-- dump date   	20140619_000847
-- class       	Genbank::Gene
-- table       	gene_note
-- id	note
4684573	chaperone ClpB, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:Q7CEG6
4684350	chaperone ClpB, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:Q7CEG6
4684087	chaperone ClpB, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:Q7CEG6
4684968	putative RNA polymerase sigma factor, degenerate; this gene contains a frame shift which is not the result of sequencing error
4685150	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
4685052	plasmid replication initiator protein RepA, truncation
4684929	phopholipase D-family protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00614
4684569	TonB domain protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM TIGR01352
4684907	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
4684693	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to RF:NP_698118.1
4684729	L-serine dehydratase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:O86564
4684874	zinc metallopeptidase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
4684029	conserved domain protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
4683811	C-terminal frameshift; nitrogen regulatory protein P-II GlnB, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:Q52905; match to protein family HMM PF00543
4684137	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to RF:YP_033678.1
4684352	ribonuclease, Rne/Rng family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
4684596	putative major facilitator family transporter, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to RF:YP_223388.1
4684746	exonuclease, truncation; comparison of this gene to its homologs suggests this gene has been truncated; identified by similarity to RF:YP_033509.1
4684677	tRNA delta(2)-isopentenylpyrophosphate transferase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P0A3Q6; match to protein family HMM PF01715
4684961	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to RF:NP_539485.1
4683788	bacterial SH3 domain protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by match to protein family HMM PF08239
4684712	dipeptide ABC transporter, periplasmic dipeptide-binding protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00496
4684773	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to RF:YP_033983.1
4684818	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to RF:YP_033852.1
4685022	single-stranded DNA-binding protein, truncation; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:Q89A53
4684851	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to RF:YP_033518.1
4684009	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to RF:YP_033516.1
4683932	phage-related protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to RF:YP_033510.1
4684448	exonuclease, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P03697
4684683	putative autotransporter, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAW21969.1
4684503	flagellin A, truncation
4684548	putative protein parA, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:P07175
4684279	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
4684663	phage-related lysozyme, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:Q9T1T5
4684012	putative phage anti-repressor protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
4684202	L-lactate dehydrogenase [cytochrome], degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:P33232
4683828	inositol monophosphatase family protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00459
4684976	located within 2.5kb region of truncated ABC transporter-related orfs; putative peptide ABC transporter, ATP-binding protein, truncation; identified by match to protein family HMM PF00005
4683864	located within 2.5kb region of truncated ABC transporter-related orfs; putative peptide ABC transporter, permease protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
4684303	putative peptide ABC transporter, permease protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
4683821	heat-inducible transcription repressor HrcA, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:P54305; match to protein family HMM PF01628