-- dump date 20140619_002022 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 580050000001 SEQ_END SEQ_END NC_012814.1 1938709 1938709 DR NC_012814.1; contig end 1938709..1938709 Bifidobacterium animalis subsp. lactis Bl-04 YP_002967461.1 CDS dnaA NC_012814.1 134 1885 D COG0593 ATPase involved in DNA replication initiation; ATPase for DNA replication initiation 134..1885 Bifidobacterium animalis subsp. lactis Bl-04 8009622 YP_002967462.1 CDS Balac_0002 NC_012814.1 2489 3613 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2489..3613 Bifidobacterium animalis subsp. lactis Bl-04 8007993 YP_002967463.1 CDS Balac_0003 NC_012814.1 3659 5086 D COG1195 Recombinational DNA repair ATPase (RecF pathway); recombination protein RecF 3659..5086 Bifidobacterium animalis subsp. lactis Bl-04 8007994 YP_002967464.1 CDS Balac_0004 NC_012814.1 5083 5586 D COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives; hypothetical protein 5083..5586 Bifidobacterium animalis subsp. lactis Bl-04 8007995 YP_002967465.1 CDS gyrB NC_012814.1 5777 7894 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 5777..7894 Bifidobacterium animalis subsp. lactis Bl-04 8007996 YP_002967466.1 CDS Balac_0006 NC_012814.1 7963 10725 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 7963..10725 Bifidobacterium animalis subsp. lactis Bl-04 8007997 YP_002967467.1 CDS Balac_0007 NC_012814.1 10851 11387 D hypothetical protein 10851..11387 Bifidobacterium animalis subsp. lactis Bl-04 8007998 YP_002967468.1 CDS Balac_0008 NC_012814.1 11591 12664 D COG4767 Glycopeptide antibiotics resistance protein; hypothetical protein 11591..12664 Bifidobacterium animalis subsp. lactis Bl-04 8007999 YP_002967469.1 CDS Balac_0009 NC_012814.1 12745 13539 R COG1272 Predicted membrane protein, hemolysin III homolog; putative hemolysin III-like membrane protein complement(12745..13539) Bifidobacterium animalis subsp. lactis Bl-04 8008000 YP_002967470.1 CDS Balac_0010 NC_012814.1 14018 15364 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(14018..15364) Bifidobacterium animalis subsp. lactis Bl-04 8008001 YP_002967471.1 CDS Balac_0011 NC_012814.1 15477 16799 R COG0477 Permeases of the major facilitator superfamily; multidrug transport protein complement(15477..16799) Bifidobacterium animalis subsp. lactis Bl-04 8008002 YP_002967472.1 CDS Balac_0012 NC_012814.1 16847 16990 D hypothetical protein 16847..16990 Bifidobacterium animalis subsp. lactis Bl-04 8008003 YP_002967473.1 CDS Balac_0013 NC_012814.1 16983 18170 D mannan endo-1,4-beta-mannosidase 16983..18170 Bifidobacterium animalis subsp. lactis Bl-04 8008004 YP_002967474.1 CDS Balac_0014 NC_012814.1 18418 18918 D COG1970 Large-conductance mechanosensitive channel; large-conductance mechanosensitive channel 18418..18918 Bifidobacterium animalis subsp. lactis Bl-04 8008005 YP_002967475.1 CDS Balac_0015 NC_012814.1 19174 19449 D COG2308 Uncharacterized conserved protein; hypothetical protein 19174..19449 Bifidobacterium animalis subsp. lactis Bl-04 8008006 YP_002967476.1 CDS Balac_0018 NC_012814.1 19968 20732 D COG1451 Predicted metal-dependent hydrolase; hypothetical protein 19968..20732 Bifidobacterium animalis subsp. lactis Bl-04 8009559 YP_002967477.1 CDS Balac_0019 NC_012814.1 20757 21182 R membrane-anchored glycerophosphoryl diesterphosphodiesterase-like protein complement(20757..21182) Bifidobacterium animalis subsp. lactis Bl-04 8008008 YP_002967478.1 CDS Balac_0020 NC_012814.1 21820 22608 R COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen; putative transcriptional regulator complement(21820..22608) Bifidobacterium animalis subsp. lactis Bl-04 8008009 YP_002967479.1 CDS Balac_0021 NC_012814.1 22644 22898 D hypothetical protein 22644..22898 Bifidobacterium animalis subsp. lactis Bl-04 8008010 YP_002967480.1 CDS Balac_0022 NC_012814.1 23538 26039 D COG0178 Excinuclease ATPase subunit; ABC transporter 23538..26039 Bifidobacterium animalis subsp. lactis Bl-04 8008011 YP_002967481.1 CDS Balac_0023 NC_012814.1 26398 27153 D COG0500 SAM-dependent methyltransferases; methyltransferase 26398..27153 Bifidobacterium animalis subsp. lactis Bl-04 8008012 YP_002967482.1 CDS Balac_0024 NC_012814.1 27202 28116 D hypothetical protein 27202..28116 Bifidobacterium animalis subsp. lactis Bl-04 8008013 YP_002967483.1 CDS Balac_0025 NC_012814.1 28439 29038 D COG0431 Predicted flavoprotein; oxidoreductase 28439..29038 Bifidobacterium animalis subsp. lactis Bl-04 8008014 YP_002967484.1 CDS Balac_0026 NC_012814.1 29241 29954 D hypothetical protein 29241..29954 Bifidobacterium animalis subsp. lactis Bl-04 8008015 YP_002967485.1 CDS Balac_0027 NC_012814.1 30678 30914 D COG1198 Primosomal protein N (replication factor Y - superfamily II helicase); hypothetical protein 30678..30914 Bifidobacterium animalis subsp. lactis Bl-04 8008016 YP_002967486.1 CDS Balac_0028 NC_012814.1 31096 31371 D hypothetical protein 31096..31371 Bifidobacterium animalis subsp. lactis Bl-04 8008017 YP_002967487.1 CDS Balac_0029 NC_012814.1 31555 31824 D hypothetical protein 31555..31824 Bifidobacterium animalis subsp. lactis Bl-04 8008018 YP_002967488.1 CDS Balac_0030 NC_012814.1 31962 32285 R COG1694 Predicted pyrophosphatase; MazG nucleotide pyrophosphohydrolase domain-containing protein complement(31962..32285) Bifidobacterium animalis subsp. lactis Bl-04 8008019 YP_002967489.1 CDS Balac_0031 NC_012814.1 32313 32663 D hypothetical protein 32313..32663 Bifidobacterium animalis subsp. lactis Bl-04 8008020 YP_002967490.1 CDS Balac_0032 NC_012814.1 32673 33755 D hypothetical protein 32673..33755 Bifidobacterium animalis subsp. lactis Bl-04 8008021 YP_002967491.1 CDS Balac_0033 NC_012814.1 33890 34099 D hypothetical protein 33890..34099 Bifidobacterium animalis subsp. lactis Bl-04 8008022 YP_002967492.1 CDS Balac_0034 NC_012814.1 34600 35961 D COG0270 Site-specific DNA methylase; site-specific DNA-methyltransferase 34600..35961 Bifidobacterium animalis subsp. lactis Bl-04 8008023 YP_002967493.1 CDS Balac_0035 NC_012814.1 36056 36901 R hypothetical protein complement(36056..36901) Bifidobacterium animalis subsp. lactis Bl-04 8008024 YP_002967494.1 CDS Balac_0036 NC_012814.1 37469 39892 D hypothetical protein 37469..39892 Bifidobacterium animalis subsp. lactis Bl-04 8008025 YP_002967495.1 CDS Balac_0037 NC_012814.1 39920 40501 R hypothetical protein complement(39920..40501) Bifidobacterium animalis subsp. lactis Bl-04 8008026 YP_002967496.1 CDS Balac_0038 NC_012814.1 40482 42617 R hypothetical protein complement(40482..42617) Bifidobacterium animalis subsp. lactis Bl-04 8008027 YP_002967497.1 CDS Balac_0039 NC_012814.1 42959 43327 D hypothetical protein 42959..43327 Bifidobacterium animalis subsp. lactis Bl-04 8008028 YP_002967498.1 CDS Balac_0040 NC_012814.1 43526 43639 D hypothetical protein 43526..43639 Bifidobacterium animalis subsp. lactis Bl-04 8008029 YP_002967499.1 CDS Balac_0041 NC_012814.1 44261 44464 D hypothetical protein 44261..44464 Bifidobacterium animalis subsp. lactis Bl-04 8008030 YP_002967500.1 CDS Balac_0042 NC_012814.1 44728 44958 R COG3041 Uncharacterized protein conserved in bacteria; hypothetical protein complement(44728..44958) Bifidobacterium animalis subsp. lactis Bl-04 8008031 YP_002967501.1 CDS Balac_0043 NC_012814.1 45029 45178 R hypothetical protein complement(45029..45178) Bifidobacterium animalis subsp. lactis Bl-04 8008032 YP_002967502.1 CDS Balac_0044 NC_012814.1 45214 45474 D COG2336 Growth regulator; hypothetical protein 45214..45474 Bifidobacterium animalis subsp. lactis Bl-04 8008033 YP_002967503.1 CDS Balac_0045 NC_012814.1 45476 45859 D COG2337 Growth inhibitor; transcriptional modulator of MazE/toxin, MazF 45476..45859 Bifidobacterium animalis subsp. lactis Bl-04 8008034 YP_002967504.1 CDS Balac_0046 NC_012814.1 46047 46937 R COG0583 Transcriptional regulator; transcriptional regulator complement(46047..46937) Bifidobacterium animalis subsp. lactis Bl-04 8008035 YP_002967505.1 CDS Balac_0047 NC_012814.1 47066 47329 D COG0656 Aldo/keto reductases, related to diketogulonate reductase; aldo/keto reductase 47066..47329 Bifidobacterium animalis subsp. lactis Bl-04 8008036 YP_002967506.1 CDS Balac_0048 NC_012814.1 47292 47942 D COG0656 Aldo/keto reductases, related to diketogulonate reductase; aldo/keto reductase 47292..47942 Bifidobacterium animalis subsp. lactis Bl-04 8008037 YP_002967507.1 CDS Balac_0049 NC_012814.1 48034 50283 R COG1472 Beta-glucosidase-related glycosidases; putative beta-glucosidase complement(48034..50283) Bifidobacterium animalis subsp. lactis Bl-04 8008038 YP_002967508.1 CDS Balac_0050 NC_012814.1 51542 51979 D hypothetical protein 51542..51979 Bifidobacterium animalis subsp. lactis Bl-04 8008039 YP_002967509.1 CDS Balac_0051 NC_012814.1 52309 53442 R COG3464 Transposase and inactivated derivatives; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(52309..53442) Bifidobacterium animalis subsp. lactis Bl-04 8008040 YP_002967510.1 CDS Balac_0052 NC_012814.1 53714 55240 D COG5520 O-Glycosyl hydrolase; glycoside hydrolase family protein 53714..55240 Bifidobacterium animalis subsp. lactis Bl-04 8008041 YP_002967511.1 CDS Balac_0053 NC_012814.1 55366 57471 R COG1874 Beta-galactosidase; beta-galactosidase I complement(55366..57471) Bifidobacterium animalis subsp. lactis Bl-04 8008042 YP_002967512.1 CDS Balac_0054 NC_012814.1 57881 59035 D COG0477 Permeases of the major facilitator superfamily; glycoside-Pentoside-hexuronide 57881..59035 Bifidobacterium animalis subsp. lactis Bl-04 8008043 YP_002967513.1 CDS Balac_0055 NC_012814.1 59090 59731 R COG1309 Transcriptional regulator; TetR family transcriptional regulator complement(59090..59731) Bifidobacterium animalis subsp. lactis Bl-04 8008044 YP_002967514.1 CDS Balac_0056 NC_012814.1 59884 60366 R COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); DNA-binding ferritin-like protein for protection from oxidative damage complement(59884..60366) Bifidobacterium animalis subsp. lactis Bl-04 8008045 YP_002967515.1 CDS Balac_0057 NC_012814.1 60491 61846 R COG1253 Hemolysins and related proteins containing CBS domains; hemolysin-like protein complement(60491..61846) Bifidobacterium animalis subsp. lactis Bl-04 8008046 YP_002967516.1 CDS Balac_0058 NC_012814.1 62130 62759 R COG0288 Carbonic anhydrase; carbonic anhydrase complement(62130..62759) Bifidobacterium animalis subsp. lactis Bl-04 8008047 YP_002967517.1 CDS Balac_0059 NC_012814.1 62901 64016 D COG1609 Transcriptional regulators; LacI-type transcriptional regulator 62901..64016 Bifidobacterium animalis subsp. lactis Bl-04 8008048 YP_002967518.1 CDS Balac_0060 NC_012814.1 64069 64296 R hypothetical protein complement(64069..64296) Bifidobacterium animalis subsp. lactis Bl-04 8008049 YP_002967519.1 CDS Balac_0061 NC_012814.1 64454 64624 R COG4214 ABC-type xylose transport system, permease component; ABC-type xylose transport system permease complement(64454..64624) Bifidobacterium animalis subsp. lactis Bl-04 8008050 YP_002967520.1 CDS Balac_0062 NC_012814.1 64619 65323 D COG1129 ABC-type sugar transport system, ATPase component; pentose ABC transporter ATP binding protein 64619..65323 Bifidobacterium animalis subsp. lactis Bl-04 8008051 YP_002967521.1 CDS Balac_0063 NC_012814.1 65524 65865 D hypothetical protein 65524..65865 Bifidobacterium animalis subsp. lactis Bl-04 8008052 YP_002967522.1 CDS Balac_0064 NC_012814.1 65860 66894 R COG1609 Transcriptional regulators; RbsR-type transcription regulator/ ribose operon repressor complement(65860..66894) Bifidobacterium animalis subsp. lactis Bl-04 8008053 YP_002967523.1 CDS Balac_0065 NC_012814.1 67012 68553 R COG3534 Alpha-L-arabinofuranosidase; alpha-L-arabinofuranosidase complement(67012..68553) Bifidobacterium animalis subsp. lactis Bl-04 8008054 YP_002967524.1 CDS Balac_0066 NC_012814.1 68830 70491 D COG1070 Sugar (pentulose and hexulose kinases); sugar kinase 68830..70491 Bifidobacterium animalis subsp. lactis Bl-04 8008055 YP_002967525.1 CDS Balac_0067 NC_012814.1 70547 71239 D catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate; L-ribulose-5-phosphate 4-epimerase 70547..71239 Bifidobacterium animalis subsp. lactis Bl-04 8008056 YP_002967526.1 CDS Balac_0068 NC_012814.1 71503 73020 D catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 71503..73020 Bifidobacterium animalis subsp. lactis Bl-04 8008057 YP_002967527.1 CDS Balac_0069 NC_012814.1 73155 74018 D COG0656 Aldo/keto reductases, related to diketogulonate reductase; dehydrogenase or reductase protein 73155..74018 Bifidobacterium animalis subsp. lactis Bl-04 8008058 YP_002967528.1 CDS Balac_0070 NC_012814.1 74259 77015 R COG2352 Phosphoenolpyruvate carboxylase; hypothetical protein complement(74259..77015) Bifidobacterium animalis subsp. lactis Bl-04 8008059 YP_002967529.1 CDS Balac_0071 NC_012814.1 77254 79002 D COG2966 Uncharacterized conserved protein; hypothetical protein 77254..79002 Bifidobacterium animalis subsp. lactis Bl-04 8008060 YP_002967530.1 CDS Balac_0072 NC_012814.1 79093 80226 R COG3464 Transposase and inactivated derivatives; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(79093..80226) Bifidobacterium animalis subsp. lactis Bl-04 8008061 YP_002967531.1 CDS Balac_0073 NC_012814.1 80579 81682 R COG0180 Tryptophanyl-tRNA synthetase; Tryptophanyl-tRNA synthetase complement(80579..81682) Bifidobacterium animalis subsp. lactis Bl-04 8008062 YP_002967532.1 CDS Balac_0074 NC_012814.1 81843 82190 D hypothetical protein 81843..82190 Bifidobacterium animalis subsp. lactis Bl-04 8008063 YP_002967533.1 CDS Balac_0075 NC_012814.1 82389 82772 R hypothetical protein complement(82389..82772) Bifidobacterium animalis subsp. lactis Bl-04 8008064 YP_002967534.1 CDS Balac_0076 NC_012814.1 83374 85830 D COG0058 Glucan phosphorylase; glycogen phosphorylase 83374..85830 Bifidobacterium animalis subsp. lactis Bl-04 8008065 YP_002967535.1 CDS Balac_0077 NC_012814.1 86071 86298 R hypothetical protein complement(86071..86298) Bifidobacterium animalis subsp. lactis Bl-04 8008066 YP_002967536.1 CDS Balac_0078 NC_012814.1 86641 87342 D COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); rhomboid family membrane protein 86641..87342 Bifidobacterium animalis subsp. lactis Bl-04 8008067 YP_002967537.1 CDS Balac_0079 NC_012814.1 88340 89746 D COG0500 SAM-dependent methyltransferases; N6-adenine-specific methylase 88340..89746 Bifidobacterium animalis subsp. lactis Bl-04 8008068 YP_002967538.1 CDS Balac_0080 NC_012814.1 90000 90575 R integral membrane protein involved in inhibition of the Z-ring formation; putative septation inhibitor protein complement(90000..90575) Bifidobacterium animalis subsp. lactis Bl-04 8008069 YP_002967539.1 CDS Balac_0081 NC_012814.1 90682 91479 D COG3879 Uncharacterized protein conserved in bacteria; hypothetical protein 90682..91479 Bifidobacterium animalis subsp. lactis Bl-04 8008070 YP_002967540.1 CDS Balac_0082 NC_012814.1 91567 92721 D COG3764 Sortase (surface protein transpeptidase); hypothetical protein 91567..92721 Bifidobacterium animalis subsp. lactis Bl-04 8008071 YP_002967541.1 CDS Balac_0083 NC_012814.1 92962 93609 D COG0512 Anthranilate/para-aminobenzoate synthases component II; Para-aminobenzoate synthase glutamineamidotransferase component II 92962..93609 Bifidobacterium animalis subsp. lactis Bl-04 8008072 YP_002967542.1 CDS Balac_0084 NC_012814.1 93919 96051 R COG0515 Serine/threonine protein kinase; serine-threonine protein kinase complement(93919..96051) Bifidobacterium animalis subsp. lactis Bl-04 8008073 YP_002967543.1 CDS Balac_0085 NC_012814.1 96044 97069 R COG0515 Serine/threonine protein kinase; serine-threonine protein kinase complement(96044..97069) Bifidobacterium animalis subsp. lactis Bl-04 8008074 YP_002967544.1 CDS Balac_0086 NC_012814.1 97066 98532 R COG0768 Cell division proteinFtsI/penicillin-binding protein 2; penicillin binding protein transpeptidase complement(97066..98532) Bifidobacterium animalis subsp. lactis Bl-04 8008075 YP_002967545.1 CDS Balac_0087 NC_012814.1 98525 100267 R COG0772 Bacterial cell division membrane protein; cell division membrane protein complement(98525..100267) Bifidobacterium animalis subsp. lactis Bl-04 8008076 YP_002967546.1 CDS Balac_0088 NC_012814.1 100270 101808 R COG0631 Serine/threonine protein phosphatase; phosphoprotein phosphatase complement(100270..101808) Bifidobacterium animalis subsp. lactis Bl-04 8008077 YP_002967547.1 CDS Balac_0089 NC_012814.1 101830 102375 R COG1716 FOG: FHA domain; hypothetical protein complement(101830..102375) Bifidobacterium animalis subsp. lactis Bl-04 8008078 YP_002967548.1 CDS Balac_0090 NC_012814.1 102394 103095 R COG1716 FOG: FHA domain; hypothetical protein complement(102394..103095) Bifidobacterium animalis subsp. lactis Bl-04 8008079 YP_002967549.1 CDS Balac_0091 NC_012814.1 103860 106274 D COG1506 Dipeptidylaminopeptidases/acylaminoacyl-peptidases; Dipeptidylaminopeptidase/acylaminoacyl- peptidase 103860..106274 Bifidobacterium animalis subsp. lactis Bl-04 8008080 YP_002967550.1 CDS Balac_0092 NC_012814.1 106313 107365 R COG0697 Permeases of the drug/metabolite transporter (DMT superfamily); putative permease complement(106313..107365) Bifidobacterium animalis subsp. lactis Bl-04 8008081 YP_002967551.1 CDS Balac_0093 NC_012814.1 107450 108535 R COG2267 Lysophospholipase; hypothetical protein complement(107450..108535) Bifidobacterium animalis subsp. lactis Bl-04 8008082 YP_002967552.1 CDS Balac_0094 NC_012814.1 108714 109052 D hypothetical protein 108714..109052 Bifidobacterium animalis subsp. lactis Bl-04 8008083 YP_002967553.1 CDS Balac_0095 NC_012814.1 109132 110085 D COG0500 SAM-dependent methyltransferases; methyltransferase 109132..110085 Bifidobacterium animalis subsp. lactis Bl-04 8008084 YP_002967554.1 CDS Balac_0096 NC_012814.1 110587 110841 R COG2261 Predicted membrane protein; hypothetical protein complement(110587..110841) Bifidobacterium animalis subsp. lactis Bl-04 8008085 YP_002967555.1 CDS Balac_0097 NC_012814.1 111113 111370 R COG2261 Predicted membrane protein; hypothetical protein complement(111113..111370) Bifidobacterium animalis subsp. lactis Bl-04 8008086 YP_002967556.1 CDS Balac_0099 NC_012814.1 112141 113589 R COG0493 NADPH-dependent glutamate synthase betachain and related oxidoreductases; ferredoxin/ferredoxin-NADP reductase complement(112141..113589) Bifidobacterium animalis subsp. lactis Bl-04 8009560 YP_002967557.1 CDS Balac_0100 NC_012814.1 113779 116013 R COG2217 Cation transport ATPase; cation-transporting ATPase V complement(113779..116013) Bifidobacterium animalis subsp. lactis Bl-04 8008088 YP_002967558.1 CDS Balac_0101 NC_012814.1 116322 118163 R COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; DO serine protease complement(116322..118163) Bifidobacterium animalis subsp. lactis Bl-04 8008089 YP_002967559.1 CDS Balac_0102 NC_012814.1 118338 118952 D COG1011 Predicted hydrolase (HAD superfamily); alpha beta hydrolase 118338..118952 Bifidobacterium animalis subsp. lactis Bl-04 8008090 YP_002967560.1 CDS Balac_0103 NC_012814.1 119450 120979 D COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 119450..120979 Bifidobacterium animalis subsp. lactis Bl-04 8008091 YP_002967561.1 CDS Balac_0104 NC_012814.1 121079 122416 D COG0343 Queuine/archaeosine tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 121079..122416 Bifidobacterium animalis subsp. lactis Bl-04 8008092 YP_002967562.1 CDS Balac_0106 NC_012814.1 122644 123615 R putative metalloprotease; heat shock protein HtpX complement(122644..123615) Bifidobacterium animalis subsp. lactis Bl-04 8009561 YP_002967563.1 CDS Balac_0107 NC_012814.1 123665 124825 R hypothetical protein complement(123665..124825) Bifidobacterium animalis subsp. lactis Bl-04 8008094 YP_002967564.1 CDS Balac_0108 NC_012814.1 124983 125624 D COG2135 Uncharacterized conserved protein; hypothetical protein 124983..125624 Bifidobacterium animalis subsp. lactis Bl-04 8008095 YP_002967565.1 CDS Balac_0109 NC_012814.1 125727 126971 D COG2814 Arabinose efflux permease; AraJ-like protein 125727..126971 Bifidobacterium animalis subsp. lactis Bl-04 8008096 YP_002967566.1 CDS Balac_0110 NC_012814.1 127054 127317 R hypothetical protein complement(127054..127317) Bifidobacterium animalis subsp. lactis Bl-04 8008097 YP_002967567.1 CDS Balac_0111 NC_012814.1 127630 127935 R COG3077 DNA-damage-inducible protein J; hypothetical protein complement(127630..127935) Bifidobacterium animalis subsp. lactis Bl-04 8008098 YP_002967568.1 CDS Balac_0112 NC_012814.1 127988 128467 R COG0350 Methylated DNA-protein cysteinemethyltransferase; methylated-DNA--protein- cysteinemethyltransferase complement(127988..128467) Bifidobacterium animalis subsp. lactis Bl-04 8008099 YP_002967569.1 CDS Balac_0113 NC_012814.1 128864 130081 D oxidoreductase 128864..130081 Bifidobacterium animalis subsp. lactis Bl-04 8008100 YP_002967570.1 CDS Balac_0114 NC_012814.1 130041 130808 R COG0599 Uncharacterized homolog ofgamma-carboxymuconolactone decarboxylase subunit; putative carboxymuconolactone decarboxylase complement(130041..130808) Bifidobacterium animalis subsp. lactis Bl-04 8008101 YP_002967571.1 CDS Balac_0115 NC_012814.1 130832 131275 R COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain; carboxymuconolactone decarboxylase complement(130832..131275) Bifidobacterium animalis subsp. lactis Bl-04 8008102 YP_002967572.1 CDS Balac_0116 NC_012814.1 131417 132403 R COG1073 Hydrolases of the alpha/beta superfamily; hypothetical protein complement(131417..132403) Bifidobacterium animalis subsp. lactis Bl-04 8008103 YP_002967573.1 CDS Balac_0117 NC_012814.1 132538 133407 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 132538..133407 Bifidobacterium animalis subsp. lactis Bl-04 8008104 YP_002967574.1 CDS Balac_0118 NC_012814.1 133448 134473 R COG0667 Predicted oxidoreductases (related toaryl-alcohol dehydrogenases); Tas protein complement(133448..134473) Bifidobacterium animalis subsp. lactis Bl-04 8008105 YP_002967575.1 CDS Balac_0119 NC_012814.1 134530 134712 R hypothetical protein complement(134530..134712) Bifidobacterium animalis subsp. lactis Bl-04 8008106 YP_002967576.1 CDS Balac_0120 NC_012814.1 134766 136061 R COG4097 Predicted ferric reductase; ferric reductase complement(134766..136061) Bifidobacterium animalis subsp. lactis Bl-04 8008107 YP_002967577.1 CDS Balac_0121 NC_012814.1 136098 136754 R COG0716 Flavodoxins; hypothetical protein complement(136098..136754) Bifidobacterium animalis subsp. lactis Bl-04 8008108 YP_002967578.1 CDS Balac_0122 NC_012814.1 136744 137493 D COG0789 Predicted transcriptional regulators; transcriptional regulator 136744..137493 Bifidobacterium animalis subsp. lactis Bl-04 8008109 YP_002967579.1 CDS Balac_0123 NC_012814.1 137546 138019 R COG0716 Flavodoxins; flavodoxin complement(137546..138019) Bifidobacterium animalis subsp. lactis Bl-04 8008110 YP_002967580.1 CDS Balac_0124 NC_012814.1 138087 138875 R COG0702 Predicted nucleoside-diphosphate-sugare pimerases; NAD-dependent epimerase/dehydratase complement(138087..138875) Bifidobacterium animalis subsp. lactis Bl-04 8008111 YP_002967581.1 CDS Balac_0125 NC_012814.1 138893 139951 R COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases; alcohol dehydrogenase complement(138893..139951) Bifidobacterium animalis subsp. lactis Bl-04 8008112 YP_002967582.1 CDS Balac_0126 NC_012814.1 140142 141041 D COG0583 Transcriptional regulator; LysR family transcriptional regulator 140142..141041 Bifidobacterium animalis subsp. lactis Bl-04 8008113 YP_002967583.1 CDS Balac_0127 NC_012814.1 141044 142354 R COG0726 Predicted xylanase/chitin deacetylase; polysaccharide deacetylase complement(141044..142354) Bifidobacterium animalis subsp. lactis Bl-04 8008114 YP_002967584.1 CDS Balac_0128 NC_012814.1 142498 143562 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 142498..143562 Bifidobacterium animalis subsp. lactis Bl-04 8008115 YP_002967585.1 CDS Balac_0129 NC_012814.1 144115 145401 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 144115..145401 Bifidobacterium animalis subsp. lactis Bl-04 8008116 YP_002967586.1 CDS Balac_0130 NC_012814.1 145542 146474 D COG0239 Integral membrane protein possibly involved in chromosome condensation; hypothetical protein 145542..146474 Bifidobacterium animalis subsp. lactis Bl-04 8008117 YP_002967587.1 CDS Balac_0131 NC_012814.1 146474 146848 D COG0239 Integral membrane protein possibly involved in chromosome condensation; hypothetical protein 146474..146848 Bifidobacterium animalis subsp. lactis Bl-04 8008118 YP_002967588.1 CDS Balac_0132 NC_012814.1 147437 148873 D COG0559 Branched-chain amino acid ABC-typetransport system, permease components; branched-chain amino acid ABC-type transport system permease 147437..148873 Bifidobacterium animalis subsp. lactis Bl-04 8008119 YP_002967589.1 CDS Balac_0133 NC_012814.1 148877 149860 D COG4177 ABC-type branched-chain amino acid transport system, permease component; branched-chain amino acid transport system permease 148877..149860 Bifidobacterium animalis subsp. lactis Bl-04 8008120 YP_002967590.1 CDS Balac_0134 NC_012814.1 149853 150860 D COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; branched-chain amino acid transport systemATP-binding protein 149853..150860 Bifidobacterium animalis subsp. lactis Bl-04 8008121 YP_002967591.1 CDS Balac_0135 NC_012814.1 150853 151668 D COG0410 ABC-type branched-chain amino acid transport systems, ATPase component; branched-chain amino acid ABC transporter ATPase 150853..151668 Bifidobacterium animalis subsp. lactis Bl-04 8008122 YP_002967592.1 CDS Balac_0136 NC_012814.1 151811 153076 D COG0683 ABC-type branched-chain amino acidtransport systems, periplasmic component; branched-chain amino acid transport system substrate-binding protein 151811..153076 Bifidobacterium animalis subsp. lactis Bl-04 8008123 YP_002967593.1 CDS Balac_0137 NC_012814.1 153154 154182 R COG1609 Transcriptional regulators; LacI-type transcriptional regulator complement(153154..154182) Bifidobacterium animalis subsp. lactis Bl-04 8008124 YP_002967594.1 CDS Balac_0138 NC_012814.1 154489 156009 D COG0366 Glycosidases; sucrose phosphorylase 154489..156009 Bifidobacterium animalis subsp. lactis Bl-04 8008125 YP_002967595.1 CDS Balac_0139 NC_012814.1 156066 157679 D COG0477 Permeases of the major facilitator superfamily; transport membrane protein 156066..157679 Bifidobacterium animalis subsp. lactis Bl-04 8008126 YP_002967596.1 CDS Balac_0140 NC_012814.1 157945 158664 D COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; branched-chain amino acid transport system substrate-binding protein 157945..158664 Bifidobacterium animalis subsp. lactis Bl-04 8008127 YP_002967597.1 CDS Balac_0141 NC_012814.1 158700 159998 D COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit; biotin carboxylase/biotin carboxyl carrier protein 158700..159998 Bifidobacterium animalis subsp. lactis Bl-04 8008128 YP_002967598.1 CDS Balac_0142 NC_012814.1 160347 161306 D hypothetical protein 160347..161306 Bifidobacterium animalis subsp. lactis Bl-04 8008129 YP_002967599.1 CDS Balac_0143 NC_012814.1 161412 163001 D COG2211 Na+/melibiose symporter and related transporters; Na+/sugar symporter 161412..163001 Bifidobacterium animalis subsp. lactis Bl-04 8008130 YP_002967600.1 CDS Balac_0144 NC_012814.1 163021 163527 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; GCN5-like N-acetyltransferase complement(163021..163527) Bifidobacterium animalis subsp. lactis Bl-04 8008131 YP_002967601.1 CDS Balac_0145 NC_012814.1 163524 163808 R COG4453 Uncharacterized protein conserved in bacteria; hypothetical protein complement(163524..163808) Bifidobacterium animalis subsp. lactis Bl-04 8008132 YP_002967602.1 CDS Balac_0146 NC_012814.1 163938 164066 D hypothetical protein 163938..164066 Bifidobacterium animalis subsp. lactis Bl-04 8008133 YP_002967603.1 CDS Balac_0147 NC_012814.1 164817 166208 D COG0477 Permeases of the major facilitator superfamily; transmembrane transport protein 164817..166208 Bifidobacterium animalis subsp. lactis Bl-04 8008134 YP_002967604.1 CDS Balac_0148 NC_012814.1 166619 167671 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 166619..167671 Bifidobacterium animalis subsp. lactis Bl-04 8008135 YP_002967605.1 CDS Balac_0149 NC_012814.1 168306 170003 R sialic acid-specific 9-O-acetylesterase complement(168306..170003) Bifidobacterium animalis subsp. lactis Bl-04 8008136 YP_002967606.1 CDS Balac_0150 NC_012814.1 170427 171524 R RnfABCDGE type electron transport complex subunit D complement(170427..171524) Bifidobacterium animalis subsp. lactis Bl-04 8008137 YP_002967607.1 CDS Balac_0151 NC_012814.1 172048 173430 D COG2723Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase; putative beta-glucosidase 172048..173430 Bifidobacterium animalis subsp. lactis Bl-04 8008138 YP_002967608.1 CDS Balac_0152 NC_012814.1 173860 174597 D beta-mannosidase 173860..174597 Bifidobacterium animalis subsp. lactis Bl-04 8008139 YP_002967609.1 CDS Balac_0153 NC_012814.1 174854 175882 D COG1609 Transcriptional regulators; LacI family transcription regulator 174854..175882 Bifidobacterium animalis subsp. lactis Bl-04 8008140 YP_002967610.1 CDS Balac_0154 NC_012814.1 176166 176801 R hypothetical protein complement(176166..176801) Bifidobacterium animalis subsp. lactis Bl-04 8008141 YP_002967611.1 CDS Balac_0155 NC_012814.1 176885 177616 R hypothetical protein complement(176885..177616) Bifidobacterium animalis subsp. lactis Bl-04 8008142 YP_002967612.1 CDS Balac_0156 NC_012814.1 177915 178076 D hypothetical protein 177915..178076 Bifidobacterium animalis subsp. lactis Bl-04 8008143 YP_002967613.1 CDS Balac_0157 NC_012814.1 178390 179655 D COG2942 N-acyl-D-glucosamine 2-epimerase; hypothetical protein 178390..179655 Bifidobacterium animalis subsp. lactis Bl-04 8008144 YP_002967614.1 CDS Balac_0158 NC_012814.1 180183 180923 D COG4619 ABC-type uncharacterized transport system, ATPase component; ABC transporter ATP-binding protein 180183..180923 Bifidobacterium animalis subsp. lactis Bl-04 8008145 YP_002967615.1 CDS Balac_0159 NC_012814.1 180925 181791 D COG0390 ABC-type uncharacterized transport system, permease component; hypothetical protein 180925..181791 Bifidobacterium animalis subsp. lactis Bl-04 8008146 YP_002967616.1 CDS Balac_0160 NC_012814.1 181944 183440 D COG1113 Gamma-aminobutyrate permease and related permeases; aromatic amino acid transport protein AroP 181944..183440 Bifidobacterium animalis subsp. lactis Bl-04 8008147 YP_002967617.1 CDS Balac_0161 NC_012814.1 184022 184723 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter ATP-binding protein 184022..184723 Bifidobacterium animalis subsp. lactis Bl-04 8008148 YP_002967618.1 CDS Balac_0162 NC_012814.1 184734 187688 D COG0577 ABC-type antimicrobial peptide transport system, permease component; hypothetical protein 184734..187688 Bifidobacterium animalis subsp. lactis Bl-04 8008149 YP_002967619.1 CDS Balac_0163 NC_012814.1 187743 189287 D COG1113 Gamma-aminobutyrate permease and related permeases; amino acid permease 187743..189287 Bifidobacterium animalis subsp. lactis Bl-04 8008150 YP_002967620.1 CDS Balac_0164 NC_012814.1 189299 189544 R COG0577 ABC-type antimicrobial peptide transport system, permease component; putative ABC transporter integral membrane protein complement(189299..189544) Bifidobacterium animalis subsp. lactis Bl-04 8008151 YP_002967621.1 CDS Balac_0165 NC_012814.1 189541 189978 R putative ABC transporter integral membrane protein complement(189541..189978) Bifidobacterium animalis subsp. lactis Bl-04 8008152 YP_002967622.1 CDS Balac_0166 NC_012814.1 189896 191617 R COG0577 ABC-type antimicrobial peptide transport system, permease component; putative ABC transporter integral membrane protein complement(189896..191617) Bifidobacterium animalis subsp. lactis Bl-04 8008153 YP_002967623.1 CDS Balac_0167 NC_012814.1 191614 192036 R COG1136 ABC-type antimicrobial peptide transport system, ATPase component; putative ABC transporter ATP-binding protein complement(191614..192036) Bifidobacterium animalis subsp. lactis Bl-04 8008154 YP_002967624.1 CDS Balac_0168 NC_012814.1 192731 193324 D COG1846 Transcriptional regulators; MarR family transcriptional regulator 192731..193324 Bifidobacterium animalis subsp. lactis Bl-04 8008155 YP_002967625.1 CDS Balac_0169 NC_012814.1 193396 195315 D COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter ATPase and permease 193396..195315 Bifidobacterium animalis subsp. lactis Bl-04 8008156 YP_002967626.1 CDS Balac_0170 NC_012814.1 195387 197222 D COG1132 ABC-type multidrug transport system, ATPase and permease components; ABC transporter permease 195387..197222 Bifidobacterium animalis subsp. lactis Bl-04 8008157 YP_002967627.1 CDS Balac_0171 NC_012814.1 197236 198762 R COG0726 Predicted xylanase/chitin deacetylase; putative secreted polysaccharide deacetylase complement(197236..198762) Bifidobacterium animalis subsp. lactis Bl-04 8008158 YP_002967628.1 CDS Balac_0172 NC_012814.1 199137 199826 R COG0671 Membrane-associated phospholipidphosphatase; phosphoesterase PA-phosphatase-like protein complement(199137..199826) Bifidobacterium animalis subsp. lactis Bl-04 8008159 YP_002967629.1 CDS Balac_0173 NC_012814.1 199902 200537 D COG0110 Acetyltransferase (isoleucine patch superfamily); galactoside O-acetyltransferase 199902..200537 Bifidobacterium animalis subsp. lactis Bl-04 8008160 YP_002967630.1 CDS Balac_0174 NC_012814.1 200628 201047 D hypothetical protein 200628..201047 Bifidobacterium animalis subsp. lactis Bl-04 8008161 YP_002967631.1 CDS Balac_0175 NC_012814.1 202038 203297 R COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component; branched-chain amino acid transport system substrate-binding protein complement(202038..203297) Bifidobacterium animalis subsp. lactis Bl-04 8008162 YP_002967632.1 CDS Balac_0176 NC_012814.1 203888 204541 R COG1309 Transcriptional regulator; TetR family transcriptional regulator complement(203888..204541) Bifidobacterium animalis subsp. lactis Bl-04 8008163 YP_002967633.1 CDS Balac_0177 NC_012814.1 204551 206749 R COG1511 Predicted membrane protein; putative phage infection protein complement(204551..206749) Bifidobacterium animalis subsp. lactis Bl-04 8008164 YP_002967634.1 CDS Balac_0178 NC_012814.1 206746 209514 R COG1511 Predicted membrane protein; putative phage infection protein complement(206746..209514) Bifidobacterium animalis subsp. lactis Bl-04 8008165 YP_002967635.1 CDS Balac_0179 NC_012814.1 209808 210449 D COG0477 Permeases of the major facilitator superfamily; hypothetical protein 209808..210449 Bifidobacterium animalis subsp. lactis Bl-04 8008166 YP_002967636.1 CDS Balac_0180 NC_012814.1 210446 211186 D COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; cobalt ABC transporter permease 210446..211186 Bifidobacterium animalis subsp. lactis Bl-04 8008167 YP_002967637.1 CDS Balac_0181 NC_012814.1 211239 212726 D COG1122 ABC-type cobalt transport system, ATPase component; ABC transporter ATP-binding protein 211239..212726 Bifidobacterium animalis subsp. lactis Bl-04 8008168 YP_002967638.1 CDS Balac_0182 NC_012814.1 212776 214359 R COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; hypothetical protein complement(212776..214359) Bifidobacterium animalis subsp. lactis Bl-04 8008169 YP_002967639.1 CDS Balac_0183 NC_012814.1 214555 215436 R COG4667 Predicted esterase of the alpha-beta hydrolase superfamily; hypothetical protein complement(214555..215436) Bifidobacterium animalis subsp. lactis Bl-04 8008170 YP_002967640.1 CDS Balac_0184 NC_012814.1 215572 216339 D COG1309 Transcriptional regulator; hypothetical protein 215572..216339 Bifidobacterium animalis subsp. lactis Bl-04 8008171 YP_002967641.1 CDS Balac_0185 NC_012814.1 216519 217229 R hypothetical protein complement(216519..217229) Bifidobacterium animalis subsp. lactis Bl-04 8008172 YP_002967642.1 CDS Balac_0187 NC_012814.1 217560 219128 D COG4690 Dipeptidase; dipeptidase 217560..219128 Bifidobacterium animalis subsp. lactis Bl-04 8009562 YP_002967643.1 CDS Balac_0188 NC_012814.1 219314 220027 R COG1309 Transcriptional regulator; TetR family transcriptional regulator complement(219314..220027) Bifidobacterium animalis subsp. lactis Bl-04 8008174 YP_002967644.1 CDS Balac_0189 NC_012814.1 220154 221554 D COG0552 Signal recognition particle GTPase; FtsY signal recognition particle 220154..221554 Bifidobacterium animalis subsp. lactis Bl-04 8008175 YP_002967645.1 CDS Balac_0190 NC_012814.1 221814 223109 D COG0004 Ammonia permease; ammonium transporter 221814..223109 Bifidobacterium animalis subsp. lactis Bl-04 8008176 YP_002967646.1 CDS Balac_0191 NC_012814.1 223111 223449 D COG0347 Nitrogen regulatory protein PII; nitrogen regulatory protein N-II 223111..223449 Bifidobacterium animalis subsp. lactis Bl-04 8008177 YP_002967647.1 CDS Balac_0192 NC_012814.1 223760 225586 D COG2844 UTP:GlnB (protein PII uridylyl transferase); protein-PII uridylyltransferase 223760..225586 Bifidobacterium animalis subsp. lactis Bl-04 8008178 YP_002967648.1 CDS Balac_0193 NC_012814.1 225947 226219 D COG1476 Predicted transcriptional regulators; putative transcriptional regulator 225947..226219 Bifidobacterium animalis subsp. lactis Bl-04 8008179 YP_002967649.1 CDS Balac_0194 NC_012814.1 226278 227657 D COG0305 Replicative DNA helicase; replicative DNA helicase 226278..227657 Bifidobacterium animalis subsp. lactis Bl-04 8008180 YP_002967650.1 CDS Balac_0195 NC_012814.1 227754 229262 D COG0769 UDP-N-acetylmuramyl tripeptide synthase; UDP-N-acetylmuramyl tripeptide synthase 227754..229262 Bifidobacterium animalis subsp. lactis Bl-04 8008181 YP_002967651.1 CDS Balac_0196 NC_012814.1 229331 230080 D COG3442 Predicted glutamine amidotransferase; cobyric acid synthase CobQ 229331..230080 Bifidobacterium animalis subsp. lactis Bl-04 8008182 YP_002967652.1 CDS Balac_0197 NC_012814.1 230188 230535 D COG3937 Uncharacterized conserved protein; hypothetical protein 230188..230535 Bifidobacterium animalis subsp. lactis Bl-04 8008183 YP_002967653.1 CDS Balac_0198 NC_012814.1 230644 232794 D COG0661 Predicted unusual protein kinase; Unusual protein kinase 230644..232794 Bifidobacterium animalis subsp. lactis Bl-04 8008184 YP_002967654.1 CDS Balac_0199 NC_012814.1 232905 233942 D COG0584 Glycerophosphoryl diesterphosphodiesterase; phosphodiesterase 232905..233942 Bifidobacterium animalis subsp. lactis Bl-04 8008185 YP_002967655.1 CDS upp NC_012814.1 234038 234679 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(234038..234679) Bifidobacterium animalis subsp. lactis Bl-04 8008186 YP_002967656.1 CDS Balac_0201 NC_012814.1 235105 235830 R hypothetical protein complement(235105..235830) Bifidobacterium animalis subsp. lactis Bl-04 8008187 YP_002967657.1 CDS Balac_0202 NC_012814.1 235835 236878 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; MutT1 protein complement(235835..236878) Bifidobacterium animalis subsp. lactis Bl-04 8008188 YP_002967658.1 CDS Balac_0203 NC_012814.1 237015 239249 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(237015..239249) Bifidobacterium animalis subsp. lactis Bl-04 8008189 YP_002967659.1 CDS Balac_0204 NC_012814.1 240137 241150 D hypothetical protein 240137..241150 Bifidobacterium animalis subsp. lactis Bl-04 8008190 YP_002967660.1 CDS Balac_0205 NC_012814.1 241147 242355 D COG4962 Flp pilus assembly protein, ATPase CpaF; Flp pilus assembly ABC transporter ATPase 241147..242355 Bifidobacterium animalis subsp. lactis Bl-04 8008191 YP_002967661.1 CDS Balac_0206 NC_012814.1 242361 243095 D COG4965 Flp pilus assembly protein TadB; Flp pilus assembly protein 242361..243095 Bifidobacterium animalis subsp. lactis Bl-04 8008192 YP_002967662.1 CDS Balac_0207 NC_012814.1 243193 243729 D Flp pilus assembly protein 243193..243729 Bifidobacterium animalis subsp. lactis Bl-04 8008193 YP_002967663.1 CDS Balac_0208 NC_012814.1 243906 244181 D hypothetical protein 243906..244181 Bifidobacterium animalis subsp. lactis Bl-04 8008194 YP_002967664.1 CDS Balac_0209 NC_012814.1 244186 244569 D hypothetical protein 244186..244569 Bifidobacterium animalis subsp. lactis Bl-04 8008195 YP_002967665.1 CDS Balac_0210 NC_012814.1 244616 245056 D hypothetical protein 244616..245056 Bifidobacterium animalis subsp. lactis Bl-04 8008196 YP_002967666.1 CDS Balac_0211 NC_012814.1 245205 247757 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 245205..247757 Bifidobacterium animalis subsp. lactis Bl-04 8008197 YP_002967667.1 CDS recR NC_012814.1 247788 248390 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 247788..248390 Bifidobacterium animalis subsp. lactis Bl-04 8008198 YP_002967668.1 CDS Balac_0213 NC_012814.1 248511 249275 D COG0527 Aspartokinases; aspartokinase 248511..249275 Bifidobacterium animalis subsp. lactis Bl-04 8008199 YP_002967669.1 CDS Balac_0214 NC_012814.1 249348 249914 D COG0527 Aspartokinases; aspartokinase 249348..249914 Bifidobacterium animalis subsp. lactis Bl-04 8008200 YP_002967670.1 CDS Balac_0215 NC_012814.1 249971 251041 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 249971..251041 Bifidobacterium animalis subsp. lactis Bl-04 8008201 YP_002967671.1 CDS Balac_0216 NC_012814.1 251226 251849 D hypothetical protein 251226..251849 Bifidobacterium animalis subsp. lactis Bl-04 8008202 YP_002967672.1 CDS Balac_0217 NC_012814.1 252414 254327 D COG0119 Isopropylmalate/homocitrate/citramalatesynthases; 2-isopropylmalate synthase 252414..254327 Bifidobacterium animalis subsp. lactis Bl-04 8008203 YP_002967673.1 CDS Balac_0218 NC_012814.1 254475 256883 R COG0744 Membrane carboxypeptidase (penicillin-binding protein); penicillin-binding protein complement(254475..256883) Bifidobacterium animalis subsp. lactis Bl-04 8008204 YP_002967674.1 CDS Balac_0219 NC_012814.1 257185 258327 D COG1260 Myo-inositol-1-phosphate synthase; myo-inositol-1-phosphate synthase 257185..258327 Bifidobacterium animalis subsp. lactis Bl-04 8008205 YP_002967675.1 CDS Balac_0220 NC_012814.1 258722 259942 D pre-pilin peptidase 258722..259942 Bifidobacterium animalis subsp. lactis Bl-04 8008206 YP_002967676.1 CDS Balac_0221 NC_012814.1 260287 263247 D COG0550 Topoisomerase IA; DNA topoisomerase I 260287..263247 Bifidobacterium animalis subsp. lactis Bl-04 8008207 YP_002967677.1 CDS Balac_0222 NC_012814.1 263931 264551 D COG0125 Thymidylate kinase; Thymidylate kinase 263931..264551 Bifidobacterium animalis subsp. lactis Bl-04 8008208 YP_002967678.1 CDS Balac_0223 NC_012814.1 264557 265849 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 264557..265849 Bifidobacterium animalis subsp. lactis Bl-04 8008209 YP_002967679.1 CDS Balac_0224 NC_012814.1 265872 266576 D COG1881 Phospholipid-binding protein; hypothetical protein 265872..266576 Bifidobacterium animalis subsp. lactis Bl-04 8008210 YP_002967680.1 CDS Balac_0225 NC_012814.1 267249 268862 D COG4690 Dipeptidase; Dipeptidase 267249..268862 Bifidobacterium animalis subsp. lactis Bl-04 8008211 YP_002967681.1 CDS Balac_0226 NC_012814.1 269382 271007 D COG4690 Dipeptidase; dipeptidase 269382..271007 Bifidobacterium animalis subsp. lactis Bl-04 8008212 YP_002967682.1 CDS Balac_0227 NC_012814.1 271358 272527 D COG1373 Predicted ATPase (AAA+ superfamily); hypothetical protein 271358..272527 Bifidobacterium animalis subsp. lactis Bl-04 8008213 YP_002967683.1 CDS Balac_0228 NC_012814.1 272634 274151 D COG2759 Formyltetrahydrofolate synthetase; formate-tetrahydrofolate ligase 272634..274151 Bifidobacterium animalis subsp. lactis Bl-04 8008214 YP_002967684.1 CDS Balac_0229 NC_012814.1 274266 274613 R COG1049 Aconitase B; hypothetical protein complement(274266..274613) Bifidobacterium animalis subsp. lactis Bl-04 8008215 YP_002967685.1 CDS Balac_0230 NC_012814.1 275238 276224 D hypothetical protein 275238..276224 Bifidobacterium animalis subsp. lactis Bl-04 8008216 YP_002967686.1 CDS Balac_0231 NC_012814.1 276242 276799 R COG2246 Predicted membrane protein; hypothetical protein complement(276242..276799) Bifidobacterium animalis subsp. lactis Bl-04 8008217 YP_002967687.1 CDS Balac_0232 NC_012814.1 277025 277969 R hypothetical protein complement(277025..277969) Bifidobacterium animalis subsp. lactis Bl-04 8008218 YP_002967688.1 CDS Balac_0233 NC_012814.1 278502 279161 R COG0406 Fructose-2,6-bisphosphatase; hypothetical protein complement(278502..279161) Bifidobacterium animalis subsp. lactis Bl-04 8008219 YP_002967689.1 CDS Balac_0234 NC_012814.1 279568 280986 D COG0477 Permeases of the major facilitator superfamily; hypothetical protein 279568..280986 Bifidobacterium animalis subsp. lactis Bl-04 8008220 YP_002967690.1 CDS Balac_0235 NC_012814.1 281393 282526 R COG3464 Transposase and inactivated derivatives; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(281393..282526) Bifidobacterium animalis subsp. lactis Bl-04 8008221 YP_002967691.1 CDS gltX NC_012814.1 282863 284380 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 282863..284380 Bifidobacterium animalis subsp. lactis Bl-04 8008222 YP_002967692.1 CDS Balac_0239 NC_012814.1 285047 286303 D COG1409 Predicted phosphohydrolases; hypothetical protein 285047..286303 Bifidobacterium animalis subsp. lactis Bl-04 8009564 YP_002967693.1 CDS Balac_0240 NC_012814.1 287069 287887 R COG1414 Transcriptional regulator; IclR family transcriptional regulator complement(287069..287887) Bifidobacterium animalis subsp. lactis Bl-04 8008224 YP_002967694.1 CDS Balac_0241 NC_012814.1 288189 289586 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 288189..289586 Bifidobacterium animalis subsp. lactis Bl-04 8008225 YP_002967695.1 CDS leuD NC_012814.1 289624 290304 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 289624..290304 Bifidobacterium animalis subsp. lactis Bl-04 8008226 YP_002967696.1 CDS Balac_0243 NC_012814.1 290559 290837 D COG1522 Transcriptional regulators; AsnC family transcriptional regulator 290559..290837 Bifidobacterium animalis subsp. lactis Bl-04 8008227 YP_002967697.1 CDS Balac_0244 NC_012814.1 291749 293095 R COG0446 Uncharacterized NAD (FAD-dependent dehydrogenases); NADH oxidase complement(291749..293095) Bifidobacterium animalis subsp. lactis Bl-04 8008228 YP_002967698.1 CDS Balac_0245 NC_012814.1 293349 294677 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 293349..294677 Bifidobacterium animalis subsp. lactis Bl-04 8008229 YP_002967699.1 CDS Balac_0246 NC_012814.1 295175 296164 D COG0204 1-acyl-sn-glycerol-3-phosphateacyltransferase; hypothetical protein 295175..296164 Bifidobacterium animalis subsp. lactis Bl-04 8008230 YP_002967700.1 CDS gpsA NC_012814.1 296520 297518 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 296520..297518 Bifidobacterium animalis subsp. lactis Bl-04 8008231 YP_002967701.1 CDS ddl NC_012814.1 297880 299016 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 297880..299016 Bifidobacterium animalis subsp. lactis Bl-04 8008232 YP_002967702.1 CDS Balac_0249 NC_012814.1 299282 300418 D hypothetical protein 299282..300418 Bifidobacterium animalis subsp. lactis Bl-04 8008233 YP_002967703.1 CDS Balac_0250 NC_012814.1 300654 301769 D COG1266 Predicted metal-dependent membrane protease; hypothetical protein 300654..301769 Bifidobacterium animalis subsp. lactis Bl-04 8008234 YP_002967704.1 CDS Balac_0251 NC_012814.1 301753 302568 R COG0668 Small-conductance mechanosensitive channel; hypothetical protein complement(301753..302568) Bifidobacterium animalis subsp. lactis Bl-04 8008235 YP_002967705.1 CDS Balac_0252 NC_012814.1 302625 303194 R COG1309 Transcriptional regulator; AcrR family transcriptional regulator complement(302625..303194) Bifidobacterium animalis subsp. lactis Bl-04 8008236 YP_002967706.1 CDS Balac_0253 NC_012814.1 303416 304612 R hypothetical protein complement(303416..304612) Bifidobacterium animalis subsp. lactis Bl-04 8008237 YP_002967707.1 CDS Balac_0254 NC_012814.1 304727 305593 D COG4905 Predicted membrane protein; hypothetical protein 304727..305593 Bifidobacterium animalis subsp. lactis Bl-04 8008238 YP_002967708.1 CDS Balac_0255 NC_012814.1 305657 306853 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 305657..306853 Bifidobacterium animalis subsp. lactis Bl-04 8008239 YP_002967709.1 CDS Balac_0256 NC_012814.1 307108 309966 R hypothetical protein complement(307108..309966) Bifidobacterium animalis subsp. lactis Bl-04 8008240 YP_002967710.1 CDS Balac_0257 NC_012814.1 310344 311996 D COG0457 FOG: TPR repeat; hypothetical protein 310344..311996 Bifidobacterium animalis subsp. lactis Bl-04 8008241 YP_002967711.1 CDS Balac_0258 NC_012814.1 312003 313058 R COG0524 Sugar kinases, ribokinase family; Ribokinase family sugar kinase complement(312003..313058) Bifidobacterium animalis subsp. lactis Bl-04 8008242 YP_002967712.1 CDS rpmB NC_012814.1 313340 313519 D required for 70S ribosome assembly; 50S ribosomal protein L28 313340..313519 Bifidobacterium animalis subsp. lactis Bl-04 8008243 YP_002967713.1 CDS Balac_0260 NC_012814.1 313760 316132 D COG1200 RecG-like helicase; RecG-like helicase 313760..316132 Bifidobacterium animalis subsp. lactis Bl-04 8008244 YP_002967714.1 CDS fbp NC_012814.1 316614 324704 D hypothetical protein 316614..324704 Bifidobacterium animalis subsp. lactis Bl-04 8008245 YP_002967715.1 CDS Balac_0262 NC_012814.1 324931 325056 D hypothetical protein 324931..325056 Bifidobacterium animalis subsp. lactis Bl-04 8008246 YP_002967716.1 CDS Balac_0263 NC_012814.1 325353 325928 D COG0742 N6-adenine-specific methylase; hypothetical protein 325353..325928 Bifidobacterium animalis subsp. lactis Bl-04 8008247 YP_002967717.1 CDS trmD NC_012814.1 325955 326782 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(325955..326782) Bifidobacterium animalis subsp. lactis Bl-04 8008248 YP_002967718.1 CDS Balac_0265 NC_012814.1 326938 327597 R COG0806 RimM protein, required for 16S rRNA processing; 16S rRNA-processing protein RimM complement(326938..327597) Bifidobacterium animalis subsp. lactis Bl-04 8008249 YP_002967719.1 CDS Balac_0266 NC_012814.1 327594 327827 R COG1837 Predicted RNA-binding protein (contains KH domain); hypothetical protein complement(327594..327827) Bifidobacterium animalis subsp. lactis Bl-04 8008250 YP_002967720.1 CDS rpsP NC_012814.1 327832 328302 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(327832..328302) Bifidobacterium animalis subsp. lactis Bl-04 8008251 YP_002967721.1 CDS Balac_0268 NC_012814.1 328532 331990 D COG3250 Beta-galactosidase/beta-glucuronidase; beta-galactosidase 328532..331990 Bifidobacterium animalis subsp. lactis Bl-04 8008252 YP_002967722.1 CDS Balac_0269 NC_012814.1 332270 333439 R COG3568 Metal-dependent hydrolase; hypothetical protein complement(332270..333439) Bifidobacterium animalis subsp. lactis Bl-04 8008253 YP_002967723.1 CDS Balac_0270 NC_012814.1 333902 334900 R COG0053 Predicted Co/Zn/Cd cation transporters; putative Co/Zn/Cd cation transporter complement(333902..334900) Bifidobacterium animalis subsp. lactis Bl-04 8008254 YP_002967724.1 CDS Balac_0271 NC_012814.1 334935 336578 D COG0541 Signal recognition particle GTPase; signal recognition particle protein 334935..336578 Bifidobacterium animalis subsp. lactis Bl-04 8008255 YP_002967725.1 CDS cysS NC_012814.1 337722 339359 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(337722..339359) Bifidobacterium animalis subsp. lactis Bl-04 8008256 YP_002967726.1 CDS Balac_0273 NC_012814.1 339408 341609 R COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATPase complement(339408..341609) Bifidobacterium animalis subsp. lactis Bl-04 8008257 YP_002967727.1 CDS Balac_0274 NC_012814.1 341775 342512 R COG0518 GMP synthase - Glutamine amidotransferase domain; amidotransferase complement(341775..342512) Bifidobacterium animalis subsp. lactis Bl-04 8008258 YP_002967728.1 CDS ilvH NC_012814.1 342689 343243 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(342689..343243) Bifidobacterium animalis subsp. lactis Bl-04 8008259 YP_002967729.1 CDS Balac_0276 NC_012814.1 343259 345187 R acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 1 catalytic subunit complement(343259..345187) Bifidobacterium animalis subsp. lactis Bl-04 8008260 YP_002967730.1 CDS rnc NC_012814.1 345563 346339 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(345563..346339) Bifidobacterium animalis subsp. lactis Bl-04 8008261 YP_002967731.1 CDS rpmF NC_012814.1 346664 346858 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(346664..346858) Bifidobacterium animalis subsp. lactis Bl-04 8008262 YP_002967732.1 CDS Balac_0279 NC_012814.1 346937 347533 R COG1399 Predicted metal-binding, possibly nucleic acid-binding protein; putative metal-binding/nucleic acid-binding protein complement(346937..347533) Bifidobacterium animalis subsp. lactis Bl-04 8008263 YP_002967733.1 CDS Balac_0280 NC_012814.1 347618 348319 R COG3599 Cell division initiation protein; hypothetical protein complement(347618..348319) Bifidobacterium animalis subsp. lactis Bl-04 8008264 YP_002967734.1 CDS coaD NC_012814.1 348370 348849 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(348370..348849) Bifidobacterium animalis subsp. lactis Bl-04 8008265 YP_002967735.1 CDS Balac_0282 NC_012814.1 349025 349318 D hypothetical protein 349025..349318 Bifidobacterium animalis subsp. lactis Bl-04 8008266 YP_002967736.1 CDS Balac_0283 NC_012814.1 349453 350460 R COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); reductase complement(349453..350460) Bifidobacterium animalis subsp. lactis Bl-04 8008267 YP_002967737.1 CDS Balac_0284 NC_012814.1 350537 351997 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(350537..351997) Bifidobacterium animalis subsp. lactis Bl-04 8008268 YP_002967738.1 CDS Balac_0285 NC_012814.1 352165 352785 D hypothetical protein 352165..352785 Bifidobacterium animalis subsp. lactis Bl-04 8008269 YP_002967739.1 CDS rph NC_012814.1 353043 353735 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 353043..353735 Bifidobacterium animalis subsp. lactis Bl-04 8008270 YP_002967740.1 CDS Balac_0287 NC_012814.1 353764 354483 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 353764..354483 Bifidobacterium animalis subsp. lactis Bl-04 8008271 YP_002967741.1 CDS Balac_0288 NC_012814.1 354549 355808 D COG2348 Uncharacterized protein involved in methicillin resistance; FemAB-like protein 354549..355808 Bifidobacterium animalis subsp. lactis Bl-04 8008272 YP_002967742.1 CDS Balac_0289 NC_012814.1 355838 356845 R COG0679 Predicted permeases; hypothetical protein complement(355838..356845) Bifidobacterium animalis subsp. lactis Bl-04 8008273 YP_002967743.1 CDS Balac_0292 NC_012814.1 357297 358508 D COG0836 Mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanylyltransferase 357297..358508 Bifidobacterium animalis subsp. lactis Bl-04 8009566 YP_002967744.1 CDS pgi NC_012814.1 358798 360495 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 358798..360495 Bifidobacterium animalis subsp. lactis Bl-04 8008275 YP_002967745.1 CDS rplS NC_012814.1 360819 361184 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 360819..361184 Bifidobacterium animalis subsp. lactis Bl-04 8008276 YP_002967746.1 CDS Balac_0295 NC_012814.1 361398 362123 D COG0681 Signal peptidase I; signal peptidase I 361398..362123 Bifidobacterium animalis subsp. lactis Bl-04 8008277 YP_002967747.1 CDS rnhB NC_012814.1 362168 362944 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 362168..362944 Bifidobacterium animalis subsp. lactis Bl-04 8008278 YP_002967748.1 CDS Balac_0297 NC_012814.1 363051 364037 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; SalX-type antimicrobial peptide ABC transporter ATPase 363051..364037 Bifidobacterium animalis subsp. lactis Bl-04 8008279 YP_002967749.1 CDS Balac_0298 NC_012814.1 364034 365458 D COG0577 ABC-type antimicrobial peptide transport system, permease component; ABC transporter permease 364034..365458 Bifidobacterium animalis subsp. lactis Bl-04 8008280 YP_002967750.1 CDS Balac_0299 NC_012814.1 365642 366583 R COG0679 Predicted permeases; hypothetical protein complement(365642..366583) Bifidobacterium animalis subsp. lactis Bl-04 8008281 YP_002967751.1 CDS Balac_0300 NC_012814.1 366797 368017 D catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate; succinyl-diaminopimelate desuccinylase 366797..368017 Bifidobacterium animalis subsp. lactis Bl-04 8008282 YP_002967752.1 CDS Balac_0301 NC_012814.1 368580 371666 D COG1530 Ribonucleases G and E; ribonuclease G 368580..371666 Bifidobacterium animalis subsp. lactis Bl-04 8008283 YP_002967753.1 CDS rplU NC_012814.1 372654 372962 D COG0261 Ribosomal protein L21; 50S ribosomal protein L21 372654..372962 Bifidobacterium animalis subsp. lactis Bl-04 8008284 YP_002967754.1 CDS rpmA NC_012814.1 373002 373253 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 373002..373253 Bifidobacterium animalis subsp. lactis Bl-04 8008285 YP_002967755.1 CDS obgE NC_012814.1 373438 375150 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 373438..375150 Bifidobacterium animalis subsp. lactis Bl-04 8008286 YP_002967756.1 CDS Balac_0305 NC_012814.1 375211 376344 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 375211..376344 Bifidobacterium animalis subsp. lactis Bl-04 8008287 YP_002967757.1 CDS Balac_0306 NC_012814.1 376458 377675 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 376458..377675 Bifidobacterium animalis subsp. lactis Bl-04 8008288 YP_002967758.1 CDS secE NC_012814.1 377938 378168 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 377938..378168 Bifidobacterium animalis subsp. lactis Bl-04 8009567 YP_002967759.1 CDS Balac_0309 NC_012814.1 378299 379291 D COG0250 Transcription antiterminator; transcription antiterminator 378299..379291 Bifidobacterium animalis subsp. lactis Bl-04 8008290 YP_002967760.1 CDS rplK NC_012814.1 379533 379964 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 379533..379964 Bifidobacterium animalis subsp. lactis Bl-04 8008291 YP_002967761.1 CDS rplA NC_012814.1 379984 380673 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 379984..380673 Bifidobacterium animalis subsp. lactis Bl-04 8008292 YP_002967762.1 CDS Balac_0312 NC_012814.1 380796 381587 D COG2508 Regulator of polyketide synthase expression; hypothetical protein 380796..381587 Bifidobacterium animalis subsp. lactis Bl-04 8008293 YP_002967763.1 CDS Balac_0313 NC_012814.1 381645 382541 D COG0340 Biotin-(acetyl-CoA carboxylase ligase); hypothetical protein 381645..382541 Bifidobacterium animalis subsp. lactis Bl-04 8008294 YP_002967764.1 CDS Balac_0314 NC_012814.1 382563 383192 R COG1268 Uncharacterized conserved protein; hypothetical protein complement(382563..383192) Bifidobacterium animalis subsp. lactis Bl-04 8008295 YP_002967765.1 CDS Balac_0315 NC_012814.1 383488 385362 D COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit; JadJ 383488..385362 Bifidobacterium animalis subsp. lactis Bl-04 8008296 YP_002967766.1 CDS Balac_0316 NC_012814.1 385364 386995 D COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); propionyl-CoA carboxylase subunit beta 385364..386995 Bifidobacterium animalis subsp. lactis Bl-04 8008297 YP_002967767.1 CDS Balac_0317 NC_012814.1 387129 396446 D COG0331 (acyl-carrier-proteinS-malonyltransferase); fatty acid synthase Fas 387129..396446 Bifidobacterium animalis subsp. lactis Bl-04 8008298 YP_002967768.1 CDS Balac_0318 NC_012814.1 396679 397125 D COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); holo-ACP synthase 396679..397125 Bifidobacterium animalis subsp. lactis Bl-04 8008299 YP_002967769.1 CDS Balac_0320 NC_012814.1 397338 398048 D hypothetical protein 397338..398048 Bifidobacterium animalis subsp. lactis Bl-04 8009568 YP_002967770.1 CDS Balac_0321 NC_012814.1 398124 399095 R COG0039 Malate/lactate dehydrogenases; L-lactate dehydrogenase complement(398124..399095) Bifidobacterium animalis subsp. lactis Bl-04 8008301 YP_002967771.1 CDS rpsO NC_012814.1 399403 399672 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 399403..399672 Bifidobacterium animalis subsp. lactis Bl-04 8008302 YP_002967772.1 CDS Balac_0323 NC_012814.1 400014 402635 D COG1185 Polyribonucleotide nucleotidyltransferase(polynucleotide phosphorylase); polynucleotide phosphorylase 400014..402635 Bifidobacterium animalis subsp. lactis Bl-04 8008303 YP_002967773.1 CDS Balac_0324 NC_012814.1 402924 403499 D COG1704 Uncharacterized conserved protein; LemA-like protein 402924..403499 Bifidobacterium animalis subsp. lactis Bl-04 8008304 YP_002967774.1 CDS Balac_0325 NC_012814.1 403585 405801 D COG4907 Predicted membrane protein; hypothetical protein 403585..405801 Bifidobacterium animalis subsp. lactis Bl-04 8008305 YP_002967775.1 CDS nrdF NC_012814.1 405798 406763 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(405798..406763) Bifidobacterium animalis subsp. lactis Bl-04 8008306 YP_002967776.1 CDS Balac_0327 NC_012814.1 406803 408899 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(406803..408899) Bifidobacterium animalis subsp. lactis Bl-04 8008307 YP_002967777.1 CDS nrdI NC_012814.1 408939 409364 R in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein complement(408939..409364) Bifidobacterium animalis subsp. lactis Bl-04 8008308 YP_002967778.1 CDS Balac_0329 NC_012814.1 409361 409624 R COG0695 Glutaredoxin and related proteins; glutaredoxin-like protein NrdH complement(409361..409624) Bifidobacterium animalis subsp. lactis Bl-04 8008309 YP_002967779.1 CDS Balac_0330 NC_012814.1 409933 410796 D COG0667 Predicted oxidoreductases (related toaryl-alcohol dehydrogenases); aldo/keto reductase 409933..410796 Bifidobacterium animalis subsp. lactis Bl-04 8008310 YP_002967780.1 CDS Balac_0331 NC_012814.1 411107 412642 D COG0826 Collagenase and related proteases; protease or peptidase 411107..412642 Bifidobacterium animalis subsp. lactis Bl-04 8008311 YP_002967781.1 CDS Balac_0332 NC_012814.1 412971 414176 D COG1496 Uncharacterized conserved protein; hypothetical protein 412971..414176 Bifidobacterium animalis subsp. lactis Bl-04 8008312 YP_002967782.1 CDS Balac_0333 NC_012814.1 414203 415030 D COG1211 4-diphosphocytidyl-2-methyl-D-erithritolsynthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 414203..415030 Bifidobacterium animalis subsp. lactis Bl-04 8008313 YP_002967783.1 CDS Balac_0334 NC_012814.1 414990 415709 D COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase); Pyrrolidone-carboxylate peptidase 414990..415709 Bifidobacterium animalis subsp. lactis Bl-04 8008314 YP_002967784.1 CDS Balac_0335 NC_012814.1 415868 417586 D COG3599 Cell division initiation protein; hypothetical protein 415868..417586 Bifidobacterium animalis subsp. lactis Bl-04 8008315 YP_002967785.1 CDS Balac_0336 NC_012814.1 417767 419107 D COG3579 Aminopeptidase C; aminopeptidase 417767..419107 Bifidobacterium animalis subsp. lactis Bl-04 8008316 YP_002967786.1 CDS Balac_0337 NC_012814.1 419579 420709 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 419579..420709 Bifidobacterium animalis subsp. lactis Bl-04 8008317 YP_002967787.1 CDS Balac_0338 NC_012814.1 420924 422927 D COG1835 Predicted acyltransferases; hypothetical protein 420924..422927 Bifidobacterium animalis subsp. lactis Bl-04 8008318 YP_002967788.1 CDS Balac_0339 NC_012814.1 423000 424247 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 423000..424247 Bifidobacterium animalis subsp. lactis Bl-04 8008319 YP_002967789.1 CDS Balac_0340 NC_012814.1 424326 425018 D COG0775 Nucleoside phosphorylase; 5'-methylthioadenosine nucleosidase 424326..425018 Bifidobacterium animalis subsp. lactis Bl-04 8008320 YP_002967790.1 CDS Balac_0341 NC_012814.1 425050 426273 D COG0642 Signal transduction histidine kinase; signal transduction histidine kinase 425050..426273 Bifidobacterium animalis subsp. lactis Bl-04 8008321 YP_002967791.1 CDS Balac_0342 NC_012814.1 426270 426977 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component system response regulator 426270..426977 Bifidobacterium animalis subsp. lactis Bl-04 8008322 YP_002967792.1 CDS Balac_0343 NC_012814.1 427064 428179 D COG0226 ABC-type phosphate transport system, periplasmic component; phosphate ABC transporter substrate-binding protein 427064..428179 Bifidobacterium animalis subsp. lactis Bl-04 8008323 YP_002967793.1 CDS Balac_0344 NC_012814.1 428184 429164 D COG0573 ABC-type phosphate transport system, permease component; phosphate ABC transporter permease 428184..429164 Bifidobacterium animalis subsp. lactis Bl-04 8008324 YP_002967794.1 CDS Balac_0345 NC_012814.1 429161 430153 D COG0581 ABC-type phosphate transport system, permease component; phosphate ABC transporter substrate-binding protein 429161..430153 Bifidobacterium animalis subsp. lactis Bl-04 8008325 YP_002967795.1 CDS Balac_0346 NC_012814.1 430190 430969 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 430190..430969 Bifidobacterium animalis subsp. lactis Bl-04 8008326 YP_002967796.1 CDS Balac_0347 NC_012814.1 431261 432601 D COG2252 Permeases; hypothetical protein 431261..432601 Bifidobacterium animalis subsp. lactis Bl-04 8008327 YP_002967797.1 CDS Balac_0348 NC_012814.1 432936 433859 R COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; metal ion ABC transporter periplasmic component complement(432936..433859) Bifidobacterium animalis subsp. lactis Bl-04 8008328 YP_002967798.1 CDS rplJ NC_012814.1 434212 434733 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 434212..434733 Bifidobacterium animalis subsp. lactis Bl-04 8008329 YP_002967799.1 CDS rplL NC_012814.1 434844 435224 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 434844..435224 Bifidobacterium animalis subsp. lactis Bl-04 8008330 YP_002967800.1 CDS Balac_0351 NC_012814.1 435507 437081 D COG1716 FOG: FHA domain; Tfp pilus assembly protein 435507..437081 Bifidobacterium animalis subsp. lactis Bl-04 8008331 YP_002967801.1 CDS Balac_0352 NC_012814.1 437078 440725 D COG1112 Superfamily I DNA and RNA helicases and helicase subunits; hypothetical protein 437078..440725 Bifidobacterium animalis subsp. lactis Bl-04 8008332 YP_002967802.1 CDS Balac_0353 NC_012814.1 440760 441002 D hypothetical protein 440760..441002 Bifidobacterium animalis subsp. lactis Bl-04 8008333 YP_002967803.1 CDS Balac_0354 NC_012814.1 441021 441578 R hypothetical protein complement(441021..441578) Bifidobacterium animalis subsp. lactis Bl-04 8008334 YP_002967804.1 CDS Balac_0355 NC_012814.1 441817 442008 R COG2331 Uncharacterized protein conserved in bacteria; hypothetical protein complement(441817..442008) Bifidobacterium animalis subsp. lactis Bl-04 8008335 YP_002967805.1 CDS Balac_0356 NC_012814.1 442140 442877 R COG0212 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(442140..442877) Bifidobacterium animalis subsp. lactis Bl-04 8008336 YP_002967806.1 CDS Balac_0357 NC_012814.1 443034 443717 D COG1670 Acetyltransferases, including N-acetylasesof ribosomal proteins; acetytransferase 443034..443717 Bifidobacterium animalis subsp. lactis Bl-04 8008337 YP_002967807.1 CDS Balac_0358 NC_012814.1 443739 444962 D hypothetical protein 443739..444962 Bifidobacterium animalis subsp. lactis Bl-04 8008338 YP_002967808.1 CDS groES NC_012814.1 445184 445480 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 445184..445480 Bifidobacterium animalis subsp. lactis Bl-04 8008339 YP_002967809.1 CDS rpmG NC_012814.1 446149 446319 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 446149..446319 Bifidobacterium animalis subsp. lactis Bl-04 8009571 YP_002967810.1 CDS Balac_0364 NC_012814.1 446413 447633 D COG0812 UDP-N-acetylmuramate dehydrogenase; UDP-N-acetylenolpyruvoylglucosamine reductase 446413..447633 Bifidobacterium animalis subsp. lactis Bl-04 8008341 YP_002967811.1 CDS Balac_0365 NC_012814.1 448005 449507 D COG0531 Amino acid transporters; Amino acid transporter 448005..449507 Bifidobacterium animalis subsp. lactis Bl-04 8008342 YP_002967812.1 CDS Balac_0366 NC_012814.1 449673 449996 D COG1146 Ferredoxin; ferredoxin 449673..449996 Bifidobacterium animalis subsp. lactis Bl-04 8008343 YP_002967813.1 CDS Balac_0367 NC_012814.1 450091 451248 D catalyzes the formation of N-succinyl-LL-2,6-diaminopimelate from N-succinyl-L-2-amino-6-oxopimelate in lysine biosynthesis; N-succinyldiaminopimelate aminotransferase 450091..451248 Bifidobacterium animalis subsp. lactis Bl-04 8008344 YP_002967814.1 CDS Balac_0368 NC_012814.1 451286 452602 R COG0389 Nucleotidyltransferase/DNA polymeraseinvolved in DNA repair; DNA-damage-inducible protein P complement(451286..452602) Bifidobacterium animalis subsp. lactis Bl-04 8008345 YP_002967815.1 CDS Balac_0370 NC_012814.1 453222 454229 D COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; 2-hydroxyacid dehydrogenase 453222..454229 Bifidobacterium animalis subsp. lactis Bl-04 8009572 YP_002967816.1 CDS Balac_0371 NC_012814.1 454286 454921 D COG1739 Uncharacterized conserved protein; hypothetical protein 454286..454921 Bifidobacterium animalis subsp. lactis Bl-04 8008347 YP_002967817.1 CDS Balac_0372 NC_012814.1 454900 455718 D AbrB family transcriptional regulator 454900..455718 Bifidobacterium animalis subsp. lactis Bl-04 8008348 YP_002967818.1 CDS Balac_0373 NC_012814.1 455827 457995 D COG1640 4-alpha-glucanotransferase; 4-alpha-glucanotransferase 455827..457995 Bifidobacterium animalis subsp. lactis Bl-04 8008349 YP_002967819.1 CDS rplM NC_012814.1 458277 458726 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 458277..458726 Bifidobacterium animalis subsp. lactis Bl-04 8008350 YP_002967820.1 CDS rpsI NC_012814.1 458746 459237 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 458746..459237 Bifidobacterium animalis subsp. lactis Bl-04 8008351 YP_002967821.1 CDS Balac_0376 NC_012814.1 459345 462041 R COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; glycogen operon protein GlgX complement(459345..462041) Bifidobacterium animalis subsp. lactis Bl-04 8008352 YP_002967822.1 CDS Balac_0377 NC_012814.1 462100 463191 R COG1940 Transcriptional regulator/sugar kinase; Rok family repressor complement(462100..463191) Bifidobacterium animalis subsp. lactis Bl-04 8008353 YP_002967823.1 CDS Balac_0378 NC_012814.1 463598 466345 D COG1012 NAD-dependent aldehyde dehydrogenases; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 463598..466345 Bifidobacterium animalis subsp. lactis Bl-04 8008354 YP_002967824.1 CDS Balac_0379 NC_012814.1 466661 467635 R hypothetical protein complement(466661..467635) Bifidobacterium animalis subsp. lactis Bl-04 8008355 YP_002967825.1 CDS Balac_0380 NC_012814.1 467831 468580 D hypothetical protein 467831..468580 Bifidobacterium animalis subsp. lactis Bl-04 8008356 YP_002967826.1 CDS rpsJ NC_012814.1 468858 469166 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 468858..469166 Bifidobacterium animalis subsp. lactis Bl-04 8008357 YP_002967827.1 CDS rplC NC_012814.1 469184 469834 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 469184..469834 Bifidobacterium animalis subsp. lactis Bl-04 8008358 YP_002967828.1 CDS rplD NC_012814.1 469840 470496 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 469840..470496 Bifidobacterium animalis subsp. lactis Bl-04 8008359 YP_002967829.1 CDS rplW NC_012814.1 470501 470797 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 470501..470797 Bifidobacterium animalis subsp. lactis Bl-04 8008360 YP_002967830.1 CDS rplB NC_012814.1 470835 471665 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 470835..471665 Bifidobacterium animalis subsp. lactis Bl-04 8008361 YP_002967831.1 CDS rpsS NC_012814.1 471681 471959 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 471681..471959 Bifidobacterium animalis subsp. lactis Bl-04 8008362 YP_002967832.2 CDS rplV NC_012814.1 471981 472340 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 471981..472340 Bifidobacterium animalis subsp. lactis Bl-04 8008363 YP_002967833.1 CDS rpsC NC_012814.1 472343 473176 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 472343..473176 Bifidobacterium animalis subsp. lactis Bl-04 8008364 YP_002967834.1 CDS rplP NC_012814.1 473184 473603 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 473184..473603 Bifidobacterium animalis subsp. lactis Bl-04 8008365 YP_002967835.1 CDS Balac_0390 NC_012814.1 473603 473851 D COG0255 Ribosomal protein L29; Ribosomal protein L29 473603..473851 Bifidobacterium animalis subsp. lactis Bl-04 8008366 YP_002967836.1 CDS rpsQ NC_012814.1 473861 474121 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 473861..474121 Bifidobacterium animalis subsp. lactis Bl-04 8008367 YP_002967837.1 CDS rplN NC_012814.1 474210 474578 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 474210..474578 Bifidobacterium animalis subsp. lactis Bl-04 8008368 YP_002967838.1 CDS rplX NC_012814.1 474580 474915 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 474580..474915 Bifidobacterium animalis subsp. lactis Bl-04 8008369 YP_002967839.1 CDS rplE NC_012814.1 474912 475496 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 474912..475496 Bifidobacterium animalis subsp. lactis Bl-04 8008370 YP_002967840.1 CDS rpsN NC_012814.1 475498 475683 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 475498..475683 Bifidobacterium animalis subsp. lactis Bl-04 8008371 YP_002967841.1 CDS rpsH NC_012814.1 475771 476169 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 475771..476169 Bifidobacterium animalis subsp. lactis Bl-04 8008372 YP_002967842.1 CDS rplF NC_012814.1 476186 476725 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 476186..476725 Bifidobacterium animalis subsp. lactis Bl-04 8008373 YP_002967843.1 CDS rplR NC_012814.1 476727 477098 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 476727..477098 Bifidobacterium animalis subsp. lactis Bl-04 8008374 YP_002967844.1 CDS rpsE NC_012814.1 477122 477826 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 477122..477826 Bifidobacterium animalis subsp. lactis Bl-04 8008375 YP_002967845.1 CDS rpmD NC_012814.1 477826 478008 D COG1841 Ribosomal protein L30/L7E; 50S ribosomal protein L30 477826..478008 Bifidobacterium animalis subsp. lactis Bl-04 8008376 YP_002967846.1 CDS rplO NC_012814.1 478011 478469 D late assembly protein; 50S ribosomal protein L15 478011..478469 Bifidobacterium animalis subsp. lactis Bl-04 8008377 YP_002967847.1 CDS secY NC_012814.1 478707 480056 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 478707..480056 Bifidobacterium animalis subsp. lactis Bl-04 8008378 YP_002967848.1 CDS adk NC_012814.1 480229 480801 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 480229..480801 Bifidobacterium animalis subsp. lactis Bl-04 8008379 YP_002967849.1 CDS infA NC_012814.1 481050 481268 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 481050..481268 Bifidobacterium animalis subsp. lactis Bl-04 8008380 YP_002967850.1 CDS rpmJ NC_012814.1 481307 481420 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 481307..481420 Bifidobacterium animalis subsp. lactis Bl-04 8008381 YP_002967851.1 CDS rpsM NC_012814.1 481559 481936 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 481559..481936 Bifidobacterium animalis subsp. lactis Bl-04 8008382 YP_002967852.1 CDS Balac_0407 NC_012814.1 482013 482411 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 482013..482411 Bifidobacterium animalis subsp. lactis Bl-04 8008383 YP_002967853.1 CDS Balac_0408 NC_012814.1 482490 483485 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 482490..483485 Bifidobacterium animalis subsp. lactis Bl-04 8008384 YP_002967854.1 CDS rplQ NC_012814.1 483570 484016 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 483570..484016 Bifidobacterium animalis subsp. lactis Bl-04 8008385 YP_002967855.1 CDS Balac_0410 NC_012814.1 484238 485014 D COG0101 Pseudouridylate synthase; tRNA pseudouridine synthase A 484238..485014 Bifidobacterium animalis subsp. lactis Bl-04 8008386 YP_002967856.1 CDS Balac_0412 NC_012814.1 485393 486304 R hypothetical protein complement(485393..486304) Bifidobacterium animalis subsp. lactis Bl-04 8009573 YP_002967857.1 CDS nusA NC_012814.1 486417 487493 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 486417..487493 Bifidobacterium animalis subsp. lactis Bl-04 8008388 YP_002967858.1 CDS infB NC_012814.1 487703 490537 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 487703..490537 Bifidobacterium animalis subsp. lactis Bl-04 8008389 YP_002967859.1 CDS rbfA NC_012814.1 490691 491344 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 490691..491344 Bifidobacterium animalis subsp. lactis Bl-04 8008390 YP_002967860.1 CDS Balac_0416 NC_012814.1 491348 492400 D COG0130 Pseudouridine synthase; tRNA pseudouridine synthase B 491348..492400 Bifidobacterium animalis subsp. lactis Bl-04 8008391 YP_002967861.1 CDS Balac_0417 NC_012814.1 492408 493694 D COG0196 FAD synthase; riboflavin kinase 492408..493694 Bifidobacterium animalis subsp. lactis Bl-04 8008392 YP_002967862.1 CDS Balac_0418 NC_012814.1 493706 495181 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(493706..495181) Bifidobacterium animalis subsp. lactis Bl-04 8008393 YP_002967863.1 CDS Balac_0419 NC_012814.1 495404 495985 D hypothetical protein 495404..495985 Bifidobacterium animalis subsp. lactis Bl-04 8008394 YP_002967864.1 CDS Balac_0420 NC_012814.1 496318 497019 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(496318..497019) Bifidobacterium animalis subsp. lactis Bl-04 8008395 YP_002967865.1 CDS Balac_0421 NC_012814.1 497109 498098 R COG0328 Ribonuclease HI; ribonuclease H complement(497109..498098) Bifidobacterium animalis subsp. lactis Bl-04 8008396 YP_002967866.1 CDS Balac_0423 NC_012814.1 499326 500612 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(499326..500612) Bifidobacterium animalis subsp. lactis Bl-04 8009574 YP_002967867.1 CDS Balac_0424 NC_012814.1 500784 501941 D COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; hypothetical protein 500784..501941 Bifidobacterium animalis subsp. lactis Bl-04 8008398 YP_002967868.1 CDS Balac_0425 NC_012814.1 502101 503777 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 502101..503777 Bifidobacterium animalis subsp. lactis Bl-04 8008399 YP_002967869.1 CDS Balac_0426 NC_012814.1 503899 505458 R COG1073 Hydrolases of the alpha/beta superfamily; hypothetical protein complement(503899..505458) Bifidobacterium animalis subsp. lactis Bl-04 8008400 YP_002967870.1 CDS Balac_0427 NC_012814.1 505549 506169 R hypothetical protein complement(505549..506169) Bifidobacterium animalis subsp. lactis Bl-04 8008401 YP_002967871.1 CDS Balac_0428 NC_012814.1 506199 508331 R COG0457 FOG: TPR repeat; hypothetical protein complement(506199..508331) Bifidobacterium animalis subsp. lactis Bl-04 8008402 YP_002967872.1 CDS Balac_0429 NC_012814.1 508386 509096 R COG2197 Response regulator containing a CheY-likereceiver domain and an HTH DNA-binding domain; two-component system response regulator complement(508386..509096) Bifidobacterium animalis subsp. lactis Bl-04 8008403 YP_002967873.1 CDS Balac_0430 NC_012814.1 509389 510849 R COG1983 Putative stress-responsive transcriptional regulator; histidine kinase sensor of two component system complement(509389..510849) Bifidobacterium animalis subsp. lactis Bl-04 8008404 YP_002967874.1 CDS Balac_0431 NC_012814.1 510963 513050 D COG1983 Putative stress-responsive transcriptional regulator; hypothetical protein 510963..513050 Bifidobacterium animalis subsp. lactis Bl-04 8008405 YP_002967875.1 CDS Balac_0432 NC_012814.1 513067 513711 D hypothetical protein 513067..513711 Bifidobacterium animalis subsp. lactis Bl-04 8008406 YP_002967876.1 CDS Balac_0433 NC_012814.1 514002 515201 D COG0626 Cystathionine beta-lyases/cystathioninegamma-synthases; cystathionine beta-lyase 514002..515201 Bifidobacterium animalis subsp. lactis Bl-04 8008407 YP_002967877.1 CDS Balac_0434 NC_012814.1 515248 515949 D COG2873 O-acetylhomoserine sulfhydrylase; cysteine synthase 515248..515949 Bifidobacterium animalis subsp. lactis Bl-04 8008408 YP_002967878.1 CDS Balac_0435 NC_012814.1 515925 516122 D COG2873 O-acetylhomoserine sulfhydrylase; O-acetylhomoserine sulfhydrylase 515925..516122 Bifidobacterium animalis subsp. lactis Bl-04 8008409 YP_002967879.1 CDS lysS NC_012814.1 516537 518153 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 516537..518153 Bifidobacterium animalis subsp. lactis Bl-04 8009575 YP_002967880.1 CDS Balac_0438 NC_012814.1 518304 519365 D hypothetical protein 518304..519365 Bifidobacterium animalis subsp. lactis Bl-04 8008411 YP_002967881.1 CDS Balac_0439 NC_012814.1 519670 519783 D hypothetical protein 519670..519783 Bifidobacterium animalis subsp. lactis Bl-04 8008412 YP_002967882.1 CDS Balac_0440 NC_012814.1 520131 521486 D hypothetical protein 520131..521486 Bifidobacterium animalis subsp. lactis Bl-04 8008413 YP_002967883.1 CDS Balac_0441 NC_012814.1 521697 523055 D COG3579 Aminopeptidase C; aminopeptidase 521697..523055 Bifidobacterium animalis subsp. lactis Bl-04 8008414 YP_002967884.1 CDS Balac_0442 NC_012814.1 523159 525282 D COG0531 Amino acid transporters; hypothetical protein 523159..525282 Bifidobacterium animalis subsp. lactis Bl-04 8008415 YP_002967885.1 CDS Balac_0443 NC_012814.1 525400 526893 D COG2939 Carboxypeptidase C (cathepsin A); carboxypeptidase C 525400..526893 Bifidobacterium animalis subsp. lactis Bl-04 8008416 YP_002967886.1 CDS Balac_0444 NC_012814.1 527102 528631 D COG0531 Amino acid transporters; amino acid transporter 527102..528631 Bifidobacterium animalis subsp. lactis Bl-04 8008417 YP_002967887.1 CDS Balac_0445 NC_012814.1 528747 529790 D COG1575 1,4-dihydroxy-2-naphthoateoctaprenyl transferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 528747..529790 Bifidobacterium animalis subsp. lactis Bl-04 8008418 YP_002967888.1 CDS gpmA NC_012814.1 529888 530628 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 529888..530628 Bifidobacterium animalis subsp. lactis Bl-04 8008419 YP_002967889.1 CDS Balac_0447 NC_012814.1 531276 533402 D in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 531276..533402 Bifidobacterium animalis subsp. lactis Bl-04 8008420 YP_002967890.1 CDS Balac_0448 NC_012814.1 534589 535959 R COG1482 Phosphomannose isomerase; mannose-6-phosphate isomerase complement(534589..535959) Bifidobacterium animalis subsp. lactis Bl-04 8008421 YP_002967891.1 CDS Balac_0449 NC_012814.1 536294 537682 R COG0642 Signal transduction histidine kinase; signal transduction histidine kinase complement(536294..537682) Bifidobacterium animalis subsp. lactis Bl-04 8008422 YP_002967892.1 CDS Balac_0450 NC_012814.1 537852 538532 D COG0704 Phosphate uptake regulator; two-component system response regulator 537852..538532 Bifidobacterium animalis subsp. lactis Bl-04 8008423 YP_002967893.1 CDS Balac_0451 NC_012814.1 538689 539801 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase complement(538689..539801) Bifidobacterium animalis subsp. lactis Bl-04 8008424 YP_002967894.1 CDS Balac_0452 NC_012814.1 540165 541190 D COG3942 Surface antigen; Surface antigen protein 540165..541190 Bifidobacterium animalis subsp. lactis Bl-04 8008425 YP_002967895.1 CDS Balac_0453 NC_012814.1 541388 541546 D hypothetical protein 541388..541546 Bifidobacterium animalis subsp. lactis Bl-04 8008426 YP_002967896.1 CDS Balac_0454 NC_012814.1 541661 542470 D COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Cell wall-associated hydrolase 541661..542470 Bifidobacterium animalis subsp. lactis Bl-04 8008427 YP_002967897.1 CDS Balac_0455 NC_012814.1 542964 544019 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; Universal stress protein 542964..544019 Bifidobacterium animalis subsp. lactis Bl-04 8008428 YP_002967898.1 CDS Balac_0456 NC_012814.1 544108 544521 R COG1765 Predicted redox protein, regulator of disulfide bond formation; hypothetical protein complement(544108..544521) Bifidobacterium animalis subsp. lactis Bl-04 8008429 YP_002967899.1 CDS thyA NC_012814.1 544655 545527 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 544655..545527 Bifidobacterium animalis subsp. lactis Bl-04 8008430 YP_002967900.1 CDS Balac_0458 NC_012814.1 545653 546336 D COG0262 Dihydrofolate reductase; dihydrofolate reductase 545653..546336 Bifidobacterium animalis subsp. lactis Bl-04 8008431 YP_002967901.1 CDS Balac_0459 NC_012814.1 546371 546907 D COG0394 Protein-tyrosine-phosphatase; low molecular weight protein-tyrosine-phosphatase 546371..546907 Bifidobacterium animalis subsp. lactis Bl-04 8008432 YP_002967902.1 CDS Balac_0460 NC_012814.1 547006 548016 R COG1087 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(547006..548016) Bifidobacterium animalis subsp. lactis Bl-04 8008433 YP_002967903.1 CDS Balac_0461 NC_012814.1 548353 549198 D COG0220 Predicted S-adenosylmethionine-dependent methyltransferase; tRNA (guanine-N(7--methyltransferase)) 548353..549198 Bifidobacterium animalis subsp. lactis Bl-04 8008434 YP_002967904.1 CDS Balac_0463 NC_012814.1 549808 550875 R COG1434 Uncharacterized conserved protein; hypothetical protein complement(549808..550875) Bifidobacterium animalis subsp. lactis Bl-04 8009576 YP_002967905.1 CDS Balac_0464 NC_012814.1 551022 552017 D putative 5'-nucleotidase 551022..552017 Bifidobacterium animalis subsp. lactis Bl-04 8008436 YP_002967906.1 CDS Balac_0465 NC_012814.1 552271 552696 D COG3642 Mn2+-dependent serine/threonine protein kinase; hypothetical protein 552271..552696 Bifidobacterium animalis subsp. lactis Bl-04 8008437 YP_002967907.1 CDS Balac_0466 NC_012814.1 552722 554269 D COG3593 Predicted ATP-dependent endonuclease of the OLD family; hypothetical protein 552722..554269 Bifidobacterium animalis subsp. lactis Bl-04 8008438 YP_002967908.1 CDS Balac_0467 NC_012814.1 554403 554765 D hypothetical protein 554403..554765 Bifidobacterium animalis subsp. lactis Bl-04 8008439 YP_002967909.1 CDS Balac_0468 NC_012814.1 554756 555559 D cutinase 554756..555559 Bifidobacterium animalis subsp. lactis Bl-04 8008440 YP_002967910.1 CDS Balac_0469 NC_012814.1 555508 556920 D COG4487 Uncharacterized protein conserved in bacteria; hypothetical protein 555508..556920 Bifidobacterium animalis subsp. lactis Bl-04 8008441 YP_002967911.1 CDS Balac_0470 NC_012814.1 557034 558608 D hypothetical protein 557034..558608 Bifidobacterium animalis subsp. lactis Bl-04 8008442 YP_002967912.1 CDS Balac_0471 NC_012814.1 558610 559419 D hypothetical protein 558610..559419 Bifidobacterium animalis subsp. lactis Bl-04 8008443 YP_002967913.1 CDS Balac_0472 NC_012814.1 559416 562913 D COG4913 Uncharacterized protein conserved in bacteria; hypothetical protein 559416..562913 Bifidobacterium animalis subsp. lactis Bl-04 8008444 YP_002967914.1 CDS Balac_0473 NC_012814.1 562910 564130 D COG4924 Uncharacterized protein conserved in bacteria; hypothetical protein 562910..564130 Bifidobacterium animalis subsp. lactis Bl-04 8008445 YP_002967915.1 CDS Balac_0474 NC_012814.1 564498 564890 R COG3189 Uncharacterized conserved protein; hypothetical protein complement(564498..564890) Bifidobacterium animalis subsp. lactis Bl-04 8008446 YP_002967916.1 CDS lacS NC_012814.1 565133 566650 R COG2211 Na+/melibiose symporter and related transporters; galactoside symporter complement(565133..566650) Bifidobacterium animalis subsp. lactis Bl-04 8008447 YP_002967917.1 CDS lacZ NC_012814.1 566960 570163 D COG3250 Beta-galactosidase/beta-glucuronidase; LacZ 566960..570163 Bifidobacterium animalis subsp. lactis Bl-04 8008448 YP_002967918.1 CDS Balac_0477 NC_012814.1 570266 571261 R COG1609 Transcriptional regulators; LacI-type transcriptional regulator complement(570266..571261) Bifidobacterium animalis subsp. lactis Bl-04 8008449 YP_002967919.1 CDS Balac_0478 NC_012814.1 571695 572303 D COG1011 Predicted hydrolase (HAD superfamily); alpha beta hydrolase 571695..572303 Bifidobacterium animalis subsp. lactis Bl-04 8008450 YP_002967920.1 CDS Balac_0479 NC_012814.1 572430 572825 R hypothetical protein complement(572430..572825) Bifidobacterium animalis subsp. lactis Bl-04 8008451 YP_002967921.1 CDS Balac_0480 NC_012814.1 572972 573562 D hypothetical protein 572972..573562 Bifidobacterium animalis subsp. lactis Bl-04 8008452 YP_002967922.1 CDS Balac_0481 NC_012814.1 573559 573732 D hypothetical protein 573559..573732 Bifidobacterium animalis subsp. lactis Bl-04 8008453 YP_002967923.1 CDS Balac_0482 NC_012814.1 573742 574242 D hypothetical protein 573742..574242 Bifidobacterium animalis subsp. lactis Bl-04 8008454 YP_002967924.1 CDS Balac_0483 NC_012814.1 574340 575683 R COG1653 ABC-type sugar transport system, periplasmic component; MalE-type ABC sugar transport system periplasmic component complement(574340..575683) Bifidobacterium animalis subsp. lactis Bl-04 8008455 YP_002967925.1 CDS Balac_0484 NC_012814.1 575929 578016 R COG1874 Beta-galactosidase; beta-galactosidase complement(575929..578016) Bifidobacterium animalis subsp. lactis Bl-04 8008456 YP_002967926.1 CDS Balac_0485 NC_012814.1 578058 579038 R COG0395 ABC-type sugar transport system, permease component; sugar ABC transporter permease complement(578058..579038) Bifidobacterium animalis subsp. lactis Bl-04 8008457 YP_002967927.1 CDS Balac_0486 NC_012814.1 579058 580026 R COG1175 ABC-type sugar transport systems, permease components; MalF-type ABC sugar transport systems permease complement(579058..580026) Bifidobacterium animalis subsp. lactis Bl-04 8008458 YP_002967928.1 CDS Balac_0487 NC_012814.1 580313 581311 D COG1609 Transcriptional regulators; LacI-type transcriptional regulator 580313..581311 Bifidobacterium animalis subsp. lactis Bl-04 8008459 YP_002967929.1 CDS Balac_0491 NC_012814.1 581933 582958 R COG0463 Glycosyl transferases involved in cell wall biogenesis; glycosyltransferase complement(581933..582958) Bifidobacterium animalis subsp. lactis Bl-04 8009579 YP_002967930.1 CDS Balac_0492 NC_012814.1 583089 584678 D COG0628 Predicted permease; hypothetical protein 583089..584678 Bifidobacterium animalis subsp. lactis Bl-04 8008461 YP_002967931.1 CDS Balac_0493 NC_012814.1 584678 585964 D COG1215 Glycosyltransferases, probably involved in cell wall biogenesis; hypothetical protein 584678..585964 Bifidobacterium animalis subsp. lactis Bl-04 8008462 YP_002967932.1 CDS Balac_0494 NC_012814.1 586187 587047 D COG1131 ABC-type multidrug transport system, ATPase component; multidrug ABC transporter ATPase 586187..587047 Bifidobacterium animalis subsp. lactis Bl-04 8008463 YP_002967933.1 CDS Balac_0495 NC_012814.1 587068 588765 D hypothetical protein 587068..588765 Bifidobacterium animalis subsp. lactis Bl-04 8008464 YP_002967934.1 CDS Balac_0496 NC_012814.1 588794 590266 D COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); D-alanyl-D-alanine carboxypeptidase 588794..590266 Bifidobacterium animalis subsp. lactis Bl-04 8008465 YP_002967935.1 CDS Balac_0497 NC_012814.1 590329 591459 D COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile-lysidine synthetase) 590329..591459 Bifidobacterium animalis subsp. lactis Bl-04 8008466 YP_002967936.1 CDS Balac_0498 NC_012814.1 591428 591991 D COG0634 Hypoxanthine-guaninephosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase 591428..591991 Bifidobacterium animalis subsp. lactis Bl-04 8008467 YP_002967937.1 CDS Balac_0499 NC_012814.1 591988 594084 D COG0465 ATP-dependent Zn proteases; hypothetical protein 591988..594084 Bifidobacterium animalis subsp. lactis Bl-04 8008468 YP_002967938.1 CDS Balac_0500 NC_012814.1 594170 595039 D Dihydroneopterin aldolase 594170..595039 Bifidobacterium animalis subsp. lactis Bl-04 8008469 YP_002967939.1 CDS Balac_0501 NC_012814.1 595036 595653 D hypothetical protein 595036..595653 Bifidobacterium animalis subsp. lactis Bl-04 8008470 YP_002967940.1 CDS Balac_0502 NC_012814.1 595720 596625 R COG1946 Acyl-CoA thioesterase; acyl-CoA thioesterase complement(595720..596625) Bifidobacterium animalis subsp. lactis Bl-04 8008471 YP_002967941.1 CDS Balac_0503 NC_012814.1 596863 598539 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(596863..598539) Bifidobacterium animalis subsp. lactis Bl-04 8008472 YP_002967942.1 CDS Balac_0504 NC_012814.1 598707 599135 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 598707..599135 Bifidobacterium animalis subsp. lactis Bl-04 8008473 YP_002967943.1 CDS Balac_0505 NC_012814.1 599167 600453 R COG2873 O-acetylhomoserine sulfhydrylase; O-acetylhomoserine thiol-lyase complement(599167..600453) Bifidobacterium animalis subsp. lactis Bl-04 8008474 YP_002967944.1 CDS Balac_0506 NC_012814.1 600741 601373 D COG4721 Predicted membrane protein; hypothetical protein 600741..601373 Bifidobacterium animalis subsp. lactis Bl-04 8008475 YP_002967945.1 CDS Balac_0507 NC_012814.1 601655 602563 D hypothetical protein 601655..602563 Bifidobacterium animalis subsp. lactis Bl-04 8008476 YP_002967946.1 CDS Balac_0509 NC_012814.1 602801 603649 R hypothetical protein complement(602801..603649) Bifidobacterium animalis subsp. lactis Bl-04 8009580 YP_002967947.1 CDS rpmE NC_012814.1 604071 604280 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 604071..604280 Bifidobacterium animalis subsp. lactis Bl-04 8008478 YP_002967948.1 CDS Balac_0511 NC_012814.1 604574 605926 D catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 604574..605926 Bifidobacterium animalis subsp. lactis Bl-04 8008479 YP_002967949.1 CDS Balac_0512 NC_012814.1 606331 608013 D COG3507 Beta-xylosidase; alpha-L-arabinofuranosidase 606331..608013 Bifidobacterium animalis subsp. lactis Bl-04 8008480 YP_002967950.1 CDS Balac_0513 NC_012814.1 608026 609030 R COG1609 Transcriptional regulators; LacI family transcriptional regulator complement(608026..609030) Bifidobacterium animalis subsp. lactis Bl-04 8008481 YP_002967951.1 CDS Balac_0514 NC_012814.1 609361 610638 D COG1653 ABC-type sugar transport system, periplasmic component; putative sugar transporter solute-binding protein 609361..610638 Bifidobacterium animalis subsp. lactis Bl-04 8008482 YP_002967952.1 CDS Balac_0515 NC_012814.1 610747 611805 D COG1175 ABC-type sugar transport systems, permease components; putative binding protein-dependent transporter 610747..611805 Bifidobacterium animalis subsp. lactis Bl-04 8008483 YP_002967953.1 CDS Balac_0516 NC_012814.1 611807 612676 D COG0395 ABC-type sugar transport system, permease component; putative binding protein-dependent transporter 611807..612676 Bifidobacterium animalis subsp. lactis Bl-04 8008484 YP_002967954.1 CDS Balac_0517 NC_012814.1 612754 614379 D COG3507 Beta-xylosidase; Beta-xylosidase 612754..614379 Bifidobacterium animalis subsp. lactis Bl-04 8008485 YP_002967955.1 CDS Balac_0518 NC_012814.1 614485 616410 D hypothetical protein 614485..616410 Bifidobacterium animalis subsp. lactis Bl-04 8008486 YP_002967956.1 CDS Balac_0519 NC_012814.1 616647 617810 D COG2272 Carboxylesterase type B; esterase 616647..617810 Bifidobacterium animalis subsp. lactis Bl-04 8008487 YP_002967957.1 CDS Balac_0520 NC_012814.1 617823 619382 R COG3507 Beta-xylosidase; pyridine nucleotide-disulfide oxidoreductase complement(617823..619382) Bifidobacterium animalis subsp. lactis Bl-04 8008488 YP_002967958.1 CDS Balac_0521 NC_012814.1 619472 621001 R COG1070 Sugar (pentulose and hexulose kinases); xylulose kinase complement(619472..621001) Bifidobacterium animalis subsp. lactis Bl-04 8008489 YP_002967959.1 CDS Balac_0522 NC_012814.1 621188 622423 D COG1940 Transcriptional regulator/sugar kinase; NagC-type transcriptional regulator 621188..622423 Bifidobacterium animalis subsp. lactis Bl-04 8008490 YP_002967960.1 CDS rpmE NC_012814.1 622552 622764 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 622552..622764 Bifidobacterium animalis subsp. lactis Bl-04 8008491 YP_002967961.1 CDS prfA NC_012814.1 622973 624070 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 622973..624070 Bifidobacterium animalis subsp. lactis Bl-04 8008492 YP_002967962.1 CDS Balac_0525 NC_012814.1 624131 625045 D COG2890 Methylase of polypeptide chain release factors; methylase of polypeptide chain release factor 624131..625045 Bifidobacterium animalis subsp. lactis Bl-04 8008493 YP_002967963.1 CDS Balac_0526 NC_012814.1 625175 625843 D COG0009 Putative translation factor (SUA5); Sua5/YciO/YrdC family protein 625175..625843 Bifidobacterium animalis subsp. lactis Bl-04 8008494 YP_002967964.1 CDS Balac_0527 NC_012814.1 625840 627000 D COG0472 UDP-N-acetylmuramyl pentapeptidephosphotransferase/UDP-N-acetylglucosamine-1- phosphatetransferase; UDP-phosphate-alpha-N- acetylglucosaminyltransferase 625840..627000 Bifidobacterium animalis subsp. lactis Bl-04 8008495 YP_002967965.1 CDS Balac_0528 NC_012814.1 627370 628824 D COG0516 IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 627370..628824 Bifidobacterium animalis subsp. lactis Bl-04 8008496 YP_002967966.1 CDS Balac_0529 NC_012814.1 629019 629672 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 629019..629672 Bifidobacterium animalis subsp. lactis Bl-04 8008497 YP_002967967.1 CDS Balac_0530 NC_012814.1 629744 630592 D COG0561 Predicted hydrolases of the HAD superfamily; hypothetical protein 629744..630592 Bifidobacterium animalis subsp. lactis Bl-04 8008498 YP_002967968.1 CDS Balac_0531 NC_012814.1 630633 632102 D COG0507 ATP-dependent exoDNAse (exonuclease V, alpha subunit - helicase superfamily I member); helicase 630633..632102 Bifidobacterium animalis subsp. lactis Bl-04 8008499 YP_002967969.1 CDS Balac_0532 NC_012814.1 632203 632634 D hypothetical protein 632203..632634 Bifidobacterium animalis subsp. lactis Bl-04 8008500 YP_002967970.1 CDS Balac_0533 NC_012814.1 632739 634556 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 632739..634556 Bifidobacterium animalis subsp. lactis Bl-04 8008501 YP_002967971.1 CDS Balac_0534 NC_012814.1 634786 635508 D COG0629 Single-stranded DNA-binding protein; hypothetical protein 634786..635508 Bifidobacterium animalis subsp. lactis Bl-04 8008502 YP_002967972.1 CDS Balac_0535 NC_012814.1 635598 637667 R COG3590 Predicted metalloendopeptidase; M13 family peptidase complement(635598..637667) Bifidobacterium animalis subsp. lactis Bl-04 8008503 YP_002967973.1 CDS Balac_0536 NC_012814.1 637928 638548 D COG3247 Uncharacterized conserved protein; hypothetical protein 637928..638548 Bifidobacterium animalis subsp. lactis Bl-04 8008504 YP_002967974.1 CDS Balac_0537 NC_012814.1 638699 639502 D COG0024 Methionine aminopeptidase; methionine aminopeptidase 638699..639502 Bifidobacterium animalis subsp. lactis Bl-04 8008505 YP_002967975.1 CDS Balac_0538 NC_012814.1 639727 641019 D COG0372 Citrate synthase; citrate synthase 1 639727..641019 Bifidobacterium animalis subsp. lactis Bl-04 8008506 YP_002967976.1 CDS Balac_0539 NC_012814.1 641041 641520 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(641041..641520) Bifidobacterium animalis subsp. lactis Bl-04 8008507 YP_002967977.1 CDS Balac_0540 NC_012814.1 641629 642612 R COG2171 TetrahydrodipicolinateN-succinyltransferase; hypothetical protein complement(641629..642612) Bifidobacterium animalis subsp. lactis Bl-04 8008508 YP_002967978.1 CDS Balac_0541 NC_012814.1 642920 643051 D hypothetical protein 642920..643051 Bifidobacterium animalis subsp. lactis Bl-04 8008509 YP_002967979.1 CDS prfB NC_012814.1 643205 644338 D recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 643205..644338 Bifidobacterium animalis subsp. lactis Bl-04 8008510 YP_002967980.1 CDS Balac_0543 NC_012814.1 644384 645712 D COG2884 Predicted ATPase involved in cell division; FtsE-like ATP binding protein in cell division 644384..645712 Bifidobacterium animalis subsp. lactis Bl-04 8008511 YP_002967981.1 CDS Balac_0544 NC_012814.1 645716 646639 D COG2177 Cell division protein; FtsX-like protein 645716..646639 Bifidobacterium animalis subsp. lactis Bl-04 8008512 YP_002967982.1 CDS Balac_0545 NC_012814.1 646865 648208 D COG3942 Surface antigen; Surface antigen 646865..648208 Bifidobacterium animalis subsp. lactis Bl-04 8008513 YP_002967983.1 CDS smpB NC_012814.1 648607 649098 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 648607..649098 Bifidobacterium animalis subsp. lactis Bl-04 8008514 YP_002967984.1 CDS Balac_0547 NC_012814.1 649177 649416 D hypothetical protein 649177..649416 Bifidobacterium animalis subsp. lactis Bl-04 8008515 YP_002967985.1 CDS Balac_0548 NC_012814.1 649463 650392 D COG0834 ABC-type amino acid transport/signaltransduction systems, periplasmic component/domain; ABC transporter substrate-binding protein 649463..650392 Bifidobacterium animalis subsp. lactis Bl-04 8008516 YP_002967986.1 CDS Balac_0549 NC_012814.1 650607 651542 D COG0834 ABC-type amino acid transport/signaltransduction systems, periplasmic component/domain; ABC transporter substrate-binding protein 650607..651542 Bifidobacterium animalis subsp. lactis Bl-04 8008517 YP_002967987.1 CDS Balac_0550 NC_012814.1 651739 652725 D COG0765 ABC-type amino acid transport system, permease component; ABC transporter permease 651739..652725 Bifidobacterium animalis subsp. lactis Bl-04 8008518 YP_002967988.1 CDS Balac_0551 NC_012814.1 652753 653607 D COG1126 ABC-type polar amino acid transport system, ATPase component; ABC transporter ATP-binding protein 652753..653607 Bifidobacterium animalis subsp. lactis Bl-04 8008519 YP_002967989.1 CDS Balac_0552 NC_012814.1 654082 655017 R hypothetical protein complement(654082..655017) Bifidobacterium animalis subsp. lactis Bl-04 8008520 YP_002967990.1 CDS Balac_0553 NC_012814.1 656514 657200 R COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; two-component system response regulator complement(656514..657200) Bifidobacterium animalis subsp. lactis Bl-04 8008521 YP_002967991.1 CDS Balac_0554 NC_012814.1 657536 659362 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 657536..659362 Bifidobacterium animalis subsp. lactis Bl-04 8008522 YP_002967992.1 CDS Balac_0555 NC_012814.1 659380 660108 D COG0564 Pseudouridylate synthases, 23SRNA-specific; 23S RNA-specific pseudouridylate synthase 659380..660108 Bifidobacterium animalis subsp. lactis Bl-04 8008523 YP_002967993.1 CDS Balac_0556 NC_012814.1 660146 660547 D hypothetical protein 660146..660547 Bifidobacterium animalis subsp. lactis Bl-04 8008524 YP_002967994.1 CDS Balac_0557 NC_012814.1 660554 661312 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(660554..661312) Bifidobacterium animalis subsp. lactis Bl-04 8008525 YP_002967995.1 CDS Balac_0558 NC_012814.1 661482 663233 D COG0747 ABC-type dipeptide transport system, periplasmic component; dipeptide ABC transporter periplasmic component 661482..663233 Bifidobacterium animalis subsp. lactis Bl-04 8008526 YP_002967996.1 CDS Balac_0559 NC_012814.1 663273 664235 D COG0601 ABC-type dipeptide/oligopeptide/nickeltransport systems, permease components; peptide ABC transporter permease 663273..664235 Bifidobacterium animalis subsp. lactis Bl-04 8008527 YP_002967997.1 CDS Balac_0560 NC_012814.1 664228 665112 D COG1173 ABC-type dipeptide/oligopeptide/nickeltransport systems, permease components; peptide ABC transporter permease 664228..665112 Bifidobacterium animalis subsp. lactis Bl-04 8008528 YP_002967998.1 CDS Balac_0561 NC_012814.1 665109 665906 D COG4172 ABC-type uncharacterized transport system, duplicated ATPase component; peptide ABC transporter ATP-binding protein 665109..665906 Bifidobacterium animalis subsp. lactis Bl-04 8008529 YP_002967999.1 CDS Balac_0562 NC_012814.1 665899 666687 D COG1123 ATPase components of various ABC-typetransport systems, contain duplicated ATPase; oligopeptide ABC transporter ATPase 665899..666687 Bifidobacterium animalis subsp. lactis Bl-04 8008530 YP_002968000.1 CDS Balac_0563 NC_012814.1 666777 667952 R catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase complement(666777..667952) Bifidobacterium animalis subsp. lactis Bl-04 8008531 YP_002968001.1 CDS Balac_0564 NC_012814.1 668029 669048 R COG0031 Cysteine synthase; cystathionine beta-synthase complement(668029..669048) Bifidobacterium animalis subsp. lactis Bl-04 8008532 YP_002968002.1 CDS Balac_0565 NC_012814.1 669434 671392 R COG0514 Superfamily II DNA helicase; ATP-dependent DNA helicase RecQ complement(669434..671392) Bifidobacterium animalis subsp. lactis Bl-04 8008533 YP_002968003.1 CDS Balac_0566 NC_012814.1 671694 672614 D COG2852 Uncharacterized protein conserved in bacteria; hypothetical protein 671694..672614 Bifidobacterium animalis subsp. lactis Bl-04 8008534 YP_002968004.1 CDS Balac_0567 NC_012814.1 672787 673344 R COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; hypothetical protein complement(672787..673344) Bifidobacterium animalis subsp. lactis Bl-04 8008535 YP_002968005.1 CDS Balac_0568 NC_012814.1 673625 673753 D hypothetical protein 673625..673753 Bifidobacterium animalis subsp. lactis Bl-04 8008536 YP_002968006.1 CDS Balac_0569 NC_012814.1 673885 674088 R hypothetical protein complement(673885..674088) Bifidobacterium animalis subsp. lactis Bl-04 8008537 YP_002968007.1 CDS Balac_0570 NC_012814.1 674623 674943 D hypothetical protein 674623..674943 Bifidobacterium animalis subsp. lactis Bl-04 8008538 YP_002968008.1 CDS Balac_0571 NC_012814.1 675085 675426 D hypothetical protein 675085..675426 Bifidobacterium animalis subsp. lactis Bl-04 8008539 YP_002968009.1 CDS Balac_0572 NC_012814.1 675450 675833 R hypothetical protein complement(675450..675833) Bifidobacterium animalis subsp. lactis Bl-04 8008540 YP_002968010.1 CDS Balac_0573 NC_012814.1 676003 676404 D COG0494 NTP pyrophosphohydrolases includingoxidative damage repair enzymes; putative pyrophosphohydrolase 676003..676404 Bifidobacterium animalis subsp. lactis Bl-04 8008541 YP_002968011.1 CDS Balac_0574 NC_012814.1 676457 679582 D COG3886 Predicted HKD family nuclease; superfamily II DNA/RNA helicase 676457..679582 Bifidobacterium animalis subsp. lactis Bl-04 8008542 YP_002968012.1 CDS Balac_0575 NC_012814.1 680207 680563 D COG3177 Uncharacterized conserved protein; hypothetical protein 680207..680563 Bifidobacterium animalis subsp. lactis Bl-04 8008543 YP_002968013.1 CDS Balac_0576 NC_012814.1 680996 682963 D COG1479 Uncharacterized conserved protein; type I restriction-modification system protein 680996..682963 Bifidobacterium animalis subsp. lactis Bl-04 8008544 YP_002968014.1 CDS Balac_0577 NC_012814.1 683202 683714 D COG3600 Uncharacterized phage-associated protein; putative prophage protein 683202..683714 Bifidobacterium animalis subsp. lactis Bl-04 8008545 YP_002968015.1 CDS Balac_0578 NC_012814.1 683732 684226 D COG3654 Prophage maintenance system killer protein; hypothetical protein 683732..684226 Bifidobacterium animalis subsp. lactis Bl-04 8008546 YP_002968016.1 CDS Balac_0579 NC_012814.1 684223 684702 R COG1247 Sortase and related acyltransferases; hypothetical protein complement(684223..684702) Bifidobacterium animalis subsp. lactis Bl-04 8008547 YP_002968017.1 CDS Balac_0580 NC_012814.1 684769 685566 R COG3752 Predicted membrane protein; hypothetical protein complement(684769..685566) Bifidobacterium animalis subsp. lactis Bl-04 8008548 YP_002968018.1 CDS Balac_0581 NC_012814.1 685674 686687 R COG0371 Glycerol dehydrogenase and related enzymes; glycerol dehydrogenase complement(685674..686687) Bifidobacterium animalis subsp. lactis Bl-04 8008549 YP_002968019.1 CDS Balac_0582 NC_012814.1 687068 687568 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 687068..687568 Bifidobacterium animalis subsp. lactis Bl-04 8008550 YP_002968020.1 CDS Balac_0583 NC_012814.1 687681 688205 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; Histone acetyltransferase 687681..688205 Bifidobacterium animalis subsp. lactis Bl-04 8008551 YP_002968021.1 CDS Balac_0584 NC_012814.1 688281 689648 D COG0787 Alanine racemase; alanine racemase 688281..689648 Bifidobacterium animalis subsp. lactis Bl-04 8008552 YP_002968022.1 CDS dnaG NC_012814.1 689758 691839 D synthesizes RNA primers at the replication forks; DNA primase 689758..691839 Bifidobacterium animalis subsp. lactis Bl-04 8008553 YP_002968023.1 CDS Balac_0586 NC_012814.1 692054 693247 D COG0471 Di- and tricarboxylate transporters; transport protein 692054..693247 Bifidobacterium animalis subsp. lactis Bl-04 8008554 YP_002968024.1 CDS Balac_0588 NC_012814.1 693549 695396 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(693549..695396) Bifidobacterium animalis subsp. lactis Bl-04 8009581 YP_002968025.1 CDS Balac_0589 NC_012814.1 695656 696153 D COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR mutase); phosphoribosylaminoimidazole carboxylasecatalytic subunit 695656..696153 Bifidobacterium animalis subsp. lactis Bl-04 8008556 YP_002968026.1 CDS Balac_0590 NC_012814.1 696137 697288 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 696137..697288 Bifidobacterium animalis subsp. lactis Bl-04 8008557 YP_002968027.1 CDS Balac_0591 NC_012814.1 697329 697730 D COG0735 Fe2+/Zn2+ uptake regulation proteins; metal uptake regulator ferric uptake regulator protein 697329..697730 Bifidobacterium animalis subsp. lactis Bl-04 8008558 YP_002968028.1 CDS Balac_0592 NC_012814.1 697831 700599 R COG2898 Uncharacterized conserved protein; hypothetical protein complement(697831..700599) Bifidobacterium animalis subsp. lactis Bl-04 8008559 YP_002968029.1 CDS Balac_0593 NC_012814.1 700596 701969 R COG0627 Predicted esterase; putative esterase complement(700596..701969) Bifidobacterium animalis subsp. lactis Bl-04 8008560 YP_002968030.1 CDS Balac_0594 NC_012814.1 702162 703424 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(702162..703424) Bifidobacterium animalis subsp. lactis Bl-04 8008561 YP_002968031.1 CDS Balac_0595 NC_012814.1 703472 704506 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(703472..704506) Bifidobacterium animalis subsp. lactis Bl-04 8008562 YP_002968032.1 CDS Balac_0596 NC_012814.1 704583 706139 R COG0034 Glutamine phosphoribosylpyrophosphateamidotransferase; amidophosphoribosyltransferase complement(704583..706139) Bifidobacterium animalis subsp. lactis Bl-04 8008563 YP_002968033.1 CDS Balac_0597 NC_012814.1 706392 707870 D COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA-repair protein 706392..707870 Bifidobacterium animalis subsp. lactis Bl-04 8008564 YP_002968034.1 CDS Balac_0598 NC_012814.1 707867 708280 D hypothetical protein 707867..708280 Bifidobacterium animalis subsp. lactis Bl-04 8008565 YP_002968035.1 CDS Balac_0599 NC_012814.1 708287 709570 D COG3597 Uncharacterized protein/domain associated with GTPases; GTPase protein 708287..709570 Bifidobacterium animalis subsp. lactis Bl-04 8008566 YP_002968036.1 CDS Balac_0600 NC_012814.1 709733 710404 D hypothetical protein 709733..710404 Bifidobacterium animalis subsp. lactis Bl-04 8008567 YP_002968037.1 CDS Balac_0601 NC_012814.1 710572 711081 R COG3467 Predicted flavin-nucleotide-binding protein; hypothetical protein complement(710572..711081) Bifidobacterium animalis subsp. lactis Bl-04 8008568 YP_002968038.1 CDS Balac_0602 NC_012814.1 711266 711862 R COG1396 Predicted transcriptional regulators; hypothetical protein complement(711266..711862) Bifidobacterium animalis subsp. lactis Bl-04 8008569 YP_002968039.1 CDS Balac_0603 NC_012814.1 711991 712167 R hypothetical protein complement(711991..712167) Bifidobacterium animalis subsp. lactis Bl-04 8008570 YP_002968040.1 CDS Balac_0604 NC_012814.1 712166 712309 D hypothetical protein 712166..712309 Bifidobacterium animalis subsp. lactis Bl-04 8008571 YP_002968041.1 CDS Balac_0605 NC_012814.1 712413 713951 D hypothetical protein 712413..713951 Bifidobacterium animalis subsp. lactis Bl-04 8008572 YP_002968042.1 CDS Balac_0606 NC_012814.1 713977 714705 D hypothetical protein 713977..714705 Bifidobacterium animalis subsp. lactis Bl-04 8008573 YP_002968043.1 CDS Balac_0607 NC_012814.1 714746 715195 D hypothetical protein 714746..715195 Bifidobacterium animalis subsp. lactis Bl-04 8008574 YP_002968044.1 CDS Balac_0608 NC_012814.1 715269 715853 D hypothetical protein 715269..715853 Bifidobacterium animalis subsp. lactis Bl-04 8008575 YP_002968045.1 CDS Balac_0609 NC_012814.1 715885 717117 D COG4260 Putative virion core protein (lumpy skin disease virus); putative virion core protein 715885..717117 Bifidobacterium animalis subsp. lactis Bl-04 8008576 YP_002968046.1 CDS Balac_0610 NC_012814.1 717419 721153 R COG0046 Phosphoribosylformylglycinamidine (FGAM synthase, synthetase domain); hypothetical protein complement(717419..721153) Bifidobacterium animalis subsp. lactis Bl-04 8008577 YP_002968047.1 CDS Balac_0611 NC_012814.1 721263 722015 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(721263..722015) Bifidobacterium animalis subsp. lactis Bl-04 8008578 YP_002968048.1 CDS purT NC_012814.1 722152 723393 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(722152..723393) Bifidobacterium animalis subsp. lactis Bl-04 8008579 YP_002968049.1 CDS Balac_0613 NC_012814.1 723519 724721 D COG0438 Glycosyltransferase; glycosyltransferase 723519..724721 Bifidobacterium animalis subsp. lactis Bl-04 8008580 YP_002968050.1 CDS Balac_0614 NC_012814.1 724790 725815 R COG2008 Threonine aldolase; low specificity-threonine aldolase complement(724790..725815) Bifidobacterium animalis subsp. lactis Bl-04 8008581 YP_002968051.1 CDS Balac_0616 NC_012814.1 726586 726720 D hypothetical protein 726586..726720 Bifidobacterium animalis subsp. lactis Bl-04 8009582 YP_002968052.2 CDS rpsL NC_012814.1 726996 727367 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 726996..727367 Bifidobacterium animalis subsp. lactis Bl-04 8008583 YP_002968053.1 CDS Balac_0618 NC_012814.1 727373 727843 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 727373..727843 Bifidobacterium animalis subsp. lactis Bl-04 8008584 YP_002968054.1 CDS Balac_0619 NC_012814.1 727877 730006 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 727877..730006 Bifidobacterium animalis subsp. lactis Bl-04 8008585 YP_002968055.1 CDS Balac_0620 NC_012814.1 730184 731383 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 730184..731383 Bifidobacterium animalis subsp. lactis Bl-04 8008586 YP_002968056.1 CDS Balac_0621 NC_012814.1 731665 732339 R hypothetical protein complement(731665..732339) Bifidobacterium animalis subsp. lactis Bl-04 8008587 YP_002968057.1 CDS Balac_0622 NC_012814.1 732480 733049 R COG0492 Thioredoxin reductase; hypothetical protein complement(732480..733049) Bifidobacterium animalis subsp. lactis Bl-04 8008588 YP_002968058.1 CDS Balac_0623 NC_012814.1 733324 733887 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 733324..733887 Bifidobacterium animalis subsp. lactis Bl-04 8008589 YP_002968059.1 CDS Balac_0624 NC_012814.1 733984 734448 D COG0781 Transcription termination factor; transcription termination factor 733984..734448 Bifidobacterium animalis subsp. lactis Bl-04 8008590 YP_002968060.1 CDS Balac_0625 NC_012814.1 734522 735757 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 734522..735757 Bifidobacterium animalis subsp. lactis Bl-04 8008591 YP_002968061.1 CDS Balac_0626 NC_012814.1 735750 739160 D COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); carbamoylphosphate synthase large subunit 735750..739160 Bifidobacterium animalis subsp. lactis Bl-04 8008592 YP_002968062.1 CDS Balac_0627 NC_012814.1 739157 740128 D COG0284 Orotidine-5-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 739157..740128 Bifidobacterium animalis subsp. lactis Bl-04 8008593 YP_002968063.1 CDS gmk NC_012814.1 740125 740754 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 740125..740754 Bifidobacterium animalis subsp. lactis Bl-04 8008594 YP_002968064.1 CDS Balac_0629 NC_012814.1 740851 742686 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(740851..742686) Bifidobacterium animalis subsp. lactis Bl-04 8008595 YP_002968065.1 CDS Balac_0630 NC_012814.1 742883 743167 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 742883..743167 Bifidobacterium animalis subsp. lactis Bl-04 8008596 YP_002968066.1 CDS Balac_0631 NC_012814.1 743348 744574 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 743348..744574 Bifidobacterium animalis subsp. lactis Bl-04 8008597 YP_002968067.1 CDS Balac_0632 NC_012814.1 744694 745977 D COG2230 Cyclopropane fatty acid synthase and related methyltransferases; cyclopropane-fatty-acyl-phospholipid synthase 744694..745977 Bifidobacterium animalis subsp. lactis Bl-04 8008598 YP_002968068.1 CDS Balac_0633 NC_012814.1 746131 748374 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 746131..748374 Bifidobacterium animalis subsp. lactis Bl-04 8008599 YP_002968069.1 CDS Balac_0634 NC_012814.1 748546 749457 D COG0223 Methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 748546..749457 Bifidobacterium animalis subsp. lactis Bl-04 8008600 YP_002968070.1 CDS Balac_0635 NC_012814.1 749557 750258 R COG0560 Phosphoserine phosphatase; phosphoserine phosphatase complement(749557..750258) Bifidobacterium animalis subsp. lactis Bl-04 8008601 YP_002968071.1 CDS Balac_0636 NC_012814.1 750368 750991 D COG0586 Uncharacterized membrane-associated protein; hypothetical protein 750368..750991 Bifidobacterium animalis subsp. lactis Bl-04 8008602 YP_002968072.1 CDS Balac_0637 NC_012814.1 751117 752685 D COG0464 ATPases of the AAA+ class; ATPase AAA 751117..752685 Bifidobacterium animalis subsp. lactis Bl-04 8008603 YP_002968073.1 CDS Balac_0638 NC_012814.1 752768 754372 D proteasome-associated protein 752768..754372 Bifidobacterium animalis subsp. lactis Bl-04 8008604 YP_002968074.1 CDS Balac_0639 NC_012814.1 754492 755385 D COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; inositol monophosphatase 754492..755385 Bifidobacterium animalis subsp. lactis Bl-04 8008605 YP_002968075.1 CDS Balac_0640 NC_012814.1 755474 755689 D hypothetical protein 755474..755689 Bifidobacterium animalis subsp. lactis Bl-04 8008606 YP_002968076.1 CDS Balac_0641 NC_012814.1 755689 757179 D proteasome-associated protein 755689..757179 Bifidobacterium animalis subsp. lactis Bl-04 8008607 YP_002968077.1 CDS Balac_0642 NC_012814.1 757257 757538 R COG0776 Bacterial nucleoid DNA-binding protein; DNA-binding protein HB1 complement(757257..757538) Bifidobacterium animalis subsp. lactis Bl-04 8008608 YP_002968078.1 CDS Balac_0643 NC_012814.1 757705 760209 R COG0392 Predicted integral membrane protein; hypothetical protein complement(757705..760209) Bifidobacterium animalis subsp. lactis Bl-04 8008609 YP_002968079.1 CDS Balac_0644 NC_012814.1 760308 761753 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(760308..761753) Bifidobacterium animalis subsp. lactis Bl-04 8008610 YP_002968080.1 CDS Balac_0645 NC_012814.1 761804 763354 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); hypothetical protein complement(761804..763354) Bifidobacterium animalis subsp. lactis Bl-04 8008611 YP_002968081.1 CDS Balac_0646 NC_012814.1 763363 763641 R hypothetical protein complement(763363..763641) Bifidobacterium animalis subsp. lactis Bl-04 8008612 YP_002968082.1 CDS Balac_0647 NC_012814.1 763772 764371 R cell surface elastin binding protein EbpS complement(763772..764371) Bifidobacterium animalis subsp. lactis Bl-04 8008613 YP_002968083.1 CDS Balac_0648 NC_012814.1 764368 765372 R hypothetical protein complement(764368..765372) Bifidobacterium animalis subsp. lactis Bl-04 8008614 YP_002968084.1 CDS Balac_0649 NC_012814.1 765369 766430 R COG2304 Uncharacterized protein containing a vonWillebrand factor type A (vWA domain); von Willebrand factor A complement(765369..766430) Bifidobacterium animalis subsp. lactis Bl-04 8008615 YP_002968085.1 CDS Balac_0650 NC_012814.1 766427 766939 R hypothetical protein complement(766427..766939) Bifidobacterium animalis subsp. lactis Bl-04 8008616 YP_002968086.1 CDS Balac_0651 NC_012814.1 766940 767905 R COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWAdomain)); hypothetical protein complement(766940..767905) Bifidobacterium animalis subsp. lactis Bl-04 8008617 YP_002968087.1 CDS Balac_0652 NC_012814.1 767902 768858 R COG0714 MoxR-like ATPases; magnesium chelatase family protein complement(767902..768858) Bifidobacterium animalis subsp. lactis Bl-04 8008618 YP_002968088.1 CDS Balac_0653 NC_012814.1 769093 769812 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(769093..769812) Bifidobacterium animalis subsp. lactis Bl-04 8008619 YP_002968089.1 CDS Balac_0654 NC_012814.1 769989 770672 D hypothetical protein 769989..770672 Bifidobacterium animalis subsp. lactis Bl-04 8008620 YP_002968090.1 CDS cspA NC_012814.1 770979 771191 D COG1278 Cold shock proteins; cold-shock DNA-binding domain-containing protein 770979..771191 Bifidobacterium animalis subsp. lactis Bl-04 8008621 YP_002968091.1 CDS groEL NC_012814.1 771407 773020 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 771407..773020 Bifidobacterium animalis subsp. lactis Bl-04 8008622 YP_002968092.1 CDS Balac_0657 NC_012814.1 773160 773453 R hypothetical protein complement(773160..773453) Bifidobacterium animalis subsp. lactis Bl-04 8008623 YP_002968093.1 CDS Balac_0658 NC_012814.1 773531 774538 D hypothetical protein 773531..774538 Bifidobacterium animalis subsp. lactis Bl-04 8008624 YP_002968094.1 CDS Balac_0659 NC_012814.1 774619 775329 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component system response regulator 774619..775329 Bifidobacterium animalis subsp. lactis Bl-04 8008625 YP_002968095.1 CDS Balac_0660 NC_012814.1 775403 777148 D COG0642 Signal transduction histidine kinase; sensor protein 775403..777148 Bifidobacterium animalis subsp. lactis Bl-04 8008626 YP_002968096.1 CDS cspB NC_012814.1 777275 777718 D COG1278 Cold shock proteins; cold shock protein 777275..777718 Bifidobacterium animalis subsp. lactis Bl-04 8008627 YP_002968097.1 CDS Balac_0662 NC_012814.1 777720 778850 D hypothetical protein 777720..778850 Bifidobacterium animalis subsp. lactis Bl-04 8008628 YP_002968098.1 CDS Balac_0663 NC_012814.1 778933 779955 R hypothetical protein complement(778933..779955) Bifidobacterium animalis subsp. lactis Bl-04 8008629 YP_002968099.1 CDS Balac_0664 NC_012814.1 780120 781097 R COG0589 Universal stress protein UspA and related nucleotide-binding proteins; Universal stress protein complement(780120..781097) Bifidobacterium animalis subsp. lactis Bl-04 8008630 YP_002968100.1 CDS clpC NC_012814.1 781404 783956 D COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease ATP-binding subunit 781404..783956 Bifidobacterium animalis subsp. lactis Bl-04 8008631 YP_002968101.1 CDS aspS NC_012814.1 784358 786160 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(784358..786160) Bifidobacterium animalis subsp. lactis Bl-04 8008632 YP_002968102.1 CDS hisS NC_012814.1 786219 787565 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(786219..787565) Bifidobacterium animalis subsp. lactis Bl-04 8008633 YP_002968103.1 CDS Balac_0668 NC_012814.1 787753 789171 D hypothetical protein 787753..789171 Bifidobacterium animalis subsp. lactis Bl-04 8008634 YP_002968104.1 CDS Balac_0669 NC_012814.1 789350 790138 D COG1073 Hydrolases of the alpha/beta superfamily; hypothetical protein 789350..790138 Bifidobacterium animalis subsp. lactis Bl-04 8008635 YP_002968105.1 CDS Balac_0670 NC_012814.1 790307 791092 D COG1126 ABC-type polar amino acid transport system, ATPase component; ATP-binding protein of ABC transporter for glutamate 790307..791092 Bifidobacterium animalis subsp. lactis Bl-04 8008636 YP_002968106.1 CDS Balac_0671 NC_012814.1 791178 792017 D COG0834 ABC-type amino acid transport/signaltransduction systems, periplasmic component/domain; amino acid ABC transporter substrate-binding protein 791178..792017 Bifidobacterium animalis subsp. lactis Bl-04 8008637 YP_002968107.1 CDS Balac_0672 NC_012814.1 792023 792700 D COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter permease 792023..792700 Bifidobacterium animalis subsp. lactis Bl-04 8008638 YP_002968108.1 CDS Balac_0673 NC_012814.1 792704 793795 D COG0765 ABC-type amino acid transport system, permease component; glutamate ABC transporter permease 792704..793795 Bifidobacterium animalis subsp. lactis Bl-04 8008639 YP_002968109.1 CDS Balac_0674 NC_012814.1 793908 794876 D COG2326 Uncharacterized conserved protein; hypothetical protein 793908..794876 Bifidobacterium animalis subsp. lactis Bl-04 8008640 YP_002968110.1 CDS Balac_0675 NC_012814.1 794891 797479 R COG4581 Superfamily II RNA helicase; DEAD box-like helicase complement(794891..797479) Bifidobacterium animalis subsp. lactis Bl-04 8008641 YP_002968111.1 CDS Balac_0676 NC_012814.1 797610 799124 D COG2256 ATPase related to the helicase subunit ofthe Holliday junction resolvase; recombination factor protein RarA 797610..799124 Bifidobacterium animalis subsp. lactis Bl-04 8008642 YP_002968112.1 CDS Balac_0677 NC_012814.1 799066 800568 D COG0477 Permeases of the major facilitator superfamily; efflux-type transporter 799066..800568 Bifidobacterium animalis subsp. lactis Bl-04 8008643 YP_002968113.1 CDS Balac_0678 NC_012814.1 800646 802481 R COG1022 Long-chain acyl-CoA synthetases (AMP-forming); long-chain-fatty-acid--CoA ligase complement(800646..802481) Bifidobacterium animalis subsp. lactis Bl-04 8008644 YP_002968114.1 CDS Balac_0679 NC_012814.1 802762 803841 D COG3328 Transposase and inactivated derivatives; transposase 802762..803841 Bifidobacterium animalis subsp. lactis Bl-04 8008645 YP_002968115.1 CDS Balac_0680 NC_012814.1 803901 804023 D hypothetical protein 803901..804023 Bifidobacterium animalis subsp. lactis Bl-04 8008646 YP_002968116.1 CDS Balac_0681 NC_012814.1 804308 805873 D COG4715 Uncharacterized conserved protein; hypothetical protein 804308..805873 Bifidobacterium animalis subsp. lactis Bl-04 8008647 YP_002968117.1 CDS Balac_0682 NC_012814.1 805979 806635 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 805979..806635 Bifidobacterium animalis subsp. lactis Bl-04 8008648 YP_002968118.1 CDS Balac_0683 NC_012814.1 806652 807020 D COG3824 Uncharacterized protein conserved in bacteria; putative Zn-dependent protease 806652..807020 Bifidobacterium animalis subsp. lactis Bl-04 8008649 YP_002968119.1 CDS Balac_0684 NC_012814.1 807099 807509 R COG3304 Predicted membrane protein; hypothetical protein complement(807099..807509) Bifidobacterium animalis subsp. lactis Bl-04 8008650 YP_002968120.1 CDS Balac_0685 NC_012814.1 807664 808404 D COG0819 Putative transcription activator; transcriptional activator TenA 807664..808404 Bifidobacterium animalis subsp. lactis Bl-04 8008651 YP_002968121.1 CDS Balac_0686 NC_012814.1 808527 808832 R COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein; hypothetical protein complement(808527..808832) Bifidobacterium animalis subsp. lactis Bl-04 8008652 YP_002968122.1 CDS Balac_0687 NC_012814.1 809103 809939 R COG0656 Aldo/keto reductases, related to diketogulonate reductase; morphine 6-dehydrogenase complement(809103..809939) Bifidobacterium animalis subsp. lactis Bl-04 8008653 YP_002968123.1 CDS Balac_0688 NC_012814.1 810300 812597 R COG1122 ABC-type cobalt transport system, ATPase component; cobalt import ATP-binding/permease cbiO complement(810300..812597) Bifidobacterium animalis subsp. lactis Bl-04 8008654 YP_002968124.1 CDS Balac_0689 NC_012814.1 812594 813085 R COG3601 Predicted membrane protein; hypothetical protein complement(812594..813085) Bifidobacterium animalis subsp. lactis Bl-04 8008655 YP_002968125.1 CDS Balac_0690 NC_012814.1 813631 814401 D COG1940 Transcriptional regulator/sugar kinase; polyphosphate glucokinase 813631..814401 Bifidobacterium animalis subsp. lactis Bl-04 8008656 YP_002968126.1 CDS Balac_0691 NC_012814.1 814581 815666 D COG0436 Aspartate/tyrosine/aromatic aminotransferase; aminotransferase 814581..815666 Bifidobacterium animalis subsp. lactis Bl-04 8008657 YP_002968127.1 CDS Balac_0692 NC_012814.1 815645 816460 R COG1122 ABC-type cobalt transport system, ATPase component; ABC transporter ATP-binding protein complement(815645..816460) Bifidobacterium animalis subsp. lactis Bl-04 8008658 YP_002968128.1 CDS Balac_0693 NC_012814.1 816530 818743 R hypothetical protein complement(816530..818743) Bifidobacterium animalis subsp. lactis Bl-04 8008659 YP_002968129.1 CDS Balac_0694 NC_012814.1 818826 822155 D hypothetical protein 818826..822155 Bifidobacterium animalis subsp. lactis Bl-04 8008660 YP_002968130.1 CDS Balac_0695 NC_012814.1 822269 824860 D COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); LigA 822269..824860 Bifidobacterium animalis subsp. lactis Bl-04 8008661 YP_002968131.1 CDS Balac_0696 NC_012814.1 824930 826042 R COG0489 ATPases involved in chromosome partitioning; hypothetical protein complement(824930..826042) Bifidobacterium animalis subsp. lactis Bl-04 8008662 YP_002968132.1 CDS Balac_0697 NC_012814.1 826173 826781 R COG4721 Predicted membrane protein; hypothetical protein complement(826173..826781) Bifidobacterium animalis subsp. lactis Bl-04 8008663 YP_002968133.1 CDS Balac_0698 NC_012814.1 827019 828455 R COG0174 Glutamine synthetase; glutamine synthetase 1 complement(827019..828455) Bifidobacterium animalis subsp. lactis Bl-04 8008664 YP_002968134.1 CDS Balac_0699 NC_012814.1 828739 829485 R COG0532 Translation initiation factor 2 (IF-2; GTPase); hypothetical protein complement(828739..829485) Bifidobacterium animalis subsp. lactis Bl-04 8008665 YP_002968135.1 CDS Balac_0700 NC_012814.1 829626 831107 R COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3 component, and related enzymes); dihydrolipoamide dehydrogenase complement(829626..831107) Bifidobacterium animalis subsp. lactis Bl-04 8008666 YP_002968136.1 CDS Balac_0701 NC_012814.1 831328 831936 R hypothetical protein complement(831328..831936) Bifidobacterium animalis subsp. lactis Bl-04 8008667 YP_002968137.1 CDS Balac_0702 NC_012814.1 832047 833414 D COG0624 Acetylornithinedeacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; hypothetical protein 832047..833414 Bifidobacterium animalis subsp. lactis Bl-04 8008668 YP_002968138.1 CDS Balac_0703 NC_012814.1 833653 834774 D COG4585 Signal transduction histidine kinase; signal transduction histidine kinase 833653..834774 Bifidobacterium animalis subsp. lactis Bl-04 8008669 YP_002968139.1 CDS Balac_0704 NC_012814.1 834793 835233 R hypothetical protein complement(834793..835233) Bifidobacterium animalis subsp. lactis Bl-04 8008670 YP_002968140.1 CDS Balac_0705 NC_012814.1 835339 835581 D hypothetical protein 835339..835581 Bifidobacterium animalis subsp. lactis Bl-04 8008671 YP_002968141.1 CDS Balac_0706 NC_012814.1 835977 836831 D COG3409 Putative peptidoglycan-binding domain-containing protein; hypothetical protein 835977..836831 Bifidobacterium animalis subsp. lactis Bl-04 8008672 YP_002968142.1 CDS Balac_0707 NC_012814.1 836812 836928 D hypothetical protein 836812..836928 Bifidobacterium animalis subsp. lactis Bl-04 8008673 YP_002968143.1 CDS Balac_0708 NC_012814.1 837273 838478 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter ATP-binding protein 837273..838478 Bifidobacterium animalis subsp. lactis Bl-04 8008674 YP_002968144.1 CDS Balac_0709 NC_012814.1 838514 838657 D hypothetical protein 838514..838657 Bifidobacterium animalis subsp. lactis Bl-04 8008675 YP_002968145.1 CDS Balac_0710 NC_012814.1 838893 839513 D COG4721 Predicted membrane protein; hypothetical protein 838893..839513 Bifidobacterium animalis subsp. lactis Bl-04 8008676 YP_002968146.1 CDS Balac_0711 NC_012814.1 839554 842109 D COG1122 ABC-type cobalt transport system, ATPase component; ABC transporter ATP-binding protein 839554..842109 Bifidobacterium animalis subsp. lactis Bl-04 8008677 YP_002968147.1 CDS Balac_0712 NC_012814.1 842192 842911 R COG1136 ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter complement(842192..842911) Bifidobacterium animalis subsp. lactis Bl-04 8008678 YP_002968148.1 CDS Balac_0713 NC_012814.1 842949 844286 R COG0577 ABC-type antimicrobial peptide transport system, permease component; hypothetical protein complement(842949..844286) Bifidobacterium animalis subsp. lactis Bl-04 8008679 YP_002968149.1 CDS Balac_0714 NC_012814.1 844383 844643 R transporter complement(844383..844643) Bifidobacterium animalis subsp. lactis Bl-04 8008680 YP_002968150.1 CDS Balac_0715 NC_012814.1 844771 845676 D COG0566 rRNA methylases; rRNA methylase 844771..845676 Bifidobacterium animalis subsp. lactis Bl-04 8008681 YP_002968151.1 CDS pheS NC_012814.1 845755 846822 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 845755..846822 Bifidobacterium animalis subsp. lactis Bl-04 8008682 YP_002968152.1 CDS pheT NC_012814.1 846842 849433 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 846842..849433 Bifidobacterium animalis subsp. lactis Bl-04 8008683 YP_002968153.1 CDS Balac_0718 NC_012814.1 849473 850261 D hypothetical protein 849473..850261 Bifidobacterium animalis subsp. lactis Bl-04 8008684 YP_002968154.1 CDS argC NC_012814.1 850390 851484 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 850390..851484 Bifidobacterium animalis subsp. lactis Bl-04 8008685 YP_002968155.1 CDS argJ NC_012814.1 851481 852653 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 851481..852653 Bifidobacterium animalis subsp. lactis Bl-04 8008686 YP_002968156.1 CDS Balac_0721 NC_012814.1 852663 853619 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 852663..853619 Bifidobacterium animalis subsp. lactis Bl-04 8008687 YP_002968157.1 CDS argD NC_012814.1 853609 854862 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 853609..854862 Bifidobacterium animalis subsp. lactis Bl-04 8008688 YP_002968158.1 CDS Balac_0723 NC_012814.1 854946 855908 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 854946..855908 Bifidobacterium animalis subsp. lactis Bl-04 8008689 YP_002968159.1 CDS Balac_0724 NC_012814.1 855928 856473 D COG1438 Arginine repressor; arginine repressor ArgR 855928..856473 Bifidobacterium animalis subsp. lactis Bl-04 8008690 YP_002968160.1 CDS Balac_0725 NC_012814.1 856553 857791 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 856553..857791 Bifidobacterium animalis subsp. lactis Bl-04 8008691 YP_002968161.1 CDS Balac_0726 NC_012814.1 857906 859402 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 857906..859402 Bifidobacterium animalis subsp. lactis Bl-04 8008692 YP_002968162.1 CDS Balac_0727 NC_012814.1 859486 860271 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); L-2,3-butanediol dehydrogenase/acetoinreductase complement(859486..860271) Bifidobacterium animalis subsp. lactis Bl-04 8008693 YP_002968163.1 CDS Balac_0728 NC_012814.1 860324 860911 D COG1418 Predicted HD superfamily hydrolase; hypothetical protein 860324..860911 Bifidobacterium animalis subsp. lactis Bl-04 8008694 YP_002968164.1 CDS Balac_0729 NC_012814.1 861000 862322 D COG0162 Tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase 861000..862322 Bifidobacterium animalis subsp. lactis Bl-04 8008695 YP_002968165.1 CDS Balac_0730 NC_012814.1 862458 864125 D hypothetical protein 862458..864125 Bifidobacterium animalis subsp. lactis Bl-04 8008696 YP_002968166.1 CDS Balac_0731 NC_012814.1 864122 865162 D COG0647 Predicted sugar phosphatases of the HAD superfamily; hypothetical protein 864122..865162 Bifidobacterium animalis subsp. lactis Bl-04 8008697 YP_002968167.1 CDS Balac_0732 NC_012814.1 865222 865980 D COG1189 Predicted rRNA methylase; hemolysin-like protein 865222..865980 Bifidobacterium animalis subsp. lactis Bl-04 8008698 YP_002968168.1 CDS Balac_0733 NC_012814.1 866238 867701 D COG0168 Trk-type K+ transport systems, membrane components; hypothetical protein 866238..867701 Bifidobacterium animalis subsp. lactis Bl-04 8008699 YP_002968169.1 CDS Balac_0734 NC_012814.1 867792 868442 D COG0569 K+ transport systems, NAD-binding component; hypothetical protein 867792..868442 Bifidobacterium animalis subsp. lactis Bl-04 8008700 YP_002968170.1 CDS ppnK NC_012814.1 868532 869506 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 868532..869506 Bifidobacterium animalis subsp. lactis Bl-04 8008701 YP_002968171.1 CDS recN NC_012814.1 869631 871361 D COG0497 ATPase involved in DNA repair; DNA repair protein RecN 869631..871361 Bifidobacterium animalis subsp. lactis Bl-04 8008702 YP_002968172.1 CDS Balac_0737 NC_012814.1 871373 872056 D COG0637 Predicted phosphatase/phosphohexomutase; hydrolyase 871373..872056 Bifidobacterium animalis subsp. lactis Bl-04 8008703 YP_002968173.1 CDS Balac_0738 NC_012814.1 872150 873637 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(872150..873637) Bifidobacterium animalis subsp. lactis Bl-04 8008704 YP_002968174.1 CDS proA NC_012814.1 873774 875087 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 873774..875087 Bifidobacterium animalis subsp. lactis Bl-04 8008705 YP_002968175.1 CDS Balac_0740 NC_012814.1 875105 875722 D hypothetical protein 875105..875722 Bifidobacterium animalis subsp. lactis Bl-04 8008706 YP_002968176.1 CDS nadD NC_012814.1 875719 876423 D transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 875719..876423 Bifidobacterium animalis subsp. lactis Bl-04 8008707 YP_002968177.1 CDS Balac_0742 NC_012814.1 876515 877534 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 876515..877534 Bifidobacterium animalis subsp. lactis Bl-04 8008708 YP_002968178.1 CDS glmU NC_012814.1 877758 879140 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 877758..879140 Bifidobacterium animalis subsp. lactis Bl-04 8009583 YP_002968179.1 CDS Balac_0745 NC_012814.1 879151 879555 D COG0799 Uncharacterized homolog of plant Iojap protein; hypothetical protein 879151..879555 Bifidobacterium animalis subsp. lactis Bl-04 8008710 YP_002968180.1 CDS Balac_0746 NC_012814.1 879619 880251 D COG0406 Fructose-2,6-bisphosphatase; hypothetical protein 879619..880251 Bifidobacterium animalis subsp. lactis Bl-04 8008711 YP_002968181.1 CDS Balac_0747 NC_012814.1 880351 881280 D hypothetical protein 880351..881280 Bifidobacterium animalis subsp. lactis Bl-04 8008712 YP_002968182.1 CDS Balac_0750 NC_012814.1 881751 882155 D COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5-phosphate oxidase; hypothetical protein 881751..882155 Bifidobacterium animalis subsp. lactis Bl-04 8009585 YP_002968183.1 CDS Balac_0751 NC_012814.1 882254 883078 D COG0406 Fructose-2,6-bisphosphatase; phosphoglycerate mutase 882254..883078 Bifidobacterium animalis subsp. lactis Bl-04 8008714 YP_002968184.1 CDS Balac_0752 NC_012814.1 883219 884169 D COG0598 Mg2+ and Co2+ transporters; Mg2+ and Co2+ transporter 883219..884169 Bifidobacterium animalis subsp. lactis Bl-04 8008715 YP_002968185.1 CDS Balac_0753 NC_012814.1 884298 885068 D COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; solute binding protein of ABC transporter system 884298..885068 Bifidobacterium animalis subsp. lactis Bl-04 8008716 YP_002968186.1 CDS leuS NC_012814.1 885229 888120 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 885229..888120 Bifidobacterium animalis subsp. lactis Bl-04 8008717 YP_002968187.1 CDS Balac_0755 NC_012814.1 888232 889008 D COG1555 DNA uptake protein and related DNA-binding proteins; putative DNA-binding protein 888232..889008 Bifidobacterium animalis subsp. lactis Bl-04 8008718 YP_002968188.1 CDS Balac_0756 NC_012814.1 888990 890756 D COG0658 Predicted membrane metal-binding protein; ComA-like putative transmembrane protein 888990..890756 Bifidobacterium animalis subsp. lactis Bl-04 8008719 YP_002968189.1 CDS Balac_0757 NC_012814.1 890822 891784 D COG1466 DNA polymerase III, delta subunit; hypothetical protein 890822..891784 Bifidobacterium animalis subsp. lactis Bl-04 8008720 YP_002968190.1 CDS Balac_0758 NC_012814.1 891781 892410 D COG0802 Predicted ATPase or kinase; putative ATPase 891781..892410 Bifidobacterium animalis subsp. lactis Bl-04 8008721 YP_002968191.1 CDS Balac_0759 NC_012814.1 892486 893328 D COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; hypothetical protein 892486..893328 Bifidobacterium animalis subsp. lactis Bl-04 8008722 YP_002968192.1 CDS Balac_0760 NC_012814.1 893325 893822 D COG0456 Acetyltransferases; Acetyltransferase 893325..893822 Bifidobacterium animalis subsp. lactis Bl-04 8008723 YP_002968193.1 CDS Balac_0761 NC_012814.1 893863 894906 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 893863..894906 Bifidobacterium animalis subsp. lactis Bl-04 8008724 YP_002968194.1 CDS Balac_0763 NC_012814.1 895139 895645 R hypothetical protein complement(895139..895645) Bifidobacterium animalis subsp. lactis Bl-04 8009586 YP_002968195.1 CDS Balac_0765 NC_012814.1 895975 896352 D hypothetical protein 895975..896352 Bifidobacterium animalis subsp. lactis Bl-04 8009587 YP_002968196.1 CDS Balac_0766 NC_012814.1 896587 897165 D COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 896587..897165 Bifidobacterium animalis subsp. lactis Bl-04 8008727 YP_002968197.1 CDS Balac_0767 NC_012814.1 897186 898700 R COG4213 ABC-type xylose transport system, periplasmic component; hypothetical protein complement(897186..898700) Bifidobacterium animalis subsp. lactis Bl-04 8008728 YP_002968198.1 CDS Balac_0768 NC_012814.1 898816 900039 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(898816..900039) Bifidobacterium animalis subsp. lactis Bl-04 8008729 YP_002968199.1 CDS Balac_0769 NC_012814.1 900166 901287 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 900166..901287 Bifidobacterium animalis subsp. lactis Bl-04 8008730 YP_002968200.1 CDS Balac_0770 NC_012814.1 901503 902084 D hypothetical protein 901503..902084 Bifidobacterium animalis subsp. lactis Bl-04 8008731 YP_002968201.1 CDS Balac_0771 NC_012814.1 902133 904154 D COG1022 Long-chain acyl-CoA synthetases (AMP-forming); long-chain-fatty acid CoA ligase 902133..904154 Bifidobacterium animalis subsp. lactis Bl-04 8008732 YP_002968202.1 CDS Balac_0772 NC_012814.1 904160 904642 D COG0242 N-formylmethionyl-tRNA deformylase; N-formylmethionyl-tRNA deformylase 904160..904642 Bifidobacterium animalis subsp. lactis Bl-04 8008733 YP_002968203.1 CDS rpsB NC_012814.1 904919 905830 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 904919..905830 Bifidobacterium animalis subsp. lactis Bl-04 8008734 YP_002968204.1 CDS tsf NC_012814.1 905940 906797 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 905940..906797 Bifidobacterium animalis subsp. lactis Bl-04 8008735 YP_002968205.1 CDS pyrH NC_012814.1 906941 907687 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 906941..907687 Bifidobacterium animalis subsp. lactis Bl-04 8008736 YP_002968206.1 CDS frr NC_012814.1 907772 908293 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 907772..908293 Bifidobacterium animalis subsp. lactis Bl-04 8008737 YP_002968207.1 CDS Balac_0777 NC_012814.1 908386 909354 D COG0575 CDP-diglyceride synthetase; CDP-diglyceride synthetase 908386..909354 Bifidobacterium animalis subsp. lactis Bl-04 8008738 YP_002968208.1 CDS Balac_0778 NC_012814.1 909368 910564 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 909368..910564 Bifidobacterium animalis subsp. lactis Bl-04 8008739 YP_002968209.1 CDS Balac_0779 NC_012814.1 910684 911253 D COG1309 Transcriptional regulator; hypothetical protein 910684..911253 Bifidobacterium animalis subsp. lactis Bl-04 8008740 YP_002968210.1 CDS Balac_0780 NC_012814.1 911354 911989 D COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter ATPase 911354..911989 Bifidobacterium animalis subsp. lactis Bl-04 8008741 YP_002968211.1 CDS Balac_0781 NC_012814.1 911997 912734 D COG0842 ABC-type multidrug transport system, permease component; hypothetical protein 911997..912734 Bifidobacterium animalis subsp. lactis Bl-04 8008742 YP_002968212.1 CDS Balac_0782 NC_012814.1 912876 913646 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 912876..913646 Bifidobacterium animalis subsp. lactis Bl-04 8008743 YP_002968213.1 CDS hisI NC_012814.1 913718 914131 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 913718..914131 Bifidobacterium animalis subsp. lactis Bl-04 8008744 YP_002968214.1 CDS Balac_0784 NC_012814.1 914128 915693 D COG0147 Anthranilate/para-aminobenzoate synthases component I; Anthranilate/para-aminobenzoate synthases component I 914128..915693 Bifidobacterium animalis subsp. lactis Bl-04 8008745 YP_002968215.1 CDS Balac_0785 NC_012814.1 915773 916363 R COG1573 Uracil-DNA glycosylase; uracil-DNA glycosylase complement(915773..916363) Bifidobacterium animalis subsp. lactis Bl-04 8008746 YP_002968216.1 CDS Balac_0786 NC_012814.1 916543 916692 R hypothetical protein complement(916543..916692) Bifidobacterium animalis subsp. lactis Bl-04 8008747 YP_002968217.1 CDS Balac_0787 NC_012814.1 916899 917204 R hypothetical protein complement(916899..917204) Bifidobacterium animalis subsp. lactis Bl-04 8008748 YP_002968218.1 CDS Balac_0788 NC_012814.1 917455 919539 D catalyzes ring closure to form indole-3-glycerol phosphate; catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta 917455..919539 Bifidobacterium animalis subsp. lactis Bl-04 8008749 YP_002968219.1 CDS trpA NC_012814.1 919565 920434 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 919565..920434 Bifidobacterium animalis subsp. lactis Bl-04 8008750 YP_002968220.1 CDS Balac_0790 NC_012814.1 920531 921469 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 920531..921469 Bifidobacterium animalis subsp. lactis Bl-04 8008751 YP_002968221.1 CDS Balac_0791 NC_012814.1 921524 922189 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 921524..922189 Bifidobacterium animalis subsp. lactis Bl-04 8008752 YP_002968222.1 CDS hisE NC_012814.1 922286 922549 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 922286..922549 Bifidobacterium animalis subsp. lactis Bl-04 8008753 YP_002968223.1 CDS hisG NC_012814.1 922613 923464 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 922613..923464 Bifidobacterium animalis subsp. lactis Bl-04 8008754 YP_002968224.1 CDS Balac_0794 NC_012814.1 923485 924111 D COG0558 Phosphatidylglycerophosphate synthase; CDP-diacylglycerol--glycerol-3- phosphate3-phosphatidyl-transferase 923485..924111 Bifidobacterium animalis subsp. lactis Bl-04 8008755 YP_002968225.1 CDS Balac_0795 NC_012814.1 924271 925113 D COG3879 Uncharacterized protein conserved in bacteria; hypothetical protein 924271..925113 Bifidobacterium animalis subsp. lactis Bl-04 8008756 YP_002968226.1 CDS Balac_0796 NC_012814.1 925113 925445 D COG3856 Uncharacterized conserved protein (small basic protein); hypothetical protein 925113..925445 Bifidobacterium animalis subsp. lactis Bl-04 8008757 YP_002968227.1 CDS Balac_0797 NC_012814.1 925448 926326 D COG3879 Uncharacterized protein conserved in bacteria; hypothetical protein 925448..926326 Bifidobacterium animalis subsp. lactis Bl-04 8008758 YP_002968228.1 CDS Balac_0798 NC_012814.1 926333 926773 D COG1716 FOG: FHA domain; hypothetical protein 926333..926773 Bifidobacterium animalis subsp. lactis Bl-04 8008759 YP_002968229.1 CDS Balac_0799 NC_012814.1 926796 927527 D COG0789 Predicted transcriptional regulators; SoxR-type transcriptional regulator 926796..927527 Bifidobacterium animalis subsp. lactis Bl-04 8008760 YP_002968230.1 CDS Balac_0800 NC_012814.1 927612 927965 D hypothetical protein 927612..927965 Bifidobacterium animalis subsp. lactis Bl-04 8008761 YP_002968231.1 CDS Balac_0801 NC_012814.1 927962 928339 D COG0239 Integral membrane protein possibly involved in chromosome condensation; CrcB protein 927962..928339 Bifidobacterium animalis subsp. lactis Bl-04 8008762 YP_002968232.1 CDS Balac_0802 NC_012814.1 928351 928728 D COG0239 Integral membrane protein possibly involved in chromosome condensation; hypothetical protein 928351..928728 Bifidobacterium animalis subsp. lactis Bl-04 8008763 YP_002968233.1 CDS Balac_0803 NC_012814.1 929281 930000 R COG0546 Predicted phosphatases; hydrolase or phosphatase complement(929281..930000) Bifidobacterium animalis subsp. lactis Bl-04 8008764 YP_002968234.1 CDS Balac_0804 NC_012814.1 930088 930435 R hypothetical protein complement(930088..930435) Bifidobacterium animalis subsp. lactis Bl-04 8008765 YP_002968235.1 CDS Balac_0805 NC_012814.1 930540 933029 R COG4581 Superfamily II RNA helicase; helicase complement(930540..933029) Bifidobacterium animalis subsp. lactis Bl-04 8008766 YP_002968236.1 CDS Balac_0806 NC_012814.1 933146 933463 R hypothetical protein complement(933146..933463) Bifidobacterium animalis subsp. lactis Bl-04 8008767 YP_002968237.1 CDS Balac_0807 NC_012814.1 933553 935490 R COG2378 Predicted transcriptional regulator; hypothetical protein complement(933553..935490) Bifidobacterium animalis subsp. lactis Bl-04 8008768 YP_002968238.1 CDS Balac_0808 NC_012814.1 935627 937054 R COG4284 UDP-glucose pyrophosphorylase; UTP-glucose-1-phosphate uridylyltransferase complement(935627..937054) Bifidobacterium animalis subsp. lactis Bl-04 8008769 YP_002968239.1 CDS Balac_0810 NC_012814.1 937473 939605 R CMK catalyzes the formation of (d)CDP from ATP and (d)CMP; the function of the GTP-binding domain EngA appears to be in synchronizing cellular events by interacting with multiple cellular targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide-binding affinities in the two binding domains; bifunctional cytidylate kinase/GTP-binding protein complement(937473..939605) Bifidobacterium animalis subsp. lactis Bl-04 8009588 YP_002968240.1 CDS Balac_0811 NC_012814.1 939602 940375 R COG1187 16S rRNA uridine-516 pseudo uridylatesynthase and related pseudouridylate synthases; 16S rRNA uridine-516 pseudo uridylate synthase complement(939602..940375) Bifidobacterium animalis subsp. lactis Bl-04 8008771 YP_002968241.1 CDS Balac_0812 NC_012814.1 940531 941553 D COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); membrane channel protein 940531..941553 Bifidobacterium animalis subsp. lactis Bl-04 8008772 YP_002968242.1 CDS Balac_0813 NC_012814.1 941467 941757 R hypothetical protein complement(941467..941757) Bifidobacterium animalis subsp. lactis Bl-04 8008773 YP_002968243.1 CDS purH NC_012814.1 941912 943561 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(941912..943561) Bifidobacterium animalis subsp. lactis Bl-04 8008774 YP_002968244.1 CDS Balac_0815 NC_012814.1 943551 944909 R hypothetical protein complement(943551..944909) Bifidobacterium animalis subsp. lactis Bl-04 8008775 YP_002968245.1 CDS Balac_0816 NC_012814.1 944909 945826 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(944909..945826) Bifidobacterium animalis subsp. lactis Bl-04 8008776 YP_002968246.1 CDS Balac_0817 NC_012814.1 945827 947020 R COG0045 Succinyl-CoA synthetase, beta subunit; Succinyl-CoA synthetase subunit beta complement(945827..947020) Bifidobacterium animalis subsp. lactis Bl-04 8008777 YP_002968247.1 CDS Balac_0818 NC_012814.1 947042 947623 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(947042..947623) Bifidobacterium animalis subsp. lactis Bl-04 8008778 YP_002968248.1 CDS Balac_0819 NC_012814.1 947667 948107 R COG1862 Preprotein translocase subunit YajC; hypothetical protein complement(947667..948107) Bifidobacterium animalis subsp. lactis Bl-04 8008779 YP_002968249.1 CDS ruvB NC_012814.1 948161 949228 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(948161..949228) Bifidobacterium animalis subsp. lactis Bl-04 8008780 YP_002968250.1 CDS Balac_0821 NC_012814.1 949256 949879 R COG0632 Holliday junction resolvasome, DNA-binding subunit; holliday junction ATP-dependent DNA helicase ruvA complement(949256..949879) Bifidobacterium animalis subsp. lactis Bl-04 8008781 YP_002968251.1 CDS ruvC NC_012814.1 949917 950498 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(949917..950498) Bifidobacterium animalis subsp. lactis Bl-04 8008782 YP_002968252.1 CDS Balac_0823 NC_012814.1 950505 951260 R COG0217 Uncharacterized conserved protein; hypothetical protein complement(950505..951260) Bifidobacterium animalis subsp. lactis Bl-04 8008783 YP_002968253.1 CDS Balac_0824 NC_012814.1 951314 952483 R COG0438 Glycosyltransferase; glycosyltransferase complement(951314..952483) Bifidobacterium animalis subsp. lactis Bl-04 8008784 YP_002968254.1 CDS Balac_0825 NC_012814.1 952543 953538 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(952543..953538) Bifidobacterium animalis subsp. lactis Bl-04 8008785 YP_002968255.1 CDS Balac_0826 NC_012814.1 953600 954271 R COG0558 Phosphatidylglycerophosphate synthase; CDP-diacylglycerol--glycerol-3-phosphate3- phosphatidyltransferase complement(953600..954271) Bifidobacterium animalis subsp. lactis Bl-04 8008786 YP_002968256.1 CDS thrS NC_012814.1 954430 956508 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(954430..956508) Bifidobacterium animalis subsp. lactis Bl-04 8008787 YP_002968257.1 CDS Balac_0828 NC_012814.1 956725 957234 R COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein complement(956725..957234) Bifidobacterium animalis subsp. lactis Bl-04 8008788 YP_002968258.1 CDS Balac_0830 NC_012814.1 957629 958150 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; transcriptional regulator 957629..958150 Bifidobacterium animalis subsp. lactis Bl-04 8009589 YP_002968259.1 CDS Balac_0831 NC_012814.1 958196 958375 R hypothetical protein complement(958196..958375) Bifidobacterium animalis subsp. lactis Bl-04 8008790 YP_002968260.1 CDS Balac_0832 NC_012814.1 958423 958785 R hypothetical protein complement(958423..958785) Bifidobacterium animalis subsp. lactis Bl-04 8008791 YP_002968261.1 CDS Balac_0837 NC_012814.1 960042 960842 D hypothetical protein 960042..960842 Bifidobacterium animalis subsp. lactis Bl-04 8009593 YP_002968262.1 CDS Balac_0838 NC_012814.1 960936 961823 R phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase complement(960936..961823) Bifidobacterium animalis subsp. lactis Bl-04 8008793 YP_002968263.1 CDS Balac_0839 NC_012814.1 961997 962791 D COG3001 Fructosamine-3-kinase; hypothetical protein 961997..962791 Bifidobacterium animalis subsp. lactis Bl-04 8008794 YP_002968264.1 CDS dnaJ NC_012814.1 962914 964062 R COG0484 DnaJ-class molecular chaperone withC-terminal Zn finger domain; DnaJ-class molecular chaperone complement(962914..964062) Bifidobacterium animalis subsp. lactis Bl-04 8008795 YP_002968265.1 CDS hrcA NC_012814.1 964131 965231 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(964131..965231) Bifidobacterium animalis subsp. lactis Bl-04 8008796 YP_002968266.1 CDS Balac_0842 NC_012814.1 965448 967544 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 965448..967544 Bifidobacterium animalis subsp. lactis Bl-04 8008797 YP_002968267.1 CDS Balac_0843 NC_012814.1 967640 968746 D catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase 967640..968746 Bifidobacterium animalis subsp. lactis Bl-04 8008798 YP_002968268.1 CDS Balac_0844 NC_012814.1 968834 969499 R COG1357 Uncharacterized low-complexity proteins; hypothetical protein complement(968834..969499) Bifidobacterium animalis subsp. lactis Bl-04 8008799 YP_002968269.1 CDS Balac_0845 NC_012814.1 969483 970682 R COG0436 Aspartate/tyrosine/aromatic aminotransferase; class I and II aminotransferase complement(969483..970682) Bifidobacterium animalis subsp. lactis Bl-04 8008800 YP_002968270.1 CDS Balac_0846 NC_012814.1 970682 971200 R COG1522 Transcriptional regulators; AsnC family transcriptional regulator complement(970682..971200) Bifidobacterium animalis subsp. lactis Bl-04 8008801 YP_002968271.1 CDS Balac_0847 NC_012814.1 971254 972933 R in Corynebacterium glutamicum the aminotransferase can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; this protein contains a helix-turn-helix domain at the N-terminus; bifunctional HTH-domain containing protein/aminotransferase complement(971254..972933) Bifidobacterium animalis subsp. lactis Bl-04 8008802 YP_002968272.1 CDS Balac_0848 NC_012814.1 973044 973874 R COG0561 Predicted hydrolases of the HAD superfamily; hypothetical protein complement(973044..973874) Bifidobacterium animalis subsp. lactis Bl-04 8008803 YP_002968273.1 CDS secG NC_012814.1 973974 974222 R preprotein translocase subunit SecG complement(973974..974222) Bifidobacterium animalis subsp. lactis Bl-04 8008804 YP_002968274.1 CDS tpiA NC_012814.1 974289 975101 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(974289..975101) Bifidobacterium animalis subsp. lactis Bl-04 8008805 YP_002968275.1 CDS pgk NC_012814.1 975195 976400 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(975195..976400) Bifidobacterium animalis subsp. lactis Bl-04 8008806 YP_002968276.1 CDS Balac_0852 NC_012814.1 976522 977484 R COG1481 Uncharacterized protein conserved in bacteria; hypothetical protein complement(976522..977484) Bifidobacterium animalis subsp. lactis Bl-04 8008807 YP_002968277.1 CDS Balac_0853 NC_012814.1 977633 978565 R COG1660 Predicted P-loop-containing kinase; hypothetical protein complement(977633..978565) Bifidobacterium animalis subsp. lactis Bl-04 8008808 YP_002968278.1 CDS Balac_0854 NC_012814.1 978565 979491 R COG0169 Shikimate 5-dehydrogenase; shikimate 5-dehydrogenase complement(978565..979491) Bifidobacterium animalis subsp. lactis Bl-04 8008809 YP_002968279.1 CDS uvrC NC_012814.1 979622 982012 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(979622..982012) Bifidobacterium animalis subsp. lactis Bl-04 8008810 YP_002968280.1 CDS uvrA NC_012814.1 982075 985035 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(982075..985035) Bifidobacterium animalis subsp. lactis Bl-04 8008811 YP_002968281.1 CDS Balac_0857 NC_012814.1 985364 986329 D hypothetical protein 985364..986329 Bifidobacterium animalis subsp. lactis Bl-04 8008812 YP_002968282.1 CDS Balac_0858 NC_012814.1 986415 986942 D COG3663 G:T/U mismatch-specific DNA glycosylase; G:T/U mismatch-specific DNA glycosylase 986415..986942 Bifidobacterium animalis subsp. lactis Bl-04 8008813 YP_002968283.1 CDS Balac_0859 NC_012814.1 986999 987628 D COG0400 Predicted esterase; putative esterase 986999..987628 Bifidobacterium animalis subsp. lactis Bl-04 8008814 YP_002968284.1 CDS Balac_0860 NC_012814.1 987618 989219 D COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 987618..989219 Bifidobacterium animalis subsp. lactis Bl-04 8008815 YP_002968285.1 CDS Balac_0861 NC_012814.1 989328 990398 R COG0053 Predicted Co/Zn/Cd cation transporters; cation transporter complement(989328..990398) Bifidobacterium animalis subsp. lactis Bl-04 8008816 YP_002968286.1 CDS Balac_0862 NC_012814.1 990449 991222 R COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit; putative carboxymuconolactone decarboxylase complement(990449..991222) Bifidobacterium animalis subsp. lactis Bl-04 8008817 YP_002968287.1 CDS bsh NC_012814.1 991343 992287 R COG3049 Penicillin V acylase and related amidases; bile salt hydrolase, choloylglycine hydrolase complement(991343..992287) Bifidobacterium animalis subsp. lactis Bl-04 8008818 YP_002968288.1 CDS Balac_0864 NC_012814.1 992498 994309 D COG0062 Uncharacterized conserved protein; hypothetical protein 992498..994309 Bifidobacterium animalis subsp. lactis Bl-04 8008819 YP_002968289.1 CDS Balac_0865 NC_012814.1 994445 995002 D COG0450 Peroxiredoxin; Peroxiredoxin 994445..995002 Bifidobacterium animalis subsp. lactis Bl-04 8008820 YP_002968290.1 CDS Balac_0866 NC_012814.1 995021 996793 D COG0492 Thioredoxin reductase; thioredoxin reductase-like protein 995021..996793 Bifidobacterium animalis subsp. lactis Bl-04 8008821 YP_002968291.1 CDS Balac_0867 NC_012814.1 996884 997810 R COG0583 Transcriptional regulator; fhu operon transcription regulator complement(996884..997810) Bifidobacterium animalis subsp. lactis Bl-04 8008822 YP_002968292.1 CDS Balac_0868 NC_012814.1 997879 998535 R COG1011 Predicted hydrolase (HAD superfamily); alpha beta hydrolase complement(997879..998535) Bifidobacterium animalis subsp. lactis Bl-04 8008823 YP_002968293.1 CDS Balac_0869 NC_012814.1 998689 999672 D COG2852 Uncharacterized protein conserved in bacteria; hypothetical protein 998689..999672 Bifidobacterium animalis subsp. lactis Bl-04 8008824 YP_002968294.1 CDS Balac_0870 NC_012814.1 1000100 1001008 D COG1397 ADP-ribosylglycohydrolase; hydrolase 1000100..1001008 Bifidobacterium animalis subsp. lactis Bl-04 8008825 YP_002968295.1 CDS Balac_0871 NC_012814.1 1001179 1001523 D COG1733 Predicted transcriptional regulators; transcriptional regulator 1001179..1001523 Bifidobacterium animalis subsp. lactis Bl-04 8008826 YP_002968296.1 CDS Balac_0872 NC_012814.1 1001706 1002239 D hypothetical protein 1001706..1002239 Bifidobacterium animalis subsp. lactis Bl-04 8008827 YP_002968297.1 CDS Balac_0873 NC_012814.1 1002246 1002671 R COG0456 Acetyltransferases; acetyltransferase complement(1002246..1002671) Bifidobacterium animalis subsp. lactis Bl-04 8008828 YP_002968298.1 CDS pyrE NC_012814.1 1003167 1003862 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(1003167..1003862) Bifidobacterium animalis subsp. lactis Bl-04 8008829 YP_002968299.1 CDS Balac_0875 NC_012814.1 1004000 1004983 R COG0167 Dihydroorotate dehydrogenase; Dihydroorotate dehydrogenase complement(1004000..1004983) Bifidobacterium animalis subsp. lactis Bl-04 8008830 YP_002968300.1 CDS Balac_0876 NC_012814.1 1004976 1005815 R COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; dihydroorotate dehydrogenase electron transfer subunit complement(1004976..1005815) Bifidobacterium animalis subsp. lactis Bl-04 8008831 YP_002968301.1 CDS Balac_0877 NC_012814.1 1005883 1006833 R COG0284 Orotidine-5-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase complement(1005883..1006833) Bifidobacterium animalis subsp. lactis Bl-04 8008832 YP_002968302.1 CDS Balac_0878 NC_012814.1 1006839 1008263 R COG0044 Dihydroorotase and related cyclicamidohydrolases; dihydroorotase complement(1006839..1008263) Bifidobacterium animalis subsp. lactis Bl-04 8008833 YP_002968303.1 CDS Balac_0879 NC_012814.1 1008264 1008683 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase complement(1008264..1008683) Bifidobacterium animalis subsp. lactis Bl-04 8008834 YP_002968304.1 CDS pyrB NC_012814.1 1008683 1009642 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase complement(1008683..1009642) Bifidobacterium animalis subsp. lactis Bl-04 8008835 YP_002968305.1 CDS Balac_0881 NC_012814.1 1009772 1010254 R hypothetical protein complement(1009772..1010254) Bifidobacterium animalis subsp. lactis Bl-04 8008836 YP_002968306.1 CDS Balac_0882 NC_012814.1 1010270 1013404 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(1010270..1013404) Bifidobacterium animalis subsp. lactis Bl-04 8008837 YP_002968307.1 CDS Balac_0883 NC_012814.1 1013447 1014283 R COG0685 5,10-methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(1013447..1014283) Bifidobacterium animalis subsp. lactis Bl-04 8008838 YP_002968308.1 CDS Balac_0884 NC_012814.1 1014430 1016733 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase complement(1014430..1016733) Bifidobacterium animalis subsp. lactis Bl-04 8008839 YP_002968309.1 CDS Balac_0885 NC_012814.1 1016880 1017434 R COG2062 Phosphohistidine phosphatase SixA; hypothetical protein complement(1016880..1017434) Bifidobacterium animalis subsp. lactis Bl-04 8008840 YP_002968310.1 CDS Balac_0886 NC_012814.1 1017535 1018593 R COG2519 tRNA (1-methyladenosine methyltransferase and related methyltransferases); hypothetical protein complement(1017535..1018593) Bifidobacterium animalis subsp. lactis Bl-04 8008841 YP_002968311.1 CDS Balac_0887 NC_012814.1 1018691 1019533 R COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA; ABC transporter ATP-binding protein complement(1018691..1019533) Bifidobacterium animalis subsp. lactis Bl-04 8008842 YP_002968312.1 CDS Balac_0888 NC_012814.1 1019607 1020866 R COG0438 Glycosyltransferase; glycosyltransferase complement(1019607..1020866) Bifidobacterium animalis subsp. lactis Bl-04 8008843 YP_002968313.1 CDS Balac_0889 NC_012814.1 1021103 1021588 D COG1225 Peroxiredoxin; thioredoxin peroxidase 1021103..1021588 Bifidobacterium animalis subsp. lactis Bl-04 8008844 YP_002968314.1 CDS Balac_0890 NC_012814.1 1021672 1022130 R hypothetical protein complement(1021672..1022130) Bifidobacterium animalis subsp. lactis Bl-04 8008845 YP_002968315.1 CDS gltD NC_012814.1 1022274 1023809 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(1022274..1023809) Bifidobacterium animalis subsp. lactis Bl-04 8008846 YP_002968316.1 CDS Balac_0892 NC_012814.1 1023811 1028331 R COG0067 Glutamate synthase domain 1; Glutamate synthase complement(1023811..1028331) Bifidobacterium animalis subsp. lactis Bl-04 8008847 YP_002968317.1 CDS Balac_0893 NC_012814.1 1028604 1029917 R COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; Coproporphyrinogen III oxidase complement(1028604..1029917) Bifidobacterium animalis subsp. lactis Bl-04 8008848 YP_002968318.1 CDS Balac_0894 NC_012814.1 1029925 1031805 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1029925..1031805) Bifidobacterium animalis subsp. lactis Bl-04 8008849 YP_002968319.1 CDS rpsT NC_012814.1 1031953 1032213 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1031953..1032213 Bifidobacterium animalis subsp. lactis Bl-04 8008850 YP_002968320.1 CDS Balac_0896 NC_012814.1 1032304 1033089 R COG2860 Predicted membrane protein; hypothetical protein complement(1032304..1033089) Bifidobacterium animalis subsp. lactis Bl-04 8008851 YP_002968321.1 CDS Balac_0897 NC_012814.1 1033209 1034336 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(1033209..1034336) Bifidobacterium animalis subsp. lactis Bl-04 8008852 YP_002968322.1 CDS Balac_0898 NC_012814.1 1034550 1035176 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(1034550..1035176) Bifidobacterium animalis subsp. lactis Bl-04 8008853 YP_002968323.1 CDS Balac_0899 NC_012814.1 1035422 1036423 D COG1073 Hydrolases of the alpha/beta superfamily; putative alpha/beta superfamily hydrolase 1035422..1036423 Bifidobacterium animalis subsp. lactis Bl-04 8008854 YP_002968324.1 CDS Balac_0900 NC_012814.1 1036533 1037948 R COG1282 NAD/NADP transhydrogenase beta subunit; NAD/NADP transhydrogenase subunit beta complement(1036533..1037948) Bifidobacterium animalis subsp. lactis Bl-04 8008855 YP_002968325.1 CDS Balac_0901 NC_012814.1 1037948 1038265 R COG3288 NAD/NADP transhydrogenase alpha subunit; NAD/NADP transhydrogenase subunit alpha complement(1037948..1038265) Bifidobacterium animalis subsp. lactis Bl-04 8008856 YP_002968326.1 CDS Balac_0902 NC_012814.1 1038262 1039416 R COG3288 NAD/NADP transhydrogenase alpha subunit; NAD(P) transhydrogenase subunit alpha part 1 complement(1038262..1039416) Bifidobacterium animalis subsp. lactis Bl-04 8008857 YP_002968327.1 CDS Balac_0903 NC_012814.1 1039683 1041743 D COG1022 Long-chain acyl-CoA synthetases (AMP-forming); long-chain-fatty-acid-CoA ligase 1039683..1041743 Bifidobacterium animalis subsp. lactis Bl-04 8008858 YP_002968328.1 CDS era NC_012814.1 1041817 1042812 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1041817..1042812) Bifidobacterium animalis subsp. lactis Bl-04 8008859 YP_002968329.1 CDS Balac_0905 NC_012814.1 1042814 1044202 R COG1253 Hemolysins and related proteins containing CBS domains; hypothetical protein complement(1042814..1044202) Bifidobacterium animalis subsp. lactis Bl-04 8008860 YP_002968330.1 CDS Balac_0906 NC_012814.1 1044220 1044765 R COG0319 Predicted metal-dependent hydrolase; putative metalloprotease complement(1044220..1044765) Bifidobacterium animalis subsp. lactis Bl-04 8008861 YP_002968331.1 CDS Balac_0907 NC_012814.1 1044755 1045918 R COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase; PhoH-like protein complement(1044755..1045918) Bifidobacterium animalis subsp. lactis Bl-04 8008862 YP_002968332.1 CDS Balac_0908 NC_012814.1 1045973 1046308 R COG0537 Diadenosine tetraphosphate (Ap4A hydrolase and other HIT family hydrolases); hypothetical protein complement(1045973..1046308) Bifidobacterium animalis subsp. lactis Bl-04 8008863 YP_002968333.1 CDS Balac_0909 NC_012814.1 1046400 1047197 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1046400..1047197) Bifidobacterium animalis subsp. lactis Bl-04 8008864 YP_002968334.1 CDS Balac_0911 NC_012814.1 1047483 1048355 D COG0566 rRNA methylases; tRNA/rRNA methyltransferase 1047483..1048355 Bifidobacterium animalis subsp. lactis Bl-04 8009594 YP_002968335.1 CDS Balac_0912 NC_012814.1 1048450 1049112 R transposase complement(1048450..1049112) Bifidobacterium animalis subsp. lactis Bl-04 8008866 YP_002968336.1 CDS glgC NC_012814.1 1049379 1050626 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 1049379..1050626 Bifidobacterium animalis subsp. lactis Bl-04 8008867 YP_002968337.1 CDS Balac_0914 NC_012814.1 1050704 1051276 R COG2151 Predicted metal-sulfur cluster biosynthetic enzyme; hypothetical protein complement(1050704..1051276) Bifidobacterium animalis subsp. lactis Bl-04 8008868 YP_002968338.1 CDS Balac_0915 NC_012814.1 1051278 1051853 R COG0822 NifU homolog involved in Fe-S cluster formation; hypothetical protein complement(1051278..1051853) Bifidobacterium animalis subsp. lactis Bl-04 8008869 YP_002968339.1 CDS Balac_0916 NC_012814.1 1051943 1053214 R COG0520 Selenocysteine lyase; NifS-like aminotransferase complement(1051943..1053214) Bifidobacterium animalis subsp. lactis Bl-04 8008870 YP_002968340.1 CDS Balac_0917 NC_012814.1 1053245 1054024 R COG0396 ABC-type transport system involved in Fe-Scluster assembly, ATPase component; ABC transporter ATP-binding protein complement(1053245..1054024) Bifidobacterium animalis subsp. lactis Bl-04 8008871 YP_002968341.1 CDS Balac_0918 NC_012814.1 1054024 1055250 R COG0719 ABC-type transport system involved in Fe-Scluster assembly, permease component; ABC-type transport system for Fe-S cluster assembly permease complement(1054024..1055250) Bifidobacterium animalis subsp. lactis Bl-04 8008872 YP_002968342.1 CDS Balac_0919 NC_012814.1 1055254 1056750 R COG0719 ABC-type transport system involved in Fe-Scluster assembly, permease component; ABC-type transport system for Fe-S cluster assembly permease complement(1055254..1056750) Bifidobacterium animalis subsp. lactis Bl-04 8008873 YP_002968343.1 CDS Balac_0920 NC_012814.1 1056957 1058624 R COG1376 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1056957..1058624) Bifidobacterium animalis subsp. lactis Bl-04 8008874 YP_002968344.1 CDS Balac_0921 NC_012814.1 1058621 1058722 R hypothetical protein complement(1058621..1058722) Bifidobacterium animalis subsp. lactis Bl-04 8008875 YP_002968345.1 CDS pyrG NC_012814.1 1058770 1060317 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1058770..1060317) Bifidobacterium animalis subsp. lactis Bl-04 8008876 YP_002968346.1 CDS Balac_0923 NC_012814.1 1060583 1061131 R hypothetical protein complement(1060583..1061131) Bifidobacterium animalis subsp. lactis Bl-04 8008877 YP_002968347.1 CDS Balac_0924 NC_012814.1 1061177 1062157 R COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; pullulanase complement(1061177..1062157) Bifidobacterium animalis subsp. lactis Bl-04 8008878 YP_002968348.1 CDS Balac_0925 NC_012814.1 1063260 1063430 D hypothetical protein 1063260..1063430 Bifidobacterium animalis subsp. lactis Bl-04 8008879 YP_002968349.1 CDS Balac_0926 NC_012814.1 1063454 1063570 R hypothetical protein complement(1063454..1063570) Bifidobacterium animalis subsp. lactis Bl-04 8008880 YP_002968350.1 CDS Balac_0927 NC_012814.1 1063871 1064560 R hypothetical protein complement(1063871..1064560) Bifidobacterium animalis subsp. lactis Bl-04 8008881 YP_002968351.1 CDS Balac_0928 NC_012814.1 1064578 1065780 R hypothetical protein complement(1064578..1065780) Bifidobacterium animalis subsp. lactis Bl-04 8008882 YP_002968352.1 CDS Balac_0929 NC_012814.1 1065815 1066984 R hypothetical protein complement(1065815..1066984) Bifidobacterium animalis subsp. lactis Bl-04 8008883 YP_002968353.1 CDS Balac_0930 NC_012814.1 1067152 1067577 D hypothetical protein 1067152..1067577 Bifidobacterium animalis subsp. lactis Bl-04 8008884 YP_002968354.1 CDS Balac_0931 NC_012814.1 1067882 1068334 D hypothetical protein 1067882..1068334 Bifidobacterium animalis subsp. lactis Bl-04 8008885 YP_002968355.1 CDS Balac_0932 NC_012814.1 1068375 1069340 D hypothetical protein 1068375..1069340 Bifidobacterium animalis subsp. lactis Bl-04 8008886 YP_002968356.1 CDS Balac_0933 NC_012814.1 1069462 1069926 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(1069462..1069926) Bifidobacterium animalis subsp. lactis Bl-04 8008887 YP_002968357.1 CDS aroB NC_012814.1 1070052 1071707 R catalyzes the formation of shikimate 3-phosphate from shikimate and the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; bifunctional shikimate kinase/3-dehydroquinate synthase complement(1070052..1071707) Bifidobacterium animalis subsp. lactis Bl-04 8008888 YP_002968358.1 CDS Balac_0935 NC_012814.1 1071721 1072911 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1071721..1072911) Bifidobacterium animalis subsp. lactis Bl-04 8008889 YP_002968359.1 CDS Balac_0936 NC_012814.1 1072983 1073441 D hypothetical protein 1072983..1073441 Bifidobacterium animalis subsp. lactis Bl-04 8008890 YP_002968360.1 CDS Balac_0937 NC_012814.1 1073492 1074673 R COG1559 Predicted periplasmic solute-binding protein; hypothetical protein complement(1073492..1074673) Bifidobacterium animalis subsp. lactis Bl-04 8008891 YP_002968361.1 CDS Balac_0938 NC_012814.1 1074675 1075166 R COG0816 Predicted endonuclease involved inrecombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); putative endonuclease for recombination complement(1074675..1075166) Bifidobacterium animalis subsp. lactis Bl-04 8008892 YP_002968362.1 CDS alaS NC_012814.1 1075166 1077865 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1075166..1077865) Bifidobacterium animalis subsp. lactis Bl-04 8008893 YP_002968363.1 CDS Balac_0940 NC_012814.1 1077921 1078157 R hypothetical protein complement(1077921..1078157) Bifidobacterium animalis subsp. lactis Bl-04 8008894 YP_002968364.1 CDS Balac_0941 NC_012814.1 1078157 1078558 R hypothetical protein complement(1078157..1078558) Bifidobacterium animalis subsp. lactis Bl-04 8008895 YP_002968365.1 CDS Balac_0942 NC_012814.1 1078633 1079310 R COG0406 Fructose-2,6-bisphosphatase; hypothetical protein complement(1078633..1079310) Bifidobacterium animalis subsp. lactis Bl-04 8008896 YP_002968366.1 CDS Balac_0943 NC_012814.1 1079384 1079749 D COG1950 Predicted membrane protein; hypothetical protein 1079384..1079749 Bifidobacterium animalis subsp. lactis Bl-04 8008897 YP_002968367.1 CDS rpsD NC_012814.1 1079853 1080473 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(1079853..1080473) Bifidobacterium animalis subsp. lactis Bl-04 8008898 YP_002968368.1 CDS Balac_0945 NC_012814.1 1080703 1083522 R COG0210 Superfamily I DNA and RNA helicases; Superfamily I DNA and RNA helicase complement(1080703..1083522) Bifidobacterium animalis subsp. lactis Bl-04 8008899 YP_002968369.1 CDS Balac_0946 NC_012814.1 1083604 1084185 D Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 1083604..1084185 Bifidobacterium animalis subsp. lactis Bl-04 8008900 YP_002968370.1 CDS Balac_0947 NC_012814.1 1084330 1085799 D COG2233 Xanthine/uracil permeases; Xanthine/uracil permease 1084330..1085799 Bifidobacterium animalis subsp. lactis Bl-04 8008901 YP_002968371.1 CDS Balac_0948 NC_012814.1 1086006 1086851 D hypothetical protein 1086006..1086851 Bifidobacterium animalis subsp. lactis Bl-04 8008902 YP_002968372.1 CDS Balac_0949 NC_012814.1 1086875 1087129 D COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; class II aminotransferase 1086875..1087129 Bifidobacterium animalis subsp. lactis Bl-04 8008903 YP_002968373.1 CDS Balac_0950 NC_012814.1 1087119 1088069 D COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; bifunctional beta-cystathionase/maltose regulonrepressor 1087119..1088069 Bifidobacterium animalis subsp. lactis Bl-04 8008904 YP_002968374.1 CDS Balac_0951 NC_012814.1 1088066 1088923 R hypothetical protein complement(1088066..1088923) Bifidobacterium animalis subsp. lactis Bl-04 8008905 YP_002968375.1 CDS Balac_0952 NC_012814.1 1089165 1090637 R COG0366 Glycosidases; cytoplasmic alpha-amylase complement(1089165..1090637) Bifidobacterium animalis subsp. lactis Bl-04 8008906 YP_002968376.1 CDS Balac_0953 NC_012814.1 1090788 1091426 R COG2071 Predicted glutamine amidotransferases; amidotransferase subunit complement(1090788..1091426) Bifidobacterium animalis subsp. lactis Bl-04 8008907 YP_002968377.1 CDS Balac_0954 NC_012814.1 1091666 1092145 R COG3760 Uncharacterized conserved protein; prolyl-tRNA synthetase complement(1091666..1092145) Bifidobacterium animalis subsp. lactis Bl-04 8008908 YP_002968378.1 CDS Balac_0955 NC_012814.1 1092243 1092863 R hypothetical protein complement(1092243..1092863) Bifidobacterium animalis subsp. lactis Bl-04 8008909 YP_002968379.1 CDS Balac_0956 NC_012814.1 1092860 1093738 R COG1131 ABC-type multidrug transport system, ATPase component; hypothetical protein complement(1092860..1093738) Bifidobacterium animalis subsp. lactis Bl-04 8008910 YP_002968380.1 CDS Balac_0957 NC_012814.1 1093735 1094271 R COG1725 Predicted transcriptional regulators; hypothetical protein complement(1093735..1094271) Bifidobacterium animalis subsp. lactis Bl-04 8008911 YP_002968381.1 CDS Balac_0958 NC_012814.1 1094496 1095503 D COG1396 Predicted transcriptional regulators; XRE family transcriptional regulator 1094496..1095503 Bifidobacterium animalis subsp. lactis Bl-04 8008912 YP_002968382.1 CDS Balac_0959 NC_012814.1 1095571 1096596 D COG1816 Adenosine deaminase; adenosine deaminase 1095571..1096596 Bifidobacterium animalis subsp. lactis Bl-04 8008913 YP_002968383.1 CDS Balac_0960 NC_012814.1 1096597 1097307 R putative cytoplasmic protein complement(1096597..1097307) Bifidobacterium animalis subsp. lactis Bl-04 8008914 YP_002968384.1 CDS Balac_0961 NC_012814.1 1097593 1097898 D COG1605 Chorismate mutase; chorismate mutase 1097593..1097898 Bifidobacterium animalis subsp. lactis Bl-04 8008915 YP_002968385.1 CDS Balac_0962 NC_012814.1 1098244 1098822 D hypothetical protein 1098244..1098822 Bifidobacterium animalis subsp. lactis Bl-04 8008916 YP_002968386.1 CDS Balac_0963 NC_012814.1 1098835 1099056 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; GCN5-like N-acetyltransferase complement(1098835..1099056) Bifidobacterium animalis subsp. lactis Bl-04 8008917 YP_002968387.1 CDS Balac_0964 NC_012814.1 1099196 1099768 R COG0563 Adenylate kinase and related kinases; putative adenylate kinase DNA topology modulator complement(1099196..1099768) Bifidobacterium animalis subsp. lactis Bl-04 8008918 YP_002968388.1 CDS Balac_0965 NC_012814.1 1100062 1100349 D COG1373 Predicted ATPase (AAA+ superfamily); hypothetical protein 1100062..1100349 Bifidobacterium animalis subsp. lactis Bl-04 8008919 YP_002968389.1 CDS Balac_0966 NC_012814.1 1100519 1100614 D hypothetical protein 1100519..1100614 Bifidobacterium animalis subsp. lactis Bl-04 8008920 YP_002968390.1 CDS Balac_0967 NC_012814.1 1100953 1102872 R COG0480 Translation elongation factors (GTPases); ribosomal protection tetracycline resistance protein complement(1100953..1102872) Bifidobacterium animalis subsp. lactis Bl-04 8008921 YP_002968391.1 CDS Balac_0968 NC_012814.1 1103221 1104186 R COG3039 Transposase and inactivated derivatives, IS5 family; transposase, IS4 family protein complement(1103221..1104186) Bifidobacterium animalis subsp. lactis Bl-04 8008922 YP_002968392.1 CDS Balac_0969 NC_012814.1 1104217 1104618 D COG0107 Imidazoleglycerol-phosphate synthase; hypothetical protein 1104217..1104618 Bifidobacterium animalis subsp. lactis Bl-04 8008923 YP_002968393.1 CDS guaA NC_012814.1 1104814 1106376 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(1104814..1106376) Bifidobacterium animalis subsp. lactis Bl-04 8008924 YP_002968394.1 CDS Balac_0971 NC_012814.1 1106856 1109333 D COG3957 Phosphoketolase; putative phosphoketolase 1106856..1109333 Bifidobacterium animalis subsp. lactis Bl-04 8008925 YP_002968395.1 CDS Balac_0972 NC_012814.1 1109574 1111256 D COG0857 BioD-like N-terminal domain of phosphotransacetylase; phosphate acetyltransferase 1109574..1111256 Bifidobacterium animalis subsp. lactis Bl-04 8008926 YP_002968396.1 CDS Balac_0973 NC_012814.1 1111397 1112644 D COG0282 Acetate kinase; acetate kinase 1111397..1112644 Bifidobacterium animalis subsp. lactis Bl-04 8008927 YP_002968397.1 CDS Balac_0974 NC_012814.1 1112719 1114065 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1112719..1114065) Bifidobacterium animalis subsp. lactis Bl-04 8008928 YP_002968398.1 CDS Balac_0976 NC_012814.1 1114373 1115602 D hypothetical protein 1114373..1115602 Bifidobacterium animalis subsp. lactis Bl-04 8009595 YP_002968399.1 CDS Balac_0977 NC_012814.1 1115665 1117782 R COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; glycogen operon protein GlgX complement(1115665..1117782) Bifidobacterium animalis subsp. lactis Bl-04 8008930 YP_002968400.1 CDS Balac_0978 NC_012814.1 1117855 1118508 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; NTP pyrophosphohydrolase complement(1117855..1118508) Bifidobacterium animalis subsp. lactis Bl-04 8008931 YP_002968401.1 CDS Balac_0979 NC_012814.1 1118512 1119447 R COG0327 Uncharacterized conserved protein; hypothetical protein complement(1118512..1119447) Bifidobacterium animalis subsp. lactis Bl-04 8008932 YP_002968402.1 CDS Balac_0980 NC_012814.1 1119482 1122364 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(1119482..1122364) Bifidobacterium animalis subsp. lactis Bl-04 8008933 YP_002968403.1 CDS Balac_0981 NC_012814.1 1122444 1123202 R COG3707 Response regulator with putative antiterminator output domain; putative response regulator complement(1122444..1123202) Bifidobacterium animalis subsp. lactis Bl-04 8008934 YP_002968404.1 CDS Balac_0982 NC_012814.1 1123335 1123964 R COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; NTP pyrophosphohydrolase complement(1123335..1123964) Bifidobacterium animalis subsp. lactis Bl-04 8008935 YP_002968405.1 CDS Balac_0984 NC_012814.1 1124321 1125682 R COG0469 Pyruvate kinase; pyruvate kinase complement(1124321..1125682) Bifidobacterium animalis subsp. lactis Bl-04 8009596 YP_002968406.1 CDS Balac_0985 NC_012814.1 1125931 1126920 R COG0861 Membrane protein TerC, possibly involved in tellurium resistance; putative tellurium resistance membrane protein complement(1125931..1126920) Bifidobacterium animalis subsp. lactis Bl-04 8008937 YP_002968407.1 CDS Balac_0986 NC_012814.1 1126983 1129094 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(1126983..1129094) Bifidobacterium animalis subsp. lactis Bl-04 8008938 YP_002968408.1 CDS Balac_0987 NC_012814.1 1129103 1129744 R COG0237 Dephospho-CoA kinase; dephospho-CoA kinase complement(1129103..1129744) Bifidobacterium animalis subsp. lactis Bl-04 8008939 YP_002968409.1 CDS rpsA NC_012814.1 1129855 1131336 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(1129855..1131336) Bifidobacterium animalis subsp. lactis Bl-04 8008940 YP_002968410.1 CDS Balac_0989 NC_012814.1 1131508 1132401 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1131508..1132401) Bifidobacterium animalis subsp. lactis Bl-04 8008941 YP_002968411.1 CDS Balac_0990 NC_012814.1 1132509 1133513 D COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; ABC transporter substrate-binding protein 1132509..1133513 Bifidobacterium animalis subsp. lactis Bl-04 8008942 YP_002968412.1 CDS Balac_0991 NC_012814.1 1133654 1134565 D COG1121 ABC-type Mn/Zn transport systems, ATPase component; Mn2+/Zn2+ ABC transporter ATPase 1133654..1134565 Bifidobacterium animalis subsp. lactis Bl-04 8008943 YP_002968413.1 CDS Balac_0992 NC_012814.1 1134562 1135407 D COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; Mn2+/Zn2+ ABC transporter permease 1134562..1135407 Bifidobacterium animalis subsp. lactis Bl-04 8008944 YP_002968414.1 CDS ispF NC_012814.1 1135518 1136021 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(1135518..1136021) Bifidobacterium animalis subsp. lactis Bl-04 8008945 YP_002968415.1 CDS Balac_0994 NC_012814.1 1136018 1136614 R COG1329 Transcriptional regulators, similar to M.xanthus CarD; transcriptional regulator complement(1136018..1136614) Bifidobacterium animalis subsp. lactis Bl-04 8008946 YP_002968416.1 CDS Balac_0995 NC_012814.1 1136791 1139004 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 1136791..1139004 Bifidobacterium animalis subsp. lactis Bl-04 8008947 YP_002968417.1 CDS Balac_0996 NC_012814.1 1139032 1139751 D COG0745 Response regulators consisting of aCheY-like receiver domain and a winged-helix DNA-binding domain; putative response regulator 1139032..1139751 Bifidobacterium animalis subsp. lactis Bl-04 8008948 YP_002968418.1 CDS Balac_0997 NC_012814.1 1139757 1140857 D COG0642 Signal transduction histidine kinase; sensor protein 1139757..1140857 Bifidobacterium animalis subsp. lactis Bl-04 8008949 YP_002968419.1 CDS Balac_0998 NC_012814.1 1140920 1141504 R COG1040 Predicted amidophosphoribosyltransferases; hypothetical protein complement(1140920..1141504) Bifidobacterium animalis subsp. lactis Bl-04 8008950 YP_002968420.1 CDS Balac_0999 NC_012814.1 1141711 1142517 R COG0561 Predicted hydrolases of the HAD superfamily; hypothetical protein complement(1141711..1142517) Bifidobacterium animalis subsp. lactis Bl-04 8008951 YP_002968421.1 CDS Balac_1000 NC_012814.1 1142718 1143038 D hypothetical protein 1142718..1143038 Bifidobacterium animalis subsp. lactis Bl-04 8008952 YP_002968422.1 CDS Balac_1001 NC_012814.1 1143045 1144589 R hypothetical protein complement(1143045..1144589) Bifidobacterium animalis subsp. lactis Bl-04 8008953 YP_002968423.1 CDS Balac_1002 NC_012814.1 1144586 1147681 R COG1216 Predicted glycosyltransferases; hypothetical protein complement(1144586..1147681) Bifidobacterium animalis subsp. lactis Bl-04 8008954 YP_002968424.1 CDS Balac_1003 NC_012814.1 1147874 1149331 D COG1316 Transcriptional regulator; transcriptional regulator 1147874..1149331 Bifidobacterium animalis subsp. lactis Bl-04 8008955 YP_002968425.1 CDS Balac_1004 NC_012814.1 1149876 1150811 D COG1316 Transcriptional regulator; transcriptional regulator 1149876..1150811 Bifidobacterium animalis subsp. lactis Bl-04 8008956 YP_002968426.1 CDS Balac_1005 NC_012814.1 1150957 1152606 D COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; DNA segregation ATPase 1150957..1152606 Bifidobacterium animalis subsp. lactis Bl-04 8008957 YP_002968427.1 CDS Balac_1006 NC_012814.1 1152699 1152977 D hypothetical protein 1152699..1152977 Bifidobacterium animalis subsp. lactis Bl-04 8008958 YP_002968428.1 CDS Balac_1007 NC_012814.1 1153062 1154540 R COG3920 Signal transduction histidine kinase; histidine kinase-like protein complement(1153062..1154540) Bifidobacterium animalis subsp. lactis Bl-04 8008959 YP_002968429.1 CDS Balac_1008 NC_012814.1 1154674 1155558 D COG0330 Membrane protease subunits, stomatin/prohibitin homologs; hypothetical protein 1154674..1155558 Bifidobacterium animalis subsp. lactis Bl-04 8008960 YP_002968430.1 CDS Balac_1009 NC_012814.1 1155639 1156121 R COG0782 Transcription elongation factor; transcription elongation factor GreA complement(1155639..1156121) Bifidobacterium animalis subsp. lactis Bl-04 8008961 YP_002968431.1 CDS Balac_1010 NC_012814.1 1156207 1156614 R COG0545 FKBP-type peptidyl-prolyl cis-transisomerases 1; peptidyl-prolyl cis-trans isomerase complement(1156207..1156614) Bifidobacterium animalis subsp. lactis Bl-04 8008962 YP_002968432.1 CDS Balac_1011 NC_012814.1 1156702 1158192 R COG1760 L-serine deaminase; L-serine dehydratase complement(1156702..1158192) Bifidobacterium animalis subsp. lactis Bl-04 8008963 YP_002968433.1 CDS Balac_1012 NC_012814.1 1158233 1158757 R Cd efflux system component complement(1158233..1158757) Bifidobacterium animalis subsp. lactis Bl-04 8008964 YP_002968434.1 CDS Balac_1014 NC_012814.1 1159158 1160180 R COG0248 Exopolyphosphatase; exopolyphosphatase complement(1159158..1160180) Bifidobacterium animalis subsp. lactis Bl-04 8009597 YP_002968435.1 CDS Balac_1015 NC_012814.1 1160220 1160828 R COG1507 Uncharacterized conserved protein; hypothetical protein complement(1160220..1160828) Bifidobacterium animalis subsp. lactis Bl-04 8008966 YP_002968436.1 CDS Balac_1016 NC_012814.1 1160900 1161472 R COG2919 Septum formation initiator; hypothetical protein complement(1160900..1161472) Bifidobacterium animalis subsp. lactis Bl-04 8008967 YP_002968437.1 CDS eno NC_012814.1 1161570 1162862 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1161570..1162862) Bifidobacterium animalis subsp. lactis Bl-04 8008968 YP_002968438.1 CDS Balac_1018 NC_012814.1 1163140 1164048 D COG0600 ABC-type nitrate/sulfonate/bicarbonatetransport system, permease component; binding-protein-dependent transport systems, inner membrane component 1163140..1164048 Bifidobacterium animalis subsp. lactis Bl-04 8008969 YP_002968439.1 CDS Balac_1019 NC_012814.1 1164141 1165106 D COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components; extracellular solute-binding protein 1164141..1165106 Bifidobacterium animalis subsp. lactis Bl-04 8008970 YP_002968440.1 CDS Balac_1020 NC_012814.1 1165279 1165977 D COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component; ABC transporter 1165279..1165977 Bifidobacterium animalis subsp. lactis Bl-04 8008971 YP_002968441.1 CDS Balac_1021 NC_012814.1 1166149 1169733 R COG1197 Transcription-repair coupling factor (superfamily II helicase); transcription-repair coupling factor complement(1166149..1169733) Bifidobacterium animalis subsp. lactis Bl-04 8008972 YP_002968442.1 CDS Balac_1022 NC_012814.1 1169723 1170322 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(1169723..1170322) Bifidobacterium animalis subsp. lactis Bl-04 8008973 YP_002968443.1 CDS Balac_1023 NC_012814.1 1170366 1171013 R COG1247 Sortase and related acyltransferases; N-acetyl transferase complement(1170366..1171013) Bifidobacterium animalis subsp. lactis Bl-04 8008974 YP_002968444.1 CDS Balac_1024 NC_012814.1 1171029 1174196 R COG1615 Uncharacterized conserved protein; hypothetical protein complement(1171029..1174196) Bifidobacterium animalis subsp. lactis Bl-04 8008975 YP_002968445.1 CDS Balac_1025 NC_012814.1 1174347 1175786 D COG1472 Beta-glucosidase-related glycosidases; B-hexosaminidase 1174347..1175786 Bifidobacterium animalis subsp. lactis Bl-04 8008976 YP_002968446.1 CDS Balac_1026 NC_012814.1 1175846 1176040 R COG2879 Uncharacterized small protein; hypothetical protein complement(1175846..1176040) Bifidobacterium animalis subsp. lactis Bl-04 8008977 YP_002968447.1 CDS Balac_1027 NC_012814.1 1176090 1178507 R COG1966 Carbon starvation protein, predicted membrane protein; carbon starvation protein A complement(1176090..1178507) Bifidobacterium animalis subsp. lactis Bl-04 8008978 YP_002968448.1 CDS Balac_1028 NC_012814.1 1178538 1178717 R COG1132 ABC-type multidrug transport system, ATPase and permease components; ABC transporter complement(1178538..1178717) Bifidobacterium animalis subsp. lactis Bl-04 8008979 YP_002968449.1 CDS Balac_1029 NC_012814.1 1178705 1179184 R COG1132 ABC-type multidrug transport system, ATPase and permease components; hypothetical protein complement(1178705..1179184) Bifidobacterium animalis subsp. lactis Bl-04 8008980 YP_002968450.1 CDS Balac_1030 NC_012814.1 1179418 1179963 R COG3910 Predicted ATPase; SMC domain-containing protein complement(1179418..1179963) Bifidobacterium animalis subsp. lactis Bl-04 8008981 YP_002968451.1 CDS Balac_1031 NC_012814.1 1180006 1180197 R hypothetical protein complement(1180006..1180197) Bifidobacterium animalis subsp. lactis Bl-04 8008982 YP_002968452.1 CDS Balac_1032 NC_012814.1 1180287 1180799 R COG1846 Transcriptional regulators; transcriptional regulator complement(1180287..1180799) Bifidobacterium animalis subsp. lactis Bl-04 8008983 YP_002968453.1 CDS Balac_1033 NC_012814.1 1180842 1181306 R Nucleoside 2-deoxyribosyltransferase complement(1180842..1181306) Bifidobacterium animalis subsp. lactis Bl-04 8008984 YP_002968454.1 CDS aspA NC_012814.1 1181483 1182952 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 1181483..1182952 Bifidobacterium animalis subsp. lactis Bl-04 8008985 YP_002968455.1 CDS Balac_1035 NC_012814.1 1183171 1183377 D COG1918 Fe2+ transport system protein A; hypothetical protein 1183171..1183377 Bifidobacterium animalis subsp. lactis Bl-04 8008986 YP_002968456.1 CDS Balac_1036 NC_012814.1 1183426 1185477 D COG0370 Fe2+ transport system protein B; ferrous iron transport protein B 1183426..1185477 Bifidobacterium animalis subsp. lactis Bl-04 8008987 YP_002968457.1 CDS Balac_1037 NC_012814.1 1185573 1185842 D hypothetical protein 1185573..1185842 Bifidobacterium animalis subsp. lactis Bl-04 8008988 YP_002968458.1 CDS Balac_1038 NC_012814.1 1185981 1187540 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1185981..1187540 Bifidobacterium animalis subsp. lactis Bl-04 8008989 YP_002968459.1 CDS Balac_1039 NC_012814.1 1187537 1188487 D COG3429 Glucose-6-P dehydrogenase subunit; hypothetical protein 1187537..1188487 Bifidobacterium animalis subsp. lactis Bl-04 8008990 YP_002968460.1 CDS Balac_1040 NC_012814.1 1188567 1189358 D COG03636-phosphogluconolactonase/Glucosamine-6- phosphateisomerase/deaminase; 6-phosphogluconolactonase 1188567..1189358 Bifidobacterium animalis subsp. lactis Bl-04 8008991 YP_002968461.1 CDS Balac_1041 NC_012814.1 1189437 1190894 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(1189437..1190894) Bifidobacterium animalis subsp. lactis Bl-04 8008992 YP_002968462.1 CDS Balac_1042 NC_012814.1 1190953 1191660 R COG3340 Peptidase E; hypothetical protein complement(1190953..1191660) Bifidobacterium animalis subsp. lactis Bl-04 8008993 YP_002968463.1 CDS Balac_1043 NC_012814.1 1191811 1193175 D COG1114 Branched-chain amino acid permeases; Branched-chain amino acid permease 1191811..1193175 Bifidobacterium animalis subsp. lactis Bl-04 8008994 YP_002968464.1 CDS Balac_1044 NC_012814.1 1193192 1194184 R COG0225 Peptide methionine sulfoxide reductase; Peptide methionine sulfoxide reductase-like protein complement(1193192..1194184) Bifidobacterium animalis subsp. lactis Bl-04 8008995 YP_002968465.1 CDS Balac_1045 NC_012814.1 1194192 1196912 R COG4633 Uncharacterized protein conserved in bacteria; ActP copper transport ATPase complement(1194192..1196912) Bifidobacterium animalis subsp. lactis Bl-04 8008996 YP_002968466.1 CDS Balac_1046 NC_012814.1 1196968 1198008 D COG0300 Short-chain dehydrogenases of various substrate specificities; short-chain dehydrogenase/reductase SDR 1196968..1198008 Bifidobacterium animalis subsp. lactis Bl-04 8008997 YP_002968467.1 CDS Balac_1047 NC_012814.1 1198261 1200198 R COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase complement(1198261..1200198) Bifidobacterium animalis subsp. lactis Bl-04 8008998 YP_002968468.1 CDS Balac_1048 NC_012814.1 1200422 1201540 D COG2855 Predicted membrane protein; hypothetical protein 1200422..1201540 Bifidobacterium animalis subsp. lactis Bl-04 8008999 YP_002968469.1 CDS Balac_1049 NC_012814.1 1201769 1203100 D COG2233 Xanthine/uracil permeases; purine or uracil permease 1201769..1203100 Bifidobacterium animalis subsp. lactis Bl-04 8009000 YP_002968470.1 CDS Balac_1050 NC_012814.1 1203239 1204312 D COG0657 Esterase/lipase; lipase 1203239..1204312 Bifidobacterium animalis subsp. lactis Bl-04 8009001 YP_002968471.1 CDS Balac_1051 NC_012814.1 1204397 1204777 D hypothetical protein 1204397..1204777 Bifidobacterium animalis subsp. lactis Bl-04 8009002 YP_002968472.1 CDS Balac_1052 NC_012814.1 1204943 1205293 D COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain; hypothetical protein 1204943..1205293 Bifidobacterium animalis subsp. lactis Bl-04 8009003 YP_002968473.1 CDS Balac_1053 NC_012814.1 1205382 1206476 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(1205382..1206476) Bifidobacterium animalis subsp. lactis Bl-04 8009004 YP_002968474.1 CDS Balac_1054 NC_012814.1 1206609 1207403 R COG0345 Pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase complement(1206609..1207403) Bifidobacterium animalis subsp. lactis Bl-04 8009005 YP_002968475.1 CDS Balac_1055 NC_012814.1 1207466 1208803 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); proline iminopeptidase complement(1207466..1208803) Bifidobacterium animalis subsp. lactis Bl-04 8009006 YP_002968476.1 CDS Balac_1056 NC_012814.1 1208926 1211481 D COG4585 Signal transduction histidine kinase; histidine kinase sensor of two-component system 1208926..1211481 Bifidobacterium animalis subsp. lactis Bl-04 8009007 YP_002968477.1 CDS Balac_1057 NC_012814.1 1211601 1212281 D COG2197 Response regulator containing a CheY-likereceiver domain and an HTH DNA-binding domain; putative response regulator 1211601..1212281 Bifidobacterium animalis subsp. lactis Bl-04 8009008 YP_002968478.1 CDS Balac_1058 NC_012814.1 1212397 1215003 R COG0577 ABC-type antimicrobial peptide transport system, permease component; SalY-type antimicrobial peptide transport system permease complement(1212397..1215003) Bifidobacterium animalis subsp. lactis Bl-04 8009009 YP_002968479.1 CDS Balac_1059 NC_012814.1 1215047 1215985 R COG1136 ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter ATP-binding protein complement(1215047..1215985) Bifidobacterium animalis subsp. lactis Bl-04 8009010 YP_002968480.1 CDS Balac_1060 NC_012814.1 1216147 1216950 R COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; cobalt transport protein complement(1216147..1216950) Bifidobacterium animalis subsp. lactis Bl-04 8009011 YP_002968481.1 CDS Balac_1061 NC_012814.1 1216950 1218485 R COG1122 ABC-type cobalt transport system, ATPase component; cobalt ABC transporter ATPase complement(1216950..1218485) Bifidobacterium animalis subsp. lactis Bl-04 8009012 YP_002968482.1 CDS Balac_1062 NC_012814.1 1218566 1218727 R hypothetical protein complement(1218566..1218727) Bifidobacterium animalis subsp. lactis Bl-04 8009013 YP_002968483.1 CDS Balac_1063 NC_012814.1 1218734 1220056 R COG2873 O-acetylhomoserine sulfhydrylase; O-acetylhomoserine sulfhydrylase complement(1218734..1220056) Bifidobacterium animalis subsp. lactis Bl-04 8009014 YP_002968484.1 CDS Balac_1064 NC_012814.1 1220362 1221231 D COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase; pyridoxine kinase 1220362..1221231 Bifidobacterium animalis subsp. lactis Bl-04 8009015 YP_002968485.1 CDS Balac_1065 NC_012814.1 1221428 1221904 D COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; hypothetical protein 1221428..1221904 Bifidobacterium animalis subsp. lactis Bl-04 8009016 YP_002968486.1 CDS Balac_1066 NC_012814.1 1221904 1223436 D COG0606 Predicted ATPase with chaperone activity; putative ATP-dependent serine protease 1221904..1223436 Bifidobacterium animalis subsp. lactis Bl-04 8009017 YP_002968487.1 CDS Balac_1067 NC_012814.1 1223470 1224615 D COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; hypothetical protein 1223470..1224615 Bifidobacterium animalis subsp. lactis Bl-04 8009018 YP_002968488.1 CDS Balac_1068 NC_012814.1 1224668 1226503 D COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; succinate dehydrogenase flavoprotein subunit 1224668..1226503 Bifidobacterium animalis subsp. lactis Bl-04 8009019 YP_002968489.1 CDS Balac_1069 NC_012814.1 1226612 1227568 D COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Succinate dehydrogenase/fumarate reductase Fe-Sprotein subunit 1226612..1227568 Bifidobacterium animalis subsp. lactis Bl-04 8009020 YP_002968490.1 CDS Balac_1070 NC_012814.1 1227581 1228252 D COG4122 Predicted O-methyltransferase; methyltransferase 1227581..1228252 Bifidobacterium animalis subsp. lactis Bl-04 8009021 YP_002968491.1 CDS Balac_1071 NC_012814.1 1228315 1229118 R COG1611 Predicted Rossmann fold nucleotide-binding protein; hypothetical protein complement(1228315..1229118) Bifidobacterium animalis subsp. lactis Bl-04 8009022 YP_002968492.1 CDS Balac_1072 NC_012814.1 1229197 1230597 R COG3004 Na+/H+ antiporter; Kef-type K+ transport systems membrane protein complement(1229197..1230597) Bifidobacterium animalis subsp. lactis Bl-04 8009023 YP_002968493.1 CDS Balac_1073 NC_012814.1 1230683 1231903 R COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; class I and II aminotransferase complement(1230683..1231903) Bifidobacterium animalis subsp. lactis Bl-04 8009024 YP_002968494.1 CDS clpX NC_012814.1 1232353 1233681 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1232353..1233681) Bifidobacterium animalis subsp. lactis Bl-04 8009599 YP_002968495.1 CDS clpP NC_012814.1 1233783 1234484 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(1233783..1234484) Bifidobacterium animalis subsp. lactis Bl-04 8009026 YP_002968496.1 CDS Balac_1078 NC_012814.1 1234487 1235101 R COG0740 Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit 2 complement(1234487..1235101) Bifidobacterium animalis subsp. lactis Bl-04 8009027 YP_002968497.1 CDS Balac_1079 NC_012814.1 1235200 1236597 R COG0038 Chloride channel protein EriC; hypothetical protein complement(1235200..1236597) Bifidobacterium animalis subsp. lactis Bl-04 8009028 YP_002968498.1 CDS tig NC_012814.1 1236672 1238057 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(1236672..1238057) Bifidobacterium animalis subsp. lactis Bl-04 8009029 YP_002968499.1 CDS Balac_1081 NC_012814.1 1238115 1239416 R COG0349 Ribonuclease D; hypothetical protein complement(1238115..1239416) Bifidobacterium animalis subsp. lactis Bl-04 8009030 YP_002968500.1 CDS Balac_1082 NC_012814.1 1239517 1240419 R COG1180 Pyruvate-formate lyase-activating enzyme; pyruvate formate-lyase 1 activating enzyme complement(1239517..1240419) Bifidobacterium animalis subsp. lactis Bl-04 8009031 YP_002968501.1 CDS Balac_1083 NC_012814.1 1240510 1242888 R COG1882 Pyruvate-formate lyase; formate acetyltransferase complement(1240510..1242888) Bifidobacterium animalis subsp. lactis Bl-04 8009032 YP_002968502.1 CDS Balac_1084 NC_012814.1 1243114 1243314 R hypothetical protein complement(1243114..1243314) Bifidobacterium animalis subsp. lactis Bl-04 8009033 YP_002968503.1 CDS Balac_1085 NC_012814.1 1243356 1245056 R COG0388 Predicted amidohydrolase; putative amidohydrolase complement(1243356..1245056) Bifidobacterium animalis subsp. lactis Bl-04 8009034 YP_002968504.1 CDS Balac_1086 NC_012814.1 1245276 1246439 R COG1473 Metal-dependentamidase/aminoacylase/carboxypeptidase; hypothetical protein complement(1245276..1246439) Bifidobacterium animalis subsp. lactis Bl-04 8009035 YP_002968505.1 CDS Balac_1087 NC_012814.1 1246544 1247254 R COG2011 ABC-type metal ion transport system, permease component; metal ion ABC transporter permease complement(1246544..1247254) Bifidobacterium animalis subsp. lactis Bl-04 8009036 YP_002968506.1 CDS Balac_1088 NC_012814.1 1247254 1248549 R COG1135 ABC-type metal ion transport system, ATPase component; ABC transporter ATP-binding protein complement(1247254..1248549) Bifidobacterium animalis subsp. lactis Bl-04 8009037 YP_002968507.1 CDS Balac_1089 NC_012814.1 1248736 1249734 R COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; metal ion ABC transporter periplasmic component complement(1248736..1249734) Bifidobacterium animalis subsp. lactis Bl-04 8009038 YP_002968508.1 CDS Balac_1090 NC_012814.1 1249964 1250488 D COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase - cyclophilin family); peptidyl-prolyl cis-trans isomerase 1249964..1250488 Bifidobacterium animalis subsp. lactis Bl-04 8009039 YP_002968509.1 CDS Balac_1091 NC_012814.1 1250583 1252916 R COG0317 Guanosine polyphosphatepyrophosphohydrolases/synthetases; GTP pyrophosphokinase complement(1250583..1252916) Bifidobacterium animalis subsp. lactis Bl-04 8009040 YP_002968510.1 CDS Balac_1092 NC_012814.1 1253023 1253490 R COG0756 dUTPase; dUTPase complement(1253023..1253490) Bifidobacterium animalis subsp. lactis Bl-04 8009041 YP_002968511.1 CDS Balac_1093 NC_012814.1 1253490 1253783 R hypothetical protein complement(1253490..1253783) Bifidobacterium animalis subsp. lactis Bl-04 8009042 YP_002968512.1 CDS Balac_1094 NC_012814.1 1253910 1255244 D hypothetical protein 1253910..1255244 Bifidobacterium animalis subsp. lactis Bl-04 8009043 YP_002968513.1 CDS Balac_1095 NC_012814.1 1255256 1256533 R COG1524 Uncharacterized proteins of the AP superfamily; hypothetical protein complement(1255256..1256533) Bifidobacterium animalis subsp. lactis Bl-04 8009044 YP_002968514.1 CDS Balac_1096 NC_012814.1 1256656 1259331 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1256656..1259331 Bifidobacterium animalis subsp. lactis Bl-04 8009045 YP_002968515.1 CDS glcU NC_012814.1 1259414 1260373 R COG4975 Putative glucose uptake permease; putative glucose uptake permease complement(1259414..1260373) Bifidobacterium animalis subsp. lactis Bl-04 8009046 YP_002968516.1 CDS Balac_1098 NC_012814.1 1260505 1265166 R COG1201 Lhr-like helicases; ATP-dependent helicase II complement(1260505..1265166) Bifidobacterium animalis subsp. lactis Bl-04 8009047 YP_002968517.1 CDS Balac_1099 NC_012814.1 1265194 1265823 R major facilitator transporter complement(1265194..1265823) Bifidobacterium animalis subsp. lactis Bl-04 8009048 YP_002968518.1 CDS Balac_1100 NC_012814.1 1266542 1267723 R COG0738 Fucose permease; hypothetical protein complement(1266542..1267723) Bifidobacterium animalis subsp. lactis Bl-04 8009049 YP_002968519.1 CDS Balac_1101 NC_012814.1 1267836 1269008 D COG0438 Glycosyltransferase; phosphatidylinositol alpha-mannosyltransferase 1267836..1269008 Bifidobacterium animalis subsp. lactis Bl-04 8009050 YP_002968520.1 CDS Balac_1102 NC_012814.1 1269143 1271482 R COG0187 Type IIA topoisomerase (DNA gyrase/topo II,topoisomerase IV, B subunit); DNA gyrase subunit B complement(1269143..1271482) Bifidobacterium animalis subsp. lactis Bl-04 8009051 YP_002968521.1 CDS Balac_1103 NC_012814.1 1271617 1273083 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor complement(1271617..1273083) Bifidobacterium animalis subsp. lactis Bl-04 8009052 YP_002968522.1 CDS Balac_1104 NC_012814.1 1273215 1273919 R hypothetical protein complement(1273215..1273919) Bifidobacterium animalis subsp. lactis Bl-04 8009053 YP_002968523.1 CDS Balac_1105 NC_012814.1 1274100 1275200 D COG0142 Geranylgeranyl pyrophosphate synthase; bifunctional short chain isoprenyl diphosphatesynthase 1274100..1275200 Bifidobacterium animalis subsp. lactis Bl-04 8009054 YP_002968524.1 CDS Balac_1106 NC_012814.1 1275260 1277485 D COG0515 Serine/threonine protein kinase; serine-threonine protein kinase 1275260..1277485 Bifidobacterium animalis subsp. lactis Bl-04 8009055 YP_002968525.1 CDS Balac_1107 NC_012814.1 1277535 1278275 R COG0204 1-acyl-sn-glycerol-3-phosphateacyltransferase; hypothetical protein complement(1277535..1278275) Bifidobacterium animalis subsp. lactis Bl-04 8009056 YP_002968526.1 CDS Balac_1108 NC_012814.1 1278325 1278891 D hypothetical protein 1278325..1278891 Bifidobacterium animalis subsp. lactis Bl-04 8009057 YP_002968527.1 CDS trpD NC_012814.1 1278983 1280035 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(1278983..1280035) Bifidobacterium animalis subsp. lactis Bl-04 8009058 YP_002968528.1 CDS Balac_1110 NC_012814.1 1280169 1283093 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(1280169..1283093) Bifidobacterium animalis subsp. lactis Bl-04 8009059 YP_002968529.1 CDS Balac_1111 NC_012814.1 1283301 1283987 R COG1544 Ribosome-associated protein Y (PSrp-1); hypothetical protein complement(1283301..1283987) Bifidobacterium animalis subsp. lactis Bl-04 8009060 YP_002968530.1 CDS Balac_1112 NC_012814.1 1284460 1284591 D hypothetical protein 1284460..1284591 Bifidobacterium animalis subsp. lactis Bl-04 8009061 YP_002968531.1 CDS Balac_1113 NC_012814.1 1284659 1285288 R COG2137 Uncharacterized protein conserved in bacteria; RecX-like protein complement(1284659..1285288) Bifidobacterium animalis subsp. lactis Bl-04 8009062 YP_002968532.1 CDS recA NC_012814.1 1285398 1286546 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(1285398..1286546) Bifidobacterium animalis subsp. lactis Bl-04 8009063 YP_002968533.1 CDS Balac_1115 NC_012814.1 1286818 1287069 R hypothetical protein complement(1286818..1287069) Bifidobacterium animalis subsp. lactis Bl-04 8009064 YP_002968534.1 CDS Balac_1116 NC_012814.1 1287199 1287714 R COG1396 Predicted transcriptional regulators; DNA binding protein complement(1287199..1287714) Bifidobacterium animalis subsp. lactis Bl-04 8009065 YP_002968535.1 CDS Balac_1117 NC_012814.1 1287737 1288363 R COG1546 Uncharacterized protein (competence- andmitomycin-induced); CinA-like protein complement(1287737..1288363) Bifidobacterium animalis subsp. lactis Bl-04 8009066 YP_002968536.1 CDS Balac_1118 NC_012814.1 1288546 1289169 R COG0558 Phosphatidylglycerophosphate synthase; DP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1288546..1289169) Bifidobacterium animalis subsp. lactis Bl-04 8009067 YP_002968537.1 CDS Balac_1119 NC_012814.1 1289315 1291930 R COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; DNA translocase ftsK complement(1289315..1291930) Bifidobacterium animalis subsp. lactis Bl-04 8009068 YP_002968538.1 CDS miaA NC_012814.1 1292188 1293222 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1292188..1293222) Bifidobacterium animalis subsp. lactis Bl-04 8009069 YP_002968539.1 CDS Balac_1121 NC_012814.1 1293203 1294678 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1293203..1294678) Bifidobacterium animalis subsp. lactis Bl-04 8009070 YP_002968540.1 CDS Balac_1122 NC_012814.1 1294754 1295572 D COG2357 Uncharacterized protein conserved in bacteria; hypothetical protein 1294754..1295572 Bifidobacterium animalis subsp. lactis Bl-04 8009071 YP_002968541.1 CDS Balac_1123 NC_012814.1 1295658 1296443 R COG0670 Integral membrane protein, interacts withFtsH; hypothetical protein complement(1295658..1296443) Bifidobacterium animalis subsp. lactis Bl-04 8009072 YP_002968542.1 CDS Balac_1124 NC_012814.1 1296705 1297730 D COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase; hypothetical protein 1296705..1297730 Bifidobacterium animalis subsp. lactis Bl-04 8009073 YP_002968543.1 CDS Balac_1125 NC_012814.1 1299146 1300426 R multidrug ABC transporter permease complement(1299146..1300426) Bifidobacterium animalis subsp. lactis Bl-04 8009074 YP_002968544.1 CDS Balac_1126 NC_012814.1 1300460 1301449 R COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter ATP-binding protein complement(1300460..1301449) Bifidobacterium animalis subsp. lactis Bl-04 8009075 YP_002968545.1 CDS Balac_1127 NC_012814.1 1301596 1302762 D COG4585 Signal transduction histidine kinase; signal transduction histidine kinase 1301596..1302762 Bifidobacterium animalis subsp. lactis Bl-04 8009076 YP_002968546.1 CDS Balac_1128 NC_012814.1 1302759 1303415 D COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; two-component system response regulator 1302759..1303415 Bifidobacterium animalis subsp. lactis Bl-04 8009077 YP_002968547.1 CDS Balac_1129 NC_012814.1 1303397 1304212 R hypothetical protein complement(1303397..1304212) Bifidobacterium animalis subsp. lactis Bl-04 8009078 YP_002968548.1 CDS Balac_1130 NC_012814.1 1304241 1305374 R COG3464 Transposase and inactivated derivatives; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(1304241..1305374) Bifidobacterium animalis subsp. lactis Bl-04 8009079 YP_002968549.1 CDS Balac_1131 NC_012814.1 1305581 1306894 R COG1479 Uncharacterized conserved protein; hypothetical protein complement(1305581..1306894) Bifidobacterium animalis subsp. lactis Bl-04 8009080 YP_002968550.1 CDS Balac_1132 NC_012814.1 1307042 1307683 R COG0110 Acetyltransferase (isoleucine patch superfamily); galactoside O-acetyltransferase complement(1307042..1307683) Bifidobacterium animalis subsp. lactis Bl-04 8009081 YP_002968551.1 CDS Balac_1133 NC_012814.1 1307856 1308107 D hypothetical protein 1307856..1308107 Bifidobacterium animalis subsp. lactis Bl-04 8009082 YP_002968552.1 CDS Balac_1134 NC_012814.1 1308191 1310890 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1308191..1310890) Bifidobacterium animalis subsp. lactis Bl-04 8009083 YP_002968553.1 CDS Balac_1135 NC_012814.1 1310958 1313528 R COG0474 Cation transport ATPase; cation-transporting ATPase complement(1310958..1313528) Bifidobacterium animalis subsp. lactis Bl-04 8009084 YP_002968554.1 CDS Balac_1136 NC_012814.1 1313577 1314164 R hypothetical protein complement(1313577..1314164) Bifidobacterium animalis subsp. lactis Bl-04 8009085 YP_002968555.1 CDS Balac_1137 NC_012814.1 1314500 1315810 R COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5--methyltransferase); RNA methyltransferase complement(1314500..1315810) Bifidobacterium animalis subsp. lactis Bl-04 8009086 YP_002968556.1 CDS Balac_1138 NC_012814.1 1315924 1316694 R hypothetical protein complement(1315924..1316694) Bifidobacterium animalis subsp. lactis Bl-04 8009087 YP_002968557.1 CDS Balac_1139 NC_012814.1 1316763 1317620 R hypothetical protein complement(1316763..1317620) Bifidobacterium animalis subsp. lactis Bl-04 8009088 YP_002968558.1 CDS Balac_1140 NC_012814.1 1317754 1318614 R COG0708 Exonuclease III; exodeoxyribonuclease complement(1317754..1318614) Bifidobacterium animalis subsp. lactis Bl-04 8009089 YP_002968559.1 CDS Balac_1141 NC_012814.1 1318788 1319462 D hypothetical protein 1318788..1319462 Bifidobacterium animalis subsp. lactis Bl-04 8009090 YP_002968560.1 CDS Balac_1142 NC_012814.1 1319722 1321785 R COG1123 ATPase components of various ABC-typetransport systems, contain duplicated ATPase; dipeptide transport ATP-binding protein complement(1319722..1321785) Bifidobacterium animalis subsp. lactis Bl-04 8009091 YP_002968561.1 CDS Balac_1143 NC_012814.1 1321782 1322738 R COG1173 ABC-type dipeptide/oligopeptide/nickeltransport systems, permease components; peptide ABC transporter permease complement(1321782..1322738) Bifidobacterium animalis subsp. lactis Bl-04 8009092 YP_002968562.1 CDS Balac_1144 NC_012814.1 1322752 1323678 R COG0601 ABC-type dipeptide/oligopeptide/nickeltransport systems, permease components; dipeptide/oligopeptide/nickel ABC transporter permease complement(1322752..1323678) Bifidobacterium animalis subsp. lactis Bl-04 8009093 YP_002968563.1 CDS Balac_1145 NC_012814.1 1323978 1325618 R COG0747 ABC-type dipeptide transport system, periplasmic component; oligopeptide ABC transporter periplasmic component complement(1323978..1325618) Bifidobacterium animalis subsp. lactis Bl-04 8009094 YP_002968564.1 CDS xerC NC_012814.1 1325895 1326830 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(1325895..1326830) Bifidobacterium animalis subsp. lactis Bl-04 8009095 YP_002968565.1 CDS Balac_1147 NC_012814.1 1327069 1327875 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; putative ABC transporter ATP-binding protein 1327069..1327875 Bifidobacterium animalis subsp. lactis Bl-04 8009096 YP_002968566.1 CDS Balac_1148 NC_012814.1 1327883 1330717 D COG0577 ABC-type antimicrobial peptide transport system, permease component; putative ABC transporter integral membrane protein 1327883..1330717 Bifidobacterium animalis subsp. lactis Bl-04 8009097 YP_002968567.1 CDS Balac_1149 NC_012814.1 1330862 1331113 D hypothetical protein 1330862..1331113 Bifidobacterium animalis subsp. lactis Bl-04 8009098 YP_002968568.1 CDS Balac_1150 NC_012814.1 1331129 1332223 R COG0287 Prephenate dehydrogenase; prephenate dehydrogenase complement(1331129..1332223) Bifidobacterium animalis subsp. lactis Bl-04 8009099 YP_002968569.1 CDS Balac_1151 NC_012814.1 1332232 1333347 R COG0077 Prephenate dehydratase; chorismate mutase complement(1332232..1333347) Bifidobacterium animalis subsp. lactis Bl-04 8009100 YP_002968570.1 CDS Balac_1152 NC_012814.1 1333370 1333879 R hypothetical protein complement(1333370..1333879) Bifidobacterium animalis subsp. lactis Bl-04 8009101 YP_002968571.1 CDS Balac_1153 NC_012814.1 1333989 1335920 R COG1217 Predicted membrane GTPase involved instress response; GTP-binding elongation factor TypA/BipA complement(1333989..1335920) Bifidobacterium animalis subsp. lactis Bl-04 8009102 YP_002968572.1 CDS Balac_1154 NC_012814.1 1336274 1337683 R COG0477 Permeases of the major facilitator superfamily; sugar transporter complement(1336274..1337683) Bifidobacterium animalis subsp. lactis Bl-04 8009103 YP_002968573.1 CDS Balac_1155 NC_012814.1 1337745 1338554 R COG1051 ADP-ribose pyrophosphatase; hypothetical protein complement(1337745..1338554) Bifidobacterium animalis subsp. lactis Bl-04 8009104 YP_002968574.1 CDS Balac_1156 NC_012814.1 1338755 1339603 R COG1192 ATPases involved in chromosome partitioning; hypothetical protein complement(1338755..1339603) Bifidobacterium animalis subsp. lactis Bl-04 8009105 YP_002968575.1 CDS Balac_1157 NC_012814.1 1339707 1340630 R COG4974 Site-specific recombinase XerD; Integrase complement(1339707..1340630) Bifidobacterium animalis subsp. lactis Bl-04 8009106 YP_002968576.1 CDS rplT NC_012814.1 1341022 1341405 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1341022..1341405) Bifidobacterium animalis subsp. lactis Bl-04 8009107 YP_002968577.1 CDS rpmI NC_012814.1 1341455 1341646 R 50S ribosomal protein L35 complement(1341455..1341646) Bifidobacterium animalis subsp. lactis Bl-04 8009108 YP_002968578.1 CDS Balac_1160 NC_012814.1 1341690 1342364 R COG0290 Translation initiation factor 3 (IF-3); translation initiation factor IF-3 complement(1341690..1342364) Bifidobacterium animalis subsp. lactis Bl-04 8009109 YP_002968579.1 CDS Balac_1161 NC_012814.1 1342816 1343622 D COG1564 Thiamine pyrophosphokinase; hypothetical protein 1342816..1343622 Bifidobacterium animalis subsp. lactis Bl-04 8009110 YP_002968580.1 CDS Balac_1162 NC_012814.1 1343853 1344911 D COG0057 Glyceraldehyde-3-phosphatedehydrogenase/erythrose-4- phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 1343853..1344911 Bifidobacterium animalis subsp. lactis Bl-04 8009111 YP_002968581.1 CDS Balac_1163 NC_012814.1 1345334 1345843 D COG2606 Uncharacterized conserved protein; hypothetical protein 1345334..1345843 Bifidobacterium animalis subsp. lactis Bl-04 8009112 YP_002968582.1 CDS ispH NC_012814.1 1346071 1347048 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(1346071..1347048) Bifidobacterium animalis subsp. lactis Bl-04 8009113 YP_002968583.1 CDS Balac_1165 NC_012814.1 1347138 1348130 D COG2017 Galactose mutarotase and related enzymes; hypothetical protein 1347138..1348130 Bifidobacterium animalis subsp. lactis Bl-04 8009114 YP_002968584.1 CDS Balac_1166 NC_012814.1 1348479 1348790 R hypothetical protein complement(1348479..1348790) Bifidobacterium animalis subsp. lactis Bl-04 8009115 YP_002968585.1 CDS Balac_1167 NC_012814.1 1348787 1349530 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(1348787..1349530) Bifidobacterium animalis subsp. lactis Bl-04 8009116 YP_002968586.1 CDS murE NC_012814.1 1349669 1351219 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1349669..1351219 Bifidobacterium animalis subsp. lactis Bl-04 8009117 YP_002968587.1 CDS Balac_1169 NC_012814.1 1351270 1352319 D COG2348 Uncharacterized protein involved in methicillin resistance; hypothetical protein 1351270..1352319 Bifidobacterium animalis subsp. lactis Bl-04 8009118 YP_002968588.1 CDS Balac_1170 NC_012814.1 1352555 1354120 R COG0285 Folylpolyglutamate synthase; folylpolyglutamate synthase complement(1352555..1354120) Bifidobacterium animalis subsp. lactis Bl-04 8009119 YP_002968589.1 CDS Balac_1171 NC_012814.1 1354258 1354881 D COG2197 Response regulator containing a CheY-likereceiver domain and an HTH DNA-binding domain; response regulator 1354258..1354881 Bifidobacterium animalis subsp. lactis Bl-04 8009120 YP_002968590.1 CDS Balac_1172 NC_012814.1 1354883 1356037 D COG4585 Signal transduction histidine kinase; hypothetical protein 1354883..1356037 Bifidobacterium animalis subsp. lactis Bl-04 8009121 YP_002968591.1 CDS Balac_1173 NC_012814.1 1356050 1356841 R hypothetical protein complement(1356050..1356841) Bifidobacterium animalis subsp. lactis Bl-04 8009122 YP_002968592.1 CDS Balac_1174 NC_012814.1 1357070 1358641 D COG0006 Xaa-Pro aminopeptidase; Xaa-Pro aminopeptidase 1357070..1358641 Bifidobacterium animalis subsp. lactis Bl-04 8009123 YP_002968593.1 CDS Balac_1175 NC_012814.1 1358665 1359192 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; hypothetical protein 1358665..1359192 Bifidobacterium animalis subsp. lactis Bl-04 8009124 YP_002968594.1 CDS Balac_1176 NC_012814.1 1359445 1360650 D COG1940 Transcriptional regulator/sugar kinase; ROK family transcriptional regulator 1359445..1360650 Bifidobacterium animalis subsp. lactis Bl-04 8009125 YP_002968595.1 CDS Balac_1177 NC_012814.1 1360713 1361609 D COG0524 Sugar kinases, ribokinase family; 2-dehydro-3-deoxygluconokinase 1360713..1361609 Bifidobacterium animalis subsp. lactis Bl-04 8009126 YP_002968596.1 CDS Balac_1178 NC_012814.1 1361708 1362175 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1361708..1362175 Bifidobacterium animalis subsp. lactis Bl-04 8009127 YP_002968597.1 CDS Balac_1179 NC_012814.1 1362448 1363548 R COG0582 Integrase; phage-related integrase complement(1362448..1363548) Bifidobacterium animalis subsp. lactis Bl-04 8009128 YP_002968598.1 CDS Balac_1180 NC_012814.1 1363761 1364378 R hypothetical protein complement(1363761..1364378) Bifidobacterium animalis subsp. lactis Bl-04 8009129 YP_002968599.1 CDS Balac_1181 NC_012814.1 1364530 1364736 D COG3311 Predicted transcriptional regulator; hypothetical protein 1364530..1364736 Bifidobacterium animalis subsp. lactis Bl-04 8009130 YP_002968600.1 CDS Balac_1182 NC_012814.1 1364751 1364963 D hypothetical protein 1364751..1364963 Bifidobacterium animalis subsp. lactis Bl-04 8009131 YP_002968601.1 CDS Balac_1183 NC_012814.1 1364976 1365212 D hypothetical protein 1364976..1365212 Bifidobacterium animalis subsp. lactis Bl-04 8009132 YP_002968602.1 CDS Balac_1184 NC_012814.1 1365217 1365408 D hypothetical protein 1365217..1365408 Bifidobacterium animalis subsp. lactis Bl-04 8009133 YP_002968603.1 CDS Balac_1185 NC_012814.1 1365396 1365587 D hypothetical protein 1365396..1365587 Bifidobacterium animalis subsp. lactis Bl-04 8009134 YP_002968604.1 CDS Balac_1186 NC_012814.1 1365578 1366780 D COG0305 Replicative DNA helicase; hypothetical protein 1365578..1366780 Bifidobacterium animalis subsp. lactis Bl-04 8009135 YP_002968605.1 CDS Balac_1187 NC_012814.1 1367018 1367290 D hypothetical protein 1367018..1367290 Bifidobacterium animalis subsp. lactis Bl-04 8009136 YP_002968606.1 CDS Balac_1188 NC_012814.1 1367287 1367475 D hypothetical protein 1367287..1367475 Bifidobacterium animalis subsp. lactis Bl-04 8009137 YP_002968607.1 CDS Balac_1189 NC_012814.1 1367498 1367734 D hypothetical protein 1367498..1367734 Bifidobacterium animalis subsp. lactis Bl-04 8009138 YP_002968608.1 CDS Balac_1190 NC_012814.1 1367731 1368048 D hypothetical protein 1367731..1368048 Bifidobacterium animalis subsp. lactis Bl-04 8009139 YP_002968609.1 CDS Balac_1191 NC_012814.1 1368464 1370227 D COG3740 Phage head maturation protease; HK97 family phage prohead protease 1368464..1370227 Bifidobacterium animalis subsp. lactis Bl-04 8009140 YP_002968610.1 CDS Balac_1192 NC_012814.1 1370239 1370460 D hypothetical protein 1370239..1370460 Bifidobacterium animalis subsp. lactis Bl-04 8009141 YP_002968611.1 CDS Balac_1193 NC_012814.1 1371202 1372932 R COG1123 ATPase components of various ABC-typetransport systems, contain duplicated ATPase; peptide ABC transporter ATPase complement(1371202..1372932) Bifidobacterium animalis subsp. lactis Bl-04 8009142 YP_002968612.1 CDS Balac_1194 NC_012814.1 1372922 1374109 R COG1173 ABC-type dipeptide/oligopeptide/nickeltransport systems, permease components; peptide ABC transporter permease complement(1372922..1374109) Bifidobacterium animalis subsp. lactis Bl-04 8009143 YP_002968613.1 CDS Balac_1195 NC_012814.1 1374141 1375232 R COG0601 ABC-type dipeptide/oligopeptide/nickeltransport systems, permease components; dipeptide/oligopeptide/nickel ABC transporter permease complement(1374141..1375232) Bifidobacterium animalis subsp. lactis Bl-04 8009144 YP_002968614.1 CDS Balac_1196 NC_012814.1 1377194 1378447 R COG1589 Cell division septal protein; cell division protein complement(1377194..1378447) Bifidobacterium animalis subsp. lactis Bl-04 8009145 YP_002968615.1 CDS Balac_1197 NC_012814.1 1378608 1380149 R COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase complement(1378608..1380149) Bifidobacterium animalis subsp. lactis Bl-04 8009146 YP_002968616.1 CDS murG NC_012814.1 1380190 1381374 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase complement(1380190..1381374) Bifidobacterium animalis subsp. lactis Bl-04 8009147 YP_002968617.1 CDS Balac_1199 NC_012814.1 1381429 1382811 R COG0772 Bacterial cell division membrane protein; FtsW-like protein complement(1381429..1382811) Bifidobacterium animalis subsp. lactis Bl-04 8009148 YP_002968618.1 CDS Balac_1200 NC_012814.1 1382792 1384237 R COG0771 UDP-N-acetylmuramoylalanine-D-glutamateligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(1382792..1384237) Bifidobacterium animalis subsp. lactis Bl-04 8009149 YP_002968619.1 CDS mraY NC_012814.1 1384339 1385445 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(1384339..1385445) Bifidobacterium animalis subsp. lactis Bl-04 8009150 YP_002968620.1 CDS Balac_1202 NC_012814.1 1385497 1386987 R COG0770 UDP-N-acetylmuramyl pentapeptide synthase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(1385497..1386987) Bifidobacterium animalis subsp. lactis Bl-04 8009151 YP_002968621.1 CDS Balac_1203 NC_012814.1 1387025 1387906 R COG0769 UDP-N-acetylmuramyl tripeptide synthase; hypothetical protein complement(1387025..1387906) Bifidobacterium animalis subsp. lactis Bl-04 8009152 YP_002968622.1 CDS Balac_1204 NC_012814.1 1387921 1389717 R COG0768 Cell division proteinFtsI/ penicillin-binding protein 2; peptidoglycan synthetase; penicillin-binding protein 3 complement(1387921..1389717) Bifidobacterium animalis subsp. lactis Bl-04 8009153 YP_002968623.1 CDS Balac_1205 NC_012814.1 1389714 1390244 R hypothetical protein complement(1389714..1390244) Bifidobacterium animalis subsp. lactis Bl-04 8009154 YP_002968624.1 CDS mraW NC_012814.1 1390246 1391307 R COG0275 Predicted S-adenosylmethionine-dependentmethyltransferase involved in cell envelope biogenesis; S-adenosyl-methyltransferase MraW complement(1390246..1391307) Bifidobacterium animalis subsp. lactis Bl-04 8009155 YP_002968625.1 CDS Balac_1207 NC_012814.1 1391307 1391792 R COG2001 Uncharacterized protein conserved in bacteria; protein mraZ complement(1391307..1391792) Bifidobacterium animalis subsp. lactis Bl-04 8009156 YP_002968626.1 CDS Balac_1208 NC_012814.1 1392146 1394407 D COG3973 Superfamily I DNA and RNA helicases; hypothetical protein 1392146..1394407 Bifidobacterium animalis subsp. lactis Bl-04 8009157 YP_002968627.1 CDS Balac_1209 NC_012814.1 1394436 1395620 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1394436..1395620 Bifidobacterium animalis subsp. lactis Bl-04 8009158 YP_002968628.1 CDS Balac_1210 NC_012814.1 1395677 1396123 R COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains; transcriptional regulator NrdR complement(1395677..1396123) Bifidobacterium animalis subsp. lactis Bl-04 8009159 YP_002968629.1 CDS Balac_1211 NC_012814.1 1396218 1396649 R COG1388 FOG: LysM repeat; hypothetical protein complement(1396218..1396649) Bifidobacterium animalis subsp. lactis Bl-04 8009160 YP_002968630.1 CDS Balac_1212 NC_012814.1 1396706 1397401 D Represses a number of genes involved in the response to DNA damage; LexA repressor 1396706..1397401 Bifidobacterium animalis subsp. lactis Bl-04 8009161 YP_002968631.1 CDS Balac_1213 NC_012814.1 1397784 1398716 R COG1230 Co/Zn/Cd efflux system component; cation efflux protein complement(1397784..1398716) Bifidobacterium animalis subsp. lactis Bl-04 8009162 YP_002968632.1 CDS Balac_1214 NC_012814.1 1398830 1399792 R COG0039 Malate/lactate dehydrogenases; L-lactate dehydrogenase 2 complement(1398830..1399792) Bifidobacterium animalis subsp. lactis Bl-04 8009163 YP_002968633.1 CDS Balac_1215 NC_012814.1 1399967 1401514 R COG2262 GTPases; GTP-binding protein complement(1399967..1401514) Bifidobacterium animalis subsp. lactis Bl-04 8009164 YP_002968634.1 CDS Balac_1216 NC_012814.1 1401618 1402247 D COG2813 16S RNA G1207 methylase RsmC; hypothetical protein 1401618..1402247 Bifidobacterium animalis subsp. lactis Bl-04 8009165 YP_002968635.1 CDS Balac_1217 NC_012814.1 1402291 1406337 D COG1643 HrpA-like helicases; ATP-dependent helicase 1402291..1406337 Bifidobacterium animalis subsp. lactis Bl-04 8009166 YP_002968636.1 CDS Balac_1218 NC_012814.1 1406431 1407768 R COG0174 Glutamine synthetase; glutamine synthetase 2 complement(1406431..1407768) Bifidobacterium animalis subsp. lactis Bl-04 8009167 YP_002968637.1 CDS Balac_1219 NC_012814.1 1407949 1409352 D COG4320 Uncharacterized protein conserved in bacteria; hypothetical protein 1407949..1409352 Bifidobacterium animalis subsp. lactis Bl-04 8009168 YP_002968638.1 CDS Balac_1220 NC_012814.1 1409472 1410200 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis; phosphoribosyl isomerase A complement(1409472..1410200) Bifidobacterium animalis subsp. lactis Bl-04 8009169 YP_002968639.1 CDS hisH NC_012814.1 1410248 1410895 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(1410248..1410895) Bifidobacterium animalis subsp. lactis Bl-04 8009170 YP_002968640.1 CDS Balac_1222 NC_012814.1 1410926 1411675 R hypothetical protein complement(1410926..1411675) Bifidobacterium animalis subsp. lactis Bl-04 8009171 YP_002968641.1 CDS hisB NC_012814.1 1411675 1412277 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(1411675..1412277) Bifidobacterium animalis subsp. lactis Bl-04 8009172 YP_002968642.1 CDS Balac_1224 NC_012814.1 1412320 1413486 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(1412320..1413486) Bifidobacterium animalis subsp. lactis Bl-04 8009173 YP_002968643.1 CDS hisD NC_012814.1 1413483 1414865 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(1413483..1414865) Bifidobacterium animalis subsp. lactis Bl-04 8009174 YP_002968644.1 CDS dnaE NC_012814.1 1415165 1418731 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(1415165..1418731) Bifidobacterium animalis subsp. lactis Bl-04 8009175 YP_002968645.1 CDS Balac_1227 NC_012814.1 1418933 1419238 D hypothetical protein 1418933..1419238 Bifidobacterium animalis subsp. lactis Bl-04 8009176 YP_002968646.1 CDS Balac_1228 NC_012814.1 1419218 1420171 R COG0564 Pseudouridylate synthases, 23SRNA-specific; hypothetical protein complement(1419218..1420171) Bifidobacterium animalis subsp. lactis Bl-04 8009177 YP_002968647.1 CDS Balac_1229 NC_012814.1 1420190 1420696 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(1420190..1420696) Bifidobacterium animalis subsp. lactis Bl-04 8009178 YP_002968648.1 CDS Balac_1230 NC_012814.1 1420745 1422211 R COG3599 Cell division initiation protein; hypothetical protein complement(1420745..1422211) Bifidobacterium animalis subsp. lactis Bl-04 8009179 YP_002968649.1 CDS Balac_1231 NC_012814.1 1422388 1422678 R COG0762 Predicted integral membrane protein; hypothetical protein complement(1422388..1422678) Bifidobacterium animalis subsp. lactis Bl-04 8009180 YP_002968650.1 CDS Balac_1232 NC_012814.1 1422760 1423230 R COG1799 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1422760..1423230) Bifidobacterium animalis subsp. lactis Bl-04 8009181 YP_002968651.1 CDS Balac_1233 NC_012814.1 1423319 1424575 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(1423319..1424575) Bifidobacterium animalis subsp. lactis Bl-04 8009182 YP_002968652.1 CDS Balac_1234 NC_012814.1 1424736 1425989 R COG0042 tRNA-dihydrouridine synthase; NifR3-like protein complement(1424736..1425989) Bifidobacterium animalis subsp. lactis Bl-04 8009183 YP_002968653.1 CDS Balac_1235 NC_012814.1 1426120 1427595 R Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase complement(1426120..1427595) Bifidobacterium animalis subsp. lactis Bl-04 8009184 YP_002968654.1 CDS Balac_1236 NC_012814.1 1427837 1428748 D COG2145 Hydroxyethylthiazole kinase, sugar kinase family; hydroxyethylthiazole kinase 1427837..1428748 Bifidobacterium animalis subsp. lactis Bl-04 8009185 YP_002968655.1 CDS Balac_1237 NC_012814.1 1428801 1430351 D COG0352 Thiamine monophosphate synthase; phosphomethylpyrimidine kinase 1428801..1430351 Bifidobacterium animalis subsp. lactis Bl-04 8009186 YP_002968656.1 CDS Balac_1238 NC_012814.1 1430440 1430808 D COG0011 Uncharacterized conserved protein; hypothetical protein 1430440..1430808 Bifidobacterium animalis subsp. lactis Bl-04 8009187 YP_002968657.1 CDS Balac_1239 NC_012814.1 1430882 1431940 D COG1609 Transcriptional regulators; LacI-type transcriptional regulator 1430882..1431940 Bifidobacterium animalis subsp. lactis Bl-04 8009188 YP_002968658.1 CDS lacY NC_012814.1 1432238 1433563 D lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments; galactoside permease 1432238..1433563 Bifidobacterium animalis subsp. lactis Bl-04 8009189 YP_002968659.1 CDS Balac_1241 NC_012814.1 1433814 1435412 D COG1621 Beta-fructosidases (levanase/invertase); Sucrose-6-phosphate hydrolase 1433814..1435412 Bifidobacterium animalis subsp. lactis Bl-04 8009190 YP_002968660.1 CDS Balac_1242 NC_012814.1 1435631 1436443 D COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; ABC transporter permease 1435631..1436443 Bifidobacterium animalis subsp. lactis Bl-04 8009191 YP_002968661.1 CDS Balac_1243 NC_012814.1 1436488 1437570 D COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components; ABC transporter substrate-binding protein 1436488..1437570 Bifidobacterium animalis subsp. lactis Bl-04 8009192 YP_002968662.1 CDS Balac_1244 NC_012814.1 1437622 1438857 D COG1957 Inosine-uridine nucleoside N-ribohydrolase; Inosine-uridine nucleoside N-ribohydrolase 1437622..1438857 Bifidobacterium animalis subsp. lactis Bl-04 8009193 YP_002968663.1 CDS Balac_1245 NC_012814.1 1438863 1439036 R hypothetical protein complement(1438863..1439036) Bifidobacterium animalis subsp. lactis Bl-04 8009194 YP_002968664.1 CDS Balac_1246 NC_012814.1 1439243 1440034 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; UDP pyrophosphate synthase complement(1439243..1440034) Bifidobacterium animalis subsp. lactis Bl-04 8009195 YP_002968665.1 CDS recO NC_012814.1 1440039 1440758 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(1440039..1440758) Bifidobacterium animalis subsp. lactis Bl-04 8009196 YP_002968666.1 CDS Balac_1248 NC_012814.1 1440771 1442489 R COG1073 Hydrolases of the alpha/beta superfamily; hypothetical protein complement(1440771..1442489) Bifidobacterium animalis subsp. lactis Bl-04 8009197 YP_002968667.1 CDS ispG NC_012814.1 1442505 1443707 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(1442505..1443707) Bifidobacterium animalis subsp. lactis Bl-04 8009198 YP_002968668.1 CDS Balac_1250 NC_012814.1 1443828 1445018 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(1443828..1445018) Bifidobacterium animalis subsp. lactis Bl-04 8009199 YP_002968669.1 CDS Balac_1251 NC_012814.1 1445071 1446672 R hypothetical protein complement(1445071..1446672) Bifidobacterium animalis subsp. lactis Bl-04 8009200 YP_002968670.1 CDS Balac_1253 NC_012814.1 1447042 1447533 D COG1196 Chromosome segregation ATPases; hypothetical protein 1447042..1447533 Bifidobacterium animalis subsp. lactis Bl-04 8009600 YP_002968671.1 CDS Balac_1254 NC_012814.1 1447656 1448072 R COG2303 Choline dehydrogenase and related flavoproteins; hypothetical protein complement(1447656..1448072) Bifidobacterium animalis subsp. lactis Bl-04 8009202 YP_002968672.1 CDS Balac_1255 NC_012814.1 1448178 1449134 R COG3480 Predicted secreted protein containing a PDZ domain; hypothetical protein complement(1448178..1449134) Bifidobacterium animalis subsp. lactis Bl-04 8009203 YP_002968673.1 CDS Balac_1256 NC_012814.1 1449239 1450897 D COG5282 Uncharacterized conserved protein; hypothetical protein 1449239..1450897 Bifidobacterium animalis subsp. lactis Bl-04 8009204 YP_002968674.1 CDS Balac_1257 NC_012814.1 1450983 1452572 R COG0210 Superfamily I DNA and RNA helicases; DNA helicase II complement(1450983..1452572) Bifidobacterium animalis subsp. lactis Bl-04 8009205 YP_002968675.1 CDS Balac_1258 NC_012814.1 1452740 1454221 D COG3173 Predicted aminoglycosidephosphotransferase; hypothetical protein 1452740..1454221 Bifidobacterium animalis subsp. lactis Bl-04 8009206 YP_002968676.1 CDS Balac_1259 NC_012814.1 1454339 1454566 D hypothetical protein 1454339..1454566 Bifidobacterium animalis subsp. lactis Bl-04 8009207 YP_002968677.1 CDS Balac_1260 NC_012814.1 1454657 1455541 R COG0613 Predicted metal-dependent phosphoesterases (PHP family); hypothetical protein complement(1454657..1455541) Bifidobacterium animalis subsp. lactis Bl-04 8009208 YP_002968678.1 CDS Balac_1261 NC_012814.1 1455717 1456385 D COG4243 Predicted membrane protein; hypothetical protein 1455717..1456385 Bifidobacterium animalis subsp. lactis Bl-04 8009209 YP_002968679.1 CDS Balac_1262 NC_012814.1 1456410 1457294 R COG0253 Diaminopimelate epimerase; diaminopimelate epimerase complement(1456410..1457294) Bifidobacterium animalis subsp. lactis Bl-04 8009210 YP_002968680.1 CDS Balac_1263 NC_012814.1 1457434 1458210 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1457434..1458210 Bifidobacterium animalis subsp. lactis Bl-04 8009211 YP_002968681.1 CDS Balac_1264 NC_012814.1 1458260 1459117 D COG4667 Predicted esterase of the alpha-betahydrolase superfamily; hypothetical protein 1458260..1459117 Bifidobacterium animalis subsp. lactis Bl-04 8009212 YP_002968682.1 CDS Balac_1265 NC_012814.1 1459193 1460101 R COG0330 Membrane protease subunits, stomatin/prohibitin homologs; hypothetical protein complement(1459193..1460101) Bifidobacterium animalis subsp. lactis Bl-04 8009213 YP_002968683.1 CDS Balac_1266 NC_012814.1 1460333 1461241 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter substrate-binding protein complement(1460333..1461241) Bifidobacterium animalis subsp. lactis Bl-04 8009214 YP_002968684.1 CDS Balac_1267 NC_012814.1 1461290 1462183 R COG1126 ABC-type polar amino acid transport system, ATPase component; glutamate/aspartate ABC transporter ATP binding protein complement(1461290..1462183) Bifidobacterium animalis subsp. lactis Bl-04 8009215 YP_002968685.1 CDS Balac_1268 NC_012814.1 1462176 1462850 R COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter permease complement(1462176..1462850) Bifidobacterium animalis subsp. lactis Bl-04 8009216 YP_002968686.1 CDS Balac_1269 NC_012814.1 1462837 1463493 R COG0765 ABC-type amino acid transport system, permease component; ABC transporter permease complement(1462837..1463493) Bifidobacterium animalis subsp. lactis Bl-04 8009217 YP_002968687.1 CDS Balac_1270 NC_012814.1 1463665 1464849 R COG0436 Aspartate/tyrosine/aromatic aminotransferase; transaminase complement(1463665..1464849) Bifidobacterium animalis subsp. lactis Bl-04 8009218 YP_002968688.1 CDS Balac_1271 NC_012814.1 1465082 1465741 R COG2011 ABC-type metal ion transport system, permease component; metal ion ABC transporter permease complement(1465082..1465741) Bifidobacterium animalis subsp. lactis Bl-04 8009219 YP_002968689.1 CDS Balac_1272 NC_012814.1 1465738 1466922 R COG1135 ABC-type metal ion transport system, ATPase component; ABC transporter ATP-binding protein complement(1465738..1466922) Bifidobacterium animalis subsp. lactis Bl-04 8009220 YP_002968690.1 CDS Balac_1273 NC_012814.1 1466974 1467870 R COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; NLPA lipoprotein complement(1466974..1467870) Bifidobacterium animalis subsp. lactis Bl-04 8009221 YP_002968691.1 CDS Balac_1274 NC_012814.1 1467985 1468995 R COG1893 Ketopantoate reductase; 2-dehydropantoate 2-reductase complement(1467985..1468995) Bifidobacterium animalis subsp. lactis Bl-04 8009222 YP_002968692.1 CDS Balac_1275 NC_012814.1 1469347 1470006 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 1469347..1470006 Bifidobacterium animalis subsp. lactis Bl-04 8009223 YP_002968693.1 CDS Balac_1276 NC_012814.1 1470260 1470826 D COG2176 DNA polymerase III, alpha subunit (gram-positive type); DNA polymerase III subunit alpha 1470260..1470826 Bifidobacterium animalis subsp. lactis Bl-04 8009224 YP_002968694.1 CDS Balac_1282 NC_012814.1 1477781 1479751 R COG0480 Translation elongation factors (GTPases); translation elongation factor complement(1477781..1479751) Bifidobacterium animalis subsp. lactis Bl-04 8009605 YP_002968695.1 CDS Balac_1283 NC_012814.1 1479781 1481316 R COG0531 Amino acid transporters; putative arginine/ornithine antiporter complement(1479781..1481316) Bifidobacterium animalis subsp. lactis Bl-04 8009226 YP_002968696.1 CDS Balac_1284 NC_012814.1 1481419 1482048 R hypothetical protein complement(1481419..1482048) Bifidobacterium animalis subsp. lactis Bl-04 8009227 YP_002968697.1 CDS Balac_1285 NC_012814.1 1482193 1482411 R hypothetical protein complement(1482193..1482411) Bifidobacterium animalis subsp. lactis Bl-04 8009228 YP_002968698.1 CDS Balac_1286 NC_012814.1 1482712 1484382 D COG4166 ABC-type oligopeptide transport system, periplasmic component; ABC transporter 1482712..1484382 Bifidobacterium animalis subsp. lactis Bl-04 8009229 YP_002968699.1 CDS Balac_1287 NC_012814.1 1484389 1485846 D COG0477 Permeases of the major facilitator superfamily; hypothetical protein 1484389..1485846 Bifidobacterium animalis subsp. lactis Bl-04 8009230 YP_002968700.1 CDS Balac_1288 NC_012814.1 1485953 1486651 R COG1842 Phage shock protein A (IM30, suppresses sigma54-dependent transcription); phage shock protein A-like protein complement(1485953..1486651) Bifidobacterium animalis subsp. lactis Bl-04 8009231 YP_002968701.1 CDS Balac_1289 NC_012814.1 1486654 1487889 R hypothetical protein complement(1486654..1487889) Bifidobacterium animalis subsp. lactis Bl-04 8009232 YP_002968702.1 CDS Balac_1290 NC_012814.1 1488062 1488283 R hypothetical protein complement(1488062..1488283) Bifidobacterium animalis subsp. lactis Bl-04 8009233 YP_002968703.1 CDS ileS NC_012814.1 1488518 1491841 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase complement(1488518..1491841) Bifidobacterium animalis subsp. lactis Bl-04 8009234 YP_002968704.1 CDS Balac_1292 NC_012814.1 1492283 1492450 R hypothetical protein complement(1492283..1492450) Bifidobacterium animalis subsp. lactis Bl-04 8009235 YP_002968705.1 CDS Balac_1293 NC_012814.1 1492633 1493403 R COG2365 Protein tyrosine/serine phosphatase; putative serine/tyrosine protein phosphatase complement(1492633..1493403) Bifidobacterium animalis subsp. lactis Bl-04 8009236 YP_002968706.1 CDS Balac_1294 NC_012814.1 1493431 1493721 R hypothetical protein complement(1493431..1493721) Bifidobacterium animalis subsp. lactis Bl-04 8009237 YP_002968707.1 CDS Balac_1295 NC_012814.1 1493960 1494172 R hypothetical protein complement(1493960..1494172) Bifidobacterium animalis subsp. lactis Bl-04 8009238 YP_002968708.1 CDS Balac_1296 NC_012814.1 1494331 1496409 R COG1132 ABC-type multidrug transport system, ATPase and permease components; ABC transporter complement(1494331..1496409) Bifidobacterium animalis subsp. lactis Bl-04 8009239 YP_002968709.1 CDS Balac_1297 NC_012814.1 1496406 1498379 R COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter ATPase and permease complement(1496406..1498379) Bifidobacterium animalis subsp. lactis Bl-04 8009240 YP_002968710.1 CDS Balac_1298 NC_012814.1 1498376 1498927 R COG1846 Transcriptional regulators; MarR family transcriptional regulator complement(1498376..1498927) Bifidobacterium animalis subsp. lactis Bl-04 8009241 YP_002968711.1 CDS Balac_1299 NC_012814.1 1499185 1499751 R COG0431 Predicted flavoprotein; NADPH-dependent reductase complement(1499185..1499751) Bifidobacterium animalis subsp. lactis Bl-04 8009242 YP_002968712.1 CDS Balac_1300 NC_012814.1 1499994 1500377 D COG3727 DNA G:T-mismatch repair endonuclease; Vsr endonuclease 1499994..1500377 Bifidobacterium animalis subsp. lactis Bl-04 8009243 YP_002968713.1 CDS Balac_1301 NC_012814.1 1501408 1501596 D hypothetical protein 1501408..1501596 Bifidobacterium animalis subsp. lactis Bl-04 8009244 YP_002968714.1 CDS Balac_1302 NC_012814.1 1501959 1502219 D hypothetical protein 1501959..1502219 Bifidobacterium animalis subsp. lactis Bl-04 8009245 YP_002968715.1 CDS csb3 NC_012814.1 1502290 1503336 R putative CRISPR-associated Csb3 family protein complement(1502290..1503336) Bifidobacterium animalis subsp. lactis Bl-04 8009246 YP_002968716.1 CDS cas3 NC_012814.1 1503340 1506393 R COG1196 Chromosome segregation ATPases; CRISPR-associated helicase Cas3 family protein complement(1503340..1506393) Bifidobacterium animalis subsp. lactis Bl-04 8009247 YP_002968717.1 CDS csb2 NC_012814.1 1506384 1508021 R putative CRISPR-associated Csb2 family protein complement(1506384..1508021) Bifidobacterium animalis subsp. lactis Bl-04 8009248 YP_002968718.1 CDS csb1 NC_012814.1 1508040 1509233 R putative CRISPR-associated Csb1 family protein complement(1508040..1509233) Bifidobacterium animalis subsp. lactis Bl-04 8009249 YP_002968719.1 CDS cas2 NC_012814.1 1509650 1509943 R COG1343 Uncharacterized protein predicted to beinvolved in DNA repair; CRISPR-associated Cas2 family protein complement(1509650..1509943) Bifidobacterium animalis subsp. lactis Bl-04 8009250 YP_002968720.1 CDS cas1 NC_012814.1 1509955 1511445 R COG1518; COG1468 RecB family exonuclease/transl_table; CRISPR-associated Cas1/Cas4 family protein complement(1509955..1511445) Bifidobacterium animalis subsp. lactis Bl-04 8009251 YP_002968721.1 CDS Balac_1309 NC_012814.1 1513413 1514564 R COG3572 Gamma-glutamylcysteine synthetase; Gamma-glutamylcysteine synthetase complement(1513413..1514564) Bifidobacterium animalis subsp. lactis Bl-04 8009252 YP_002968722.1 CDS Balac_1310 NC_012814.1 1514758 1519476 R COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain); hypothetical protein complement(1514758..1519476) Bifidobacterium animalis subsp. lactis Bl-04 8009253 YP_002968723.1 CDS Balac_1311 NC_012814.1 1519726 1520295 D COG3548 Predicted integral membrane protein; hypothetical protein 1519726..1520295 Bifidobacterium animalis subsp. lactis Bl-04 8009254 YP_002968724.1 CDS Balac_1312 NC_012814.1 1520292 1520693 D COG3759 Predicted membrane protein; transmembrane protein 1520292..1520693 Bifidobacterium animalis subsp. lactis Bl-04 8009255 YP_002968725.1 CDS Balac_1313 NC_012814.1 1520956 1521645 D hypothetical protein 1520956..1521645 Bifidobacterium animalis subsp. lactis Bl-04 8009256 YP_002968726.1 CDS Balac_1314 NC_012814.1 1521642 1522391 R COG0602 Organic radical activating enzymes; anaerobic ribonucleoside-triphosphate reductase activating protein complement(1521642..1522391) Bifidobacterium animalis subsp. lactis Bl-04 8009257 YP_002968727.1 CDS Balac_1315 NC_012814.1 1522733 1525159 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(1522733..1525159) Bifidobacterium animalis subsp. lactis Bl-04 8009258 YP_002968728.1 CDS xseA NC_012814.1 1525516 1526814 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1525516..1526814 Bifidobacterium animalis subsp. lactis Bl-04 8009259 YP_002968729.1 CDS Balac_1317 NC_012814.1 1526858 1527175 D COG1722 Exonuclease VII small subunit; exonuclease VII small subunit 1526858..1527175 Bifidobacterium animalis subsp. lactis Bl-04 8009260 YP_002968730.1 CDS Balac_1318 NC_012814.1 1527176 1528201 R COG3021 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1527176..1528201) Bifidobacterium animalis subsp. lactis Bl-04 8009261 YP_002968731.1 CDS Balac_1320 NC_012814.1 1528554 1529282 D hypothetical protein 1528554..1529282 Bifidobacterium animalis subsp. lactis Bl-04 8009606 YP_002968732.1 CDS Balac_1321 NC_012814.1 1529298 1530527 R COG0436 Aspartate/tyrosine/aromatic aminotransferase; aspartate aminotransferase complement(1529298..1530527) Bifidobacterium animalis subsp. lactis Bl-04 8009263 YP_002968733.1 CDS Balac_1322 NC_012814.1 1530553 1531086 R COG3727 DNA G:T-mismatch repair endonuclease; XorII very-short-patch-repair endonuclease complement(1530553..1531086) Bifidobacterium animalis subsp. lactis Bl-04 8009264 YP_002968734.1 CDS Balac_1323 NC_012814.1 1531203 1532771 D hypothetical protein 1531203..1532771 Bifidobacterium animalis subsp. lactis Bl-04 8009265 YP_002968735.1 CDS Balac_1324 NC_012814.1 1532805 1534190 R COG0847 DNA polymerase III, epsilon subunit and related 3-5 exonucleases; DNA polymerase III subunit epsilon complement(1532805..1534190) Bifidobacterium animalis subsp. lactis Bl-04 8009266 YP_002968736.1 CDS def NC_012814.1 1534328 1534981 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1534328..1534981) Bifidobacterium animalis subsp. lactis Bl-04 8009267 YP_002968737.1 CDS glmM NC_012814.1 1535019 1536389 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(1535019..1536389) Bifidobacterium animalis subsp. lactis Bl-04 8009268 YP_002968738.1 CDS Balac_1327 NC_012814.1 1536848 1539472 R COG0308 Aminopeptidase N; aminopeptidase complement(1536848..1539472) Bifidobacterium animalis subsp. lactis Bl-04 8009269 YP_002968739.1 CDS Balac_1328 NC_012814.1 1539629 1541536 R COG0595 Predicted hydrolase of themetallo-beta-lactamase superfamily; hypothetical protein complement(1539629..1541536) Bifidobacterium animalis subsp. lactis Bl-04 8009270 YP_002968740.1 CDS Balac_1329 NC_012814.1 1541637 1542533 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(1541637..1542533) Bifidobacterium animalis subsp. lactis Bl-04 8009271 YP_002968741.1 CDS Balac_1330 NC_012814.1 1542594 1543355 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(1542594..1543355) Bifidobacterium animalis subsp. lactis Bl-04 8009272 YP_002968742.1 CDS Balac_1331 NC_012814.1 1543411 1544829 R COG0477 Permeases of the major facilitator superfamily; transport protein complement(1543411..1544829) Bifidobacterium animalis subsp. lactis Bl-04 8009273 YP_002968743.1 CDS Balac_1332 NC_012814.1 1544826 1545536 R COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; N-acetylglutamate synthase complement(1544826..1545536) Bifidobacterium animalis subsp. lactis Bl-04 8009274 YP_002968744.1 CDS Balac_1333 NC_012814.1 1545759 1549895 R COG0210 Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase complement(1545759..1549895) Bifidobacterium animalis subsp. lactis Bl-04 8009275 YP_002968745.1 CDS Balac_1334 NC_012814.1 1549908 1554461 R COG0210 Superfamily I DNA and RNA helicases; hypothetical protein complement(1549908..1554461) Bifidobacterium animalis subsp. lactis Bl-04 8009276 YP_002968746.1 CDS Balac_1335 NC_012814.1 1554796 1556199 D COG0515 Serine/threonine protein kinase; Serine/threonine protein kinase 1554796..1556199 Bifidobacterium animalis subsp. lactis Bl-04 8009277 YP_002968747.1 CDS Balac_1336 NC_012814.1 1556206 1562127 D COG2931 RTX toxins and related Ca2+-binding proteins; fibronectin type III 1556206..1562127 Bifidobacterium animalis subsp. lactis Bl-04 8009278 YP_002968748.1 CDS Balac_1337 NC_012814.1 1562111 1563349 D COG0714 MoxR-like ATPases; methanol dehydrogenase regulatory protein 1562111..1563349 Bifidobacterium animalis subsp. lactis Bl-04 8009279 YP_002968749.1 CDS Balac_1338 NC_012814.1 1563336 1564529 D COG1721 Uncharacterized conserved protein (somemembers contain a von Willebrand factor type A (vWAdomain)); hypothetical protein 1563336..1564529 Bifidobacterium animalis subsp. lactis Bl-04 8009280 YP_002968750.1 CDS Balac_1339 NC_012814.1 1564526 1567015 D COG1305 Transglutaminase-like enzymes, putative cysteine proteases; hypothetical protein 1564526..1567015 Bifidobacterium animalis subsp. lactis Bl-04 8009281 YP_002968751.1 CDS Balac_1340 NC_012814.1 1567282 1567929 D hypothetical protein 1567282..1567929 Bifidobacterium animalis subsp. lactis Bl-04 8009282 YP_002968752.1 CDS Balac_1341 NC_012814.1 1567944 1568570 R COG1716 FOG: FHA domain; hypothetical protein complement(1567944..1568570) Bifidobacterium animalis subsp. lactis Bl-04 8009283 YP_002968753.1 CDS Balac_1342 NC_012814.1 1568690 1572727 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(1568690..1572727) Bifidobacterium animalis subsp. lactis Bl-04 8009284 YP_002968754.1 CDS rpoB NC_012814.1 1572788 1576348 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(1572788..1576348) Bifidobacterium animalis subsp. lactis Bl-04 8009285 YP_002968755.1 CDS Balac_1344 NC_012814.1 1576582 1577247 R hypothetical protein complement(1576582..1577247) Bifidobacterium animalis subsp. lactis Bl-04 8009286 YP_002968756.1 CDS Balac_1345 NC_012814.1 1577564 1578553 R COG1194 A/G-specific DNA glycosylase; A/G-specific adenine glycosylase complement(1577564..1578553) Bifidobacterium animalis subsp. lactis Bl-04 8009287 YP_002968757.1 CDS Balac_1346 NC_012814.1 1578627 1579298 D COG0219 Predicted rRNA methylase (SpoU class)); hypothetical protein 1578627..1579298 Bifidobacterium animalis subsp. lactis Bl-04 8009288 YP_002968758.1 CDS Balac_1347 NC_012814.1 1579423 1580787 R COG2848 Uncharacterized conserved protein; hypothetical protein complement(1579423..1580787) Bifidobacterium animalis subsp. lactis Bl-04 8009289 YP_002968759.1 CDS Balac_1348 NC_012814.1 1580832 1581104 R ACT domain-containing protein; hypothetical protein complement(1580832..1581104) Bifidobacterium animalis subsp. lactis Bl-04 8009290 YP_002968760.1 CDS srtB NC_012814.1 1581229 1582077 R COG3764 Sortase (surface protein transpeptidase); sortase family protein complement(1581229..1582077) Bifidobacterium animalis subsp. lactis Bl-04 8009291 YP_002968761.1 CDS Balac_1350 NC_012814.1 1582100 1582192 R hypothetical protein complement(1582100..1582192) Bifidobacterium animalis subsp. lactis Bl-04 8009292 YP_002968762.1 CDS Balac_1351 NC_012814.1 1582358 1583608 R COG0153 Galactokinase; galactokinase complement(1582358..1583608) Bifidobacterium animalis subsp. lactis Bl-04 8009293 YP_002968763.1 CDS Balac_1352 NC_012814.1 1583675 1584955 R COG1085 Galactose-1-phosphate uridylyltransferase; Galactose-1-phosphate uridylyltransferase complement(1583675..1584955) Bifidobacterium animalis subsp. lactis Bl-04 8009294 YP_002968764.1 CDS Balac_1353 NC_012814.1 1584955 1585776 R COG1349 Transcriptional regulators of sugar metabolism; DeoR-type transcriptional regulator complement(1584955..1585776) Bifidobacterium animalis subsp. lactis Bl-04 8009295 YP_002968765.1 CDS Balac_1354 NC_012814.1 1585894 1586925 R COG0463 Glycosyltransferases involved in cell wall biogenesis; dolichyl-phosphate beta-D-mannosyltransferase complement(1585894..1586925) Bifidobacterium animalis subsp. lactis Bl-04 8009296 YP_002968766.1 CDS Balac_1355 NC_012814.1 1587088 1588248 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1587088..1588248 Bifidobacterium animalis subsp. lactis Bl-04 8009297 YP_002968767.1 CDS Balac_1356 NC_012814.1 1588547 1589677 R COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family; NADH-dependent flavin oxidoreductase YqjM complement(1588547..1589677) Bifidobacterium animalis subsp. lactis Bl-04 8009298 YP_002968768.1 CDS Balac_1357 NC_012814.1 1589970 1592174 R COG0744 Membrane carboxypeptidase (penicillin-binding protein); membrane carboxypeptidase complement(1589970..1592174) Bifidobacterium animalis subsp. lactis Bl-04 8009299 YP_002968769.1 CDS Balac_1358 NC_012814.1 1592305 1593066 R COG0664 cAMP-binding proteins - catabolite geneactivator and regulatory subunit of cAMP-dependent protein kinases; transcriptional regulator complement(1592305..1593066) Bifidobacterium animalis subsp. lactis Bl-04 8009300 YP_002968770.1 CDS Balac_1359 NC_012814.1 1593106 1594269 R COG0095 Lipoate-protein ligase A; lipoate protein ligase complement(1593106..1594269) Bifidobacterium animalis subsp. lactis Bl-04 8009301 YP_002968771.1 CDS Balac_1360 NC_012814.1 1594366 1594830 R COG2314 Predicted membrane protein; hypothetical protein complement(1594366..1594830) Bifidobacterium animalis subsp. lactis Bl-04 8009302 YP_002968772.1 CDS Balac_1361 NC_012814.1 1595202 1595336 R hypothetical protein complement(1595202..1595336) Bifidobacterium animalis subsp. lactis Bl-04 8009303 YP_002968773.1 CDS Balac_1362 NC_012814.1 1595412 1596452 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(1595412..1596452) Bifidobacterium animalis subsp. lactis Bl-04 8009304 YP_002968774.1 CDS Balac_1363 NC_012814.1 1596620 1599013 R COG1770 Protease II; protease II complement(1596620..1599013) Bifidobacterium animalis subsp. lactis Bl-04 8009305 YP_002968775.1 CDS Balac_1364 NC_012814.1 1599241 1600752 R COG4850 Uncharacterized conserved protein; hypothetical protein complement(1599241..1600752) Bifidobacterium animalis subsp. lactis Bl-04 8009306 YP_002968776.1 CDS Balac_1365 NC_012814.1 1600809 1601219 R COG0509 Glycine cleavage system H protein (lipoate-binding); glycine cleavage system H protein complement(1600809..1601219) Bifidobacterium animalis subsp. lactis Bl-04 8009307 YP_002968777.1 CDS Balac_1366 NC_012814.1 1601283 1602392 R COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding; hypothetical protein complement(1601283..1602392) Bifidobacterium animalis subsp. lactis Bl-04 8009308 YP_002968778.1 CDS Balac_1367 NC_012814.1 1602392 1603318 R COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); alpha beta hydrolase complement(1602392..1603318) Bifidobacterium animalis subsp. lactis Bl-04 8009309 YP_002968779.1 CDS Balac_1368 NC_012814.1 1603398 1604012 R hypothetical protein complement(1603398..1604012) Bifidobacterium animalis subsp. lactis Bl-04 8009310 YP_002968780.1 CDS Balac_1369 NC_012814.1 1604198 1604593 D COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 1604198..1604593 Bifidobacterium animalis subsp. lactis Bl-04 8009311 YP_002968781.1 CDS Balac_1370 NC_012814.1 1604894 1605952 D COG3583 Uncharacterized protein conserved in bacteria; hypothetical protein 1604894..1605952 Bifidobacterium animalis subsp. lactis Bl-04 8009312 YP_002968782.1 CDS Balac_1371 NC_012814.1 1606229 1607839 R COG2148 Sugar transferases involved inlipopolysaccharide synthesis; UDP-phosphate sugar phosphotransferase complement(1606229..1607839) Bifidobacterium animalis subsp. lactis Bl-04 8009313 YP_002968783.1 CDS Balac_1372 NC_012814.1 1608102 1608551 R hypothetical protein complement(1608102..1608551) Bifidobacterium animalis subsp. lactis Bl-04 8009314 YP_002968784.1 CDS Balac_1373 NC_012814.1 1608963 1610402 D COG4713 Predicted membrane protein; hypothetical protein 1608963..1610402 Bifidobacterium animalis subsp. lactis Bl-04 8009315 YP_002968785.1 CDS Balac_1374 NC_012814.1 1610386 1611327 R COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase complement(1610386..1611327) Bifidobacterium animalis subsp. lactis Bl-04 8009316 YP_002968786.1 CDS Balac_1375 NC_012814.1 1611471 1613138 R hypothetical protein complement(1611471..1613138) Bifidobacterium animalis subsp. lactis Bl-04 8009317 YP_002968787.1 CDS Balac_1376 NC_012814.1 1613504 1614394 R COG1209 dTDP-glucose pyrophosphorylase; dTDP-glucose pyrophosphorylase complement(1613504..1614394) Bifidobacterium animalis subsp. lactis Bl-04 8009318 YP_002968788.1 CDS Balac_1377 NC_012814.1 1614408 1615859 R COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes; dTDP-4-dehydrorhamnose 3,5-epimerase complement(1614408..1615859) Bifidobacterium animalis subsp. lactis Bl-04 8009319 YP_002968789.1 CDS Balac_1378 NC_012814.1 1615934 1616953 R COG1088 dTDP-D-glucose 4,6-dehydratase; dTDP-D-glucose 4,6-dehydratase complement(1615934..1616953) Bifidobacterium animalis subsp. lactis Bl-04 8009320 YP_002968790.1 CDS Balac_1379 NC_012814.1 1617109 1618074 D COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase-like protein 1617109..1618074 Bifidobacterium animalis subsp. lactis Bl-04 8009321 YP_002968791.1 CDS Balac_1380 NC_012814.1 1618076 1619527 R COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; flippase Wzx complement(1618076..1619527) Bifidobacterium animalis subsp. lactis Bl-04 8009322 YP_002968792.1 CDS Balac_1381 NC_012814.1 1619553 1620440 R COG1216 Predicted glycosyltransferases; glycosyl transferase family protein complement(1619553..1620440) Bifidobacterium animalis subsp. lactis Bl-04 8009323 YP_002968793.1 CDS Balac_1382 NC_012814.1 1620459 1621472 R COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase complement(1620459..1621472) Bifidobacterium animalis subsp. lactis Bl-04 8009324 YP_002968794.1 CDS Balac_1383 NC_012814.1 1621465 1622811 R hypothetical protein complement(1621465..1622811) Bifidobacterium animalis subsp. lactis Bl-04 8009325 YP_002968795.1 CDS Balac_1384 NC_012814.1 1622808 1623701 R COG1216 Predicted glycosyltransferases; glycosyltransferase complement(1622808..1623701) Bifidobacterium animalis subsp. lactis Bl-04 8009326 YP_002968796.1 CDS Balac_1385 NC_012814.1 1623714 1624478 R hypothetical protein complement(1623714..1624478) Bifidobacterium animalis subsp. lactis Bl-04 8009327 YP_002968797.1 CDS Balac_1386 NC_012814.1 1624483 1625370 R COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase family protein complement(1624483..1625370) Bifidobacterium animalis subsp. lactis Bl-04 8009328 YP_002968798.1 CDS Balac_1387 NC_012814.1 1625520 1626452 R polysaccharide biosynthesis protein complement(1625520..1626452) Bifidobacterium animalis subsp. lactis Bl-04 8009329 YP_002968799.1 CDS Balac_1388 NC_012814.1 1626517 1627764 R COG1004 Predicted UDP-glucose 6-dehydrogenase; uridine diphosphate glucose dehydrogenase complement(1626517..1627764) Bifidobacterium animalis subsp. lactis Bl-04 8009330 YP_002968800.1 CDS Balac_1389 NC_012814.1 1627885 1629219 R COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; flippase Wzx complement(1627885..1629219) Bifidobacterium animalis subsp. lactis Bl-04 8009331 YP_002968801.1 CDS Balac_1390 NC_012814.1 1629369 1630373 R hypothetical protein complement(1629369..1630373) Bifidobacterium animalis subsp. lactis Bl-04 8009332 YP_002968802.1 CDS Balac_1391 NC_012814.1 1630426 1631289 R COG1216 Predicted glycosyltransferases; group 2 family glycosyl transferase complement(1630426..1631289) Bifidobacterium animalis subsp. lactis Bl-04 8009333 YP_002968803.1 CDS Balac_1392 NC_012814.1 1631383 1632918 R COG2148 Sugar transferases involved inlipopolysaccharide synthesis; galactosyl transferase CpsD complement(1631383..1632918) Bifidobacterium animalis subsp. lactis Bl-04 8009334 YP_002968804.1 CDS Balac_1393 NC_012814.1 1633195 1633536 D hypothetical protein 1633195..1633536 Bifidobacterium animalis subsp. lactis Bl-04 8009335 YP_002968805.1 CDS Balac_1394 NC_012814.1 1633609 1635333 D COG0477 Permeases of the major facilitator superfamily; hypothetical protein 1633609..1635333 Bifidobacterium animalis subsp. lactis Bl-04 8009336 YP_002968806.1 CDS Balac_1395 NC_012814.1 1635471 1636787 R COG1914 Mn2+ and Fe2+ transporters of the NRAMP family; H(+)-stimulated manganese uptake system protein complement(1635471..1636787) Bifidobacterium animalis subsp. lactis Bl-04 8009337 YP_002968807.1 CDS Balac_1396 NC_012814.1 1636933 1637661 R hypothetical protein complement(1636933..1637661) Bifidobacterium animalis subsp. lactis Bl-04 8009338 YP_002968808.1 CDS Balac_1397 NC_012814.1 1637820 1638695 D with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 1637820..1638695 Bifidobacterium animalis subsp. lactis Bl-04 8009339 YP_002968809.1 CDS Balac_1398 NC_012814.1 1638722 1639372 D with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 1638722..1639372 Bifidobacterium animalis subsp. lactis Bl-04 8009340 YP_002968810.1 CDS Balac_1399 NC_012814.1 1639715 1640851 D COG0451 Nucleoside-diphosphate-sugar epimerases; nucleotide sugar epimerase 1639715..1640851 Bifidobacterium animalis subsp. lactis Bl-04 8009341 YP_002968811.1 CDS Balac_1400 NC_012814.1 1640956 1641420 D COG0707 UDP-N-acetylglucosamine: LPSN-acetylglucosamine transferase; polysaccharide biosynthesis protein CpsF 1640956..1641420 Bifidobacterium animalis subsp. lactis Bl-04 8009342 YP_002968812.1 CDS Balac_1401 NC_012814.1 1641420 1641920 D COG5017 Uncharacterized conserved protein; glycosyltransferase 28-like protein 1641420..1641920 Bifidobacterium animalis subsp. lactis Bl-04 8009343 YP_002968813.1 CDS Balac_1402 NC_012814.1 1641998 1642951 D COG1216 Predicted glycosyltransferases; putative glycosyltransferase 1641998..1642951 Bifidobacterium animalis subsp. lactis Bl-04 8009344 YP_002968814.1 CDS Balac_1403 NC_012814.1 1642944 1643780 D COG1216 Predicted glycosyltransferases; glycosyl transferase family protein 1642944..1643780 Bifidobacterium animalis subsp. lactis Bl-04 8009345 YP_002968815.1 CDS Balac_1404 NC_012814.1 1643966 1645099 D hypothetical protein 1643966..1645099 Bifidobacterium animalis subsp. lactis Bl-04 8009346 YP_002968816.1 CDS Balac_1405 NC_012814.1 1645224 1648805 R COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components; multidrug ABC transporter ATPase and permease complement(1645224..1648805) Bifidobacterium animalis subsp. lactis Bl-04 8009347 YP_002968817.1 CDS Balac_1406 NC_012814.1 1649047 1650867 D COG1022 Long-chain acyl-CoA synthetases (AMP-forming); long-chain-fatty acid CoA ligase 1649047..1650867 Bifidobacterium animalis subsp. lactis Bl-04 8009348 YP_002968818.1 CDS Balac_1407 NC_012814.1 1650942 1652330 R COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; hypothetical protein complement(1650942..1652330) Bifidobacterium animalis subsp. lactis Bl-04 8009349 YP_002968819.1 CDS Balac_1408 NC_012814.1 1652518 1653084 D COG0394 Protein-tyrosine-phosphatase; hypothetical protein 1652518..1653084 Bifidobacterium animalis subsp. lactis Bl-04 8009350 YP_002968820.1 CDS Balac_1409 NC_012814.1 1653169 1654938 R hypothetical protein complement(1653169..1654938) Bifidobacterium animalis subsp. lactis Bl-04 8009351 YP_002968821.1 CDS Balac_1410 NC_012814.1 1655064 1656536 R COG3944 Capsular polysaccharide biosynthesis protein; Etk-like tyrosine kinase complement(1655064..1656536) Bifidobacterium animalis subsp. lactis Bl-04 8009352 YP_002968822.1 CDS Balac_1411 NC_012814.1 1657425 1658279 D hypothetical protein 1657425..1658279 Bifidobacterium animalis subsp. lactis Bl-04 8009353 YP_002968823.1 CDS Balac_1412 NC_012814.1 1658410 1658745 D hypothetical protein 1658410..1658745 Bifidobacterium animalis subsp. lactis Bl-04 8009354 YP_002968824.1 CDS Balac_1413 NC_012814.1 1659345 1660478 D COG3464 Transposase and in activated derivatives; transposase, IS204/IS1001/IS1096/IS1165 family protein 1659345..1660478 Bifidobacterium animalis subsp. lactis Bl-04 8009355 YP_002968825.1 CDS Balac_1414 NC_012814.1 1661041 1662024 R COG0083 Homoserine kinase; homoserine kinase complement(1661041..1662024) Bifidobacterium animalis subsp. lactis Bl-04 8009356 YP_002968826.1 CDS Balac_1415 NC_012814.1 1662087 1663397 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(1662087..1663397) Bifidobacterium animalis subsp. lactis Bl-04 8009357 YP_002968827.1 CDS Balac_1416 NC_012814.1 1663670 1665259 R COG0019 Diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(1663670..1665259) Bifidobacterium animalis subsp. lactis Bl-04 8009358 YP_002968828.1 CDS argS NC_012814.1 1665454 1667226 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(1665454..1667226) Bifidobacterium animalis subsp. lactis Bl-04 8009359 YP_002968829.1 CDS Balac_1418 NC_012814.1 1667490 1668944 R COG5520 O-Glycosyl hydrolase; glucan endo-1,6-beta-glucosidase complement(1667490..1668944) Bifidobacterium animalis subsp. lactis Bl-04 8009360 YP_002968830.1 CDS Balac_1419 NC_012814.1 1669012 1669410 R COG0251 Putative translation initiation inhibitor, yjgF family; putative translation initiation inhibitor complement(1669012..1669410) Bifidobacterium animalis subsp. lactis Bl-04 8009361 YP_002968831.1 CDS Balac_1420 NC_012814.1 1669658 1670356 R COG0395 ABC-type sugar transport system, permease component; putative sugar transport integral membrane protein complement(1669658..1670356) Bifidobacterium animalis subsp. lactis Bl-04 8009362 YP_002968832.1 CDS Balac_1421 NC_012814.1 1670355 1671254 D COG3459 Cellobiose phosphorylase; hypothetical protein 1670355..1671254 Bifidobacterium animalis subsp. lactis Bl-04 8009363 YP_002968833.1 CDS Balac_1423 NC_012814.1 1671589 1672542 R COG3118 Thioredoxin domain-containing protein; hypothetical protein complement(1671589..1672542) Bifidobacterium animalis subsp. lactis Bl-04 8009607 YP_002968834.1 CDS Balac_1424 NC_012814.1 1672609 1673619 R hypothetical protein complement(1672609..1673619) Bifidobacterium animalis subsp. lactis Bl-04 8009365 YP_002968835.1 CDS Balac_1425 NC_012814.1 1673616 1674965 R hypothetical protein complement(1673616..1674965) Bifidobacterium animalis subsp. lactis Bl-04 8009366 YP_002968836.1 CDS Balac_1426 NC_012814.1 1675100 1676029 D COG0545 FKBP-type peptidyl-prolyl cis-transisomerases 1; secreted peptidyl-prolyl cis-trans isomeraseprotein 1675100..1676029 Bifidobacterium animalis subsp. lactis Bl-04 8009367 YP_002968837.1 CDS Balac_1427 NC_012814.1 1676120 1676824 R COG1637 Predicted nuclease of the RecB family; hypothetical protein complement(1676120..1676824) Bifidobacterium animalis subsp. lactis Bl-04 8009368 YP_002968838.1 CDS atpC NC_012814.1 1677250 1677558 R produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit epsilon complement(1677250..1677558) Bifidobacterium animalis subsp. lactis Bl-04 8009369 YP_002968839.1 CDS Balac_1429 NC_012814.1 1677558 1679045 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(1677558..1679045) Bifidobacterium animalis subsp. lactis Bl-04 8009370 YP_002968840.1 CDS Balac_1430 NC_012814.1 1679055 1679975 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma complement(1679055..1679975) Bifidobacterium animalis subsp. lactis Bl-04 8009371 YP_002968841.1 CDS Balac_1431 NC_012814.1 1679979 1681619 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(1679979..1681619) Bifidobacterium animalis subsp. lactis Bl-04 8009372 YP_002968842.1 CDS Balac_1432 NC_012814.1 1681683 1682495 R produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta complement(1681683..1682495) Bifidobacterium animalis subsp. lactis Bl-04 8009373 YP_002968843.1 CDS Balac_1433 NC_012814.1 1682574 1683101 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B complement(1682574..1683101) Bifidobacterium animalis subsp. lactis Bl-04 8009374 YP_002968844.1 CDS Balac_1434 NC_012814.1 1683155 1683385 R COG0636 F0F1-type ATP synthase, subunitc/Archaeal/vacuolar-type H+-ATPase, subunit K; ATP synthase C chain complement(1683155..1683385) Bifidobacterium animalis subsp. lactis Bl-04 8009375 YP_002968845.1 CDS Balac_1435 NC_012814.1 1683437 1684249 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A complement(1683437..1684249) Bifidobacterium animalis subsp. lactis Bl-04 8009376 YP_002968846.1 CDS Balac_1436 NC_012814.1 1684541 1685569 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(1684541..1685569) Bifidobacterium animalis subsp. lactis Bl-04 8009377 YP_002968847.1 CDS Balac_1437 NC_012814.1 1685690 1687120 R COG0477 Permeases of the major facilitator superfamily; hypothetical protein complement(1685690..1687120) Bifidobacterium animalis subsp. lactis Bl-04 8009378 YP_002968848.1 CDS Balac_1438 NC_012814.1 1687234 1688175 R COG1957 Inosine-uridine nucleoside N-ribohydrolase; hypothetical protein complement(1687234..1688175) Bifidobacterium animalis subsp. lactis Bl-04 8009379 YP_002968849.1 CDS Balac_1440 NC_012814.1 1688611 1689729 R hypothetical protein complement(1688611..1689729) Bifidobacterium animalis subsp. lactis Bl-04 8009608 YP_002968850.1 CDS Balac_1441 NC_012814.1 1689889 1690074 D hypothetical protein 1689889..1690074 Bifidobacterium animalis subsp. lactis Bl-04 8009381 YP_002968851.1 CDS Balac_1442 NC_012814.1 1690181 1690576 D hypothetical protein 1690181..1690576 Bifidobacterium animalis subsp. lactis Bl-04 8009382 YP_002968852.1 CDS Balac_1443 NC_012814.1 1690573 1691334 D COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; cell division FtsK/SpoIIIE 1690573..1691334 Bifidobacterium animalis subsp. lactis Bl-04 8009383 YP_002968853.1 CDS Balac_1444 NC_012814.1 1691331 1692248 D COG1536 Flagellar motor switch protein; hypothetical protein 1691331..1692248 Bifidobacterium animalis subsp. lactis Bl-04 8009384 YP_002968854.1 CDS Balac_1445 NC_012814.1 1692232 1692459 D hypothetical protein 1692232..1692459 Bifidobacterium animalis subsp. lactis Bl-04 8009385 YP_002968855.1 CDS Balac_1446 NC_012814.1 1692479 1693597 R COG1479 Uncharacterized conserved protein; hypothetical protein complement(1692479..1693597) Bifidobacterium animalis subsp. lactis Bl-04 8009386 YP_002968856.1 CDS Balac_1447 NC_012814.1 1693597 1694688 R modification methylase complement(1693597..1694688) Bifidobacterium animalis subsp. lactis Bl-04 8009387 YP_002968857.1 CDS Balac_1448 NC_012814.1 1694766 1695986 R COG0582 Integrase; hypothetical protein complement(1694766..1695986) Bifidobacterium animalis subsp. lactis Bl-04 8009388 YP_002968858.1 CDS frc NC_012814.1 1696590 1697921 D catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; formyl-coenzyme A transferase 1696590..1697921 Bifidobacterium animalis subsp. lactis Bl-04 8009389 YP_002968859.1 CDS Balac_1450 NC_012814.1 1698126 1699262 R COG2730 Endoglucanase; secreted beta-mannosidase complement(1698126..1699262) Bifidobacterium animalis subsp. lactis Bl-04 8009390 YP_002968860.1 CDS Balac_1451 NC_012814.1 1699987 1700118 D hypothetical protein 1699987..1700118 Bifidobacterium animalis subsp. lactis Bl-04 8009391 YP_002968861.1 CDS Balac_1452 NC_012814.1 1700126 1701229 R COG0679 Predicted permeases; permease complement(1700126..1701229) Bifidobacterium animalis subsp. lactis Bl-04 8009392 YP_002968862.1 CDS oxc NC_012814.1 1701334 1702911 R COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome, glyoxylate carboligase, phosphonopyruvatedecarboxylase)]; putative oxalyl-CoA decarboxylase complement(1701334..1702911) Bifidobacterium animalis subsp. lactis Bl-04 8009393 YP_002968863.1 CDS Balac_1454 NC_012814.1 1702908 1703114 R COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome, glyoxylate carboligase, phosphonopyruvatedecarboxylase)]; putative oxalyl-CoA decarboxylase complement(1702908..1703114) Bifidobacterium animalis subsp. lactis Bl-04 8009394 YP_002968864.1 CDS Balac_1455 NC_012814.1 1703308 1704966 R COG0038 Chloride channel protein EriC; voltage gated chloride channel family protein complement(1703308..1704966) Bifidobacterium animalis subsp. lactis Bl-04 8009395 YP_002968865.1 CDS capA NC_012814.1 1705164 1710422 R COG4932 Predicted outer membrane protein; collagen adhesion protein complement(1705164..1710422) Bifidobacterium animalis subsp. lactis Bl-04 8009396 YP_002968866.1 CDS Balac_1457 NC_012814.1 1710514 1712589 R hypothetical protein complement(1710514..1712589) Bifidobacterium animalis subsp. lactis Bl-04 8009397 YP_002968867.1 CDS Balac_1458 NC_012814.1 1712938 1715133 D COG0366 Glycosidases; Trehalose-6-phosphate hydrolase 1712938..1715133 Bifidobacterium animalis subsp. lactis Bl-04 8009398 YP_002968868.1 CDS Balac_1459 NC_012814.1 1715253 1715762 D COG0221 Inorganic pyrophosphatase; inorganic pyrophosphatase 1715253..1715762 Bifidobacterium animalis subsp. lactis Bl-04 8009399 YP_002968869.1 CDS Balac_1460 NC_012814.1 1715807 1716655 R hypothetical protein complement(1715807..1716655) Bifidobacterium animalis subsp. lactis Bl-04 8009400 YP_002968870.1 CDS Balac_1461 NC_012814.1 1716966 1717715 D COG0745 Response regulators consisting of aCheY-like receiver domain and a winged-helix DNA-binding domain; hypothetical protein 1716966..1717715 Bifidobacterium animalis subsp. lactis Bl-04 8009401 YP_002968871.1 CDS Balac_1462 NC_012814.1 1717795 1718538 D COG0177 Predicted EndoIII-related endonuclease; putative EndoIII-related endonuclease 1717795..1718538 Bifidobacterium animalis subsp. lactis Bl-04 8009402 YP_002968872.1 CDS Balac_1463 NC_012814.1 1718941 1719036 D hypothetical protein 1718941..1719036 Bifidobacterium animalis subsp. lactis Bl-04 8009403 YP_002968873.1 CDS Balac_1464 NC_012814.1 1719118 1720653 D COG0747 ABC-type dipeptide transport system, periplasmic component; ABC transporter substrate-binding protein 1719118..1720653 Bifidobacterium animalis subsp. lactis Bl-04 8009404 YP_002968874.1 CDS valS NC_012814.1 1720717 1723509 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1720717..1723509 Bifidobacterium animalis subsp. lactis Bl-04 8009405 YP_002968875.1 CDS Balac_1466 NC_012814.1 1723727 1724206 D COG1522 Transcriptional regulators; AsnC family transcriptional regulator 1723727..1724206 Bifidobacterium animalis subsp. lactis Bl-04 8009406 YP_002968876.1 CDS Balac_1467 NC_012814.1 1724277 1724666 D catalyzes the interconversion of chorismate to prephenate; chorismate mutase 1724277..1724666 Bifidobacterium animalis subsp. lactis Bl-04 8009407 YP_002968877.1 CDS Balac_1468 NC_012814.1 1724741 1726705 D hypothetical protein 1724741..1726705 Bifidobacterium animalis subsp. lactis Bl-04 8009408 YP_002968878.1 CDS Balac_1469 NC_012814.1 1726794 1728797 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(1726794..1728797) Bifidobacterium animalis subsp. lactis Bl-04 8009409 YP_002968879.1 CDS Balac_1470 NC_012814.1 1729020 1730636 R COG1232 Protoporphyrinogen oxidase; hypothetical protein complement(1729020..1730636) Bifidobacterium animalis subsp. lactis Bl-04 8009410 YP_002968880.1 CDS Balac_1471 NC_012814.1 1730815 1731129 R hypothetical protein complement(1730815..1731129) Bifidobacterium animalis subsp. lactis Bl-04 8009411 YP_002968881.1 CDS Balac_1472 NC_012814.1 1731138 1732181 R COG1670 Acetyltransferases, including N-acetylasesof ribosomal proteins; acetyltransferase complement(1731138..1732181) Bifidobacterium animalis subsp. lactis Bl-04 8009412 YP_002968882.1 CDS gatB NC_012814.1 1732606 1734105 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1732606..1734105) Bifidobacterium animalis subsp. lactis Bl-04 8009413 YP_002968883.1 CDS gatA NC_012814.1 1734126 1735670 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1734126..1735670) Bifidobacterium animalis subsp. lactis Bl-04 8009414 YP_002968884.1 CDS gatC NC_012814.1 1735672 1735935 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(1735672..1735935) Bifidobacterium animalis subsp. lactis Bl-04 8009415 YP_002968885.1 CDS Balac_1476 NC_012814.1 1736090 1736887 R hypothetical protein complement(1736090..1736887) Bifidobacterium animalis subsp. lactis Bl-04 8009416 YP_002968886.1 CDS Balac_1477 NC_012814.1 1737034 1737819 R COG1131 ABC-type multidrug transport system, ATPase component; putative ABC transporter ATP-binding protein complement(1737034..1737819) Bifidobacterium animalis subsp. lactis Bl-04 8009417 YP_002968887.1 CDS Balac_1478 NC_012814.1 1738054 1738863 R COG0566 rRNA methylases; hypothetical protein complement(1738054..1738863) Bifidobacterium animalis subsp. lactis Bl-04 8009418 YP_002968888.1 CDS Balac_1479 NC_012814.1 1738909 1739571 R COG0461 Orotate phosphoribosyltransferase; hypothetical protein complement(1738909..1739571) Bifidobacterium animalis subsp. lactis Bl-04 8009419 YP_002968889.1 CDS Balac_1480 NC_012814.1 1739704 1741110 D COG2217 Cation transport ATPase; copper-transporting ATPase 1739704..1741110 Bifidobacterium animalis subsp. lactis Bl-04 8009420 YP_002968890.1 CDS clpB NC_012814.1 1741204 1743891 R COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-binding subunit of Clp protease complement(1741204..1743891) Bifidobacterium animalis subsp. lactis Bl-04 8009421 YP_002968891.1 CDS Balac_1482 NC_012814.1 1744138 1744959 R COG0179 2-keto-4-pentenoatehydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase complement(1744138..1744959) Bifidobacterium animalis subsp. lactis Bl-04 8009422 YP_002968892.1 CDS Balac_1483 NC_012814.1 1744970 1745488 R hypothetical protein complement(1744970..1745488) Bifidobacterium animalis subsp. lactis Bl-04 8009423 YP_002968893.1 CDS capB NC_012814.1 1745680 1747362 R cell surface protein fimA fimbrial subunit complement(1745680..1747362) Bifidobacterium animalis subsp. lactis Bl-04 8009424 YP_002968894.1 CDS srtA NC_012814.1 1747557 1749572 R hypothetical protein complement(1747557..1749572) Bifidobacterium animalis subsp. lactis Bl-04 8009425 YP_002968895.1 CDS Balac_1486 NC_012814.1 1750474 1751502 R COG3764 Sortase (surface protein transpeptidase); Sortase complement(1750474..1751502) Bifidobacterium animalis subsp. lactis Bl-04 8009426 YP_002968896.1 CDS Balac_1487 NC_012814.1 1751545 1752390 R COG0325 Predicted enzyme with a TIM-barrel fold; hypothetical protein complement(1751545..1752390) Bifidobacterium animalis subsp. lactis Bl-04 8009427 YP_002968897.1 CDS Balac_1488 NC_012814.1 1752505 1753521 R COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-Q tRNA complement(1752505..1753521) Bifidobacterium animalis subsp. lactis Bl-04 8009428 YP_002968898.1 CDS Balac_1489 NC_012814.1 1753521 1754432 R membrane protein complement(1753521..1754432) Bifidobacterium animalis subsp. lactis Bl-04 8009429 YP_002968899.1 CDS Balac_1490 NC_012814.1 1754588 1755322 R COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); glycerol uptake facilitator protein complement(1754588..1755322) Bifidobacterium animalis subsp. lactis Bl-04 8009430 YP_002968900.1 CDS Balac_1491 NC_012814.1 1755478 1755837 R hypothetical protein complement(1755478..1755837) Bifidobacterium animalis subsp. lactis Bl-04 8009431 YP_002968901.1 CDS Balac_1492 NC_012814.1 1756081 1756188 R hypothetical protein complement(1756081..1756188) Bifidobacterium animalis subsp. lactis Bl-04 8009432 YP_002968902.1 CDS Balac_1494 NC_012814.1 1756631 1757194 R hypothetical protein complement(1756631..1757194) Bifidobacterium animalis subsp. lactis Bl-04 8009609 YP_002968903.1 CDS Balac_1495 NC_012814.1 1757238 1757447 D hypothetical protein 1757238..1757447 Bifidobacterium animalis subsp. lactis Bl-04 8009434 YP_002968904.1 CDS rplI NC_012814.1 1757753 1758199 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(1757753..1758199) Bifidobacterium animalis subsp. lactis Bl-04 8009435 YP_002968905.1 CDS rpsR NC_012814.1 1758220 1758468 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(1758220..1758468) Bifidobacterium animalis subsp. lactis Bl-04 8009436 YP_002968906.1 CDS Balac_1498 NC_012814.1 1758516 1759148 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(1758516..1759148) Bifidobacterium animalis subsp. lactis Bl-04 8009437 YP_002968907.1 CDS rpsF NC_012814.1 1759186 1759473 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(1759186..1759473) Bifidobacterium animalis subsp. lactis Bl-04 8009438 YP_002968908.1 CDS Balac_1500 NC_012814.1 1759710 1760681 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1759710..1760681 Bifidobacterium animalis subsp. lactis Bl-04 8009439 YP_002968909.1 CDS Balac_1501 NC_012814.1 1761002 1761970 R COG0524 Sugar kinases, ribokinase family; PfkB family sugar kinase complement(1761002..1761970) Bifidobacterium animalis subsp. lactis Bl-04 8009440 YP_002968910.1 CDS Balac_1502 NC_012814.1 1762073 1763551 R COG0477 Permeases of the major facilitator superfamily; tetracycline repressor protein complement(1762073..1763551) Bifidobacterium animalis subsp. lactis Bl-04 8009441 YP_002968911.1 CDS Balac_1503 NC_012814.1 1763634 1764587 R COG1957 Inosine-uridine nucleoside N-ribohydrolase; putative nucleoside hydrolase protein complement(1763634..1764587) Bifidobacterium animalis subsp. lactis Bl-04 8009442 YP_002968912.1 CDS Balac_1504 NC_012814.1 1764770 1765747 R COG1609 Transcriptional regulators; ribose operon repressor RbsR complement(1764770..1765747) Bifidobacterium animalis subsp. lactis Bl-04 8009443 YP_002968913.1 CDS Balac_1508 NC_012814.1 1772075 1773259 R COG0562 UDP-galactopyranose mutase; UDP-galactopyranose mutase complement(1772075..1773259) Bifidobacterium animalis subsp. lactis Bl-04 8009612 YP_002968914.1 CDS Balac_1509 NC_012814.1 1773480 1774565 D COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase family protein 1773480..1774565 Bifidobacterium animalis subsp. lactis Bl-04 8009445 YP_002968915.1 CDS Balac_1510 NC_012814.1 1774705 1774803 D hypothetical protein 1774705..1774803 Bifidobacterium animalis subsp. lactis Bl-04 8009446 YP_002968916.1 CDS Balac_1511 NC_012814.1 1774810 1775778 R COG1216 Predicted glycosyltransferases; putative glycosyl transferase complement(1774810..1775778) Bifidobacterium animalis subsp. lactis Bl-04 8009447 YP_002968917.1 CDS Balac_1512 NC_012814.1 1775984 1778125 D COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; Phosphoglycerol transferase 1775984..1778125 Bifidobacterium animalis subsp. lactis Bl-04 8009448 YP_002968918.1 CDS Balac_1513 NC_012814.1 1778190 1778297 D hypothetical protein 1778190..1778297 Bifidobacterium animalis subsp. lactis Bl-04 8009449 YP_002968919.1 CDS Balac_1514 NC_012814.1 1778311 1780635 D COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; Phosphoglycerol transferase 1778311..1780635 Bifidobacterium animalis subsp. lactis Bl-04 8009450 YP_002968920.1 CDS Balac_1515 NC_012814.1 1780647 1782701 D COG1216 Predicted glycosyltransferases; hypothetical protein 1780647..1782701 Bifidobacterium animalis subsp. lactis Bl-04 8009451 YP_002968921.1 CDS Balac_1516 NC_012814.1 1782789 1783568 R COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); 1,4-beta-N-acetylmuramidase complement(1782789..1783568) Bifidobacterium animalis subsp. lactis Bl-04 8009452 YP_002968922.1 CDS Balac_1517 NC_012814.1 1783751 1785358 R COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase); 1,4-beta-N-acetylmuramidase complement(1783751..1785358) Bifidobacterium animalis subsp. lactis Bl-04 8009453 YP_002968923.1 CDS Balac_1518 NC_012814.1 1785872 1786789 D COG3328 Transposase and inactivated derivatives; transposase 1785872..1786789 Bifidobacterium animalis subsp. lactis Bl-04 8009454 YP_002968924.1 CDS Balac_1519 NC_012814.1 1786919 1787476 D COG4886 Leucine-rich repeat (LRR protein); N-acetylmuramoyl-L-alanine amidase 1786919..1787476 Bifidobacterium animalis subsp. lactis Bl-04 8009455 YP_002968925.1 CDS Balac_1520 NC_012814.1 1787537 1788064 D Allergen V5/Tpx-1 family protein 1787537..1788064 Bifidobacterium animalis subsp. lactis Bl-04 8009456 YP_002968926.1 CDS Balac_1521 NC_012814.1 1788216 1788917 R hypothetical protein complement(1788216..1788917) Bifidobacterium animalis subsp. lactis Bl-04 8009457 YP_002968927.1 CDS Balac_1522 NC_012814.1 1788937 1790265 R hypothetical protein complement(1788937..1790265) Bifidobacterium animalis subsp. lactis Bl-04 8009458 YP_002968928.1 CDS Balac_1523 NC_012814.1 1790289 1791704 R COG1134 ABC-type polysaccharide/polyol phosphatetransport system, ATPase component; ATP-driven polysaccharide export protein complement(1790289..1791704) Bifidobacterium animalis subsp. lactis Bl-04 8009459 YP_002968929.1 CDS Balac_1524 NC_012814.1 1791704 1792495 R COG1682 ABC-type polysaccharide/polyol phosphateexport systems, permease component; polysaccharide ABC transporter permease complement(1791704..1792495) Bifidobacterium animalis subsp. lactis Bl-04 8009460 YP_002968930.1 CDS Balac_1525 NC_012814.1 1792721 1794667 D COG1216 Predicted glycosyltransferases; hypothetical protein 1792721..1794667 Bifidobacterium animalis subsp. lactis Bl-04 8009461 YP_002968931.1 CDS Balac_1527 NC_012814.1 1794958 1797141 R hypothetical protein complement(1794958..1797141) Bifidobacterium animalis subsp. lactis Bl-04 8009613 YP_002968932.1 CDS Balac_1528 NC_012814.1 1797204 1799453 R putative PMT family glycosyltransferase complement(1797204..1799453) Bifidobacterium animalis subsp. lactis Bl-04 8009463 YP_002968933.1 CDS Balac_1529 NC_012814.1 1799596 1799694 D hypothetical protein 1799596..1799694 Bifidobacterium animalis subsp. lactis Bl-04 8009464 YP_002968934.1 CDS Balac_1530 NC_012814.1 1799744 1801375 R putative riboflavin-specific deaminase complement(1799744..1801375) Bifidobacterium animalis subsp. lactis Bl-04 8009465 YP_002968935.1 CDS Balac_1531 NC_012814.1 1801719 1803059 D COG0577 ABC-type antimicrobial peptide transport system, permease component; ABC transporter permease 1801719..1803059 Bifidobacterium animalis subsp. lactis Bl-04 8009466 YP_002968936.1 CDS Balac_1532 NC_012814.1 1803061 1804125 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter ATP-binding protein 1803061..1804125 Bifidobacterium animalis subsp. lactis Bl-04 8009467 YP_002968937.1 CDS Balac_1533 NC_012814.1 1804318 1805106 R COG1418 Predicted HD superfamily hydrolase; hypothetical protein complement(1804318..1805106) Bifidobacterium animalis subsp. lactis Bl-04 8009468 YP_002968938.1 CDS Balac_1534 NC_012814.1 1805345 1806247 R COG0121 Predicted glutamine amidotransferase; hypothetical protein complement(1805345..1806247) Bifidobacterium animalis subsp. lactis Bl-04 8009469 YP_002968939.1 CDS Balac_1535 NC_012814.1 1806528 1808720 R COG3158 K+ transporter; potassium transport system protein kup 2 complement(1806528..1808720) Bifidobacterium animalis subsp. lactis Bl-04 8009470 YP_002968940.1 CDS Balac_1536 NC_012814.1 1808926 1809882 R COG0084 Mg-dependent DNase; hypothetical protein complement(1808926..1809882) Bifidobacterium animalis subsp. lactis Bl-04 8009471 YP_002968941.1 CDS Balac_1537 NC_012814.1 1810053 1812449 R COG3345 Alpha-galactosidase; alpha-galactosidase complement(1810053..1812449) Bifidobacterium animalis subsp. lactis Bl-04 8009472 YP_002968942.1 CDS Balac_1538 NC_012814.1 1812527 1813240 R hypothetical protein complement(1812527..1813240) Bifidobacterium animalis subsp. lactis Bl-04 8007992 YP_002968943.1 CDS Balac_1539 NC_012814.1 1813438 1815231 R COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter ATPase and permease complement(1813438..1815231) Bifidobacterium animalis subsp. lactis Bl-04 8009473 YP_002968944.1 CDS Balac_1540 NC_012814.1 1815340 1817136 R COG1132 ABC-type multidrug transport system, ATPase and permease components; ABC transporter permease complement(1815340..1817136) Bifidobacterium animalis subsp. lactis Bl-04 8009474 YP_002968945.1 CDS Balac_1541 NC_012814.1 1817151 1817255 R hypothetical protein complement(1817151..1817255) Bifidobacterium animalis subsp. lactis Bl-04 8009475 YP_002968946.1 CDS Balac_1542 NC_012814.1 1818106 1819965 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1818106..1819965) Bifidobacterium animalis subsp. lactis Bl-04 8009476 YP_002968947.1 CDS Balac_1543 NC_012814.1 1820235 1820918 D hypothetical protein 1820235..1820918 Bifidobacterium animalis subsp. lactis Bl-04 8009477 YP_002968948.1 CDS Balac_1544 NC_012814.1 1820953 1821399 D hypothetical protein 1820953..1821399 Bifidobacterium animalis subsp. lactis Bl-04 8009478 YP_002968949.1 CDS Balac_1545 NC_012814.1 1821434 1822381 R COG0313 Predicted methyltransferases; hypothetical protein complement(1821434..1822381) Bifidobacterium animalis subsp. lactis Bl-04 8009479 YP_002968950.1 CDS Balac_1546 NC_012814.1 1822539 1824152 D COG1928 Dolichyl-phosphate-mannose--proteinO-mannosyl transferase; glycosyl transferase family protein 1822539..1824152 Bifidobacterium animalis subsp. lactis Bl-04 8009480 YP_002968951.1 CDS Balac_1547 NC_012814.1 1824703 1825524 D COG0657 Esterase/lipase; xylan esterase 1824703..1825524 Bifidobacterium animalis subsp. lactis Bl-04 8009481 YP_002968952.1 CDS Balac_1548 NC_012814.1 1825845 1826594 D COG0586 Uncharacterized membrane-associated protein; hypothetical protein 1825845..1826594 Bifidobacterium animalis subsp. lactis Bl-04 8009482 YP_002968953.1 CDS Balac_1550 NC_012814.1 1826910 1827653 R COG4832 Uncharacterized conserved protein; hypothetical protein complement(1826910..1827653) Bifidobacterium animalis subsp. lactis Bl-04 8009614 YP_002968954.1 CDS Balac_1551 NC_012814.1 1827654 1829984 R COG1472 Beta-glucosidase-related glycosidases; beta-D-glucosideglucohydrolase complement(1827654..1829984) Bifidobacterium animalis subsp. lactis Bl-04 8009484 YP_002968955.1 CDS Balac_1552 NC_012814.1 1830107 1830745 R COG1309 Transcriptional regulator; TetR family transcriptional regulator complement(1830107..1830745) Bifidobacterium animalis subsp. lactis Bl-04 8009485 YP_002968956.1 CDS Balac_1553 NC_012814.1 1831001 1831687 R COG0637 Predicted phosphatase/phosphohexomutase; hypothetical protein complement(1831001..1831687) Bifidobacterium animalis subsp. lactis Bl-04 8009486 YP_002968957.1 CDS Balac_1554 NC_012814.1 1831792 1832307 R COG0789 Predicted transcriptional regulators; MerR-type-transcriptional regulator HsrP complement(1831792..1832307) Bifidobacterium animalis subsp. lactis Bl-04 8009487 YP_002968958.1 CDS dnaJ NC_012814.1 1832352 1833407 R COG2214 DnaJ-class molecular chaperone; molecular chaperone DnaJ complement(1832352..1833407) Bifidobacterium animalis subsp. lactis Bl-04 8009488 YP_002968959.1 CDS grpE NC_012814.1 1833538 1834227 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1833538..1834227) Bifidobacterium animalis subsp. lactis Bl-04 8009489 YP_002968960.1 CDS dnaK NC_012814.1 1834227 1836092 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1834227..1836092) Bifidobacterium animalis subsp. lactis Bl-04 8009490 YP_002968961.1 CDS Balac_1558 NC_012814.1 1836229 1836384 R hypothetical protein complement(1836229..1836384) Bifidobacterium animalis subsp. lactis Bl-04 8009491 YP_002968962.1 CDS Balac_1559 NC_012814.1 1836845 1837870 R COG1609 Transcriptional regulators; LacI-type transcriptional regulator complement(1836845..1837870) Bifidobacterium animalis subsp. lactis Bl-04 8009492 YP_002968963.1 CDS Balac_1560 NC_012814.1 1837910 1838683 R putative ABC transporter membrane protein complement(1837910..1838683) Bifidobacterium animalis subsp. lactis Bl-04 8009493 YP_002968964.1 CDS Balac_1561 NC_012814.1 1838699 1839502 R COG1011 Predicted hydrolase (HAD superfamily); halo acid dehalogenase-like hydrolase complement(1838699..1839502) Bifidobacterium animalis subsp. lactis Bl-04 8009494 YP_002968965.1 CDS Balac_1562 NC_012814.1 1839492 1841591 R COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases; pullulanase complement(1839492..1841591) Bifidobacterium animalis subsp. lactis Bl-04 8009495 YP_002968966.1 CDS Balac_1563 NC_012814.1 1841596 1842564 R COG0395 ABC-type sugar transport system, permease component; putative sugar ABC transporter membrane protein complement(1841596..1842564) Bifidobacterium animalis subsp. lactis Bl-04 8009496 YP_002968967.1 CDS Balac_1564 NC_012814.1 1842561 1843934 R COG1175 ABC-type sugar transport systems, permease components; putative sugar ABC transporter membrane protein complement(1842561..1843934) Bifidobacterium animalis subsp. lactis Bl-04 8009497 YP_002968968.1 CDS Balac_1565 NC_012814.1 1844254 1845513 R COG2182 Maltose-binding periplasmic proteins/domains; putative sugar-binding secreted protein complement(1844254..1845513) Bifidobacterium animalis subsp. lactis Bl-04 8009498 YP_002968969.1 CDS Balac_1566 NC_012814.1 1845783 1847387 D COG0366 Glycosidases; glycosylase 1845783..1847387 Bifidobacterium animalis subsp. lactis Bl-04 8009499 YP_002968970.1 CDS Balac_1567 NC_012814.1 1847833 1850031 D COG1640 4-alpha-glucanotransferase; 4-alpha-glucanotransferase 1847833..1850031 Bifidobacterium animalis subsp. lactis Bl-04 8009500 YP_002968971.1 CDS Balac_1568 NC_012814.1 1850503 1851105 R hypothetical protein complement(1850503..1851105) Bifidobacterium animalis subsp. lactis Bl-04 8009501 YP_002968972.1 CDS Balac_1569 NC_012814.1 1851424 1852260 R COG0395 ABC-type sugar transport system, permease component; MalG-type ABC sugar transport system permease complement(1851424..1852260) Bifidobacterium animalis subsp. lactis Bl-04 8009502 YP_002968973.1 CDS Balac_1570 NC_012814.1 1852260 1853114 R COG1175 ABC-type sugar transport systems, permease components; ABC transporter permease complement(1852260..1853114) Bifidobacterium animalis subsp. lactis Bl-04 8009503 YP_002968974.1 CDS Balac_1571 NC_012814.1 1853577 1854587 D COG1609 Transcriptional regulators; LacI-type response repressor 1853577..1854587 Bifidobacterium animalis subsp. lactis Bl-04 8009504 YP_002968975.1 CDS Balac_1572 NC_012814.1 1854939 1856273 R COG1653 ABC-type sugar transport system, periplasmic component; ABC transporter substrate-binding protein complement(1854939..1856273) Bifidobacterium animalis subsp. lactis Bl-04 8009505 YP_002968976.1 CDS Balac_1573 NC_012814.1 1856632 1858407 D COG0366 Glycosidases; alpha-1,4-glucosidase 1856632..1858407 Bifidobacterium animalis subsp. lactis Bl-04 8009506 YP_002968977.1 CDS Balac_1574 NC_012814.1 1858737 1859405 R COG0406 Fructose-2,6-bisphosphatase; Broad specificity phosphatase complement(1858737..1859405) Bifidobacterium animalis subsp. lactis Bl-04 8009507 YP_002968978.1 CDS Balac_1575 NC_012814.1 1859568 1859984 D hypothetical protein 1859568..1859984 Bifidobacterium animalis subsp. lactis Bl-04 8009508 YP_002968979.1 CDS Balac_1576 NC_012814.1 1860084 1860860 D COG0778 Nitroreductase; NADPH-flavin oxidoreductase 1860084..1860860 Bifidobacterium animalis subsp. lactis Bl-04 8009509 YP_002968980.1 CDS Balac_1577 NC_012814.1 1861186 1861437 R hypothetical protein complement(1861186..1861437) Bifidobacterium animalis subsp. lactis Bl-04 8009510 YP_002968981.1 CDS Balac_1578 NC_012814.1 1861483 1862073 R COG0477 Permeases of the major facilitator superfamily; hypothetical protein complement(1861483..1862073) Bifidobacterium animalis subsp. lactis Bl-04 8009511 YP_002968982.1 CDS Balac_1582 NC_012814.1 1868346 1868882 D COG0388 Predicted amidohydrolase; NAD synthetase 1868346..1868882 Bifidobacterium animalis subsp. lactis Bl-04 8009617 YP_002968983.1 CDS Balac_1583 NC_012814.1 1868917 1870251 D COG0388 Predicted amidohydrolase; NAD+ synthetase 1868917..1870251 Bifidobacterium animalis subsp. lactis Bl-04 8009513 YP_002968984.1 CDS Balac_1584 NC_012814.1 1870415 1870684 R COG3077 DNA-damage-inducible protein J; hypothetical protein complement(1870415..1870684) Bifidobacterium animalis subsp. lactis Bl-04 8009514 YP_002968985.1 CDS Balac_1588 NC_012814.1 1877042 1878487 R COG2211 Na+/melibiose symporter and related transporters; Na+/xyloside symporter related transporter complement(1877042..1878487) Bifidobacterium animalis subsp. lactis Bl-04 8009620 YP_002968986.1 CDS Balac_1589 NC_012814.1 1878676 1880691 R COG3533 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1878676..1880691) Bifidobacterium animalis subsp. lactis Bl-04 8009516 YP_002968987.1 CDS Balac_1590 NC_012814.1 1880826 1881875 D COG1609 Transcriptional regulators; LacI-type transcriptional regulator 1880826..1881875 Bifidobacterium animalis subsp. lactis Bl-04 8009517 YP_002968988.1 CDS Balac_1591 NC_012814.1 1881946 1882701 D COG0846 NAD-dependent protein deacetylases, SIR2family; NAD-dependent protein deacetylase 1881946..1882701 Bifidobacterium animalis subsp. lactis Bl-04 8009518 YP_002968989.1 CDS Balac_1592 NC_012814.1 1882859 1884097 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(1882859..1884097) Bifidobacterium animalis subsp. lactis Bl-04 8009519 YP_002968990.1 CDS Balac_1593 NC_012814.1 1884284 1886119 R COG0366 Glycosidases; oligo-1,6-glucosidase complement(1884284..1886119) Bifidobacterium animalis subsp. lactis Bl-04 8009520 YP_002968991.1 CDS Balac_1594 NC_012814.1 1886198 1886326 R hypothetical protein complement(1886198..1886326) Bifidobacterium animalis subsp. lactis Bl-04 8009521 YP_002968992.1 CDS Balac_1595 NC_012814.1 1886920 1887876 D hypothetical protein 1886920..1887876 Bifidobacterium animalis subsp. lactis Bl-04 8009522 YP_002968993.1 CDS Balac_1596 NC_012814.1 1888317 1889927 R COG3345 Alpha-galactosidase; alpha-galactosidase complement(1888317..1889927) Bifidobacterium animalis subsp. lactis Bl-04 8009523 YP_002968994.1 CDS Balac_1597 NC_012814.1 1891162 1892067 R COG0395 ABC-type sugar transport system, permease component; MalG-type ABC sugar transport system permease complement(1891162..1892067) Bifidobacterium animalis subsp. lactis Bl-04 8009524 YP_002968995.1 CDS Balac_1598 NC_012814.1 1892072 1893064 R COG1175 ABC-type sugar transport systems, permease components; MalF-type ABC sugar transport systems permease complement(1892072..1893064) Bifidobacterium animalis subsp. lactis Bl-04 8009525 YP_002968996.1 CDS Balac_1599 NC_012814.1 1893098 1894411 R COG1653 ABC-type sugar transport system, periplasmic component; sugar binding protein of ABC transporter system complement(1893098..1894411) Bifidobacterium animalis subsp. lactis Bl-04 8009526 YP_002968997.1 CDS Balac_1600 NC_012814.1 1894542 1895750 D COG1940 Transcriptional regulator/sugar kinase; NagC-type transcriptional regulator 1894542..1895750 Bifidobacterium animalis subsp. lactis Bl-04 8009527 YP_002968998.1 CDS Balac_1601 NC_012814.1 1895775 1897997 R COG3345 Alpha-galactosidase; alpha-galactosidase complement(1895775..1897997) Bifidobacterium animalis subsp. lactis Bl-04 8009528 YP_002968999.1 CDS Balac_1602 NC_012814.1 1898113 1898622 R COG0590 Cytosine/adenosine deaminases; Cytosine/adenosine deaminase complement(1898113..1898622) Bifidobacterium animalis subsp. lactis Bl-04 8009529 YP_002969000.1 CDS Balac_1603 NC_012814.1 1898772 1900844 D COG0025 NhaP-type Na+/H+ and K+/H+ antiporters; NhaP-type Na(+)/H(+) exchanger 1898772..1900844 Bifidobacterium animalis subsp. lactis Bl-04 8009530 YP_002969001.1 CDS Balac_1604 NC_012814.1 1900915 1901853 R COG0400 Predicted esterase; phospholipase/carboxylesterase complement(1900915..1901853) Bifidobacterium animalis subsp. lactis Bl-04 8009531 YP_002969002.1 CDS Balac_1605 NC_012814.1 1901896 1903455 R hypothetical protein complement(1901896..1903455) Bifidobacterium animalis subsp. lactis Bl-04 8009532 YP_002969003.1 CDS dcd NC_012814.1 1903505 1904086 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(1903505..1904086) Bifidobacterium animalis subsp. lactis Bl-04 8009533 YP_002969004.1 CDS Balac_1607 NC_012814.1 1904296 1907286 R COG0474 Cation transport ATPase; cation-transporting ATPase PacL complement(1904296..1907286) Bifidobacterium animalis subsp. lactis Bl-04 8009534 YP_002969005.1 CDS Balac_1608 NC_012814.1 1907601 1908596 D COG0566 rRNA methylases; tRNA/rRNA methyltransferase protein 1907601..1908596 Bifidobacterium animalis subsp. lactis Bl-04 8009535 YP_002969006.1 CDS Balac_1609 NC_012814.1 1908745 1910193 R COG0515 Serine/threonine protein kinase; hypothetical protein complement(1908745..1910193) Bifidobacterium animalis subsp. lactis Bl-04 8009536 YP_002969007.1 CDS Balac_1610 NC_012814.1 1910401 1911534 R COG3839 ABC-type sugar transport systems, ATPase components; sugar ABC transporter ATP binding protein complement(1910401..1911534) Bifidobacterium animalis subsp. lactis Bl-04 8009537 YP_002969008.1 CDS Balac_1611 NC_012814.1 1911958 1912980 D COG1226 Kef-type K+ transport systems, predictedNAD-binding component; Kef-type K+ transport systems NAD-binding protein 1911958..1912980 Bifidobacterium animalis subsp. lactis Bl-04 8009538 YP_002969009.1 CDS Balac_1612 NC_012814.1 1913050 1915167 D COG0515 Serine/threonine protein kinase; hypothetical protein 1913050..1915167 Bifidobacterium animalis subsp. lactis Bl-04 8009539 YP_002969010.1 CDS Balac_1613 NC_012814.1 1915547 1916584 D COG1651 Protein-disulfide isomerase; hypothetical protein 1915547..1916584 Bifidobacterium animalis subsp. lactis Bl-04 8009540 YP_002969011.1 CDS Balac_1615 NC_012814.1 1917252 1918799 D COG3583 Uncharacterized protein conserved in bacteria; hypothetical protein 1917252..1918799 Bifidobacterium animalis subsp. lactis Bl-04 8009621 YP_002969012.1 CDS ksgA NC_012814.1 1918941 1919834 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1918941..1919834 Bifidobacterium animalis subsp. lactis Bl-04 8009542 YP_002969013.1 CDS Balac_1617 NC_012814.1 1919831 1920787 D COG0030 Dimethyladenosine transferase (rRNAmethylation); dimethyladenosine transferase 1919831..1920787 Bifidobacterium animalis subsp. lactis Bl-04 8009543 YP_002969014.1 CDS Balac_1618 NC_012814.1 1920859 1921485 D hypothetical protein 1920859..1921485 Bifidobacterium animalis subsp. lactis Bl-04 8009544 YP_002969015.1 CDS Balac_1619 NC_012814.1 1921615 1923123 R COG0617 tRNA nucleotidyltransferase/poly(Apolymerase); RNA nucleotidyltransferase complement(1921615..1923123) Bifidobacterium animalis subsp. lactis Bl-04 8009545 YP_002969016.1 CDS Balac_1620 NC_012814.1 1923219 1924223 D COG0494 NTP pyrophosphohydrolases includingoxidative damage repair enzymes; hypothetical protein 1923219..1924223 Bifidobacterium animalis subsp. lactis Bl-04 8009546 YP_002969017.1 CDS Balac_1621 NC_012814.1 1924226 1926475 D hypothetical protein 1924226..1926475 Bifidobacterium animalis subsp. lactis Bl-04 8009547 YP_002969018.1 CDS Balac_1622 NC_012814.1 1926472 1930494 D COG0728 Uncharacterized membrane protein, putativevirulence factor; hypothetical protein 1926472..1930494 Bifidobacterium animalis subsp. lactis Bl-04 8009548 YP_002969019.1 CDS Balac_1623 NC_012814.1 1930735 1931697 D COG0492 Thioredoxin reductase; thioredoxin reductase 1930735..1931697 Bifidobacterium animalis subsp. lactis Bl-04 8009549 YP_002969020.1 CDS Balac_1624 NC_012814.1 1931807 1933195 R COG1475 Predicted transcriptional regulators; chromosome partitioning protein complement(1931807..1933195) Bifidobacterium animalis subsp. lactis Bl-04 8009550 YP_002969021.1 CDS Balac_1625 NC_012814.1 1933195 1934169 R COG1192 ATPases involved in chromosomepartitioning; ATPase for chromosome partitioning complement(1933195..1934169) Bifidobacterium animalis subsp. lactis Bl-04 8009551 YP_002969022.1 CDS gidB NC_012814.1 1934803 1935546 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(1934803..1935546) Bifidobacterium animalis subsp. lactis Bl-04 8009552 YP_002969023.1 CDS Balac_1627 NC_012814.1 1936002 1936544 R COG1847 Predicted RNA-binding protein; hypothetical protein complement(1936002..1936544) Bifidobacterium animalis subsp. lactis Bl-04 8009553 YP_002969024.1 CDS Balac_1628 NC_012814.1 1936667 1937677 R COG0706 Preprotein translocase subunit YidC; Preprotein translocase subunit complement(1936667..1937677) Bifidobacterium animalis subsp. lactis Bl-04 8009554 YP_002969025.1 CDS Balac_1629 NC_012814.1 1937678 1937971 R COG0759 Uncharacterized conserved protein; hypothetical protein complement(1937678..1937971) Bifidobacterium animalis subsp. lactis Bl-04 8009555 YP_002969026.1 CDS Balac_1630 NC_012814.1 1937992 1938348 R COG0594 RNase P protein component; ribonuclease P protein component complement(1937992..1938348) Bifidobacterium animalis subsp. lactis Bl-04 8009556 YP_002969027.1 CDS rpmH NC_012814.1 1938361 1938495 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(1938361..1938495) Bifidobacterium animalis subsp. lactis Bl-04 8009557 Balac_0016 tRNA Balac_0016 NC_012814.1 19649 19721 R tRNA-Ala complement(19649..19721) Bifidobacterium animalis subsp. lactis Bl-04 8008007 Balac_0017 tRNA Balac_0017 NC_012814.1 19753 19826 R tRNA-Ile complement(19753..19826) Bifidobacterium animalis subsp. lactis Bl-04 8009558 Balac_0098 tRNA Balac_0098 NC_012814.1 111926 112011 R tRNA-Leu complement(111926..112011) Bifidobacterium animalis subsp. lactis Bl-04 8008087 Balac_0105 tRNA Balac_0105 NC_012814.1 122476 122549 R tRNA-Gly complement(122476..122549) Bifidobacterium animalis subsp. lactis Bl-04 8008093 Balac_0186 tRNA Balac_0186 NC_012814.1 217391 217463 R tRNA-Lys complement(217391..217463) Bifidobacterium animalis subsp. lactis Bl-04 8008173 Balac_0237 tRNA Balac_0237 NC_012814.1 284730 284805 D tRNA-Glu 284730..284805 Bifidobacterium animalis subsp. lactis Bl-04 8008223 Balac_0238 tRNA Balac_0238 NC_012814.1 284838 284912 D tRNA-Gln 284838..284912 Bifidobacterium animalis subsp. lactis Bl-04 8009563 Balac_0290 tRNA Balac_0290 NC_012814.1 356963 357047 R tRNA-Leu complement(356963..357047) Bifidobacterium animalis subsp. lactis Bl-04 8008274 Balac_0291 tRNA Balac_0291 NC_012814.1 357105 357180 R tRNA-Thr complement(357105..357180) Bifidobacterium animalis subsp. lactis Bl-04 8009565 Balac_0307 tRNA Balac_0307 NC_012814.1 377822 377897 D tRNA-Trp 377822..377897 Bifidobacterium animalis subsp. lactis Bl-04 8008289 Balac_0319 tRNA Balac_0319 NC_012814.1 397186 397259 D tRNA-Gly 397186..397259 Bifidobacterium animalis subsp. lactis Bl-04 8008300 Balac_0360 tRNA Balac_0360 NC_012814.1 445870 445951 D tRNA-Tyr 445870..445951 Bifidobacterium animalis subsp. lactis Bl-04 8008340 Balac_0361 tRNA Balac_0361 NC_012814.1 445953 446027 D tRNA-Thr 445953..446027 Bifidobacterium animalis subsp. lactis Bl-04 8009569 Balac_0362 tRNA Balac_0362 NC_012814.1 446029 446105 D tRNA-Met 446029..446105 Bifidobacterium animalis subsp. lactis Bl-04 8009570 Balac_0369 tRNA Balac_0369 NC_012814.1 452771 452861 D tRNA-Ser 452771..452861 Bifidobacterium animalis subsp. lactis Bl-04 8008346 Balac_0411 tRNA Balac_0411 NC_012814.1 485205 485293 R tRNA-Ser complement(485205..485293) Bifidobacterium animalis subsp. lactis Bl-04 8008387 Balac_0422 tRNA Balac_0422 NC_012814.1 498893 498980 R tRNA-Ser complement(498893..498980) Bifidobacterium animalis subsp. lactis Bl-04 8008397 Balac_0436 tRNA Balac_0436 NC_012814.1 516189 516262 R tRNA-Pro complement(516189..516262) Bifidobacterium animalis subsp. lactis Bl-04 8008410 Balac_0462 tRNA Balac_0462 NC_012814.1 549316 549390 D tRNA-Glu 549316..549390 Bifidobacterium animalis subsp. lactis Bl-04 8008435 Balac_0488 tRNA Balac_0488 NC_012814.1 581502 581578 D tRNA-Asp 581502..581578 Bifidobacterium animalis subsp. lactis Bl-04 8008460 Balac_0489 tRNA Balac_0489 NC_012814.1 581612 581688 D tRNA-Asp 581612..581688 Bifidobacterium animalis subsp. lactis Bl-04 8009577 Balac_0490 tRNA Balac_0490 NC_012814.1 581713 581788 D tRNA-Phe 581713..581788 Bifidobacterium animalis subsp. lactis Bl-04 8009578 Balac_0508 tRNA Balac_0508 NC_012814.1 602650 602723 D tRNA-Met 602650..602723 Bifidobacterium animalis subsp. lactis Bl-04 8008477 Balac_0587 tRNA Balac_0587 NC_012814.1 693425 693498 D tRNA-Arg 693425..693498 Bifidobacterium animalis subsp. lactis Bl-04 8008555 Balac_0615 tRNA Balac_0615 NC_012814.1 726020 726095 R tRNA-His complement(726020..726095) Bifidobacterium animalis subsp. lactis Bl-04 8008582 Balac_0743 tRNA Balac_0743 NC_012814.1 877622 877695 D tRNA-Gln 877622..877695 Bifidobacterium animalis subsp. lactis Bl-04 8008709 Balac_0748 tRNA Balac_0748 NC_012814.1 881420 881495 D tRNA-Ala 881420..881495 Bifidobacterium animalis subsp. lactis Bl-04 8008713 Balac_0749 tRNA Balac_0749 NC_012814.1 881541 881616 D tRNA-Ala 881541..881616 Bifidobacterium animalis subsp. lactis Bl-04 8009584 Balac_0762 tRNA Balac_0762 NC_012814.1 895040 895115 D tRNA-Asn 895040..895115 Bifidobacterium animalis subsp. lactis Bl-04 8008725 Balac_0764 tRNA Balac_0764 NC_012814.1 895848 895923 D tRNA-Asn 895848..895923 Bifidobacterium animalis subsp. lactis Bl-04 8008726 Balac_0809 tRNA Balac_0809 NC_012814.1 937317 937390 R tRNA-Pro complement(937317..937390) Bifidobacterium animalis subsp. lactis Bl-04 8008770 Balac_0829 tRNA Balac_0829 NC_012814.1 957448 957520 R tRNA-Gly complement(957448..957520) Bifidobacterium animalis subsp. lactis Bl-04 8008789 Balac_0833 tRNA Balac_0833 NC_012814.1 959394 959469 R tRNA-Val complement(959394..959469) Bifidobacterium animalis subsp. lactis Bl-04 8008792 Balac_0834 tRNA Balac_0834 NC_012814.1 959500 959574 R tRNA-Val complement(959500..959574) Bifidobacterium animalis subsp. lactis Bl-04 8009590 Balac_0835 tRNA Balac_0835 NC_012814.1 959603 959676 R tRNA-Cys complement(959603..959676) Bifidobacterium animalis subsp. lactis Bl-04 8009591 Balac_0836 tRNA Balac_0836 NC_012814.1 959704 959779 R tRNA-Gly complement(959704..959779) Bifidobacterium animalis subsp. lactis Bl-04 8009592 Balac_0910 tRNA Balac_0910 NC_012814.1 1047338 1047428 D tRNA-Leu 1047338..1047428 Bifidobacterium animalis subsp. lactis Bl-04 8008865 Balac_0975 tRNA Balac_0975 NC_012814.1 1114193 1114269 R tRNA-Pro complement(1114193..1114269) Bifidobacterium animalis subsp. lactis Bl-04 8008929 Balac_0983 tRNA Balac_0983 NC_012814.1 1124097 1124173 R tRNA-Leu complement(1124097..1124173) Bifidobacterium animalis subsp. lactis Bl-04 8008936 Balac_1013 tRNA Balac_1013 NC_012814.1 1158993 1159074 R tRNA-Leu complement(1158993..1159074) Bifidobacterium animalis subsp. lactis Bl-04 8008965 Balac_1074 tRNA Balac_1074 NC_012814.1 1232067 1232143 R tRNA-Arg complement(1232067..1232143) Bifidobacterium animalis subsp. lactis Bl-04 8009025 Balac_1075 tRNA Balac_1075 NC_012814.1 1232190 1232263 R tRNA-Arg complement(1232190..1232263) Bifidobacterium animalis subsp. lactis Bl-04 8009598 Balac_1252 tRNA Balac_1252 NC_012814.1 1446907 1446980 D tRNA-Val 1446907..1446980 Bifidobacterium animalis subsp. lactis Bl-04 8009201 Balac_1280 tRNA Balac_1280 NC_012814.1 1477600 1477674 D tRNA-Val 1477600..1477674 Bifidobacterium animalis subsp. lactis Bl-04 8009603 Balac_1281 tRNA Balac_1281 NC_012814.1 1477699 1477771 D tRNA-Gly 1477699..1477771 Bifidobacterium animalis subsp. lactis Bl-04 8009604 Balac_1319 tRNA Balac_1319 NC_012814.1 1528377 1528449 D tRNA-Arg 1528377..1528449 Bifidobacterium animalis subsp. lactis Bl-04 8009262 Balac_1422 tRNA Balac_1422 NC_012814.1 1671423 1671498 R tRNA-Arg complement(1671423..1671498) Bifidobacterium animalis subsp. lactis Bl-04 8009364 Balac_1439 tRNA Balac_1439 NC_012814.1 1688445 1688521 D tRNA-Met 1688445..1688521 Bifidobacterium animalis subsp. lactis Bl-04 8009380 Balac_1493 tRNA Balac_1493 NC_012814.1 1756426 1756502 R tRNA-Lys complement(1756426..1756502) Bifidobacterium animalis subsp. lactis Bl-04 8009433 Balac_1526 tRNA Balac_1526 NC_012814.1 1794770 1794854 D tRNA-Ser 1794770..1794854 Bifidobacterium animalis subsp. lactis Bl-04 8009462 Balac_1549 tRNA Balac_1549 NC_012814.1 1826768 1826843 D tRNA-Ala 1826768..1826843 Bifidobacterium animalis subsp. lactis Bl-04 8009483 Balac_1614 tRNA Balac_1614 NC_012814.1 1916798 1916874 D tRNA-Thr 1916798..1916874 Bifidobacterium animalis subsp. lactis Bl-04 8009541 Balac_1277 rRNA Balac_1277 NC_012814.1 1471137 1471253 R 5S ribosomal RNA complement(1471137..1471253) Bifidobacterium animalis subsp. lactis Bl-04 8009225 Balac_1278 rRNA Balac_1278 NC_012814.1 1471333 1474459 R 23S ribosomal RNA complement(1471333..1474459) Bifidobacterium animalis subsp. lactis Bl-04 8009601 Balac_1279 rRNA Balac_1279 NC_012814.1 1474903 1476451 R 16S ribosomal RNA complement(1474903..1476451) Bifidobacterium animalis subsp. lactis Bl-04 8009602 Balac_1505 rRNA Balac_1505 NC_012814.1 1766178 1766294 R 5S ribosomal RNA complement(1766178..1766294) Bifidobacterium animalis subsp. lactis Bl-04 8009444 Balac_1506 rRNA Balac_1506 NC_012814.1 1766374 1769500 R 23S ribosomal RNA complement(1766374..1769500) Bifidobacterium animalis subsp. lactis Bl-04 8009610 Balac_1507 rRNA Balac_1507 NC_012814.1 1769944 1771492 R 16S ribosomal RNA complement(1769944..1771492) Bifidobacterium animalis subsp. lactis Bl-04 8009611 Balac_1579 rRNA Balac_1579 NC_012814.1 1862407 1862523 R 5S ribosomal RNA complement(1862407..1862523) Bifidobacterium animalis subsp. lactis Bl-04 8009512 Balac_1580 rRNA Balac_1580 NC_012814.1 1862603 1865729 R 23S ribosomal RNA complement(1862603..1865729) Bifidobacterium animalis subsp. lactis Bl-04 8009615 Balac_1581 rRNA Balac_1581 NC_012814.1 1866173 1867721 R 16S ribosomal RNA complement(1866173..1867721) Bifidobacterium animalis subsp. lactis Bl-04 8009616 Balac_1585 rRNA Balac_1585 NC_012814.1 1871117 1871233 R 5S ribosomal RNA complement(1871117..1871233) Bifidobacterium animalis subsp. lactis Bl-04 8009515 Balac_1586 rRNA Balac_1586 NC_012814.1 1871313 1874439 R 23S ribosomal RNA complement(1871313..1874439) Bifidobacterium animalis subsp. lactis Bl-04 8009618 Balac_1587 rRNA Balac_1587 NC_012814.1 1874883 1876432 R 16S ribosomal RNA complement(1874883..1876432) Bifidobacterium animalis subsp. lactis Bl-04 8009619