal-binding site
862908013018	HMMPfam hit to PF00834, Ribulose-phosphate 3-epimerase, score 1.3e-67
862908013019	PS01085 Ribulose-phosphate 3-epimerase family signature 1.
862908013020	Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL); Region: PAL-HAL; cd00332
862908013021	active sites [active]
862908013022	tetramer interface [polypeptide binding]; other site
862908013023	HMMPfam hit to PF00221, Phenylalanine/histidine ammonia-lyase, score 1.8e-219
862908013024	PS00488 Phenylalanine and histidine ammonia-lyases signature.
862908013025	imidazolonepropionase; Validated; Region: PRK09356
862908013026	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
862908013027	active site
862908013028	HMMPfam hit to PF01979, Amidohydrolase, score 0.0086
862908013029	TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a...; Region: TlpA_like_family; cd02966
862908013030	Thioredoxin-like; Region: Thioredoxin_8; pfam13905
862908013031	catalytic residues [active]
862908013032	1 probable transmembrane helix predicted for BMS3422 by TMHMM2.0 at aa 5-24
862908013033	Signal peptide predicted for BMS3422 by SignalP 2.0 HMM (Signal peptide probability 0.606) with cleavage site probability 0.419 between residues 20 and 21
862908013034	1 probable transmembrane helix predicted for BMS3423 by TMHMM2.0 at aa 39-58
862908013035	glycerol kinase; Region: glycerol_kin; TIGR01311
862908013036	Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases; Region: FGGY_EcGK_like; cd07786
862908013037	N- and C-terminal domain interface [polypeptide binding]; other site
862908013038	active site
862908013039	MgATP binding site [chemical binding]; other site
862908013040	catalytic site [active]
862908013041	metal binding site [ion binding]; metal-binding site
862908013042	glycerol binding site [chemical binding]; other site
862908013043	homotetramer interface [polypeptide binding]; other site
862908013044	homodimer interface [polypeptide binding]; other site
862908013045	FBP binding site [chemical binding]; other site
862908013046	HMMPfam hit to PF00370, Carbohydrate kinase, FGGY, score 1.2e-74
862908013047	HMMPfam hit to PF02782, Carbohydrate kinase, FGGY, score 3.1e-46
862908013048	DNA repair protein RadA; Provisional; Region: PRK11823
862908013049	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
862908013050	Walker A motif; other site
862908013051	ATP binding site [chemical binding]; other site
862908013052	Walker B motif; other site
862908013053	Subunit ChlI of Mg-chelatase; Region: ChlI; pfam13541
862908013054	PS00017 ATP/GTP-binding site motif A (P-loop).
862908013055	PLD-like domain; Region: PLDc_2; pfam13091
862908013056	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
862908013057	putative active site [active]
862908013058	catalytic site [active]
862908013059	Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239
862908013060	PLD-like domain; Region: PLDc_2; pfam13091
862908013061	putative active site [active]
862908013062	catalytic site [active]
862908013063	NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]; Region: Lig; COG0272
862908013064	NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction...; Region: LIGANc; cl03295
862908013065	nucleotide binding pocket [chemical binding]; other site
862908013066	K-X-D-G motif; other site
862908013067	catalytic site [active]
862908013068	NAD-dependent DNA ligase OB-fold domain; Region: DNA_ligase_OB; pfam03120
862908013069	NAD-dependent DNA ligase C4 zinc finger domain; Region: DNA_ligase_ZBD; pfam03119
862908013070	Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo...; Region: BRCT; cd00027
862908013071	Dimer interface [polypeptide binding]; other site
862908013072	HMMPfam hit to PF00533, BRCT, score 5.4e-12
862908013073	HMMPfam hit to PF03120, NAD-dependent DNA ligase OB-fold, score 1e-25
862908013074	HMMPfam hit to PF01653, NAD-dependent DNA ligase, score 8e-40
862908013075	PS01055 NAD-dependent DNA ligase signature 1.
862908013076	Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600
862908013077	DNA binding residues [nucleotide binding]
862908013078	Patatins and Phospholipases; Region: Patatin_and_cPLA2; cl11396
862908013079	active site
862908013080	nucleophile elbow; other site
862908013081	HMMPfam hit to PF01734, Patatin, score 2.4e-11
862908013082	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
862908013083	N-acetyl-D-glucosamine binding site [chemical binding]; other site
862908013084	catalytic residue [active]
862908013085	Signal peptide predicted for BMS3432 by SignalP 2.0 HMM (Signal peptide probability 0.673) with cleavage site probability 0.640 between residues 16 and 17
862908013086	HMMPfam hit to PF01464, SLT, score 1.5e-15
862908013087	Signal peptide predicted for BMS3433 by SignalP 2.0 HMM (Signal peptide probability 0.964) with cleavage site probability 0.452 between residues 21 and 22
862908013088	F0F1 ATP synthase subunit epsilon; Validated; Region: atpC; PRK00571
862908013089	mitochondrial ATP synthase delta subunit; Region: F1-ATPase_delta; cd12152
862908013090	gamma subunit interface [polypeptide binding]; other site
862908013091	epsilon subunit interface [polypeptide binding]; other site
862908013092	LBP interface [polypeptide binding]; other site
862908013093	HMMPfam hit to PF02823, H+-transporting two-sector ATPase, delta/epsilon subunit, score 1.3e-09
862908013094	F0F1 ATP synthase subunit beta; Validated; Region: PRK09280
862908013095	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
862908013096	F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a...; Region: F1-ATPase_beta; cd01133
862908013097	alpha subunit interaction interface [polypeptide binding]; other site
862908013098	Walker A motif; other site
862908013099	ATP binding site [chemical binding]; other site
862908013100	Walker B motif; other site
862908013101	inhibitor binding site; inhibition site
862908013102	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
862908013103	HMMPfam hit to PF00306, H+-transporting two-sector ATPase, alpha/beta subunit, C-terminal, score 4.2e-48
862908013104	HMMPfam hit to PF00006, H+-transporting two-sector ATPase, alpha/beta subunit, central region, score 5.9e-91
862908013105	PS00152 ATP synthase alpha and beta subunits signature.
862908013106	PS00017 ATP/GTP-binding site motif A (P-loop).
862908013107	HMMPfam hit to PF02874, H+-transporting two-sector ATPase, alpha/beta subunit, N-terminal, score 3.4e-30
862908013108	mitochondrial ATP synthase gamma subunit; Region: F1-ATPase_gamma; cd12151
862908013109	core domain interface [polypeptide binding]; other site
862908013110	delta subunit interface [polypeptide binding]; other site
862908013111	epsilon subunit interface [polypeptide binding]; other site
862908013112	HMMPfam hit to PF00231, H+-transporting two-sector ATPase, gamma subunit, score 2.7e-87
862908013113	PS00153 ATP synthase gamma subunit signature.
862908013114	F0F1 ATP synthase subunit alpha; Validated; Region: PRK09281
862908013115	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
862908013116	F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to...; Region: F1_ATPase_alpha; cd01132
862908013117	beta subunit interaction interface [polypeptide binding]; other site
862908013118	Walker A motif; other site
862908013119	ATP binding site [chemical binding]; other site
862908013120	Walker B motif; other site
862908013121	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
862908013122	HMMPfam hit to PF00306, H+-transporting two-sector ATPase, alpha/beta subunit, C-terminal, score 2.7e-32
862908013123	HMMPfam hit to PF00006, H+-transporting two-sector ATPase, alpha/beta subunit, central region, score 8.8e-116
862908013124	PS00152 ATP synthase alpha and beta subunits signature.
862908013125	PS00017 ATP/GTP-binding site motif A (P-loop).
862908013126	HMMPfam hit to PF02874, H+-transporting two-sector ATPase, alpha/beta subunit, N-terminal, score 9.7e-19
862908013127	F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]; Region: AtpH; cl17210
862908013128	F0F1 ATP synthase subunit delta; Provisional; Region: PRK13429
862908013129	HMMPfam hit to PF00213, H+-transporting two-sector ATPase, delta (OSCP) subunit, score 1.6e-06
862908013130	ATP synthase B/B' CF(0); Region: ATP-synt_B; pfam00430
862908013131	F0F1-type ATP synthase, subunit b [Energy production and conversion]; Region: AtpF; COG0711
862908013132	HMMPfam hit to PF00430, H+-transporting two-sector ATPase, B/B' subunit, score 6.4e-05
862908013133	ATP synthase B/B' CF(0); Region: ATP-synt_B; pfam00430
862908013134	HMMPfam hit to PF00430, H+-transporting two-sector ATPase, B/B' subunit, score 0.00018
862908013135	1 probable transmembrane helix predicted for BMS3440 by TMHMM2.0 at aa 15-37
862908013136	Polymer-forming cytoskeletal; Region: Bactofilin; pfam04519
862908013137	HMMPfam hit to PF04519, Protein of unknown function DUF583, score 1.6e-24
862908013138	ParB/RepB/Spo0J family partition protein; Region: parB_part; TIGR00180
862908013139	ParB-like nuclease domain; Region: ParB; smart00470
862908013140	KorB domain; Region: KorB; pfam08535
862908013141	HMMPfam hit to PF02195, ParB-like nuclease, score 1e-34
862908013142	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
862908013143	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
862908013144	P-loop; other site
862908013145	Magnesium ion binding site [ion binding]; other site
862908013146	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
862908013147	Magnesium ion binding site [ion binding]; other site
862908013148	HMMPfam hit to PF01656, Cobyrinic acid a,c-diamide synthase, score 4.6e-54
862908013149	rRNA small subunit methyltransferase G; Region: GidB; pfam02527
862908013150	16S rRNA methyltransferase GidB; Reviewed; Region: gidB; cl17726
862908013151	HMMPfam hit to PF02527, Glucose inhibited division protein, score 5.7e-15
862908013152	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated; Region: PRK05192
862908013153	tRNA:m(5)U-54 methyltransferase; Region: gid_trmFO; TIGR00137
862908013154	NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]; Region: Gid; COG1206
862908013155	GidA associated domain 3; Region: GIDA_assoc_3; pfam13932
862908013156	HMMPfam hit to PF01134, Glucose-inhibited division protein A, score 1.1e-154
862908013157	GTP-binding protein TrmE N-terminus; Region: TrmE_N; pfam10396
862908013158	tRNA modification GTPase TrmE; Region: mnmE_trmE_thdF; TIGR00450
862908013159	Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Region: Ras_like_GTPase; cl17170
862908013160	G1 box; other site
862908013161	GTP/Mg2+ binding site [chemical binding]; other site
862908013162	G2 box; other site
862908013163	Switch I region; other site
862908013164	G3 box; other site
862908013165	Switch II region; other site
862908013166	G4 box; other site
862908013167	Catalytic cysteine-containing C-terminus of GTPase, MnmE; Region: GTPase_Cys_C; pfam12631
862908013168	HMMPfam hit to PF01926, GTP-binding protein, HSR1-related, score 2.6e-23
862908013169	PS00017 ATP/GTP-binding site motif A (P-loop).
862908013170	membrane protein insertase; Provisional; Region: PRK01318
862908013171	membrane protein insertase, YidC/Oxa1 family, C-terminal domain; Region: yidC_oxa1_cterm; TIGR03592
862908013172	HMMPfam hit to PF02096, 60 kDa inner membrane protein, score 8.5e-96
862908013173	4 probable transmembrane helices predicted for BMS3448 by TMHMM2.0 at aa 9-26, 302-324, 371-393 and 448-470
862908013174	Ribonuclease P; Region: Ribonuclease_P; pfam00825
862908013175	HMMPfam hit to PF00825, Bacterial ribonuclease P protein, score 3.6e-10
862908013176	50S ribosomal protein L34; Reviewed; Region: rpmH; PRK00399
862908013177	HMMPfam hit to PF00468, Ribosomal protein L34, score 4.1e-16
862908013178	PS00784 Ribosomal protein L34 signature.
862908013179	Initiator Replication protein; Region: Rep_3; pfam01051