-- dump date   	20140619_001208
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_588480.1	malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate
YP_588481.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_588482.1	identified by match to protein family HMM PF00383
YP_588483.1	identified by match to protein family HMM PF00464
YP_588484.1	identified by similarity to SP:P22783; match to protein family HMM PF00459
YP_588485.1	identified by similarity to SP:P39171; match to protein family HMM PF00266; match to protein family HMM PF01212
YP_588486.1	identified by match to protein family HMM PF00334
YP_588487.1	identified by match to protein family HMM PF04551; match to protein family HMM TIGR00612
YP_588488.1	identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442
YP_588489.2	with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis
YP_588490.1	identified by similarity to SP:P77254; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650
YP_588491.1	identified by match to protein family HMM PF00342
YP_588492.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_588493.1	ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose
YP_588494.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_588495.1	identified by similarity to SP:P19797; match to protein family HMM PF00126; match to protein family HMM PF03466
YP_588496.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_588497.1	identified by similarity to SP:P27850; match to protein family HMM PF02646
YP_588498.1	identified by match to protein family HMM PF04204; match to protein family HMM TIGR01001
YP_588499.1	identified by similarity to SP:P00482; match to protein family HMM PF01553
YP_588500.1	identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233
YP_588501.1	identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163
YP_588502.1	identified by match to protein family HMM PF01761; match to protein family HMM TIGR01357
YP_588503.1	type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_588504.1	catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome
YP_588505.1	identified by match to protein family HMM PF00597
YP_588506.1	identified by match to protein family HMM PF01722
YP_588507.1	identified by match to protein family HMM PF00275; match to protein family HMM TIGR01072
YP_588508.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037
YP_588509.1	identified by match to protein family HMM PF06295
YP_588510.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_588511.1	identified by match to protein family HMM PF00380
YP_588512.1	identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645
YP_588513.1	identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355
YP_588514.1	identified by match to protein family HMM PF01071; match to protein family HMM PF02842; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877
YP_588515.1	identified by match to protein family HMM PF00011
YP_588516.1	identified by match to protein family HMM PF01145
YP_588517.1	identified by similarity to PIR:I79276
YP_588518.1	identified by similarity to SP:P15148; match to protein family HMM PF00216
YP_588519.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_588520.1	identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693
YP_588521.1	identified by match to protein family HMM PF00899; match to protein family HMM PF05237
YP_588522.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683
YP_588523.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_588524.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR02351
YP_588526.1	identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219
YP_588527.1	functions in MreBCD complex in some organisms
YP_588528.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_588529.1	identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531
YP_588530.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_588531.1	protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function
YP_588532.1	identified by similarity to SP:P27298; match to protein family HMM PF01432
YP_588533.1	identified by similarity to SP:P37308; match to protein family HMM PF01384
YP_588534.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_588535.1	identified by similarity to SP:P10115; match to protein family HMM PF00005
YP_588536.1	putative ABC transporter, membrane protein
YP_588537.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02392
YP_588538.1	NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin
YP_588539.1	identified by match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212
YP_588540.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis
YP_588541.1	Transfers the fatty acyl group on membrane lipoproteins
YP_588542.1	identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043
YP_588543.1	identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574
YP_588544.1	identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03120; match to protein family HMM TIGR00575
YP_588545.1	identified by match to protein family HMM PF04354; match to protein family HMM TIGR02205
YP_588546.1	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139
YP_588547.1	identified by similarity to SP:P07006; match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_588548.1	Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system
YP_588549.1	identified by match to protein family HMM PF01259; match to protein family HMM TIGR00081
YP_588550.1	identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878
YP_588551.1	identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639
YP_588552.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_588553.1	identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232
YP_588554.1	identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874
YP_588555.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139
YP_588556.1	Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import
YP_588557.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00968
YP_588558.1	identified by match to protein family HMM PF00037
YP_588559.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_588560.1	identified by match to protein family HMM PF01243; match to protein family HMM TIGR00558
YP_588561.1	Transcription regulator that can both activate or repress expression
YP_588563.1	Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A)
YP_588564.1	identified by match to protein family HMM TIGR00365
YP_588565.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_588566.1	identified by similarity to SP:P02937
YP_588567.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_588568.1	identified by match to protein family HMM PF00258; match to protein family HMM TIGR01752
YP_588569.1	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486
YP_588570.1	identified by similarity to SP:P07460; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016
YP_588571.1	identified by similarity to SP:P07459; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019
YP_588572.1	identified by match to protein family HMM PF00691
YP_588574.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_588575.1	identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433
YP_588576.1	identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831
YP_588577.1	identified by match to protein family HMM PF00950
YP_588578.1	identified by match to protein family HMM PF00005
YP_588579.1	identified by similarity to SP:P28046; match to protein family HMM PF00436; match to protein family HMM TIGR00621
YP_588580.1	identified by match to protein family HMM PF01047
YP_588581.1	identified by match to protein family HMM PF00625
YP_588582.1	identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690
YP_588583.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336; match to protein family HMM TIGR00643
YP_588584.1	identified by similarity to PDB:1PUI_A; match to protein family HMM PF01926; match to protein family HMM TIGR00650
YP_588585.1	identified by similarity to SP:P00582; match to protein family HMM PF01367; match to protein family HMM PF02739
YP_588586.1	identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397
YP_588587.1	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103
YP_588588.1	molecular chaperone
YP_588589.1	identified by match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351
YP_588590.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_588591.1	identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_588592.1	identified by match to protein family HMM PF01406; match to protein family HMM TIGR00435
YP_588593.1	identified by match to protein family HMM PF00763; match to protein family HMM PF02882
YP_588594.1	identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652
YP_588595.1	YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function
YP_588596.1	identified by match to protein family HMM PF00580
YP_588597.1	responsible for the influx of magnesium ions
YP_588600.1	identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059
YP_588601.1	identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663
YP_588602.1	identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030
YP_588603.1	identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188
YP_588604.1	identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278
YP_588605.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_588606.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650
YP_588607.1	identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135
YP_588608.1	identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173
YP_588609.1	identified by match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216
YP_588610.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_588611.1	identified by match to protein family HMM PF00231; match to protein family HMM TIGR01146
YP_588612.1	identified by similarity to SP:P00822; match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR00962
YP_588613.1	identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145
YP_588614.1	identified by match to protein family HMM PF00430; match to protein family HMM TIGR01144
YP_588615.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_588616.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_588617.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_588618.1	physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator
YP_588619.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644
YP_588620.1	identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499
YP_588621.1	identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067
YP_588622.1	identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211
YP_588623.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_588624.1	identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676
YP_588625.1	identified by match to protein family HMM PF01053; match to protein family HMM TIGR02080
YP_588626.1	identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105
YP_588627.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_588628.1	heat shock protein involved in degradation of misfolded proteins
YP_588629.1	heat shock protein involved in degradation of misfolded proteins
YP_588630.1	identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419
YP_588631.1	identified by similarity to SP:P06997; match to protein family HMM PF01547; match to protein family HMM TIGR00971
YP_588632.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_588633.1	catalyzes the O-acetylation of serine
YP_588634.1	identified by similarity to SP:P37606; match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF07479
YP_588635.1	identified by match to protein family HMM PF00581
YP_588636.1	identified by match to protein family HMM PF01551
YP_588637.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_588638.1	identified by match to protein family HMM PF01149; match to protein family HMM PF06831; match to protein family HMM TIGR00577
YP_588639.1	identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023
YP_588640.1	identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009
YP_588641.1	identified by match to protein family HMM PF03755; match to protein family HMM TIGR00255
YP_588642.2	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_588643.1	identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576
YP_588644.1	identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521
YP_588645.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_588646.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_588647.1	identified by match to protein family HMM PF04219
YP_588648.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_588650.1	identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_588651.1	identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724
YP_588652.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_588653.1	identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088
YP_588654.1	identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273
YP_588655.1	identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002
YP_588656.1	identified by similarity to SP:P07019; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_588658.1	identified by match to protein family HMM PF04262; match to protein family HMM TIGR01434
YP_588659.1	identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202
YP_588660.1	identified by match to protein family HMM PF01411; match to protein family HMM PF02272; match to protein family HMM PF07973; match to protein family HMM TIGR00344
YP_588661.1	identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012
YP_588662.1	identified by match to protein family HMM PF00497
YP_588663.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_588664.1	identified by match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070
YP_588665.1	identified by match to protein family HMM PF02542; match to protein family HMM TIGR00151
YP_588666.1	identified by match to protein family HMM PF01128; match to protein family HMM TIGR00453
YP_588667.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_588668.1	may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ
YP_588669.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_588670.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470
YP_588671.1	identified by match to protein family HMM PF01507; match to protein family HMM TIGR00434; match to protein family HMM TIGR02057
YP_588672.1	hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide
YP_588673.1	catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity
YP_588674.1	identified by match to protein family HMM PF01242
YP_588676.1	identified by match to protein family HMM PF00113; match to protein family HMM PF03952; match to protein family HMM TIGR01060
YP_588677.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_588678.1	identified by match to protein family HMM PF01048; match to protein family HMM TIGR01704
YP_588679.1	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049
YP_588680.1	identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420
YP_588681.1	identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942
YP_588682.1	identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498
YP_588683.1	identified by match to protein family HMM PF02548; match to protein family HMM TIGR00222
YP_588684.1	identified by match to protein family HMM PF02569; match to protein family HMM TIGR00018
YP_588685.1	identified by match to protein family HMM PF00133; match to protein family HMM TIGR00396
YP_588686.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_588687.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_588688.1	identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717
YP_588689.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210
YP_588690.1	identified by similarity to SP:P30976; match to protein family HMM PF03099; match to protein family HMM TIGR00214
YP_588691.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_588692.2	Confers resistance to norfloxacin and enoxacin
YP_588693.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_588694.2	catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate
YP_588695.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_588696.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433
YP_588697.1	identified by similarity to SP:P12998; match to protein family HMM PF00155
YP_588698.1	identified by match to protein family HMM TIGR02072
YP_588699.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_588700.1	identified by match to protein family HMM PF00005
YP_588701.1	identified by match to protein family HMM PF00300; match to protein family HMM TIGR01258
YP_588702.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_588703.1	identified by match to protein family HMM PF00275; match to protein family HMM TIGR01356
YP_588704.1	identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017
YP_588705.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_588706.1	identified by match to protein family HMM PF03966
YP_588707.1	identified by similarity to SP:P24991; match to protein family HMM PF01323
YP_588708.1	identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670
YP_588709.1	involved in the allosteric regulation of aspartate carbamoyltransferase
YP_588710.1	identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004
YP_588711.1	member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator
YP_588712.1	identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364
YP_588713.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763
YP_588714.1	binds and unfolds substrates as part of the ClpXP protease
YP_588715.1	identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493
YP_588716.1	identified by match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115
YP_588717.1	identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433
YP_588718.1	identified by similarity to SP:P18401; match to protein family HMM PF00115
YP_588719.1	identified by similarity to SP:P18402
YP_588720.1	identified by match to protein family HMM PF01040; match to protein family HMM TIGR01473
YP_588721.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_588722.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_588723.1	identified by similarity to SP:P77718
YP_588724.1	identified by match to protein family HMM PF00348
YP_588725.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00204
YP_588726.1	identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456
YP_588727.1	identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695
YP_588728.1	identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556
YP_588729.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_588730.1	identified by similarity to SP:P06616; match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; match to protein family HMM TIGR00650
YP_588731.1	identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191
YP_588732.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_588733.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_588734.1	identified by match to protein family HMM PF00133; match to protein family HMM TIGR00422
YP_588735.1	identified by match to protein family HMM PF04364
YP_588736.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_588737.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_588738.1	HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB
YP_588739.1	identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019
YP_588740.1	identified by match to protein family HMM PF03550; match to protein family HMM TIGR00548
YP_588741.1	identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154
YP_588742.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_588743.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_588744.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_588745.1	identified by similarity to SP:P29132
YP_588746.1	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
YP_588747.1	identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740
YP_588749.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_588750.1	LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation
YP_588751.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_588752.1	identified by match to protein family HMM PF06790
YP_588753.1	identified by match to protein family HMM PF03795
YP_588754.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_588755.1	identified by similarity to SP:P08936; match to protein family HMM PF00816
YP_588756.1	putative metalloprotease
YP_588757.1	identified by similarity to SP:P23887; match to protein family HMM PF00210
YP_588758.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_588759.1	identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064
YP_588760.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_588761.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_588762.1	identified by match to protein family HMM PF00633; match to protein family HMM PF01330; match to protein family HMM PF07499; match to protein family HMM TIGR00084
YP_588763.1	identified by match to protein family HMM PF02075; match to protein family HMM TIGR00228
YP_588764.1	identified by match to protein family HMM PF00152; match to protein family HMM PF00587; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459
YP_588765.1	identified by match to protein family HMM PF02811
YP_588766.1	identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414
YP_588767.1	identified by match to protein family HMM PF03548; match to protein family HMM TIGR00547
YP_588768.1	identified by match to protein family HMM PF01580
YP_588769.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_588770.1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00008
YP_588771.1	With ArtMQJI transports arginine across the inner membrane
YP_588772.1	identified by match to protein family HMM PF00497
YP_588773.1	identified by match to protein family HMM PF00528
YP_588774.1	with ArtPQJI acts to transport arginine across the inner membrane
YP_588775.1	identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049
YP_588776.1	identified by match to protein family HMM PF00297
YP_588777.1	identified by match to protein family HMM PF00573
YP_588778.1	identified by match to protein family HMM PF00276
YP_588779.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_588780.1	identified by match to protein family HMM PF00203; match to protein family HMM TIGR01050
YP_588781.1	identified by match to protein family HMM PF00237; match to protein family HMM TIGR01044
YP_588782.1	identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009
YP_588783.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_588784.1	identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012
YP_588785.1	identified by similarity to SP:P02373; match to protein family HMM PF00366
YP_588786.1	identified by match to protein family HMM PF00238; match to protein family HMM TIGR01067
YP_588787.1	identified by match to protein family HMM TIGR01079
YP_588788.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_588789.1	identified by match to protein family HMM PF00253
YP_588790.1	identified by match to protein family HMM PF00410
YP_588791.1	identified by match to protein family HMM PF00347
YP_588792.1	identified by match to protein family HMM PF00861; match to protein family HMM TIGR00060
YP_588793.1	identified by match to protein family HMM PF00333; match to protein family HMM PF03719; match to protein family HMM TIGR01021
YP_588794.1	identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308
YP_588795.1	identified by match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071
YP_588796.1	identified by match to protein family HMM PF00344; match to protein family HMM TIGR00967
YP_588797.1	identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022
YP_588798.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_588799.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_588800.1	identified by match to protein family HMM PF00163; match to protein family HMM PF01479; match to protein family HMM TIGR01017
YP_588801.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_588802.1	identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059
YP_588803.1	catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis
YP_588804.1	involved in methylation of ribosomal protein L3
YP_588805.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_588806.1	identified by match to protein family HMM PF00109; match to protein family HMM PF02801
YP_588807.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_588808.1	identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071
YP_588809.1	identified by match to protein family HMM TIGR00515
YP_588810.1	identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499
YP_588811.1	identified by match to protein family HMM PF02674
YP_588812.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_588813.1	identified by similarity to SP:P33608; match to protein family HMM PF00361; match to protein family HMM TIGR01770
YP_588814.1	identified by similarity to SP:P31978; match to protein family HMM PF00361; match to protein family HMM TIGR01972
YP_588815.1	identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974
YP_588816.1	identified by similarity to SP:P33606; match to protein family HMM PF00420
YP_588817.1	identified by similarity to SP:P33605; match to protein family HMM PF00499
YP_588818.1	Catalyzes the transfer of electrons from NADH to quinone
YP_588819.1	identified by similarity to SP:P33603; match to protein family HMM PF00146
YP_588820.1	Catalyzes the transfer of electrons from NADH to quinone
YP_588821.1	identified by match to protein family HMM PF01512; match to protein family HMM TIGR01959
YP_588822.1	identified by similarity to SP:P33601; match to protein family HMM PF01257; match to protein family HMM TIGR01958
YP_588823.1	NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms
YP_588824.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_588825.1	identified by similarity to SP:P33597; match to protein family HMM PF00507
YP_588826.1	identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016
YP_588827.1	identified by match to protein family HMM PF01515; match to protein family HMM PF07085; match to protein family HMM TIGR00651
YP_588828.1	identified by match to protein family HMM PF00111
YP_588829.1	B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA
YP_588830.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_588831.1	identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063
YP_588832.1	identified by match to protein family HMM PF01820; match to protein family HMM PF07478; match to protein family HMM TIGR01205
YP_588833.1	identified by similarity to SP:P02426; match to protein family HMM PF01386
YP_588834.1	identified by match to protein family HMM PF00877
YP_588835.1	Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues
YP_588836.1	identified by match to protein family HMM PF00324
YP_588837.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_588838.1	identified by match to protein family HMM PF00692; match to protein family HMM TIGR02274
YP_588839.1	identified by match to protein family HMM PF00133; match to protein family HMM TIGR00398
YP_588840.1	identified by match to protein family HMM PF00393; match to protein family HMM PF03446; match to protein family HMM TIGR00873
YP_588841.1	identified by match to protein family HMM PF01502; match to protein family HMM PF01503
YP_588842.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_588843.1	identified by match to protein family HMM PF00977; match to protein family HMM TIGR00007
YP_588844.1	identified by match to protein family HMM PF00117; match to protein family HMM TIGR01855
YP_588845.1	catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate
YP_588846.1	identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141
YP_588847.1	identified by match to protein family HMM PF00815; match to protein family HMM TIGR00069
YP_588848.1	long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors
YP_588849.1	identified by match to protein family HMM PF00753
YP_588850.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_588851.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_588852.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_588853.1	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP
YP_588854.1	identified by similarity to GB:CAG74654.1
YP_588855.1	identified by match to protein family HMM TIGR02097
YP_588856.1	identified by match to protein family HMM PF04358
YP_588857.1	identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460
YP_588858.1	identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079
YP_588859.1	identified by match to protein family HMM PF01300
YP_588860.1	identified by match to protein family HMM PF01488; match to protein family HMM TIGR00507
YP_588861.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176
YP_588862.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_588863.1	identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420
YP_588864.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_588865.1	identified by similarity to SP:P75958; match to protein family HMM PF02687; match to protein family HMM TIGR02212
YP_588866.1	identified by similarity to SP:P75957; match to protein family HMM PF00005; match to protein family HMM TIGR02211
YP_588867.2	identified by similarity to SP:P75956; match to protein family HMM PF02687; match to protein family HMM TIGR02212
YP_588868.1	identified by similarity to GB:CAH21689.1
YP_588869.1	identified by match to protein family HMM PF01230
YP_588870.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_588871.1	identified by similarity to SP:P28631
YP_588872.1	identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041
YP_588873.1	identified by match to protein family HMM PF01063
YP_588874.1	identified by match to protein family HMM PF00550; match to protein family HMM TIGR00517
YP_588875.1	identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830
YP_588876.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_588877.1	identified by match to protein family HMM TIGR00747
YP_588879.1	identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031
YP_588880.1	identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_588881.1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
YP_588882.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_588883.1	SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane
YP_588884.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_588885.1	blocks the formation of polar Z-ring septums
YP_588886.1	identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968
YP_588887.1	identified by match to protein family HMM PF03776; match to protein family HMM TIGR01215
YP_588888.1	identified by match to protein family HMM PF00814
YP_588889.1	identified by match to protein family HMM PF03734
YP_588890.1	hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel
YP_588891.1	identified by match to protein family HMM PF03609; match to protein family HMM TIGR00822
YP_588892.1	identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824; match to protein family HMM TIGR00854
YP_588893.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03741
YP_588894.1	identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553
YP_588895.1	identified by similarity to GB:CAG74686.1; match to protein family HMM PF00581
YP_588896.1	identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464
YP_588897.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_588898.1	identified by match to protein family HMM PF00529
YP_588899.1	Acts with SufS to catalyze the formation of L-alanine from L-cysteine
YP_588900.1	identified by similarity to SP:Q9EXP2; match to protein family HMM PF00266; match to protein family HMM TIGR01979
YP_588901.1	with SufBC activates cysteine desulfurase SufS
YP_588902.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978
YP_588903.1	with SufCD activates cysteine desulfurase SufS
YP_588904.1	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049
YP_588905.1	identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472
YP_588906.1	identified by match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468
YP_588907.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_588908.1	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001
YP_588909.1	identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168
YP_588910.1	identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF07973; match to protein family HMM TIGR00418
YP_588911.1	identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406
YP_588912.1	identified by match to protein family HMM PF00075
YP_588913.1	identified by match to protein family HMM PF00753
YP_588914.1	identified by match to protein family HMM PF03372
YP_588915.1	identified by similarity to SP:P52066; match to protein family HMM PF01464
YP_588916.1	identified by match to protein family HMM PF04362
YP_588917.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539
YP_588918.1	identified by match to protein family HMM PF02622
YP_588919.1	identified by match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM TIGR01380
YP_588920.1	identified by similarity to SP:P00448; match to protein family HMM PF00081; match to protein family HMM PF02777
YP_588921.1	identified by similarity to SP:P46847; match to protein family HMM PF01106; match to protein family HMM PF01521
YP_588922.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR01738
YP_588923.1	identified by match to protein family HMM PF01475
YP_588924.1	identified by match to protein family HMM PF02635
YP_588925.1	identified by match to protein family HMM PF02635
YP_588926.1	in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs
YP_588927.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_588928.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_588929.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484
YP_588930.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_588931.1	identified by match to protein family HMM PF00584; match to protein family HMM TIGR00964
YP_588932.1	identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922
YP_588933.1	identified by match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632
YP_588934.1	identified by match to protein family HMM PF00687; match to protein family HMM TIGR01169
YP_588935.1	identified by match to protein family HMM PF00466
YP_588936.1	identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855
YP_588937.1	identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04565; match to protein family HMM TIGR02013
YP_588938.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_588939.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02873; match to protein family HMM TIGR00179
YP_588940.1	identified by similarity to SP:P06709; match to protein family HMM PF03099; match to protein family HMM TIGR00121
YP_588941.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350
YP_588942.1	identified by match to protein family HMM PF00198; match to protein family HMM PF02817
YP_588943.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_588944.1	identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078
YP_588945.1	identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152
YP_588947.1	identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065
YP_588948.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01082
YP_588949.1	identified by match to protein family HMM PF03033; match to protein family HMM PF04101; match to protein family HMM TIGR01133
YP_588950.1	identified by match to protein family HMM PF02875; match to protein family HMM TIGR01087
YP_588951.1	identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445
YP_588952.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143
YP_588953.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_588954.1	This ORF has a isoleucine start site.; identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_588955.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_588956.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_588957.1	identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011
YP_588958.1	identified by match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116
YP_588959.1	identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075
YP_588960.1	identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496
YP_588961.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_588962.1	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055
YP_588963.1	catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate
YP_588964.1	identified by similarity to SP:P37764; match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054
YP_588965.1	identified by match to protein family HMM PF01103; match to protein family HMM PF07244
YP_588966.1	identified by similarity to SP:P31519; match to protein family HMM PF03938
YP_588967.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_588968.1	identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594
YP_588969.1	identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513
YP_588970.1	identified by match to protein family HMM PF01053; match to protein family HMM TIGR01324
YP_588971.1	MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair
YP_588972.1	identified by similarity to SP:Q46930; match to protein family HMM PF00293
YP_588973.1	identified by similarity to SP:P37149; match to protein family HMM PF01790; match to protein family HMM TIGR00544
YP_588974.1	identified by match to protein family HMM PF00303
YP_588975.1	identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450
YP_588976.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609
YP_588977.1	identified by match to protein family HMM TIGR01447
YP_588978.1	complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons
YP_588979.1	identified by similarity to SP:P00903; match to protein family HMM PF00117; match to protein family HMM TIGR00566
YP_588980.1	identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665
YP_588981.1	identified by similarity to SP:P04475; match to protein family HMM PF00012; match to protein family HMM TIGR02350
YP_588982.1	identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349
YP_588983.1	identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029
YP_588984.1	identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083
YP_588985.1	identified by match to protein family HMM PF00133; match to protein family HMM PF06827; match to protein family HMM TIGR00392
YP_588986.1	identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077
YP_588987.1	identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216
YP_588988.1	identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368
YP_588989.1	identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369
YP_588990.1	identified by match to protein family HMM PF00186
YP_588991.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_588992.1	identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755
YP_588993.1	identified by match to protein family HMM PF04166; match to protein family HMM TIGR00557
YP_588994.1	identified by similarity to SP:P21202; match to protein family HMM PF00639
YP_588995.1	identified by match to protein family HMM PF04355
YP_588996.1	identified by match to protein family HMM PF03658
YP_588997.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_588998.1	catalyzes the formation of AMP from adenosine-3',5'-bisphosphate
YP_588999.1	identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158
YP_589000.1	identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165
YP_589001.1	binds single-stranded DNA at the primosome assembly site
YP_589002.1	identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166
YP_589003.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186
YP_589004.1	identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063
YP_589005.1	identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184
YP_589006.1	with HflK inhibits proteolysis of lambda cII protein by FtsH
YP_589007.1	identified by match to protein family HMM PF01145; match to protein family HMM TIGR01933
YP_589008.1	identified by match to protein family HMM PF01926
YP_589009.1	identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383
YP_589011.1	identified by match to protein family HMM PF01715; match to protein family HMM TIGR00174
YP_589012.1	identified by similarity to SP:P23367; match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585
YP_589013.1	identified by match to protein family HMM PF01520
YP_589014.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_589015.1	identified by match to protein family HMM PF02666; match to protein family HMM TIGR00163
YP_589016.1	identified by match to protein family HMM PF00152; match to protein family HMM TIGR00462
YP_589017.1	identified by match to protein family HMM PF01132; match to protein family HMM TIGR00038
YP_589018.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238
YP_589019.1	identified by match to protein family HMM PF00118; match to protein family HMM TIGR02348
YP_589020.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_589021.1	catalyzes the formation of fumarate from aspartate
YP_589022.1	identified by match to protein family HMM PF00578
YP_589023.1	identified by match to protein family HMM PF02547; match to protein family HMM TIGR00113
YP_589024.1	identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449
YP_589025.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_589026.1	identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129
YP_589027.1	identified by match to protein family HMM PF02355; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966
YP_589028.1	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326
YP_589029.1	identified by match to protein family HMM PF00885; match to protein family HMM TIGR00114
YP_589030.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_589031.1	catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP
YP_589032.1	identified by match to protein family HMM PF04608
YP_589033.1	identified by match to protein family HMM PF01103
YP_589034.1	identified by similarity to GB:CAH19693.1; match to protein family HMM PF04357
YP_589035.1	identified by match to protein family HMM PF00719
YP_589036.1	identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00409
YP_589037.1	identified by match to protein family HMM PF01513
YP_589038.1	identified by match to protein family HMM PF01025
YP_589039.1	identified by match to protein family HMM PF03167; match to protein family HMM TIGR00628
YP_589040.1	identified by match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR00551
YP_589041.1	identified by similarity to SP:P00579; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04546; match to protein family HMM TIGR02393
YP_589042.1	identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391
YP_589043.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_589044.1	identified by match to protein family HMM PF00814; match to protein family HMM TIGR00329
YP_589045.1	identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526
YP_589046.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_589047.1	catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases
YP_589048.1	DHBP synthase; functions during riboflavin biosynthesis
YP_589049.1	identified by similarity to SP:P26647; match to protein family HMM PF01553; match to protein family HMM TIGR00530
YP_589050.1	identified by similarity to SP:P28632
YP_589051.1	identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880
YP_589052.1	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726
YP_589053.1	identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952
YP_589054.1	identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431
YP_589055.1	identified by match to protein family HMM PF02033; match to protein family HMM TIGR00082
YP_589056.1	identified by match to protein family HMM PF00009; match to protein family HMM PF01926; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487
YP_589057.1	identified by similarity to SP:P03003; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM TIGR01953; match to protein family HMM TIGR01954
YP_589058.1	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810
YP_589059.1	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455
YP_589060.1	identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_589061.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241
YP_589062.1	identified by similarity to SP:P28692; match to protein family HMM PF01728
YP_589063.1	identified by similarity to SP:P21346; match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462
YP_589064.1	penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains
YP_589065.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_589066.1	involved in the peptidyltransferase reaction during translation
YP_589067.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_589068.1	identified by match to protein family HMM PF00162
YP_589069.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_589070.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_589071.1	identified by match to protein family HMM PF01812
YP_589072.1	catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine
YP_589073.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_589074.1	identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302