-- dump date 20140619_002834 -- class Genbank::CDS -- table cds_note -- id note YP_002321515.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_002321516.1 KEGG: blo:BL0639 hypothetical protein YP_002321517.1 binds the polymerase to DNA and acts as a sliding clamp YP_002321518.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: blo:BL0637 recombination protein RecF YP_002321519.1 KEGG: blo:BL0636 hypothetical protein similar to orf 192 of M. smegmatis YP_002321520.1 negatively supercoils closed circular double-stranded DNA YP_002321521.1 negatively supercoils closed circular double-stranded DNA YP_002321522.1 KEGG: blo:BL0633 hypothetical protein YP_002321523.1 PFAM: DUF234 DEXX-box ATPase; ATPase; KEGG: blo:BL0631 hypothetical protein YP_002321525.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_002321526.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: dsy:DSY2033 hypothetical protein YP_002321527.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: tde:TDE0506 DNA-damage-inducible protein J YP_002321531.1 PFAM: metallophosphoesterase; KEGG: efa:EF2902 2',3'-cyclic-nucleotide 2'-phosphodiesterase YP_002321532.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lac:LBA0154 phosphonate ABC transporter YP_002321533.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lca:LSEI_2447 ABC-type phosphate/phosphonate transport system, permease component YP_002321534.1 KEGG: btk:BT9727_3440 phosphonate ABC transporter, ATP-binding protein; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter; SMART: AAA ATPase YP_002321535.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; PFAM: NLPA lipoprotein; KEGG: sha:SH0318 hypothetical protein YP_002321536.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: rso:RSp1556 transcription regulation repressor HexR transcription regulator protein YP_002321537.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cgb:cg1653 phosphoglycolate phosphatase YP_002321538.1 KEGG: blo:BL0622 hypothetical protein YP_002321539.1 PFAM: protein of unknown function DUF45; KEGG: blo:BL0621 narrowly conserved hypothetical protein with duf45 YP_002321540.1 KEGG: blo:BL0619 hypothetical protein YP_002321541.1 PFAM: Ferritin, Dps family protein; KEGG: blo:BL0618 hypothetical protein in DPS family YP_002321542.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: blo:BL0617 widely conserved hypothetical protein with duf21 and CBS domains YP_002321543.1 KEGG: blo:BL0662 hypothetical protein YP_002321544.1 PFAM: carbonic anhydrase; KEGG: blo:BL0616 probable carbonic anhydrase YP_002321545.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: blo:BL0615 alkyl hydroperoxide reductase C22 protein YP_002321546.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: blo:BL0614 thioredoxin reductase-like protein YP_002321547.1 PFAM: major facilitator superfamily MFS_1; KEGG: blo:BL0613 probable integral membrane transporter YP_002321548.1 KEGG: bfs:BF4074 hypothetical protein YP_002321549.1 PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: bad:BAD_1279 IS3 family transposase YP_002321550.1 PFAM: transposase, mutator type; KEGG: bja:bll2163 transposase YP_002321551.1 KEGG: aau:AAur_3217 hypothetical protein YP_002321552.1 PFAM: regulatory protein, LacI; KEGG: bad:BAD_1584 LacI-family transcriptional regulator YP_002321553.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bad:BAD_1585 solute-binding lipoprotein YP_002321554.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1586 ABC transporter_ membrane spanning protein[sugar] YP_002321555.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1587 sugar permeases YP_002321556.1 KEGG: bad:BAD_1588 hypothetical protein YP_002321557.1 KEGG: bad:BAD_0438 possible xylan esterase YP_002321558.1 KEGG: dsy:DSY4975 hypothetical protein YP_002321559.1 KEGG: conserved hypothetical protein, ATPase YP_002321560.1 PFAM: AAA-4 family protein; KEGG: blo:BL0609 hypothetical protein possibly related to helicases YP_002321561.1 PFAM: extracellular solute-binding protein, family 5; KEGG: cac:CAC3179 oligopeptide ABC transporter, periplasmic binding component YP_002321562.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC3180 oligopeptide ABC transporter, permease component YP_002321563.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC3181 oligopeptide ABC transporter, permease component YP_002321564.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: chu:CHU_0463 ABC transporter, ATP-binding protein YP_002321565.1 KEGG: bad:BAD_0022 hypothetical protein YP_002321566.1 KEGG: blo:BL0605 hypothetical protein YP_002321567.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: blo:BL0604 phosphoenolpyruvate carboxylase YP_002321568.1 PFAM: protein of unknown function DUF1212; KEGG: blo:BL0603 narrowly conserved hypothetical protein YP_002321569.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: blo:BL0602 possible sodium/proline symporter YP_002321570.1 KEGG: bad:BAD_0420 hypothetical protein YP_002321571.1 PFAM: Amidohydrolase 3; KEGG: blo:BL0601 widely conserved hypothetical protein YP_002321572.1 KEGG: blo:BL0600 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib YP_002321573.1 KEGG: blo:BL0599 hypothetical protein YP_002321574.1 PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; KEGG: bad:BAD_0055 response regulator of two-component system YP_002321575.1 KEGG: bad:BAD_0054 exodeoxyribonuclease V YP_002321576.1 PFAM: major facilitator superfamily MFS_1; KEGG: bad:BAD_0219 hypothetical protein YP_002321577.1 KEGG: blo:BL0598 narrowly conserved hypothetical protein YP_002321578.1 KEGG: blo:BL0597 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35 YP_002321579.1 KEGG: blo:BL0595 hypothetical protein YP_002321580.1 PFAM: Rhomboid family protein; KEGG: blo:BL0594 conserved membrane protein in rhomboid family YP_002321581.1 integral membrane protein involved in inhibition of the Z-ring formation YP_002321582.1 PFAM: protein of unknown function DUF881; KEGG: blo:BL0592 narrowly conserved hypothetical protein YP_002321583.1 TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: blo:BL0591 hypothetical transmembrane protein with unknown function YP_002321584.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: blo:BL0590 para-aminobenzoate synthase glutamine amidotransferase component II YP_002321585.1 PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: blo:BL0589 probable serine/threonine-protein kinase PknB YP_002321586.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: blo:BL0588 probable serine-threonine protein kinase YP_002321587.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: blo:BL0587 probable penicillin binding protein transpeptidase YP_002321588.1 PFAM: cell cycle protein; KEGG: blo:BL0586 protein involved in cell wall formation and stabilization of the FtsZ ring during cell division YP_002321589.1 PFAM: protein phosphatase 2C domain protein; KEGG: blo:BL0585 possible phosphoprotein phosphatase YP_002321590.1 PFAM: Forkhead-associated protein; KEGG: blo:BL0584 hypothetical protein with FHA domain YP_002321591.1 PFAM: Forkhead-associated protein; KEGG: blo:BL0583 hypothetical protein with FHA domain YP_002321592.1 PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: blo:BL0582 probable dipeptidyl peptidase IV YP_002321593.1 PFAM: alpha/beta hydrolase fold; KEGG: blo:BL0581 hypothetical protein with alpha beta hydrolase domain at C-terminus YP_002321594.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: blo:BL0575 narrowly conserved hypothetical protein YP_002321595.1 KEGG: bad:BAD_0626 hypothetical protein YP_002321596.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: blo:BL0570 hypothetical protein YP_002321597.1 TIGRFAM: peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; Methionine sulfoxide reductase B; KEGG: blo:BL0568 peptide methionine sulfoxide reductase YP_002321598.1 KEGG: blo:BL0567 hypothetical protein YP_002321599.1 KEGG: tbd:Tbd_1811 hypothetical protein YP_002321600.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: plu:plu0600 hypothetical protein YP_002321601.1 PFAM: protein of unknown function DUF74; KEGG: blo:BL0562 hypothetical protein YP_002321602.1 PFAM: Hly-III family protein; KEGG: blo:BL0560 hypothetical transmembrane protein with unknown function YP_002321603.1 PFAM: heat shock protein Hsp20; KEGG: blo:BL0576 probable HSP20-family heat shock chaperone YP_002321604.1 PFAM: ThiJ/PfpI domain protein; KEGG: sab:SAB2084 hypothetical protein YP_002321608.1 KEGG: blo:BL0556 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_002321609.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: blo:BL0555 possible DO serine protease YP_002321610.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: blo:BL0554 probable cation-transporting ATPase V YP_002321611.1 PFAM: Extracellular ligand-binding receptor; KEGG: cgb:cg1061 ABC-type branched-chain amino acid transport systems, secreted component YP_002321612.1 PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro02127 ABC branched amino acid transporter, permease component YP_002321613.1 PFAM: inner-membrane translocator; KEGG: rha:RHA1_ro02128 ABC branched amino acid transporter, permease component YP_002321614.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: mkm:Mkms_2335 ABC transporter YP_002321615.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: nfa:nfa52580 ABC transporter ATP-binding protein YP_002321616.1 TIGRFAM: high-affinity nickel-transporter; KEGG: sab:SAB2574 probable high-affinity nickel-transport protein YP_002321617.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_002321618.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_002321619.1 PFAM: UreE urease accessory domain protein; KEGG: hit:NTHI0664 urease accessory protein UreE YP_002321620.1 PFAM: Urease accessory protein UreF; KEGG: ste:STER_0327 urease accessory protein UreF YP_002321621.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; KEGG: hin:HI0536 urease accessory protein ureG YP_002321622.1 PFAM: Urease accessory protein UreD; KEGG: hhe:HH0413 urease accessory protein UreH YP_002321623.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: blo:BL0552 probable ferredoxin/ferredoxin-NADP reductase YP_002321624.1 metalloprotease YP_002321625.1 PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_3466 major facilitator superfamily MFS_1 YP_002321626.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: cdi:DIP0828 DNA repair protein YP_002321627.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_002321628.1 KEGG: mgm:Mmc1_0004 ATP binding protein YP_002321630.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002321631.1 PFAM: Cl- channel, voltage-gated family protein; TrkA-C domain protein; KEGG: blo:BL0548 probable voltage gated channel protein YP_002321632.1 PFAM: Camphor resistance CrcB protein; KEGG: bad:BAD_0069 protein CrcB homolog 2 YP_002321633.1 PFAM: Camphor resistance CrcB protein; KEGG: blo:BL0547 hypothetical transmembrane protein with unknown function YP_002321634.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: blo:BL0546 LacI-type transcriptional regulator YP_002321635.1 KEGG: blo:BL0536 sucrose phosphorylase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_002321636.1 PFAM: major facilitator superfamily MFS_1; KEGG: blo:BL0534 hypothetical transmembrane protein with unknown function YP_002321637.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: blo:BL0532 transmembrane transport protein possibly for shikimate YP_002321638.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002321639.1 PFAM: cobalt transport protein; KEGG: rha:RHA1_ro05259 hypothetical protein YP_002321640.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: lxx:Lxx20910 ABC- transporter, ATP-binding protein YP_002321641.1 PFAM: BioY protein; KEGG: lxx:Lxx20880 biotin synthase YP_002321642.1 PFAM: zinc finger, CHY domain protein; KEGG: sce:YKL084W Mitochondrial intermembrane space protein, first component of a pathway mediating assembly of small TIM (Translocase of the Inner Membrane) complexes which escort hydrophobic inner membrane proteins en route to the TIM22 complex YP_002321643.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002321644.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: blo:BL0529 probable alpha-1,4-glucosidase; maltase-like enzyme YP_002321645.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: blo:BL0528 probable LacI-type transcriptional regulator YP_002321646.1 KEGG: blo:BL0527 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77 YP_002321647.1 PFAM: Alkaline phosphatase; KEGG: bad:BAD_1548 alkaline phosphatase YP_002321648.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002321649.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_002321650.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: blo:BL0517 chaperone protein similar to DnaJ YP_002321651.1 PFAM: regulatory protein, MerR; KEGG: blo:BL0516 probable MerR-type-transcriptional regulator YP_002321652.1 PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: blo:BL0515 hypothetical transmembrane protein in xanthine/uracil permeases family YP_002321653.1 KEGG: blo:BL0514 possible acyl protein synthase/acyl-CoA reductase-like protein YP_002321654.1 PFAM: acyl-CoA reductase; KEGG: blo:BL0513 possible acyl-CoA reductase YP_002321655.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: blo:BL0512 3-oxoacyl-[acyl-carrier protein] reductase YP_002321656.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: blo:BL0511 hypothetical protein in haloacid dehalogenase-like hydrolase family YP_002321657.1 KEGG: blo:BL0510 DedA integral membrane protein YP_002321658.1 KEGG: blo:BL0509 hypothetical protein YP_002321659.1 PFAM: type II secretion system protein E; KEGG: blo:BL0508 hypothetical protein possibly involved in adherence YP_002321660.1 KEGG: blo:BL0507 hypothetical protein YP_002321661.1 KEGG: blo:BL0506 hypothetical membrane protein with unknown function YP_002321662.1 KEGG: blo:BL0505 hypothetical protein YP_002321663.1 PFAM: TadE family protein; KEGG: blo:BL0504 hypothetical protein YP_002321664.1 KEGG: blo:BL0503 hypothetical protein YP_002321665.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: blo:BL0502 narrowly conserved hypothetical protein with possible diacylglycerol kinase domain YP_002321666.1 PFAM: regulatory protein, TetR; KEGG: blo:BL0501 possible TetR-type transcriptional regulator YP_002321667.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_002321668.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002321669.1 TIGRFAM: sortase family protein; PFAM: peptidase C60, sortase A and B; KEGG: blo:BL0498 possible sortase-like protein YP_002321670.1 KEGG: blo:BL0495 narrowly conserved hypothetical protein YP_002321671.1 KEGG: blo:BL0494 aspartokinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_002321672.1 PFAM: amino acid-binding ACT domain protein; KEGG: blo:BL0493 aspartokinase YP_002321673.1 catalyzes the formation of aspartate semialdehyde from aspartyl phosphate YP_002321674.1 KEGG: blo:BL0491 hypothetical protein YP_002321675.1 PFAM: metallophosphoesterase; KEGG: blo:BL0490 hypothetical protein YP_002321676.1 KEGG: blo:BL0489 hypothetical protein YP_002321677.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: blo:BL0488 2-isopropylmalate synthase YP_002321678.1 PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: blo:BL0487 probable penicillin-binding protein YP_002321679.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: blo:BL0486 possible pre-pilin peptidase YP_002321680.1 KEGG: blo:BL0485 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein YP_002321681.1 PFAM: thymidylate kinase; KEGG: blo:BL0484 thymidylate kinase YP_002321682.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_002321683.1 PFAM: regulatory protein, LacI; KEGG: bad:BAD_0164 LacI-family transcriptional regulator YP_002321684.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pac:PPA0352 phosphocarrier protein HPr YP_002321685.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: bad:BAD_0166 PTS system, enzyme I YP_002321686.1 KEGG: bad:BAD_0167 hypothetical protein YP_002321687.1 PFAM: peptidase U34, dipeptidase; KEGG: blo:BL0479 dipeptidase YP_002321688.1 PFAM: formate-tetrahydrofolate ligase, FTHFS; KEGG: blo:BL0478 formate--tetrahydrofolate ligase YP_002321689.1 KEGG: blo:BL0477 hypothetical protein YP_002321690.1 PFAM: GtrA family protein; KEGG: blo:BL0476 narrowly conserved hypothetical membrane protein YP_002321691.1 PFAM: AAA-4 family protein; KEGG: mbu:Mbur_0507 divergent AAA ATPase YP_002321692.1 PFAM: major facilitator superfamily MFS_1; KEGG: blo:BL0475 hypothetical membrane protein with unknown function YP_002321693.1 PFAM: Phosphoglycerate mutase; KEGG: blo:BL0474 hypothetical protein with possible phosphoglycerate mutase domain YP_002321694.1 KEGG: blo:BL0473 hypothetical protein YP_002321695.1 PFAM: Aldose 1-epimerase; KEGG: blo:BL0472 widely conserved hypothetical protein YP_002321696.1 PFAM: protein of unknown function DUF805; KEGG: blo:BL0471 narrowly conserved hypothetical protein YP_002321697.1 KEGG: bad:BAD_0976 conserved hypothetical phage AbiD protein YP_002321698.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002321699.1 KEGG: blo:BL1490 hypothetical protein YP_002321700.1 PFAM: protein of unknown function DUF1275; KEGG: sma:SAV5843 hypothetical protein YP_002321701.1 PFAM: AAA-4 family protein; KEGG: maq:Maqu_0558 transcriptional regulator YP_002321702.1 KEGG: blo:BL0206 hypothetical membrane protein with unknown function YP_002321703.1 PFAM: iron permease FTR1; KEGG: blo:BL0455 high-affinity iron transporter YP_002321704.1 KEGG: blo:BL0454 narrowly conserved hypothetical protein YP_002321705.1 KEGG: blo:BL0453 narrowly conserved hypothetical membrane protein YP_002321706.1 PFAM: protein of unknown function DUF214; KEGG: blo:BL0452 possible permease protein of ABC transporter system YP_002321707.1 PFAM: protein of unknown function DUF214; KEGG: blo:BL0451 possible permease protein of ABC transporter system YP_002321708.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0450 ATP binding protein of ABC transporter YP_002321709.1 KEGG: blo:BL0449 hypothetical protein YP_002321710.1 PFAM: regulatory protein, TetR; KEGG: blo:BL0448 possible TetR-type transcriptional regulator YP_002321711.1 contains similarity to phage infection protein; KEGG: blo:BL0447 hypothetical membrane protein with similarity to phage infection protein YP_002321712.1 PFAM: ABC-2 type transporter; KEGG: blo:BL0446 hypothetical membrane protein with similarity to phage infection protein YP_002321713.1 PFAM: protein of unknown function DUF1113; KEGG: blo:BL0445 hypothetical protein YP_002321714.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_002321715.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: blo:BL0443 probable 6-phosphogluconolactonase YP_002321716.1 KEGG: blo:BL0441 narrowly conserved hypothetical protein YP_002321717.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002321718.1 KEGG: blo:BL0701 hypothetical protein YP_002321721.1 PFAM: major facilitator superfamily MFS_1; KEGG: bad:BAD_0219 hypothetical protein YP_002321722.1 PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; Sigma-70, region 4 type 2; KEGG: bad:BAD_1442 two-component response regulator YP_002321723.1 KEGG: bad:BAD_1443 hypothetical protein YP_002321725.1 PFAM: peptidase U34, dipeptidase; KEGG: blo:BL0439 dipeptidase YP_002321726.1 PFAM: glycosyl transferase, family 2; KEGG: bad:BAD_0109 probable glycosyltransferase YP_002321727.1 PFAM: regulatory protein, TetR; KEGG: blo:BL0437 probable TetR-type transcriptional regulator YP_002321728.1 KEGG: mba:Mbar_A0863 hypothetical protein YP_002321729.1 KEGG: bad:BAD_0111 FtsY signal recognition particle; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase YP_002321730.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: blo:BL0435 possible ammonium ion transporter YP_002321731.1 PFAM: nitrogen regulatory protein P-II; KEGG: blo:BL0434 nitrogen regulatory protein N-II YP_002321732.1 PFAM: DNA polymerase, beta domain protein region; GlnD PII-uridylyltransferase; KEGG: blo:BL0433 protein-pII; uridylyltransferase YP_002321733.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: blo:BL0432 hypothetical protein in upf0013 YP_002321734.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; KEGG: blo:BL0431 replicative DNA helicase YP_002321735.1 PFAM: Mur ligase, middle domain protein; domain of unknown function DUF1727; KEGG: blo:BL0430 narrowly conserved hypothetical protein with Mur ligase domain YP_002321736.1 PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: blo:BL0429 possible cobyric acid synthase CobQ YP_002321737.1 KEGG: blo:BL0428 hypothetical protein YP_002321738.1 PFAM: protein of unknown function RIO1; ABC-1 domain protein; KEGG: blo:BL0427 hypothetical protein kinase in ABC1 family YP_002321739.1 PFAM: alanine racemase domain protein; KEGG: blo:BL0419 hypothetical protein in upf0001 YP_002321740.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002321741.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002321742.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002321743.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002321744.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002321745.1 KEGG: blo:BL0204 hypothetical protein YP_002321747.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: lin:lin1677 similar to similar to ABC transporter (ATP-binding protein) YP_002321748.1 PFAM: ABC-2 type transporter; KEGG: stl:stu0547 ABC transporter membrane-spanning protein YP_002321749.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: efa:EF1331 ABC transporter, ATP-binding protein YP_002321750.1 PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; KEGG: bad:BAD_0055 response regulator of two-component system YP_002321751.1 KEGG: bad:BAD_0046 hypothetical protein YP_002321752.1 PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_3466 major facilitator superfamily MFS_1 YP_002321753.1 PFAM: major facilitator superfamily MFS_1; KEGG: lca:LSEI_2749 permease of the major facilitator superfamily YP_002321754.1 PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: tma:TM0306 alpha-L-fucosidase YP_002321756.1 TIGRFAM: MIP family channel proteins; PFAM: major intrinsic protein; KEGG: blo:BL0410 glycerol uptake facilitator-like protein in Mip family YP_002321757.1 KEGG: blo:BL0409 copper-transporting ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_002321758.1 PFAM: protein of unknown function DUF156; KEGG: blo:BL0408 narrowly conserved hypothetical protein YP_002321759.1 PFAM: protein of unknown function DUF195; KEGG: blo:BL0407 conserved hypothetical protein with Duf195 YP_002321760.1 KEGG: blo:BL0406 hypothetical protein with similarity to streptomyces orf annotated as uridine 5'-monophosphate synthase YP_002321761.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: blo:BL0405 narrowly conserved hypothetical protein with possible methylase domain YP_002321763.1 KEGG: blo:BL1351 hypothetical protein YP_002321764.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_002321765.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002321766.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002321767.1 PFAM: GCN5-related N-acetyltransferase; KEGG: blo:BL0401 possible acetyltransferase YP_002321768.1 KEGG: art:Arth_2475 hypothetical protein YP_002321769.1 PFAM: histidine acid phosphatase; KEGG: blo:BL0400 hypothetical protein YP_002321770.1 PFAM: FAD dependent oxidoreductase; KEGG: blo:BL0399 hypothetical protein YP_002321771.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002321772.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: blo:BL1167 LacI-type transcriptional regulator YP_002321773.1 TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; KEGG: vpa:VP2394 sodium:galactoside symporter family protein YP_002321774.1 PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; KEGG: bcl:ABC3756 beta-galactosidase YP_002321775.1 PFAM: transposase, mutator type; KEGG: mva:Mvan_3425 transposase, mutator type YP_002321776.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: blo:BL0244 probable integrase/recombinase YP_002321777.1 catalyzes the interconversion of chorismate to prephenate YP_002321778.1 KEGG: blo:BL0396 hypothetical protein YP_002321779.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002321780.1 PFAM: extracellular solute-binding protein, family 5; KEGG: blo:BL0394 probable solute binding protein of ABC transporter system YP_002321781.1 KEGG: blo:BL0393 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_002321782.1 PFAM: transcriptional regulator domain protein; KEGG: blo:BL0392 possible transcriptional regulatory protein with low similarity to response regulators YP_002321783.1 KEGG: blo:BL0391 hypothetical protein YP_002321784.1 PFAM: protein of unknown function DUF204; KEGG: blo:BL0390 integral membrane protein in the upf0059 YP_002321785.1 PFAM: Inorganic pyrophosphatase; KEGG: blo:BL0389 inorganic pyrophosphatase YP_002321786.1 PFAM: alpha amylase, catalytic region; KEGG: blo:BL0388 possible glycanase or glycogenase with amylase domain YP_002321787.1 TIGRFAM: LPXTG-motif cell wall anchor domain; KEGG: blo:BL0387 hypothetical protein YP_002321789.1 KEGG: cac:CAC3022 alpha/beta superfamily hydrolase YP_002321790.1 KEGG: cac:CAC3356 lactoylglutathione lyase (LGUL) family protein, diverged YP_002321791.1 KEGG: sus:Acid_1828 hypothetical protein YP_002321792.1 PFAM: phage integrase family protein; KEGG: mta:Moth_1796 phage integrase YP_002321793.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mba:Mbar_A1186 glyoxalase YP_002321794.1 KEGG: tde:TDE1774 hypothetical protein YP_002321795.1 SMART: helix-turn-helix domain protein; KEGG: efa:EF1886 transcriptional regulator, Cro/CI family YP_002321798.1 PFAM: plasmid replication protein; KEGG: lpl:pWCFS102_02 replication protein YP_002321799.1 KEGG: fal:FRAAL2933 plasmid transfer protein YP_002321803.1 KEGG: noc:Noc_0411 helix-turn-helix protein, CopG family YP_002321804.1 PFAM: protein of unknown function DUF497; KEGG: vch:VCA0332 hypothetical protein YP_002321805.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_002321806.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002321807.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: blo:BL0362 ATP synthase C chain YP_002321808.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_002321809.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_002321810.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002321811.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002321812.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002321813.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_002321814.1 PFAM: protein of unknown function DUF91; KEGG: blo:BL0355 narrowly conserved hypothetical protein with Duf091 YP_002321815.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: blo:BL0354 possible secreted peptidyl-prolyl cis-trans isomerase protein YP_002321816.1 KEGG: blo:BL0353 hypothetical protein YP_002321817.1 KEGG: blo:BL0352 hypothetical protein YP_002321818.1 KEGG: blo:BL0350 hypothetical protein with marginal similarity to thioredoxin YP_002321819.1 PFAM: adenylate cyclase; KEGG: blo:BL0349 narrowly conserved hypothetical protein YP_002321820.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: blo:BL0348 hypothetical 14.5 kDa translational inhibitor protein YP_002321821.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: blo:BL0347 narrowly conserved hypothetical protein with acyl transferase domain YP_002321822.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002321823.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002321824.1 PFAM: extracellular solute-binding protein, family 1; KEGG: blo:BL0344 possible solute binding protein of ABC transporter system YP_002321825.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL0343 possible permease protein of ABC transporter system YP_002321826.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL0342 possible permease of ABC transporter YP_002321827.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: blo:BL0341 similar to ATP binding protein of ABC transporter YP_002321828.1 PFAM: Abortive infection protein; KEGG: blo:BL0340 hypothetical protein YP_002321829.1 PFAM: MscS Mechanosensitive ion channel; KEGG: blo:BL0339 hypothetical protein in upf0003 YP_002321830.1 catalyzes the formation of fumarate from aspartate YP_002321831.1 PFAM: regulatory protein, TetR; KEGG: blo:BL0337 hypothetical protein possibly in TetR transcriptional regulator family YP_002321832.1 KEGG: blo:BL0336 hypothetical protein YP_002321833.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: blo:BL0335 methylated-DNA--protein-cysteine methyltransferase YP_002321836.1 PFAM: RelB antitoxin; KEGG: lsl:LSL_0030 DNA-damage-inducible protein J YP_002321837.1 PFAM: regulatory protein, MerR; KEGG: spb:M28_Spy1569 transcriptional regulator, MerR family YP_002321838.1 PFAM: major facilitator superfamily MFS_1; KEGG: blo:BL0332 narrowly conserved hypothetical protein YP_002321839.1 PFAM: PfkB domain protein; KEGG: blo:BL0331 probable PfkB family carbohydrate (sugar) kinase YP_002321840.1 required for 70S ribosome assembly YP_002321841.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: blo:BL0329 ATP-dependent DNA helicase YP_002321842.1 KEGG: bad:BAD_0424 LacI-family transcriptional regulator YP_002321843.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1030 binding-protein dependent transport protein YP_002321844.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7409 binding-protein dependent transport protein. YP_002321845.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sco:SCO7408 probable solute-binding lipoprotein. YP_002321846.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; KEGG: aau:AAur_3801 mandelate racemase/muconate lactonizing enzyme YP_002321847.1 PFAM: major facilitator superfamily MFS_1; KEGG: lca:LSEI_2749 permease of the major facilitator superfamily YP_002321848.1 KEGG: rle:pRL120114 hypothetical protein YP_002321849.1 KEGG: cdi:DIP1756 DNA methyltransferase YP_002321850.1 KEGG: bte:BTH_II2277 transposase YP_002321851.1 TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: blo:BL0328 hypothetical protein with possible methylase domain YP_002321852.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002321853.1 PFAM: peptidase U32; KEGG: blo:BL0326 possible protease or peptidase YP_002321854.1 PFAM: protein of unknown function DUF152; KEGG: blo:BL0325 hypothetical protein YP_002321855.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Nucleotidyl transferase; KEGG: blo:BL0324 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_002321856.1 PFAM: peptidase C15, pyroglutamyl peptidase I; KEGG: blo:BL0323 pyrrolidone-carboxylate peptidase YP_002321857.1 KEGG: blo:BL0322 hypothetical protein YP_002321858.1 PFAM: peptidase C1B, bleomycin hydrolase; KEGG: blo:BL0321 aminopeptidase C YP_002321859.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_002321860.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_002321861.1 PFAM: purine and other phosphorylases, family 1; KEGG: blo:BL0318 probable MTA/SAH nucleosidase [includes: 5'-methylthioadenosine nucleosidase ; S-adenosylhomocysteine nucleosidase ] YP_002321862.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: blo:BL0532 transmembrane transport protein possibly for shikimate YP_002321863.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: blo:BL0317 histidine kinase sensor of two-component system YP_002321864.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: blo:BL0316 response regulator of two-component system YP_002321865.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: blo:BL0315 phosphate-binding transport protein of ABC transporter system YP_002321866.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL0314 probable phosphate permease protein of ABC transporter system YP_002321867.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL0313 probable phosphate binding-protein of ABC transporter system YP_002321868.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002321869.1 PFAM: LemA family protein; KEGG: blo:BL0311 LemA-like protein YP_002321870.1 KEGG: blo:BL0310 hypothetical protein YP_002321871.1 PFAM: aldo/keto reductase; KEGG: blo:BL0309 possible oxidoreductase of the aldo/keto reductase family YP_002321872.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: blo:BL0308 inosine-uridine preferring nucleoside hydrolase YP_002321873.1 PFAM: regulatory protein, LacI; KEGG: aau:AAur_3250 maltose operon transcriptional repressor, LacI family YP_002321874.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bad:BAD_1405 periplasmic binding (signal peptide) ABC transporter protein YP_002321875.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1404 ABC-type sugar transport systems, permease components YP_002321876.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1403 multiple sugar-binding transport system permease YP_002321877.1 KEGG: aor:AO090038000118 predicted protein Pfam: glyco_hydro_76 YP_002321878.1 PFAM: HipA domain protein; KEGG: fra:Francci3_2735 HipA protein YP_002321879.1 PFAM: helix-turn-helix domain protein; KEGG: fra:Francci3_2734 transcriptional regulator, XRE family YP_002321880.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: blo:BL0307 possible Rim-like protein involved in efficient processing of 16S rRNA YP_002321881.1 KEGG: blo:BL0306 narrowly conserved hypothetical protein YP_002321882.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_002321883.1 PFAM: aminotransferase, class IV; KEGG: fnu:FN1729 4-amino-4-deoxychorismate lyase YP_002321884.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: fnu:FN1730 para-aminobenzoate synthase component I / anthranilate synthase component I YP_002321885.1 KEGG: spd:SPD_0169 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein YP_002321886.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002321887.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: spd:SPD_0167 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II YP_002321888.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002321889.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: blo:BL0304 hypothetical protein YP_002321890.1 KEGG: blo:BL0303 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase YP_002321891.1 PFAM: cation efflux protein; KEGG: blo:BL0302 hypothetical protein YP_002321892.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002321893.1 PFAM: glutamine amidotransferase class-I; KEGG: blo:BL0300 possible amidotransferase YP_002321894.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0299 ATP binding protein of ABC transporter YP_002321895.1 PFAM: PilT protein domain protein; KEGG: blo:BL0298 plasmid stability protein StbB YP_002321897.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002321898.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate YP_002321899.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002321900.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002321901.1 PFAM: protein of unknown function DUF177; KEGG: blo:BL0293 conserved hypothetical protein with duf177 YP_002321902.1 KEGG: blo:BL0292 hypothetical protein YP_002321903.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002321904.1 KEGG: bad:BAD_0227 hypothetical protein YP_002321905.1 PFAM: aldo/keto reductase; KEGG: blo:BL0290 possible reductase YP_002321906.1 PFAM: regulatory protein, MerR; KEGG: blo:BL0289 MerR-type transcriptional regulator YP_002321907.1 KEGG: blo:BL0288 hypothetical transmembrane protein with unknown function YP_002321908.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_002321910.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_002321911.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_002321912.1 PFAM: Methicillin resistance protein; KEGG: blo:BL0284 FemAB-like protein possibly involved in interpeptide bridge formation in peptidoglycan YP_002321913.1 PFAM: Methicillin resistance protein; KEGG: blo:BL0283 FemAB-like protein possibly involved in interpeptide bridge formation in peptidoglycan YP_002321914.1 PFAM: Methicillin resistance protein; KEGG: blo:BL0282 FemAB-like protein possibly involved in interpeptide bridge formation in peptidoglycan YP_002321915.1 PFAM: Auxin Efflux Carrier; KEGG: blo:BL0281 hypothetical protein YP_002321916.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_002321917.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cyb:CYB_0268 NitT/TauT family ABC transporter, ATP-binding protein YP_002321918.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cyb:CYB_0267 NitT/TauT family ABC transporter, permease protein YP_002321919.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002321920.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: blo:BL0277 probable signal peptidase I YP_002321921.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002321922.1 PFAM: regulatory protein, LacI; KEGG: blo:BL0275 LacI-type transcriptional regulator YP_002321923.1 PFAM: major facilitator superfamily MFS_1; KEGG: lca:LSEI_2749 permease of the major facilitator superfamily YP_002321924.1 PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: tma:TM0306 alpha-L-fucosidase YP_002321925.1 PFAM: AMP-dependent synthetase and ligase; KEGG: blo:BL0266 probable long-chain-fatty acid CoA ligase YP_002321926.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cac:CAC1339 possible sugar-proton symporter YP_002321927.1 KEGG: ppr:PBPRA2346 UhpB, Signal transduction histidine kinase, glucose-6-phosphate specific YP_002321928.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bad:BAD_0055 response regulator of two-component system YP_002321929.1 KEGG: bld:BLi04308 hypothetical protein YP_002321930.1 KEGG: bld:BLi04305 hypothetical protein YP_002321931.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: bld:BLi04307 hypothetical protein YP_002321933.1 KEGG: blo:BL0259 beta-galactosidase I YP_002321934.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: blo:BL0258 LacI-type transcriptional regulator YP_002321935.1 PFAM: Ig domain protein; KEGG: blo:BL0257 possible arabinogalactan endo-beta-galactosidase or galactanase YP_002321936.1 KEGG: blo:BL0256 hypothetical protein YP_002321937.1 PFAM: aldo/keto reductase; KEGG: blo:BL0255 dehydrogenase or reductase protein YP_002321938.1 KEGG: blo:BL0254 narrowly conserved hypothetical protein YP_002321939.1 PFAM: natural resistance-associated macrophage protein; KEGG: blo:BL0252 H(+)-stimulated manganese uptake system protein YP_002321940.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: blo:BL0251 widely conserved hypothetical transport protein YP_002321941.1 KEGG: blo:BL0662 hypothetical protein YP_002321942.1 PFAM: DNA primase, small subunit; KEGG: cjj:CJJ81176_pTet0001 RepA YP_002321943.1 KEGG: btk:BT9727_1600 conserved hypothetical protein, possible permease YP_002321944.1 PFAM: Integrase, catalytic region; KEGG: hha:Hhal_1276 integrase, catalytic region YP_002321948.1 KEGG: art:Arth_4434 hypothetical protein YP_002321949.1 KEGG: blo:BL0837 hypothetical protein YP_002321952.1 PFAM: phage integrase family protein; KEGG: mav:MAV_1484 integrase YP_002321953.1 PFAM: glycoside hydrolase, family 20; KEGG: blo:BL0056 possible beta-hexosaminidase A YP_002321954.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL0055 sugar permease of ABC transporter system YP_002321955.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: aau:AAur_4172 two-component system response regulator YP_002321956.1 PFAM: histidine kinase, dimerisation and phosphoacceptor region; KEGG: tfu:Tfu_1846 similar to signal transduction histidine kinase YP_002321959.1 PFAM: protein of unknown function DUF214; KEGG: sma:SAV6498 membrane protein YP_002321960.1 PFAM: SMC domain protein; ABC transporter; SMART: AAA ATPase; KEGG: sma:SAV5430 ABC transporter ATP-binding protein YP_002321961.1 KEGG: tcr:511557.10 oligopeptidase B YP_002321962.1 PFAM: Lanthionine synthetase C family protein; SMART: serine/threonine protein kinase; KEGG: sma:SAV7503 membrane translocator YP_002321963.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: aau:AAur_4172 two-component system response regulator YP_002321964.1 PFAM: histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO4124 two-component sensor kinase YP_002321965.1 KEGG: sma:SAV6498 membrane protein YP_002321966.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO3755 ABC transport system ATP binding protein YP_002321967.1 PFAM: ABC transporter, transmembrane region; SMC domain protein; ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO3235 ABC transporter YP_002321968.1 KEGG: fra:Francci3_2984 hypothetical protein YP_002321970.1 PFAM: asparagine synthase; KEGG: sma:SAV259 asparagine synthetase YP_002321972.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO6360 ABC transporter ATP-binding protein YP_002321973.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: aau:AAur_4172 two-component system response regulator YP_002321974.1 PFAM: histidine kinase, dimerisation and phosphoacceptor region; KEGG: art:Arth_4135 signal transduction histidine kinase YP_002321975.1 KEGG: lxx:Lxx07690 conjugal plasmid transfer, ATPase YP_002321976.1 PFAM: protein of unknown function DUF95, transmembrane; KEGG: btl:BALH_4543 hypothetical protein YP_002321978.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sma:SAV7073 ABC transporter ATP-binding protein YP_002321981.1 PFAM: phage integrase family protein; KEGG: mva:Mvan_2508 phage integrase family protein YP_002321983.1 PFAM: aminotransferase, class I and II; KEGG: sth:STH1030 aspartate aminotransferase YP_002321985.1 KEGG: rha:RHA1_ro08658 possible dehydrogenase YP_002321986.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: lsa:LSA1516 flavodoxin YP_002321987.1 PFAM: major facilitator superfamily MFS_1; KEGG: bcz:BCZK2393 permease; possible macrolide-efflux protein YP_002321988.1 PFAM: phosphoribosylglycinamide synthetase; KEGG: fra:Francci3_1498 biotin carboxylase-like YP_002321989.1 KEGG: bld:BLi00227 hypothetical protein YP_002321990.1 PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: bad:BAD_1279 IS3 family transposase YP_002321991.1 PFAM: phage integrase family protein; KEGG: mav:MAV_1484 integrase YP_002321992.1 KEGG: bad:BAD_0216 hypothetical protein YP_002321993.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: bad:BAD_0047 response regulator of two-component system YP_002321994.1 KEGG: blo:BL1427 hypothetical protein YP_002321996.1 KEGG: sag:SAG1289 Tn5252, Orf23 YP_002321999.1 PFAM: regulatory protein, TetR; KEGG: mva:Mvan_0989 transcriptional regulator, TetR family YP_002322000.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: tfu:Tfu_1940 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal YP_002322001.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sco:SCO5862 two-component regulator CutR YP_002322003.1 KEGG: lxx:Lxx18790 hypothetical protein YP_002322004.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: bad:BAD_0485 hypothetical protein YP_002322005.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: bad:BAD_0486 ABC transporter YP_002322006.1 KEGG: lxx:Lxx18830 hypothetical protein YP_002322007.1 PFAM: regulatory protein, LacI; KEGG: blo:BL1774 LacI-type transcriptional regulator YP_002322008.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: bcz:BCZK2403 ABC transporter, ATP-binding protein YP_002322012.1 PFAM: Lanthionine synthetase C family protein; KEGG: bcl:ABC3558 lantibiotic biosynthesis protein YP_002322013.1 KEGG: tma:TM1327 ABC-2 type transport system ATP-binding protein; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter; SMART: AAA ATPase YP_002322014.1 PFAM: ABC-2 type transporter; KEGG: tma:TM1326 ABC-2 type transport system permease protein YP_002322015.1 TIGRFAM: LPXTG-motif cell wall anchor domain; KEGG: blo:BL1489 hypothetical protein with limited similarity to PrgB aggregation substance YP_002322017.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: cdi:DIP0183 transcriptional regulator YP_002322021.1 KEGG: bad:BAD_1273 hypothetical protein YP_002322022.1 PFAM: transcription factor WhiB; KEGG: blo:BL1493 possible WhiB-like transcription factor YP_002322023.1 KEGG: bad:BAD_1253 hypothetical protein YP_002322028.1 KEGG: blo:BL1670 tRNA (guanine-N7-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase YP_002322029.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; KEGG: blo:BL1671 UDP-glucose 4-epimerase YP_002322030.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: blo:BL1672 possible cyclopropane-fatty-acyl-phospholipid synthase YP_002322031.1 TIGRFAM: lactaldehyde reductase; PFAM: iron-containing alcohol dehydrogenase; KEGG: blo:BL1673 possible lactaldehyde reductase YP_002322032.1 PFAM: glycosyl transferase, family 2; KEGG: blo:BL1674 probable glycosyltransferase YP_002322033.1 PFAM: protein of unknown function UPF0118; KEGG: blo:BL1675 hypothetical integral membrane protein in upfo118 YP_002322034.1 PFAM: glycosyl transferase, family 2; KEGG: blo:BL1676 narrowly conserved hypothetical transmembrane protein YP_002322035.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL1677 ATP-binding protein of ABC transporter system YP_002322036.1 KEGG: blo:BL1678 hypothetical transmembrane protein with unknown function YP_002322037.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: blo:BL1679 hypothetical secreted protein with D-Ala-D-Ala carboxypeptidase 3 (S13) domain YP_002322038.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: blo:BL1680 narrowly conserved hypothetical protein similar to MesJ YP_002322039.1 KEGG: blo:BL1681 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_002322040.1 KEGG: blo:BL1682 ATP-dependent zinc metallopeptidase involved in cell division; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_002322041.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_002322042.1 KEGG: blo:BL1684 dihydropteroate synthase 1; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS YP_002322043.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; dihydroneopterin aldolase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: blo:BL1685 probable bifunctional folate synthesis protein [includes: dihydroneopterin aldolase (DhnA); 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_002322044.1 KEGG: blo:BL1686 hypothetical membrane protein with unknown function YP_002322045.1 PFAM: acyl-CoA thioesterase; KEGG: blo:BL1687 acyl-CoA thioesterase II YP_002322046.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_002322048.1 PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro02968 hypothetical protein YP_002322049.1 KEGG: blo:BL0809 hypothetical protein YP_002322050.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cef:CE0932 ABC transporter ATP-binding protein YP_002322051.1 PFAM: protein of unknown function DUF214; KEGG: pac:PPA0209 permease YP_002322052.1 PFAM: transcriptional regulator PadR family protein; KEGG: art:Arth_0680 transcriptional regulator, PadR-like family YP_002322053.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cef:CE1291 insertion element conserved hypothetical protein YP_002322054.1 PFAM: major facilitator superfamily MFS_1; KEGG: pac:PPA1726 permease of the major facilitator superfamily YP_002322055.1 TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; KEGG: blo:BL1691 glucokinase YP_002322056.1 PFAM: aldo/keto reductase; KEGG: zmo:ZMO1344 2,5-diketo-D-gluconate reductase YP_002322057.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002322058.1 KEGG: blo:BL1701 hypothetical protein YP_002322059.1 KEGG: blo:BL1702 hypothetical membrane protein possibly involved in transport YP_002322060.1 KEGG: blo:BL1703 hypothetical membrane protein in major facilitator transporter family YP_002322061.1 PFAM: carbohydrate kinase, FGGY; KEGG: blo:BL1709 xylulose kinase YP_002322062.1 PFAM: ROK family protein; KEGG: blo:BL1710 possible XylR-type repressor YP_002322063.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_002322064.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002322065.1 TIGRFAM: modification methylase, HemK family; PFAM: conserved hypothetical protein 95; methyltransferase small; KEGG: blo:BL1713 possible methylase protein YP_002322066.1 PFAM: Extracellular ligand-binding receptor; KEGG: blo:BL1714 solute binding protein of ABC transporter for branched-chain amino acids YP_002322067.1 PFAM: inner-membrane translocator; KEGG: blo:BL1715 permease of ABC transporter for branched-chain amino acids YP_002322068.1 PFAM: inner-membrane translocator; KEGG: blo:BL1716 permease of ABC transporter for branched-chain amino acids YP_002322069.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL1717 ATP binding protein of ABC transporter for branched-chain amino acids YP_002322070.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL1718 ATP binding protein of ABC transporter for branched-chain amino acids YP_002322071.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: blo:BL1720 conserved protein in the SUA5/YciO/YrdC family YP_002322072.1 PFAM: glycosyl transferase, family 4; KEGG: blo:BL1721 possible undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase YP_002322073.1 KEGG: blo:BL1722 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_002322074.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_002322075.1 SMART: AAA ATPase; KEGG: blo:BL1724 possible helicase YP_002322077.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002322078.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: blo:BL1729 hypothetical protein with similarity to ssb YP_002322079.1 PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: blo:BL1730 belongs to peptidase family M13 YP_002322080.1 KEGG: blo:BL1731 hypothetical protein YP_002322081.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: blo:BL1732 methionine aminopeptidase YP_002322082.1 KEGG: blo:BL1733 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_002322083.1 KEGG: blo:BL1734 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase YP_002322084.1 KEGG: blo:BL1735 hypothetical protein YP_002322085.1 PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SNF2 helicase associated domain protein,; SMART: DEAD-like helicases-like; KEGG: blo:BL1736 possible helicase YP_002322086.1 KEGG: blo:BL1802 hypothetical protein YP_002322087.1 KEGG: blo:BL1738 hypothetical protein with probable acetyltransferase domain YP_002322088.1 PFAM: DNA mismatch endonuclease vsr; KEGG: blo:BL1739 possible XorII very-short-patch-repair endonuclease YP_002322089.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase, NAD-binding; KEGG: blo:BL1740 probable oxidoreductase YP_002322090.1 PFAM: aminotransferase, class V; aminotransferase, class I and II; KEGG: blo:BL1741 probable aspartate aminotransferase YP_002322091.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: blo:BL1743 hypothetical transmembrane protein with unknown function YP_002322092.1 PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: gvi:gll3405 hypothetical protein YP_002322093.1 PFAM: AMP-dependent synthetase and ligase; KEGG: blo:BL1748 probable long-chain-fatty-acid--CoA ligase; long-chain acyl-CoA synthetase YP_002322094.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: blo:BL1749 possible NAD(P)H oxidoreductase YP_002322095.1 KEGG: dsy:DSY2901 hypothetical protein YP_002322096.1 PFAM: Exonuclease VII, small subunit; KEGG: blo:BL1750 exonuclease VII, small subunit YP_002322097.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002322098.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002322099.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: blo:BL1753 anaerobic ribonucleoside-triphosphate reductase activating protein YP_002322100.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: blo:BL1754 long hypothetical protein YP_002322101.1 PFAM: Resolvase, N-terminal domain; KEGG: fra:Francci3_2683 resolvase-like YP_002322102.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: fra:Francci3_3430 transposase, IS891/IS1136/IS1341 YP_002322103.1 PFAM: glutamate--cysteine ligase, GCS2; KEGG: blo:BL1755 possible glutamate--cysteine ligase YP_002322104.1 PFAM: DNA polymerase, beta domain protein region; KEGG: blo:BL1759 hypothetical protein with possible nucleotidyltransferase domain YP_002322105.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein, HI0074; KEGG: blo:BL1760 hypothetical protein possibly involved in exopolysaccharide production YP_002322106.1 KEGG: blo:BL1761 probable beta-1,3-exoglucanase YP_002322107.1 PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: bad:BAD_1279 IS3 family transposase YP_002322108.1 KEGG: blo:BL1762 hypothetical protein YP_002322109.1 PFAM: regulatory protein, TetR; KEGG: bad:BAD_1195 possible TetR-type transcriptional regulator YP_002322110.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: bad:BAD_1194 beta-glucosidase YP_002322111.1 KEGG: bad:BAD_0393 nucleoside-diphosphate-sugar epimerase and GAF domain YP_002322112.1 KEGG: bad:BAD_0394 predicted membrane protein YP_002322113.1 KEGG: bad:BAD_0395 predicted membrane protein YP_002322114.1 PFAM: glycosyl transferase, group 1; KEGG: bad:BAD_0396 glycosyltransferase I YP_002322115.1 KEGG: bad:BAD_0397 hypothetical protein YP_002322116.1 PFAM: membrane lipoprotein lipid attachment site; KEGG: bad:BAD_0398 spore coat protein H YP_002322117.1 KEGG: bad:BAD_0399 hypothetical protein YP_002322118.1 KEGG: cpf:CPF_1142 hypothetical protein YP_002322119.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: aeh:Mlg_1560 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) YP_002322120.1 PFAM: ABC transporter, transmembrane region; ABC transporter; SMART: AAA ATPase; KEGG: blo:BL1766 ATP-binding protein of ABC transporter YP_002322121.1 PFAM: ABC transporter, transmembrane region; ABC transporter; SMART: AAA ATPase; KEGG: blo:BL1767 ABC transporter, ATP-binding transmembrane protein YP_002322122.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: blo:BL1768 probable LacI-type transcriptional regulator YP_002322123.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: aau:AAur_3646 inosine-uridine preferring nucleoside hydrolase (IunH) YP_002322124.1 PFAM: major facilitator superfamily MFS_1; KEGG: lla:L80679 multidrug transporter YP_002322125.1 PFAM: PfkB domain protein; KEGG: bad:BAD_1485 sugar kinase in PfkB family YP_002322126.1 PFAM: regulatory protein, LacI; KEGG: blo:BL1774 LacI-type transcriptional regulator YP_002322127.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: cdi:DIP0517 GntR family regulatory protein YP_002322128.1 KEGG: cdi:DIP0331 hypothetical protein YP_002322129.1 PFAM: ROK family protein; KEGG: art:Arth_0183 ROK family protein YP_002322130.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_002322131.1 PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: pac:PPA0685 sialidase A precursor YP_002322132.1 PFAM: extracellular solute-binding protein, family 5; KEGG: hso:HS_1271 ABC transporter, periplasmic binding protein YP_002322133.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cgb:cg2938 ABC-type dipeptide/oligopeptide/nickel transport system, permease component YP_002322134.1 KEGG: cgb:cg2939 ABC-type dipeptide/oligopeptide/nickel transport system, fused permease and ATPase components; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: binding-protein-dependent transport systems inner membrane component; ABC transporter; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_002322135.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: art:Arth_0185 ABC transporter YP_002322136.1 PFAM: dihydrodipicolinate synthetase; KEGG: pac:PPA1998 dihydrodipicolinate synthase YP_002322137.1 PFAM: aminotransferase, class I and II; KEGG: blo:BL1776 probable aminotransferase YP_002322138.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_002322139.1 KEGG: rru:Rru_A0499 binding-protein-dependent transport systems inner membrane component YP_002322140.1 KEGG: bxe:Bxe_A4199 ABC spermidine/putrescine transporter, inner membrane subunit YP_002322141.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: msm:MSMEG_6521 sulfate/thiosulfate import ATP-binding protein CysA 2 YP_002322142.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: cgb:cg2693 hypothetical protein YP_002322143.1 KEGG: bja:bll2163 transposase YP_002322144.1 KEGG: bad:BAD_1279 IS3 family transposase YP_002322145.1 KEGG: bad:BAD_1018 IS150 transposase YP_002322146.1 KEGG: lla:L0023 Na-galactoside symporter YP_002322147.1 KEGG: bad:BAD_0494 hypothetical protein YP_002322148.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pac:PPA2330 transcriptional regulator, LacI family YP_002322149.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pac:PPA2330 transcriptional regulator, LacI family YP_002322150.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: shikimate kinase; 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: blo:BL0444 6-phosphogluconate dehydrogenase, decarboxylating II YP_002322151.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: sco:SCO7629 probable starvation sensing protein YP_002322152.1 PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: cef:CE2378 D-mannonate oxidoreductase YP_002322153.1 PFAM: Glucuronate isomerase; KEGG: pac:PPA2329 uronate isomerase YP_002322154.1 KEGG: hypothetical protein YP_002322155.1 PFAM: transposase IS3/IS911 family protein; KEGG: bad:BAD_1600 transposase YP_002322156.1 PFAM: Integrase, catalytic region; KEGG: bad:BAD_1369 ISSdy1_ transposase OrfB YP_002322157.1 KEGG: bad:BAD_1375 transposase YP_002322158.1 PFAM: IstB domain protein ATP-binding protein; KEGG: bad:BAD_0879 insertion element conserved hypothetical protein YP_002322159.1 KEGG: blo:BL1230 hypothetical protein YP_002322160.1 KEGG: bad:BAD_1356 hypothetical protein YP_002322161.1 PFAM: histone family protein DNA-binding protein; KEGG: blo:BL1798 DNA-binding protein Hu YP_002322162.1 KEGG: blo:BL1799 narrowly conserved hypothetical membrane protein YP_002322163.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002322164.1 KEGG: blo:BL1802 hypothetical protein YP_002322165.1 KEGG: blo:BL1804 hypothetical protein YP_002322166.1 KEGG: blo:BL1805 hypothetical protein YP_002322167.1 KEGG: bad:BAD_0557 cell surface elastin binding protein EbpS YP_002322168.1 PFAM: von Willebrand factor, type A; KEGG: blo:BL1807 hypothetical protein YP_002322169.1 KEGG: blo:BL1808 hypothetical protein YP_002322170.1 KEGG: blo:BL1809 hypothetical protein YP_002322171.1 PFAM: protein of unknown function DUF58; KEGG: blo:BL1810 hypothetical protein YP_002322172.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: blo:BL1811 widely conserved MoxR-like protein in magnesium chelatase family YP_002322173.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_002322174.1 KEGG: blo:BL1813 hypothetical protein YP_002322175.1 PFAM: Cold-shock protein, DNA-binding; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein; KEGG: blo:BL0001 cold shock protein YP_002322176.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002322177.1 PFAM: protein of unknown function DUF909; KEGG: blo:BL0003 hypothetical protein YP_002322178.1 KEGG: blo:BL0004 hypothetical protein YP_002322179.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: blo:BL0005 response regulator of two-component system YP_002322180.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: blo:BL0006 histidine kinase sensor of two-component system YP_002322181.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: blo:BL0007 cold shock protein YP_002322182.1 KEGG: blo:BL0008 narrowly conserved hypothetical protein YP_002322183.1 PFAM: UspA domain protein; KEGG: blo:BL0009 hypothetical protein YP_002322184.1 PFAM: UvrB/UvrC protein; AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: blo:BL0010 protease YP_002322185.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: blo:BL0015 5'-nucleotidase family protein YP_002322186.1 PFAM: protein of unknown function DUF349; KEGG: blo:BL0016 narrowly conserved hypothetical protein YP_002322187.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002322188.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002322189.1 KEGG: blo:BL0019 narrowly conserved hypothetical protein YP_002322191.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0021 ATP-binding protein of ABC transporter for glutamate YP_002322192.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: blo:BL0022 glutamate-binding protein of ABC transporter system YP_002322193.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL0023 permease protein of ABC transporter for glutamate YP_002322194.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL0024 permease protein of ABC transporter for glutamate YP_002322195.1 KEGG: blo:BL0025 hypothetical secreted protein with probable acid phosphatase domain YP_002322196.1 PFAM: protein of unknown function DUF344; KEGG: blo:BL0027 narrowly conserved hypothetical protein YP_002322197.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: blo:BL0028 probable DEAD box-like helicase YP_002322198.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: blo:BL0029 widely conserved hypothetical protein with possible helicase and ATP binding domains YP_002322199.1 PFAM: major facilitator superfamily MFS_1; KEGG: blo:BL0037 probable efflux-type transporter YP_002322200.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: blo:BL0038 conserved protein with hydroxyacid dehydrogenase catalytic domain YP_002322201.1 PFAM: TM2 domain containing protein+B7201; KEGG: blo:BL0040 narrowly conserved hypothetical protein YP_002322202.1 KEGG: blo:BL0041 hypothetical protein YP_002322203.1 PFAM: protein of unknown function UPF0044; KEGG: blo:BL0042 RNA-binding protein containing KH domain YP_002322204.1 PFAM: cobalt transport protein; ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0043 possible fused ATP binding protein and permease of ABC transporter YP_002322205.1 KEGG: blo:BL0044 narrowly conserved hypothetical protein YP_002322206.1 PFAM: glycosyl transferase, family 2; KEGG: blo:BL0045 probable glycosyltransferase YP_002322207.1 PFAM: ROK family protein; KEGG: blo:BL0047 polyphosphate glucokinase YP_002322208.1 PFAM: aminotransferase, class I and II; KEGG: blo:BL0048 probable aminotransferase YP_002322209.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0049 ATP binding protein of ABC transporter YP_002322210.1 KEGG: blo:BL0050 hypothetical protein YP_002322211.1 KEGG: blo:BL0051 hypothetical protein YP_002322212.1 KEGG: blo:BL0052 DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: NAD-dependent DNA ligase-like YP_002322213.1 PFAM: protein of unknown function DUF59; KEGG: blo:BL0053 hypothetical protein with duf059 and 4Fe-4S iron sulfur cluster binding domain YP_002322214.1 PFAM: glycoside hydrolase, family 20; KEGG: blo:BL0056 possible beta-hexosaminidase A YP_002322215.1 PFAM: conserved hypothetical protein 245; KEGG: blo:BL0063 hypothetical transmembrane protein with unknown function YP_002322216.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0064 ATP binding protein of ABC transporter YP_002322217.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002322218.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: blo:BL0066 NusB antitermination protein YP_002322219.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002322220.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: blo:BL0068 carbamoyl-phosphate synthase large chain YP_002322221.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: blo:BL0069 similar to orotidine 5'-phosphate decarboxylase YP_002322222.1 Essential for recycling GMP and indirectly, cGMP YP_002322223.1 KEGG: blo:BL0071 possible exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_002322224.1 TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor G, domain IV; KEGG: blo:BL0072 hypothetical protein YP_002322225.1 PFAM: phospholipase/Carboxylesterase; KEGG: blo:BL0073 possible phospholipase/carboxylesterase YP_002322226.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL0074 permease protein of ABC transporter system YP_002322227.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL0075 permease of ABC transporter system for amino acids YP_002322228.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0076 ATP binding protein of ABC transporter for glutamate/aspartate YP_002322229.1 PFAM: extracellular solute-binding protein, family 3; KEGG: blo:BL0077 probable solute-binding protein for glutamate/aspartate ABC transporter system YP_002322230.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: blo:BL0078 cystathionine beta-lyase YP_002322231.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: blo:BL0079 hypothetical protein with homology to glutaredoxin-like protein YP_002322232.1 KEGG: oih:OB3221 hypothetical protein YP_002322233.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: zmo:ZMO0311 pyrroline-5-carboxylate reductase YP_002322234.1 KEGG: reu:Reut_B5441 uroporphyrinogen decarboxylase (URO-D) YP_002322235.1 PFAM: Extracellular ligand-binding receptor; KEGG: sth:STH2361 branched chain amino acid ABC transporter substrate-binding protein YP_002322236.1 PFAM: inner-membrane translocator; KEGG: bxe:Bxe_C0096 ABC branched chain amino acid family transporter, fused inner membrane subunits YP_002322237.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: bbr:BB4294 branched-chain amino acid transport ATP-binding protein YP_002322238.1 KEGG: btl:BALH_3303 N-acyl-L-amino acid amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002322239.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: chy:CHY_1904 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_002322240.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: blo:BL0079 hypothetical protein with homology to glutaredoxin-like protein YP_002322241.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: bsu:BG11891 polar amino acid transport system ATP-binding protein YP_002322242.1 PFAM: extracellular solute-binding protein, family 3; KEGG: art:Arth_2345 extracellular solute-binding protein, family 3 YP_002322243.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC3326 amino acid ABC-type transporter, permease component YP_002322244.1 PFAM: band 7 protein; KEGG: blo:BL0084 narrowly conserved hypothetical protein YP_002322245.1 PFAM: Integrase, catalytic region; KEGG: sar:SAR2705 transposase YP_002322246.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: bld:BLi04032 hypothetical protein YP_002322248.1 PFAM: Patatin; KEGG: blo:BL0085 hypothetical protein YP_002322249.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002322250.1 PFAM: diaminopimelate epimerase; KEGG: blo:BL0087 diaminopimelate epimerase YP_002322251.1 PFAM: Vitamin K epoxide reductase; KEGG: blo:BL0088 narrowly conserved hypothetical transmembrane protein YP_002322252.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: blo:BL0089 conserved hypothetical protein with phosphoesterase domain YP_002322253.1 KEGG: aau:AAur_2759 hypothetical protein YP_002322254.1 KEGG: blo:BL0091 hypothetical protein YP_002322255.1 PFAM: UvrD/REP helicase; KEGG: blo:BL0092 probable DNA helicase II YP_002322256.1 KEGG: blo:BL0093 narrowly conserved hypothetical protein YP_002322257.1 PFAM: peptidase S16, lon domain protein; KEGG: blo:BL0094 hypothetical protein YP_002322258.1 KEGG: blo:BL0095 narrowly conserved hypothetical protein YP_002322259.1 KEGG: blo:BL0096 hypothetical protein YP_002322260.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002322261.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002322262.1 KEGG: blo:BL0099 hypothetical protein with possible acylase domain YP_002322263.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_002322264.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_002322265.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: blo:BL0102 possible inosine-uridine preferring nucleoside hydrolase YP_002322266.1 PFAM: membrane lipoprotein lipid attachment site; KEGG: blo:BL0103 possible solute binding protein of ABC transporter YP_002322267.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL0104 possible permease protein of ABC transporter system YP_002322268.1 PFAM: glycosyl hydrolase family 32, N terminal domain protein; glycosyl hydrolase family 32, C-terminal domain protein; SMART: glycoside hydrolase, family 32; KEGG: blo:BL0105 beta-fructofuranosidase (sucrase/invertase); possible inulinase YP_002322269.1 lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments YP_002322270.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: blo:BL0107 probable LacI-type transcriptional regulator YP_002322271.1 PFAM: proteinase inhibitor I4, serpin; KEGG: blo:BL0108 hypothetical protein with similarity to serine protease inhibitors YP_002322272.1 KEGG: blo:BL0109 hypothetical protein YP_002322274.1 PFAM: protein of unknown function DUF77; KEGG: blo:BL0112 conserved hypothetical protein with Duf77 YP_002322275.1 KEGG: blo:BL0113 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_002322276.1 KEGG: ape:APE_2474.1 cell division control protein 48, AAA family; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_002322277.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_002322278.1 PFAM: hydroxyethylthiazole kinase; KEGG: blo:BL0115 hydroxyethylthiazole kinase YP_002322279.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002322280.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: blo:BL0117 possible NifR3-like protein YP_002322281.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002322282.1 PFAM: protein of unknown function DUF552; KEGG: blo:BL0119 hypothetical protein YP_002322283.1 KEGG: blo:BL0120 narrowly conserved hypothetical protein YP_002322284.1 KEGG: blo:BL0121 hypothetical protein YP_002322285.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002322286.1 KEGG: blo:BL0123 pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase YP_002322287.1 PFAM: ribonuclease BN; KEGG: blo:BL0125 narrowly conserved hypothetical membrane protein YP_002322288.1 KEGG: blo:BL1735 hypothetical protein YP_002322289.1 KEGG: bad:BAD_1130 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein YP_002322290.1 KEGG: ooe:OEOE_0308 ATP-dependent nuclease, subunit B YP_002322291.1 PFAM: UvrD/REP helicase; KEGG: lme:LEUM_1481 ATP-dependent exoDNAse (exonuclease V) beta subunit YP_002322292.1 KEGG: blo:BL0118 cell division protein FtsZ YP_002322295.1 PFAM: protein of unknown function DUF262; KEGG: swo:Swol_2207 hypothetical protein YP_002322296.1 PFAM: protein of unknown function DUF262; KEGG: swo:Swol_2208 hypothetical protein YP_002322297.1 KEGG: blo:BL0204 hypothetical protein YP_002322298.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_002322299.1 KEGG: blo:BL0128 narrowly conserved hypothetical protein YP_002322300.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_002322301.1 PFAM: aldo/keto reductase; KEGG: blo:BL1292 morphine 6-dehydrogenase YP_002322302.1 PFAM: carbohydrate kinase, FGGY; KEGG: blo:BL1293 similar to xylulose kinase YP_002322303.1 catalyzes the hydrolysis of acylphosphate YP_002322304.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002322305.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002322306.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_002322307.1 KEGG: bad:BAD_1126 hypothetical protein YP_002322308.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_002322309.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis YP_002322310.1 KEGG: blo:BL1302 glutamine synthetase 2; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp YP_002322311.1 PFAM: major facilitator superfamily MFS_1; KEGG: ooe:OEOE_0075 arabinose efflux permease YP_002322312.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5476 oligopeptide transport integral membrane protein YP_002322313.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5478 oligopeptide transport system integral membrane protein YP_002322314.1 PFAM: extracellular solute-binding protein, family 5; KEGG: sma:SAV3090 ABC transporter solute-binding protein YP_002322315.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: art:Arth_2823 ABC transporter YP_002322316.1 KEGG: bad:BAD_1122 hypothetical protein YP_002322317.1 KEGG: blo:BL1305 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like YP_002322318.1 PFAM: methyltransferase small; KEGG: blo:BL1306 conserved hypothetical protein possibly in upfoo20 YP_002322319.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Miro domain protein; KEGG: blo:BL1307 GTP-binding protein YP_002322320.1 TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: blo:BL1308 lactate dehydrogenase YP_002322321.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: blo:BL1309 probable cation efflux protein YP_002322322.1 Represses a number of genes involved in the response to DNA damage YP_002322323.1 PFAM: Peptidoglycan-binding LysM; KEGG: blo:BL1311 hypothetical protein with LysM domain of membrane-bound lytic murein transglycosylase YP_002322324.1 PFAM: ATP-cone domain protein; KEGG: blo:BL1312 hypothetical protein with high similarity to regulatory protein NrdR YP_002322325.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_002322326.1 KEGG: blo:BL1314 narrowly conserved hypothetical protein with helicase motifs YP_002322327.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: blo:BL1315 MraZ protein YP_002322328.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: blo:BL1316 S-adenosyl-methyltransferase YP_002322329.1 KEGG: bad:BAD_1108 hypothetical protein YP_002322330.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: blo:BL1317 peptidoglycan synthetase; penicillin-binding protein 3 precursor YP_002322331.1 KEGG: blo:BL1318 hypothetical protein possibly involved in cell wall formation YP_002322332.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: blo:BL1319 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase YP_002322333.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002322334.1 TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: blo:BL1321 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_002322335.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: blo:BL1322 probable FtsW-like protein YP_002322336.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002322337.1 TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: blo:BL1324 UDP-N-acetylmuramate--alanine ligase YP_002322338.1 PFAM: Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: bad:BAD_1099 cell division protein YP_002322339.1 KEGG: bad:BAD_1377 insertion element IS6110 hypothetical 12.0 kDa protein YP_002322340.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: rxy:Rxyl_1549 ABC transporter YP_002322341.1 PFAM: ABC-2 type transporter; KEGG: pac:PPA2207 ABC transporter-associated permease YP_002322342.1 KEGG: xom:XOO_4119 ISXoo15 transposase YP_002322343.1 KEGG: blo:BL1325 narrowly conserved hypothetical protein with possible DNA interaction motif YP_002322345.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_002322346.1 PFAM: glycoside hydrolase, family 38; glycosyl hydrolases 38 domain protein; KEGG: blo:BL1327 alpha-mannosidase YP_002322347.1 PFAM: glycoside hydrolase, family 38; glycosyl hydrolases 38 domain protein; KEGG: blo:BL1328 alpha-mannosidase YP_002322348.1 PFAM: extracellular solute-binding protein, family 5; KEGG: blo:BL1345 probable solute-binding protein of ABC transporter for peptides YP_002322349.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1093 probable permease of ABC transporter for peptides YP_002322350.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1092 probable permease of ABC transporter for peptides YP_002322351.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: blo:BL1348 ATP binding protein of ABC transporter YP_002322352.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: blo:BL1336 probable LacI-type transcriptional regulator YP_002322353.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: blo:BL1337 narrowly conserved hypothetical protein with possible isomerase function YP_002322354.1 PFAM: Uncharacterised conserved protein UCP028846; KEGG: blo:BL1338 narrowly conserved hypothetical protein YP_002322355.1 PFAM: PfkB domain protein; KEGG: blo:BL1339 protein in PfkB family of sugar kinases YP_002322356.1 PFAM: ROK family protein; KEGG: blo:BL1340 probable transcriptional repressor in the Rok (NagC/XylR) family YP_002322357.1 PFAM: ROK family protein; KEGG: blo:BL1341 possible sugar kinase YP_002322358.1 PFAM: ROK family protein; KEGG: blo:BL1342 NagC/XylR-type transciptional regulator YP_002322359.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_002322360.1 KEGG: blo:BL1344 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_002322361.1 PFAM: extracellular solute-binding protein, family 1; KEGG: pac:PPA0085 periplasmic protein YP_002322362.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0086 permease protein YP_002322363.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0087 permease protein YP_002322365.1 PFAM: NUDIX hydrolase; KEGG: blo:BL1349 hypothetical protein containing MutT-like domain YP_002322366.1 PFAM: peptidase M24; KEGG: blo:BL1350 Xaa-Pro aminopeptidase I YP_002322367.1 KEGG: blo:BL1351 hypothetical protein YP_002322368.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: blo:BL1353 dihydrofolate synthase / folylpolyglutamate synthase YP_002322369.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: blo:BL1354 chromosome partitioning protein Smc YP_002322370.1 KEGG: blo:BL1355 hypothetical protein with possible similarity to FemA involved in pentaglycine interpeptide bridge in peptidoglycan YP_002322371.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_002322372.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_002322373.1 KEGG: blo:BL1358 hypothetical protein YP_002322374.1 PFAM: Aldose 1-epimerase; KEGG: blo:BL1359 hypothetical protein with possible aldose-1-epimerase domain YP_002322375.1 PFAM: Aldose 1-epimerase; KEGG: blo:BL1360 hypothetical protein in aldose epimerase family YP_002322376.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_002322377.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bad:BAD_1080 hypothetical protein YP_002322378.1 KEGG: blo:BL1363 glyceraldehyde 3-phosphate dehydrogenase C; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_002322379.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: blo:BL1364 hypothetical protein YP_002322380.1 PFAM: initiation factor 3; KEGG: blo:BL1366 translation initiation factor If-3 YP_002322381.1 PFAM: ribosomal protein L35; KEGG: blo:BL1366a 50S ribosomal protein L35 YP_002322382.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002322383.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: blo:BL1368 probable integrase/recombinase YP_002322384.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: blo:BL1370 widely conserved hypothetical protein in ParA family YP_002322385.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: blo:BL1371 segregation and condensation protein A YP_002322386.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: blo:BL1372 segregation and condensation protein B YP_002322387.1 PFAM: NUDIX hydrolase; KEGG: blo:BL1373 narrowly conserved hypothetical protein possibly in the MutT/NUDIX family YP_002322388.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_002322389.1 KEGG: blo:BL1375 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002322390.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_002322391.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: blo:BL1377 possible pyridoxal-phosphate-dependent aminotransferase YP_002322392.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; GTP-binding protein, HSR1-related; elongation factor Tu, domain 2 protein; KEGG: blo:BL1379 widely conserved protein similar to those annotated as GTP-binding elongation factor TypA/BipA YP_002322393.1 PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4232 hypothetical protein YP_002322395.1 KEGG: blo:BL1380 hypothetical protein YP_002322396.1 PFAM: prephenate dehydratase; KEGG: blo:BL1381 prephenate dehydratase YP_002322397.1 PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: blo:BL1382 probable prephenate dehydrogenase YP_002322398.1 KEGG: blo:BL1383 hypothetical protein YP_002322399.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002322400.1 PFAM: extracellular solute-binding protein, family 5; KEGG: blo:BL1386 solute binding protein of ABC transporter system possibly for peptides YP_002322401.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL1387 probable permease protein of ABC-transporter for peptides YP_002322402.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL1389 probable permease protein of ABC-transporter for peptides YP_002322403.1 PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: blo:BL1390 probable ATP binding protein of ABC transporter for peptides YP_002322404.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: blo:BL1391 possible exodeoxyribonuclease YP_002322405.1 KEGG: blo:BL1392 narrowly conserved hypothetical protein YP_002322406.1 KEGG: blo:BL1393 narrowly conserved hypothetical transmembrane protein YP_002322407.1 PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: blo:BL1394 RNA methyltransferase YP_002322408.1 KEGG: blo:BL1395 hypothetical protein YP_002322409.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: blo:BL1396 probable cation-transporting ATPase YP_002322410.1 Catalyzes the conversion of citrate to isocitrate YP_002322411.1 PFAM: RelB antitoxin; KEGG: blo:BL1398 hypothetical protein with possible helix turn helix motif YP_002322412.1 PFAM: PilT protein domain protein; KEGG: blo:BL1399 hypothetical protein YP_002322413.1 PFAM: protein of unknown function DUF262; KEGG: blo:BL1400 hypothetical protein with similarity to z5950 product of Escherichia coli O157:H7 YP_002322414.1 PFAM: GCN5-related N-acetyltransferase; KEGG: blo:BL1401 hypothetical protein in acetyl transferase family YP_002322415.1 PFAM: protein of unknown function UPF0005; KEGG: blo:BL1405 conserved hypothetical protein with MutT type domain YP_002322416.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: blo:BL1406 possible integral membrane protein with duf6 YP_002322417.1 PFAM: RelA/SpoT domain protein; KEGG: blo:BL1407 narrowly conserved hypothetical protein YP_002322418.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002322419.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002322420.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: blo:BL1410 hypothetical protein with C-terminal similarity to cell (division) filamentation protein Fic YP_002322421.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: blo:BL1411 cell division protein FtsK YP_002322422.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: blo:BL1412 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_002322423.1 PFAM: CinA domain protein; KEGG: blo:BL1413 CinA-like protein YP_002322424.1 PFAM: helix-turn-helix domain protein; KEGG: blo:BL1414 possible DNA binding protein YP_002322425.1 KEGG: aau:AAur_1593 hypothetical protein YP_002322426.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002322427.1 PFAM: regulatory protein RecX; KEGG: blo:BL1416 RecX-like protein YP_002322428.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: blo:BL1418 hypothetical protein in sigma 54 modulation protein / S30ea ribosomal protein family YP_002322429.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002322430.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: sme:SMa2002 hypothetical protein YP_002322431.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002322432.1 KEGG: blo:BL1423 hypothetical transmembrane protein with unknown function YP_002322433.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: blo:BL1424 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_002322434.1 PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: blo:BL1425 probable serine-threonine protein kinase YP_002322435.1 PFAM: Polyprenyl synthetase; KEGG: blo:BL1426 bifunctional short chain isoprenyl diphosphate synthase YP_002322436.1 KEGG: blo:BL1427 hypothetical protein YP_002322437.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released YP_002322438.1 KEGG: blo:BL1429 DNA gyrase subunit B; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II YP_002322439.1 PFAM: major facilitator superfamily MFS_1; KEGG: blo:BL1430 hypothetical protein YP_002322440.1 PFAM: PfkB domain protein; KEGG: blo:BL1431 probable ribokinase YP_002322441.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; KEGG: blo:BL1432 ATP-dependent helicase II YP_002322442.1 KEGG: blo:BL1433 hypothetical protein with response regulator receiver domain YP_002322443.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002322444.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: blo:BL1435 narrowly conserved hypothetical protein YP_002322445.1 KEGG: blo:BL1436 hypothetical protein YP_002322446.1 similar to Mycobacterium tuberculosis RV2699C protein; KEGG: blo:BL1437 narrowly conserved hypothetical protein similar to Mycobacterium tuberculosis RV2699C YP_002322447.1 KEGG: blo:BL1438 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_002322448.1 KEGG: blo:BL1439 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region YP_002322449.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: blo:BL1442 possible peptidyl-prolyl cis-trans isomerase YP_002322451.1 PFAM: HipA domain protein; KEGG: dsy:DSY2901 hypothetical protein YP_002322452.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: blo:BL1462 hypothetical protein with similarity to ZK593.8 protein of C. elegans YP_002322453.1 PFAM: Integrase, catalytic region; KEGG: bad:BAD_1374 IS3 family transposase YP_002322454.1 PFAM: major facilitator superfamily MFS_1; KEGG: bad:BAD_0219 hypothetical protein YP_002322455.1 PFAM: transposase, mutator type; KEGG: bja:bll2163 transposase YP_002322457.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: xft:PD1006 cell filamentation protein YP_002322458.1 PFAM: phage integrase family protein; KEGG: mtc:MT2735 integrase YP_002322460.1 PFAM: Abi family protein; KEGG: saa:SAUSA300_0814 hypothetical protein YP_002322463.1 PFAM: major facilitator superfamily MFS_1; KEGG: ldb:Ldb1448 permease YP_002322464.1 KEGG: sag:SAG0934 Tn916, hypothetical protein YP_002322465.1 KEGG: tde:TDE2416 hypothetical protein YP_002322468.1 PFAM: Integrase, catalytic region; KEGG: mkm:Mkms_4381 integrase, catalytic region YP_002322469.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: ctc:CTC02098 transporter YP_002322470.1 KEGG: cpe:PCP08 hypothetical protein YP_002322471.1 KEGG: bad:BAD_1044 hypothetical protein YP_002322472.1 KEGG: cjk:jk1382 transposase for IS3509a YP_002322473.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: smu:SMU.654 ABC transporter, ATP-binding protein MutF YP_002322474.1 KEGG: bat:BAS3615 bacteriocin ABC transporter, permease protein subunit YP_002322475.1 KEGG: bld:BLi00314 hypothetical protein YP_002322477.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cno:NT01CX_1432 subtilin biosynthesis regulatory protein SpaR YP_002322478.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: smu:SMU.660 histidine kinase SpaK YP_002322479.1 KEGG: blo:BL1443 hypothetical protein YP_002322480.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: blo:BL1444 widely conserved hypothetical transmembrane protein with duf6 YP_002322481.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: blo:BL1445 narrowly conserved hypothetical protein YP_002322482.1 KEGG: blo:BL1446 hypothetical protein YP_002322483.1 PFAM: Phosphoglycerate mutase; KEGG: blo:BL1447 possible phosphoglycerate mutase YP_002322484.1 PFAM: Mg2+ transporter protein, CorA family protein; KEGG: blo:BL1448 possible magnesium and cobalt transport protein YP_002322485.1 PFAM: extracellular solute-binding protein, family 3; KEGG: blo:BL1449 solute binding protein of ABC transporter system YP_002322486.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002322487.1 KEGG: blo:BL1451 hypothetical protein with C-terminal helix hairpin helix domain like that in ComE; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_002322488.1 PFAM: ComEC/Rec2-related protein; KEGG: blo:BL1452 conserved hypothetical transmembrane protein related to ComA YP_002322489.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: blo:BL1454 DNA polymerase III, delta subunit YP_002322490.1 PFAM: protein of unknown function UPF0079; KEGG: bad:BAD_0860 hypothetical protein YP_002322491.1 PFAM: peptidase M22, glycoprotease; KEGG: blo:BL1455 hypothetical protein YP_002322492.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: blo:BL1456 probable ribosomal-protein-alanine N-acetyltransferase YP_002322493.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002322494.1 KEGG: blo:BL1458 probable integrase/recombinse YP_002322495.1 KEGG: blo:BL1228 hypothetical protein YP_002322497.1 KEGG: sma:SAV6246 hypothetical protein YP_002322498.1 PFAM: Integrase, catalytic region; KEGG: hha:Hhal_1276 integrase, catalytic region YP_002322499.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: cef:CE1498 transposase YP_002322501.1 KEGG: vfi:VFA0230 outer membrane protein YP_002322502.1 KEGG: bfr:BF1268 hypothetical protein YP_002322503.1 KEGG: rha:RHA1_ro08546 methyltransferase YP_002322504.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cac:CAC0661 ABC transporter ATP-binding protein (multidrug resistance protein) YP_002322505.1 KEGG: blo:BL1476 hypothetical protein YP_002322506.1 KEGG: blo:BL1459 hypothetical protein YP_002322507.1 KEGG: blo:BL1463 hypothetical protein YP_002322508.1 KEGG: blo:BL1474 narrowly conserved hypothetical protein YP_002322509.1 KEGG: pac:PPA1283 hypothetical protein YP_002322511.1 PFAM: Integrase, catalytic region; KEGG: rle:RL2453 transposase-related protein YP_002322512.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: btl:BALH_1667 ABC transporter, ATP-binding protein YP_002322514.1 KEGG: bha:BH0447 hypothetical protein YP_002322517.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: lxx:Lxx08740 two-component system, sensor protein YP_002322518.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pac:PPA2028 two-component response regulator YP_002322519.1 PFAM: peptidase M23B; KEGG: blo:BL1497 narrowly conserved hypothetical protein in M23/M37 peptidase family YP_002322520.1 KEGG: blo:BL1498 hypothetical protein YP_002322521.1 Converts isocitrate to alpha ketoglutarate YP_002322522.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_002322523.1 KEGG: bad:BAD_0778 hypothetical protein YP_002322524.1 PFAM: AMP-dependent synthetase and ligase; KEGG: blo:BL1501 possible long-chain-fatty acid CoA ligase YP_002322525.1 KEGG: blo:BL1502 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_002322526.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002322527.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002322528.1 Catalyzes the phosphorylation of UMP to UDP YP_002322529.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002322530.1 PFAM: phosphatidate cytidylyltransferase; KEGG: blo:BL1507 probable phosphatidate cytidylyltransferase YP_002322531.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_002322532.1 PFAM: ThiJ/PfpI domain protein; KEGG: blo:BL1509 hypothetical protein in the ThiJ/PfpI family YP_002322533.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002322534.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_002322535.1 KEGG: blo:BL0687 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein YP_002322536.1 KEGG: efa:EF0401 pyrrolidone-carboxylate peptidase; TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15, pyroglutamyl peptidase I YP_002322537.1 PFAM: protein of unknown function DUF979; KEGG: efa:EF0400 hypothetical protein YP_002322538.1 PFAM: protein of unknown function DUF969; KEGG: efa:EF0399 hypothetical protein YP_002322539.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0689 ATP binding protein of ABC transporter YP_002322540.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: blo:BL0690 hypothetical protein with glucose/ribitol dehydrogenase family signature YP_002322541.1 KEGG: bad:BAD_1190 hypothetical protein YP_002322542.1 KEGG: blo:BL0691 narrowly conserved protein with unknown function YP_002322543.1 KEGG: blo:BL0692 hypothetical protein YP_002322544.1 KEGG: blo:BL0695 narrowly conserved protein with unknown function YP_002322546.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cya:CYA_2048 ABC transporter, ATP-binding protein YP_002322547.1 KEGG: blo:BL0697 hypothetical protein YP_002322548.1 KEGG: blo:BL0698 hypothetical protein YP_002322549.1 KEGG: blo:BL0699 hypothetical myosin-like protein with unknown function YP_002322550.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002322551.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002322552.1 PFAM: Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: blo:BL0704 probable shikimate 5-dehydrogenase YP_002322553.1 PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: blo:BL0705 hypothetical protein YP_002322554.1 PFAM: protein of unknown function DUF199; KEGG: blo:BL0706 narrowly conserved hypothetical protein YP_002322555.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002322556.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002322557.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: blo:BL0709 protein-export membrane protein SecG YP_002322558.1 TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: blo:BL0710 L-lactate dehydrogenase YP_002322559.1 PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: blo:BL0711 conserved hypothetical protein with duf13 YP_002322560.1 in Corynebacterium glutamicum the aminotransferase can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; this protein contains a helix-turn-helix domain at the N-terminus YP_002322561.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bfs:BF1879 transmembrane Na+ driven efflux protein YP_002322562.1 PFAM: branched-chain amino acid transport system II carrier protein; KEGG: blo:BL0714 branched-chain amino acid transport system carrier protein YP_002322563.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate YP_002322564.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002322565.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_002322566.1 PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: blo:BL0719 chaperone protein YP_002322567.1 KEGG: llc:LACR_1152 hypothetical protein YP_002322568.1 PFAM: glycoside hydrolase, family 25; KEGG: efa:EF2086 endolysin YP_002322571.1 KEGG: ppe:PEPE_0059 subtilisin-like serine protease YP_002322575.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: nfa:nfa15380 phage tail YP_002322584.1 PFAM: phage major capsid protein, HK97; KEGG: lin:lin0109 hypothetical protein YP_002322586.1 KEGG: nfa:nfa15250 hypothetical protein YP_002322587.1 PFAM: protein of unknown function DUF1483; KEGG: nfa:nfa15240 hypothetical protein YP_002322588.1 KEGG: nfa:nfa15220 hypothetical protein YP_002322589.1 KEGG: nfa:nfa15210 hypothetical protein YP_002322590.1 KEGG: mva:Mvan_4358 hypothetical protein YP_002322596.1 PFAM: pancreatic ribonuclease; KEGG: mkm:Mkms_3589 conserved hypothetical protein YP_002322598.1 KEGG: SNF2-related domain-containing protein YP_002322603.1 PFAM: endodeoxyribonuclease RusA; KEGG: mag:amb1933 Holliday junction resolvase YP_002322608.1 KEGG: nfa:nfa14740 prophage antirepressor YP_002322613.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: sfu:Sfum_3845 DNA-cytosine methyltransferase YP_002322614.1 KEGG: vei:Veis_1182 hypothetical protein YP_002322617.1 PFAM: phage integrase family protein; KEGG: nfa:nfa2390 phage integrase YP_002322618.1 PFAM: fructosamine kinase; KEGG: blo:BL0720 hypothetical protein YP_002322619.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002322620.1 PFAM: protein of unknown function DUF75; KEGG: blo:BL0722 narrowly conserved hypothetical protein YP_002322621.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002322622.1 PFAM: histidine triad (HIT) protein; KEGG: blo:BL0725 conserved hypothetical protein with Hit domain YP_002322623.1 PFAM: protein of unknown function DUF28; KEGG: blo:BL0726 widely conserved hypothetical protein in upf102 YP_002322624.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_002322625.1 KEGG: blo:BL0728 probable holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA, domain I; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_002322626.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002322627.1 KEGG: blo:BL0730 preprotein translocase YajC subunit YP_002322628.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002322629.1 PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: blo:BL0732 succinyl-CoA synthetase beta chain YP_002322630.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_002322631.1 KEGG: blo:BL0734 hypothetical protein YP_002322632.1 involved in de novo purine biosynthesis YP_002322633.1 PFAM: major intrinsic protein; KEGG: blo:BL0736 probable membrane channel protein YP_002322634.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: blo:BL0737 pseudouridylate synthase YP_002322635.1 CMK catalyzes the formation of (d)CDP from ATP and (d)CMP; the function of the GTP-binding domain EngA appears to be in synchronizing cellular events by interacting with multiple cellular targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide-binding affinities in the two binding domains YP_002322636.1 KEGG: cjk:jk1382 transposase for IS3509a YP_002322637.1 PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: blo:BL0739 probable UTP-glucose-1-phosphate uridylyltransferase YP_002322638.1 KEGG: blo:BL0741 hypothetical protein YP_002322640.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; DSH domain protein; SMART: DEAD-like helicases-like; KEGG: blo:BL0742 probable helicase YP_002322641.1 KEGG: blo:BL0743 narrowly conserved hypothetical protein YP_002322642.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: blo:BL0744 probable hydrolase or phosphatase YP_002322645.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sao:SAOUHSC_01542 SNF2 family N-terminal domain protein YP_002322647.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: fra:Francci3_3266 transposase, IS891/IS1136/IS1341 YP_002322650.1 KEGG: ade:Adeh_0244 LigA YP_002322652.1 KEGG: hsa:283463 mucin 19, oligomeric YP_002322653.1 PFAM: leucine rich repeat variant; KEGG: dge:Dgeo_0869 leucine rich repeat variant YP_002322654.1 KEGG: sak:SAK_0732 hypothetical protein YP_002322663.1 PFAM: transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: tfu:Tfu_1324 transposase, IS605 OrfB YP_002322664.1 KEGG: mpn:MPN198 adenine-specific methyltransferase EcoRI YP_002322667.1 PFAM: N-formylglutamate amidohydrolase; KEGG: sco:SCO6999 hypothetical protein YP_002322668.1 KEGG: bad:BAD_1397 hypothetical protein YP_002322671.1 PFAM: CHAP domain containing protein; KEGG: blo:BL1661 hypothetical protein with C-terminal homology to TrsG of S. aureus conjugation system YP_002322675.1 KEGG: pau:PA14_23830 pilus assembly protein YP_002322677.1 KEGG: art:Arth_1061 HNH endonuclease YP_002322679.1 KEGG: bca:BCE_0376 hypothetical protein YP_002322681.1 SMART: helix-turn-helix domain protein YP_002322682.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: mxa:MXAN_1208 modification methylase YP_002322687.1 KEGG: mja:MJ1043 DNA-directed RNA polymerase subunit A'' YP_002322688.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: dsy:DSY0044 hypothetical protein YP_002322690.1 KEGG: sma:SAV2858 M protein YP_002322692.1 PFAM: Resolvase, N-terminal domain; KEGG: mbo:Mb2815c possible resolvase YP_002322693.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: fra:Francci3_3430 transposase, IS891/IS1136/IS1341 YP_002322694.1 TIGRFAM: LPXTG-motif cell wall anchor domain; KEGG: blo:BL0387 hypothetical protein YP_002322695.1 PFAM: SMF family protein; KEGG: tfu:Tfu_0715 similar to Rossmann fold nucleotide-binding protein involved in DNA uptake YP_002322698.1 KEGG: blo:BL1490 hypothetical protein YP_002322699.1 KEGG: blo:BL1490 hypothetical protein YP_002322703.1 PFAM: Exonuclease, RNase T and DNA polymerase III; KEGG: blo:BL1723 probable oligoribonuclease YP_002322704.1 PFAM: helix-turn-helix domain protein YP_002322705.1 KEGG: mmr:Mmar10_3066 AAA ATPase YP_002322706.1 KEGG: blo:BL1488 hypothetical protein YP_002322707.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cef:CE1291 insertion element conserved hypothetical protein YP_002322708.1 KEGG: mkm:Mkms_5455 DnaB domain protein helicase, C-terminal domain protein YP_002322710.1 KEGG: ade:Adeh_0726 hypothetical protein YP_002322712.1 PFAM: CHAP domain containing protein; KEGG: lme:LEUM_1033 surface antigen YP_002322714.1 KEGG: nfa:nfa7030 phage recombinase YP_002322715.1 TIGRFAM: DNA polymerase III, beta subunit; SMART: DNA polymerase III, beta chain; KEGG: bad:BAD_0002 DNA polymerase III, B subunit DnaN YP_002322720.1 KEGG: mmr:Mmar10_2417 TolA YP_002322721.1 KEGG: fal:FRAAL2865 hypothetical protein YP_002322724.1 PFAM: cell divisionFtsK/SpoIIIE YP_002322725.1 PFAM: Allergen V5/Tpx-1 family protein; KEGG: hso:HS_1058 possible large adhesin YP_002322726.1 KEGG: bad:BAD_1174 hypothetical protein YP_002322727.1 TIGRFAM: conserved repeat domain; LPXTG-motif cell wall anchor domain; PFAM: Cna B domain protein; KEGG: blo:BL1488 hypothetical protein YP_002322729.1 PFAM: Helicase superfamily 3 YP_002322731.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002322732.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: bad:BAD_0833 protein-export membrane protein SecG YP_002322735.1 PFAM: transcription factor WhiB; KEGG: ace:Acel_0560 transcription factor WhiB YP_002322746.1 PFAM: peptidase C60, sortase A and B; KEGG: blo:BL0591 hypothetical transmembrane protein with unknown function YP_002322750.1 KEGG: bad:BAD_0385 hypothetical protein YP_002322754.1 PFAM: metallophosphoesterase YP_002322764.1 KEGG: hypothetical protein YP_002322769.1 PFAM: Methicillin resistance protein; KEGG: blo:BL0282 FemAB-like protein possibly involved in interpeptide bridge formation in peptidoglycan YP_002322773.1 PFAM: transposase IS200-family protein; KEGG: ctc:CTC00621 transposase YP_002322774.1 PFAM: transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bcl:ABC2013 transposase, IS605 family YP_002322781.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: tfu:Tfu_0703 transposase, IS605 OrfB YP_002322785.1 KEGG: ser:SERP1578 hypothetical protein YP_002322790.1 KEGG: cdi:DIP1756 DNA methyltransferase YP_002322804.1 PFAM: helix-turn-helix domain protein; KEGG: mbb:BCG_2038c hypothetical protein YP_002322805.1 KEGG: bad:BAD_0940 hypothetical protein YP_002322812.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: mxa:MXAN_1208 modification methylase YP_002322814.1 PFAM: phage integrase family protein; KEGG: bad:BAD_0939 phage integrase YP_002322815.1 PFAM: phage integrase family protein; KEGG: bad:BAD_0939 phage integrase YP_002322816.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: fra:Francci3_3266 transposase, IS891/IS1136/IS1341 YP_002322819.1 PFAM: HipA domain protein; KEGG: blo:BL1476 hypothetical protein YP_002322822.1 PFAM: Integrase, catalytic region; KEGG: mpa:MAP3854 hypothetical protein YP_002322823.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: tws:TW594 ABC transporter ATP-binding protein YP_002322824.1 PFAM: protein of unknown function DUF214; KEGG: tws:TW596 membrane protein YP_002322825.1 KEGG: bad:BAD_0821 anaerobic C4-dicarboxylate transport protein YP_002322826.1 SMART: regulatory protein, MerR; KEGG: blo:BL0746 hypothetical protein with possible regulatory function YP_002322827.1 PFAM: Forkhead-associated protein; KEGG: blo:BL0747 possible signal transduction protein YP_002322828.1 PFAM: protein of unknown function DUF881; KEGG: blo:BL0748 narrowly conserved hypothetical protein YP_002322829.1 PFAM: protein of unknown function DUF1290; KEGG: blo:BL0748a hypothetical membrane protein with unknown function YP_002322830.1 PFAM: protein of unknown function DUF881; KEGG: blo:BL0749 narrowly conserved hypothetical protein YP_002322831.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: blo:BL0750 possible CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase YP_002322832.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_002322833.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_002322834.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_002322835.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002322836.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_002322837.1 catalyzes ring closure to form indole-3-glycerol phosphate; catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002322838.1 PFAM: protein of unknown function DUF159; KEGG: art:Arth_4324 protein of unknown function DUF159 YP_002322839.1 KEGG: blo:BL0757 probable endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease, family 2 YP_002322840.1 PFAM: amino acid permease-associated region; KEGG: blo:BL0758 amino acid permease YP_002322841.1 KEGG: blo:BL0759 hypothetical membrane protein with unknown function YP_002322842.1 PFAM: VanZ family protein; KEGG: blo:BL0760 hypothetical membrane protein with unknown function YP_002322843.1 KEGG: bpm:BURPS1710b_A2417 aminotransferase class-V YP_002322844.1 PFAM: GCN5-related N-acetyltransferase; KEGG: blo:BL0765 hypothetical protein with acyl transferase domain YP_002322845.1 KEGG: lin:lin0863 hypothetical protein YP_002322846.1 PFAM: GCN5-related N-acetyltransferase; KEGG: blo:BL0766 hypothetical protein with acyl transferase domain YP_002322847.1 KEGG: xom:XOO_3784 ISXoo11 transposase YP_002322848.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: sco:SCO3139 sodium:solute symporter YP_002322849.1 KEGG: sco:SCO3140 hypothetical protein YP_002322851.1 PFAM: major facilitator superfamily MFS_1; KEGG: sau:SA1341 hypothetical protein YP_002322852.1 KEGG: mmp:MMP0014 tRNA pseudouridine synthase D YP_002322853.1 KEGG: bte:BTH_II2277 transposase YP_002322855.1 PFAM: protein of unknown function DUF1526; KEGG: blo:BL0768 hypothetical protein YP_002322856.1 KEGG: blo:BL0769 hypothetical protein YP_002322857.1 KEGG: bad:BAD_1443 hypothetical protein YP_002322859.1 KEGG: rno:679314 hypothetical protein LOC679314 Pfam: Mucin PROSITE: SER_RICH THR_RICH YP_002322860.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: bxe:Bxe_A2288 ABC transporter, ATPase subunit YP_002322861.1 PFAM: protein of unknown function DUF214; KEGG: ecv:APECO1_1215 macrolide-specific ABC-type efflux carrier YP_002322862.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: atc:AGR_C_1704 damage-inducible protein J YP_002322863.1 TIGRFAM: addiction module toxin, RelE/StbE family; KEGG: rpc:RPC_1376 addiction module toxin, RelE/StbE YP_002322865.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sde:Sde_0297 sigma-24 (FecI-like) YP_002322869.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sco:SCO4148 ABC transport system ATP-binding protein YP_002322872.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: cjk:jk0128 hypothetical protein YP_002322875.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cdi:DIP0090 ABC transport system ATP-binding protein YP_002322876.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cef:CE1291 insertion element conserved hypothetical protein YP_002322877.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: aau:AAur_4172 two-component system response regulator YP_002322878.1 PFAM: histidine kinase, dimerisation and phosphoacceptor region; KEGG: sco:SCO6362 two-component sensor YP_002322879.1 PFAM: protein of unknown function DUF214; KEGG: sma:SAV6498 membrane protein YP_002322880.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sma:SAV5430 ABC transporter ATP-binding protein YP_002322882.1 KEGG: mba:Mbar_A0863 hypothetical protein YP_002322884.1 PFAM: regulatory protein, MerR YP_002322885.1 KEGG: blo:BL0771 hypothetical protein YP_002322886.1 KEGG: lme:LEUM_0017 predicted amidohydrolase YP_002322887.1 PFAM: NUDIX hydrolase; KEGG: blo:BL0774 MutT-like protein YP_002322888.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: blo:BL0775 narrowly conserved hypothetical protein YP_002322889.1 KEGG: blo:BL0777 hypothetical membrane protein with possible transport function YP_002322890.1 PFAM: amino acid permease-associated region; KEGG: blo:BL0778 histidine permease YP_002322891.1 KEGG: ath:AT5G44310 unknown protein YP_002322892.1 PFAM: protein of unknown function DUF488; KEGG: ret:RHE_PF00419 hypothetical protein YP_002322894.1 KEGG: blo:BL0781 hypothetical protein YP_002322897.1 PFAM: Death-on-curing protein; KEGG: blo:BL0782 narrowly conserved hypothetical protein YP_002322898.1 related to short-chain alcohol dehydrogenases; KEGG: fal:FRAAL3610 oxidoreductase; (related to short-chain alcohol dehydrogenases) YP_002322899.1 PFAM: protein of unknown function DUF488; KEGG: mta:Moth_1898 protein of unknown function DUF488 YP_002322900.1 KEGG: bfr:BF2943 probable helicase YP_002322901.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002322902.1 PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: blo:BL0784 hypothetical protein YP_002322903.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: blo:BL0785 possible alpha beta hydrolase YP_002322904.1 PFAM: regulatory protein, LysR; KEGG: blo:BL0786 LysR-type transcriptional regulator YP_002322905.1 KEGG: blo:BL0787 narrowly conserved hypothetical protein YP_002322906.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002322907.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: blo:BL0789 dihydroorotate dehydrogenase YP_002322908.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: blo:BL0790 probable dihydroorotate dehydrogenase electron transfer subunit YP_002322909.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: blo:BL0791 orotidine 5'-phosphate decarboxylase YP_002322910.1 PFAM: amidohydrolase; KEGG: blo:BL0792 dihydroorotase YP_002322911.1 involved in the allosteric regulation of aspartate carbamoyltransferase YP_002322912.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002322913.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_002322914.1 PFAM: Choloylglycine hydrolase; KEGG: blo:BL0796 choloylglycine hydrolase YP_002322915.1 KEGG: blo:BL0797 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_002322916.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_002322917.1 PFAM: Phosphoglycerate mutase; KEGG: blo:BL0799 narrowly conserved hypothetical protein YP_002322918.1 KEGG: blo:BL0800 protein-L-isoaspartate methyltransferase YP_002322919.1 PFAM: phospholipase/Carboxylesterase; KEGG: blo:BL0801 hypothetical protein with carboxyesterase/lipase domain YP_002322921.1 PFAM: TENA/THI-4 domain protein; KEGG: blo:BL0804 probable transcriptional activator similar to TenA YP_002322922.1 KEGG: blo:BL0805 hypothetical protein with similarity to gene 66 protein of mycobacteriophage D29 YP_002322923.1 KEGG: blo:BL0807 hypothetical protein with similarity to lipase and esterase YP_002322924.1 PFAM: zinc finger, SWIM domain protein; KEGG: dsy:DSY0916 hypothetical protein YP_002322925.1 PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: blo:BL0810 narrowly conserved hypothetical protein YP_002322926.1 PFAM: zinc finger, SWIM domain protein YP_002322927.1 KEGG: bad:BAD_0974 hypothetical protein YP_002322928.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: bha:BH3997 hypothetical protein YP_002322929.1 KEGG: pst:PSPTO_3054 oxidoreductase, short chain dehydrogenase/reductase family YP_002322930.1 PFAM: zinc finger, SWIM domain protein YP_002322931.1 KEGG: blo:BL0820 hypothetical protein YP_002322932.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: blo:BL0821 possible thioredoxin-dependent thiol peroxidase YP_002322933.1 KEGG: blo:BL0822 hypothetical protein YP_002322934.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: blo:BL0824 conserved hypothetical protein with duf3 YP_002322935.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0825 probable ATP binding protein of ABC transporter YP_002322936.1 TIGRFAM: glycogen synthase; PFAM: glycosyl transferase, group 1; KEGG: blo:BL0826 possible glycosyltransferase YP_002322937.1 KEGG: blo:BL0827 hypothetical protein YP_002322938.1 KEGG: blo:BL0828 hypothetical protein YP_002322939.1 PFAM: extracellular solute-binding protein, family 5; KEGG: blo:BL0829 probable oligopeptide binding protein of ABC transporter YP_002322940.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_002322941.1 PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: blo:BL0834 glutamate synthase [NADPH] large subunit; NADPH-gogat YP_002322942.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: blo:BL0838 LacI-type transcriptional regulator YP_002322943.1 PFAM: glycerate kinase; KEGG: blo:BL0845 glycerate kinase YP_002322944.1 KEGG: blo:BL0847 probable oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002322945.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002322946.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002322947.1 PFAM: protein of unknown function UPF0126; KEGG: blo:BL0850 conserved hypothetical transmembrane protein with unknown function YP_002322948.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: blo:BL0851 conserved hypothetical protein similar to MazG YP_002322949.1 PFAM: phage integrase family protein; KEGG: lxx:Lxx03570 phage-related integrase YP_002322950.1 KEGG: gvi:glr3897 hypothetical protein YP_002322954.1 KEGG: cdi:DIP1959 hypothetical protein YP_002322955.1 PFAM: helix-turn-helix domain protein YP_002322961.1 KEGG: mav:MAV_0830 GP60 protein YP_002322964.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ret:RHE_CH02108 single-strand DNA binding protein YP_002322967.1 KEGG: spu:760189 similar to protocadherin YP_002322968.1 KEGG: llc:LACR_1118 hypothetical protein YP_002322975.1 PFAM: transcription factor WhiB; KEGG: ace:Acel_0457 transcription factor WhiB YP_002322977.1 KEGG: nfa:nfa15070 hypothetical protein YP_002322984.1 KEGG: xfa:XF2506 hypothetical protein YP_002322985.1 KEGG: dvu:DVU1515 type II DNA modification methyltransferase, TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_002322986.1 PFAM: BRO domain protein domain protein; phage antirepressor protein; KEGG: spm:spyM18_0723 antirepressor YP_002322992.1 KEGG: bad:BAD_0595 hypothetical protein YP_002322995.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: lpl:lp_1207 hypothetical protein YP_002323002.1 PFAM: Cpl-7 lysozyme, C-terminal domain protein; KEGG: sps:SPs0769 N-acetylmuramoyl-L-alanine amidase YP_002323003.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: nfa:nfa2500 hypothetical protein YP_002323005.1 KEGG: nfa:nfa15220 hypothetical protein YP_002323010.1 KEGG: nfa:nfa15280 hypothetical protein YP_002323018.1 KEGG: cell wall surface anchor family protein YP_002323020.1 PFAM: Fibronectin, type III domain protein; KEGG: eli:ELI_15060 hypothetical protein YP_002323024.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cef:CE1291 insertion element conserved hypothetical protein YP_002323028.1 PFAM: glycoside hydrolase, family 25; Peptidoglycan-binding LysM; Cpl-7 lysozyme, C-terminal domain protein; KEGG: efa:EF2086 endolysin YP_002323029.1 KEGG: efa:EF2803 holin YP_002323031.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002323032.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_002323033.1 KEGG: blo:BL0855 hypothetical protein YP_002323034.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: blo:BL0856 NAD(P) transhydrogenase subunit beta YP_002323035.1 KEGG: fra:Francci3_2947 NAD/NADP transhydrogenase alpha subunit-like YP_002323036.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: blo:BL0857 NAD(P) transhydrogenase subunit alpha part 1 YP_002323037.1 PFAM: AMP-dependent synthetase and ligase; KEGG: blo:BL0858 long-chain-fatty-acid-CoA ligase YP_002323038.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002323039.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: blo:BL0860 probable conserved integral membrane protein with CBS domain YP_002323040.1 PFAM: protein of unknown function UPF0054; KEGG: blo:BL0861 conserved hypothetical protein with duf0054 YP_002323041.1 PFAM: PhoH family protein; KEGG: blo:BL0862 PhoH-like protein YP_002323042.1 PFAM: histidine triad (HIT) protein; KEGG: blo:BL0863 hypothetical protein in Hit family YP_002323043.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002323044.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: blo:BL0865 possible tRNA/rRNA methyltransferase YP_002323045.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_002323046.1 PFAM: protein of unknown function DUF59; KEGG: blo:BL0867 conserved hypothetical protein with duf59 YP_002323047.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: blo:BL0868 NifU-like domain YP_002323048.1 KEGG: blo:BL0869 NifS-like aminotranferase; TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V YP_002323049.1 KEGG: blo:BL0870 probable ATP binding protein of ABC transporter; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; SMART: AAA ATPase YP_002323050.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: blo:BL0871 possible ABC transporter component YP_002323051.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: blo:BL0872 possible ABC transporter component YP_002323052.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002323053.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_002323054.1 catalyzes the formation of shikimate 3-phosphate from shikimate and the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_002323055.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002323056.1 KEGG: nca:Noca_2411 peptidase A24A, prepilin type IV YP_002323057.1 PFAM: aminodeoxychorismate lyase; KEGG: blo:BL0880 conserved hypothetical protein with duf175 YP_002323058.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H domain protein fold; KEGG: blo:BL0881 Holliday junction resolvase YP_002323059.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002323061.1 KEGG: bad:BAD_0699 secreted protein YP_002323062.1 PFAM: Phosphoglycerate mutase; KEGG: blo:BL0884 phosphoglycerate mutase family YP_002323063.1 PFAM: RelB antitoxin YP_002323065.1 SMART: transglutaminase domain protein; KEGG: bha:BH0890 hypothetical protein YP_002323067.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_002323068.1 PFAM: peptidase C26; KEGG: blo:BL0271 possible amidotransferase subunit YP_002323069.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002323070.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0887 ATP binding protein of ABC transporter YP_002323071.1 PFAM: protein of unknown function DUF214; KEGG: blo:BL0888 hypothetical transmembrane protein with unknown function YP_002323072.1 KEGG: blo:BL0889 hypothetical protein YP_002323073.1 PFAM: UvrD/REP helicase; KEGG: blo:BL0890 ATP-dependent DNA helicase PcrA YP_002323074.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_002323075.1 PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: blo:BL0892 xanthine/uracil permease YP_002323076.1 SMART: helix-turn-helix domain protein; KEGG: blo:BL0893 hypothetical protein with probable helix turn helix motif YP_002323077.1 KEGG: blo:BL0895 narrowly conserved hypothetical protein YP_002323078.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: blo:BL0896 hypothetical protein YP_002323079.1 PFAM: isochorismatase hydrolase; KEGG: blo:BL0897 probable pyrazinamidase/nicotinamidase YP_002323080.1 PFAM: peptidase S51, dipeptidase E; KEGG: lin:lin0382 similar to Salmonella typhimurium peptidase E YP_002323083.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; KEGG: fra:Francci3_1856 excisionase/Xis, DNA-binding YP_002323084.1 KEGG: hch:HCH_06453 hypothetical protein YP_002323085.1 PFAM: AAA-4 family protein; KEGG: blo:BL0898 hypothetical protein YP_002323086.1 PFAM: ABC-2 type transporter; KEGG: blo:BL0899 hypothetical protein YP_002323087.1 KEGG: blo:BL0900 hypothetical protein YP_002323088.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0901 probable ATP binding protein of ABC transporter YP_002323089.1 PFAM: histidine kinase, dimerisation and phosphoacceptor region; KEGG: blo:BL0902 histidine kinase sensor of two-component system YP_002323090.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: blo:BL0903 response regulator of two-component system YP_002323091.1 PFAM: protein of unknown function DUF47; KEGG: blo:BL0904 conserved hypothetical protein with duf47 YP_002323092.1 PFAM: phosphate transporter; KEGG: blo:BL0905 inorganic phosphate transporter, PiT family YP_002323093.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: blo:BL0907 possible cyclomaltodextrinase or neopullalanase YP_002323094.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: blo:BL0909 possible ATP-dependent RNA helicase YP_002323095.1 TIGRFAM: uracil-xanthine permease; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: blo:BL0910 probable purine or uracil permease YP_002323096.1 PFAM: Phosphoglycerate mutase; KEGG: blo:BL0911 hypothetical protein possibly in the phosphoglycerate mutase family YP_002323097.1 KEGG: blo:BL0912 hypothetical protein YP_002323098.1 PFAM: major facilitator superfamily MFS_1; KEGG: blo:BL0919 possible efflux transporter protein YP_002323099.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll1110 hypothetical protein YP_002323100.1 PFAM: protein of unknown function DUF81; KEGG: bad:BAD_0618 hypothetical protein YP_002323101.1 KEGG: bad:BAD_0612 family M20D unassigned peptidase YP_002323102.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: bad:BAD_0611 ferrous iron transport protein B YP_002323103.1 PFAM: FeoA family protein; KEGG: bad:BAD_0610 hypothetical protein YP_002323104.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: CBS domain containing protein; major facilitator superfamily MFS_1; KEGG: blo:BL0920 possible efflux transporter protein YP_002323105.1 KEGG: blo:BL0921 hypothetical protein YP_002323106.1 KEGG: blo:BL0922 hypothetical protein YP_002323107.1 KEGG: efa:EF0354 holin YP_002323108.1 PFAM: glycoside hydrolase, family 25; Peptidoglycan-binding LysM; KEGG: efa:EF2086 endolysin YP_002323110.1 KEGG: lxx:Lxx03960 phage-related terminase YP_002323112.1 SMART: HNH nuclease; KEGG: sak:SAK_0630 prophage LambdaSa03, HNH endonuclease family protein YP_002323116.1 PFAM: Integrase, catalytic region; KEGG: hha:Hhal_1276 integrase, catalytic region YP_002323117.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sat:SYN_01888 ATPase components of ABC transporters with duplicated ATPase domains YP_002323118.1 PFAM: GCN5-related N-acetyltransferase; KEGG: smu:SMU.639 acetyltransferase YP_002323119.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bam:Bamb_1718 phosphoserine phosphatase SerB YP_002323120.1 KEGG: blo:BL1489 hypothetical protein with limited similarity to PrgB aggregation substance YP_002323124.1 KEGG: sag:SAG1289 Tn5252, Orf23 YP_002323126.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bad:BAD_1375 transposase YP_002323127.1 KEGG: bat:BAS0415 prophage LambdaBa04, site-specific recombinase, phage integrase family YP_002323128.1 PFAM: regulatory protein, TetR; KEGG: blo:BL1271 possible TetR-type transcriptional regulator YP_002323129.1 PFAM: major facilitator superfamily MFS_1; KEGG: blo:BL1270 hypothetical transmembrane protein possibly involved in uptake or efflux YP_002323131.1 KEGG: dsy:DSY2901 hypothetical protein YP_002323132.1 PFAM: RelB antitoxin YP_002323133.1 PFAM: PemK family protein; KEGG: bad:BAD_0978 hypothetical protein YP_002323134.1 KEGG: bad:BAD_0847 hypothetical protein YP_002323135.1 PFAM: Methyltransferase type 11; KEGG: cdi:DIP0762 hypothetical protein YP_002323136.1 PFAM: protein of unknown function DUF307; KEGG: bad:BAD_1359 hypothetical protein YP_002323137.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: bad:BAD_1392 bacterial regulatory protein YP_002323139.1 PFAM: ABC transporter; KEGG: bcl:ABC0846 excinuclease ABC subunit A YP_002323140.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: swo:Swol_0313 hypothetical protein YP_002323141.1 PFAM: TfoX, C-terminal domain protein; KEGG: swo:Swol_2034 hypothetical protein YP_002323142.1 PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; KEGG: dsy:DSY2786 hypothetical protein YP_002323143.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002323144.1 KEGG: bad:BAD_0608 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_002323145.1 KEGG: blo:BL0928 proline iminopeptidase YP_002323146.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: bad:BAD_0606 histidine kinase sensor of two-component system YP_002323147.1 PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; Sigma-70, region 4 type 2; KEGG: bad:BAD_0605 response regulator of two-component system YP_002323148.1 PFAM: protein of unknown function DUF214; KEGG: blo:BL0931 possible transport protein YP_002323149.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0932 possible ATP binding protein of ABC transporter YP_002323150.1 KEGG: blo:BL0933 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_002323151.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: blo:BL0934 possible pyridoxine kinase YP_002323152.1 PFAM: protein of unknown function UPF0102; KEGG: blo:BL0935 predicted endonuclease YP_002323153.1 KEGG: blo:BL0936 conserved hypothetical protein in chelatase subunits D/I family; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase YP_002323154.1 PFAM: SMF family protein; KEGG: blo:BL0937 hypothetical protein with partial similarity to smf DNA processing protein YP_002323155.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: blo:BL0938 succinate dehydrogenase flavoprotein subunit YP_002323156.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: blo:BL0939 probable iron sulfur protein associated with succinate dehydrogenase/fumarate reductase YP_002323157.1 PFAM: O-methyltransferase, family 3; KEGG: blo:BL0940 probable methyltransferase YP_002323158.1 PFAM: conserved hypothetical protein 730; KEGG: blo:BL0941 hypothetical protein YP_002323159.1 PFAM: Na+/H+ antiporter NhaA; sodium/hydrogen exchanger; KEGG: blo:BL0942 probable sodium/proton antiporter YP_002323160.1 binds and unfolds substrates as part of the ClpXP protease YP_002323161.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002323162.1 PFAM: peptidase S14, ClpP; KEGG: blo:BL0945 ATP-dependent Clp protease proteolytic subunit 1 YP_002323164.1 PFAM: Cl- channel, voltage-gated family protein; KEGG: blo:BL0946 hypothetical protein YP_002323165.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002323166.1 PFAM: 3'-5' exonuclease; KEGG: blo:BL0948 ribonuclease D YP_002323167.1 KEGG: blo:BL0949 narrowly conserved hypothetical protein YP_002323168.1 TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein; KEGG: blo:BL0950 pyruvate formate-lyase 1 activating enzyme YP_002323169.1 KEGG: blo:BL0951 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL YP_002323170.1 KEGG: blo:BL0952 hypothetical protein YP_002323171.1 KEGG: blo:BL0953 glutamine-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase YP_002323172.1 KEGG: blo:BL0954 widely conserved hypothetical protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002323173.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL0955 permease protein of ABC transporter system YP_002323174.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0956 ATP binding protein of ABC transporter YP_002323175.1 PFAM: NLPA lipoprotein; KEGG: blo:BL0957 hypothetical protein with similarity to proteins in NlpA family of lipoproteins YP_002323176.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: blo:BL0959 xylulose-5-phosphate/fructose-6-phosphate phosphoketolase YP_002323177.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002323178.1 PFAM: acyltransferase 3; KEGG: blo:BL0962 hypothetical membrane protein with possible acetylase function YP_002323179.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002323180.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_002323181.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: blo:BL0965 hypothetical protein with duf143 YP_002323182.1 PFAM: Phosphoglycerate mutase; KEGG: blo:BL0966 phosphoglycerate mutase YP_002323183.1 KEGG: blo:BL0968 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase YP_002323184.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: blo:BL0969 acetate kinase YP_002323185.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002323186.1 KEGG: blo:BL0971 hypothetical protein YP_002323188.1 KEGG: spd:SPD_0484 hypothetical protein YP_002323189.1 KEGG: spm:spyM18_1484 hypothetical protein YP_002323192.1 PFAM: phage integrase family protein; KEGG: mmc:Mmcs_4828 phage integrase YP_002323193.1 KEGG: blo:BL0982 probable glycogen operon protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_002323194.1 PFAM: NUDIX hydrolase; KEGG: blo:BL0983 possible pyrophosphate-releasing NTPase in MutT family YP_002323195.1 PFAM: protein of unknown function DUF34; KEGG: blo:BL0984 conserved hypothetical protein with duf34 YP_002323196.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_002323197.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: blo:BL0986 conserved hypothetical protein with a response regulator receiver domain YP_002323198.1 PFAM: pyruvate kinase; KEGG: blo:BL0988 pyruvate kinase YP_002323199.1 PFAM: Integral membrane protein TerC; KEGG: blo:BL0989 widely conserved hypothetical protein with similarity to tellurium resistance protein YP_002323200.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002323201.1 KEGG: bad:BAD_1443 hypothetical protein YP_002323202.1 PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; KEGG: bad:BAD_1442 two-component response regulator YP_002323203.1 TIGRFAM: bacteriocin, lactococcin 972 family; KEGG: dsy:DSY2024 hypothetical protein YP_002323204.1 KEGG: lla:L80344 unknown protein YP_002323205.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: tfu:Tfu_0812 ABC-type antimicrobial peptide transport system ATPase component YP_002323206.1 KEGG: bad:BAD_0675 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_002323207.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002323208.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002323209.1 PFAM: periplasmic solute binding protein; KEGG: blo:BL0994 possible solute binding protein of ABC transporter system YP_002323210.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0995 ATP binding protein of ABC transporter YP_002323211.1 PFAM: ABC-3 protein; KEGG: blo:BL0996 possible permease of ABC transporter system YP_002323212.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_002323213.1 PFAM: transcription factor CarD; KEGG: blo:BL0998 possible transcriptional regulator YP_002323214.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_002323215.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: blo:BL1000 response regulator of two-component system YP_002323216.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: blo:BL1001 histidine kinase sensor of two-component system YP_002323217.1 PFAM: peptidase S24, S26A and S26B; KEGG: blo:BL1002 hypothetical protein with similarity to ImpA of Salmonella involved in UV protection and mutation YP_002323218.1 PFAM: phosphoribosyltransferase; KEGG: blo:BL1003 hypothetical protein with phosphoribosylpyrophosphate transferase domain and similarity to OrfS annotated as ComF protein YP_002323219.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: phosphomannomutase; KEGG: blo:BL1004 hypothetical protein with similarity to eukaryotic phosphomannomutases YP_002323220.1 KEGG: blo:BL1005 hypothetical protein YP_002323221.1 KEGG: blo:BL1006 hypothetical protein YP_002323222.1 KEGG: blo:BL1007 narrowly conserved hypothetical protein YP_002323223.1 PFAM: transcription factor WhiB; KEGG: blo:BL1008 WhiB-type transcription regulator YP_002323224.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: blo:BL1009 hypothetical protein with similarity to transcriptional regulator of streptomyces YP_002323225.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: blo:BL1010 hypothetical protein with FtsK/SpoIIIE domain YP_002323226.1 PFAM: transcription factor WhiB; KEGG: blo:BL1011 WhiB-type transcription regulator YP_002323227.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; PAS fold-4 domain protein; KEGG: blo:BL1012 histidine kinase-like protein YP_002323228.1 PFAM: Hly-III family protein; KEGG: blo:BL1014 hypothetical protein YP_002323229.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: blo:BL1015 transcription elongation factor GreA YP_002323230.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: blo:BL1016 Fk506-binding protein YP_002323231.1 KEGG: blo:BL1017 L-serine dehydratase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_002323232.1 KEGG: bad:BAD_0649 Cd efflux system component YP_002323233.1 PFAM: phage integrase family protein; KEGG: nfa:nfa2390 phage integrase YP_002323234.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: bad:BAD_1392 bacterial regulatory protein YP_002323235.1 PFAM: protein of unknown function DUF450; KEGG: art:Arth_3617 protein of unknown function DUF450 YP_002323236.1 KEGG: cdi:DIP1959 hypothetical protein YP_002323244.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: blo:BL0415 single-strand binding protein YP_002323245.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: ttj:TTHA1969 chromosome partitioning protein, ParB family YP_002323246.1 KEGG: nfa:nfa14930 hypothetical protein YP_002323248.1 KEGG: lxx:Lxx14150 oligoribonuclease YP_002323257.1 KEGG: lla:L44240 prophage pi3 protein 38 YP_002323262.1 KEGG: spz:M5005_Spy_1196 HNH endonuclease family protein YP_002323264.1 PFAM: phage Terminase; KEGG: lxx:Lxx03960 phage-related terminase YP_002323265.1 PFAM: protein of unknown function DUF1483; KEGG: sag:SAG0582 hypothetical protein YP_002323266.1 KEGG: lxx:Lxx03905 hypothetical protein YP_002323267.1 KEGG: cne:CNI00720 transporter YP_002323268.1 KEGG: spz:M5005_Spy_1187 phage structural protein YP_002323270.1 KEGG: lxx:Lxx03865 hypothetical protein YP_002323274.1 KEGG: sak:SAK_0642 prophage LambdaSa03, structural protein YP_002323276.1 TIGRFAM: phage tape measure protein; KEGG: blo:BL0381 phage related protein: minor tail protein YP_002323278.1 PFAM: Fibronectin, type III domain protein; KEGG: bba:Bd2872 hypothetical protein YP_002323284.1 PFAM: glycoside hydrolase, family 25; Peptidoglycan-binding LysM; Cpl-7 lysozyme, C-terminal domain protein; KEGG: efa:EF2086 endolysin YP_002323285.1 KEGG: efa:EF2803 holin YP_002323286.1 PFAM: Ppx/GppA phosphatase; KEGG: blo:BL1019 possible exopolyphosphatase-like protein YP_002323287.1 PFAM: protein of unknown function DUF501; KEGG: blo:BL1020 hypothetical protein YP_002323288.1 PFAM: Septum formation initiator; KEGG: blo:BL1021 hypothetical protein YP_002323289.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002323290.1 PFAM: aldo/keto reductase; KEGG: blo:BL1023 possible oxidoreductase in aldo-keto reductase family YP_002323291.1 KEGG: blo:BL1025 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_002323292.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002323293.1 PFAM: PilT protein domain protein; KEGG: tde:TDE0698 PIN domain protein YP_002323294.1 PFAM: GCN5-related N-acetyltransferase; KEGG: blo:BL1028 possible N-acetyl transferase YP_002323295.1 PFAM: protein of unknown function UPF0182; KEGG: blo:BL1029 narrowly conserved hypothetical protein YP_002323296.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: blo:BL1031 possible B-hexosaminidase YP_002323297.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_002323298.1 KEGG: blo:BL1033 hypothetical protein YP_002323299.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002323300.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002323301.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002323302.1 PFAM: protein of unknown function DUF1648; KEGG: cac:CAC0600 predicted membrane protein YP_002323303.1 PFAM: regulatory protein GntR, HTH; KEGG: swo:Swol_1390 transcriptional regulator, GntR family YP_002323305.1 KEGG: blo:BL1040 hypothetical protein YP_002323306.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL1041 ATP binding protein of ABC transporter YP_002323307.1 PFAM: regulatory protein GntR, HTH; KEGG: blo:BL1041a possible GntR-family transcriptional regulator YP_002323308.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bad:BAD_0047 response regulator of two-component system YP_002323309.1 KEGG: bad:BAD_0054 exodeoxyribonuclease V YP_002323310.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO6805 integral membrane efflux protein YP_002323311.1 PFAM: ExsB family protein; KEGG: afu:AF0442 succinoglycan biosynthesis regulator (ExsB) YP_002323312.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: blo:BL1042 possible hydrolyase with Pf00702 domain YP_002323313.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: blo:BL1043 DNA repair protein RecN YP_002323314.1 catalyzes the phosphorylation of NAD to NADP YP_002323315.1 KEGG: blo:BL1047 hypothetical protein YP_002323316.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: blo:BL1048 hemolysin-like protein with S4 domain found in bacteria and plants YP_002323317.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: blo:BL1049 conserved hypothetical protein with possible phosphatase function YP_002323318.1 KEGG: blo:BL1050 hypothetical protein YP_002323319.1 KEGG: blo:BL1051 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; RNA-binding S4 domain protein YP_002323320.1 KEGG: blo:BL1052 hypothetical protein YP_002323321.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: blo:BL1053 hypothetical protein in metal-dependent hydrolase family YP_002323322.1 SMART: Rhodanese domain protein; KEGG: blo:BL1053a conserved hypothetical protein with rhodanese-like domain YP_002323323.1 TIGRFAM: thiazole biosynthesis adenylyltransferase ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: blo:BL1054 thiamine biosynthesis protein YP_002323324.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_002323325.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: blo:BL1055a thiamine biosynthesis ThiS YP_002323326.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_002323327.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_002323328.1 PFAM: arginine repressor; KEGG: blo:BL1059 arginine repressor-like protein YP_002323329.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_002323330.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_002323331.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_002323332.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_002323333.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_002323334.1 KEGG: blo:BL1065 hypothetical protein YP_002323335.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002323336.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002323337.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: blo:BL1068 possible rRNA methylase YP_002323338.1 PFAM: cobalt transport protein; KEGG: blo:BL1069 possible permease protein of ABC transporter for cobalt YP_002323339.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL1070 ATP binding protein of ABC transporter YP_002323340.1 KEGG: blo:BL1071 narrowly conserved hypothetical protein YP_002323341.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: blo:BL1072 hypothetical protein YP_002323342.1 KEGG: blo:BL1073 hypothetical protein YP_002323343.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: blo:BL1074 dihydrolipoamide dehydrogenase YP_002323344.1 KEGG: blo:BL1075 narrowly conserved hypothetical transmembrane protein YP_002323345.1 KEGG: blo:BL1076 glutamine synthetase 1; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp YP_002323346.1 PFAM: Auxin Efflux Carrier; KEGG: blo:BL1078 possible integral membrane permease protein YP_002323347.1 KEGG: blo:BL1080 galactoside O-acetyltransferase YP_002323348.1 KEGG: blo:BL1080 galactoside O-acetyltransferase YP_002323349.1 PFAM: transcriptional regulator PadR family protein; KEGG: sco:SCO4465 hypothetical protein YP_002323350.1 PFAM: HhH-GPD family protein; KEGG: blo:BL1081 possible endonuclease III YP_002323351.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: blo:BL1082 conserved hypothetical transmembrane protein in upf0013 YP_002323352.1 PFAM: ABC transporter; KEGG: blo:BL1083 excinuclease ABC subunit A-like protein YP_002323353.1 KEGG: blo:BL1084 hypothetical protein YP_002323355.1 PFAM: glycoside hydrolase, family 1; KEGG: sco:SCO7558 beta-glucosidase YP_002323356.1 KEGG: sde:Sde_2370 electron transport complex, RnfABCDGE type, D subunit YP_002323357.1 PFAM: protein of unknown function DUF303, acetylesterase KEGG: bad:BAD_0083 sialic acid-specific 9-O-acetylesterase YP_002323358.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ooe:OEOE_1772 signal transduction histidine kinase YP_002323359.1 PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: bad:BAD_1279 IS3 family transposase YP_002323360.1 KEGG: blo:BL1089 hypothetical protein YP_002323361.1 PFAM: protein of unknown function DUF214; KEGG: dsy:DSY1326 hypothetical protein YP_002323362.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cac:CAC0822 ABC transporter, ATP-binding protein YP_002323363.1 PFAM: regulatory protein, TetR; KEGG: dsy:DSY2841 hypothetical protein YP_002323364.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cjk:jk0343 transposase for IS3510b YP_002323365.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: blo:BL1090 possible alcohol dehydrogenase YP_002323366.1 PFAM: Camphor resistance CrcB protein; KEGG: blo:BL1091 protein with similarity to CrcB YP_002323367.1 PFAM: Camphor resistance CrcB protein; KEGG: blo:BL1092 protein with similarity to CrcB YP_002323369.1 PFAM: conserved hypothetical protein 698; KEGG: blo:BL1094 hypothetical protein YP_002323370.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002323371.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002323372.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002323373.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002323374.1 KEGG: blo:BL1101 hypothetical protein YP_002323375.1 PFAM: Abi family protein; KEGG: bad:BAD_0976 conserved hypothetical phage AbiD protein YP_002323376.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: cef:CE1498 transposase YP_002323377.1 PFAM: IstB domain protein ATP-binding protein; KEGG: bad:BAD_1376 insertion element conserved hypothetical protein YP_002323378.1 KEGG: bad:BAD_1375 transposase YP_002323379.1 PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: bad:BAD_1279 IS3 family transposase YP_002323380.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: nca:Noca_1021 ABC transporter YP_002323381.1 KEGG: nca:Noca_4498 hypothetical protein YP_002323382.1 PFAM: Bile acid:sodium symporter; KEGG: blo:BL1102 probable Na+ dependent transporter possibly for ileal bile acids YP_002323383.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: blo:BL1103 possible low specificity-threonine aldolase YP_002323384.1 PFAM: glycosyl transferase, group 1; KEGG: blo:BL1104 possible glycosyltransferase YP_002323385.1 PFAM: aminotransferase, class I and II; KEGG: lin:lin0314 aminotransferase YP_002323386.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_002323387.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll1110 hypothetical protein YP_002323388.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002323389.1 KEGG: blo:BL1108 phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein YP_002323390.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: blo:BL1109 possible carboxylesterase or lipase YP_002323391.1 KEGG: blo:BL1110 hypothetical protein YP_002323393.1 KEGG: bad:BAD_0872 hypothetical protein YP_002323394.1 PFAM: HipA domain protein; KEGG: plu:plu2423 hypothetical protein YP_002323395.1 KEGG: fnu:FN1997 transcriptional regulator YP_002323397.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: blo:BL1114 DNA polymerase V YP_002323398.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_002323399.1 PFAM: amidohydrolase; KEGG: blo:BL1116 possible chlorohydrolase-like protein YP_002323400.1 PFAM: protein of unknown function DUF985; KEGG: blo:BL1117 narrowly conserved hypothetical protein YP_002323401.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: blo:BL1118 probable amino-acid binding protein for ABC transporter system YP_002323402.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL1119 probable permease protein for ABC transporter system for amino-acids YP_002323403.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL1120 probable ATP binding protein of ABC transporter for amino-acids YP_002323404.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase, class-II; phosphoribosyltransferase; KEGG: blo:BL1121 amidophosphoribosyltransferase precursor YP_002323405.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002323406.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002323407.1 PFAM: aldehyde dehydrogenase; KEGG: blo:BL1124 fatty aldehyde dehydrogenase YP_002323408.1 PFAM: sulfatase; KEGG: blo:BL1125 hypothetical protein with similarity to orf7 exopolysaccharide biosynthesis protein of S. mutans YP_002323409.1 PFAM: periplasmic solute binding protein; KEGG: blo:BL1126 probable solute binding protein of ABC transporter system YP_002323411.1 PFAM: ribosomal protein L28; KEGG: mkm:Mkms_4817 ribosomal protein L28 YP_002323412.1 PFAM: ribosomal protein L33; KEGG: nfa:nfa49760 ribosomal protein L33 YP_002323413.1 PFAM: ribosomal protein S14; KEGG: sco:SCO3430 30S ribosomal protein S14 YP_002323414.1 PFAM: ribosomal protein L31; KEGG: pac:PPA2157 50S ribosomal protein L31 type B YP_002323415.1 PFAM: ribosomal protein L36; KEGG: cdi:DIP1872 50S ribosomal protein L36 YP_002323416.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002323417.1 KEGG: lin:lin0191 similar to a probable high-affinity zinc ABC transporter (Zn(II)-binding lipoprotein) YP_002323418.1 PFAM: permease; KEGG: dsy:DSY0108 hypothetical protein YP_002323419.1 KEGG: dsy:DSY0109 hypothetical protein YP_002323420.1 PFAM: ferric-uptake regulator; KEGG: sma:SAV5631 metal uptake regulation protein YP_002323423.1 KEGG: bad:BAD_0770 ABC transporter YP_002323424.1 PFAM: ferric-uptake regulator; KEGG: blo:BL1128 probable metal uptake regulator similar to ferric uptake regulator protein YP_002323425.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_002323426.1 KEGG: blo:BL1130 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_002323427.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: blo:BL1131 NADPH:quinone oxidoreductases or alcohol dehydrogenase YP_002323428.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_002323429.1 PFAM: protein of unknown function DUF214; KEGG: blo:BL1133 protein with weak similarity to components of ABC transporter YP_002323430.1 KEGG: blo:BL1134 hypothetical protein YP_002323431.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL1135 ATP binding protein of ABC transporter YP_002323432.1 KEGG: blo:BL1136 hypothetical protein YP_002323433.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: blo:BL1137 protein similar to hex regulon repressor YP_002323434.1 KEGG: blo:BL1138 similar to alpha-L-arabinofuranosidase A YP_002323436.1 KEGG: blo:BL1142 L-asparaginase precursor YP_002323437.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: blo:BL1144 probable multiple substrate aminotransferase (MsaT) containing domain of GntR family YP_002323438.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_002323439.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_002323440.1 synthesizes RNA primers at the replication forks YP_002323441.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_002323442.1 KEGG: blo:BL1149 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_002323443.1 PFAM: amino acid permease-associated region; KEGG: blo:BL1150 probable amino acid transporter YP_002323444.1 KEGG: blo:BL1151 hypothetical protein YP_002323445.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_002323446.1 KEGG: blo:BL1153 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_002323447.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: blo:BL1154 hypothetical protein YP_002323448.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: blo:BL1155 cystathionine gamma-synthase YP_002323449.1 KEGG: blo:BL1156 cystathionine beta-synthase YP_002323451.1 PFAM: major facilitator superfamily MFS_1; KEGG: cpr:CPR_1279 tetracycline resistance protein YP_002323452.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: bad:BAD_1486 nucleoside hydrolase protein YP_002323453.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL1157 probable ATP binding protein of ABC transporter for peptides YP_002323454.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL1158 probable ATP-binding protein of ABC transporter system for peptides YP_002323455.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL1159 probable ABC transporter permease protein for peptides YP_002323456.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_0480 similar to ABC transporter permease protein for peptides YP_002323457.1 PFAM: extracellular solute-binding protein, family 5; KEGG: bad:BAD_0479 solute binding protein of ABC transporter systemy for peptides YP_002323458.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: bad:BAD_0478 phosphopantothenoylcysteine decarboxylase YP_002323459.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_002323460.1 PFAM: extracellular solute-binding protein, family 1; KEGG: blo:BL1163 probable solute binding protein of ABC transporter system for sugars YP_002323461.1 PFAM: glycoside hydrolase, family 42, N-terminal domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase C-terminal domain protein; KEGG: blo:BL1168 beta-galactosidase I YP_002323462.1 PFAM: pseudouridine synthase; KEGG: blo:BL1174 possible ribosomal pseudouridine synthase YP_002323463.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002323464.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL1176 ATP binding protein of ABC transporter YP_002323465.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL1177 permease protein of ABC transporter system YP_002323466.1 PFAM: extracellular solute-binding protein, family 3; KEGG: blo:BL1178 probable solute binding protein of ABC transporter system YP_002323467.1 PFAM: extracellular solute-binding protein, family 3; KEGG: blo:BL1179 probable solute binding protein of ABC transporter system YP_002323468.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_002323469.1 PFAM: CHAP domain containing protein; KEGG: blo:BL1181 hypothetical protein with weak C-terminal similarity to TraG YP_002323470.1 PFAM: protein of unknown function DUF214; KEGG: blo:BL1182 FtsX-like protein involved in cell division YP_002323471.1 KEGG: blo:BL1183 FtsE-like ATP binding protein involved in cell division; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter; SMART: AAA ATPase YP_002323472.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_002323473.1 KEGG: blo:BL1089 hypothetical protein YP_002323474.1 KEGG: blo:BL1185 hypothetical protein YP_002323475.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002323476.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002323477.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: blo:BL1191 aminopeptidase N YP_002323478.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: blo:BL1192 widely conserved hypothetical protein with metallo-beta-lactamase domain YP_002323479.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002323480.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002323481.1 PFAM: major facilitator superfamily MFS_1; KEGG: blo:BL1195 possible transport protein YP_002323482.1 PFAM: UvrD/REP helicase; KEGG: blo:BL1196 widely conserved ATP-dependent DNA helicase; Rep-like protein YP_002323483.1 KEGG: blo:BL1197 large hypothetical protein YP_002323484.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: blo:BL1198 probable serine/threonine-protein kinase YP_002323485.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: blo:BL1199a methanol dehydrogenase regulatory protein homolog YP_002323486.1 PFAM: protein of unknown function DUF58; KEGG: blo:BL1200 narrowly conserved hypothetical protein with duf54 YP_002323487.1 PFAM: transglutaminase domain protein; KEGG: blo:BL1201 hypothetical protein with transglutaminase domain YP_002323488.1 KEGG: bad:BAD_1316 hypothetical protein YP_002323489.1 KEGG: bad:BAD_1317 hypothetical protein YP_002323490.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002323491.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002323492.1 KEGG: blo:BL1206 hypothetical protein YP_002323493.1 PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; KEGG: blo:BL1207 probable A/G-specific adenine glycosylase YP_002323494.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: blo:BL1208 probable RNA methyltransferase YP_002323496.1 PFAM: protein of unknown function DUF711; KEGG: blo:BL1209 hypothetical protein YP_002323497.1 ACT domain-containing protein YP_002323498.1 PFAM: glycosyl hydrolase family 32, N terminal domain protein; SMART: glycoside hydrolase, family 32; KEGG: bad:BAD_1325 beta-fructofuranosidase YP_002323499.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bad:BAD_1326 probable LacI-type transcriptional regulator YP_002323500.1 PFAM: protein of unknown function DUF624; KEGG: bad:BAD_1327 hypothetical protein YP_002323501.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1328 sugar ABC transporter permease YP_002323502.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1329 polysaccharide ABC transporter permease YP_002323503.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bad:BAD_1330 ABC transporter YP_002323504.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: blo:BL1210 galactokinase YP_002323505.1 KEGG: blo:BL1211 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein YP_002323506.1 PFAM: regulatory protein GntR, HTH; regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: blo:BL1212 probable DeoR-type transcriptional regulator YP_002323507.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_002323508.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: blo:BL1214 probable NADH-dependent flavin oxidoreductase YqjM YP_002323509.1 PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: blo:BL1215 possible penicillin-binding protein YP_002323510.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: blo:BL1216 probable transcriptional regulator with cyclic nucleotide-binding domain YP_002323511.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: blo:BL1217 probable lipoate protein ligase YP_002323512.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_002323513.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: blo:BL1219 protease II YP_002323514.1 KEGG: blo:BL1220 narrowly conserved hypothetical protein YP_002323515.1 TIGRFAM: glycine cleavage system H protein; PFAM: biotin/lipoyl attachment domain-containing protein; glycine cleavage H-protein; KEGG: blo:BL1221 glycine cleavage system H protein YP_002323516.1 PFAM: NUDIX hydrolase; KEGG: blo:BL1222 hypothetical protein with N-terminal similarity to NADH pyrophosphatase YP_002323517.1 PFAM: alpha/beta hydrolase fold; KEGG: blo:BL1223 possible alpha beta hydrolase YP_002323518.1 KEGG: blo:BL1224 narrowly conserved hypothetical protein YP_002323519.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: blo:BL1226 thioredoxin YP_002323520.1 PFAM: protein of unknown function DUF348; G5 domain protein; KEGG: blo:BL1227 narrowly conserved hypothetical protein YP_002323521.1 PFAM: helix-turn-helix domain protein; KEGG: rfr:Rfer_3385 transcriptional regulator, XRE family YP_002323522.1 PFAM: HipA domain protein; KEGG: xom:XOO_4246 HipA protein YP_002323523.1 KEGG: blo:BL1228 hypothetical protein YP_002323524.1 PFAM: lipopolysaccharide biosynthesis; KEGG: blo:BL1229 possible Etk-like tyrosine kinase involved in Eps biosynthesis YP_002323525.1 KEGG: blo:BL1231 hypothetical protein YP_002323526.1 PFAM: protein of unknown function DUF1526; KEGG: mag:amb1131 hypothetical protein YP_002323527.1 PFAM: Integrase, catalytic region; KEGG: mkm:Mkms_4381 integrase, catalytic region YP_002323528.1 KEGG: bad:BAD_1510 proline symporter YP_002323529.1 KEGG: bad:BAD_1363 ABC transporter YP_002323530.1 PFAM: helix-turn-helix domain protein; KEGG: bad:BAD_1364 transcriptional regulator YP_002323533.1 KEGG: llc:LACR_1678 hypothetical protein YP_002323535.1 KEGG: bad:BAD_1279 IS3 family transposase YP_002323536.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bad:BAD_1376 insertion element conserved hypothetical protein YP_002323537.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: cef:CE1498 transposase YP_002323538.1 KEGG: bad:BAD_1279 IS3 family transposase YP_002323539.1 PFAM: polysaccharide biosynthesis protein; KEGG: bfr:BF1095 flippase YP_002323541.1 PFAM: glycosyl transferase, family 2; KEGG: lbu:LBUL_1843 glycosyltransferase related enzyme YP_002323542.1 PFAM: transposase, mutator type; KEGG: bad:BAD_1367 transposase YP_002323543.1 KEGG: bad:BAD_0889 MFS permease YP_002323544.1 PFAM: glycosyl transferase, family 14; KEGG: glycosyltransferase YP_002323545.1 PFAM: Capsular polysaccharide synthesis; KEGG: lpl:lp_1177 polysaccharide biosynthesis protein YP_002323546.1 PFAM: glycosyl transferase, family 2; KEGG: spd:SPD_1199 glycosyl transferase, group 2 family protein YP_002323547.1 PFAM: glycosyl transferase, group 1; KEGG: dsy:DSY3320 hypothetical protein YP_002323548.1 KEGG: cpf:CPF_0915 polysaccharide polymerase protein YP_002323549.1 PFAM: glycosyl transferase, family 2; KEGG: bad:BAD_1382 hypothetical protein YP_002323550.1 KEGG: lsl:LSL_1574 glycosyltransferase YP_002323551.1 KEGG: xom:XOO_2166 IS1112 transposase YP_002323552.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: blo:BL0248 possible low molecular weight protein-tyrosine-phosphatase domain YP_002323553.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: cef:CE1291 insertion element conserved hypothetical protein YP_002323554.1 PFAM: sugar transferase; KEGG: blo:BL0249 undecaprenyl-phosphate sugar phosphotransferase YP_002323556.1 KEGG: blo:BL1230 hypothetical protein YP_002323557.1 PFAM: AAA-4 family protein; KEGG: psp:PSPPH_0105 carbon storage regulator related protein YP_002323559.1 KEGG: blo:BL0204 hypothetical protein YP_002323560.1 KEGG: nfa:nfa55970 hypothetical protein YP_002323561.1 PFAM: metallophosphoesterase; KEGG: sco:SCO7631 secreted protein YP_002323562.1 PFAM: glycoside hydrolase, family 42, N-terminal domain protein; Beta-galactosidase trimerisation domain protein; KEGG: bad:BAD_1401 beta-galactosidase I YP_002323563.1 PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: blo:BL1797 hypothetical proteasome-associated protein YP_002323564.1 KEGG: art:Arth_2175 protein of unknown function DUF797 YP_002323565.1 PFAM: inositol monophosphatase; KEGG: blo:BL1796 possible inositol monophosphatase YP_002323566.1 PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: blo:BL1795 hypothetical proteasome-associated protein YP_002323567.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: blo:BL1794 probable AAA-family ATPase YP_002323568.1 KEGG: blo:BL1793 hypothetical conserved transmembrane protein in the DedA family YP_002323569.1 KEGG: blo:BL1792 probable phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3 YP_002323570.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002323571.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: blo:BL1790 possible alpha beta hydrolase YP_002323572.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: blo:BL1789 methionyl-tRNA formyltransferase YP_002323573.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002323574.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_002323575.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002323576.1 PFAM: protein of unknown function DUF214; KEGG: blo:BL0269 ABC-type transporter similar to Vex3 (VexP3) of S. pneumoniae YP_002323577.1 PFAM: protein of unknown function DUF214; KEGG: blo:BL0268 ATP binding protein of ABC transporter similar to Vex1 (VexP1) of S. pneumoniae YP_002323578.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0267 ATP binding protein of ABC transporter similar to Vex2 (VexP2) of S. pneumoniae YP_002323579.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: blo:BL1667 low molecular weight protein-tyrosine-phosphatase YP_002323580.1 PFAM: dihydrofolate reductase region; KEGG: blo:BL1666 dihydrofolate reductase YP_002323581.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_002323582.1 PFAM: OsmC family protein; KEGG: blo:BL1664a hypothetical protein YP_002323583.1 PFAM: UspA domain protein; KEGG: blo:BL1664 widely conserved protein in universal stress protein family YP_002323584.1 PFAM: NLP/P60 protein; KEGG: blo:BL1663 hypothetical protein with C-terminal similarity to p60 invasion-associated protein of Listeria YP_002323585.1 PFAM: NLP/P60 protein; KEGG: blo:BL1662 hypothetical protein YP_002323586.1 PFAM: CHAP domain containing protein; KEGG: blo:BL1661 hypothetical protein with C-terminal homology to TrsG of S. aureus conjugation system YP_002323587.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_002323588.1 KEGG: blo:BL1659 hypothetical protein YP_002323589.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: blo:BL1658 histidine kinase sensor of two component system YP_002323590.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: blo:BL1657 response regulator of two-component system YP_002323591.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_002323592.1 KEGG: bad:BAD_0054 exodeoxyribonuclease V YP_002323593.1 PFAM: Resolvase helix-turn-helix domain protein; KEGG: bad:BAD_1284 DNA invertase-like protein YP_002323594.1 KEGG: bsu:BG11929 cytochrome p450 YP_002323595.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: tde:TDE2036 ATPase, AAA family YP_002323596.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: sru:SRU_2042 MoeZ/MoeB domain family YP_002323597.1 KEGG: cjk:jk1382 transposase for IS3509a YP_002323598.1 PFAM: major facilitator superfamily MFS_1; KEGG: ste:STER_1915 permease of the major facilitator superfamily YP_002323599.1 TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: bad:BAD_0377 probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_002323600.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002323601.1 PFAM: major facilitator superfamily MFS_1; KEGG: blo:BL1652 AraJ-like protein probably involved in transport of arabinose polymers YP_002323602.1 TIGRFAM: LPXTG-motif cell wall anchor domain; PFAM: phosphoesterase, PA-phosphatase related; 5'-Nucleotidase domain protein; KEGG: blo:BL0025 hypothetical secreted protein with probable acid phosphatase domain YP_002323603.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: blo:BL1651 hypothetical protein with N-terminal similarity to TPR repeat proteins and kinesin light chain isoform 3 YP_002323604.1 KEGG: blo:BL1650 hypothetical protein YP_002323605.1 KEGG: blo:BL1649 hypothetical membrane protein possibly involved in transport YP_002323606.1 KEGG: blo:BL1648 hypothetical protein YP_002323607.1 PFAM: PspC domain protein; KEGG: blo:BL1647 hypothetical protein YP_002323608.1 PFAM: ATP-binding region, ATPase domain protein domain protein; PspC domain protein; KEGG: blo:BL1646 possible histidine kinase sensor of two component system YP_002323609.1 PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: blo:BL1645 response regulator of two-component system YP_002323610.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: blo:BL1644 UDP-glucose 4-epimerase YP_002323611.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism YP_002323612.1 PFAM: aminoglycoside phosphotransferase; KEGG: blo:BL1642 desulfatase possibly for mucin YP_002323613.1 KEGG: blo:BL1641 hypothetical protein YP_002323614.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL1640 permease of ABC transporter for sugars YP_002323615.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL1639 permease of ABC transporter for sugars YP_002323616.1 PFAM: extracellular solute-binding protein, family 1; KEGG: blo:BL1638 solute binding protein of ABC transporter for sugars YP_002323617.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002323618.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: blo:BL1634 conserved hypothetical protein with possible diacylglycerol kinase-type catalytic domain YP_002323619.1 PFAM: PRD domain protein; KEGG: blo:BL1633 transcription antiterminator similar to LicT YP_002323620.1 PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: bad:BAD_1279 IS3 family transposase YP_002323621.1 PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: bad:BAD_0367 transcription antiterminator similar to LicT YP_002323622.1 TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease, EIIA 1 domain; phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: bad:BAD_0366 glucose-specific II BC component YP_002323623.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_002323624.1 KEGG: blo:BL1629 hypothetical protein YP_002323625.1 KEGG: blo:BL1628 narrowly conserved hypothetical protein YP_002323626.1 PFAM: protein of unknown function UPF0074; KEGG: blo:BL1627 hypothetical protein in upf0074 YP_002323627.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: blo:BL1626 possible class I pyridine nucleotide-disulfideoxidoreductase YP_002323629.1 PFAM: ribonuclease H; KEGG: blo:BL1624 ribonuclease H YP_002323630.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_002323631.1 KEGG: blo:BL1622 hypothetical protein YP_002323632.1 KEGG: blo:BL1621 hypothetical protein YP_002323633.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002323634.1 PFAM: Riboflavin kinase / FAD synthetase; KEGG: blo:BL1619 protein RibF [includes: riboflavin kinase (flavokinase); Fmn adenylyltransferase YP_002323635.1 KEGG: blo:BL1618 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein YP_002323636.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002323637.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002323638.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002323639.1 KEGG: blo:BL1614 hypothetical protein YP_002323640.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV1028 solute-binding lipoprotein YP_002323641.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7409 binding-protein dependent transport protein. YP_002323642.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1030 binding-protein dependent transport protein YP_002323643.1 KEGG: blo:BL1256 hypothetical protein with similarity to Mycoplasma fermentans orfE1 of insertion sequence IS1630em YP_002323644.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: blo:BL1610 narrowly conserved hypothetical protein in transglutaminase family YP_002323645.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: blo:BL1609 narrowly conserved hypothetical protein YP_002323646.1 KEGG: blo:BL1608 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_002323647.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002323648.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002323649.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002323650.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002323651.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_002323652.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002323653.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002323654.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002323655.1 late assembly protein YP_002323656.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002323657.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002323658.1 binds 5S rRNA along with protein L5 and L25 YP_002323659.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002323660.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002323661.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_002323662.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002323663.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002323664.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002323665.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002323666.1 PFAM: ribosomal protein L29; KEGG: blo:BL1588 50S ribosomal protein L29 YP_002323667.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002323668.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002323669.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002323670.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002323671.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002323672.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002323673.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002323674.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002323675.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002323676.1 PFAM: alpha-acetolactate decarboxylase; KEGG: lbr:LVIS_0492 alpha-acetolactate decarboxylase YP_002323677.1 KEGG: blo:BL1576 hypothetical protein YP_002323678.1 PFAM: iron-containing alcohol dehydrogenase; aldehyde dehydrogenase; KEGG: blo:BL1575 aldehyde-alcohol dehydrogenase 2 [includes: alcohol dehydrogenase (Adh); acetaldehyde dehydrogenase (AcdH)] YP_002323679.1 PFAM: ROK family protein; KEGG: blo:BL1574 probable repressor in the Rok (NagC/XylR) family YP_002323680.1 KEGG: blo:BL1573 probable glycogen operon protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_002323681.1 forms a direct contact with the tRNA during translation YP_002323682.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002323683.1 KEGG: blo:BL1570 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77 YP_002323684.1 PFAM: leucine rich repeat variant; KEGG: bad:BAD_0307 AbrB family trancriptional regulator fused to LRR containing domain YP_002323685.1 PFAM: protein of unknown function UPF0029; KEGG: blo:BL1569 conserved hypothetical protein in upf 0029 YP_002323686.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: blo:BL1568 possible 2-hydroxyacid dehydrogenase YP_002323687.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: blo:BL1565 DNA-damage-inducible protein P YP_002323688.1 catalyzes the formation of N-succinyl-LL-2,6-diaminopimelate from N-succinyl-L-2-amino-6-oxopimelate in lysine biosynthesis YP_002323689.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: blo:BL1563 ferredoxin YP_002323690.1 PFAM: amino acid permease-associated region; KEGG: blo:BL1562 possible cationic amino acid transporter YP_002323691.1 PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; KEGG: blo:BL1561 UDP-N-acetylenolpyruvoylglucosamine reductase YP_002323692.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_002323693.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002323694.1 KEGG: blo:BL1557 hypothetical protein YP_002323695.1 PFAM: GCN5-related N-acetyltransferase; KEGG: blo:BL1556 possible acetytransferase YP_002323696.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: blo:BL1555 hypothetical protein in the 5-formyltetrahydrofolate cyclo-ligase family YP_002323697.1 TIGRFAM: regulatory protein, FmdB family; KEGG: tfu:Tfu_0371 hypothetical protein YP_002323698.1 PFAM: SAF domain; KEGG: blo:BL1553 hypothetical protein YP_002323700.1 KEGG: blo:BL1552 large hypothetical protein YP_002323701.1 PFAM: Forkhead-associated protein; KEGG: blo:BL1551 hypothetical protein YP_002323702.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002323703.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002323704.1 KEGG: blo:BL1548 hypothetical protein YP_002323705.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: blo:BL1547 widely conserved hypothetical protein with xanthine/uracil permease signature YP_002323706.1 KEGG: blo:BL1546 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein YP_002323707.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002323708.1 PFAM: ABC transporter; KEGG: ana:alr1554 multidrug resistance protein YP_002323709.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sru:SRU_2370 daunorubicin resistance ATP-binding protein YP_002323712.1 KEGG: bad:BAD_0046 hypothetical protein YP_002323713.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: bad:BAD_0055 response regulator of two-component system YP_002323715.1 PFAM: Integrase, catalytic region; KEGG: fra:Francci3_4210 integrase YP_002323716.1 KEGG: bad:BAD_0258 hypothetical protein YP_002323719.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: blo:BL1538 protein with similarity to holo-[acyl-carrier protein] synthase YP_002323720.1 PFAM: beta-ketoacyl synthase; acyl transferase domain protein; MaoC domain protein dehydratase; domain of unknown function DUF1729; KEGG: blo:BL1537 Fas YP_002323721.1 PFAM: carboxyl transferase; KEGG: blo:BL1536 propionyl-CoA carboxylase beta chain YP_002323722.1 PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: blo:BL1535 acetyl-/propionyl-coenzyme A carboxylase alpha chain [includes: biotin carboxylase ; biotin carboxyl carrier protein (BccP)] YP_002323723.1 KEGG: blo:BL1534 hypothetical integral membrane with weak similarity to proteins in BioY family YP_002323724.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: blo:BL1533 biotin-[acetyl-CoA-carboxylase] ligase YP_002323725.1 KEGG: blo:BL1532 hypothetical protein YP_002323726.1 KEGG: blo:BL1531 narrowly conserved hypothetical protein YP_002323727.1 PFAM: regulatory proteins, IclR; KEGG: blo:BL1530 probable IclR-type transcriptional regulator YP_002323728.1 PFAM: regulatory proteins, IclR; KEGG: blo:BL1529 possible IclR-type transcriptional regulator YP_002323729.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002323730.1 binds directly to 23S ribosomal RNA YP_002323731.1 KEGG: blo:BL1288 probable transcription antitermination protein; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein YP_002323732.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002323733.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002323734.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002323735.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002323736.1 involved in the peptidyltransferase reaction during translation YP_002323737.1 PFAM: ribosomal protein L21; KEGG: blo:BL1282 50S ribosomal protein L21 YP_002323738.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: blo:BL1281 ribonuclease G YP_002323739.1 catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate YP_002323740.1 PFAM: Auxin Efflux Carrier; KEGG: blo:BL1279 hypothetical protein with unknown or transport function YP_002323741.1 PFAM: RbsD or FucU transport; KEGG: cpf:CPF_1050 fucose operon protein FucU YP_002323742.1 PFAM: amidohydrolase 2; KEGG: cff:CFF8240_1067 hypothetical protein YP_002323743.1 PFAM: major facilitator superfamily MFS_1; KEGG: cff:CFF8240_1066 L-fucose:H+ symporter permease YP_002323744.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: cff:CFF8240_1065 short chain dehydrogenase YP_002323745.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: aau:AAur_3801 mandelate racemase/muconate lactonizing enzyme YP_002323746.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sco:SCO4754 transcriptional regulator YP_002323747.1 PFAM: protein of unknown function DUF214; KEGG: blo:BL1278 hypothetical protein with unknown or transport function YP_002323748.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL1277 ATP-binding protein of ABC transporter system YP_002323749.1 KEGG: blo:BL0171 hypothetical protein YP_002323750.1 TIGRFAM: maf protein; PFAM: NUDIX hydrolase; Maf family protein; KEGG: blo:BL1276 hypothetical protein with MutT domain YP_002323751.1 KEGG: blo:BL1275 possible homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein YP_002323752.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002323753.1 KEGG: blo:BL1273 probable diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_002323754.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002323755.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: blo:BL1269 probable LysR-type transcriptional regulator YP_002323756.1 PFAM: aminotransferase, class I and II; KEGG: blo:BL1268 probable aminotransferase YP_002323757.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002323758.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: blo:BL1266 NADH oxidase YP_002323759.1 PFAM: dihydroorotate dehydrogenase; KEGG: blo:BL1265 hypothetical protein with similarity to dihydroorotate dehydrogenase YP_002323760.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_002323761.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_002323762.1 PFAM: regulatory proteins, IclR; KEGG: blo:BL1261 IclR-type transcriptional regulator YP_002323763.1 PFAM: metallophosphoesterase; KEGG: blo:BL1260 hypothetical protein YP_002323764.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_002323765.1 PFAM: NUDIX hydrolase; Phosphoglycerate mutase; KEGG: blo:BL1258 probable MutT1 protein YP_002323766.1 KEGG: bad:BAD_0125 hypothetical protein YP_002323767.1 TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: blo:BL0976 galactoside symporter YP_002323768.1 TIGRFAM: sugar (glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: bad:BAD_1604 galactoside symporter YP_002323769.1 PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: bad:BAD_1279 IS3 family transposase YP_002323770.1 PFAM: glycoside hydrolase, family 42, domain 5, loop region; glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; KEGG: blo:BL0978 beta-galactosidase YP_002323771.1 KEGG: bha:BH0842 hypothetical protein YP_002323772.1 KEGG: pgi:PG1750 alpha-1,3/4-fucosidase YP_002323773.1 PFAM: RbsD or FucU transport; KEGG: cpf:CPF_1050 fucose operon protein FucU YP_002323774.1 PFAM: dihydrodipicolinate synthetase; KEGG: chy:CHY_1320 dihydrodipicolinate synthase YP_002323775.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: cff:CFF8240_1065 short chain dehydrogenase YP_002323776.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: aau:AAur_3801 mandelate racemase/muconate lactonizing enzyme YP_002323777.1 PFAM: protein of unknown function DUF624; KEGG: bad:BAD_1327 hypothetical protein YP_002323778.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1328 sugar ABC transporter permease YP_002323779.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1329 polysaccharide ABC transporter permease YP_002323780.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bad:BAD_1330 ABC transporter YP_002323781.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1328 sugar ABC transporter permease YP_002323782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1329 polysaccharide ABC transporter permease YP_002323783.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bad:BAD_1330 ABC transporter YP_002323784.1 PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: cgb:cg1756 secreted sialidase YP_002323785.1 PFAM: dihydrodipicolinate synthetase; KEGG: pac:PPA1998 dihydrodipicolinate synthase YP_002323786.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bad:BAD_1330 ABC transporter YP_002323787.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bad:BAD_1330 ABC transporter YP_002323788.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bad:BAD_1330 ABC transporter YP_002323790.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bad:BAD_1330 ABC transporter YP_002323791.1 PFAM: glycoside hydrolase, family 20; KEGG: blo:BL0056 possible beta-hexosaminidase A YP_002323792.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cgb:cg1653 phosphoglycolate phosphatase YP_002323793.1 PFAM: extracellular solute-binding protein, family 1; KEGG: efa:EF2903 ABC transporter, substrate-binding protein YP_002323794.1 PFAM: beta-lactamase domain protein; KEGG: lac:LBA1642 hypothetical protein YP_002323795.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2905 ABC transporter, permease protein YP_002323796.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2906 ABC transporter, permease protein YP_002323797.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: lga:LGAS_1642 ABC-type sugar transport system, ATPase component YP_002323798.1 PFAM: protein of unknown function DUF1706; KEGG: sak:SAK_0719 hypothetical protein YP_002323799.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002323800.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_002323801.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sth:STH2179 glycerol-3-phosphate ABC transporter substarate-binding protein YP_002323802.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sth:STH2180 glycerol-3-phosphate ABC transporter permease protein YP_002323803.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bca:BCE_0630 glycerol-3-phosphate ABC transporter, permease protein YP_002323804.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: blo:BL1252 possible phosphodiesterase YP_002323805.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: blo:BL1251 probable glutamyl-tRNA synthetase YP_002323806.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: blo:BL1250 protease of ClpA/ClpB type YP_002323807.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tde:TDE2487 acetyltransferase, GNAT family YP_002323808.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: blo:BL1247 possible 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase in the fumarylacetoacetate hydrolase family YP_002323809.1 PFAM: UDP-galactopyranose mutase; KEGG: blo:BL1245 probable UDP-galactopyranose mutase YP_002323810.1 KEGG: blo:BL1333 narrowly conserved hypothetical protein YP_002323811.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL1332 probable sugar permease of ABC transporter system YP_002323812.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL1331 probable sugar permease of ABC transporter system YP_002323813.1 PFAM: extracellular solute-binding protein, family 1; KEGG: blo:BL1330 probable solute-binding protein of ABC transporter system YP_002323814.1 PFAM: glycosyl transferase, family 2; KEGG: blo:BL0205 possible glycosyltransferase YP_002323815.1 KEGG: rpr:RP338 hypothetical protein YP_002323816.1 KEGG: blo:BL0206 hypothetical membrane protein with unknown function YP_002323817.1 KEGG: lme:LEUM_1399 hypothetical protein YP_002323818.1 PFAM: glycosyl transferase, family 2; glycosyl transferase, family 8; KEGG: llc:LACR_0994 lipopolysaccharide biosynthesis glycosyltransferase YP_002323819.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0207 protein possibly involved in ATP-driven polysaccharide export YP_002323820.1 PFAM: ABC-2 type transporter; KEGG: bad:BAD_1501 possible permease protein of ABC transporter system for export of polysaccharide YP_002323821.1 PFAM: glycosyl transferase, family 8; KEGG: llc:LACR_0994 lipopolysaccharide biosynthesis glycosyltransferase YP_002323822.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: spd:SPD_0326 UDP-glucose 6-dehydrogenase YP_002323823.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: bad:BAD_1495 dTDP-glucose 4,6-dehydratase enzyme involved in rhamnose biosynthesis YP_002323824.1 PFAM: acyltransferase 3; KEGG: blo:BL0200 hypothetical protein YP_002323825.1 KEGG: blo:BL0199 hypothetical protein YP_002323826.1 PFAM: protein of unknown function DUF214; KEGG: blo:BL0198 hypothetical membrane protein with unknown function YP_002323827.1 PFAM: ABC transporter; KEGG: blo:BL0197 possible ATP binding protein of ABC transporter YP_002323828.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: blo:BL0196 hypothetical protein YP_002323829.1 KEGG: blo:BL0195 hypothetical protein with possible glutamine amidotransferase domain YP_002323830.1 PFAM: K+ potassium transporter; KEGG: blo:BL0194 kup system potassium uptake protein YP_002323831.1 PFAM: TatD-related deoxyribonuclease; KEGG: blo:BL0193 deoxyribonuclease YP_002323832.1 KEGG: bad:BAD_1532 lipase YP_002323833.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: art:Arth_3999 sugar transporter YP_002323834.1 PFAM: ROK family protein; KEGG: art:Arth_0183 ROK family protein YP_002323835.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_002323836.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: smu:SMU.983 transcriptional regulator YP_002323837.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: bad:BAD_1392 bacterial regulatory protein YP_002323838.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: blo:BL0192 narrowly conserved hypothetical protein YP_002323839.1 PFAM: ABC transporter, transmembrane region; ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0180 probable permease protein of ABC transporter system YP_002323840.1 PFAM: ABC transporter, transmembrane region; ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0179 probable permease protein of ABC transporter system YP_002323841.1 PFAM: DUF234 DEXX-box ATPase; ATPase; KEGG: ldb:Ldb1503 hypothetical protein YP_002323842.1 KEGG: blo:BL0619 hypothetical protein YP_002323843.1 PFAM: glycoside hydrolase, family 43; KEGG: sma:SAV6381 endo-1,4-beta-xylanase YP_002323844.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1403 multiple sugar-binding transport system permease YP_002323845.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bad:BAD_1404 ABC-type sugar transport systems, permease components YP_002323846.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bad:BAD_1405 periplasmic binding (signal peptide) ABC transporter protein YP_002323847.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: blo:BL0176 probable LacI-type transcriptional regulator YP_002323848.1 PFAM: glycoside hydrolase, family 42, N-terminal domain protein; Beta-galactosidase trimerisation domain protein; KEGG: bha:BH3701 beta-galactosidase YP_002323849.1 KEGG: conserved hypothetical protein, ATPase YP_002323850.1 PFAM: major facilitator superfamily MFS_1; KEGG: bad:BAD_0219 hypothetical protein YP_002323851.1 PFAM: extracellular solute-binding protein, family 5; KEGG: aau:AAur_3875 ABC-type dipeptide/oligopeptide transport system YP_002323852.1 KEGG: art:Arth_4015 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_002323853.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV3046 peptide ABC transporter permease protein YP_002323854.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_3878 ABC-type dipeptide/oligopeptide transport systems, permease components YP_002323855.1 PFAM: peptidase C1B, bleomycin hydrolase; KEGG: blo:BL0173 aminopeptidase C YP_002323856.1 KEGG: blo:BL0172 hypothetical protein with similarity to family of proteins in M. tuberculosis YP_002323858.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002323859.1 KEGG: blo:BL0169 hypothetical protein YP_002323860.1 KEGG: blo:BL0168 hypothetical protein YP_002323861.1 KEGG: blo:BL0167 hypothetical protein YP_002323862.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: blo:BL0166 conserved hypothetical protein with tetrapyrole methylase domain YP_002323863.1 KEGG: cjk:jk1382 transposase for IS3509a YP_002323864.1 KEGG: blo:BL0164 hypothetical protein related to thiamine biosynthesis lipoprotein ApbE YP_002323865.1 PFAM: ABC transporter, transmembrane region; ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0163 probable permease protein of ABC transporter system YP_002323866.1 PFAM: ABC transporter, transmembrane region; ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0162 probable permease protein of ABC transporter system YP_002323867.1 PFAM: regulatory protein, MarR; KEGG: blo:BL0160 possible MarR-type transcriptional regulator YP_002323868.1 PFAM: amino acid permease-associated region; KEGG: blo:BL0156 amino acid permease YP_002323869.1 PFAM: protein of unknown function DUF214; KEGG: blo:BL0155 large transmembrane protein possibly involved in transport YP_002323870.1 PFAM: ABC transporter; SMART: AAA ATPase; KEGG: blo:BL0154 ATP binding protein of ABC transporter YP_002323871.1 PFAM: amino acid permease-associated region; KEGG: blo:BL0152 aromatic amino acid transport protein AroP YP_002323872.1 KEGG: blo:BL0145 hypothetical protein YP_002323873.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL0144 permease of ABC transporter possibly for oligosaccharides YP_002323874.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL0143 permease of ABC transporter possibly for oligosaccharides YP_002323875.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: blo:BL0142 LacI-type transcriptional regulator YP_002323876.1 PFAM: extracellular solute-binding protein, family 1; KEGG: blo:BL0141 possible solute binding protein of ABC transporter YP_002323877.1 PFAM: Phosphoglycerate mutase; KEGG: blo:BL0140 hypothetical protein in PgaM phosphoglycerate mutase family YP_002323879.1 PFAM: nitroreductase; KEGG: blo:BL0139 possible NADPH-flavin oxidoreductase; flavin reductase P; NADPH-Fmn oxidoreductase YP_002323880.1 PFAM: ABC-2 type transporter; KEGG: blo:BL0138 hypothetical protein with similarity to pip phage infection protein of L. lactis YP_002323881.1 PFAM: ABC-2 type transporter; KEGG: blo:BL0137 hypothetical protein with similarity to pip phage infection protein of L. lactis YP_002323883.1 PFAM: Silent information regulator protein Sir2; KEGG: blo:BL1528 Sir2-type regulatory protein YP_002323884.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_002323885.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: blo:BL1526 oligo-1,6-glucosidase YP_002323887.1 KEGG: blo:BL1524 hypothetical protein YP_002323888.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL1523 sugar permease of ABC transporter system YP_002323889.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: blo:BL1522 sugar permease of ABC transporter system YP_002323890.1 PFAM: extracellular solute-binding protein, family 1; KEGG: blo:BL1521 sugar binding protein of ABC transporter system YP_002323891.1 PFAM: ROK family protein; KEGG: blo:BL1520 possible NagC/XylR-type transcriptional regulator YP_002323892.1 PFAM: glycoside hydrolase, clan GH-D; KEGG: blo:BL1518 alpha-galactosidase YP_002323893.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: blo:BL1517 possible cytidine and deoxycytidylate deaminase YP_002323894.1 PFAM: sodium/hydrogen exchanger; KEGG: blo:BL1516 probable NhaP-type Na(+)/H(+) exchanger YP_002323895.1 PFAM: phospholipase/Carboxylesterase; KEGG: blo:BL1514 possible phospholipase/carboxylesterase YP_002323896.1 KEGG: blo:BL1513 hypothetical protein YP_002323897.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_002323898.1 PFAM: sugar-binding domain protein; KEGG: blo:BL1511 hypothetical protein YP_002323899.1 PFAM: sodium:dicarboxylate symporter; KEGG: cpr:CPR_1019 sodium:dicarboxylate symporter family protein YP_002323900.1 KEGG: efa:EF0114 glycosyl hydrolase, family 20 YP_002323901.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: blo:BL0683 cation-transporting ATPase PacL YP_002323902.1 KEGG: ppe:PEPE_1816 N-acetylglucosamine and glucose PTS, EIICBA; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease, EIIA 1 domain YP_002323903.1 TIGRFAM: PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS, EIIB protein; phosphotransferase system, EIIC; KEGG: fnu:FN1547 PTS permease for N-acetylglucosamine and glucose YP_002323904.1 PFAM: major facilitator superfamily MFS_1; KEGG: blo:BL0681 conserved hypothetical transport protein YP_002323905.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: bad:BAD_1591 tRNA/rRNA methyltransferase protein YP_002323906.1 KEGG: blo:BL0679 narrowly conserved hypothetical protein YP_002323907.1 PFAM: ABC transporter; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: blo:BL0673 ATP binding protein of ABC transporter for sugars YP_002323908.1 PFAM: glycosyl transferase, family 2; KEGG: blo:BL0672 probable glycosyltransferase YP_002323909.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_002323910.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002323911.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF YP_002323912.1 PFAM: glutaredoxin; glutaredoxin 2; KEGG: blo:BL0668 glutaredoxin-like protein NrdH YP_002323913.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: blo:BL0660 widely conserved protein with eukaryotic protein kinase domain YP_002323914.1 KEGG: blo:BL0659 hypothetical protein YP_002323915.1 PFAM: protein of unknown function DUF348; G5 domain protein; KEGG: blo:BL0658 narrowly conserved hypothetical protein YP_002323916.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002323917.1 PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: blo:BL0656 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Cmk; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase YP_002323918.1 KEGG: blo:BL0655 hypothetical protein YP_002323919.1 KEGG: blo:BL0654 probable RNA nucleotidyltransferase; TIGRFAM: metal dependent phophohydrolase; HDIG domain protein; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain YP_002323920.1 PFAM: NUDIX hydrolase; KEGG: blo:BL0653 hypothetical protein with possible C-terminal pyrophosphate-releasing NTPase domain YP_002323921.1 KEGG: blo:BL0652 hypothetical protein YP_002323922.1 PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: blo:BL0650 hypothetical protein YP_002323923.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: blo:BL0649 thioredoxin reductase YP_002323924.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: blo:BL0648 probable chromosome partitioning protein YP_002323925.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: blo:BL0647 chromosome partitioning protein ParA YP_002323926.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002323927.1 PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: blo:BL0645 narrowly conserved hypothetical protein with possible ssDNA binding domain YP_002323928.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: blo:BL0644 conserved hypothetical transmembrane protein in the 60 kDa inner membrane protein family YP_002323929.1 PFAM: protein of unknown function DUF37; KEGG: blo:BL0643 widely conserved hypothetical protein with duf37 YP_002323930.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: blo:BL0642a ribonuclease P protein component