-- dump date 20140619_003510 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_784539.1 187476515 6264455 1..1914 1 NC_010645.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1914 gidA 6264455 gidA Bordetella avium 197N tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_784539.1 1 D 360910 CDS YP_784540.1 187476516 6267068 1911..2585 1 NC_010645.1 glucose inhibited division protein B 2585 gidB 6267068 gidB Bordetella avium 197N glucose inhibited division protein B YP_784540.1 1911 D 360910 CDS YP_784541.1 187476517 6267069 2582..3379 1 NC_010645.1 chromosome partitioning protein 3379 parA 6267069 parA Bordetella avium 197N chromosome partitioning protein YP_784541.1 2582 D 360910 CDS YP_784542.1 187476518 6267484 3448..4353 1 NC_010645.1 chromosome partitioning protein 4353 parB 6267484 parB Bordetella avium 197N chromosome partitioning protein YP_784542.1 3448 D 360910 CDS YP_784543.1 187476519 6267485 4346..5353 1 NC_010645.1 L-asparaginase II 5353 ansB 6267485 ansB Bordetella avium 197N L-asparaginase II YP_784543.1 4346 D 360910 CDS YP_784544.1 187476520 6267885 5849..7039 1 NC_010645.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 7039 tuf 6267885 tuf Bordetella avium 197N elongation factor Tu YP_784544.1 5849 D 360910 CDS YP_784545.1 187476521 6267887 7330..7710 1 NC_010645.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 7710 secE 6267887 secE Bordetella avium 197N preprotein translocase subunit SecE YP_784545.1 7330 D 360910 CDS YP_784546.1 187476522 6267573 7719..8252 1 NC_010645.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 8252 nusG 6267573 nusG Bordetella avium 197N transcription antitermination protein NusG YP_784546.1 7719 D 360910 CDS YP_784547.1 187476523 6267450 8309..8740 1 NC_010645.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 8740 rplK 6267450 rplK Bordetella avium 197N 50S ribosomal protein L11 YP_784547.1 8309 D 360910 CDS YP_784548.1 187476524 6267637 8743..9438 1 NC_010645.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 9438 rplA 6267637 rplA Bordetella avium 197N 50S ribosomal protein L1 YP_784548.1 8743 D 360910 CDS YP_784549.1 187476525 6267674 <9682..10206 1 NC_010645.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 10206 rplJ 6267674 rplJ Bordetella avium 197N 50S ribosomal protein L10 YP_784549.1 <9682 D 360910 CDS YP_784550.1 187476526 6267681 10291..10671 1 NC_010645.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 10671 rplL 6267681 rplL Bordetella avium 197N 50S ribosomal protein L7/L12 YP_784550.1 10291 D 360910 CDS YP_784551.1 187476527 6267682 10808..14944 1 NC_010645.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 14944 rpoB 6267682 rpoB Bordetella avium 197N DNA-directed RNA polymerase subunit beta YP_784551.1 10808 D 360910 CDS YP_784552.1 187476528 6267116 14944..19185 1 NC_010645.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 19185 rpoC 6267116 rpoC Bordetella avium 197N DNA-directed RNA polymerase subunit beta' YP_784552.1 14944 D 360910 CDS YP_784553.1 187476529 6267706 20028..21122 1 NC_010645.1 Weakly similar to Chromobacterium violaceum serine/threonine kinase SWALL:Q7NRD4 (EMBL:AE016923); membrane protein 21122 6267706 BAV0015 Bordetella avium 197N membrane protein YP_784553.1 20028 D 360910 CDS YP_784554.1 187476530 6264456 complement(21129..23432) 1 NC_010645.1 two-component sensor protein 23432 6264456 BAV0016 Bordetella avium 197N two-component sensor protein YP_784554.1 21129 R 360910 CDS YP_784555.1 187476531 6264457 complement(23444..24547) 1 NC_010645.1 peptidoglycan binding protein 24547 6264457 BAV0017 Bordetella avium 197N peptidoglycan binding protein YP_784555.1 23444 R 360910 CDS YP_784556.1 187476532 6264458 complement(24586..25305) 1 NC_010645.1 two-component response regulator 25305 6264458 BAV0018 Bordetella avium 197N two-component response regulator YP_784556.1 24586 R 360910 CDS YP_784557.1 187476533 6264459 25555..26268 1 NC_010645.1 Two-component response regulator 26268 6264459 BAV0019 Bordetella avium 197N Two-component response regulator YP_784557.1 25555 D 360910 CDS YP_784558.1 187476534 6264460 26703..27080 1 NC_010645.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 27080 rpsL 6264460 rpsL Bordetella avium 197N 30S ribosomal protein S12 YP_784558.1 26703 D 360910 CDS YP_784559.1 187476535 6267719 27249..27719 1 NC_010645.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 27719 rpsG 6267719 rpsG Bordetella avium 197N 30S ribosomal protein S7 YP_784559.1 27249 D 360910 CDS YP_784560.1 187476536 6267715 27738..29840 1 NC_010645.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 29840 far1 6267715 far1 Bordetella avium 197N elongation factor G YP_784560.1 27738 D 360910 CDS YP_784561.1 187476537 6266954 29917..31107 1 NC_010645.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 31107 tuf 6266954 tuf Bordetella avium 197N elongation factor Tu YP_784561.1 29917 D 360910 CDS YP_784562.1 187476538 6267904 31171..31482 1 NC_010645.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 31482 rpsJ 6267904 rpsJ Bordetella avium 197N 30S ribosomal protein S10 YP_784562.1 31171 D 360910 CDS YP_784563.1 187476539 6267449 31950..32651 1 NC_010645.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 32651 rplC 6267449 rplC Bordetella avium 197N 50S ribosomal protein L3 YP_784563.1 31950 D 360910 CDS YP_784564.1 187476540 6267676 32656..33273 1 NC_010645.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 33273 rplD 6267676 rplD Bordetella avium 197N 50S ribosomal protein L4 YP_784564.1 32656 D 360910 CDS YP_784565.1 187476541 6267677 33270..33566 1 NC_010645.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 33566 rplW 6267677 rplW Bordetella avium 197N 50S ribosomal protein L23 YP_784565.1 33270 D 360910 CDS YP_784566.1 187476542 6267693 33567..34394 1 NC_010645.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 34394 rplB 6267693 rplB Bordetella avium 197N 50S ribosomal protein L2 YP_784566.1 33567 D 360910 CDS YP_784567.1 187476543 6267675 34407..34682 1 NC_010645.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 34682 rpsS 6267675 rpsS Bordetella avium 197N 30S ribosomal protein S19 YP_784567.1 34407 D 360910 CDS YP_784568.1 187476544 6267726 34686..35015 1 NC_010645.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 35015 rplV 6267726 rplV Bordetella avium 197N 50S ribosomal protein L22 YP_784568.1 34686 D 360910 CDS YP_784569.1 187476545 6267692 35025..35819 1 NC_010645.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 35819 rpsC 6267692 rpsC Bordetella avium 197N 30S ribosomal protein S3 YP_784569.1 35025 D 360910 CDS YP_784570.1 187476546 6267712 35822..36238 1 NC_010645.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 36238 rplP 6267712 rplP Bordetella avium 197N 50S ribosomal protein L16 YP_784570.1 35822 D 360910 CDS YP_784571.1 187476547 6267686 36250..36441 1 NC_010645.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 36441 rpmC 6267686 rpmC Bordetella avium 197N 50S ribosomal protein L29 YP_784571.1 36250 D 360910 CDS YP_784572.1 187476548 6267698 36444..36725 1 NC_010645.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 36725 rpsQ 6267698 rpsQ Bordetella avium 197N 30S ribosomal protein S17 YP_784572.1 36444 D 360910 CDS YP_784573.1 187476549 6267724 37375..37959 1 NC_010645.1 Weakly similar to Rhodococcus globerulus biphenyl-2,3-diol 1,2-dioxygenase ii bphc2 SWALL:BHC2_RHOGO (SWALL:P47232); dioxygenase 37959 6267724 BAV0035 Bordetella avium 197N dioxygenase YP_784573.1 37375 D 360910 CDS YP_784574.1 187476550 6264461 38013..38861 1 NC_010645.1 dioxygenase 38861 6264461 BAV0036 Bordetella avium 197N dioxygenase YP_784574.1 38013 D 360910 CDS YP_784575.1 187476551 6264462 38942..39931 1 NC_010645.1 hypothetical protein 39931 6264462 BAV0037 Bordetella avium 197N hypothetical protein YP_784575.1 38942 D 360910 CDS YP_784576.1 187476552 6264463 39939..40496 1 NC_010645.1 reductase 40496 6264463 BAV0038 Bordetella avium 197N reductase YP_784576.1 39939 D 360910 CDS YP_784577.1 187476553 6264464 40518..41507 1 NC_010645.1 hypothetical protein 41507 6264464 BAV0039 Bordetella avium 197N hypothetical protein YP_784577.1 40518 D 360910 CDS YP_784578.1 187476554 6264465 41592..42320 1 NC_010645.1 short-chain dehydrogenase/reductase 42320 6264465 BAV0040 Bordetella avium 197N short-chain dehydrogenase/reductase YP_784578.1 41592 D 360910 CDS YP_784579.1 187476555 6264466 <42353..43150 1 NC_010645.1 IclR family transcriptional regulator 43150 6264466 BAV0041 Bordetella avium 197N IclR family transcriptional regulator YP_784579.1 <42353 D 360910 CDS YP_784580.1 187476556 6264467 complement(43486..44913) 1 NC_010645.1 aldehyde dehydrogenase 44913 6264467 BAV0042 Bordetella avium 197N aldehyde dehydrogenase YP_784580.1 43486 R 360910 CDS YP_784581.1 187476557 6264468 <45218..45973 1 NC_010645.1 asparaginyl beta-hydroxylase 45973 6264468 BAV0043 Bordetella avium 197N asparaginyl beta-hydroxylase YP_784581.1 <45218 D 360910 CDS YP_784582.1 187476558 6264469 46388..46756 1 NC_010645.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 46756 rplN 6264469 rplN Bordetella avium 197N 50S ribosomal protein L14 YP_784582.1 46388 D 360910 CDS YP_784583.1 187476559 6267684 46767..47087 1 NC_010645.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 47087 rplX 6267684 rplX Bordetella avium 197N 50S ribosomal protein L24 YP_784583.1 46767 D 360910 CDS YP_784584.1 187476560 6267694 47100..47639 1 NC_010645.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 47639 rplE 6267694 rplE Bordetella avium 197N 50S ribosomal protein L5 YP_784584.1 47100 D 360910 CDS YP_784585.1 187476561 6267678 <47649..47954 1 NC_010645.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 47954 rpsN 6267678 rpsN Bordetella avium 197N 30S ribosomal protein S14 YP_784585.1 <47649 D 360910 CDS YP_784586.1 187476562 6267721 47965..48360 1 NC_010645.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 48360 rpsH 6267721 rpsH Bordetella avium 197N 30S ribosomal protein S8 YP_784586.1 47965 D 360910 CDS YP_784587.1 187476563 6267716 48371..48904 1 NC_010645.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 48904 rplF 6267716 rplF Bordetella avium 197N 50S ribosomal protein L6 YP_784587.1 48371 D 360910 CDS YP_784588.1 187476564 6267679 48923..49288 1 NC_010645.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 49288 rplR 6267679 rplR Bordetella avium 197N 50S ribosomal protein L18 YP_784588.1 48923 D 360910 CDS YP_784589.1 187476565 6267688 49304..49825 1 NC_010645.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 49825 rpsE 6267688 rpsE Bordetella avium 197N 30S ribosomal protein S5 YP_784589.1 49304 D 360910 CDS YP_784590.1 187476566 6267713 49829..50014 1 NC_010645.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 50014 rpmD 6267713 rpmD Bordetella avium 197N 50S ribosomal protein L30 YP_784590.1 49829 D 360910 CDS YP_784591.1 187476567 6267699 50024..50464 1 NC_010645.1 late assembly protein; 50S ribosomal protein L15 50464 rplO 6267699 rplO Bordetella avium 197N 50S ribosomal protein L15 YP_784591.1 50024 D 360910 CDS YP_784592.1 187476568 6267685 <50479..51804 1 NC_010645.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 51804 secY 6267685 secY Bordetella avium 197N preprotein translocase subunit SecY YP_784592.1 <50479 D 360910 CDS YP_784593.1 187476569 6267572 51814..52032 1 NC_010645.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 52032 infA 6267572 infA Bordetella avium 197N translation initiation factor IF-1 YP_784593.1 51814 D 360910 CDS YP_784594.1 187476570 6267244 52068..52181 1 NC_010645.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 52181 rpmJ 6267244 rpmJ Bordetella avium 197N 50S ribosomal protein L36 YP_784594.1 52068 D 360910 CDS YP_784595.1 187476571 6267704 52224..52589 1 NC_010645.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 52589 rpsM 6267704 rpsM Bordetella avium 197N 30S ribosomal protein S13 YP_784595.1 52224 D 360910 CDS YP_784596.1 187476572 6267720 52605..53006 1 NC_010645.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 53006 rpsK 6267720 rpsK Bordetella avium 197N 30S ribosomal protein S11 YP_784596.1 52605 D 360910 CDS YP_784597.1 187476573 6267718 53018..53641 1 NC_010645.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 53641 rpsD 6267718 rpsD Bordetella avium 197N 30S ribosomal protein S4 YP_784597.1 53018 D 360910 CDS YP_784598.1 187476574 6267622 53814..54800 1 NC_010645.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 54800 rpoA 6267622 rpoA Bordetella avium 197N DNA-directed RNA polymerase subunit alpha YP_784598.1 53814 D 360910 CDS YP_784599.1 187476575 6267705 54963..55358 1 NC_010645.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 55358 rplQ 6267705 rplQ Bordetella avium 197N 50S ribosomal protein L17 YP_784599.1 54963 D 360910 CDS YP_784600.1 187476576 6267687 complement(55406..55840) 1 NC_010645.1 histidine triad protein 55840 6267687 BAV0062 Bordetella avium 197N histidine triad protein YP_784600.1 55406 R 360910 CDS YP_784601.1 187476577 6264470 55931..56266 1 NC_010645.1 periplasmic divalent cation tolerance protein 56266 cutA 6264470 cutA Bordetella avium 197N periplasmic divalent cation tolerance protein YP_784601.1 55931 D 360910 CDS YP_784602.1 187476578 6266820 56278..58167 1 NC_010645.1 thiol:disulfide interchange protein 58167 6266820 BAV0064 Bordetella avium 197N thiol:disulfide interchange protein YP_784602.1 56278 D 360910 CDS YP_784603.1 187476579 6264471 complement(58249..59265) 1 NC_010645.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 59265 hemB 6264471 hemB Bordetella avium 197N delta-aminolevulinic acid dehydratase YP_784603.1 58249 R 360910 CDS YP_784604.1 187476580 6267151 complement(59262..>59885) 1 NC_010645.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC >59885 engB 6267151 engB Bordetella avium 197N ribosome biogenesis GTP-binding protein YsxC YP_784604.1 59262 R 360910 CDS YP_784605.1 187476581 6266923 60069..60743 1 NC_010645.1 cytochrome C 60743 6266923 BAV0067 Bordetella avium 197N cytochrome C YP_784605.1 60069 D 360910 CDS YP_784606.1 187476582 6264472 60826..62907 1 NC_010645.1 C-type cytochrome bigenesis protein 62907 6264472 BAV0068 Bordetella avium 197N C-type cytochrome bigenesis protein YP_784606.1 60826 D 360910 CDS YP_784607.1 187476583 6264473 62904..64232 1 NC_010645.1 cytochrome c biogenesis protein 64232 6264473 BAV0069 Bordetella avium 197N cytochrome c biogenesis protein YP_784607.1 62904 D 360910 CDS YP_784608.1 187476584 6264474 complement(64273..65562) 1 NC_010645.1 diaminopimelate decarboxylase 65562 lysA 6264474 lysA Bordetella avium 197N diaminopimelate decarboxylase YP_784608.1 64273 R 360910 CDS YP_784609.1 187476585 6267317 65785..66114 1 NC_010645.1 hypothetical protein 66114 cyaY 6267317 cyaY Bordetella avium 197N hypothetical protein YP_784609.1 65785 D 360910 CDS YP_784610.1 187476586 6266827 complement(66125..68569) 1 NC_010645.1 penicillin-binding protein 1A 68569 6266827 BAV0072 Bordetella avium 197N penicillin-binding protein 1A YP_784610.1 66125 R 360910 CDS YP_784611.1 187476587 6264475 68684..69313 1 NC_010645.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 69313 aroK 6264475 aroK Bordetella avium 197N shikimate kinase YP_784611.1 68684 D 360910 CDS YP_784612.1 187476588 6266660 69310..70392 1 NC_010645.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 70392 aroB 6266660 aroB Bordetella avium 197N 3-dehydroquinate synthase YP_784612.1 69310 D 360910 CDS YP_784613.1 187476589 6266655 <70412..71545 1 NC_010645.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 71545 6266655 BAV0075 Bordetella avium 197N deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_784613.1 <70412 D 360910 CDS YP_784614.1 187476590 6264476 complement(71689..72762) 1 NC_010645.1 transcriptional regulator 72762 6264476 BAV0076 Bordetella avium 197N transcriptional regulator YP_784614.1 71689 R 360910 CDS YP_784615.1 187476591 6264477 complement(72890..73549) 1 NC_010645.1 glutathione S-transferase 73549 6264477 BAV0077 Bordetella avium 197N glutathione S-transferase YP_784615.1 72890 R 360910 CDS YP_784616.1 187476592 6264478 complement(73573..76431) 1 NC_010645.1 excinuclease ABC subunit A 76431 uvrA 6264478 uvrA Bordetella avium 197N excinuclease ABC subunit A YP_784616.1 73573 R 360910 CDS YP_784617.1 187476593 6267922 76612..77790 1 NC_010645.1 MFS family transporter 77790 6267922 BAV0079 Bordetella avium 197N MFS family transporter YP_784617.1 76612 D 360910 CDS YP_784618.1 187476594 6264479 78045..78545 1 NC_010645.1 single-strand binding protein 78545 ssb 6264479 ssb Bordetella avium 197N single-strand binding protein YP_784618.1 78045 D 360910 CDS YP_784619.1 187476595 6267772 78771..80240 1 NC_010645.1 O-antigen translocase 80240 6267772 BAV0081 Bordetella avium 197N O-antigen translocase YP_784619.1 78771 D 360910 CDS YP_784620.1 187476596 6264480 <80356..81672 1 NC_010645.1 lipopolysaccharide biosynthesis protein 81672 6264480 BAV0082 Bordetella avium 197N lipopolysaccharide biosynthesis protein YP_784620.1 <80356 D 360910 CDS YP_784621.1 187476597 6264481 81669..82697 1 NC_010645.1 lipopolysaccharide biosynthesis protein 82697 6264481 BAV0083 Bordetella avium 197N lipopolysaccharide biosynthesis protein YP_784621.1 81669 D 360910 CDS YP_784622.1 187476598 6264482 82707..84026 1 NC_010645.1 lipopolysaccharide biosynthesis protein 84026 6264482 BAV0084 Bordetella avium 197N lipopolysaccharide biosynthesis protein YP_784622.1 82707 D 360910 CDS YP_784623.1 187476600 6264483 84023..84634 1 NC_010645.1 lipopolysaccharide biosynthesis protein 84634 6264483 BAV0085 Bordetella avium 197N lipopolysaccharide biosynthesis protein YP_784623.1 84023 D 360910 CDS YP_784624.1 187476601 6264484 84883..85833 1 NC_010645.1 glycosyl transferase 85833 6264484 BAV0086 Bordetella avium 197N glycosyl transferase YP_784624.1 84883 D 360910 CDS YP_784625.1 187476602 6264485 85913..87856 1 NC_010645.1 lipopolysaccharide biosynthesis protein 87856 6264485 BAV0087 Bordetella avium 197N lipopolysaccharide biosynthesis protein YP_784625.1 85913 D 360910 CDS YP_784626.1 187476603 6264486 87862..88629 1 NC_010645.1 lipopolysaccharide biosynthesis protein 88629 6264486 BAV0088 Bordetella avium 197N lipopolysaccharide biosynthesis protein YP_784626.1 87862 D 360910 CDS YP_784627.1 187476604 6264487 88632..89672 1 NC_010645.1 lipid A biosynthesis protein 89672 6264487 BAV0089 Bordetella avium 197N lipid A biosynthesis protein YP_784627.1 88632 D 360910 CDS YP_784628.1 187476605 6264488 complement(89625..91553) 1 NC_010645.1 sugar epimerase/dehydratase 91553 bplL 6264488 bplL Bordetella avium 197N sugar epimerase/dehydratase YP_784628.1 89625 R 360910 CDS YP_784629.1 187476606 6266738 complement(91619..92977) 1 NC_010645.1 membrane protein 92977 bplJ 6266738 bplJ Bordetella avium 197N membrane protein YP_784629.1 91619 R 360910 CDS YP_784630.1 187476607 6266737 complement(92974..94182) 1 NC_010645.1 glycosyl transferase 94182 bplH 6266737 bplH Bordetella avium 197N glycosyl transferase YP_784630.1 92974 R 360910 CDS YP_784631.1 187476608 6266736 complement(94272..>94871) 1 NC_010645.1 sugar transferase >94871 bplG 6266736 bplG Bordetella avium 197N sugar transferase YP_784631.1 94272 R 360910 CDS YP_784632.1 187476609 6266735 complement(94868..96046) 1 NC_010645.1 lipopolysaccharide biosynthesis protein 96046 bplF 6266735 bplF Bordetella avium 197N lipopolysaccharide biosynthesis protein YP_784632.1 94868 R 360910 CDS YP_784633.1 187476610 6266734 complement(96191..97387) 1 NC_010645.1 glycosyl transferase 97387 bplE 6266734 bplE Bordetella avium 197N glycosyl transferase YP_784633.1 96191 R 360910 CDS YP_784634.1 187476611 6266733 complement(97405..98505) 1 NC_010645.1 lipopolysaccharide biosynthesis protein 98505 bplC 6266733 bplC Bordetella avium 197N lipopolysaccharide biosynthesis protein YP_784634.1 97405 R 360910 CDS YP_784635.1 187476612 6266732 complement(98516..99085) 1 NC_010645.1 acetyltransferase 99085 bplB 6266732 bplB Bordetella avium 197N acetyltransferase YP_784635.1 98516 R 360910 CDS YP_784636.1 187476613 6266731 complement(99093..100139) 1 NC_010645.1 oxidoreductase 100139 bplA 6266731 bplA Bordetella avium 197N oxidoreductase YP_784636.1 99093 R 360910 CDS YP_784637.1 187476614 6266730 100501..101172 1 NC_010645.1 two-component response regulator 101172 6266730 BAV0099 Bordetella avium 197N two-component response regulator YP_784637.1 100501 D 360910 CDS YP_784638.1 187476615 6264489 <101195..103633 1 NC_010645.1 bifunctional protein two-component system sensor protein and solute-binding protein 103633 6264489 BAV0100 Bordetella avium 197N bifunctional protein two-component system sensor protein and solute-binding protein YP_784638.1 <101195 D 360910 CDS YP_784639.1 187476616 6264490 103759..104850 1 NC_010645.1 solute-binding periplasmic component of ABC transporter 104850 6264490 BAV0101 Bordetella avium 197N solute-binding periplasmic component of ABC transporter YP_784639.1 103759 D 360910 CDS YP_784640.1 187476617 6264491 104941..106719 1 NC_010645.1 ABC transporter solute-binding protein 106719 6264491 BAV0102 Bordetella avium 197N ABC transporter solute-binding protein YP_784640.1 104941 D 360910 CDS YP_784641.1 187476618 6264492 106712..107779 1 NC_010645.1 ABC transporter ATP-binding protein 107779 6264492 BAV0103 Bordetella avium 197N ABC transporter ATP-binding protein YP_784641.1 106712 D 360910 CDS YP_784642.1 187476619 6264493 107991..108449 1 NC_010645.1 hypothetical protein 108449 6264493 BAV0104 Bordetella avium 197N hypothetical protein YP_784642.1 107991 D 360910 CDS YP_784643.1 187476620 6264494 complement(108433..110589) 1 NC_010645.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 110589 glcB 6264494 glcB Bordetella avium 197N malate synthase G YP_784643.1 108433 R 360910 CDS YP_784644.1 187476621 6267070 complement(111030..111410) 1 NC_010645.1 Similar to several exported proteins from bordetellae. It appears to be unique to the bordetellae. There are no similarities to protein from other organisms.; hypothetical protein 111410 6267070 BAV0106 Bordetella avium 197N hypothetical protein YP_784644.1 111030 R 360910 CDS YP_784645.1 187476622 6264495 complement(111640..112623) 1 NC_010645.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 112623 ubiA 6264495 ubiA Bordetella avium 197N 4-hydroxybenzoate octaprenyltransferase YP_784645.1 111640 R 360910 CDS YP_784646.1 187476623 6264496 complement(112641..113840) 1 NC_010645.1 aminotransferase 113840 6264496 BAV0108 Bordetella avium 197N aminotransferase YP_784646.1 112641 R 360910 CDS YP_784647.1 187476624 6264497 113981..114469 1 NC_010645.1 hypothetical protein 114469 6264497 BAV0109 Bordetella avium 197N hypothetical protein YP_784647.1 113981 D 360910 CDS YP_784648.1 187476625 6264498 114744..115673 1 NC_010645.1 dihydrodipicolinate synthase 115673 dapA1 6264498 dapA1 Bordetella avium 197N dihydrodipicolinate synthase YP_784648.1 114744 D 360910 CDS YP_784649.1 187476626 6266853 116123..117745 1 NC_010645.1 dehydrogenase 117745 6266853 BAV0111 Bordetella avium 197N dehydrogenase YP_784649.1 116123 D 360910 CDS YP_784650.1 187476627 6264499 117839..119101 1 NC_010645.1 membrane protein 119101 6264499 BAV0112 Bordetella avium 197N membrane protein YP_784650.1 117839 D 360910 CDS YP_784651.1 187476628 6264500 119274..119582 1 NC_010645.1 hypothetical protein 119582 6264500 BAV0113 Bordetella avium 197N hypothetical protein YP_784651.1 119274 D 360910 CDS YP_784652.1 187476629 6264501 <119585..120220 1 NC_010645.1 membrane protein 120220 6264501 BAV0114 Bordetella avium 197N membrane protein YP_784652.1 <119585 D 360910 CDS YP_784653.1 187476630 6264502 120260..122050 1 NC_010645.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 122050 aspS 6264502 aspS Bordetella avium 197N aspartyl-tRNA synthetase YP_784653.1 120260 D 360910 CDS YP_784654.1 187476631 6266672 122153..123013 1 NC_010645.1 endonuclease/exonuclease/phosphatase family protein 123013 6266672 BAV0116 Bordetella avium 197N endonuclease/exonuclease/phosphatase family protein YP_784654.1 122153 D 360910 CDS YP_784655.1 187476632 6264503 <123010..124203 1 NC_010645.1 cardiolipin synthetase 124203 ybhO 6264503 ybhO Bordetella avium 197N cardiolipin synthetase YP_784655.1 <123010 D 360910 CDS YP_784656.1 187476633 6267948 complement(124210..125097) 1 NC_010645.1 membrane protein 125097 6267948 BAV0118 Bordetella avium 197N membrane protein YP_784656.1 124210 R 360910 CDS YP_784657.1 187476634 6264504 complement(125109..126512) 1 NC_010645.1 transporter 126512 6264504 BAV0119 Bordetella avium 197N transporter YP_784657.1 125109 R 360910 CDS YP_784658.1 187476635 6264505 complement(126543..127106) 1 NC_010645.1 carbon monoxide dehydrogenase subunit G 127106 6264505 BAV0120 Bordetella avium 197N carbon monoxide dehydrogenase subunit G YP_784658.1 126543 R 360910 CDS YP_784659.1 187476636 6264506 127293..129035 1 NC_010645.1 Similar to the N-terminus of fhaS in B. bronchiseptica; filamentous surface protein 129035 6264506 BAV0121 Bordetella avium 197N filamentous surface protein YP_784659.1 127293 D 360910 CDS YP_784660.1 187476637 6264507 complement(129071..130333) 1 NC_010645.1 O-antigen polymerase 130333 6264507 BAV0122 Bordetella avium 197N O-antigen polymerase YP_784660.1 129071 R 360910 CDS YP_784661.1 187476638 6264508 130553..131428 1 NC_010645.1 dTDP-4-dehydrorhamnose reductase 131428 rfbD 6264508 rfbD Bordetella avium 197N dTDP-4-dehydrorhamnose reductase YP_784661.1 130553 D 360910 CDS YP_784662.1 187476639 6267645 131458..132030 1 NC_010645.1 dTDP-6-deoxy-D-glucose-3,5-epimerase 132030 rfbC 6267645 rfbC Bordetella avium 197N dTDP-6-deoxy-D-glucose-3,5-epimerase YP_784662.1 131458 D 360910 CDS YP_784663.1 187476640 6267644 132146..133153 1 NC_010645.1 lipopolysaccharide heptosyltransferase-1 133153 rfaC 6267644 rfaC Bordetella avium 197N lipopolysaccharide heptosyltransferase-1 YP_784663.1 132146 D 360910 CDS YP_784664.1 187476641 6267639 133163..134434 1 NC_010645.1 3-deoxy-D-manno-octulosonic-acid transferase 134434 kdtA 6267639 kdtA Bordetella avium 197N 3-deoxy-D-manno-octulosonic-acid transferase YP_784664.1 133163 D 360910 CDS YP_784665.1 187476642 6267273 complement(134431..134607) 1 NC_010645.1 Unique to Bordetellae; hypothetical protein 134607 6267273 BAV0127 Bordetella avium 197N hypothetical protein YP_784665.1 134431 R 360910 CDS YP_784666.1 187476643 6264509 complement(134622..135401) 1 NC_010645.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 135401 baf 6264509 baf Bordetella avium 197N pantothenate kinase YP_784666.1 134622 R 360910 CDS YP_784667.1 187476644 6266688 complement(135398..136225) 1 NC_010645.1 bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase BirA 136225 birA 6266688 birA Bordetella avium 197N bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase BirA YP_784667.1 135398 R 360910 CDS YP_784668.1 187476645 6266719 136315..137448 1 NC_010645.1 membrane protein 137448 6266719 BAV0130 Bordetella avium 197N membrane protein YP_784668.1 136315 D 360910 CDS YP_784669.1 187476646 6264510 137448..138272 1 NC_010645.1 ATP-binding component of ABC transporter 138272 6264510 BAV0131 Bordetella avium 197N ATP-binding component of ABC transporter YP_784669.1 137448 D 360910 CDS YP_784670.1 187476647 6264511 138259..139185 1 NC_010645.1 hypothetical protein 139185 6264511 BAV0132 Bordetella avium 197N hypothetical protein YP_784670.1 138259 D 360910 CDS YP_784671.1 187476648 6264512 139190..139780 1 NC_010645.1 hypothetical protein 139780 6264512 BAV0133 Bordetella avium 197N hypothetical protein YP_784671.1 139190 D 360910 CDS YP_784672.1 187476649 6264513 139813..140460 1 NC_010645.1 hypothetical protein 140460 6264513 BAV0134 Bordetella avium 197N hypothetical protein YP_784672.1 139813 D 360910 CDS YP_784673.1 187476650 6264514 140593..141852 1 NC_010645.1 penicillin-binding protein 141852 dacC 6264514 dacC Bordetella avium 197N penicillin-binding protein YP_784673.1 140593 D 360910 CDS YP_784674.1 187476651 6266846 142004..142870 1 NC_010645.1 D-alanine aminotransferase 142870 dat 6266846 dat Bordetella avium 197N D-alanine aminotransferase YP_784674.1 142004 D 360910 CDS YP_784675.1 187476652 6266862 142922..143194 1 NC_010645.1 hypothetical protein 143194 6266862 BAV0137 Bordetella avium 197N hypothetical protein YP_784675.1 142922 D 360910 CDS YP_784676.1 187476653 6264515 143198..143851 1 NC_010645.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 143851 lipB 6264515 lipB Bordetella avium 197N lipoate-protein ligase B YP_784676.1 143198 D 360910 CDS YP_784677.1 187476654 6267296 143905..144900 1 NC_010645.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 144900 lipA 6267296 lipA Bordetella avium 197N lipoyl synthase YP_784677.1 143905 D 360910 CDS YP_784678.1 187476655 6267295 complement(144961..145524) 1 NC_010645.1 ATP:cob(I)alamin adenosyltransferase 145524 meaD 6267295 meaD Bordetella avium 197N ATP:cob(I)alamin adenosyltransferase YP_784678.1 144961 R 360910 CDS YP_784679.1 187476656 6267332 145647..145952 1 NC_010645.1 hypothetical protein 145952 6267332 BAV0141 Bordetella avium 197N hypothetical protein YP_784679.1 145647 D 360910 CDS YP_784680.1 187476657 6264516 complement(146060..147394) 1 NC_010645.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 147394 hslU 6264516 hslU Bordetella avium 197N ATP-dependent protease ATP-binding subunit HslU YP_784680.1 146060 R 360910 CDS YP_784681.1 187476658 6267214 complement(147421..147960) 1 NC_010645.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 147960 hslV 6267214 hslV Bordetella avium 197N ATP-dependent protease peptidase subunit YP_784681.1 147421 R 360910 CDS YP_784682.1 187476659 6267215 complement(148333..148797) 1 NC_010645.1 dnaK suppressor protein 148797 dksA 6267215 dksA Bordetella avium 197N dnaK suppressor protein YP_784682.1 148333 R 360910 CDS YP_784683.1 187476660 6266882 complement(148916..150013) 1 NC_010645.1 hypothetical protein 150013 6266882 BAV0145 Bordetella avium 197N hypothetical protein YP_784683.1 148916 R 360910 CDS YP_784684.1 187476661 6264517 complement(150354..150845) 1 NC_010645.1 cation uptake regulatory protein 150845 6264517 BAV0146 Bordetella avium 197N cation uptake regulatory protein YP_784684.1 150354 R 360910 CDS YP_784685.1 187476662 6264518 151069..151782 1 NC_010645.1 cation ABC transporter ATP-binding protein 151782 6264518 BAV0147 Bordetella avium 197N cation ABC transporter ATP-binding protein YP_784685.1 151069 D 360910 CDS YP_784686.1 187476663 6264519 151779..152660 1 NC_010645.1 cation ABC transporter membrane protein 152660 6264519 BAV0148 Bordetella avium 197N cation ABC transporter membrane protein YP_784686.1 151779 D 360910 CDS YP_784687.1 187476664 6264520 <152657..153589 1 NC_010645.1 cation ABC transporter substrate-binding protein 153589 6264520 BAV0149 Bordetella avium 197N cation ABC transporter substrate-binding protein YP_784687.1 <152657 D 360910 CDS YP_784688.1 187476665 6264521 <153595..154215 1 NC_010645.1 hypothetical protein 154215 6264521 BAV0150 Bordetella avium 197N hypothetical protein YP_784688.1 <153595 D 360910 CDS YP_784689.1 187476666 6264522 154212..155129 1 NC_010645.1 high-affinity nickel-transport protein 155129 6264522 BAV0151 Bordetella avium 197N high-affinity nickel-transport protein YP_784689.1 154212 D 360910 CDS YP_784690.1 187476667 6264523 155225..157255 1 NC_010645.1 TonB-dependent receptor protein 157255 6264523 BAV0152 Bordetella avium 197N TonB-dependent receptor protein YP_784690.1 155225 D 360910 CDS YP_784691.1 187476668 6264524 complement(157249..158226) 1 NC_010645.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 158226 xerC 6264524 xerC Bordetella avium 197N site-specific tyrosine recombinase XerC YP_784691.1 157249 R 360910 CDS YP_784692.1 187476669 6267943 complement(158226..158900) 1 NC_010645.1 hypothetical protein 158900 6267943 BAV0154 Bordetella avium 197N hypothetical protein YP_784692.1 158226 R 360910 CDS YP_784693.1 187476670 6264525 complement(158933..159829) 1 NC_010645.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 159829 dapF 6264525 dapF Bordetella avium 197N diaminopimelate epimerase YP_784693.1 158933 R 360910 CDS YP_784694.1 187476671 6266860 complement(159868..160761) 1 NC_010645.1 lipid A biosynthesis lauroyl acyltransferase 160761 htrB1 6266860 htrB1 Bordetella avium 197N lipid A biosynthesis lauroyl acyltransferase YP_784694.1 159868 R 360910 CDS YP_784695.1 187476672 6267218 complement(160758..161600) 1 NC_010645.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 161600 htrB2 6267218 htrB2 Bordetella avium 197N lipid A biosynthesis lauroyl acyltransferase YP_784695.1 160758 R 360910 CDS YP_784696.1 187476673 6267219 <161863..163026 1 NC_010645.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 163026 metK 6267219 metK Bordetella avium 197N S-adenosylmethionine synthetase YP_784696.1 <161863 D 360910 CDS YP_784697.1 187476674 6267341 163224..163448 1 NC_010645.1 hypothetical protein 163448 6267341 BAV0159 Bordetella avium 197N hypothetical protein YP_784697.1 163224 D 360910 CDS YP_784698.1 187476675 6264526 163525..164562 1 NC_010645.1 glycosyl transferase 164562 6264526 BAV0160 Bordetella avium 197N glycosyl transferase YP_784698.1 163525 D 360910 CDS YP_784699.1 187476676 6264527 <164810..166231 1 NC_010645.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 166231 acyH 6264527 acyH Bordetella avium 197N S-adenosyl-L-homocysteine hydrolase YP_784699.1 <164810 D 360910 CDS YP_784700.1 187476677 6266596 166292..166627 1 NC_010645.1 membrane protein 166627 6266596 BAV0162 Bordetella avium 197N membrane protein YP_784700.1 166292 D 360910 CDS YP_784701.1 187476678 6264528 166627..167469 1 NC_010645.1 5,10-methylenetetrahydrofolate reductase 167469 metF 6264528 metF Bordetella avium 197N 5,10-methylenetetrahydrofolate reductase YP_784701.1 166627 D 360910 CDS YP_784702.1 187476679 6267337 <167910..168719 1 NC_010645.1 hypothetical protein 168719 6267337 BAV0164 Bordetella avium 197N hypothetical protein YP_784702.1 <167910 D 360910 CDS YP_784703.1 187476680 6264529 <168716..168955 1 NC_010645.1 hypothetical protein 168955 6264529 BAV0165 Bordetella avium 197N hypothetical protein YP_784703.1 <168716 D 360910 CDS YP_784704.1 187476681 6264530 <168942..169391 1 NC_010645.1 membrane protein 169391 6264530 BAV0166 Bordetella avium 197N membrane protein YP_784704.1 <168942 D 360910 CDS YP_784705.1 187476682 6264531 complement(169388..170053) 1 NC_010645.1 5-formyltetrahydrofolate cyclo-ligase 170053 6264531 BAV0167 Bordetella avium 197N 5-formyltetrahydrofolate cyclo-ligase YP_784705.1 169388 R 360910 CDS YP_784706.1 187476683 6264532 170098..172179 1 NC_010645.1 soluble lytic murein transglycosylase 172179 slt 6264532 slt Bordetella avium 197N soluble lytic murein transglycosylase YP_784706.1 170098 D 360910 CDS YP_784707.1 187476684 6267756 172176..173243 1 NC_010645.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 173243 cca 6267756 cca Bordetella avium 197N tRNA CCA-pyrophosphorylase YP_784707.1 172176 D 360910 CDS YP_784708.1 187476685 6266766 complement(173240..>174442) 1 NC_010645.1 hypothetical protein >174442 6266766 BAV0170 Bordetella avium 197N hypothetical protein YP_784708.1 173240 R 360910 CDS YP_784709.1 187476686 6264533 complement(174494..176272) 1 NC_010645.1 ATP-dependent RNA helicase 176272 rhlE 6264533 rhlE Bordetella avium 197N ATP-dependent RNA helicase YP_784709.1 174494 R 360910 CDS YP_784710.1 187476687 6267648 complement(176533..177291) 1 NC_010645.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 177291 ung 6267648 ung Bordetella avium 197N uracil-DNA glycosylase YP_784710.1 176533 R 360910 CDS YP_784711.1 187476688 6267919 complement(177334..178107) 1 NC_010645.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 178107 mtn 6267919 mtn Bordetella avium 197N 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_784711.1 177334 R 360910 CDS YP_784712.1 187476689 6267396 complement(178065..178916) 1 NC_010645.1 LysR family transcriptional regulator 178916 6267396 BAV0174 Bordetella avium 197N LysR family transcriptional regulator YP_784712.1 178065 R 360910 CDS YP_784713.1 187476690 6264534 179025..180500 1 NC_010645.1 MFS transporter 180500 6264534 BAV0175 Bordetella avium 197N MFS transporter YP_784713.1 179025 D 360910 CDS YP_784714.1 187476691 6264535 complement(180677..>181849) 1 NC_010645.1 Na+/H+ antiporter protein >181849 nhaA 6264535 nhaA Bordetella avium 197N Na+/H+ antiporter protein YP_784714.1 180677 R 360910 CDS YP_784715.1 187476692 6267421 complement(182009..182473) 1 NC_010645.1 nucleotide-binding protein 182473 6267421 BAV0177 Bordetella avium 197N nucleotide-binding protein YP_784715.1 182009 R 360910 CDS YP_784716.1 187476693 6264536 complement(182470..182919) 1 NC_010645.1 histone acetyltransferase 182919 6264536 BAV0178 Bordetella avium 197N histone acetyltransferase YP_784716.1 182470 R 360910 CDS YP_784717.1 187476694 6264537 complement(182916..184418) 1 NC_010645.1 hypothetical protein 184418 6264537 BAV0179 Bordetella avium 197N hypothetical protein YP_784717.1 182916 R 360910 CDS YP_784718.1 187476695 6264538 complement(184498..185340) 1 NC_010645.1 metallo-beta-lactamase superfamily protein 185340 6264538 BAV0180 Bordetella avium 197N metallo-beta-lactamase superfamily protein YP_784718.1 184498 R 360910 CDS YP_784719.1 187476696 6264539 complement(185415..186680) 1 NC_010645.1 phenylacetate-coenzyme A ligase 186680 paaK 6264539 paaK Bordetella avium 197N phenylacetate-coenzyme A ligase YP_784719.1 185415 R 360910 CDS YP_784720.1 187476697 6267475 complement(186706..187578) 1 NC_010645.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein 187578 6267475 BAV0182 Bordetella avium 197N high-affinity branched-chain amino acid ABC transporter ATP-binding protein YP_784720.1 186706 R 360910 CDS YP_784721.1 187476698 6264540 complement(187578..188909) 1 NC_010645.1 branched-chain amino acid ABC transporter periplasmic amino acid-binding protein 188909 6264540 BAV0183 Bordetella avium 197N branched-chain amino acid ABC transporter periplasmic amino acid-binding protein YP_784721.1 187578 R 360910 CDS YP_784722.1 187476699 6264541 complement(188975..190039) 1 NC_010645.1 branched-chain amino acid ABC transporter permease 190039 6264541 BAV0184 Bordetella avium 197N branched-chain amino acid ABC transporter permease YP_784722.1 188975 R 360910 CDS YP_784723.1 187476700 6264542 complement(190052..190981) 1 NC_010645.1 branched-chain amino acid transport system permease 190981 6264542 BAV0185 Bordetella avium 197N branched-chain amino acid transport system permease YP_784723.1 190052 R 360910 CDS YP_784724.1 187476701 6264543 complement(190999..191799) 1 NC_010645.1 high-affinity branched-chain amino acid transporter, ATP-binding protein 191799 6264543 BAV0186 Bordetella avium 197N high-affinity branched-chain amino acid transporter, ATP-binding protein YP_784724.1 190999 R 360910 CDS YP_784725.1 187476702 6264544 complement(191802..>193766) 1 NC_010645.1 AMP-binding enzyme >193766 6264544 BAV0187 Bordetella avium 197N AMP-binding enzyme YP_784725.1 191802 R 360910 CDS YP_784726.1 187476703 6264545 193934..194632 1 NC_010645.1 cyclic nucleotide-binding regulatory protein 194632 6264545 BAV0188 Bordetella avium 197N cyclic nucleotide-binding regulatory protein YP_784726.1 193934 D 360910 CDS YP_784727.1 187476704 6264546 complement(194909..195547) 1 NC_010645.1 lysine exporter 195547 6264546 BAV0189 Bordetella avium 197N lysine exporter YP_784727.1 194909 R 360910 CDS YP_784728.1 187476705 6264547 195669..196583 1 NC_010645.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 196583 lysG 6264547 lysG Bordetella avium 197N chromosome replication initiation inhibitor protein YP_784728.1 195669 D 360910 CDS YP_784729.1 187476706 6267318 196871..199096 1 NC_010645.1 transferrin/hemoglobin-binding protein 199096 6267318 BAV0191 Bordetella avium 197N transferrin/hemoglobin-binding protein YP_784729.1 196871 D 360910 CDS YP_784730.1 187476707 6264548 complement(199101..200066) 1 NC_010645.1 hypothetical protein 200066 6264548 BAV0192 Bordetella avium 197N hypothetical protein YP_784730.1 199101 R 360910 CDS YP_784731.1 187476708 6264549 complement(200167..200865) 1 NC_010645.1 hypothetical protein 200865 6264549 BAV0193 Bordetella avium 197N hypothetical protein YP_784731.1 200167 R 360910 CDS YP_784732.1 187476709 6264550 201085..202317 1 NC_010645.1 aminotransferase 202317 6264550 BAV0194 Bordetella avium 197N aminotransferase YP_784732.1 201085 D 360910 CDS YP_784733.1 187476710 6264551 202454..203470 1 NC_010645.1 amino acid-binding periplasmic protein 203470 6264551 BAV0195 Bordetella avium 197N amino acid-binding periplasmic protein YP_784733.1 202454 D 360910 CDS YP_784734.1 187476711 6264552 complement(203549..204004) 1 NC_010645.1 membrane protein 204004 6264552 BAV0196 Bordetella avium 197N membrane protein YP_784734.1 203549 R 360910 CDS YP_784735.1 187476712 6264553 complement(204015..204923) 1 NC_010645.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase 204923 hmgcL 6264553 hmgcL Bordetella avium 197N hydroxymethylglutaryl-CoA lyase YP_784735.1 204015 R 360910 CDS YP_784736.1 187476713 6267185 complement(204963..206084) 1 NC_010645.1 Smf protein 206084 smf 6267185 smf Bordetella avium 197N Smf protein YP_784736.1 204963 R 360910 CDS YP_784737.1 187476714 6267760 complement(206160..206783) 1 NC_010645.1 two-component system response regulator 206783 6267760 BAV0199 Bordetella avium 197N two-component system response regulator YP_784737.1 206160 R 360910 CDS YP_784738.1 187476715 6264554 complement(206954..207445) 1 NC_010645.1 leucine-responsive regulatory protein 207445 alsB 6264554 alsB Bordetella avium 197N leucine-responsive regulatory protein YP_784738.1 206954 R 360910 CDS YP_784739.1 187476599 6266615 207584..208834 1 NC_010645.1 kynureninase 208834 6266615 BAV0201 Bordetella avium 197N kynureninase YP_784739.1 207584 D 360910 CDS YP_784740.1 187476716 6264555 208938..209450 1 NC_010645.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 209450 def 6264555 def Bordetella avium 197N peptide deformylase YP_784740.1 208938 D 360910 CDS YP_784741.1 187476717 6266876 209568..210503 1 NC_010645.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 210503 fmt 6266876 fmt Bordetella avium 197N methionyl-tRNA formyltransferase YP_784741.1 209568 D 360910 CDS YP_784742.1 187476718 6267023 complement(210500..211126) 1 NC_010645.1 pyridoxamine 5'-phosphate oxidase 211126 6267023 BAV0204 Bordetella avium 197N pyridoxamine 5'-phosphate oxidase YP_784742.1 210500 R 360910 CDS YP_784743.1 187476719 6264556 complement(211138..211773) 1 NC_010645.1 phosphatase 211773 6264556 BAV0205 Bordetella avium 197N phosphatase YP_784743.1 211138 R 360910 CDS YP_784744.1 187476720 6264557 complement(211837..212412) 1 NC_010645.1 hypothetical protein 212412 6264557 BAV0206 Bordetella avium 197N hypothetical protein YP_784744.1 211837 R 360910 CDS YP_784745.1 187476721 6264558 complement(212757..213947) 1 NC_010645.1 CoA-transferase family III 213947 6264558 BAV0207 Bordetella avium 197N CoA-transferase family III YP_784745.1 212757 R 360910 CDS YP_784746.1 187476722 6264559 complement(214072..>215400) 1 NC_010645.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase >215400 rimO 6264559 rimO Bordetella avium 197N ribosomal protein S12 methylthiotransferase YP_784746.1 214072 R 360910 CDS YP_784747.1 187476723 6264560 complement(215548..215787) 1 NC_010645.1 DNA-binding protein 215787 6264560 BAV0209 Bordetella avium 197N DNA-binding protein YP_784747.1 215548 R 360910 CDS YP_784748.1 187476724 6264561 216265..217614 1 NC_010645.1 hypothetical protein 217614 6264561 BAV0210 Bordetella avium 197N hypothetical protein YP_784748.1 216265 D 360910 CDS YP_784749.1 187476725 6264562 217611..218381 1 NC_010645.1 IclR family transcriptional regulator 218381 6264562 BAV0211 Bordetella avium 197N IclR family transcriptional regulator YP_784749.1 217611 D 360910 CDS YP_784750.1 187476726 6264563 218522..219271 1 NC_010645.1 short chain dehydrogenase/reductase 219271 6264563 BAV0212 Bordetella avium 197N short chain dehydrogenase/reductase YP_784750.1 218522 D 360910 CDS YP_784751.1 187476727 6264564 219309..220277 1 NC_010645.1 hypothetical protein 220277 6264564 BAV0213 Bordetella avium 197N hypothetical protein YP_784751.1 219309 D 360910 CDS YP_784752.1 187476728 6264565 220291..221130 1 NC_010645.1 hydrolase 221130 6264565 BAV0214 Bordetella avium 197N hydrolase YP_784752.1 220291 D 360910 CDS YP_784753.1 187476729 6264566 221146..222645 1 NC_010645.1 flavin-containing monoxygenase 222645 6264566 BAV0215 Bordetella avium 197N flavin-containing monoxygenase YP_784753.1 221146 D 360910 CDS YP_784754.1 187476730 6264567 222642..223541 1 NC_010645.1 3-hydroxybutyryl-CoA dehydrogenase 223541 6264567 BAV0216 Bordetella avium 197N 3-hydroxybutyryl-CoA dehydrogenase YP_784754.1 222642 D 360910 CDS YP_784755.1 187476731 6264568 complement(223799..>224779) 1 NC_010645.1 hypothetical protein >224779 6264568 BAV0217 Bordetella avium 197N hypothetical protein YP_784755.1 223799 R 360910 CDS YP_784756.1 187476732 6264569 complement(224818..225786) 1 NC_010645.1 ketopantoate reductase 225786 6264569 BAV0218 Bordetella avium 197N ketopantoate reductase YP_784756.1 224818 R 360910 CDS YP_784757.1 187476733 6264570 complement(225791..226543) 1 NC_010645.1 class II aldolase 226543 6264570 BAV0219 Bordetella avium 197N class II aldolase YP_784757.1 225791 R 360910 CDS YP_784758.1 187476734 6264571 226664..227575 1 NC_010645.1 LysR family transcriptional regulator 227575 6264571 BAV0220 Bordetella avium 197N LysR family transcriptional regulator YP_784758.1 226664 D 360910 CDS YP_784759.1 187476735 6264572 complement(227628..228383) 1 NC_010645.1 GntR family transcriptional regulator 228383 6264572 BAV0221 Bordetella avium 197N GntR family transcriptional regulator YP_784759.1 227628 R 360910 CDS YP_784760.1 187476736 6264573 complement(228395..229969) 1 NC_010645.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 229969 6264573 BAV0222 Bordetella avium 197N acyl-CoA synthetase YP_784760.1 228395 R 360910 CDS YP_784761.1 187476737 6264574 complement(229982..231022) 1 NC_010645.1 hypothetical protein 231022 6264574 BAV0223 Bordetella avium 197N hypothetical protein YP_784761.1 229982 R 360910 CDS YP_784762.1 187476738 6264575 complement(231039..>231737) 1 NC_010645.1 short-chain dehydrogenase/reductase >231737 6264575 BAV0224 Bordetella avium 197N short-chain dehydrogenase/reductase YP_784762.1 231039 R 360910 CDS YP_784763.1 187476739 6264576 231955..232905 1 NC_010645.1 hypothetical protein 232905 6264576 BAV0225 Bordetella avium 197N hypothetical protein YP_784763.1 231955 D 360910 CDS YP_784764.1 187476740 6264577 232908..234071 1 NC_010645.1 acyl-CoA dehydrogenase 234071 6264577 BAV0226 Bordetella avium 197N acyl-CoA dehydrogenase YP_784764.1 232908 D 360910 CDS YP_784765.1 187476741 6264578 complement(234056..234667) 1 NC_010645.1 amino acid efflux protein 234667 6264578 BAV0227 Bordetella avium 197N amino acid efflux protein YP_784765.1 234056 R 360910 CDS YP_784766.1 187476742 6264579 234757..236085 1 NC_010645.1 ribosomal RNA small subunit methyltransferase 236085 rsmB 6264579 rsmB Bordetella avium 197N ribosomal RNA small subunit methyltransferase YP_784766.1 234757 D 360910 CDS YP_784767.1 187476743 6267731 236128..236712 1 NC_010645.1 hypothetical protein 236712 6267731 BAV0229 Bordetella avium 197N hypothetical protein YP_784767.1 236128 D 360910 CDS YP_784768.1 187476744 6264580 236709..239006 1 NC_010645.1 two-component system sensor kinase 239006 6264580 BAV0230 Bordetella avium 197N two-component system sensor kinase YP_784768.1 236709 D 360910 CDS YP_784769.1 187476745 6264581 239018..239701 1 NC_010645.1 two-component system response regulator 239701 6264581 BAV0231 Bordetella avium 197N two-component system response regulator YP_784769.1 239018 D 360910 CDS YP_784770.1 187476746 6264582 239698..241077 1 NC_010645.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 241077 trkA 6264582 trkA Bordetella avium 197N potassium transporter peripheral membrane component YP_784770.1 239698 D 360910 CDS YP_784771.1 187476747 6267828 241101..242570 1 NC_010645.1 Trk system potassium uptake protein 242570 trkH 6267828 trkH Bordetella avium 197N Trk system potassium uptake protein YP_784771.1 241101 D 360910 CDS YP_784772.1 187476748 6267829 242938..244149 1 NC_010645.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 244149 6267829 BAV0234 Bordetella avium 197N carboxylate-amine ligase YP_784772.1 242938 D 360910 CDS YP_784773.1 187476749 6264583 complement(244156..245085) 1 NC_010645.1 hypothetical protein 245085 6264583 BAV0235 Bordetella avium 197N hypothetical protein YP_784773.1 244156 R 360910 CDS YP_784774.1 187476750 6264584 245295..245906 1 NC_010645.1 phosphoribosyl transferase 245906 6264584 BAV0236 Bordetella avium 197N phosphoribosyl transferase YP_784774.1 245295 D 360910 CDS YP_784775.1 187476751 6264585 245957..246427 1 NC_010645.1 RNA methyltransferase 246427 6264585 BAV0237 Bordetella avium 197N RNA methyltransferase YP_784775.1 245957 D 360910 CDS YP_784776.1 187476752 6264586 complement(246442..247431) 1 NC_010645.1 hypothetical protein 247431 6264586 BAV0238 Bordetella avium 197N hypothetical protein YP_784776.1 246442 R 360910 CDS YP_784777.1 187476753 6264587 complement(247468..248532) 1 NC_010645.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 248532 gpsA 6264587 gpsA Bordetella avium 197N NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_784777.1 247468 R 360910 CDS YP_784778.1 187476754 6267112 complement(248549..249067) 1 NC_010645.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 249067 secB 6267112 secB Bordetella avium 197N preprotein translocase subunit SecB YP_784778.1 248549 R 360910 CDS YP_784779.1 187476755 6267747 complement(249124..249381) 1 NC_010645.1 glutaredoxin 3 249381 grxC 6267747 grxC Bordetella avium 197N glutaredoxin 3 YP_784779.1 249124 R 360910 CDS YP_784780.1 187476756 6267119 complement(249446..>249868) 1 NC_010645.1 sulfurtransferase >249868 6267119 BAV0242 Bordetella avium 197N sulfurtransferase YP_784780.1 249446 R 360910 CDS YP_784781.1 187476757 6264588 250052..250804 1 NC_010645.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 250804 gpmA 6264588 gpmA Bordetella avium 197N phosphoglyceromutase YP_784781.1 250052 D 360910 CDS YP_784782.1 187476758 6267110 250809..252395 1 NC_010645.1 exported peptidase 252395 6267110 BAV0244 Bordetella avium 197N exported peptidase YP_784782.1 250809 D 360910 CDS YP_784783.1 187476759 6264589 <252417..253871 1 NC_010645.1 carboxy-terminal processing protease 253871 ctpA 6264589 ctpA Bordetella avium 197N carboxy-terminal processing protease YP_784783.1 <252417 D 360910 CDS YP_784784.1 187476760 6266819 253868..254617 1 NC_010645.1 adenylyltransferase 254617 thiF 6266819 thiF Bordetella avium 197N adenylyltransferase YP_784784.1 253868 D 360910 CDS YP_784785.1 187476761 6267802 254679..255389 1 NC_010645.1 GntR family transcriptional regulator 255389 6267802 BAV0247 Bordetella avium 197N GntR family transcriptional regulator YP_784785.1 254679 D 360910 CDS YP_784786.1 187476762 6264590 255396..256808 1 NC_010645.1 FAD-linked oxidoreductase 256808 6264590 BAV0248 Bordetella avium 197N FAD-linked oxidoreductase YP_784786.1 255396 D 360910 CDS YP_784787.1 187476763 6264591 complement(256827..257798) 1 NC_010645.1 pH-regulated membrane protein 257798 alX 6264591 alX Bordetella avium 197N pH-regulated membrane protein YP_784787.1 256827 R 360910 CDS YP_784788.1 187476764 6266617 257906..258787 1 NC_010645.1 LysR family transcriptional regulator 258787 6266617 BAV0250 Bordetella avium 197N LysR family transcriptional regulator YP_784788.1 257906 D 360910 CDS YP_784789.1 187476765 6264592 complement(258878..260791) 1 NC_010645.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 260791 thiC 6264592 thiC Bordetella avium 197N thiamine biosynthesis protein ThiC YP_784789.1 258878 R 360910 CDS YP_784790.1 187476766 6267798 261082..261636 1 NC_010645.1 hypothetical protein 261636 6267798 BAV0252 Bordetella avium 197N hypothetical protein YP_784790.1 261082 D 360910 CDS YP_784791.1 187476767 6264593 complement(261655..>262050) 1 NC_010645.1 transcriptional regulator >262050 6264593 BAV0253 Bordetella avium 197N transcriptional regulator YP_784791.1 261655 R 360910 CDS YP_784792.1 187476768 6264594 complement(262197..>262607) 1 NC_010645.1 transcriptional regulator >262607 6264594 BAV0254 Bordetella avium 197N transcriptional regulator YP_784792.1 262197 R 360910 CDS YP_784793.1 187476769 6264595 262695..263468 1 NC_010645.1 transcriptional regulator 263468 6264595 BAV0255 Bordetella avium 197N transcriptional regulator YP_784793.1 262695 D 360910 CDS YP_784794.1 187476770 6264596 complement(263485..264618) 1 NC_010645.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 264618 proB 6264596 proB Bordetella avium 197N gamma-glutamyl kinase YP_784794.1 263485 R 360910 CDS YP_784795.1 187476771 6267576 complement(264697..265815) 1 NC_010645.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 265815 obgE 6267576 obgE Bordetella avium 197N GTPase ObgE YP_784795.1 264697 R 360910 CDS YP_784796.1 187476772 6264597 complement(265998..266258) 1 NC_010645.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 266258 rpmA 6264597 rpmA Bordetella avium 197N 50S ribosomal protein L27 YP_784796.1 265998 R 360910 CDS YP_784797.1 187476773 6267696 complement(266291..266602) 1 NC_010645.1 50S ribosomal protein L21 266602 rplU 6267696 rplU Bordetella avium 197N 50S ribosomal protein L21 YP_784797.1 266291 R 360910 CDS YP_784798.1 187476774 6267691 266947..267912 1 NC_010645.1 octaprenyl-diphosphate synthase 267912 cel 6267691 cel Bordetella avium 197N octaprenyl-diphosphate synthase YP_784798.1 266947 D 360910 CDS YP_784799.1 187476775 6267877 complement(268341..>268616) 1 NC_010645.1 hypothetical protein >268616 6267877 BAV0261 Bordetella avium 197N hypothetical protein YP_784799.1 268341 R 360910 CDS YP_784800.1 187476776 6264598 complement(268628..270964) 1 NC_010645.1 bifunctional protein include phospholipase and oxidoreductase 270964 6264598 BAV0262 Bordetella avium 197N bifunctional protein include phospholipase and oxidoreductase YP_784800.1 268628 R 360910 CDS YP_784801.1 187476777 6264599 complement(271008..271793) 1 NC_010645.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 271793 bdhA 6264599 bdhA Bordetella avium 197N 3-hydroxybutyrate dehydrogenase YP_784801.1 271008 R 360910 CDS YP_784802.1 187476778 6266695 complement(271841..272581) 1 NC_010645.1 converts acetoacetate to acetone and carbon dioxide; acetoacetate decarboxylase 272581 adc 6266695 adc Bordetella avium 197N acetoacetate decarboxylase YP_784802.1 271841 R 360910 CDS YP_784803.1 187476779 6266598 273187..273738 1 NC_010645.1 hypothetical protein 273738 6266598 BAV0265 Bordetella avium 197N hypothetical protein YP_784803.1 273187 D 360910 CDS YP_784804.1 187476780 6264600 273790..275283 1 NC_010645.1 hypothetical protein 275283 6264600 BAV0266 Bordetella avium 197N hypothetical protein YP_784804.1 273790 D 360910 CDS YP_784805.1 187476781 6264601 275344..275820 1 NC_010645.1 hypothetical protein 275820 6264601 BAV0267 Bordetella avium 197N hypothetical protein YP_784805.1 275344 D 360910 CDS YP_784806.1 187476782 6264602 275829..276233 1 NC_010645.1 hypothetical protein 276233 6264602 BAV0268 Bordetella avium 197N hypothetical protein YP_784806.1 275829 D 360910 CDS YP_784807.1 187476783 6264603 276250..277992 1 NC_010645.1 hypothetical protein 277992 6264603 BAV0269 Bordetella avium 197N hypothetical protein YP_784807.1 276250 D 360910 CDS YP_784808.1 187476784 6264604 277989..278903 1 NC_010645.1 hypothetical protein 278903 6264604 BAV0270 Bordetella avium 197N hypothetical protein YP_784808.1 277989 D 360910 CDS YP_784809.1 187476785 6264605 <278906..281524 1 NC_010645.1 ATPase with chaperone activity 281524 6264605 BAV0271 Bordetella avium 197N ATPase with chaperone activity YP_784809.1 <278906 D 360910 CDS YP_784810.1 187476786 6264606 281517..283367 1 NC_010645.1 hypothetical protein 283367 6264606 BAV0272 Bordetella avium 197N hypothetical protein YP_784810.1 281517 D 360910 CDS YP_784811.1 187476787 6264607 283367..283996 1 NC_010645.1 hypothetical protein 283996 6264607 BAV0273 Bordetella avium 197N hypothetical protein YP_784811.1 283367 D 360910 CDS YP_784812.1 187476788 6264608 283993..284379 1 NC_010645.1 hypothetical protein 284379 6264608 BAV0274 Bordetella avium 197N hypothetical protein YP_784812.1 283993 D 360910 CDS YP_784813.1 187476789 6264609 284383..284535 1 NC_010645.1 membrane protein 284535 6264609 BAV0275 Bordetella avium 197N membrane protein YP_784813.1 284383 D 360910 CDS YP_784814.1 187476790 6264610 284535..285467 1 NC_010645.1 extracellular solute-binding protein 285467 6264610 BAV0276 Bordetella avium 197N extracellular solute-binding protein YP_784814.1 284535 D 360910 CDS YP_784815.1 187476791 6264611 285511..286755 1 NC_010645.1 transport protein 286755 6264611 BAV0277 Bordetella avium 197N transport protein YP_784815.1 285511 D 360910 CDS YP_784816.1 187476792 6264612 <286850..288160 1 NC_010645.1 transport protein 288160 6264612 BAV0278 Bordetella avium 197N transport protein YP_784816.1 <286850 D 360910 CDS YP_784817.1 187476793 6264613 288157..288609 1 NC_010645.1 lipoprotein 288609 6264613 BAV0279 Bordetella avium 197N lipoprotein YP_784817.1 288157 D 360910 CDS YP_784818.1 187476794 6264614 <288651..289940 1 NC_010645.1 hypothetical protein 289940 6264614 BAV0280 Bordetella avium 197N hypothetical protein YP_784818.1 <288651 D 360910 CDS YP_784819.1 187476795 6264615 289937..290680 1 NC_010645.1 hypothetical protein 290680 6264615 BAV0281 Bordetella avium 197N hypothetical protein YP_784819.1 289937 D 360910 CDS YP_784820.1 187476796 6264616 290714..294478 1 NC_010645.1 hypothetical protein 294478 6264616 BAV0282 Bordetella avium 197N hypothetical protein YP_784820.1 290714 D 360910 CDS YP_784821.1 187476797 6264617 <294475..295488 1 NC_010645.1 hypothetical protein 295488 6264617 BAV0283 Bordetella avium 197N hypothetical protein YP_784821.1 <294475 D 360910 CDS YP_784822.1 187476798 6264618 295613..296482 1 NC_010645.1 hypothetical protein 296482 6264618 BAV0284 Bordetella avium 197N hypothetical protein YP_784822.1 295613 D 360910 CDS YP_784823.1 187476799 6264619 complement(296612..298021) 1 NC_010645.1 amidase 298021 6264619 BAV0285 Bordetella avium 197N amidase YP_784823.1 296612 R 360910 CDS YP_784824.1 187476800 6264620 complement(298069..299295) 1 NC_010645.1 branched-chain amino acid binding protein 299295 6264620 BAV0286 Bordetella avium 197N branched-chain amino acid binding protein YP_784824.1 298069 R 360910 CDS YP_784825.1 187476801 6264621 <299415..300341 1 NC_010645.1 LysR family transcriptional regulator 300341 6264621 BAV0287 Bordetella avium 197N LysR family transcriptional regulator YP_784825.1 <299415 D 360910 CDS YP_784826.1 187476802 6264622 300438..301427 1 NC_010645.1 branched-chain amino acid transport permease 301427 6264622 BAV0288 Bordetella avium 197N branched-chain amino acid transport permease YP_784826.1 300438 D 360910 CDS YP_784827.1 187476803 6264623 301438..302319 1 NC_010645.1 branched-chain amino acid transport permease 302319 6264623 BAV0289 Bordetella avium 197N branched-chain amino acid transport permease YP_784827.1 301438 D 360910 CDS YP_784828.1 187476804 6264624 302333..303040 1 NC_010645.1 branched-chain amino acid ABC transporter ATP-binding protein 303040 6264624 BAV0290 Bordetella avium 197N branched-chain amino acid ABC transporter ATP-binding protein YP_784828.1 302333 D 360910 CDS YP_784829.1 187476805 6264625 303042..303782 1 NC_010645.1 branched-chain amino acid ABC transporter ATP-binding protein 303782 6264625 BAV0291 Bordetella avium 197N branched-chain amino acid ABC transporter ATP-binding protein YP_784829.1 303042 D 360910 CDS YP_784830.1 187476806 6264626 complement(303898..304734) 1 NC_010645.1 metallo-phosphoesterase 304734 6264626 BAV0292 Bordetella avium 197N metallo-phosphoesterase YP_784830.1 303898 R 360910 CDS YP_784831.1 187476807 6264627 complement(304769..305713) 1 NC_010645.1 membrane protein 305713 6264627 BAV0293 Bordetella avium 197N membrane protein YP_784831.1 304769 R 360910 CDS YP_784832.1 187476808 6264628 305783..306559 1 NC_010645.1 AraC family transcriptional regulator 306559 6264628 BAV0294 Bordetella avium 197N AraC family transcriptional regulator YP_784832.1 305783 D 360910 CDS YP_784833.1 187476809 6264629 306923..308860 1 NC_010645.1 membrane protein 308860 6264629 BAV0295 Bordetella avium 197N membrane protein YP_784833.1 306923 D 360910 CDS YP_784834.1 187476810 6267876 309608..310882 1 NC_010645.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 310882 hemA 6267876 hemA Bordetella avium 197N glutamyl-tRNA reductase YP_784834.1 309608 D 360910 CDS YP_784835.1 187476811 6267150 310975..312045 1 NC_010645.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 312045 prfA 6267150 prfA Bordetella avium 197N peptide chain release factor 1 YP_784835.1 310975 D 360910 CDS YP_784836.1 187476812 6267568 312051..312860 1 NC_010645.1 protein methyltransferase 312860 hemK 6267568 hemK Bordetella avium 197N protein methyltransferase YP_784836.1 312051 D 360910 CDS YP_784837.1 187476813 6267158 312901..313227 1 NC_010645.1 hypothetical protein 313227 6267158 BAV0299 Bordetella avium 197N hypothetical protein YP_784837.1 312901 D 360910 CDS YP_784838.1 187476814 6264631 313231..313797 1 NC_010645.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 313797 ubiX 6264631 ubiX Bordetella avium 197N 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_784838.1 313231 D 360910 CDS YP_784839.1 187476815 6267913 complement(313807..314295) 1 NC_010645.1 hypothetical protein 314295 6267913 BAV0301 Bordetella avium 197N hypothetical protein YP_784839.1 313807 R 360910 CDS YP_784840.1 187476816 6264632 complement(314304..316028) 1 NC_010645.1 sulfite reductase 316028 cysI 6264632 cysI Bordetella avium 197N sulfite reductase YP_784840.1 314304 R 360910 CDS YP_784841.1 187476817 6266843 complement(316243..316893) 1 NC_010645.1 carbonic anhydrase 316893 6266843 BAV0303 Bordetella avium 197N carbonic anhydrase YP_784841.1 316243 R 360910 CDS YP_784842.1 187476818 6264633 complement(317117..318157) 1 NC_010645.1 hypothetical protein 318157 6264633 BAV0304 Bordetella avium 197N hypothetical protein YP_784842.1 317117 R 360910 CDS YP_784843.1 187476819 6264634 complement(318161..>318976) 1 NC_010645.1 3-oxoadipate enol-lactone hydrolase >318976 catD2 6264634 catD2 Bordetella avium 197N 3-oxoadipate enol-lactone hydrolase YP_784843.1 318161 R 360910 CDS YP_784844.1 187476820 6266758 complement(318981..319277) 1 NC_010645.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 319277 6266758 BAV0306 Bordetella avium 197N YciI-like protein YP_784844.1 318981 R 360910 CDS YP_784845.1 187476821 6264635 complement(319292..319567) 1 NC_010645.1 methylmuconolactone isomerase 319567 catC2 6264635 catC2 Bordetella avium 197N methylmuconolactone isomerase YP_784845.1 319292 R 360910 CDS YP_784846.1 187476822 6266757 complement(319641..320285) 1 NC_010645.1 3-oxoadipate CoA-transferase subunit 320285 catJ 6266757 catJ Bordetella avium 197N 3-oxoadipate CoA-transferase subunit YP_784846.1 319641 R 360910 CDS YP_784847.1 187476823 6266760 complement(320288..320905) 1 NC_010645.1 3-oxoadipate CoA-transferase subunit A 320905 catI 6266760 catI Bordetella avium 197N 3-oxoadipate CoA-transferase subunit A YP_784847.1 320288 R 360910 CDS YP_784848.1 187476824 6266759 complement(321109..321834) 1 NC_010645.1 acetoacetyl-CoA reductase 321834 6266759 BAV0310 Bordetella avium 197N acetoacetyl-CoA reductase YP_784848.1 321109 R 360910 CDS YP_784849.1 187476825 6264636 complement(321850..323190) 1 NC_010645.1 short-chain fatty acids transporter 323190 6264636 BAV0311 Bordetella avium 197N short-chain fatty acids transporter YP_784849.1 321850 R 360910 CDS YP_784850.1 187476826 6264637 complement(323260..324192) 1 NC_010645.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 324192 6264637 BAV0312 Bordetella avium 197N 3-hydroxybutyryl-CoA dehydrogenase YP_784850.1 323260 R 360910 CDS YP_784851.1 187476827 6264638 complement(324428..>325099) 1 NC_010645.1 ; One of 11 fimbrial subunits.; fimbrial subunit >325099 6264638 BAV0313 Bordetella avium 197N fimbrial subunit YP_784851.1 324428 R 360910 CDS YP_784852.1 187476828 6264639 complement(325255..325905) 1 NC_010645.1 One of 11 fimbrial subunits.; fimbrial subunit 325905 6264639 BAV0314 Bordetella avium 197N fimbrial subunit YP_784852.1 325255 R 360910 CDS YP_784853.1 187476829 6264640 complement(326049..>326762) 1 NC_010645.1 ; One of 11 fimbrial subunits.; fimbrial subunit >326762 6264640 BAV0315 Bordetella avium 197N fimbrial subunit YP_784853.1 326049 R 360910 CDS YP_784854.1 187476830 6264641 complement(326854..327561) 1 NC_010645.1 One of 11 fimbrial subunits.; fimbrial subunit 327561 6264641 BAV0316 Bordetella avium 197N fimbrial subunit YP_784854.1 326854 R 360910 CDS YP_784855.1 187476831 6264642 complement(327704..329560) 1 NC_010645.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 329560 ilvD 6264642 ilvD Bordetella avium 197N dihydroxy-acid dehydratase YP_784855.1 327704 R 360910 CDS YP_784856.1 187476832 6267237 <329758..330294 1 NC_010645.1 acetyltransferase 330294 6267237 BAV0318 Bordetella avium 197N acetyltransferase YP_784856.1 <329758 D 360910 CDS YP_784857.1 187476833 6264643 complement(330316..331050) 1 NC_010645.1 hypothetical protein 331050 6264643 BAV0319 Bordetella avium 197N hypothetical protein YP_784857.1 330316 R 360910 CDS YP_784858.1 187476834 6264644 331148..333958 1 NC_010645.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 333958 ppc 6264644 ppc Bordetella avium 197N phosphoenolpyruvate carboxylase YP_784858.1 331148 D 360910 CDS YP_784859.1 187476835 6267558 334097..334759 1 NC_010645.1 One of 11 fimbrial subunits; fimbrial subunit 334759 6267558 BAV0321 Bordetella avium 197N fimbrial subunit YP_784859.1 334097 D 360910 CDS YP_784860.1 187476836 6264645 complement(334764..336101) 1 NC_010645.1 hypothetical protein 336101 6264645 BAV0322 Bordetella avium 197N hypothetical protein YP_784860.1 334764 R 360910 CDS YP_784861.1 187476837 6264646 complement(336179..336739) 1 NC_010645.1 5'(3')-deoxyribonucleotidase 336739 6264646 BAV0323 Bordetella avium 197N 5'(3')-deoxyribonucleotidase YP_784861.1 336179 R 360910 CDS YP_784862.1 187476838 6264647 complement(336833..338323) 1 NC_010645.1 multidrug efflux system outer membrane protein 338323 6264647 BAV0324 Bordetella avium 197N multidrug efflux system outer membrane protein YP_784862.1 336833 R 360910 CDS YP_784863.1 187476839 6264648 complement(338340..341522) 1 NC_010645.1 multidrug efflux system transmembrane protein 341522 6264648 BAV0325 Bordetella avium 197N multidrug efflux system transmembrane protein YP_784863.1 338340 R 360910 CDS YP_784864.1 187476840 6264649 complement(341543..342730) 1 NC_010645.1 HlyD family secretion protein 342730 6264649 BAV0326 Bordetella avium 197N HlyD family secretion protein YP_784864.1 341543 R 360910 CDS YP_784865.1 187476841 6264650 342974..343996 1 NC_010645.1 LysR family transcriptional regulator 343996 6264650 BAV0327 Bordetella avium 197N LysR family transcriptional regulator YP_784865.1 342974 D 360910 CDS YP_784866.1 187476842 6264651 344091..345200 1 NC_010645.1 membrane protein 345200 6264651 BAV0328 Bordetella avium 197N membrane protein YP_784866.1 344091 D 360910 CDS YP_784867.1 187476843 6264652 345279..346046 1 NC_010645.1 hypothetical protein 346046 6264652 BAV0329 Bordetella avium 197N hypothetical protein YP_784867.1 345279 D 360910 CDS YP_784868.1 187476844 6264653 346154..347326 1 NC_010645.1 voltage-gated potassium channel 347326 kch 6264653 kch Bordetella avium 197N voltage-gated potassium channel YP_784868.1 346154 D 360910 CDS YP_784869.1 187476845 6267262 complement(347393..348064) 1 NC_010645.1 type IV prepilin leader peptidase 348064 6267262 BAV0331 Bordetella avium 197N type IV prepilin leader peptidase YP_784869.1 347393 R 360910 CDS YP_784870.1 187476846 6264654 complement(348075..349268) 1 NC_010645.1 general secretion pathway protein F 349268 gspF 6264654 gspF Bordetella avium 197N general secretion pathway protein F YP_784870.1 348075 R 360910 CDS YP_784871.1 187476847 6267125 349403..351985 1 NC_010645.1 general secretion pathway protein D 351985 gspD 6267125 gspD Bordetella avium 197N general secretion pathway protein D YP_784871.1 349403 D 360910 CDS YP_784872.1 187476848 6267123 351982..353403 1 NC_010645.1 general secretion pathway protein E 353403 gspE 6267123 gspE Bordetella avium 197N general secretion pathway protein E YP_784872.1 351982 D 360910 CDS YP_784873.1 187476849 6267124 complement(353424..354185) 1 NC_010645.1 general secretion pathway protein N 354185 gspN 6267124 gspN Bordetella avium 197N general secretion pathway protein N YP_784873.1 353424 R 360910 CDS YP_784874.1 187476850 6267133 complement(354187..354747) 1 NC_010645.1 general secretion pathway protein M 354747 gspM 6267133 gspM Bordetella avium 197N general secretion pathway protein M YP_784874.1 354187 R 360910 CDS YP_784875.1 187476851 6267132 complement(354744..355718) 1 NC_010645.1 Weakly similarity limited to the listed proteins; general secretion pathway protein L 355718 gspL 6267132 gspL Bordetella avium 197N general secretion pathway protein L YP_784875.1 354744 R 360910 CDS YP_784876.1 187476852 6267131 complement(355715..356653) 1 NC_010645.1 general secretion pathway protein K 356653 gspK 6267131 gspK Bordetella avium 197N general secretion pathway protein K YP_784876.1 355715 R 360910 CDS YP_784877.1 187476853 6267130 complement(356650..357258) 1 NC_010645.1 general secretion pathway protein J 357258 gspJ 6267130 gspJ Bordetella avium 197N general secretion pathway protein J YP_784877.1 356650 R 360910 CDS YP_784878.1 187476854 6267129 complement(357255..357638) 1 NC_010645.1 general secretion pathway protein I 357638 gspI 6267129 gspI Bordetella avium 197N general secretion pathway protein I YP_784878.1 357255 R 360910 CDS YP_784879.1 187476855 6267128 complement(357625..358113) 1 NC_010645.1 general secretion pathway protein H 358113 gspH 6267128 gspH Bordetella avium 197N general secretion pathway protein H YP_784879.1 357625 R 360910 CDS YP_784880.1 187476856 6267127 complement(358085..>358510) 1 NC_010645.1 general secretion pathway protein G >358510 gspG 6267127 gspG Bordetella avium 197N general secretion pathway protein G YP_784880.1 358085 R 360910 CDS YP_784881.1 187476857 6267126 complement(358623..358940) 1 NC_010645.1 general secretion pathway protein C 358940 gspC 6267126 gspC Bordetella avium 197N general secretion pathway protein C YP_784881.1 358623 R 360910 CDS YP_784882.1 187476858 6267122 complement(359193..359516) 1 NC_010645.1 hypothetical protein 359516 6267122 BAV0344 Bordetella avium 197N hypothetical protein YP_784882.1 359193 R 360910 CDS YP_784883.1 187476859 6264655 complement(359614..>359919) 1 NC_010645.1 hypothetical protein >359919 6264655 BAV0345 Bordetella avium 197N hypothetical protein YP_784883.1 359614 R 360910 CDS YP_784884.1 187476860 6267907 362211..363746 1 NC_010645.1 tyrosine permease 363746 tyrP 6267907 tyrP Bordetella avium 197N tyrosine permease YP_784884.1 362211 D 360910 CDS YP_784885.1 187476861 6267908 363762..363866 1 NC_010645.1 hypothetical protein 363866 6267908 BAV0349 Bordetella avium 197N hypothetical protein YP_784885.1 363762 D 360910 CDS YP_784886.1 187476862 6264657 363880..365253 1 NC_010645.1 amino acid transporter 365253 6264657 BAV0350 Bordetella avium 197N amino acid transporter YP_784886.1 363880 D 360910 CDS YP_784887.1 187476863 6264658 365642..366097 1 NC_010645.1 hypothetical protein 366097 6264658 BAV0351 Bordetella avium 197N hypothetical protein YP_784887.1 365642 D 360910 CDS YP_784888.1 187476864 6264659 complement(366238..367056) 1 NC_010645.1 signaling protein 367056 6264659 BAV0352 Bordetella avium 197N signaling protein YP_784888.1 366238 R 360910 CDS YP_784889.1 187476865 6264660 complement(367409..368692) 1 NC_010645.1 methyl-accepting-chemotaxis-protein 368692 6264660 BAV0353 Bordetella avium 197N methyl-accepting-chemotaxis-protein YP_784889.1 367409 R 360910 CDS YP_784890.1 187476866 6264661 complement(368756..369313) 1 NC_010645.1 This CDS does not exhibit a typical prokaryotic lipoprotein signal peptide as is lacking a charged amino acid (K or R) in the first 7 residues.; Also similar to BAV3189 (36.6 38d); outer membrane lipoprotein 369313 blc 6264661 blc Bordetella avium 197N outer membrane lipoprotein YP_784890.1 368756 R 360910 CDS YP_784891.1 187476867 6266720 complement(369408..370397) 1 NC_010645.1 MerR family transcriptional regulator 370397 6266720 BAV0355 Bordetella avium 197N MerR family transcriptional regulator YP_784891.1 369408 R 360910 CDS YP_784892.1 187476868 6264662 complement(370809..>373739) 1 NC_010645.1 molybdenum-containing aldehyde oxido-reductase >373739 6264662 BAV0356 Bordetella avium 197N molybdenum-containing aldehyde oxido-reductase YP_784892.1 370809 R 360910 CDS YP_784893.1 187476869 6264663 complement(373809..>374894) 1 NC_010645.1 outer membrane porin protein >374894 6264663 BAV0357 Bordetella avium 197N outer membrane porin protein YP_784893.1 373809 R 360910 CDS YP_784894.1 187476870 6264664 complement(375481..>375798) 1 NC_010645.1 restriction endonuclease (partial) >375798 6264664 BAV0358 Bordetella avium 197N restriction endonuclease (partial) YP_784894.1 375481 R 360910 CDS YP_784895.1 187476871 6264665 complement(375893..376273) 1 NC_010645.1 hypothetical protein 376273 6264665 BAV0359 Bordetella avium 197N hypothetical protein YP_784895.1 375893 R 360910 CDS YP_784896.1 187476872 6264666 complement(376293..>376439) 1 NC_010645.1 type I restriction-modification system specificity determinant (partial) >376439 6264666 BAV0360 Bordetella avium 197N type I restriction-modification system specificity determinant (partial) YP_784896.1 376293 R 360910 CDS YP_784897.1 187476873 6264667 complement(376446..376658) 1 NC_010645.1 hypothetical protein 376658 6264667 BAV0361 Bordetella avium 197N hypothetical protein YP_784897.1 376446 R 360910 CDS YP_784898.1 187476874 6264668 complement(376723..377004) 1 NC_010645.1 hypothetical protein 377004 6264668 BAV0362 Bordetella avium 197N hypothetical protein YP_784898.1 376723 R 360910 CDS YP_784899.1 187476875 6264669 377499..378572 1 NC_010645.1 hypothetical protein 378572 6264669 BAV0363 Bordetella avium 197N hypothetical protein YP_784899.1 377499 D 360910 CDS YP_784900.1 187476876 6264670 complement(379168..379617) 1 NC_010645.1 hypothetical protein 379617 6264670 BAV0364 Bordetella avium 197N hypothetical protein YP_784900.1 379168 R 360910 CDS YP_784901.1 187476877 6264671 complement(379904..380680) 1 NC_010645.1 hypothetical protein 380680 6264671 BAV0365 Bordetella avium 197N hypothetical protein YP_784901.1 379904 R 360910 CDS YP_784902.1 187476878 6264672 complement(380680..381192) 1 NC_010645.1 hypothetical protein 381192 6264672 BAV0366 Bordetella avium 197N hypothetical protein YP_784902.1 380680 R 360910 CDS YP_784903.1 187476879 6264673 complement(381282..382313) 1 NC_010645.1 hypothetical protein 382313 6264673 BAV0367 Bordetella avium 197N hypothetical protein YP_784903.1 381282 R 360910 CDS YP_784904.1 187476880 6264674 complement(382298..>383866) 1 NC_010645.1 hypothetical protein >383866 6264674 BAV0368 Bordetella avium 197N hypothetical protein YP_784904.1 382298 R 360910 CDS YP_784905.1 187476881 6264675 complement(384024..384254) 1 NC_010645.1 hypothetical protein 384254 6264675 BAV0369 Bordetella avium 197N hypothetical protein YP_784905.1 384024 R 360910 CDS YP_784906.1 187476882 6264676 complement(384251..384484) 1 NC_010645.1 Plasmid-like protein 384484 6264676 BAV0370 Bordetella avium 197N Plasmid-like protein YP_784906.1 384251 R 360910 CDS YP_784907.1 187476883 6264677 complement(384590..384793) 1 NC_010645.1 hypothetical protein 384793 6264677 BAV0371 Bordetella avium 197N hypothetical protein YP_784907.1 384590 R 360910 CDS YP_784908.1 187476884 6264678 complement(385134..386186) 1 NC_010645.1 conjugal transfer protein 386186 virB6 6264678 virB6 Bordetella avium 197N conjugal transfer protein YP_784908.1 385134 R 360910 CDS YP_784909.1 187476885 6267927 complement(386188..386448) 1 NC_010645.1 conjugal-transfer protein 386448 traG 6267927 traG Bordetella avium 197N conjugal-transfer protein YP_784909.1 386188 R 360910 CDS YP_784910.1 187476886 6267826 complement(386445..386891) 1 NC_010645.1 plasmid-like protein 386891 6267826 BAV0374 Bordetella avium 197N plasmid-like protein YP_784910.1 386445 R 360910 CDS YP_784911.1 187476887 6264680 complement(387883..388161) 1 NC_010645.1 plasmid-like protein 388161 6264680 BAV0377 Bordetella avium 197N plasmid-like protein YP_784911.1 387883 R 360910 CDS YP_784912.1 187476888 6264681 complement(388166..389161) 1 NC_010645.1 nickase 389161 traR 6264681 traR Bordetella avium 197N nickase YP_784912.1 388166 R 360910 CDS YP_784913.1 187476889 6264683 complement(389696..390706) 1 NC_010645.1 plasmid-like protein 390706 6264683 BAV0381 Bordetella avium 197N plasmid-like protein YP_784913.1 389696 R 360910 CDS YP_784914.1 187476890 6264684 complement(390703..390972) 1 NC_010645.1 plasmid-like protein 390972 6264684 BAV0382 Bordetella avium 197N plasmid-like protein YP_784914.1 390703 R 360910 CDS YP_784915.1 187476891 6264685 391398..392078 1 NC_010645.1 serine/threonine protein phosphatase 392078 6264685 BAV0383 Bordetella avium 197N serine/threonine protein phosphatase YP_784915.1 391398 D 360910 CDS YP_784916.1 187476892 6264686 complement(392184..392498) 1 NC_010645.1 transposase 392498 6264686 BAV0384 Bordetella avium 197N transposase YP_784916.1 392184 R 360910 CDS YP_784917.1 187476893 6264687 complement(392900..396034) 1 NC_010645.1 restriction-modification system, endonuclease subunit 396034 6264687 BAV0385 Bordetella avium 197N restriction-modification system, endonuclease subunit YP_784917.1 392900 R 360910 CDS YP_784918.1 187476894 6264688 complement(396052..397290) 1 NC_010645.1 restriction modification system, specificity subunit 397290 6264688 BAV0386 Bordetella avium 197N restriction modification system, specificity subunit YP_784918.1 396052 R 360910 CDS YP_784919.1 187476895 6264689 complement(397292..>400066) 1 NC_010645.1 restriction-modification system, modification (methylase) subunit >400066 6264689 BAV0387 Bordetella avium 197N restriction-modification system, modification (methylase) subunit YP_784919.1 397292 R 360910 CDS YP_784920.1 187476896 6264690 complement(400528..401154) 1 NC_010645.1 hypothetical protein 401154 6264690 BAV0388 Bordetella avium 197N hypothetical protein YP_784920.1 400528 R 360910 CDS YP_784921.1 187476897 6264692 complement(402633..403667) 1 NC_010645.1 integrase 403667 6264692 BAV0391 Bordetella avium 197N integrase YP_784921.1 402633 R 360910 CDS YP_784922.1 187476898 6264693 complement(403664..403870) 1 NC_010645.1 phage protein 403870 6264693 BAV0392 Bordetella avium 197N phage protein YP_784922.1 403664 R 360910 CDS YP_784923.1 187476899 6264694 complement(403960..404547) 1 NC_010645.1 hypothetical protein 404547 6264694 BAV0393 Bordetella avium 197N hypothetical protein YP_784923.1 403960 R 360910 CDS YP_784924.1 187476900 6264695 complement(404730..>405026) 1 NC_010645.1 hypothetical protein >405026 6264695 BAV0394 Bordetella avium 197N hypothetical protein YP_784924.1 404730 R 360910 CDS YP_784925.1 187476901 6264696 complement(405023..405883) 1 NC_010645.1 hypothetical protein 405883 6264696 BAV0395 Bordetella avium 197N hypothetical protein YP_784925.1 405023 R 360910 CDS YP_784926.1 187476902 6264697 complement(405880..406782) 1 NC_010645.1 Required for efficient pilin antigenic variation; recombination associated protein 406782 rdgC 6264697 rdgC Bordetella avium 197N recombination associated protein YP_784926.1 405880 R 360910 CDS YP_784927.1 187476903 6264698 complement(406794..407114) 1 NC_010645.1 hypothetical protein 407114 6264698 BAV0397 Bordetella avium 197N hypothetical protein YP_784927.1 406794 R 360910 CDS YP_784928.1 187476904 6264699 complement(407193..408224) 1 NC_010645.1 phage recombination protein 408224 recT 6264699 recT Bordetella avium 197N phage recombination protein YP_784928.1 407193 R 360910 CDS YP_784929.1 187476905 6267633 complement(408221..409075) 1 NC_010645.1 Also similar to the C-terminal region of Escherichia coli exodeoxyribonuclease VIII, recE; length 866 aa; id=37.4; ungapped id=41.1; E()=1.5e-25; 278 aa overlap; query 14-280 aa; subject 597-860 aa; phage-related exonuclease 409075 6267633 BAV0399 Bordetella avium 197N phage-related exonuclease YP_784929.1 408221 R 360910 CDS YP_784930.1 187476906 6264700 complement(409079..409264) 1 NC_010645.1 phage membrane protein 409264 6264700 BAV0400 Bordetella avium 197N phage membrane protein YP_784930.1 409079 R 360910 CDS YP_784931.1 187476907 6264701 complement(409261..409563) 1 NC_010645.1 hypothetical protein 409563 6264701 BAV0401 Bordetella avium 197N hypothetical protein YP_784931.1 409261 R 360910 CDS YP_784932.1 187476908 6264702 complement(409618..410367) 1 NC_010645.1 hypothetical protein 410367 6264702 BAV0402 Bordetella avium 197N hypothetical protein YP_784932.1 409618 R 360910 CDS YP_784933.1 187476909 6264703 410720..410983 1 NC_010645.1 hypothetical protein 410983 6264703 BAV0403 Bordetella avium 197N hypothetical protein YP_784933.1 410720 D 360910 CDS YP_784934.1 187476910 6264704 complement(410984..411109) 1 NC_010645.1 hypothetical protein 411109 6264704 BAV0404 Bordetella avium 197N hypothetical protein YP_784934.1 410984 R 360910 CDS YP_784935.1 187476911 6264705 complement(411161..>411385) 1 NC_010645.1 hypothetical protein >411385 6264705 BAV0405 Bordetella avium 197N hypothetical protein YP_784935.1 411161 R 360910 CDS YP_784936.1 187476912 6264706 complement(411417..>411509) 1 NC_010645.1 hypothetical protein >411509 6264706 BAV0406 Bordetella avium 197N hypothetical protein YP_784936.1 411417 R 360910 CDS YP_784937.1 187476913 6264707 complement(411608..411739) 1 NC_010645.1 hypothetical protein 411739 6264707 BAV0407 Bordetella avium 197N hypothetical protein YP_784937.1 411608 R 360910 CDS YP_784938.1 187476914 6264708 411924..412319 1 NC_010645.1 hypothetical protein 412319 6264708 BAV0408 Bordetella avium 197N hypothetical protein YP_784938.1 411924 D 360910 CDS YP_784939.1 187476915 6264709 complement(412523..414001) 1 NC_010645.1 hypothetical protein 414001 6264709 BAV0409 Bordetella avium 197N hypothetical protein YP_784939.1 412523 R 360910 CDS YP_784940.1 187476916 6264710 complement(414160..415113) 1 NC_010645.1 phage repressor protein 415113 6264710 BAV0410 Bordetella avium 197N phage repressor protein YP_784940.1 414160 R 360910 CDS YP_784941.1 187476917 6264711 complement(415990..416280) 1 NC_010645.1 hypothetical protein 416280 6264711 BAV0411 Bordetella avium 197N hypothetical protein YP_784941.1 415990 R 360910 CDS YP_784942.1 187476918 6264712 416468..416932 1 NC_010645.1 hypothetical protein 416932 6264712 BAV0412 Bordetella avium 197N hypothetical protein YP_784942.1 416468 D 360910 CDS YP_784943.1 187476919 6264713 <416929..417180 1 NC_010645.1 hypothetical protein 417180 6264713 BAV0412A Bordetella avium 197N hypothetical protein YP_784943.1 <416929 D 360910 CDS YP_784944.1 187476920 6264714 417177..418001 1 NC_010645.1 hypothetical protein 418001 6264714 BAV0413 Bordetella avium 197N hypothetical protein YP_784944.1 417177 D 360910 CDS YP_784945.1 187476921 6264715 417988..418686 1 NC_010645.1 hypothetical protein 418686 6264715 BAV0414 Bordetella avium 197N hypothetical protein YP_784945.1 417988 D 360910 CDS YP_784946.1 187476922 6264716 418683..419054 1 NC_010645.1 hypothetical protein 419054 6264716 BAV0415 Bordetella avium 197N hypothetical protein YP_784946.1 418683 D 360910 CDS YP_784947.1 187476923 6264717 419215..419481 1 NC_010645.1 phage protein 419481 6264717 BAV0416 Bordetella avium 197N phage protein YP_784947.1 419215 D 360910 CDS YP_784948.1 187476924 6264718 419563..420075 1 NC_010645.1 phage terminase small subunit 420075 6264718 BAV0417 Bordetella avium 197N phage terminase small subunit YP_784948.1 419563 D 360910 CDS YP_784949.1 187476925 6264719 <420075..421613 1 NC_010645.1 phage terminase large subunit 421613 6264719 BAV0418 Bordetella avium 197N phage terminase large subunit YP_784949.1 <420075 D 360910 CDS YP_784950.1 187476926 6264720 <421618..422121 1 NC_010645.1 phage acetyltransferase 422121 6264720 BAV0419 Bordetella avium 197N phage acetyltransferase YP_784950.1 <421618 D 360910 CDS YP_784951.1 187476927 6264721 422118..422576 1 NC_010645.1 phage protein 422576 6264721 BAV0420 Bordetella avium 197N phage protein YP_784951.1 422118 D 360910 CDS YP_784952.1 187476928 6264722 422697..422957 1 NC_010645.1 phage protein 422957 6264722 BAV0421 Bordetella avium 197N phage protein YP_784952.1 422697 D 360910 CDS YP_784953.1 187476929 6264723 <422959..424626 1 NC_010645.1 phage head-tail connector protein 424626 6264723 BAV0422 Bordetella avium 197N phage head-tail connector protein YP_784953.1 <422959 D 360910 CDS YP_784954.1 187476930 6264724 424713..425060 1 NC_010645.1 hypothetical protein 425060 6264724 BAV0423 Bordetella avium 197N hypothetical protein YP_784954.1 424713 D 360910 CDS YP_784955.1 187476931 6264725 425035..425709 1 NC_010645.1 phage endoprotease 425709 6264725 BAV0424 Bordetella avium 197N phage endoprotease YP_784955.1 425035 D 360910 CDS YP_784956.1 187476932 6264726 425723..426718 1 NC_010645.1 phage protein 426718 6264726 BAV0425 Bordetella avium 197N phage protein YP_784956.1 425723 D 360910 CDS YP_784957.1 187476933 6264727 426737..427159 1 NC_010645.1 phage protein 427159 6264727 BAV0426 Bordetella avium 197N phage protein YP_784957.1 426737 D 360910 CDS YP_784958.1 187476934 6264728 427172..427372 1 NC_010645.1 phage protein 427372 6264728 BAV0427 Bordetella avium 197N phage protein YP_784958.1 427172 D 360910 CDS YP_784959.1 187476935 6264729 427447..428118 1 NC_010645.1 phage protein 428118 6264729 BAV0428 Bordetella avium 197N phage protein YP_784959.1 427447 D 360910 CDS YP_784960.1 187476936 6264730 428118..430163 1 NC_010645.1 phage protein 430163 6264730 BAV0429 Bordetella avium 197N phage protein YP_784960.1 428118 D 360910 CDS YP_784961.1 187476937 6264731 430175..430768 1 NC_010645.1 phage protein 430768 6264731 BAV0430 Bordetella avium 197N phage protein YP_784961.1 430175 D 360910 CDS YP_784962.1 187476938 6264732 <430765..432375 1 NC_010645.1 phage protein 432375 6264732 BAV0431 Bordetella avium 197N phage protein YP_784962.1 <430765 D 360910 CDS YP_784963.1 187476939 6264733 432362..435751 1 NC_010645.1 hypothetical protein 435751 6264733 BAV0432 Bordetella avium 197N hypothetical protein YP_784963.1 432362 D 360910 CDS YP_784964.1 187476940 6264734 435912..437024 1 NC_010645.1 phage tail fiber protein 437024 6264734 BAV0433 Bordetella avium 197N phage tail fiber protein YP_784964.1 435912 D 360910 CDS YP_784965.1 187476941 6264735 437030..437422 1 NC_010645.1 hypothetical protein 437422 6264735 BAV0434 Bordetella avium 197N hypothetical protein YP_784965.1 437030 D 360910 CDS YP_784966.1 187476942 6264736 437463..438269 1 NC_010645.1 hypothetical protein 438269 6264736 BAV0435 Bordetella avium 197N hypothetical protein YP_784966.1 437463 D 360910 CDS YP_784967.1 187476943 6264737 438274..438489 1 NC_010645.1 hypothetical protein 438489 6264737 BAV0436 Bordetella avium 197N hypothetical protein YP_784967.1 438274 D 360910 CDS YP_784968.1 187476944 6264738 438489..439040 1 NC_010645.1 phage lysozyme 439040 6264738 BAV0437 Bordetella avium 197N phage lysozyme YP_784968.1 438489 D 360910 CDS YP_784969.1 187476945 6264739 complement(439274..440035) 1 NC_010645.1 phage anti-repressor protein 440035 6264739 BAV0438 Bordetella avium 197N phage anti-repressor protein YP_784969.1 439274 R 360910 CDS YP_784970.1 187476946 6264740 complement(440032..440205) 1 NC_010645.1 hypothetical protein 440205 6264740 BAV0438A Bordetella avium 197N hypothetical protein YP_784970.1 440032 R 360910 CDS YP_784971.1 187476947 6264741 complement(440229..440450) 1 NC_010645.1 hypothetical protein 440450 6264741 BAV0438B Bordetella avium 197N hypothetical protein YP_784971.1 440229 R 360910 CDS YP_784972.1 187476948 6264742 complement(440532..440888) 1 NC_010645.1 hypothetical protein 440888 6264742 BAV0439 Bordetella avium 197N hypothetical protein YP_784972.1 440532 R 360910 CDS YP_784973.1 187476949 6264743 complement(440971..441240) 1 NC_010645.1 hypothetical protein 441240 6264743 BAV0439A Bordetella avium 197N hypothetical protein YP_784973.1 440971 R 360910 CDS YP_784974.1 187476950 6264744 complement(441376..442179) 1 NC_010645.1 hypothetical protein 442179 6264744 BAV0440 Bordetella avium 197N hypothetical protein YP_784974.1 441376 R 360910 CDS YP_784975.1 187476951 6264745 complement(442669..442938) 1 NC_010645.1 hypothetical protein 442938 6264745 BAV0441 Bordetella avium 197N hypothetical protein YP_784975.1 442669 R 360910 CDS YP_784976.1 187476952 6264746 complement(442972..443217) 1 NC_010645.1 hypothetical protein 443217 6264746 BAV0442 Bordetella avium 197N hypothetical protein YP_784976.1 442972 R 360910 CDS YP_784977.1 187476953 6264747 complement(443272..443553) 1 NC_010645.1 hypothetical protein 443553 6264747 BAV0443 Bordetella avium 197N hypothetical protein YP_784977.1 443272 R 360910 CDS YP_784978.1 187476954 6267864 complement(443860..444423) 1 NC_010645.1 hypothetical protein 444423 6267864 BAV0444 Bordetella avium 197N hypothetical protein YP_784978.1 443860 R 360910 CDS YP_784979.1 187476955 6264749 complement(444483..>446006) 1 NC_010645.1 catalase >446006 katB 6264749 katB Bordetella avium 197N catalase YP_784979.1 444483 R 360910 CDS YP_784980.1 187476956 6267260 complement(446199..447602) 1 NC_010645.1 Xanthine/uracil permease 447602 6267260 BAV0446 Bordetella avium 197N Xanthine/uracil permease YP_784980.1 446199 R 360910 CDS YP_784981.1 187476957 6264750 447783..449675 1 NC_010645.1 molecular chaperone; heat shock protein 90 449675 htpG 6264750 htpG Bordetella avium 197N heat shock protein 90 YP_784981.1 447783 D 360910 CDS YP_784982.1 187476958 6267216 complement(449747..450367) 1 NC_010645.1 glutathione S-transferase 450367 6267216 BAV0448 Bordetella avium 197N glutathione S-transferase YP_784982.1 449747 R 360910 CDS YP_784983.1 187476959 6264751 complement(450383..450994) 1 NC_010645.1 N-acetyl-anhydromuranmyl-L-alanine amidase 450994 ampD 6264751 ampD Bordetella avium 197N N-acetyl-anhydromuranmyl-L-alanine amidase YP_784983.1 450383 R 360910 CDS YP_784984.1 187476960 6266625 complement(451031..451270) 1 NC_010645.1 hypothetical protein 451270 6266625 BAV0450 Bordetella avium 197N hypothetical protein YP_784984.1 451031 R 360910 CDS YP_784985.1 187476961 6264752 complement(451276..452118) 1 NC_010645.1 cytochrome assembly protein 452118 6264752 BAV0451 Bordetella avium 197N cytochrome assembly protein YP_784985.1 451276 R 360910 CDS YP_784986.1 187476962 6264753 452236..453648 1 NC_010645.1 signal recognition particle protein 453648 ffh 6264753 ffh Bordetella avium 197N signal recognition particle protein YP_784986.1 452236 D 360910 CDS YP_784987.1 187476963 6266972 complement(453730..453930) 1 NC_010645.1 thiamine biosynthesis protein 453930 thiS 6266972 thiS Bordetella avium 197N thiamine biosynthesis protein YP_784987.1 453730 R 360910 CDS YP_784988.1 187476964 6267805 complement(453938..454879) 1 NC_010645.1 proline iminopeptidase 454879 pip 6267805 pip Bordetella avium 197N proline iminopeptidase YP_784988.1 453938 R 360910 CDS YP_784989.1 187476965 6267538 complement(454906..455676) 1 NC_010645.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 455676 trmB 6267538 trmB Bordetella avium 197N tRNA (guanine-N(7)-)-methyltransferase YP_784989.1 454906 R 360910 CDS YP_784990.1 187476966 6267856 complement(456166..457668) 1 NC_010645.1 GntR family transcriptional regulator 457668 6267856 BAV0456 Bordetella avium 197N GntR family transcriptional regulator YP_784990.1 456166 R 360910 CDS YP_784991.1 187476967 6264754 complement(457988..458779) 1 NC_010645.1 N-formylglutamate amidohydrolase 458779 hutG 6264754 hutG Bordetella avium 197N N-formylglutamate amidohydrolase YP_784991.1 457988 R 360910 CDS YP_784992.1 187476968 6267223 complement(459136..460185) 1 NC_010645.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 460185 arcB 6267223 arcB Bordetella avium 197N ornithine cyclodeaminase YP_784992.1 459136 R 360910 CDS YP_784993.1 187476969 6266638 460508..461149 1 NC_010645.1 negative transcriptional regulator of degradative-enzyme production 461149 6266638 BAV0459 Bordetella avium 197N negative transcriptional regulator of degradative-enzyme production YP_784993.1 460508 D 360910 CDS YP_784994.1 187476970 6264755 461446..462744 1 NC_010645.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 462744 6264755 BAV0460 Bordetella avium 197N acetylornithine deacetylase YP_784994.1 461446 D 360910 CDS YP_784995.1 187476971 6264756 462741..463808 1 NC_010645.1 phosphotransferase 463808 6264756 BAV0461 Bordetella avium 197N phosphotransferase YP_784995.1 462741 D 360910 CDS YP_784996.1 187476972 6264757 463805..465181 1 NC_010645.1 decarboxylating aminotransferase 465181 6264757 BAV0462 Bordetella avium 197N decarboxylating aminotransferase YP_784996.1 463805 D 360910 CDS YP_784997.1 187476973 6264758 complement(465404..465829) 1 NC_010645.1 AsnC/Lrp family transcriptional regulator 465829 6264758 BAV0463 Bordetella avium 197N AsnC/Lrp family transcriptional regulator YP_784997.1 465404 R 360910 CDS YP_784998.1 187476974 6264760 complement(466932..467588) 1 NC_010645.1 One of 11 fimbrial subunits; fimbrial subunit 467588 6264760 BAV0465 Bordetella avium 197N fimbrial subunit YP_784998.1 466932 R 360910 CDS YP_784999.1 187476975 6264761 complement(467767..471684) 1 NC_010645.1 serine protease autotransporter 471684 6264761 BAV0466 Bordetella avium 197N serine protease autotransporter YP_784999.1 467767 R 360910 CDS YP_785000.1 187476976 6264762 complement(472024..472620) 1 NC_010645.1 inner membrane enzyme; removes 1-phosphate groups from a number of lipid A precursors which provides a point of attachment for to moieties such as phosphoethanolamine which is attached by HP0022; lipid A 1-phosphatase 472620 6264762 BAV0467 Bordetella avium 197N lipid A 1-phosphatase YP_785000.1 472024 R 360910 CDS YP_785001.1 187476977 6264763 complement(472617..474203) 1 NC_010645.1 attaches phosphoethanolamine to lipid A at the 1 position of the disaccharide backbone in contrast to other gram-negative bacteria; lipid A phosphoethanolamine transferase 474203 6264763 BAV0468 Bordetella avium 197N lipid A phosphoethanolamine transferase YP_785001.1 472617 R 360910 CDS YP_785002.1 187476978 6264764 474353..474862 1 NC_010645.1 This CDS is also similar to its adjacent CDS,BAV0470, 36.875 38dentity (39.0730ngapped) in 160 aa overlap; heat shock lipoprotein 474862 6264764 BAV0469 Bordetella avium 197N heat shock lipoprotein YP_785002.1 474353 D 360910 CDS YP_785003.1 187476979 6264765 474935..475447 1 NC_010645.1 This CDS is also similar to its adjacent CDS,BAV0469, 36.875 38dentity (39.0730ngapped) in 160 aa overlap; heat shock lipoprotein 475447 6264765 BAV0470 Bordetella avium 197N heat shock lipoprotein YP_785003.1 474935 D 360910 CDS YP_785004.1 187476980 6264766 475489..476217 1 NC_010645.1 rhodanese superfamily protein 476217 6264766 BAV0471 Bordetella avium 197N rhodanese superfamily protein YP_785004.1 475489 D 360910 CDS YP_785005.1 187476981 6264767 complement(476289..478364) 1 NC_010645.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 478364 metG 6264767 metG Bordetella avium 197N methionyl-tRNA synthetase YP_785005.1 476289 R 360910 CDS YP_785006.1 187476982 6267338 complement(478540..478812) 1 NC_010645.1 This CDS seems to be present in the Bordetellae only; hypothetical protein 478812 6267338 BAV0473 Bordetella avium 197N hypothetical protein YP_785006.1 478540 R 360910 CDS YP_785007.1 187476983 6264768 478915..480009 1 NC_010645.1 amidase 480009 mrp 6264768 mrp Bordetella avium 197N amidase YP_785007.1 478915 D 360910 CDS YP_785008.1 187476984 6267389 480012..481865 1 NC_010645.1 surface antigen 481865 6267389 BAV0475 Bordetella avium 197N surface antigen YP_785008.1 480012 D 360910 CDS YP_785009.1 187476985 6264769 481862..485482 1 NC_010645.1 hypothetical protein 485482 6264769 BAV0476 Bordetella avium 197N hypothetical protein YP_785009.1 481862 D 360910 CDS YP_785010.1 187476986 6264770 485531..486094 1 NC_010645.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 486094 dcd 6264770 dcd Bordetella avium 197N deoxycytidine triphosphate deaminase YP_785010.1 485531 D 360910 CDS YP_785011.1 187476987 6266867 complement(486095..486610) 1 NC_010645.1 acetyltransferase 486610 6266867 BAV0478 Bordetella avium 197N acetyltransferase YP_785011.1 486095 R 360910 CDS YP_785012.1 187476988 6264771 486690..487145 1 NC_010645.1 hypothetical protein 487145 6264771 BAV0479 Bordetella avium 197N hypothetical protein YP_785012.1 486690 D 360910 CDS YP_785013.1 187476989 6264772 487302..489569 1 NC_010645.1 biodegradative arginine decarboxylase 489569 adiA 6264772 adiA Bordetella avium 197N biodegradative arginine decarboxylase YP_785013.1 487302 D 360910 CDS YP_785014.1 187476990 6266603 489630..490817 1 NC_010645.1 hypothetical protein 490817 6266603 BAV0481 Bordetella avium 197N hypothetical protein YP_785014.1 489630 D 360910 CDS YP_785015.1 187476991 6264773 complement(490814..491887) 1 NC_010645.1 LacI family transcriptional regulator 491887 6264773 BAV0482 Bordetella avium 197N LacI family transcriptional regulator YP_785015.1 490814 R 360910 CDS YP_785016.1 187476992 6264774 492125..493339 1 NC_010645.1 branched-chain amino acid ABC transporter periplasmic binding protein 493339 6264774 BAV0483 Bordetella avium 197N branched-chain amino acid ABC transporter periplasmic binding protein YP_785016.1 492125 D 360910 CDS YP_785017.1 187476993 6264775 493392..494264 1 NC_010645.1 branched-chain amino acid ABC transporter permease 494264 6264775 BAV0484 Bordetella avium 197N branched-chain amino acid ABC transporter permease YP_785017.1 493392 D 360910 CDS YP_785018.1 187476994 6264776 494277..496058 1 NC_010645.1 branched-chain amino acid ABC transporter permease 496058 6264776 BAV0485 Bordetella avium 197N branched-chain amino acid ABC transporter permease YP_785018.1 494277 D 360910 CDS YP_785019.1 187476995 6264777 496042..496746 1 NC_010645.1 branched-chain amino acid ABC transporter ATP-binding protein 496746 6264777 BAV0486 Bordetella avium 197N branched-chain amino acid ABC transporter ATP-binding protein YP_785019.1 496042 D 360910 CDS YP_785020.1 187476996 6264778 496743..497318 1 NC_010645.1 2,4'-dihydroxyacetophenone dioxygenase 497318 dad 6264778 dad Bordetella avium 197N 2,4'-dihydroxyacetophenone dioxygenase YP_785020.1 496743 D 360910 CDS YP_785021.1 187476997 6266847 497332..498099 1 NC_010645.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 498099 fabG 6266847 fabG Bordetella avium 197N 3-ketoacyl-(acyl-carrier-protein) reductase YP_785021.1 497332 D 360910 CDS YP_785022.1 187476998 6264779 <498096..499193 1 NC_010645.1 alcohol dehydrogenase 499193 gldA 6264779 gldA Bordetella avium 197N alcohol dehydrogenase YP_785022.1 <498096 D 360910 CDS YP_785023.1 187476999 6267075 499190..500245 1 NC_010645.1 alcohol dehydrogenase 500245 6267075 BAV0490 Bordetella avium 197N alcohol dehydrogenase YP_785023.1 499190 D 360910 CDS YP_785024.1 187477000 6264780 500603..501703 1 NC_010645.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 501703 gcvT 6264780 gcvT Bordetella avium 197N glycine cleavage system aminomethyltransferase T YP_785024.1 500603 D 360910 CDS YP_785025.1 187477001 6267062 501780..502157 1 NC_010645.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 502157 gcvH 6267062 gcvH Bordetella avium 197N glycine cleavage system protein H YP_785025.1 501780 D 360910 CDS YP_785026.1 187477002 6267060 502209..505076 1 NC_010645.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 505076 gcvP 6267060 gcvP Bordetella avium 197N glycine dehydrogenase YP_785026.1 502209 D 360910 CDS YP_785027.1 187477003 6267061 complement(505172..505996) 1 NC_010645.1 hypothetical protein 505996 6267061 BAV0494 Bordetella avium 197N hypothetical protein YP_785027.1 505172 R 360910 CDS YP_785028.1 187477004 6264781 complement(506233..508119) 1 NC_010645.1 This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.; hypothetical protein 508119 6264781 BAV0495 Bordetella avium 197N hypothetical protein YP_785028.1 506233 R 360910 CDS YP_785029.1 187477005 6264782 complement(508289..509737) 1 NC_010645.1 This CDS is also similar to its adjacent CDS,BAV0495, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.; hypothetical protein 509737 6264782 BAV0496 Bordetella avium 197N hypothetical protein YP_785029.1 508289 R 360910 CDS YP_785030.1 187477006 6264783 complement(509849..511324) 1 NC_010645.1 This CDS is also similar to BAV0502, 31.846 identity (32.84538ngapped) in 493 aa overlap.; hypothetical protein 511324 6264783 BAV0497 Bordetella avium 197N hypothetical protein YP_785030.1 509849 R 360910 CDS YP_785031.1 187477007 6264784 complement(511371..513023) 1 NC_010645.1 ABC transporter ATP-binding protein 513023 6264784 BAV0498 Bordetella avium 197N ABC transporter ATP-binding protein YP_785031.1 511371 R 360910 CDS YP_785032.1 187477008 6264785 complement(513027..513920) 1 NC_010645.1 ABC transporter permease 513920 6264785 BAV0499 Bordetella avium 197N ABC transporter permease YP_785032.1 513027 R 360910 CDS YP_785033.1 187477009 6264786 complement(513923..514864) 1 NC_010645.1 ABC transporter permease 514864 6264786 BAV0500 Bordetella avium 197N ABC transporter permease YP_785033.1 513923 R 360910 CDS YP_785034.1 187477010 6264787 complement(514946..516511) 1 NC_010645.1 extracellular solute-binding protein 516511 6264787 BAV0501 Bordetella avium 197N extracellular solute-binding protein YP_785034.1 514946 R 360910 CDS YP_785035.1 187477011 6264788 complement(516585..518090) 1 NC_010645.1 This CDS is also similar to BAV0497, 31.846 identity (32.84538ngapped) in 493 aa overlap.; hypothetical protein 518090 6264788 BAV0502 Bordetella avium 197N hypothetical protein YP_785035.1 516585 R 360910 CDS YP_785036.1 187477012 6264789 complement(518193..519686) 1 NC_010645.1 methylmalonate-semialdehyde dehydrogenase 519686 mmsA 6264789 mmsA Bordetella avium 197N methylmalonate-semialdehyde dehydrogenase YP_785036.1 518193 R 360910 CDS YP_785037.1 187477013 6267361 complement(519731..521014) 1 NC_010645.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 521014 6267361 BAV0504 Bordetella avium 197N beta alanine--pyruvate transaminase YP_785037.1 519731 R 360910 CDS YP_785038.1 187477014 6264790 521212..522615 1 NC_010645.1 GntR family transcriptional regulator 522615 6264790 BAV0505 Bordetella avium 197N GntR family transcriptional regulator YP_785038.1 521212 D 360910 CDS YP_785039.1 187477015 6264791 complement(522669..523151) 1 NC_010645.1 dihydrofolate reductase 523151 folA 6264791 folA Bordetella avium 197N dihydrofolate reductase YP_785039.1 522669 R 360910 CDS YP_785040.1 187477016 6267024 complement(523154..524125) 1 NC_010645.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 524125 thyA 6267024 thyA Bordetella avium 197N thymidylate synthase YP_785040.1 523154 R 360910 CDS YP_785041.1 187477017 6267810 complement(524169..524600) 1 NC_010645.1 hypothetical protein 524600 6267810 BAV0508 Bordetella avium 197N hypothetical protein YP_785041.1 524169 R 360910 CDS YP_785042.1 187477018 6264792 524728..525375 1 NC_010645.1 hypothetical protein 525375 6264792 BAV0509 Bordetella avium 197N hypothetical protein YP_785042.1 524728 D 360910 CDS YP_785043.1 187477019 6264793 <526137..527240 1 NC_010645.1 O-antigen biosynthesis glycosyltransferase 527240 6264793 BAV0510 Bordetella avium 197N O-antigen biosynthesis glycosyltransferase YP_785043.1 <526137 D 360910 CDS YP_785044.1 187477020 6264794 527330..528604 1 NC_010645.1 polysaccharide biosynthesis protein 528604 wbpO 6264794 wbpO Bordetella avium 197N polysaccharide biosynthesis protein YP_785044.1 527330 D 360910 CDS YP_785045.1 187477021 6267933 528626..529651 1 NC_010645.1 UDP-N-acetylglucosamine C4 epimerase 529651 wbpP 6267933 wbpP Bordetella avium 197N UDP-N-acetylglucosamine C4 epimerase YP_785045.1 528626 D 360910 CDS YP_785046.1 187477022 6267934 529653..531008 1 NC_010645.1 membrane protein 531008 6267934 BAV0513 Bordetella avium 197N membrane protein YP_785046.1 529653 D 360910 CDS YP_785047.1 187477023 6264795 531009..532118 1 NC_010645.1 O-antigen biosynthesis glycosyltranferase 532118 6264795 BAV0514 Bordetella avium 197N O-antigen biosynthesis glycosyltranferase YP_785047.1 531009 D 360910 CDS YP_785048.1 187477024 6264796 532126..534051 1 NC_010645.1 O-antigen biosynthesis aminotransferase 534051 wbpS 6264796 wbpS Bordetella avium 197N O-antigen biosynthesis aminotransferase YP_785048.1 532126 D 360910 CDS YP_785049.1 187477025 6267935 534048..535148 1 NC_010645.1 O-antigen biosynthesis glycosyltransferase 535148 6267935 BAV0516 Bordetella avium 197N O-antigen biosynthesis glycosyltransferase YP_785049.1 534048 D 360910 CDS YP_785050.1 187477026 6264797 535156..536286 1 NC_010645.1 O-antigen biosynthesis glycosyltransferase 536286 wbpT 6264797 wbpT Bordetella avium 197N O-antigen biosynthesis glycosyltransferase YP_785050.1 535156 D 360910 CDS YP_785051.1 187477027 6267936 536283..537416 1 NC_010645.1 O-antigen biosynthesis glycosyltransferase 537416 wbnL 6267936 wbnL Bordetella avium 197N O-antigen biosynthesis glycosyltransferase YP_785051.1 536283 D 360910 CDS YP_785052.1 187477028 6267932 complement(537441..539003) 1 NC_010645.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 539003 pgi 6267932 pgi Bordetella avium 197N glucose-6-phosphate isomerase YP_785052.1 537441 R 360910 CDS YP_785053.1 187477029 6267506 complement(539010..>540392) 1 NC_010645.1 phosphoglucomutase >540392 pgm 6267506 pgm Bordetella avium 197N phosphoglucomutase YP_785053.1 539010 R 360910 CDS YP_785054.1 187477030 6267508 540632..541273 1 NC_010645.1 hypothetical protein 541273 6267508 BAV0521 Bordetella avium 197N hypothetical protein YP_785054.1 540632 D 360910 CDS YP_785055.1 187477031 6264798 541329..542744 1 NC_010645.1 oxidoreductase 542744 6264798 BAV0522 Bordetella avium 197N oxidoreductase YP_785055.1 541329 D 360910 CDS YP_785056.1 187477032 6264799 542749..543435 1 NC_010645.1 two-component system response regulator 543435 6264799 BAV0523 Bordetella avium 197N two-component system response regulator YP_785056.1 542749 D 360910 CDS YP_785057.1 187477033 6264800 543432..544742 1 NC_010645.1 two-component system sensor kinase 544742 6264800 BAV0524 Bordetella avium 197N two-component system sensor kinase YP_785057.1 543432 D 360910 CDS YP_785058.1 187477034 6264801 545001..545735 1 NC_010645.1 GntR family transcriptional regulator 545735 6264801 BAV0525 Bordetella avium 197N GntR family transcriptional regulator YP_785058.1 545001 D 360910 CDS YP_785059.1 187477035 6264802 545818..547740 1 NC_010645.1 sulfatase 547740 6264802 BAV0526 Bordetella avium 197N sulfatase YP_785059.1 545818 D 360910 CDS YP_785060.1 187477036 6264803 complement(547781..549094) 1 NC_010645.1 fumarylacetoacetase 549094 fah 6264803 fah Bordetella avium 197N fumarylacetoacetase YP_785060.1 547781 R 360910 CDS YP_785061.1 187477037 6266951 complement(549148..550446) 1 NC_010645.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase 550446 hmgA 6266951 hmgA Bordetella avium 197N homogentisate 1,2-dioxygenase YP_785061.1 549148 R 360910 CDS YP_785062.1 187477038 6267184 550568..551488 1 NC_010645.1 LysR family transcriptional regulator 551488 6267184 BAV0529 Bordetella avium 197N LysR family transcriptional regulator YP_785062.1 550568 D 360910 CDS YP_785063.1 187477039 6264804 complement(551492..551689) 1 NC_010645.1 hypothetical protein 551689 6264804 BAV0530 Bordetella avium 197N hypothetical protein YP_785063.1 551492 R 360910 CDS YP_785064.1 187477040 6264805 complement(551701..>553359) 1 NC_010645.1 FAD-dependent oxidoreductase >553359 6264805 BAV0531 Bordetella avium 197N FAD-dependent oxidoreductase YP_785064.1 551701 R 360910 CDS YP_785065.1 187477041 6264806 complement(553456..554409) 1 NC_010645.1 cyclase 554409 6264806 BAV0532 Bordetella avium 197N cyclase YP_785065.1 553456 R 360910 CDS YP_785066.1 187477042 6264807 complement(554522..555349) 1 NC_010645.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 555349 fpg 6264807 fpg Bordetella avium 197N formamidopyrimidine-DNA glycosylase YP_785066.1 554522 R 360910 CDS YP_785067.1 187477043 6267029 <555411..557231 1 NC_010645.1 hypothetical protein 557231 6267029 BAV0534 Bordetella avium 197N hypothetical protein YP_785067.1 <555411 D 360910 CDS YP_785068.1 187477044 6264808 557228..557812 1 NC_010645.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 557812 lolB 6264808 lolB Bordetella avium 197N outer membrane lipoprotein LolB YP_785068.1 557228 D 360910 CDS YP_785069.1 187477045 6264809 <557822..558748 1 NC_010645.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 558748 ipk 6264809 ipk Bordetella avium 197N 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_785069.1 <557822 D 360910 CDS YP_785070.1 187477046 6267852 558974..559906 1 NC_010645.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 559906 prs 6267852 prs Bordetella avium 197N ribose-phosphate pyrophosphokinase YP_785070.1 558974 D 360910 CDS YP_785071.1 187477047 6267585 560020..560616 1 NC_010645.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 560616 rplY 6267585 rplY Bordetella avium 197N 50S ribosomal protein L25/general stress protein Ctc YP_785071.1 560020 D 360910 CDS YP_785072.1 187477048 6267695 560665..561288 1 NC_010645.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 561288 pth 6267695 pth Bordetella avium 197N peptidyl-tRNA hydrolase YP_785072.1 560665 D 360910 CDS YP_785073.1 187477049 6267589 561288..562037 1 NC_010645.1 . Seems to be unique to the Bordetellae.; membrane protein 562037 6267589 BAV0540 Bordetella avium 197N membrane protein YP_785073.1 561288 D 360910 CDS YP_785074.1 187477050 6264810 562153..563244 1 NC_010645.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 563244 engD 6264810 engD Bordetella avium 197N GTP-dependent nucleic acid-binding protein EngD YP_785074.1 562153 D 360910 CDS YP_785075.1 187477051 6266925 complement(563605..>564552) 1 NC_010645.1 hypothetical protein >564552 6266925 BAV0542 Bordetella avium 197N hypothetical protein YP_785075.1 563605 R 360910 CDS YP_785076.1 187477052 6264811 complement(564642..567743) 1 NC_010645.1 type I restriction enzyme EcoR124II R protein 567743 hsdR 6264811 hsdR Bordetella avium 197N type I restriction enzyme EcoR124II R protein YP_785076.1 564642 R 360910 CDS YP_785077.1 187477053 6267210 complement(567740..568942) 1 NC_010645.1 anticodon nuclease 568942 prrC 6267210 prrC Bordetella avium 197N anticodon nuclease YP_785077.1 567740 R 360910 CDS YP_785078.1 187477054 6267584 complement(568944..570164) 1 NC_010645.1 type i restriction enzyme EcoR124II specificity protein 570164 hsdS 6267584 hsdS Bordetella avium 197N type i restriction enzyme EcoR124II specificity protein YP_785078.1 568944 R 360910 CDS YP_785079.1 187477055 6267211 complement(570161..571720) 1 NC_010645.1 type i restriction enzyme EcoR124II M protein 571720 hsdM 6267211 hsdM Bordetella avium 197N type i restriction enzyme EcoR124II M protein YP_785079.1 570161 R 360910 CDS YP_785080.1 187477056 6267209 complement(571956..572186) 1 NC_010645.1 hypothetical protein 572186 6267209 BAV0547 Bordetella avium 197N hypothetical protein YP_785080.1 571956 R 360910 CDS YP_785081.1 187477057 6264812 complement(572690..573193) 1 NC_010645.1 MarR family transcriptional regulator 573193 6264812 BAV0548 Bordetella avium 197N MarR family transcriptional regulator YP_785081.1 572690 R 360910 CDS YP_785082.1 187477058 6264813 <573499..573738 1 NC_010645.1 Partial CDS. Seems to be truncated at the N-terminus; hypothetical protein 573738 6264813 BAV0549 Bordetella avium 197N hypothetical protein YP_785082.1 <573499 D 360910 CDS YP_785083.1 187477059 6264814 573802..574725 1 NC_010645.1 2-aminophenol 1,6-dioxygenase subunit beta 574725 amnB 6264814 amnB Bordetella avium 197N 2-aminophenol 1,6-dioxygenase subunit beta YP_785083.1 573802 D 360910 CDS YP_785084.1 187477060 6266622 574760..575572 1 NC_010645.1 2-aminophenol 1,6-dioxygenase subunit alpha 575572 amnA 6266622 amnA Bordetella avium 197N 2-aminophenol 1,6-dioxygenase subunit alpha YP_785084.1 574760 D 360910 CDS YP_785085.1 187477061 6266621 <575626..577107 1 NC_010645.1 2-aminomuconic semialdehyde dehydrogenase 577107 amnC 6266621 amnC Bordetella avium 197N 2-aminomuconic semialdehyde dehydrogenase YP_785085.1 <575626 D 360910 CDS YP_785086.1 187477062 6266623 577112..577549 1 NC_010645.1 2-aminomuconate deaminase 577549 amnE 6266623 amnE Bordetella avium 197N 2-aminomuconate deaminase YP_785086.1 577112 D 360910 CDS YP_785087.1 187477063 6266624 complement(577652..578815) 1 NC_010645.1 calcium/proton antiporter 578815 6266624 BAV0554 Bordetella avium 197N calcium/proton antiporter YP_785087.1 577652 R 360910 CDS YP_785088.1 187477064 6264815 579418..580266 1 NC_010645.1 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 580266 6264815 BAV0555 Bordetella avium 197N 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase YP_785088.1 579418 D 360910 CDS YP_785089.1 187477065 6264816 complement(580313..581728) 1 NC_010645.1 outer membrane protein 581728 6264816 BAV0556 Bordetella avium 197N outer membrane protein YP_785089.1 580313 R 360910 CDS YP_785090.1 187477066 6264817 complement(581739..581939) 1 NC_010645.1 hypothetical protein 581939 6264817 BAV0557 Bordetella avium 197N hypothetical protein YP_785090.1 581739 R 360910 CDS YP_785091.1 187477067 6264818 complement(582012..582410) 1 NC_010645.1 hypothetical protein 582410 6264818 BAV0558 Bordetella avium 197N hypothetical protein YP_785091.1 582012 R 360910 CDS YP_785092.1 187477068 6264819 582825..585305 1 NC_010645.1 hypothetical protein 585305 6264819 BAV0559 Bordetella avium 197N hypothetical protein YP_785092.1 582825 D 360910 CDS YP_785093.1 187477069 6264820 585302..585706 1 NC_010645.1 hypothetical protein 585706 6264820 BAV0560 Bordetella avium 197N hypothetical protein YP_785093.1 585302 D 360910 CDS YP_785094.1 187477070 6264821 complement(585713..586918) 1 NC_010645.1 benzoate transport protein 586918 benE 6264821 benE Bordetella avium 197N benzoate transport protein YP_785094.1 585713 R 360910 CDS YP_785095.1 187477071 6266696 complement(586915..587169) 1 NC_010645.1 ferredoxin 587169 6266696 BAV0562 Bordetella avium 197N ferredoxin YP_785095.1 586915 R 360910 CDS YP_785096.1 187477072 6264822 complement(587221..587724) 1 NC_010645.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 587724 coaD 6264822 coaD Bordetella avium 197N phosphopantetheine adenylyltransferase YP_785096.1 587221 R 360910 CDS YP_785097.1 187477073 6266798 complement(587746..588366) 1 NC_010645.1 hypothetical protein 588366 6266798 BAV0564 Bordetella avium 197N hypothetical protein YP_785097.1 587746 R 360910 CDS YP_785098.1 187477074 6264823 <588769..589779 1 NC_010645.1 cell division protein 589779 ftsY 6264823 ftsY Bordetella avium 197N cell division protein YP_785098.1 <588769 D 360910 CDS YP_785099.1 187477075 6267043 complement(589833..591419) 1 NC_010645.1 adenylate cyclase 591419 6267043 BAV0566 Bordetella avium 197N adenylate cyclase YP_785099.1 589833 R 360910 CDS YP_785100.1 187477076 6264824 complement(591687..592484) 1 NC_010645.1 IclR family transcriptional regulator 592484 6264824 BAV0567 Bordetella avium 197N IclR family transcriptional regulator YP_785100.1 591687 R 360910 CDS YP_785101.1 187477077 6264825 complement(join(592495..592602,592604..592777)) 1 NC_010645.1 hypothetical protein 592777 6264825 BAV0568 Bordetella avium 197N hypothetical protein YP_785101.1 592495 R 360910 CDS YP_785102.1 187477078 6264826 593118..594284 1 NC_010645.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 594284 ribB 6264826 ribB Bordetella avium 197N bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein YP_785102.1 593118 D 360910 CDS YP_785103.1 187477079 6267651 594294..594815 1 NC_010645.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 594815 ribH 6267651 ribH Bordetella avium 197N 6,7-dimethyl-8-ribityllumazine synthase YP_785103.1 594294 D 360910 CDS YP_785104.1 187477080 6267655 <594823..595293 1 NC_010645.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 595293 nusB 6267655 nusB Bordetella avium 197N transcription antitermination protein NusB YP_785104.1 <594823 D 360910 CDS YP_785105.1 187477081 6267448 <595309..596277 1 NC_010645.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 596277 thiL 6267448 thiL Bordetella avium 197N thiamine monophosphate kinase YP_785105.1 <595309 D 360910 CDS YP_785106.1 187477082 6267804 596367..596894 1 NC_010645.1 phosphatidylglycerophosphatase 596894 pgpA 6267804 pgpA Bordetella avium 197N phosphatidylglycerophosphatase YP_785106.1 596367 D 360910 CDS YP_785107.1 187477083 6267509 596891..597457 1 NC_010645.1 hypothetical protein 597457 6267509 BAV0574 Bordetella avium 197N hypothetical protein YP_785107.1 596891 D 360910 CDS YP_785108.1 187477084 6264827 complement(597473..598291) 1 NC_010645.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 598291 pyrF 6264827 pyrF Bordetella avium 197N orotidine 5'-phosphate decarboxylase YP_785108.1 597473 R 360910 CDS YP_785109.1 187477085 6267613 complement(598297..599610) 1 NC_010645.1 NADH dehydrogenase 599610 ndh 6267613 ndh Bordetella avium 197N NADH dehydrogenase YP_785109.1 598297 R 360910 CDS YP_785110.1 187477086 6267418 complement(599681..600073) 1 NC_010645.1 diacylglycerol kinase 600073 dgkA 6267418 dgkA Bordetella avium 197N diacylglycerol kinase YP_785110.1 599681 R 360910 CDS YP_785111.1 187477087 6266878 complement(600275..601174) 1 NC_010645.1 serum resistance protein; BrkB 601174 brkB 6266878 brkB Bordetella avium 197N BrkB YP_785111.1 600275 R 360910 CDS YP_785112.1 187477088 6266740 complement(601336..602976) 1 NC_010645.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 602976 groEL 6266740 groEL Bordetella avium 197N chaperonin GroEL YP_785112.1 601336 R 360910 CDS YP_785113.1 187477089 6266810 complement(603010..603297) 1 NC_010645.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 603297 groES 6266810 groES Bordetella avium 197N co-chaperonin GroES YP_785113.1 603010 R 360910 CDS YP_785114.1 187477090 6266809 complement(604039..604842) 1 NC_010645.1 hypothetical protein 604842 6266809 BAV0581 Bordetella avium 197N hypothetical protein YP_785114.1 604039 R 360910 CDS YP_785115.1 187477091 6264829 606875..607699 1 NC_010645.1 AraC family transcriptional regulator 607699 6264829 BAV0583 Bordetella avium 197N AraC family transcriptional regulator YP_785115.1 606875 D 360910 CDS YP_785116.1 187477092 6264830 607899..608258 1 NC_010645.1 transcriptional regulator 608258 arsR 6264830 arsR Bordetella avium 197N transcriptional regulator YP_785116.1 607899 D 360910 CDS YP_785117.1 187477093 6266666 608255..608584 1 NC_010645.1 hypothetical protein 608584 6266666 BAV0585 Bordetella avium 197N hypothetical protein YP_785117.1 608255 D 360910 CDS YP_785118.1 187477094 6264831 608614..609036 1 NC_010645.1 arsenate reductase 609036 arsC 6264831 arsC Bordetella avium 197N arsenate reductase YP_785118.1 608614 D 360910 CDS YP_785119.1 187477095 6266664 <609029..609751 1 NC_010645.1 ArsH protein ( NADPH-dependent FMN reductase) 609751 arsH 6266664 arsH Bordetella avium 197N ArsH protein ( NADPH-dependent FMN reductase) YP_785119.1 <609029 D 360910 CDS YP_785120.1 187477096 6266665 complement(609986..611488) 1 NC_010645.1 hypothetical protein 611488 6266665 BAV0588 Bordetella avium 197N hypothetical protein YP_785120.1 609986 R 360910 CDS YP_785121.1 187477097 6264832 complement(611485..612471) 1 NC_010645.1 hypothetical protein 612471 6264832 BAV0589 Bordetella avium 197N hypothetical protein YP_785121.1 611485 R 360910 CDS YP_785122.1 187477098 6264833 612565..613920 1 NC_010645.1 hypothetical protein 613920 6264833 BAV0590 Bordetella avium 197N hypothetical protein YP_785122.1 612565 D 360910 CDS YP_785123.1 187477099 6264834 613945..614814 1 NC_010645.1 transcriptional regulator 614814 6264834 BAV0591 Bordetella avium 197N transcriptional regulator YP_785123.1 613945 D 360910 CDS YP_785124.1 187477100 6264835 615012..615167 1 NC_010645.1 hypothetical protein 615167 6264835 BAV0592 Bordetella avium 197N hypothetical protein YP_785124.1 615012 D 360910 CDS YP_785125.1 187477101 6264836 615527..616357 1 NC_010645.1 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase 616357 bpdF 6264836 bpdF Bordetella avium 197N 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase YP_785125.1 615527 D 360910 CDS YP_785126.1 187477102 6266723 616521..617426 1 NC_010645.1 2,3-dihydroxybiphenyl 1,2-dioxygenase 617426 bpdE 6266723 bpdE Bordetella avium 197N 2,3-dihydroxybiphenyl 1,2-dioxygenase YP_785126.1 616521 D 360910 CDS YP_785127.1 187477103 6266722 617492..618664 1 NC_010645.1 pigment production hydroxylase 618664 6266722 BAV0595 Bordetella avium 197N pigment production hydroxylase YP_785127.1 617492 D 360910 CDS YP_785128.1 187477104 6264837 618672..619853 1 NC_010645.1 monooxygenase/oxidoreductase 619853 6264837 BAV0596 Bordetella avium 197N monooxygenase/oxidoreductase YP_785128.1 618672 D 360910 CDS YP_785129.1 187477105 6264838 619924..620814 1 NC_010645.1 LysR family transcriptional regulator 620814 6264838 BAV0597 Bordetella avium 197N LysR family transcriptional regulator YP_785129.1 619924 D 360910 CDS YP_785130.1 187477106 6264839 <620993..621793 1 NC_010645.1 catalyzes the formation of 2-keto-4-hydroxypentanoic acid from 2-hydroxypentadienoic acid; 2-keto-4-pentenoate hydratase 621793 mhpD 6264839 mhpD Bordetella avium 197N 2-keto-4-pentenoate hydratase YP_785130.1 <620993 D 360910 CDS YP_785131.1 187477107 6266727 621855..622805 1 NC_010645.1 catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 622805 bphG 6266727 bphG Bordetella avium 197N acetaldehyde dehydrogenase YP_785131.1 621855 D 360910 CDS YP_785132.1 187477108 6266729 622805..623854 1 NC_010645.1 4-hydroxy-2-oxovalerate aldolase 623854 bphF 6266729 bphF Bordetella avium 197N 4-hydroxy-2-oxovalerate aldolase YP_785132.1 622805 D 360910 CDS YP_785133.1 187477109 6266728 <623861..624307 1 NC_010645.1 hypothetical protein 624307 6266728 BAV0601 Bordetella avium 197N hypothetical protein YP_785133.1 <623861 D 360910 CDS YP_785134.1 187477110 6264840 624594..625994 1 NC_010645.1 metabolite transporter 625994 6264840 BAV0602 Bordetella avium 197N metabolite transporter YP_785134.1 624594 D 360910 CDS YP_785135.1 187477111 6264841 626088..627227 1 NC_010645.1 outer membrane porin 627227 6264841 BAV0603 Bordetella avium 197N outer membrane porin YP_785135.1 626088 D 360910 CDS YP_785136.1 187477112 6264842 627281..627748 1 NC_010645.1 membrane protein 627748 6264842 BAV0604 Bordetella avium 197N membrane protein YP_785136.1 627281 D 360910 CDS YP_785137.1 187477113 6264843 627789..627974 1 NC_010645.1 membrane protein 627974 6264843 BAV0605 Bordetella avium 197N membrane protein YP_785137.1 627789 D 360910 CDS YP_785138.1 187477114 6264844 628026..629531 1 NC_010645.1 catabolic enzyme 629531 6264844 BAV0606 Bordetella avium 197N catabolic enzyme YP_785138.1 628026 D 360910 CDS YP_785139.1 187477115 6264845 629628..630326 1 NC_010645.1 TetR family transcriptional regulator 630326 6264845 BAV0607 Bordetella avium 197N TetR family transcriptional regulator YP_785139.1 629628 D 360910 CDS YP_785140.1 187477116 6264846 630522..631436 1 NC_010645.1 short-chain dehydrogenase 631436 6264846 BAV0608 Bordetella avium 197N short-chain dehydrogenase YP_785140.1 630522 D 360910 CDS YP_785141.1 187477117 6264847 631433..632659 1 NC_010645.1 iron-sulfur containing oxygenase 632659 6264847 BAV0609 Bordetella avium 197N iron-sulfur containing oxygenase YP_785141.1 631433 D 360910 CDS YP_785142.1 187477118 6264848 632663..633835 1 NC_010645.1 acyl-CoA dehydrogenase 633835 6264848 BAV0610 Bordetella avium 197N acyl-CoA dehydrogenase YP_785142.1 632663 D 360910 CDS YP_785143.1 187477119 6264849 633849..634985 1 NC_010645.1 CoA-transferase 634985 6264849 BAV0611 Bordetella avium 197N CoA-transferase YP_785143.1 633849 D 360910 CDS YP_785144.1 187477120 6264850 635035..636021 1 NC_010645.1 4,5-dihydroxyphthalate decarboxylase 636021 phtD 6264850 phtD Bordetella avium 197N 4,5-dihydroxyphthalate decarboxylase YP_785144.1 635035 D 360910 CDS YP_785145.1 187477121 6267537 <636029..637042 1 NC_010645.1 1-hydroxy-2-naphthoate dioxygenase 637042 phnG 6267537 phnG Bordetella avium 197N 1-hydroxy-2-naphthoate dioxygenase YP_785145.1 <636029 D 360910 CDS YP_785146.1 187477122 6267527 637054..637908 1 NC_010645.1 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 637908 6267527 BAV0614 Bordetella avium 197N 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase YP_785146.1 637054 D 360910 CDS YP_785147.1 187477123 6264851 637921..638889 1 NC_010645.1 oxidoreductase 638889 6264851 BAV0615 Bordetella avium 197N oxidoreductase YP_785147.1 637921 D 360910 CDS YP_785148.1 187477124 6264852 complement(639268..639729) 1 NC_010645.1 membrane protein 639729 6264852 BAV0616 Bordetella avium 197N membrane protein YP_785148.1 639268 R 360910 CDS YP_785149.1 187477125 6264853 complement(639730..639990) 1 NC_010645.1 hypothetical protein 639990 6264853 BAV0617 Bordetella avium 197N hypothetical protein YP_785149.1 639730 R 360910 CDS YP_785150.1 187477126 6264854 640000..640437 1 NC_010645.1 hypothetical protein 640437 6264854 BAV0618 Bordetella avium 197N hypothetical protein YP_785150.1 640000 D 360910 CDS YP_785151.1 187477127 6264855 640452..640958 1 NC_010645.1 membrane protein 640958 6264855 BAV0619 Bordetella avium 197N membrane protein YP_785151.1 640452 D 360910 CDS YP_785152.1 187477128 6264856 complement(641108..642133) 1 NC_010645.1 hypothetical protein 642133 6264856 BAV0620 Bordetella avium 197N hypothetical protein YP_785152.1 641108 R 360910 CDS YP_785153.1 187477129 6264857 complement(642188..642955) 1 NC_010645.1 short chain dehydrogenase/reductase 642955 6264857 BAV0621 Bordetella avium 197N short chain dehydrogenase/reductase YP_785153.1 642188 R 360910 CDS YP_785154.1 187477130 6264858 complement(642952..643671) 1 NC_010645.1 short-chain dehydrogenase/reductase 643671 6264858 BAV0622 Bordetella avium 197N short-chain dehydrogenase/reductase YP_785154.1 642952 R 360910 CDS YP_785155.1 187477131 6264859 complement(643680..644576) 1 NC_010645.1 carboxyvinyl-carboxyphosphonate phosphorylmutase 644576 6264859 BAV0623 Bordetella avium 197N carboxyvinyl-carboxyphosphonate phosphorylmutase YP_785155.1 643680 R 360910 CDS YP_785156.1 187477132 6264860 complement(644598..645311) 1 NC_010645.1 GntR family transcriptional regulator 645311 6264860 BAV0624 Bordetella avium 197N GntR family transcriptional regulator YP_785156.1 644598 R 360910 CDS YP_785157.1 187477133 6264861 645573..648290 1 NC_010645.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 648290 acnA1 6264861 acnA1 Bordetella avium 197N aconitate hydratase YP_785157.1 645573 D 360910 CDS YP_785158.1 187477134 6266583 648321..649682 1 NC_010645.1 hydantoinase 649682 6266583 BAV0626 Bordetella avium 197N hydantoinase YP_785158.1 648321 D 360910 CDS YP_785159.1 187477135 6264862 649716..650444 1 NC_010645.1 isochorismatase hydrolase 650444 6264862 BAV0627 Bordetella avium 197N isochorismatase hydrolase YP_785159.1 649716 D 360910 CDS YP_785160.1 187477136 6264863 650454..651449 1 NC_010645.1 hypothetical protein 651449 6264863 BAV0628 Bordetella avium 197N hypothetical protein YP_785160.1 650454 D 360910 CDS YP_785161.1 187477137 6264864 complement(651575..654016) 1 NC_010645.1 copper-transporting P-type ATPase 654016 actP 6264864 actP Bordetella avium 197N copper-transporting P-type ATPase YP_785161.1 651575 R 360910 CDS YP_785162.1 187477138 6266595 654431..655144 1 NC_010645.1 hypothetical protein 655144 6266595 BAV0630 Bordetella avium 197N hypothetical protein YP_785162.1 654431 D 360910 CDS YP_785163.1 187477139 6264865 complement(655368..656201) 1 NC_010645.1 oxidoreductase 656201 6264865 BAV0631 Bordetella avium 197N oxidoreductase YP_785163.1 655368 R 360910 CDS YP_785164.1 187477140 6264866 complement(656287..656625) 1 NC_010645.1 membrane protein 656625 6264866 BAV0632 Bordetella avium 197N membrane protein YP_785164.1 656287 R 360910 CDS YP_785165.1 187477141 6264867 complement(656622..658502) 1 NC_010645.1 membrane protein 658502 6264867 BAV0633 Bordetella avium 197N membrane protein YP_785165.1 656622 R 360910 CDS YP_785166.1 187477142 6264868 complement(658505..660967) 1 NC_010645.1 ferric-siderophore receptor 660967 6264868 BAV0634 Bordetella avium 197N ferric-siderophore receptor YP_785166.1 658505 R 360910 CDS YP_785167.1 187477143 6264869 complement(661079..>662035) 1 NC_010645.1 regulator of iron dicitrate transport >662035 fecR 6264869 fecR Bordetella avium 197N regulator of iron dicitrate transport YP_785167.1 661079 R 360910 CDS YP_785168.1 187477144 6266970 complement(662032..662727) 1 NC_010645.1 RNA polymerase sigma factor 662727 fecI 6266970 fecI Bordetella avium 197N RNA polymerase sigma factor YP_785168.1 662032 R 360910 CDS YP_785169.1 187477145 6266968 complement(662856..663350) 1 NC_010645.1 hypothetical protein 663350 6266968 BAV0637 Bordetella avium 197N hypothetical protein YP_785169.1 662856 R 360910 CDS YP_785170.1 187477146 6264870 complement(663516..664322) 1 NC_010645.1 esterase 664322 6264870 BAV0638 Bordetella avium 197N esterase YP_785170.1 663516 R 360910 CDS YP_785171.1 187477147 6264871 complement(664322..665623) 1 NC_010645.1 Almost identical to BAV2830 (98.8 38d); O-acetylhomoserine sulfhydrylase 665623 cysD1 6264871 cysD1 Bordetella avium 197N O-acetylhomoserine sulfhydrylase YP_785171.1 664322 R 360910 CDS YP_785172.1 187477148 6266840 complement(665994..667391) 1 NC_010645.1 chloride-channel protein 667391 6266840 BAV0640 Bordetella avium 197N chloride-channel protein YP_785172.1 665994 R 360910 CDS YP_785173.1 187477149 6264872 complement(667620..667859) 1 NC_010645.1 lipoprotein 667859 6264872 BAV0641 Bordetella avium 197N lipoprotein YP_785173.1 667620 R 360910 CDS YP_785174.1 187477150 6264873 complement(668074..668853) 1 NC_010645.1 short chain dehydrogenase/reductase 668853 6264873 BAV0642 Bordetella avium 197N short chain dehydrogenase/reductase YP_785174.1 668074 R 360910 CDS YP_785175.1 187477151 6264874 complement(668850..669860) 1 NC_010645.1 ABC transporter substrate binding protein 669860 6264874 BAV0643 Bordetella avium 197N ABC transporter substrate binding protein YP_785175.1 668850 R 360910 CDS YP_785176.1 187477152 6264875 complement(669857..670633) 1 NC_010645.1 ABC transporter permease 670633 6264875 BAV0644 Bordetella avium 197N ABC transporter permease YP_785176.1 669857 R 360910 CDS YP_785177.1 187477153 6264876 complement(670630..671370) 1 NC_010645.1 ABC transporter ATP-binding protein 671370 6264876 BAV0645 Bordetella avium 197N ABC transporter ATP-binding protein YP_785177.1 670630 R 360910 CDS YP_785178.1 187477154 6264877 complement(671367..672830) 1 NC_010645.1 acyl-CoA reductase 672830 6264877 BAV0646 Bordetella avium 197N acyl-CoA reductase YP_785178.1 671367 R 360910 CDS YP_785179.1 187477155 6264878 complement(672827..673933) 1 NC_010645.1 acyl-protein synthetase 673933 6264878 BAV0647 Bordetella avium 197N acyl-protein synthetase YP_785179.1 672827 R 360910 CDS YP_785180.1 187477156 6264879 674113..674697 1 NC_010645.1 ribosomal-protein-alanine acetyltransferase 674697 rimJ 6264879 rimJ Bordetella avium 197N ribosomal-protein-alanine acetyltransferase YP_785180.1 674113 D 360910 CDS YP_785181.1 187477157 6267659 <674920..675945 1 NC_010645.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 675945 kdgT 6267659 kdgT Bordetella avium 197N 2-keto-3-deoxygluconate permease YP_785181.1 <674920 D 360910 CDS YP_785182.1 187477158 6267263 <675942..677156 1 NC_010645.1 hypothetical protein 677156 6267263 BAV0650 Bordetella avium 197N hypothetical protein YP_785182.1 <675942 D 360910 CDS YP_785183.1 187477159 6264880 677153..678199 1 NC_010645.1 Also similar to BAV2168, (48.318 38d.); 4-hydroxythreonine-4-phosphate dehydrogenase 678199 pdxA1 6264880 pdxA1 Bordetella avium 197N 4-hydroxythreonine-4-phosphate dehydrogenase YP_785183.1 677153 D 360910 CDS YP_785184.1 187477160 6267493 678208..679113 1 NC_010645.1 GntR family transcriptional regulator 679113 6267493 BAV0652 Bordetella avium 197N GntR family transcriptional regulator YP_785184.1 678208 D 360910 CDS YP_785185.1 187477161 6264881 complement(679312..680046) 1 NC_010645.1 GntR family transcriptional regulator 680046 6264881 BAV0653 Bordetella avium 197N GntR family transcriptional regulator YP_785185.1 679312 R 360910 CDS YP_785186.1 187477162 6264882 680253..681107 1 NC_010645.1 hydrolase 681107 6264882 BAV0654 Bordetella avium 197N hydrolase YP_785186.1 680253 D 360910 CDS YP_785187.1 187477163 6264883 681107..682102 1 NC_010645.1 cyclodeaminase 682102 6264883 BAV0655 Bordetella avium 197N cyclodeaminase YP_785187.1 681107 D 360910 CDS YP_785188.1 187477164 6264884 682161..683261 1 NC_010645.1 dioxygenase 683261 6264884 BAV0656 Bordetella avium 197N dioxygenase YP_785188.1 682161 D 360910 CDS YP_785189.1 187477165 6264885 683276..683773 1 NC_010645.1 oxygenase small subunit 683773 6264885 BAV0657 Bordetella avium 197N oxygenase small subunit YP_785189.1 683276 D 360910 CDS YP_785190.1 187477166 6264886 683788..685077 1 NC_010645.1 oxygenase large subunit 685077 6264886 BAV0658 Bordetella avium 197N oxygenase large subunit YP_785190.1 683788 D 360910 CDS YP_785191.1 187477167 6264887 685080..685409 1 NC_010645.1 ferredoxin 685409 6264887 BAV0659 Bordetella avium 197N ferredoxin YP_785191.1 685080 D 360910 CDS YP_785192.1 187477168 6264888 685406..686632 1 NC_010645.1 ferredoxin reductase 686632 6264888 BAV0660 Bordetella avium 197N ferredoxin reductase YP_785192.1 685406 D 360910 CDS YP_785193.1 187477169 6264889 686629..687042 1 NC_010645.1 hypothetical protein 687042 6264889 BAV0661 Bordetella avium 197N hypothetical protein YP_785193.1 686629 D 360910 CDS YP_785194.1 187477170 6264890 687073..687879 1 NC_010645.1 2-oxo-hept-3-ene-1,7-dioate hydratase 687879 hpaH 6264890 hpaH Bordetella avium 197N 2-oxo-hept-3-ene-1,7-dioate hydratase YP_785194.1 687073 D 360910 CDS YP_785195.1 187477171 6267199 687885..688682 1 NC_010645.1 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 688682 hpaI 6267199 hpaI Bordetella avium 197N 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_785195.1 687885 D 360910 CDS YP_785196.1 187477172 6267201 688765..689742 1 NC_010645.1 hypothetical protein 689742 6267201 BAV0664 Bordetella avium 197N hypothetical protein YP_785196.1 688765 D 360910 CDS YP_785197.1 187477173 6264891 complement(689881..690249) 1 NC_010645.1 hypothetical protein 690249 6264891 BAV0665 Bordetella avium 197N hypothetical protein YP_785197.1 689881 R 360910 CDS YP_785198.1 187477174 6264892 complement(690258..690500) 1 NC_010645.1 lipoprotein 690500 6264892 BAV0666 Bordetella avium 197N lipoprotein YP_785198.1 690258 R 360910 CDS YP_785199.1 187477175 6264893 complement(690493..690747) 1 NC_010645.1 hypothetical protein 690747 6264893 BAV0667 Bordetella avium 197N hypothetical protein YP_785199.1 690493 R 360910 CDS YP_785200.1 187477176 6264894 complement(690869..691783) 1 NC_010645.1 LysR family transcriptional regulator 691783 6264894 BAV0668 Bordetella avium 197N LysR family transcriptional regulator YP_785200.1 690869 R 360910 CDS YP_785201.1 187477177 6264895 692108..693256 1 NC_010645.1 pyridoxal phosphate binding aldolase 693256 6264895 BAV0669 Bordetella avium 197N pyridoxal phosphate binding aldolase YP_785201.1 692108 D 360910 CDS YP_785202.1 187477178 6264896 693262..693345 1 NC_010645.1 hypothetical protein 693345 6264896 BAV0669A Bordetella avium 197N hypothetical protein YP_785202.1 693262 D 360910 CDS YP_785203.1 187477179 6264897 <693530..694918 1 NC_010645.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 694918 dbpA 6264897 dbpA Bordetella avium 197N ATP-dependent RNA helicase DbpA YP_785203.1 <693530 D 360910 CDS YP_785204.1 187477180 6266863 695002..695520 1 NC_010645.1 acetyltransferase 695520 6266863 BAV0671 Bordetella avium 197N acetyltransferase YP_785204.1 695002 D 360910 CDS YP_785205.1 187477181 6264898 complement(695563..696552) 1 NC_010645.1 D-isomer specific 2-hydroxyacid dehydrogenase 696552 6264898 BAV0672 Bordetella avium 197N D-isomer specific 2-hydroxyacid dehydrogenase YP_785205.1 695563 R 360910 CDS YP_785206.1 187477182 6264899 complement(696552..697478) 1 NC_010645.1 LysR family transcriptional regulator 697478 6264899 BAV0673 Bordetella avium 197N LysR family transcriptional regulator YP_785206.1 696552 R 360910 CDS YP_785207.1 187477183 6264900 697722..698723 1 NC_010645.1 N-carbamoyl-D-amino acid hydrolase 698723 6264900 BAV0674 Bordetella avium 197N N-carbamoyl-D-amino acid hydrolase YP_785207.1 697722 D 360910 CDS YP_785208.1 187477184 6264901 complement(698784..699701) 1 NC_010645.1 LysR family transcriptional regulator 699701 6264901 BAV0675 Bordetella avium 197N LysR family transcriptional regulator YP_785208.1 698784 R 360910 CDS YP_785209.1 187477185 6264902 699942..701441 1 NC_010645.1 catalyzes the hydrolytic cleavage of imides that range from linear to heterocyclic and that include hydantoins, dihydropyrimidines, and phthalimides; dihydropyrimidinase 701441 6264902 BAV0676 Bordetella avium 197N dihydropyrimidinase YP_785209.1 699942 D 360910 CDS YP_785210.1 187477186 6264903 701489..702343 1 NC_010645.1 amino acid ABC transporter solute-binding protein 702343 6264903 BAV0677 Bordetella avium 197N amino acid ABC transporter solute-binding protein YP_785210.1 701489 D 360910 CDS YP_785211.1 187477187 6264904 702363..703115 1 NC_010645.1 amino acid ABC transporter ATP-binding protein 703115 6264904 BAV0678 Bordetella avium 197N amino acid ABC transporter ATP-binding protein YP_785211.1 702363 D 360910 CDS YP_785212.1 187477188 6264905 703115..703792 1 NC_010645.1 amino acid ABC transporter permease 703792 6264905 BAV0679 Bordetella avium 197N amino acid ABC transporter permease YP_785212.1 703115 D 360910 CDS YP_785213.1 187477189 6264906 703803..704471 1 NC_010645.1 amino acid ABC transporter permease 704471 6264906 BAV0680 Bordetella avium 197N amino acid ABC transporter permease YP_785213.1 703803 D 360910 CDS YP_785214.1 187477190 6264907 704562..705506 1 NC_010645.1 dihydrodipicolinate synthase 705506 6264907 BAV0681 Bordetella avium 197N dihydrodipicolinate synthase YP_785214.1 704562 D 360910 CDS YP_785215.1 187477191 6264908 705530..706186 1 NC_010645.1 hydantoin racemase 706186 6264908 BAV0682 Bordetella avium 197N hydantoin racemase YP_785215.1 705530 D 360910 CDS YP_785216.1 187477192 6264909 <706180..707616 1 NC_010645.1 FAD dependent oxidase 707616 6264909 BAV0683 Bordetella avium 197N FAD dependent oxidase YP_785216.1 <706180 D 360910 CDS YP_785217.1 187477193 6264910 707641..708426 1 NC_010645.1 short chain dehydrogenase 708426 6264910 BAV0684 Bordetella avium 197N short chain dehydrogenase YP_785217.1 707641 D 360910 CDS YP_785218.1 187477194 6264911 complement(708536..>709150) 1 NC_010645.1 amino acid efflux protein >709150 6264911 BAV0685 Bordetella avium 197N amino acid efflux protein YP_785218.1 708536 R 360910 CDS YP_785219.1 187477195 6264912 709267..709719 1 NC_010645.1 AsnC/Lrp family transcriptional regulator 709719 6264912 BAV0686 Bordetella avium 197N AsnC/Lrp family transcriptional regulator YP_785219.1 709267 D 360910 CDS YP_785220.1 187477196 6264913 709931..710704 1 NC_010645.1 trans-aconitate 2-methyltransferase 710704 tam 6264913 tam Bordetella avium 197N trans-aconitate 2-methyltransferase YP_785220.1 709931 D 360910 CDS YP_785221.1 187477197 6267787 complement(710708..711757) 1 NC_010645.1 NADP(H)-dependent aldo-keto reductase 711757 tas 6267787 tas Bordetella avium 197N NADP(H)-dependent aldo-keto reductase YP_785221.1 710708 R 360910 CDS YP_785222.1 187477198 6267788 complement(711888..712283) 1 NC_010645.1 lipoprotein 712283 6267788 BAV0689 Bordetella avium 197N lipoprotein YP_785222.1 711888 R 360910 CDS YP_785223.1 187477199 6264914 712433..712759 1 NC_010645.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 712759 phhB 6264914 phhB Bordetella avium 197N pterin-4-alpha-carbinolamine dehydratase YP_785223.1 712433 D 360910 CDS YP_785224.1 187477200 6264915 complement(712762..713487) 1 NC_010645.1 membrane protein 713487 6264915 BAV0691 Bordetella avium 197N membrane protein YP_785224.1 712762 R 360910 CDS YP_785225.1 187477201 6264916 complement(713630..714304) 1 NC_010645.1 nucleotidyl transferase 714304 6264916 BAV0692 Bordetella avium 197N nucleotidyl transferase YP_785225.1 713630 R 360910 CDS YP_785226.1 187477202 6264917 complement(714304..715335) 1 NC_010645.1 hypothetical protein 715335 6264917 BAV0693 Bordetella avium 197N hypothetical protein YP_785226.1 714304 R 360910 CDS YP_785227.1 187477203 6264918 <715508..717901 1 NC_010645.1 organic solvent tolerance protein 717901 imp 6264918 imp Bordetella avium 197N organic solvent tolerance protein YP_785227.1 <715508 D 360910 CDS YP_785228.1 187477204 6267243 717898..719418 1 NC_010645.1 peptidyl-prolyl cis-trans isomerase 719418 surA 6267243 surA Bordetella avium 197N peptidyl-prolyl cis-trans isomerase YP_785228.1 717898 D 360910 CDS YP_785229.1 187477205 6267783 719433..720221 1 NC_010645.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 720221 ksgA 6267783 ksgA Bordetella avium 197N dimethyladenosine transferase YP_785229.1 719433 D 360910 CDS YP_785230.1 187477206 6267277 complement(720429..>721574) 1 NC_010645.1 glycerate kinase >721574 garK 6267277 garK Bordetella avium 197N glycerate kinase YP_785230.1 720429 R 360910 CDS YP_785231.1 187477207 6267053 721667..723109 1 NC_010645.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 723109 pykA 6267053 pykA Bordetella avium 197N pyruvate kinase YP_785231.1 721667 D 360910 CDS YP_785232.1 187477208 6267606 complement(723117..724346) 1 NC_010645.1 transporter 724346 6267606 BAV0699 Bordetella avium 197N transporter YP_785232.1 723117 R 360910 CDS YP_785233.1 187477209 6264919 complement(724490..725023) 1 NC_010645.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 725023 def 6264919 def Bordetella avium 197N peptide deformylase YP_785233.1 724490 R 360910 CDS YP_785234.1 187477210 6266875 complement(725209..725604) 1 NC_010645.1 lactoylglutathione lyase 725604 gloA 6266875 gloA Bordetella avium 197N lactoylglutathione lyase YP_785234.1 725209 R 360910 CDS YP_785235.1 187477211 6267091 complement(725715..726869) 1 NC_010645.1 citrate utilization protein B 726869 citB 6267091 citB Bordetella avium 197N citrate utilization protein B YP_785235.1 725715 R 360910 CDS YP_785236.1 187477212 6266787 complement(726859..728259) 1 NC_010645.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 728259 6266787 BAV0703 Bordetella avium 197N tricarballylate dehydrogenase YP_785236.1 726859 R 360910 CDS YP_785237.1 187477213 6264920 complement(728338..729258) 1 NC_010645.1 LysR family transcriptional regulator 729258 6264920 BAV0704 Bordetella avium 197N LysR family transcriptional regulator YP_785237.1 728338 R 360910 CDS YP_785238.1 187477214 6264921 complement(729263..730108) 1 NC_010645.1 hypothetical protein 730108 6264921 BAV0705 Bordetella avium 197N hypothetical protein YP_785238.1 729263 R 360910 CDS YP_785239.1 187477215 6264922 complement(730095..730823) 1 NC_010645.1 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha 730823 6264922 BAV0706 Bordetella avium 197N 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha YP_785239.1 730095 R 360910 CDS YP_785240.1 187477216 6264923 complement(730827..>731366) 1 NC_010645.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase >731366 6264923 BAV0707 Bordetella avium 197N D,D-heptose 1,7-bisphosphate phosphatase YP_785240.1 730827 R 360910 CDS YP_785241.1 187477217 6264924 complement(731363..733498) 1 NC_010645.1 glycyl-tRNA synthetase beta chain 733498 glyS 6264924 glyS Bordetella avium 197N glycyl-tRNA synthetase beta chain YP_785241.1 731363 R 360910 CDS YP_785242.1 187477218 6267103 complement(733500..734405) 1 NC_010645.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 734405 glyQ 6267103 glyQ Bordetella avium 197N glycyl-tRNA synthetase subunit alpha YP_785242.1 733500 R 360910 CDS YP_785243.1 187477219 6267102 734648..735415 1 NC_010645.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 735415 caiD 6267102 caiD Bordetella avium 197N enoyl-CoA hydratase YP_785243.1 734648 D 360910 CDS YP_785244.1 187477220 6266752 735483..737003 1 NC_010645.1 fumarate hydratase 737003 fumA 6266752 fumA Bordetella avium 197N fumarate hydratase YP_785244.1 735483 D 360910 CDS YP_785245.1 187477221 6267045 complement(737114..747058) 1 NC_010645.1 adhesin 747058 6267045 BAV0712 Bordetella avium 197N adhesin YP_785245.1 737114 R 360910 CDS YP_785246.1 187477222 6264925 <747370..748194 1 NC_010645.1 hypothetical protein 748194 6264925 BAV0713 Bordetella avium 197N hypothetical protein YP_785246.1 <747370 D 360910 CDS YP_785247.1 187477223 6264926 748219..748455 1 NC_010645.1 Partial CDS. Truncated at the N-terminal region; CoA transferase (partial) 748455 6264926 BAV0714 Bordetella avium 197N CoA transferase (partial) YP_785247.1 748219 D 360910 CDS YP_785248.1 187477224 6264927 748455..749279 1 NC_010645.1 citrate lyase beta chain 749279 citE 6264927 citE Bordetella avium 197N citrate lyase beta chain YP_785248.1 748455 D 360910 CDS YP_785249.1 187477225 6266788 749289..749804 1 NC_010645.1 DedA family membrane protein 749804 6266788 BAV0716 Bordetella avium 197N DedA family membrane protein YP_785249.1 749289 D 360910 CDS YP_785250.1 187477226 6264928 749918..751972 1 NC_010645.1 hypothetical protein 751972 6264928 BAV0717 Bordetella avium 197N hypothetical protein YP_785250.1 749918 D 360910 CDS YP_785251.1 187477227 6264929 complement(752017..752613) 1 NC_010645.1 isochorismatase family hydrolase 752613 6264929 BAV0718 Bordetella avium 197N isochorismatase family hydrolase YP_785251.1 752017 R 360910 CDS YP_785252.1 187477228 6264930 complement(752687..753160) 1 NC_010645.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 753160 folK 6264930 folK Bordetella avium 197N 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_785252.1 752687 R 360910 CDS YP_785253.1 187477229 6267028 complement(753157..754515) 1 NC_010645.1 poly(A) polymerase 754515 pcnB 6267028 pcnB Bordetella avium 197N poly(A) polymerase YP_785253.1 753157 R 360910 CDS YP_785254.1 187477230 6267492 complement(754515..755213) 1 NC_010645.1 hypothetical protein 755213 6267492 BAV0721 Bordetella avium 197N hypothetical protein YP_785254.1 754515 R 360910 CDS YP_785255.1 187477231 6264931 complement(755210..755899) 1 NC_010645.1 DnaA regulatory inactivator Hda 755899 6264931 BAV0722 Bordetella avium 197N DnaA regulatory inactivator Hda YP_785255.1 755210 R 360910 CDS YP_785256.1 187477232 6264932 756176..757225 1 NC_010645.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 757225 purG 6264932 purG Bordetella avium 197N phosphoribosylaminoimidazole synthetase YP_785256.1 756176 D 360910 CDS YP_785257.1 187477233 6267599 complement(757271..758209) 1 NC_010645.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 758209 miaA 6267599 miaA Bordetella avium 197N tRNA delta(2)-isopentenylpyrophosphate transferase YP_785257.1 757271 R 360910 CDS YP_785258.1 187477234 6267351 complement(758212..760077) 1 NC_010645.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 760077 mutL 6267351 mutL Bordetella avium 197N DNA mismatch repair protein YP_785258.1 758212 R 360910 CDS YP_785259.1 187477235 6267405 760185..760820 1 NC_010645.1 membrane protein 760820 dedA 6267405 dedA Bordetella avium 197N membrane protein YP_785259.1 760185 D 360910 CDS YP_785260.1 187477236 6266872 complement(760909..761829) 1 NC_010645.1 transporter 761829 6266872 BAV0727 Bordetella avium 197N transporter YP_785260.1 760909 R 360910 CDS YP_785261.1 187477237 6264933 complement(761926..763659) 1 NC_010645.1 pyruvate dehydrogenase (cytochrome) 763659 poxB 6264933 poxB Bordetella avium 197N pyruvate dehydrogenase (cytochrome) YP_785261.1 761926 R 360910 CDS YP_785262.1 187477238 6267556 complement(763667..765169) 1 NC_010645.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 765169 mqo 6267556 mqo Bordetella avium 197N malate:quinone oxidoreductase YP_785262.1 763667 R 360910 CDS YP_785263.1 187477239 6267380 complement(765189..765578) 1 NC_010645.1 hypothetical protein 765578 6267380 BAV0730 Bordetella avium 197N hypothetical protein YP_785263.1 765189 R 360910 CDS YP_785264.1 187477240 6264934 complement(766474..>767733) 1 NC_010645.1 N-acetylmuramoyl-L-alanine amidase >767733 amiC 6264934 amiC Bordetella avium 197N N-acetylmuramoyl-L-alanine amidase YP_785264.1 766474 R 360910 CDS YP_785265.1 187477241 6266619 complement(767766..768299) 1 NC_010645.1 hypothetical protein 768299 6266619 BAV0732 Bordetella avium 197N hypothetical protein YP_785265.1 767766 R 360910 CDS YP_785266.1 187477242 6264935 768444..769832 1 NC_010645.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 769832 fumC 6264935 fumC Bordetella avium 197N fumarate hydratase YP_785266.1 768444 D 360910 CDS YP_785267.1 187477243 6267046 complement(769872..770771) 1 NC_010645.1 transporter 770771 6267046 BAV0734 Bordetella avium 197N transporter YP_785267.1 769872 R 360910 CDS YP_785268.1 187477244 6264936 770989..771966 1 NC_010645.1 hypothetical protein 771966 6264936 BAV0735 Bordetella avium 197N hypothetical protein YP_785268.1 770989 D 360910 CDS YP_785269.1 187477245 6264937 772086..772628 1 NC_010645.1 N-acetyltransferase 772628 6264937 BAV0736 Bordetella avium 197N N-acetyltransferase YP_785269.1 772086 D 360910 CDS YP_785270.1 187477246 6264938 complement(772684..773382) 1 NC_010645.1 hypothetical protein 773382 6264938 BAV0737 Bordetella avium 197N hypothetical protein YP_785270.1 772684 R 360910 CDS YP_785271.1 187477247 6264939 <774015..774566 1 NC_010645.1 hypothetical protein 774566 6264939 BAV0738 Bordetella avium 197N hypothetical protein YP_785271.1 <774015 D 360910 CDS YP_785272.1 187477248 6264940 774572..775360 1 NC_010645.1 ABC transporter ATP-binding protein 775360 6264940 BAV0739 Bordetella avium 197N ABC transporter ATP-binding protein YP_785272.1 774572 D 360910 CDS YP_785273.1 187477249 6264941 775357..776184 1 NC_010645.1 ABC transporter permease 776184 6264941 BAV0740 Bordetella avium 197N ABC transporter permease YP_785273.1 775357 D 360910 CDS YP_785274.1 187477250 6264942 776197..777156 1 NC_010645.1 ABC transporter substrate-binding protein 777156 6264942 BAV0741 Bordetella avium 197N ABC transporter substrate-binding protein YP_785274.1 776197 D 360910 CDS YP_785275.1 187477251 6264943 <777222..778040 1 NC_010645.1 hydrolase 778040 6264943 BAV0742 Bordetella avium 197N hydrolase YP_785275.1 <777222 D 360910 CDS YP_785276.1 187477252 6264944 778229..778993 1 NC_010645.1 MltA-interacting scaffolding protein 778993 mipA 6264944 mipA Bordetella avium 197N MltA-interacting scaffolding protein YP_785276.1 778229 D 360910 CDS YP_785277.1 187477253 6267357 779252..779851 1 NC_010645.1 hypothetical protein 779851 6267357 BAV0744 Bordetella avium 197N hypothetical protein YP_785277.1 779252 D 360910 CDS YP_785278.1 187477254 6264945 complement(779948..780826) 1 NC_010645.1 glutathione S-transferase 780826 6264945 BAV0745 Bordetella avium 197N glutathione S-transferase YP_785278.1 779948 R 360910 CDS YP_785279.1 187477255 6264946 781135..782229 1 NC_010645.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 782229 ilvE 6264946 ilvE Bordetella avium 197N branched-chain amino acid aminotransferase YP_785279.1 781135 D 360910 CDS YP_785280.1 187477256 6267238 complement(782359..783543) 1 NC_010645.1 membrane protein 783543 6267238 BAV0747 Bordetella avium 197N membrane protein YP_785280.1 782359 R 360910 CDS YP_785281.1 187477257 6264947 783593..784171 1 NC_010645.1 flavoredoxin 784171 6264947 BAV0748 Bordetella avium 197N flavoredoxin YP_785281.1 783593 D 360910 CDS YP_785282.1 187477258 6264948 complement(784226..>784789) 1 NC_010645.1 hypothetical protein >784789 6264948 BAV0749 Bordetella avium 197N hypothetical protein YP_785282.1 784226 R 360910 CDS YP_785283.1 187477259 6264949 complement(784782..785432) 1 NC_010645.1 hypothetical protein 785432 6264949 BAV0750 Bordetella avium 197N hypothetical protein YP_785283.1 784782 R 360910 CDS YP_785284.1 187477260 6264950 complement(785429..788620) 1 NC_010645.1 membrane protein 788620 6264950 BAV0751 Bordetella avium 197N membrane protein YP_785284.1 785429 R 360910 CDS YP_785285.1 187477261 6264951 complement(788617..789312) 1 NC_010645.1 hypothetical protein 789312 6264951 BAV0752 Bordetella avium 197N hypothetical protein YP_785285.1 788617 R 360910 CDS YP_785286.1 187477262 6264952 789529..791109 1 NC_010645.1 methyl-accepting chemotaxis protein 791109 6264952 BAV0753 Bordetella avium 197N methyl-accepting chemotaxis protein YP_785286.1 789529 D 360910 CDS YP_785287.1 187477263 6264953 complement(791115..791492) 1 NC_010645.1 hypothetical protein 791492 6264953 BAV0754 Bordetella avium 197N hypothetical protein YP_785287.1 791115 R 360910 CDS YP_785288.1 187477264 6264954 791843..793657 1 NC_010645.1 ABC transporter ATP-binding protein 793657 6264954 BAV0755 Bordetella avium 197N ABC transporter ATP-binding protein YP_785288.1 791843 D 360910 CDS YP_785289.1 187477265 6264955 793740..794813 1 NC_010645.1 choloylglycine hydrolase 794813 6264955 BAV0756 Bordetella avium 197N choloylglycine hydrolase YP_785289.1 793740 D 360910 CDS YP_785290.1 187477266 6264956 794898..796397 1 NC_010645.1 lysine-specific permease 796397 cadR 6264956 cadR Bordetella avium 197N lysine-specific permease YP_785290.1 794898 D 360910 CDS YP_785291.1 187477267 6266750 complement(796614..796886) 1 NC_010645.1 hypothetical protein 796886 6266750 BAV0758 Bordetella avium 197N hypothetical protein YP_785291.1 796614 R 360910 CDS YP_785292.1 187477268 6264959 798697..800025 1 NC_010645.1 hypothetical protein 800025 6264959 BAV0761 Bordetella avium 197N hypothetical protein YP_785292.1 798697 D 360910 CDS YP_785293.1 187477269 6264960 complement(800180..800680) 1 NC_010645.1 GnaT family acetyltransferase 800680 6264960 BAV0762 Bordetella avium 197N GnaT family acetyltransferase YP_785293.1 800180 R 360910 CDS YP_785294.1 187477270 6264961 complement(800814..801689) 1 NC_010645.1 LysR family transcriptional regulator 801689 6264961 BAV0763 Bordetella avium 197N LysR family transcriptional regulator YP_785294.1 800814 R 360910 CDS YP_785295.1 187477271 6264962 801792..802700 1 NC_010645.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 802700 argC 6264962 argC Bordetella avium 197N N-acetyl-gamma-glutamyl-phosphate reductase YP_785295.1 801792 D 360910 CDS YP_785296.1 187477272 6266643 complement(802707..803882) 1 NC_010645.1 hypothetical protein 803882 6266643 BAV0765 Bordetella avium 197N hypothetical protein YP_785296.1 802707 R 360910 CDS YP_785297.1 187477273 6264963 complement(803980..805140) 1 NC_010645.1 membrane-associated phosphoesterase 805140 6264963 BAV0766 Bordetella avium 197N membrane-associated phosphoesterase YP_785297.1 803980 R 360910 CDS YP_785298.1 187477274 6264964 805238..805546 1 NC_010645.1 hypothetical protein 805546 6264964 BAV0767 Bordetella avium 197N hypothetical protein YP_785298.1 805238 D 360910 CDS YP_785299.1 187477275 6264965 complement(805550..805999) 1 NC_010645.1 GnaT family acetyltransferase 805999 6264965 BAV0768 Bordetella avium 197N GnaT family acetyltransferase YP_785299.1 805550 R 360910 CDS YP_785300.1 187477276 6264966 complement(806083..807402) 1 NC_010645.1 transporter 807402 6264966 BAV0769 Bordetella avium 197N transporter YP_785300.1 806083 R 360910 CDS YP_785301.1 187477277 6264967 complement(807403..808776) 1 NC_010645.1 permease 808776 6264967 BAV0770 Bordetella avium 197N permease YP_785301.1 807403 R 360910 CDS YP_785302.1 187477278 6264968 809036..809650 1 NC_010645.1 glutathione S-transferase 809650 6264968 BAV0771 Bordetella avium 197N glutathione S-transferase YP_785302.1 809036 D 360910 CDS YP_785303.1 187477279 6264969 complement(809647..810729) 1 NC_010645.1 2-nitropropane dioxygenase 810729 6264969 BAV0772 Bordetella avium 197N 2-nitropropane dioxygenase YP_785303.1 809647 R 360910 CDS YP_785304.1 187477280 6264970 complement(810746..811597) 1 NC_010645.1 LysR family transcriptional regulator 811597 6264970 BAV0773 Bordetella avium 197N LysR family transcriptional regulator YP_785304.1 810746 R 360910 CDS YP_785305.1 187477281 6264971 811738..812688 1 NC_010645.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 812688 add 6264971 add Bordetella avium 197N adenosine deaminase YP_785305.1 811738 D 360910 CDS YP_785306.1 187477282 6266599 812948..814447 1 NC_010645.1 extracellular solute-binding protein 814447 6266599 BAV0775 Bordetella avium 197N extracellular solute-binding protein YP_785306.1 812948 D 360910 CDS YP_785307.1 187477283 6264972 814450..816258 1 NC_010645.1 gamma-glutamyltranspeptidase 816258 ggt 6264972 ggt Bordetella avium 197N gamma-glutamyltranspeptidase YP_785307.1 814450 D 360910 CDS YP_785308.1 187477284 6267065 816266..816664 1 NC_010645.1 hypothetical protein 816664 6267065 BAV0777 Bordetella avium 197N hypothetical protein YP_785308.1 816266 D 360910 CDS YP_785309.1 187477285 6264973 complement(816661..817101) 1 NC_010645.1 GnaT family acetyltransferase 817101 6264973 BAV0778 Bordetella avium 197N GnaT family acetyltransferase YP_785309.1 816661 R 360910 CDS YP_785310.1 187477286 6264974 complement(817292..817843) 1 NC_010645.1 bacterioferritin 817843 6264974 BAV0779 Bordetella avium 197N bacterioferritin YP_785310.1 817292 R 360910 CDS YP_785311.1 187477287 6264975 818067..818282 1 NC_010645.1 hypothetical protein 818282 6264975 BAV0780 Bordetella avium 197N hypothetical protein YP_785311.1 818067 D 360910 CDS YP_785312.1 187477288 6264976 818456..818950 1 NC_010645.1 hypothetical protein 818950 6264976 BAV0781 Bordetella avium 197N hypothetical protein YP_785312.1 818456 D 360910 CDS YP_785313.1 187477289 6264977 819241..820440 1 NC_010645.1 two component system sensor kinase 820440 6264977 BAV0782 Bordetella avium 197N two component system sensor kinase YP_785313.1 819241 D 360910 CDS YP_785314.1 187477290 6264978 820533..821090 1 NC_010645.1 two component system response regulator 821090 6264978 BAV0783 Bordetella avium 197N two component system response regulator YP_785314.1 820533 D 360910 CDS YP_785315.1 187477291 6264979 <821360..822268 1 NC_010645.1 ubiquinol oxidase polypeptide II 822268 cyoA 6264979 cyoA Bordetella avium 197N ubiquinol oxidase polypeptide II YP_785315.1 <821360 D 360910 CDS YP_785316.1 187477292 6266834 822269..824248 1 NC_010645.1 ubiquinol oxidase polypeptide I 824248 cyoB 6266834 cyoB Bordetella avium 197N ubiquinol oxidase polypeptide I YP_785316.1 822269 D 360910 CDS YP_785317.1 187477293 6266835 824255..824869 1 NC_010645.1 cytochrome O ubiquinol oxidase subunit III 824869 cyoC 6266835 cyoC Bordetella avium 197N cytochrome O ubiquinol oxidase subunit III YP_785317.1 824255 D 360910 CDS YP_785318.1 187477294 6266836 824869..825210 1 NC_010645.1 cytochrome O ubiquinol oxidase subunit IV 825210 cyoD 6266836 cyoD Bordetella avium 197N cytochrome O ubiquinol oxidase subunit IV YP_785318.1 824869 D 360910 CDS YP_785319.1 187477295 6266837 complement(825287..826249) 1 NC_010645.1 hypothetical protein 826249 6266837 BAV0788 Bordetella avium 197N hypothetical protein YP_785319.1 825287 R 360910 CDS YP_785320.1 187477296 6264980 826632..828014 1 NC_010645.1 chemotaxis sensory transducer 828014 6264980 BAV0789 Bordetella avium 197N chemotaxis sensory transducer YP_785320.1 826632 D 360910 CDS YP_785321.1 187477297 6264981 828090..828842 1 NC_010645.1 cell wall degrading peptidase 828842 6264981 BAV0790 Bordetella avium 197N cell wall degrading peptidase YP_785321.1 828090 D 360910 CDS YP_785322.1 187477298 6264982 828899..829381 1 NC_010645.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 829381 6264982 BAV0791 Bordetella avium 197N putative nucleotide-binding protein YP_785322.1 828899 D 360910 CDS YP_785323.1 187477299 6264983 complement(829419..>830582) 1 NC_010645.1 membrane protein >830582 6264983 BAV0792 Bordetella avium 197N membrane protein YP_785323.1 829419 R 360910 CDS YP_785324.1 187477300 6264984 complement(830625..831122) 1 NC_010645.1 lipoprotein 831122 6264984 BAV0793 Bordetella avium 197N lipoprotein YP_785324.1 830625 R 360910 CDS YP_785325.1 187477301 6264985 complement(831119..831856) 1 NC_010645.1 lipoprotein 831856 6264985 BAV0794 Bordetella avium 197N lipoprotein YP_785325.1 831119 R 360910 CDS YP_785326.1 187477302 6264986 complement(831874..>833439) 1 NC_010645.1 hypothetical protein >833439 6264986 BAV0795 Bordetella avium 197N hypothetical protein YP_785326.1 831874 R 360910 CDS YP_785327.1 187477303 6264987 complement(833429..834628) 1 NC_010645.1 ABC transporter transmembrane protein 834628 6264987 BAV0796 Bordetella avium 197N ABC transporter transmembrane protein YP_785327.1 833429 R 360910 CDS YP_785328.1 187477304 6264988 complement(834625..835311) 1 NC_010645.1 ABC transporter ATP-binding protein 835311 6264988 BAV0797 Bordetella avium 197N ABC transporter ATP-binding protein YP_785328.1 834625 R 360910 CDS YP_785329.1 187477305 6264989 complement(835324..>837297) 1 NC_010645.1 hypothetical protein >837297 6264989 BAV0798 Bordetella avium 197N hypothetical protein YP_785329.1 835324 R 360910 CDS YP_785330.1 187477306 6264990 complement(837294..838241) 1 NC_010645.1 membrane protein 838241 6264990 BAV0799 Bordetella avium 197N membrane protein YP_785330.1 837294 R 360910 CDS YP_785331.1 187477307 6264991 complement(838251..840941) 1 NC_010645.1 virulence factor 840941 srfC 6264991 srfC Bordetella avium 197N virulence factor YP_785331.1 838251 R 360910 CDS YP_785332.1 187477308 6267770 complement(840947..844048) 1 NC_010645.1 virulence factor 844048 srfB 6267770 srfB Bordetella avium 197N virulence factor YP_785332.1 840947 R 360910 CDS YP_785333.1 187477309 6267768 845805..847622 1 NC_010645.1 catalyzes the hydrolysis of allophanate; allophanate hydrolase 847622 6267768 BAV0804 Bordetella avium 197N allophanate hydrolase YP_785333.1 845805 D 360910 CDS YP_785334.1 187477310 6264992 847715..848089 1 NC_010645.1 hypothetical protein 848089 6264992 BAV0805 Bordetella avium 197N hypothetical protein YP_785334.1 847715 D 360910 CDS YP_785335.1 187477311 6264993 848102..848626 1 NC_010645.1 ECF sigma factor 848626 6264993 BAV0806 Bordetella avium 197N ECF sigma factor YP_785335.1 848102 D 360910 CDS YP_785336.1 187477312 6264994 848623..849420 1 NC_010645.1 transmembrane regulator 849420 6264994 BAV0807 Bordetella avium 197N transmembrane regulator YP_785336.1 848623 D 360910 CDS YP_785337.1 187477313 6264995 complement(849430..850134) 1 NC_010645.1 3-oxoacyl-[acyl-carrier-protein] reductase 850134 6264995 BAV0808 Bordetella avium 197N 3-oxoacyl-[acyl-carrier-protein] reductase YP_785337.1 849430 R 360910 CDS YP_785338.1 187477314 6264996 complement(850196..851044) 1 NC_010645.1 membrane protein 851044 6264996 BAV0809 Bordetella avium 197N membrane protein YP_785338.1 850196 R 360910 CDS YP_785339.1 187477315 6264997 join(<851210..>851281,851285..851389) 1 NC_010645.1 hypothetical protein 851389 6264997 BAV0810 Bordetella avium 197N hypothetical protein YP_785339.1 <851210 D 360910 CDS YP_785340.1 187477316 6264998 complement(851609..854149) 1 NC_010645.1 autotransporter 854149 6264998 BAV0811 Bordetella avium 197N autotransporter YP_785340.1 851609 R 360910 CDS YP_785341.1 187477317 6264999 complement(854262..854597) 1 NC_010645.1 hypothetical protein 854597 6264999 BAV0812 Bordetella avium 197N hypothetical protein YP_785341.1 854262 R 360910 CDS YP_785342.1 187477318 6265000 complement(854818..855957) 1 NC_010645.1 hypothetical protein 855957 6265000 BAV0813 Bordetella avium 197N hypothetical protein YP_785342.1 854818 R 360910 CDS YP_785343.1 187477319 6265001 complement(855987..856247) 1 NC_010645.1 NAD-dependent formate dehydrogenase subunit delta 856247 fdsD 6265001 fdsD Bordetella avium 197N NAD-dependent formate dehydrogenase subunit delta YP_785343.1 855987 R 360910 CDS YP_785344.1 187477320 6266964 complement(856272..857087) 1 NC_010645.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 857087 fdhD 6266964 fdhD Bordetella avium 197N formate dehydrogenase accessory protein YP_785344.1 856272 R 360910 CDS YP_785345.1 187477321 6266957 complement(857106..859967) 1 NC_010645.1 NAD-dependent formate dehydrogenase subunit alpha 859967 fdhF 6266957 fdhF Bordetella avium 197N NAD-dependent formate dehydrogenase subunit alpha YP_785345.1 857106 R 360910 CDS YP_785346.1 187477322 6266959 complement(859979..861535) 1 NC_010645.1 NAD-dependent formate dehydrogenase subunit beta 861535 fdsB 6266959 fdsB Bordetella avium 197N NAD-dependent formate dehydrogenase subunit beta YP_785346.1 859979 R 360910 CDS YP_785347.1 187477323 6266963 complement(861532..861999) 1 NC_010645.1 catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma 861999 fdsG 6266963 fdsG Bordetella avium 197N formate dehydrogenase subunit gamma YP_785347.1 861532 R 360910 CDS YP_785348.1 187477324 6266965 862127..863203 1 NC_010645.1 molybdenum-binding protein 863203 6266965 BAV0819 Bordetella avium 197N molybdenum-binding protein YP_785348.1 862127 D 360910 CDS YP_785349.1 187477325 6265002 863232..864314 1 NC_010645.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 864314 moaA 6265002 moaA Bordetella avium 197N molybdenum cofactor biosynthesis protein A YP_785349.1 863232 D 360910 CDS YP_785350.1 187477326 6267366 <864307..864891 1 NC_010645.1 molybdopterin-guanine dinucleotide biosynthesis protein A 864891 chlB 6267366 chlB Bordetella avium 197N molybdopterin-guanine dinucleotide biosynthesis protein A YP_785350.1 <864307 D 360910 CDS YP_785351.1 187477327 6266784 complement(864888..866087) 1 NC_010645.1 molybdopterin cofactor biosynthesis protein 866087 moeA 6266784 moeA Bordetella avium 197N molybdopterin cofactor biosynthesis protein YP_785351.1 864888 R 360910 CDS YP_785352.1 187477328 6267375 complement(866084..866602) 1 NC_010645.1 molybdenum cofactor biosynthesis protein B 866602 moaB 6267375 moaB Bordetella avium 197N molybdenum cofactor biosynthesis protein B YP_785352.1 866084 R 360910 CDS YP_785353.1 187477329 6267367 complement(866599..867069) 1 NC_010645.1 molybdopterin converting factor subunit 2; molybdopterin converting factor large subunit 867069 moaE 6267367 moaE Bordetella avium 197N molybdopterin converting factor large subunit YP_785353.1 866599 R 360910 CDS YP_785354.1 187477330 6267370 complement(867072..>867323) 1 NC_010645.1 molybdopterin converting factor small subunit >867323 moaD 6267370 moaD Bordetella avium 197N molybdopterin converting factor small subunit YP_785354.1 867072 R 360910 CDS YP_785355.1 187477331 6267369 complement(867304..867792) 1 NC_010645.1 molybdenum cofactor biosynthesis protein C 867792 moaC 6267369 moaC Bordetella avium 197N molybdenum cofactor biosynthesis protein C YP_785355.1 867304 R 360910 CDS YP_785356.1 187477332 6267368 867913..871374 1 NC_010645.1 hypothetical protein 871374 6267368 BAV0827 Bordetella avium 197N hypothetical protein YP_785356.1 867913 D 360910 CDS YP_785357.1 187477333 6265003 871508..872011 1 NC_010645.1 antioxidant 872011 6265003 BAV0828 Bordetella avium 197N antioxidant YP_785357.1 871508 D 360910 CDS YP_785358.1 187477334 6265004 872069..873385 1 NC_010645.1 transporter 873385 6265004 BAV0829 Bordetella avium 197N transporter YP_785358.1 872069 D 360910 CDS YP_785359.1 187477335 6265005 complement(873387..874235) 1 NC_010645.1 membrane protein 874235 6265005 BAV0830 Bordetella avium 197N membrane protein YP_785359.1 873387 R 360910 CDS YP_785360.1 187477336 6265006 complement(874232..875203) 1 NC_010645.1 biotin synthase 875203 bioB 6265006 bioB Bordetella avium 197N biotin synthase YP_785360.1 874232 R 360910 CDS YP_785361.1 187477337 6266714 875693..875998 1 NC_010645.1 Seems to be unique to Bordetellae. Similar to members of a family of exported proteins in the Bordetellae.; hypothetical protein 875998 6266714 BAV0832 Bordetella avium 197N hypothetical protein YP_785361.1 875693 D 360910 CDS YP_785362.1 187477338 6265007 876082..876657 1 NC_010645.1 TetR family transcriptional regulator 876657 6265007 BAV0833 Bordetella avium 197N TetR family transcriptional regulator YP_785362.1 876082 D 360910 CDS YP_785363.1 187477339 6267835 complement(877711..878472) 1 NC_010645.1 membrane-associated phospholipid phosphatase 878472 6267835 BAV0834 Bordetella avium 197N membrane-associated phospholipid phosphatase YP_785363.1 877711 R 360910 CDS YP_785364.1 187477340 6265009 878649..880076 1 NC_010645.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 880076 6265009 BAV0835 Bordetella avium 197N (dimethylallyl)adenosine tRNA methylthiotransferase YP_785364.1 878649 D 360910 CDS YP_785365.1 187477341 6265010 880073..881095 1 NC_010645.1 PhoH-like protein 881095 6265010 BAV0836 Bordetella avium 197N PhoH-like protein YP_785365.1 880073 D 360910 CDS YP_785366.1 187477342 6265011 881092..881577 1 NC_010645.1 putative metalloprotease 881577 6265011 BAV0837 Bordetella avium 197N putative metalloprotease YP_785366.1 881092 D 360910 CDS YP_785367.1 187477343 6265012 881703..882575 1 NC_010645.1 magnesium and cobalt efflux protein 882575 corC 6265012 corC Bordetella avium 197N magnesium and cobalt efflux protein YP_785367.1 881703 D 360910 CDS YP_785368.1 187477344 6266803 <882572..884164 1 NC_010645.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 884164 lnt 6266803 lnt Bordetella avium 197N apolipoprotein N-acyltransferase YP_785368.1 <882572 D 360910 CDS YP_785369.1 187477345 6266821 complement(884170..885162) 1 NC_010645.1 aldo/keto reductase 885162 6266821 BAV0840 Bordetella avium 197N aldo/keto reductase YP_785369.1 884170 R 360910 CDS YP_785370.1 187477346 6267848 complement(885879..886814) 1 NC_010645.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 886814 secF 6267848 secF Bordetella avium 197N preprotein translocase subunit SecF YP_785370.1 885879 R 360910 CDS YP_785371.1 187477347 6267749 complement(886881..888761) 1 NC_010645.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 888761 secD 6267749 secD Bordetella avium 197N preprotein translocase subunit SecD YP_785371.1 886881 R 360910 CDS YP_785372.1 187477348 6267748 complement(888825..889166) 1 NC_010645.1 preprotein translocase subunit YajC 889166 6267748 BAV0843 Bordetella avium 197N preprotein translocase subunit YajC YP_785372.1 888825 R 360910 CDS YP_785373.1 187477349 6265014 complement(889310..890446) 1 NC_010645.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 890446 tgt 6265014 tgt Bordetella avium 197N queuine tRNA-ribosyltransferase YP_785373.1 889310 R 360910 CDS YP_785374.1 187477350 6267797 complement(890443..>891483) 1 NC_010645.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase >891483 queA 6267797 queA Bordetella avium 197N S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_785374.1 890443 R 360910 CDS YP_785375.1 187477351 6267618 891636..893087 1 NC_010645.1 D-alanyl-D-alanine carboxypeptidase 893087 6267618 BAV0846 Bordetella avium 197N D-alanyl-D-alanine carboxypeptidase YP_785375.1 891636 D 360910 CDS YP_785376.1 187477352 6265015 893144..893782 1 NC_010645.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 893782 upp 6265015 upp Bordetella avium 197N uracil phosphoribosyltransferase YP_785376.1 893144 D 360910 CDS YP_785377.1 187477353 6267920 complement(893788..895212) 1 NC_010645.1 siroheme synthase includes uroporphyrin-iii c-methyltransferase/precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase 895212 cysG 6267920 cysG Bordetella avium 197N siroheme synthase includes uroporphyrin-iii c-methyltransferase/precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase YP_785377.1 893788 R 360910 CDS YP_785378.1 187477354 6266842 895613..896326 1 NC_010645.1 hypothetical protein 896326 6266842 BAV0849 Bordetella avium 197N hypothetical protein YP_785378.1 895613 D 360910 CDS YP_785379.1 187477355 6265016 896410..896727 1 NC_010645.1 membrane protein 896727 6265016 BAV0850 Bordetella avium 197N membrane protein YP_785379.1 896410 D 360910 CDS YP_785380.1 187477356 6265017 896784..897197 1 NC_010645.1 membrane protein 897197 6265017 BAV0851 Bordetella avium 197N membrane protein YP_785380.1 896784 D 360910 CDS YP_785381.1 187477357 6265018 897197..897553 1 NC_010645.1 hypothetical protein 897553 6265018 BAV0852 Bordetella avium 197N hypothetical protein YP_785381.1 897197 D 360910 CDS YP_785382.1 187477358 6265019 complement(897603..898391) 1 NC_010645.1 lipoprotein 898391 6265019 BAV0853 Bordetella avium 197N lipoprotein YP_785382.1 897603 R 360910 CDS YP_785383.1 187477359 6265020 complement(898553..>900097) 1 NC_010645.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase >900097 ubiD 6265020 ubiD Bordetella avium 197N 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_785383.1 898553 R 360910 CDS YP_785384.1 187477360 6267910 900183..901007 1 NC_010645.1 lytic transglycosylase 901007 6267910 BAV0855 Bordetella avium 197N lytic transglycosylase YP_785384.1 900183 D 360910 CDS YP_785385.1 187477361 6265021 complement(901018..903261) 1 NC_010645.1 adhesin 903261 6265021 BAV0856 Bordetella avium 197N adhesin YP_785385.1 901018 R 360910 CDS YP_785386.1 187477362 6265022 complement(903391..904545) 1 NC_010645.1 aminotransferase 904545 6265022 BAV0857 Bordetella avium 197N aminotransferase YP_785386.1 903391 R 360910 CDS YP_785387.1 187477363 6265023 904579..905274 1 NC_010645.1 . Seems to be unique to Bordetellae; hypothetical protein 905274 6265023 BAV0858 Bordetella avium 197N hypothetical protein YP_785387.1 904579 D 360910 CDS YP_785388.1 187477364 6265024 905419..907764 1 NC_010645.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 907764 maeB1 6265024 maeB1 Bordetella avium 197N malic enzyme YP_785388.1 905419 D 360910 CDS YP_785389.1 187477365 6267324 907745..908944 1 NC_010645.1 lipid acyl hydrolase 908944 6267324 BAV0860 Bordetella avium 197N lipid acyl hydrolase YP_785389.1 907745 D 360910 CDS YP_785390.1 187477366 6265025 908941..909405 1 NC_010645.1 ribonuclease inhibitor 909405 6265025 BAV0861 Bordetella avium 197N ribonuclease inhibitor YP_785390.1 908941 D 360910 CDS YP_785391.1 187477367 6265026 complement(909432..910166) 1 NC_010645.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 910166 6265026 BAV0862 Bordetella avium 197N 16S ribosomal RNA methyltransferase RsmE YP_785391.1 909432 R 360910 CDS YP_785392.1 187477368 6265027 910378..912417 1 NC_010645.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 912417 tkt 6265027 tkt Bordetella avium 197N transketolase YP_785392.1 910378 D 360910 CDS YP_785393.1 187477369 6267812 912434..913444 1 NC_010645.1 glyceraldehyde-3-phosphate dehydrogenase 913444 gap 6267812 gap Bordetella avium 197N glyceraldehyde-3-phosphate dehydrogenase YP_785393.1 912434 D 360910 CDS YP_785394.1 187477370 6267052 913555..914748 1 NC_010645.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 914748 pgk 6267052 pgk Bordetella avium 197N phosphoglycerate kinase YP_785394.1 913555 D 360910 CDS YP_785395.1 187477371 6267507 914840..916525 1 NC_010645.1 sulfate transporter 916525 6267507 BAV0866 Bordetella avium 197N sulfate transporter YP_785395.1 914840 D 360910 CDS YP_785396.1 187477372 6265028 complement(916510..917280) 1 NC_010645.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 917280 envM 6265028 envM Bordetella avium 197N enoyl-(acyl carrier protein) reductase YP_785396.1 916510 R 360910 CDS YP_785397.1 187477373 6266928 complement(917277..918464) 1 NC_010645.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 918464 ackA 6266928 ackA Bordetella avium 197N acetate kinase YP_785397.1 917277 R 360910 CDS YP_785398.1 187477374 6266582 complement(918461..919399) 1 NC_010645.1 catalyzes the formation of acetyl phosphate from acetyl-CoA and phosphate; can also act with other short-chain acyl-CoAs; phosphate acetyltransferase 919399 pta 6266582 pta Bordetella avium 197N phosphate acetyltransferase YP_785398.1 918461 R 360910 CDS YP_785399.1 187477375 6265029 complement(922206..922880) 1 NC_010645.1 glutathione S-transferase 922880 6265029 BAV0871 Bordetella avium 197N glutathione S-transferase YP_785399.1 922206 R 360910 CDS YP_785400.1 187477376 6265030 complement(922938..>923423) 1 NC_010645.1 acetyltransferase >923423 6265030 BAV0872 Bordetella avium 197N acetyltransferase YP_785400.1 922938 R 360910 CDS YP_785401.1 187477377 6265031 923587..924525 1 NC_010645.1 curved DNA-binding protein 924525 cbpA 6265031 cbpA Bordetella avium 197N curved DNA-binding protein YP_785401.1 923587 D 360910 CDS YP_785402.1 187477378 6266765 924528..924842 1 NC_010645.1 hypothetical protein 924842 6266765 BAV0874 Bordetella avium 197N hypothetical protein YP_785402.1 924528 D 360910 CDS YP_785403.1 187477379 6265032 924893..925591 1 NC_010645.1 membrane protein 925591 6265032 BAV0875 Bordetella avium 197N membrane protein YP_785403.1 924893 D 360910 CDS YP_785404.1 187477380 6265033 925588..925926 1 NC_010645.1 membrane protein 925926 6265033 BAV0876 Bordetella avium 197N membrane protein YP_785404.1 925588 D 360910 CDS YP_785405.1 187477381 6265034 complement(925930..927405) 1 NC_010645.1 low-affinity inorganic phosphate transporter 927405 pitA 6265034 pitA Bordetella avium 197N low-affinity inorganic phosphate transporter YP_785405.1 925930 R 360910 CDS YP_785406.1 187477382 6267539 927520..928152 1 NC_010645.1 molybdopterin biosynthesis protein 928152 chlG 6267539 chlG Bordetella avium 197N molybdopterin biosynthesis protein YP_785406.1 927520 D 360910 CDS YP_785407.1 187477383 6266785 928208..928546 1 NC_010645.1 hypothetical protein 928546 6266785 BAV0879 Bordetella avium 197N hypothetical protein YP_785407.1 928208 D 360910 CDS YP_785408.1 187477384 6265035 <928543..929388 1 NC_010645.1 exported peptidase 929388 6265035 BAV0880 Bordetella avium 197N exported peptidase YP_785408.1 <928543 D 360910 CDS YP_785409.1 187477385 6265036 complement(929404..929697) 1 NC_010645.1 hypothetical protein 929697 6265036 BAV0881 Bordetella avium 197N hypothetical protein YP_785409.1 929404 R 360910 CDS YP_785410.1 187477386 6265037 complement(929772..930038) 1 NC_010645.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 930038 infA 6265037 infA Bordetella avium 197N translation initiation factor IF-1 YP_785410.1 929772 R 360910 CDS YP_785411.1 187477387 6267245 complement(930388..930921) 1 NC_010645.1 transcriptional regulator 930921 6267245 BAV0883 Bordetella avium 197N transcriptional regulator YP_785411.1 930388 R 360910 CDS YP_785412.1 187477388 6265038 930999..931889 1 NC_010645.1 membrane protein 931889 6265038 BAV0884 Bordetella avium 197N membrane protein YP_785412.1 930999 D 360910 CDS YP_785413.1 187477389 6265039 complement(932084..933574) 1 NC_010645.1 membrane protein 933574 6265039 BAV0885 Bordetella avium 197N membrane protein YP_785413.1 932084 R 360910 CDS YP_785414.1 187477390 6265040 complement(933571..933999) 1 NC_010645.1 membrane protein 933999 6265040 BAV0886 Bordetella avium 197N membrane protein YP_785414.1 933571 R 360910 CDS YP_785415.1 187477391 6265041 934647..935099 1 NC_010645.1 acetyltransferase 935099 6265041 BAV0887 Bordetella avium 197N acetyltransferase YP_785415.1 934647 D 360910 CDS YP_785416.1 187477392 6265042 complement(935142..936419) 1 NC_010645.1 proton/sodium-glutamate symport protein 936419 gltT 6265042 gltT Bordetella avium 197N proton/sodium-glutamate symport protein YP_785416.1 935142 R 360910 CDS YP_785417.1 187477393 6267098 936661..937725 1 NC_010645.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 937725 cbbA 6267098 cbbA Bordetella avium 197N fructose-1,6-bisphosphate aldolase YP_785417.1 936661 D 360910 CDS YP_785418.1 187477394 6266761 <937859..938740 1 NC_010645.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 938740 purC 6266761 purC Bordetella avium 197N phosphoribosylaminoimidazole-succinocarboxamide synthase YP_785418.1 <937859 D 360910 CDS YP_785419.1 187477395 6267595 938909..939430 1 NC_010645.1 phosphoribosylaminoimidazole carboxylase catalytic subunit 939430 purE 6267595 purE Bordetella avium 197N phosphoribosylaminoimidazole carboxylase catalytic subunit YP_785419.1 938909 D 360910 CDS YP_785420.1 187477396 6267597 939527..940705 1 NC_010645.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 940705 purK 6267597 purK Bordetella avium 197N phosphoribosylaminoimidazole carboxylase ATPase subunit YP_785420.1 939527 D 360910 CDS YP_785421.1 187477397 6267601 940698..941723 1 NC_010645.1 hypothetical protein 941723 6267601 BAV0893 Bordetella avium 197N hypothetical protein YP_785421.1 940698 D 360910 CDS YP_785422.1 187477398 6265043 941851..942669 1 NC_010645.1 IclR family transcriptional regulator 942669 6265043 BAV0894 Bordetella avium 197N IclR family transcriptional regulator YP_785422.1 941851 D 360910 CDS YP_785423.1 187477399 6265044 943149..944039 1 NC_010645.1 agmatinase/arginase 944039 6265044 BAV0895 Bordetella avium 197N agmatinase/arginase YP_785423.1 943149 D 360910 CDS YP_785424.1 187477400 6265045 944074..944859 1 NC_010645.1 amino acid ABC transporter periplasmic amino acid-binding protein 944859 6265045 BAV0896 Bordetella avium 197N amino acid ABC transporter periplasmic amino acid-binding protein YP_785424.1 944074 D 360910 CDS YP_785425.1 187477401 6265047 945572..946318 1 NC_010645.1 amino acid ABC transporter ATP-binding protein 946318 6265047 BAV0898 Bordetella avium 197N amino acid ABC transporter ATP-binding protein YP_785425.1 945572 D 360910 CDS YP_785426.1 187477402 6265048 946479..948038 1 NC_010645.1 thiamine-pyrophosphate requiring enzyme; hypothetical protein 948038 6265048 BAV0899 Bordetella avium 197N hypothetical protein YP_785426.1 946479 D 360910 CDS YP_785427.1 187477403 6265049 <948886..953850 1 NC_010645.1 adhesin 953850 6265049 BAV0900 Bordetella avium 197N adhesin YP_785427.1 <948886 D 360910 CDS YP_785428.1 187477404 6265050 complement(954014..955207) 1 NC_010645.1 glutaryl-CoA dehydrogenase 955207 gcdH 6265050 gcdH Bordetella avium 197N glutaryl-CoA dehydrogenase YP_785428.1 954014 R 360910 CDS YP_785429.1 187477405 6267057 complement(955266..956975) 1 NC_010645.1 also similar to BAV1880 (52.585 38d.); thiamine pyrophosphate protein 956975 ilvB 6267057 ilvB Bordetella avium 197N thiamine pyrophosphate protein YP_785429.1 955266 R 360910 CDS YP_785430.1 187477406 6267235 957171..958076 1 NC_010645.1 LysR family transcriptional regulator 958076 6267235 BAV0903 Bordetella avium 197N LysR family transcriptional regulator YP_785430.1 957171 D 360910 CDS YP_785431.1 187477407 6265051 958078..959022 1 NC_010645.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 959022 xerD 6265051 xerD Bordetella avium 197N site-specific tyrosine recombinase XerD YP_785431.1 958078 D 360910 CDS YP_785432.1 187477408 6267944 959033..959521 1 NC_010645.1 regulatory protein 959521 6267944 BAV0905 Bordetella avium 197N regulatory protein YP_785432.1 959033 D 360910 CDS YP_785433.1 187477409 6265052 959584..960180 1 NC_010645.1 hypothetical protein 960180 6265052 BAV0906 Bordetella avium 197N hypothetical protein YP_785433.1 959584 D 360910 CDS YP_785434.1 187477410 6265053 960254..960613 1 NC_010645.1 hypothetical protein 960613 6265053 BAV0907 Bordetella avium 197N hypothetical protein YP_785434.1 960254 D 360910 CDS YP_785435.1 187477411 6265054 complement(960624..961853) 1 NC_010645.1 D-alanyl-D-alanine carboxypeptidase 961853 pbpG 6265054 pbpG Bordetella avium 197N D-alanyl-D-alanine carboxypeptidase YP_785435.1 960624 R 360910 CDS YP_785436.1 187477412 6267488 962214..962531 1 NC_010645.1 hypothetical protein 962531 6267488 BAV0910 Bordetella avium 197N hypothetical protein YP_785436.1 962214 D 360910 CDS YP_785437.1 187477413 6267843 963223..964416 1 NC_010645.1 transporter 964416 6267843 BAV0911 Bordetella avium 197N transporter YP_785437.1 963223 D 360910 CDS YP_785438.1 187477414 6265056 <964413..964547 1 NC_010645.1 hypothetical protein 964547 6265056 BAV0911A Bordetella avium 197N hypothetical protein YP_785438.1 <964413 D 360910 CDS YP_785439.1 187477415 6265057 964599..967250 1 NC_010645.1 hypothetical protein 967250 6265057 BAV0912 Bordetella avium 197N hypothetical protein YP_785439.1 964599 D 360910 CDS YP_785440.1 187477416 6265058 967254..970577 1 NC_010645.1 nuclease/helicase 970577 6265058 BAV0913 Bordetella avium 197N nuclease/helicase YP_785440.1 967254 D 360910 CDS YP_785441.1 187477417 6267952 970932..972872 1 NC_010645.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 972872 dnaX 6267952 dnaX Bordetella avium 197N DNA polymerase III subunits gamma and tau YP_785441.1 970932 D 360910 CDS YP_785442.1 187477418 6266898 972910..973236 1 NC_010645.1 hypothetical protein 973236 6266898 BAV0915 Bordetella avium 197N hypothetical protein YP_785442.1 972910 D 360910 CDS YP_785443.1 187477419 6265060 973256..973864 1 NC_010645.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 973864 recR 6265060 recR Bordetella avium 197N recombination protein RecR YP_785443.1 973256 D 360910 CDS YP_785444.1 187477420 6267632 complement(973951..974847) 1 NC_010645.1 beta-hydroxylase 974847 6267632 BAV0917 Bordetella avium 197N beta-hydroxylase YP_785444.1 973951 R 360910 CDS YP_785445.1 187477421 6265061 complement(974902..978141) 1 NC_010645.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 978141 carB 6265061 carB Bordetella avium 197N carbamoyl phosphate synthase large subunit YP_785445.1 974902 R 360910 CDS YP_785446.1 187477422 6266756 complement(978152..>979306) 1 NC_010645.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit >979306 carA 6266756 carA Bordetella avium 197N carbamoyl phosphate synthase small subunit YP_785446.1 978152 R 360910 CDS YP_785447.1 187477423 6266755 979513..980472 1 NC_010645.1 transaldolase B 980472 talB 6266755 talB Bordetella avium 197N transaldolase B YP_785447.1 979513 D 360910 CDS YP_785448.1 187477424 6267786 complement(980502..981140) 1 NC_010645.1 phosphoglycerate mutase 2 981140 gpmB 6267786 gpmB Bordetella avium 197N phosphoglycerate mutase 2 YP_785448.1 980502 R 360910 CDS YP_785449.1 187477425 6267111 complement(981133..982041) 1 NC_010645.1 LysR family transcriptional regulator 982041 6267111 BAV0922 Bordetella avium 197N LysR family transcriptional regulator YP_785449.1 981133 R 360910 CDS YP_785450.1 187477426 6265062 complement(982062..983147) 1 NC_010645.1 ABC transporter ATP-binding protein 983147 6265062 BAV0923 Bordetella avium 197N ABC transporter ATP-binding protein YP_785450.1 982062 R 360910 CDS YP_785451.1 187477427 6265063 complement(983151..984848) 1 NC_010645.1 ABC transporter permease 984848 6265063 BAV0924 Bordetella avium 197N ABC transporter permease YP_785451.1 983151 R 360910 CDS YP_785452.1 187477428 6265064 complement(984916..986238) 1 NC_010645.1 ABC transporter substrate-binding protein 986238 6265064 BAV0925 Bordetella avium 197N ABC transporter substrate-binding protein YP_785452.1 984916 R 360910 CDS YP_785453.1 187477429 6265065 complement(986324..986614) 1 NC_010645.1 hypothetical protein 986614 6265065 BAV0926 Bordetella avium 197N hypothetical protein YP_785453.1 986324 R 360910 CDS YP_785454.1 187477430 6265066 986747..988063 1 NC_010645.1 uracil permease 988063 pyrP 6265066 pyrP Bordetella avium 197N uracil permease YP_785454.1 986747 D 360910 CDS YP_785455.1 187477431 6267616 988661..989137 1 NC_010645.1 transcription elongation factor 989137 greA 6267616 greA Bordetella avium 197N transcription elongation factor YP_785455.1 988661 D 360910 CDS YP_785456.1 187477432 6267114 complement(989315..989908) 1 NC_010645.1 hypothetical protein 989908 6267114 BAV0929 Bordetella avium 197N hypothetical protein YP_785456.1 989315 R 360910 CDS YP_785457.1 187477433 6265067 989927..990586 1 NC_010645.1 ribosomal RNA large subunit methyltransferase j 990586 ftsJ 6265067 ftsJ Bordetella avium 197N ribosomal RNA large subunit methyltransferase j YP_785457.1 989927 D 360910 CDS YP_785458.1 187477434 6267037 990738..992621 1 NC_010645.1 cell division protein 992621 ftsH 6267037 ftsH Bordetella avium 197N cell division protein YP_785458.1 990738 D 360910 CDS YP_785459.1 187477435 6267035 992638..993474 1 NC_010645.1 dihydropteroate synthase 993474 dhpS 6267035 dhpS Bordetella avium 197N dihydropteroate synthase YP_785459.1 992638 D 360910 CDS YP_785460.1 187477436 6266879 993471..994814 1 NC_010645.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 994814 glmM 6266879 glmM Bordetella avium 197N phosphoglucosamine mutase YP_785460.1 993471 D 360910 CDS YP_785461.1 187477437 6267076 995001..995816 1 NC_010645.1 hypothetical protein 995816 6267076 BAV0934 Bordetella avium 197N hypothetical protein YP_785461.1 995001 D 360910 CDS YP_785462.1 187477438 6265068 complement(995867..997348) 1 NC_010645.1 exopolyphosphatase 997348 ppx 6265068 ppx Bordetella avium 197N exopolyphosphatase YP_785462.1 995867 R 360910 CDS YP_785463.1 187477439 6267565 997666..999741 1 NC_010645.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 999741 ppk 6267565 ppk Bordetella avium 197N polyphosphate kinase YP_785463.1 997666 D 360910 CDS YP_785464.1 187477440 6265070 1010001..1011038 1 NC_010645.1 phosphate ABC transporter phosphate-binding periplasmic protein 1011038 phoS 6265070 phoS Bordetella avium 197N phosphate ABC transporter phosphate-binding periplasmic protein YP_785464.1 1010001 D 360910 CDS YP_785465.1 187477441 6267531 1011170..1012183 1 NC_010645.1 phosphate ABC transporter permease 1012183 phoW 6267531 phoW Bordetella avium 197N phosphate ABC transporter permease YP_785465.1 1011170 D 360910 CDS YP_785466.1 187477442 6267535 1012198..1013055 1 NC_010645.1 phosphate ABC transporter permease 1013055 phoT 6267535 phoT Bordetella avium 197N phosphate ABC transporter permease YP_785466.1 1012198 D 360910 CDS YP_785467.1 187477443 6267532 1013083..1013859 1 NC_010645.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1013859 pstB 6267532 pstB Bordetella avium 197N phosphate transporter ATP-binding protein YP_785467.1 1013083 D 360910 CDS YP_785468.1 187477444 6267879 complement(1014558..1014815) 1 NC_010645.1 hypothetical protein 1014815 6267879 BAV0943 Bordetella avium 197N hypothetical protein YP_785468.1 1014558 R 360910 CDS YP_785469.1 187477445 6265071 complement(1014817..1015050) 1 NC_010645.1 hypothetical protein 1015050 6265071 BAV0944 Bordetella avium 197N hypothetical protein YP_785469.1 1014817 R 360910 CDS YP_785470.1 187477446 6265072 1015270..1016067 1 NC_010645.1 GntR family transcriptional regulator 1016067 6265072 BAV0945 Bordetella avium 197N GntR family transcriptional regulator YP_785470.1 1015270 D 360910 CDS YP_785471.1 187477447 6265073 1016084..1017289 1 NC_010645.1 ABC transporter substrate-binding protein 1017289 6265073 BAV0946 Bordetella avium 197N ABC transporter substrate-binding protein YP_785471.1 1016084 D 360910 CDS YP_785472.1 187477448 6265074 <1017292..1018164 1 NC_010645.1 ABC transporter permease 1018164 6265074 BAV0947 Bordetella avium 197N ABC transporter permease YP_785472.1 <1017292 D 360910 CDS YP_785473.1 187477449 6265075 1018167..1019132 1 NC_010645.1 ABC transporter permease 1019132 6265075 BAV0948 Bordetella avium 197N ABC transporter permease YP_785473.1 1018167 D 360910 CDS YP_785474.1 187477450 6265076 <1019125..1019880 1 NC_010645.1 ABC transporter ATP-binding protein 1019880 6265076 BAV0949 Bordetella avium 197N ABC transporter ATP-binding protein YP_785474.1 <1019125 D 360910 CDS YP_785475.1 187477451 6265077 1019877..1020587 1 NC_010645.1 ABC transporter ATP-binding protein 1020587 6265077 BAV0950 Bordetella avium 197N ABC transporter ATP-binding protein YP_785475.1 1019877 D 360910 CDS YP_785476.1 187477452 6265078 1020590..1021858 1 NC_010645.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 1021858 leuC1 6265078 leuC1 Bordetella avium 197N 3-isopropylmalate dehydratase large subunit YP_785476.1 1020590 D 360910 CDS YP_785477.1 187477453 6267289 1021855..1022355 1 NC_010645.1 3-isopropylmalate dehydratase small subunit 1022355 leuD1 6267289 leuD1 Bordetella avium 197N 3-isopropylmalate dehydratase small subunit YP_785477.1 1021855 D 360910 CDS YP_785478.1 187477454 6267291 1022366..1024036 1 NC_010645.1 hydantoin utilization protein B 1024036 hyuB 6267291 hyuB Bordetella avium 197N hydantoin utilization protein B YP_785478.1 1022366 D 360910 CDS YP_785479.1 187477455 6267227 1024033..1026078 1 NC_010645.1 hydantoin utilization protein A 1026078 hyuA 6267227 hyuA Bordetella avium 197N hydantoin utilization protein A YP_785479.1 1024033 D 360910 CDS YP_785480.1 187477456 6267225 <1026080..1026712 1 NC_010645.1 isochorismatase hydrolase 1026712 6267225 BAV0955 Bordetella avium 197N isochorismatase hydrolase YP_785480.1 <1026080 D 360910 CDS YP_785481.1 187477457 6265079 <1026709..1028106 1 NC_010645.1 ; Also similar to BAV3254 (29.2 38d); reductase flavoprotein subunit 1028106 6265079 BAV0956 Bordetella avium 197N reductase flavoprotein subunit YP_785481.1 <1026709 D 360910 CDS YP_785482.1 187477458 6265080 1028120..1028983 1 NC_010645.1 carboxyvinyl-carboxyphosphonate phosphorylmutase 1028983 6265080 BAV0957 Bordetella avium 197N carboxyvinyl-carboxyphosphonate phosphorylmutase YP_785482.1 1028120 D 360910 CDS YP_785483.1 187477459 6265081 complement(1029043..1030023) 1 NC_010645.1 hypothetical protein 1030023 6265081 BAV0958 Bordetella avium 197N hypothetical protein YP_785483.1 1029043 R 360910 CDS YP_785484.1 187477460 6265082 complement(1030293..1031741) 1 NC_010645.1 D-aminoacylase 1031741 dan 6265082 dan Bordetella avium 197N D-aminoacylase YP_785484.1 1030293 R 360910 CDS YP_785485.1 187477461 6266852 complement(1031767..1033062) 1 NC_010645.1 Also similar to BAV2005 (31.566 38d), BAV2030 (44.724 38d), BAV2366 (36.170 0d); D-amino acid dehydrogenase small subunit 1033062 dadA1 6266852 dadA1 Bordetella avium 197N D-amino acid dehydrogenase small subunit YP_785485.1 1031767 R 360910 CDS YP_785486.1 187477462 6266848 complement(1033066..>1034727) 1 NC_010645.1 acetolactate synthase large subunit >1034727 6266848 BAV0961 Bordetella avium 197N acetolactate synthase large subunit YP_785486.1 1033066 R 360910 CDS YP_785487.1 187477463 6265083 complement(1034724..1035374) 1 NC_010645.1 TetR family transcriptional regulator 1035374 6265083 BAV0962 Bordetella avium 197N TetR family transcriptional regulator YP_785487.1 1034724 R 360910 CDS YP_785488.1 187477464 6265084 complement(1035671..1036912) 1 NC_010645.1 transporter 1036912 6265084 BAV0963 Bordetella avium 197N transporter YP_785488.1 1035671 R 360910 CDS YP_785489.1 187477465 6265085 complement(1036909..1038123) 1 NC_010645.1 amidohydrolase/peptidase 1038123 6265085 BAV0964 Bordetella avium 197N amidohydrolase/peptidase YP_785489.1 1036909 R 360910 CDS YP_785490.1 187477466 6265086 complement(1038120..1038614) 1 NC_010645.1 6,7-dimethyl-8-ribityllumazine synthase 1038614 ribH 6265086 ribH Bordetella avium 197N 6,7-dimethyl-8-ribityllumazine synthase YP_785490.1 1038120 R 360910 CDS YP_785491.1 187477467 6267656 complement(1038672..1040147) 1 NC_010645.1 permease 1040147 6267656 BAV0966 Bordetella avium 197N permease YP_785491.1 1038672 R 360910 CDS YP_785492.1 187477468 6265087 complement(1040144..1040356) 1 NC_010645.1 membrane protein 1040356 6265087 BAV0967 Bordetella avium 197N membrane protein YP_785492.1 1040144 R 360910 CDS YP_785493.1 187477469 6265088 complement(1040492..1041925) 1 NC_010645.1 succinate-semialdehyde dehydrogenase (NADP+) 1041925 gabD 6265088 gabD Bordetella avium 197N succinate-semialdehyde dehydrogenase (NADP+) YP_785493.1 1040492 R 360910 CDS YP_785494.1 187477470 6267048 complement(1042028..1042525) 1 NC_010645.1 4-hydroxyphenylacetate 3-monooxygenase,reductase component 1042525 hpaC 6267048 hpaC Bordetella avium 197N 4-hydroxyphenylacetate 3-monooxygenase,reductase component YP_785494.1 1042028 R 360910 CDS YP_785495.1 187477471 6267194 complement(1042595..1043959) 1 NC_010645.1 desulfurization enzyme 1043959 6267194 BAV0970 Bordetella avium 197N desulfurization enzyme YP_785495.1 1042595 R 360910 CDS YP_785496.1 187477472 6265089 1044176..1044742 1 NC_010645.1 transcriptional regulator 1044742 6265089 BAV0971 Bordetella avium 197N transcriptional regulator YP_785496.1 1044176 D 360910 CDS YP_785497.1 187477473 6265090 complement(1045096..1045539) 1 NC_010645.1 hypothetical protein 1045539 6265090 BAV0972 Bordetella avium 197N hypothetical protein YP_785497.1 1045096 R 360910 CDS YP_785498.1 187477474 6265091 complement(1045648..1046025) 1 NC_010645.1 hypothetical protein 1046025 6265091 BAV0973 Bordetella avium 197N hypothetical protein YP_785498.1 1045648 R 360910 CDS YP_785499.1 187477475 6265092 complement(1046452..1047231) 1 NC_010645.1 enoyl-CoA hydratase/isomerase family protein 1047231 6265092 BAV0974 Bordetella avium 197N enoyl-CoA hydratase/isomerase family protein YP_785499.1 1046452 R 360910 CDS YP_785500.1 187477476 6265093 complement(1047252..1048019) 1 NC_010645.1 GntR family transcriptional regulator 1048019 6265093 BAV0975 Bordetella avium 197N GntR family transcriptional regulator YP_785500.1 1047252 R 360910 CDS YP_785501.1 187477477 6265094 complement(1048031..1048831) 1 NC_010645.1 hydrolase 1048831 6265094 BAV0976 Bordetella avium 197N hydrolase YP_785501.1 1048031 R 360910 CDS YP_785502.1 187477478 6265095 complement(1048834..1049205) 1 NC_010645.1 hypothetical protein 1049205 6265095 BAV0977 Bordetella avium 197N hypothetical protein YP_785502.1 1048834 R 360910 CDS YP_785503.1 187477479 6265096 complement(1049202..1050722) 1 NC_010645.1 substrate-CoA ligase 1050722 6265096 BAV0978 Bordetella avium 197N substrate-CoA ligase YP_785503.1 1049202 R 360910 CDS YP_785504.1 187477480 6265097 complement(1050715..1051443) 1 NC_010645.1 ABC transporter ATP-binding protein 1051443 6265097 BAV0979 Bordetella avium 197N ABC transporter ATP-binding protein YP_785504.1 1050715 R 360910 CDS YP_785505.1 187477481 6265098 complement(1051436..1052206) 1 NC_010645.1 ABC transporter ATP-binding protein 1052206 6265098 BAV0980 Bordetella avium 197N ABC transporter ATP-binding protein YP_785505.1 1051436 R 360910 CDS YP_785506.1 187477482 6265099 complement(1052203..1053186) 1 NC_010645.1 ABC transporter permease 1053186 6265099 BAV0981 Bordetella avium 197N ABC transporter permease YP_785506.1 1052203 R 360910 CDS YP_785507.1 187477483 6265100 complement(1053183..1054040) 1 NC_010645.1 ABC transporter permease 1054040 6265100 BAV0982 Bordetella avium 197N ABC transporter permease YP_785507.1 1053183 R 360910 CDS YP_785508.1 187477484 6265101 complement(1054096..1055253) 1 NC_010645.1 ABC transporter substrate-binding protein 1055253 6265101 BAV0983 Bordetella avium 197N ABC transporter substrate-binding protein YP_785508.1 1054096 R 360910 CDS YP_785509.1 187477485 6265102 1055543..1055851 1 NC_010645.1 membrane protein 1055851 6265102 BAV0984 Bordetella avium 197N membrane protein YP_785509.1 1055543 D 360910 CDS YP_785510.1 187477486 6265103 complement(1056308..1057390) 1 NC_010645.1 hypothetical protein 1057390 6265103 BAV0987 Bordetella avium 197N hypothetical protein YP_785510.1 1056308 R 360910 CDS YP_785511.1 187477487 6265104 complement(1057432..1058382) 1 NC_010645.1 hypothetical protein 1058382 6265104 BAV0988 Bordetella avium 197N hypothetical protein YP_785511.1 1057432 R 360910 CDS YP_785512.1 187477488 6265105 1058481..1059419 1 NC_010645.1 An insertion within codon 40 in this gene results in a mutant strain that does not produce dermonecrotic toxin and has decreased rate of attachment to turkey trachea, in vivo and in vitro.; LysR family transcriptional regulator 1059419 6265105 BAV0989 Bordetella avium 197N LysR family transcriptional regulator YP_785512.1 1058481 D 360910 CDS YP_785513.1 187477489 6265106 <1059683..1060048 1 NC_010645.1 hypothetical protein 1060048 6265106 BAV0990 Bordetella avium 197N hypothetical protein YP_785513.1 <1059683 D 360910 CDS YP_785514.1 187477490 6265107 <1060686..1062263 1 NC_010645.1 ; Also similar to BAV3111 (54.6 38d.); cytochrome D ubiquinol oxidase subunit I 1062263 cydA1 6265107 cydA1 Bordetella avium 197N cytochrome D ubiquinol oxidase subunit I YP_785514.1 <1060686 D 360910 CDS YP_785515.1 187477491 6266828 1062266..1063399 1 NC_010645.1 Also similar to BAV3110 (44.3 38d.); cytochrome d ubiquinol oxidase subunit II 1063399 cydB1 6266828 cydB1 Bordetella avium 197N cytochrome d ubiquinol oxidase subunit II YP_785515.1 1062266 D 360910 CDS YP_785516.1 187477492 6266830 1063410..1063616 1 NC_010645.1 membrane protein 1063616 6266830 BAV0993 Bordetella avium 197N membrane protein YP_785516.1 1063410 D 360910 CDS YP_785517.1 187477493 6265108 <1063683..1064183 1 NC_010645.1 membrane protein 1064183 6265108 BAV0994 Bordetella avium 197N membrane protein YP_785517.1 <1063683 D 360910 CDS YP_785518.1 187477494 6265109 1064493..1064996 1 NC_010645.1 membrane protein 1064996 6265109 BAV0995 Bordetella avium 197N membrane protein YP_785518.1 1064493 D 360910 CDS YP_785519.1 187477495 6265110 complement(1065024..1066796) 1 NC_010645.1 amidase 1066796 6265110 BAV0996 Bordetella avium 197N amidase YP_785519.1 1065024 R 360910 CDS YP_785520.1 187477496 6265111 complement(1066806..1067813) 1 NC_010645.1 oligopeptide ABC transporter ATP-binding protein 1067813 appF 6265111 appF Bordetella avium 197N oligopeptide ABC transporter ATP-binding protein YP_785520.1 1066806 R 360910 CDS YP_785521.1 187477497 6266636 complement(1067810..1068877) 1 NC_010645.1 oligopeptide ABC transporter ATP-binding protein 1068877 appD 6266636 appD Bordetella avium 197N oligopeptide ABC transporter ATP-binding protein YP_785521.1 1067810 R 360910 CDS YP_785522.1 187477498 6266635 complement(1068887..1069783) 1 NC_010645.1 oligopeptide ABC transporter permease 1069783 appC 6266635 appC Bordetella avium 197N oligopeptide ABC transporter permease YP_785522.1 1068887 R 360910 CDS YP_785523.1 187477499 6266634 complement(1069804..1070739) 1 NC_010645.1 oligopeptide ABC transporter permease 1070739 6266634 BAV1000 Bordetella avium 197N oligopeptide ABC transporter permease YP_785523.1 1069804 R 360910 CDS YP_785524.1 187477500 6265112 complement(1070773..1072353) 1 NC_010645.1 oligopeptide ABC transporteroligopeptide-binding protein 1072353 6265112 BAV1001 Bordetella avium 197N oligopeptide ABC transporteroligopeptide-binding protein YP_785524.1 1070773 R 360910 CDS YP_785525.1 187477501 6265113 complement(1072402..1073841) 1 NC_010645.1 peptidase 1073841 6265113 BAV1002 Bordetella avium 197N peptidase YP_785525.1 1072402 R 360910 CDS YP_785526.1 187477502 6265114 complement(1074163..1075452) 1 NC_010645.1 signaling protein 1075452 6265114 BAV1003 Bordetella avium 197N signaling protein YP_785526.1 1074163 R 360910 CDS YP_785527.1 187477503 6265115 complement(1075800..1076273) 1 NC_010645.1 hypothetical protein 1076273 6265115 BAV1004 Bordetella avium 197N hypothetical protein YP_785527.1 1075800 R 360910 CDS YP_785528.1 187477504 6265116 complement(1076399..1076728) 1 NC_010645.1 hypothetical protein 1076728 6265116 BAV1005 Bordetella avium 197N hypothetical protein YP_785528.1 1076399 R 360910 CDS YP_785529.1 187477505 6265117 complement(1076850..1077167) 1 NC_010645.1 hypothetical protein 1077167 6265117 BAV1006 Bordetella avium 197N hypothetical protein YP_785529.1 1076850 R 360910 CDS YP_785530.1 187477506 6265118 complement(1077453..1079096) 1 NC_010645.1 Na+/H+ antiporter 1079096 6265118 BAV1007 Bordetella avium 197N Na+/H+ antiporter YP_785530.1 1077453 R 360910 CDS YP_785531.1 187477507 6265119 complement(1079093..1080574) 1 NC_010645.1 multidrug efflux pump 1080574 6265119 BAV1008 Bordetella avium 197N multidrug efflux pump YP_785531.1 1079093 R 360910 CDS YP_785532.1 187477508 6265120 complement(1080564..1082453) 1 NC_010645.1 component of efflux pump 1082453 6265120 BAV1009 Bordetella avium 197N component of efflux pump YP_785532.1 1080564 R 360910 CDS YP_785533.1 187477509 6265121 complement(1082440..1083492) 1 NC_010645.1 with MdtO and MdtP is involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance protein MdtN 1083492 6265121 BAV1010 Bordetella avium 197N multidrug resistance protein MdtN YP_785533.1 1082440 R 360910 CDS YP_785534.1 187477510 6265122 complement(1083494..1083784) 1 NC_010645.1 membrane protein 1083784 6265122 BAV1011 Bordetella avium 197N membrane protein YP_785534.1 1083494 R 360910 CDS YP_785535.1 187477511 6265123 complement(1084002..1084538) 1 NC_010645.1 hypothetical protein 1084538 6265123 BAV1012 Bordetella avium 197N hypothetical protein YP_785535.1 1084002 R 360910 CDS YP_785536.1 187477512 6265124 1084732..1086201 1 NC_010645.1 X-Pro dipeptidase 1086201 6265124 BAV1013 Bordetella avium 197N X-Pro dipeptidase YP_785536.1 1084732 D 360910 CDS YP_785537.1 187477513 6265125 complement(1086223..1086492) 1 NC_010645.1 hypothetical protein 1086492 6265125 BAV1014 Bordetella avium 197N hypothetical protein YP_785537.1 1086223 R 360910 CDS YP_785538.1 187477514 6265126 complement(1086493..1087188) 1 NC_010645.1 protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 1087188 marC 6265126 marC Bordetella avium 197N multiple drug resistance protein MarC YP_785538.1 1086493 R 360910 CDS YP_785539.1 187477515 6267329 complement(1087185..1088075) 1 NC_010645.1 GntR family transcriptional regulator 1088075 6267329 BAV1016 Bordetella avium 197N GntR family transcriptional regulator YP_785539.1 1087185 R 360910 CDS YP_785540.1 187477516 6265127 complement(1088164..1090743) 1 NC_010645.1 catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1090743 acnA 6265127 acnA Bordetella avium 197N aconitate hydratase YP_785540.1 1088164 R 360910 CDS YP_785541.1 187477517 6266584 1090950..1091603 1 NC_010645.1 catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 1091603 tpm 6266584 tpm Bordetella avium 197N thiopurine S-methyltransferase YP_785541.1 1090950 D 360910 CDS YP_785542.1 187477518 6267823 1091725..1091883 1 NC_010645.1 Seems to be unique to Bordetellae.; lipoprotein 1091883 6267823 BAV1019 Bordetella avium 197N lipoprotein YP_785542.1 1091725 D 360910 CDS YP_785543.1 187477519 6265128 1092031..1093650 1 NC_010645.1 methyl-accepting chemotaxis transducer 1093650 6265128 BAV1020 Bordetella avium 197N methyl-accepting chemotaxis transducer YP_785543.1 1092031 D 360910 CDS YP_785544.1 187477520 6265129 1093656..1094144 1 NC_010645.1 chemotaxis protein 1094144 cheW 6265129 cheW Bordetella avium 197N chemotaxis protein YP_785544.1 1093656 D 360910 CDS YP_785545.1 187477521 6266779 1094141..1095361 1 NC_010645.1 Similar to N-terminal region of Escherichia coli chemotaxis protein methyltransferase cheR SWALL:CHER_ECOLI (SWALL:P07364) (286 aa) fasta scores: E(): 1.8e-11, 33.46 id in 257 aa; chemotaxis protein methyltransferase 1095361 cheR 6266779 cheR Bordetella avium 197N chemotaxis protein methyltransferase YP_785545.1 1094141 D 360910 CDS YP_785546.1 187477522 6266777 1095361..1095981 1 NC_010645.1 chemotaxis protein 1095981 6266777 BAV1023 Bordetella avium 197N chemotaxis protein YP_785546.1 1095361 D 360910 CDS YP_785547.1 187477523 6265130 1095978..1098197 1 NC_010645.1 chemotaxis protein 1098197 cheA 6265130 cheA Bordetella avium 197N chemotaxis protein YP_785547.1 1095978 D 360910 CDS YP_785548.1 187477524 6266771 1098194..1099222 1 NC_010645.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1099222 cheB 6266771 cheB Bordetella avium 197N chemotaxis-specific methylesterase YP_785548.1 1098194 D 360910 CDS YP_785549.1 187477525 6266773 1099234..1100244 1 NC_010645.1 signaling/response regulator protein 1100244 wspR 6266773 wspR Bordetella avium 197N signaling/response regulator protein YP_785549.1 1099234 D 360910 CDS YP_785550.1 187477526 6267937 1100450..1101157 1 NC_010645.1 hypothetical protein 1101157 6267937 BAV1027 Bordetella avium 197N hypothetical protein YP_785550.1 1100450 D 360910 CDS YP_785551.1 187477527 6265131 complement(1101228..1102772) 1 NC_010645.1 extracellular solute-binding protein 1102772 6265131 BAV1028 Bordetella avium 197N extracellular solute-binding protein YP_785551.1 1101228 R 360910 CDS YP_785552.1 187477528 6265132 complement(1102797..1103927) 1 NC_010645.1 acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase 1103927 aat 6265132 aat Bordetella avium 197N acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase YP_785552.1 1102797 R 360910 CDS YP_785553.1 187477529 6266571 1104331..1105068 1 NC_010645.1 hypothetical protein 1105068 6266571 BAV1030 Bordetella avium 197N hypothetical protein YP_785553.1 1104331 D 360910 CDS YP_785554.1 187477530 6265133 1105226..1106122 1 NC_010645.1 LysR family transcriptional regulator 1106122 6265133 BAV1031 Bordetella avium 197N LysR family transcriptional regulator YP_785554.1 1105226 D 360910 CDS YP_785555.1 187477531 6265134 complement(1106129..1106707) 1 NC_010645.1 hypothetical protein 1106707 6265134 BAV1032 Bordetella avium 197N hypothetical protein YP_785555.1 1106129 R 360910 CDS YP_785556.1 187477532 6265135 complement(1106725..1107687) 1 NC_010645.1 hypothetical protein 1107687 6265135 BAV1033 Bordetella avium 197N hypothetical protein YP_785556.1 1106725 R 360910 CDS YP_785557.1 187477533 6265136 complement(1107726..1108628) 1 NC_010645.1 dehydrogenase 1108628 6265136 BAV1034 Bordetella avium 197N dehydrogenase YP_785557.1 1107726 R 360910 CDS YP_785558.1 187477534 6265137 1108767..1109717 1 NC_010645.1 LysR family transcriptional regulator 1109717 6265137 BAV1035 Bordetella avium 197N LysR family transcriptional regulator YP_785558.1 1108767 D 360910 CDS YP_785559.1 187477535 6265138 1109785..1110567 1 NC_010645.1 metallo-phosphoesterase 1110567 6265138 BAV1036 Bordetella avium 197N metallo-phosphoesterase YP_785559.1 1109785 D 360910 CDS YP_785560.1 187477536 6265139 1110609..1111349 1 NC_010645.1 membrane-associated phosphatase 1111349 6265139 BAV1037 Bordetella avium 197N membrane-associated phosphatase YP_785560.1 1110609 D 360910 CDS YP_785561.1 187477537 6265140 complement(1111318..1111731) 1 NC_010645.1 hypothetical protein 1111731 6265140 BAV1038 Bordetella avium 197N hypothetical protein YP_785561.1 1111318 R 360910 CDS YP_785562.1 187477538 6265141 complement(1111728..1112150) 1 NC_010645.1 thioesterase 1112150 6265141 BAV1039 Bordetella avium 197N thioesterase YP_785562.1 1111728 R 360910 CDS YP_785563.1 187477539 6265142 complement(1112152..1112754) 1 NC_010645.1 TetR family transcriptional regulator 1112754 6265142 BAV1040 Bordetella avium 197N TetR family transcriptional regulator YP_785563.1 1112152 R 360910 CDS YP_785564.1 187477540 6265143 1113078..1114241 1 NC_010645.1 outer membrane porin protein 1114241 6265143 BAV1041 Bordetella avium 197N outer membrane porin protein YP_785564.1 1113078 D 360910 CDS YP_785565.1 187477541 6265144 1114437..1114796 1 NC_010645.1 NADH dehydrogenase I subunit A 1114796 nuoA 6265144 nuoA Bordetella avium 197N NADH dehydrogenase I subunit A YP_785565.1 1114437 D 360910 CDS YP_785566.1 187477542 6267433 1114827..1115303 1 NC_010645.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1115303 nuoB 6267433 nuoB Bordetella avium 197N NADH dehydrogenase subunit B YP_785566.1 1114827 D 360910 CDS YP_785567.1 187477543 6267434 1115369..1115989 1 NC_010645.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 1115989 nuoC 6267434 nuoC Bordetella avium 197N NADH dehydrogenase subunit C YP_785567.1 1115369 D 360910 CDS YP_785568.1 187477544 6267435 1115992..1117248 1 NC_010645.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1117248 nuoD 6267435 nuoD Bordetella avium 197N NADH dehydrogenase subunit D YP_785568.1 1115992 D 360910 CDS YP_785569.1 187477545 6267436 1117290..1117784 1 NC_010645.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 1117784 nuoE 6267436 nuoE Bordetella avium 197N NADH dehydrogenase subunit E YP_785569.1 1117290 D 360910 CDS YP_785570.1 187477546 6267437 1117781..1119148 1 NC_010645.1 NADH dehydrogenase I subunit F 1119148 nuoF 6267437 nuoF Bordetella avium 197N NADH dehydrogenase I subunit F YP_785570.1 1117781 D 360910 CDS YP_785571.1 187477547 6267438 1119164..1121491 1 NC_010645.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 1121491 nuoG 6267438 nuoG Bordetella avium 197N NADH dehydrogenase subunit G YP_785571.1 1119164 D 360910 CDS YP_785572.1 187477548 6267439 1121491..1122564 1 NC_010645.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1122564 nuoH 6267439 nuoH Bordetella avium 197N NADH dehydrogenase subunit H YP_785572.1 1121491 D 360910 CDS YP_785573.1 187477549 6267440 1122586..1123074 1 NC_010645.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1123074 nuoI 6267440 nuoI Bordetella avium 197N NADH dehydrogenase subunit I YP_785573.1 1122586 D 360910 CDS YP_785574.1 187477550 6267441 1123092..1123724 1 NC_010645.1 NADH dehydrogenase I subunit J 1123724 nuoJ 6267441 nuoJ Bordetella avium 197N NADH dehydrogenase I subunit J YP_785574.1 1123092 D 360910 CDS YP_785575.1 187477551 6267442 1123721..1124029 1 NC_010645.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1124029 nuoK 6267442 nuoK Bordetella avium 197N NADH dehydrogenase subunit K YP_785575.1 1123721 D 360910 CDS YP_785576.1 187477552 6267443 1124047..1126062 1 NC_010645.1 NADH dehydrogenase I subunit L 1126062 nuoL 6267443 nuoL Bordetella avium 197N NADH dehydrogenase I subunit L YP_785576.1 1124047 D 360910 CDS YP_785577.1 187477553 6267444 1126059..1127561 1 NC_010645.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 1127561 nuoM 6267444 nuoM Bordetella avium 197N NADH dehydrogenase subunit M YP_785577.1 1126059 D 360910 CDS YP_785578.1 187477554 6267445 1127571..1129058 1 NC_010645.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1129058 nuoN 6267445 nuoN Bordetella avium 197N NADH dehydrogenase subunit N YP_785578.1 1127571 D 360910 CDS YP_785579.1 187477555 6267446 1129055..1129369 1 NC_010645.1 membrane protein 1129369 6267446 BAV1056 Bordetella avium 197N membrane protein YP_785579.1 1129055 D 360910 CDS YP_785580.1 187477556 6265145 <1129876..1130217 1 NC_010645.1 hypothetical protein 1130217 6265145 BAV1057 Bordetella avium 197N hypothetical protein YP_785580.1 <1129876 D 360910 CDS YP_785581.1 187477557 6265146 <1130438..1130890 1 NC_010645.1 hypothetical protein 1130890 6265146 BAV1058 Bordetella avium 197N hypothetical protein YP_785581.1 <1130438 D 360910 CDS YP_785582.1 187477558 6265147 complement(1130865..1131353) 1 NC_010645.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1131353 ispF 6265147 ispF Bordetella avium 197N 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_785582.1 1130865 R 360910 CDS YP_785583.1 187477559 6267256 complement(1131350..1132036) 1 NC_010645.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1132036 ispD 6267256 ispD Bordetella avium 197N 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_785583.1 1131350 R 360910 CDS YP_785584.1 187477560 6267254 <1132089..1135526 1 NC_010645.1 transcription-repair coupling factor 1135526 mfd 6267254 mfd Bordetella avium 197N transcription-repair coupling factor YP_785584.1 <1132089 D 360910 CDS YP_785585.1 187477561 6267347 1135552..1136409 1 NC_010645.1 phosphoserine phosphatase 1136409 serB 6267347 serB Bordetella avium 197N phosphoserine phosphatase YP_785585.1 1135552 D 360910 CDS YP_785586.1 187477562 6267754 complement(1136484..1137002) 1 NC_010645.1 antioxidant protein 1137002 ahpD 6267754 ahpD Bordetella avium 197N antioxidant protein YP_785586.1 1136484 R 360910 CDS YP_785587.1 187477563 6266608 complement(1137061..1137609) 1 NC_010645.1 alkyl hydroperoxide reductase 1137609 ahpC 6266608 ahpC Bordetella avium 197N alkyl hydroperoxide reductase YP_785587.1 1137061 R 360910 CDS YP_785588.1 187477564 6266607 complement(1137672..1139114) 1 NC_010645.1 two component system sensor kinase 1139114 risS 6266607 risS Bordetella avium 197N two component system sensor kinase YP_785588.1 1137672 R 360910 CDS YP_785589.1 187477565 6267662 complement(1139101..1139835) 1 NC_010645.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 1139835 ompR 6267662 ompR Bordetella avium 197N osmolarity response regulator YP_785589.1 1139101 R 360910 CDS YP_785590.1 187477566 6267661 1139965..1141236 1 NC_010645.1 acetyltransferase 1141236 6267661 BAV1067 Bordetella avium 197N acetyltransferase YP_785590.1 1139965 D 360910 CDS YP_785591.1 187477567 6265148 <1141470..1142090 1 NC_010645.1 uracil-DNA glycosylase 1142090 6265148 BAV1068 Bordetella avium 197N uracil-DNA glycosylase YP_785591.1 <1141470 D 360910 CDS YP_785592.1 187477568 6265149 complement(1142108..1143424) 1 NC_010645.1 lysophospholipid transporter LplT 1143424 6265149 BAV1069 Bordetella avium 197N lysophospholipid transporter LplT YP_785592.1 1142108 R 360910 CDS YP_785593.1 187477569 6265150 1143626..1147222 1 NC_010645.1 chromosome partition protein 1147222 6265150 BAV1070 Bordetella avium 197N chromosome partition protein YP_785593.1 1143626 D 360910 CDS YP_785594.1 187477570 6265151 1147267..1148307 1 NC_010645.1 membrane protein 1148307 6265151 BAV1071 Bordetella avium 197N membrane protein YP_785594.1 1147267 D 360910 CDS YP_785595.1 187477571 6265152 1148307..1150394 1 NC_010645.1 DNA ligase 1150394 dnaL 6265152 dnaL Bordetella avium 197N DNA ligase YP_785595.1 1148307 D 360910 CDS YP_785596.1 187477572 6266894 complement(1150454..1151230) 1 NC_010645.1 protein foldase 1151230 6266894 BAV1073 Bordetella avium 197N protein foldase YP_785596.1 1150454 R 360910 CDS YP_785597.1 187477573 6265153 complement(1151270..1151539) 1 NC_010645.1 Also similar to BAV3311 (37.6 38d).; BolA-like protein 1151539 6265153 BAV1074 Bordetella avium 197N BolA-like protein YP_785597.1 1151270 R 360910 CDS YP_785598.1 187477574 6265154 complement(1151541..1152101) 1 NC_010645.1 intracellular septation protein 1152101 ispZ 6265154 ispZ Bordetella avium 197N intracellular septation protein YP_785598.1 1151541 R 360910 CDS YP_785599.1 187477575 6267258 complement(1152098..1152493) 1 NC_010645.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1152493 msrB 6267258 msrB Bordetella avium 197N methionine sulfoxide reductase B YP_785599.1 1152098 R 360910 CDS YP_785600.1 187477576 6267393 1152544..1153221 1 NC_010645.1 ABC transporter ATP-binding protein 1153221 6267393 BAV1077 Bordetella avium 197N ABC transporter ATP-binding protein YP_785600.1 1152544 D 360910 CDS YP_785601.1 187477577 6265155 1153218..1153805 1 NC_010645.1 cobalt ABC transporter permease 1153805 6265155 BAV1078 Bordetella avium 197N cobalt ABC transporter permease YP_785601.1 1153218 D 360910 CDS YP_785602.1 187477578 6265156 1153844..1154395 1 NC_010645.1 BioY family membrane protein 1154395 6265156 BAV1079 Bordetella avium 197N BioY family membrane protein YP_785602.1 1153844 D 360910 CDS YP_785603.1 187477579 6265157 1154617..1155780 1 NC_010645.1 ABC transporter substrate-binding protein 1155780 6265157 BAV1080 Bordetella avium 197N ABC transporter substrate-binding protein YP_785603.1 1154617 D 360910 CDS YP_785604.1 187477580 6265158 1155896..1156933 1 NC_010645.1 branched-chain amino acid ABC transporter permease 1156933 6265158 BAV1081 Bordetella avium 197N branched-chain amino acid ABC transporter permease YP_785604.1 1155896 D 360910 CDS YP_785605.1 187477581 6265159 1156937..1158775 1 NC_010645.1 branched-chain amino acid ABC transporter ATP-binding/permease 1158775 6265159 BAV1082 Bordetella avium 197N branched-chain amino acid ABC transporter ATP-binding/permease YP_785605.1 1156937 D 360910 CDS YP_785606.1 187477582 6265160 1158772..1159512 1 NC_010645.1 branched-chain amino acid ABC transporter ATP-binding protein 1159512 6265160 BAV1083 Bordetella avium 197N branched-chain amino acid ABC transporter ATP-binding protein YP_785606.1 1158772 D 360910 CDS YP_785607.1 187477583 6265161 complement(1159522..1161603) 1 NC_010645.1 Also similar to BAV1803 (49.7 38d.).; non-hemolytic phospholipase C 1161603 plcN1 6265161 plcN1 Bordetella avium 197N non-hemolytic phospholipase C YP_785607.1 1159522 R 360910 CDS YP_785608.1 187477584 6267542 complement(1161754..1162593) 1 NC_010645.1 aminotransferase 1162593 ilvE 6267542 ilvE Bordetella avium 197N aminotransferase YP_785608.1 1161754 R 360910 CDS YP_785609.1 187477585 6267239 complement(1162877..1163860) 1 NC_010645.1 ABC transporter permease 1163860 6267239 BAV1086 Bordetella avium 197N ABC transporter permease YP_785609.1 1162877 R 360910 CDS YP_785610.1 187477586 6265162 complement(1163857..1164744) 1 NC_010645.1 ABC transporter permease 1164744 6265162 BAV1087 Bordetella avium 197N ABC transporter permease YP_785610.1 1163857 R 360910 CDS YP_785611.1 187477587 6265163 complement(1164838..1166052) 1 NC_010645.1 ABC transporter substrate-binding protein 1166052 6265163 BAV1088 Bordetella avium 197N ABC transporter substrate-binding protein YP_785611.1 1164838 R 360910 CDS YP_785612.1 187477588 6265164 complement(1166112..1166825) 1 NC_010645.1 ABC transporter ATP-binding protein 1166825 6265164 BAV1089 Bordetella avium 197N ABC transporter ATP-binding protein YP_785612.1 1166112 R 360910 CDS YP_785613.1 187477589 6265165 complement(1166822..1167595) 1 NC_010645.1 ABC transporter ATP-binding protein 1167595 6265165 BAV1090 Bordetella avium 197N ABC transporter ATP-binding protein YP_785613.1 1166822 R 360910 CDS YP_785614.1 187477590 6265166 complement(1167823..1168458) 1 NC_010645.1 endonuclease III 1168458 nth 6265166 nth Bordetella avium 197N endonuclease III YP_785614.1 1167823 R 360910 CDS YP_785615.1 187477591 6267429 complement(1168465..1169106) 1 NC_010645.1 Involved in the electron transport chain; ferredoxin 1169106 6267429 BAV1092 Bordetella avium 197N ferredoxin YP_785615.1 1168465 R 360910 CDS YP_785616.1 187477592 6265167 complement(1169161..1170387) 1 NC_010645.1 poly-beta-hydroxybutyrate (PHB) depolymerase 1170387 phaZ 6265167 phaZ Bordetella avium 197N poly-beta-hydroxybutyrate (PHB) depolymerase YP_785616.1 1169161 R 360910 CDS YP_785617.1 187477593 6267518 complement(1170525..1171316) 1 NC_010645.1 ferredoxin--NADP reductase 1171316 fpr 6267518 fpr Bordetella avium 197N ferredoxin--NADP reductase YP_785617.1 1170525 R 360910 CDS YP_785618.1 187477594 6267030 complement(1171336..1171659) 1 NC_010645.1 ferredoxin 1171659 fdxA 6267030 fdxA Bordetella avium 197N ferredoxin YP_785618.1 1171336 R 360910 CDS YP_785619.1 187477595 6266967 1171786..1172997 1 NC_010645.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1172997 pncB 6266967 pncB Bordetella avium 197N nicotinate phosphoribosyltransferase YP_785619.1 1171786 D 360910 CDS YP_785620.1 187477596 6267548 1173038..1173391 1 NC_010645.1 hypothetical protein 1173391 6267548 BAV1097 Bordetella avium 197N hypothetical protein YP_785620.1 1173038 D 360910 CDS YP_785621.1 187477597 6265168 complement(1173438..1173956) 1 NC_010645.1 flavodoxin 1173956 6265168 BAV1098 Bordetella avium 197N flavodoxin YP_785621.1 1173438 R 360910 CDS YP_785622.1 187477598 6265169 complement(1173953..1174780) 1 NC_010645.1 hypothetical protein 1174780 6265169 BAV1099 Bordetella avium 197N hypothetical protein YP_785622.1 1173953 R 360910 CDS YP_785623.1 187477599 6265170 1174984..1177215 1 NC_010645.1 GTP pyrophosphokinase 1177215 relA 6265170 relA Bordetella avium 197N GTP pyrophosphokinase YP_785623.1 1174984 D 360910 CDS YP_785624.1 187477600 6267636 1177320..1178471 1 NC_010645.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 1178471 argE 6267636 argE Bordetella avium 197N acetylornithine deacetylase YP_785624.1 1177320 D 360910 CDS YP_785625.1 187477601 6266646 <1178608..1179807 1 NC_010645.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1179807 trpB 6266646 trpB Bordetella avium 197N tryptophan synthase subunit beta YP_785625.1 <1178608 D 360910 CDS YP_785626.1 187477602 6267893 1179814..1180668 1 NC_010645.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1180668 trpA 6267893 trpA Bordetella avium 197N tryptophan synthase subunit alpha YP_785626.1 1179814 D 360910 CDS YP_785627.1 187477603 6267892 1180701..1181579 1 NC_010645.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1181579 accD 6267892 accD Bordetella avium 197N acetyl-CoA carboxylase subunit beta YP_785627.1 1180701 D 360910 CDS YP_785628.1 187477604 6266578 1181793..1182338 1 NC_010645.1 outer membrane protein 1182338 6266578 BAV1105 Bordetella avium 197N outer membrane protein YP_785628.1 1181793 D 360910 CDS YP_785629.1 187477605 6265171 complement(1182571..1183185) 1 NC_010645.1 amino acid efflux protein 1183185 6265171 BAV1106 Bordetella avium 197N amino acid efflux protein YP_785629.1 1182571 R 360910 CDS YP_785630.1 187477606 6265172 complement(1183284..1184087) 1 NC_010645.1 AraC family transcriptional regulator 1184087 6265172 BAV1107 Bordetella avium 197N AraC family transcriptional regulator YP_785630.1 1183284 R 360910 CDS YP_785631.1 187477607 6265173 complement(1184285..1187332) 1 NC_010645.1 ribonuclease E 1187332 ams 6265173 ams Bordetella avium 197N ribonuclease E YP_785631.1 1184285 R 360910 CDS YP_785632.1 187477608 6266627 1187853..1188812 1 NC_010645.1 ribosomal large subunit pseudouridine synthase C 1188812 rluC 6266627 rluC Bordetella avium 197N ribosomal large subunit pseudouridine synthase C YP_785632.1 1187853 D 360910 CDS YP_785633.1 187477609 6267665 1188814..1189470 1 NC_010645.1 hydrolase 1189470 6267665 BAV1110 Bordetella avium 197N hydrolase YP_785633.1 1188814 D 360910 CDS YP_785634.1 187477610 6265174 1189575..1190534 1 NC_010645.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 1190534 6265174 BAV1111 Bordetella avium 197N putative sulfite oxidase subunit YedY YP_785634.1 1189575 D 360910 CDS YP_785635.1 187477611 6265175 1190546..1191175 1 NC_010645.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 1191175 6265175 BAV1112 Bordetella avium 197N putative sulfite oxidase subunit YedZ YP_785635.1 1190546 D 360910 CDS YP_785636.1 187477612 6265176 complement(1191150..1191932) 1 NC_010645.1 N-acetylmuramoyl-L-alanine amidase 1191932 6265176 BAV1113 Bordetella avium 197N N-acetylmuramoyl-L-alanine amidase YP_785636.1 1191150 R 360910 CDS YP_785637.1 187477613 6265177 complement(1191936..1192646) 1 NC_010645.1 hypothetical protein 1192646 6265177 BAV1114 Bordetella avium 197N hypothetical protein YP_785637.1 1191936 R 360910 CDS YP_785638.1 187477614 6265178 complement(1192643..1193236) 1 NC_010645.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1193236 6265178 BAV1115 Bordetella avium 197N Maf-like protein YP_785638.1 1192643 R 360910 CDS YP_785639.1 187477615 6265179 1193696..1194358 1 NC_010645.1 hypothetical protein 1194358 6265179 BAV1116 Bordetella avium 197N hypothetical protein YP_785639.1 1193696 D 360910 CDS YP_785640.1 187477616 6265180 1194411..1194593 1 NC_010645.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1194593 rpmF 6265180 rpmF Bordetella avium 197N 50S ribosomal protein L32 YP_785640.1 1194411 D 360910 CDS YP_785641.1 187477617 6267701 <1194642..1195706 1 NC_010645.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1195706 plsX 6267701 plsX Bordetella avium 197N putative glycerol-3-phosphate acyltransferase PlsX YP_785641.1 <1194642 D 360910 CDS YP_785642.1 187477618 6267544 1195706..1196692 1 NC_010645.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 1196692 fabH 6267544 fabH Bordetella avium 197N 3-oxoacyl-(acyl carrier protein) synthase III YP_785642.1 1195706 D 360910 CDS YP_785643.1 187477619 6266948 1196752..1197687 1 NC_010645.1 malonyl CoA-acyl carrier protein transacylase 1197687 fabD 6266948 fabD Bordetella avium 197N malonyl CoA-acyl carrier protein transacylase YP_785643.1 1196752 D 360910 CDS YP_785644.1 187477620 6266944 1197688..1198440 1 NC_010645.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 1198440 fabG 6266944 fabG Bordetella avium 197N 3-ketoacyl-(acyl-carrier-protein) reductase YP_785644.1 1197688 D 360910 CDS YP_785645.1 187477621 6266947 1198657..1198896 1 NC_010645.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1198896 acpP 6266947 acpP Bordetella avium 197N acyl carrier protein YP_785645.1 1198657 D 360910 CDS YP_785646.1 187477622 6266589 <1199071..1200300 1 NC_010645.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1200300 fabF 6266589 fabF Bordetella avium 197N 3-oxoacyl-(acyl carrier protein) synthase II YP_785646.1 <1199071 D 360910 CDS YP_785647.1 187477623 6266946 1200297..1200734 1 NC_010645.1 hypothetical protein 1200734 6266946 BAV1124 Bordetella avium 197N hypothetical protein YP_785647.1 1200297 D 360910 CDS YP_785648.1 187477624 6265181 1200731..1201330 1 NC_010645.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1201330 rpoE 6265181 rpoE Bordetella avium 197N RNA polymerase sigma factor RpoE YP_785648.1 1200731 D 360910 CDS YP_785649.1 187477625 6267708 1201343..1201828 1 NC_010645.1 sigma-E factor negative regulatory protein 1201828 rseA 6267708 rseA Bordetella avium 197N sigma-E factor negative regulatory protein YP_785649.1 1201343 D 360910 CDS YP_785650.1 187477626 6267729 1201828..1202853 1 NC_010645.1 sigma-E factor regulatory protein 1202853 rseB 6267729 rseB Bordetella avium 197N sigma-E factor regulatory protein YP_785650.1 1201828 D 360910 CDS YP_785651.1 187477627 6267730 1202899..1204395 1 NC_010645.1 serine protease 1204395 mucD 6267730 mucD Bordetella avium 197N serine protease YP_785651.1 1202899 D 360910 CDS YP_785652.1 187477628 6267397 1204598..1206391 1 NC_010645.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1206391 lepA 6267397 lepA Bordetella avium 197N GTP-binding protein LepA YP_785652.1 1204598 D 360910 CDS YP_785653.1 187477629 6267284 1206412..1207296 1 NC_010645.1 signal peptidase I 1207296 lepB 6267284 lepB Bordetella avium 197N signal peptidase I YP_785653.1 1206412 D 360910 CDS YP_785654.1 187477630 6267285 1207302..1208057 1 NC_010645.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1208057 rnc 6267285 rnc Bordetella avium 197N ribonuclease III YP_785654.1 1207302 D 360910 CDS YP_785655.1 187477631 6267668 1208054..1208944 1 NC_010645.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1208944 era 6267668 era Bordetella avium 197N GTP-binding protein Era YP_785655.1 1208054 D 360910 CDS YP_785656.1 187477632 6266931 1208937..1209524 1 NC_010645.1 DNA repair protein 1209524 recO 6266931 recO Bordetella avium 197N DNA repair protein YP_785656.1 1208937 D 360910 CDS YP_785657.1 187477633 6267630 complement(1209848..1210558) 1 NC_010645.1 membrane protein 1210558 6267630 BAV1134 Bordetella avium 197N membrane protein YP_785657.1 1209848 R 360910 CDS YP_785658.1 187477634 6265182 complement(1210659..1210895) 1 NC_010645.1 hypothetical protein 1210895 6265182 BAV1135 Bordetella avium 197N hypothetical protein YP_785658.1 1210659 R 360910 CDS YP_785659.1 187477635 6265183 complement(1210919..1211356) 1 NC_010645.1 DNA polymerase III subunit chi 1211356 holC 6265183 holC Bordetella avium 197N DNA polymerase III subunit chi YP_785659.1 1210919 R 360910 CDS YP_785660.1 187477636 6267191 complement(1211373..1212887) 1 NC_010645.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1212887 pepA 6267191 pepA Bordetella avium 197N leucyl aminopeptidase YP_785660.1 1211373 R 360910 CDS YP_785661.1 187477637 6267499 1212942..1214060 1 NC_010645.1 permease 1214060 6267499 BAV1138 Bordetella avium 197N permease YP_785661.1 1212942 D 360910 CDS YP_785662.1 187477638 6265184 complement(1214067..1214990) 1 NC_010645.1 LysR family transcriptional regulator 1214990 6265184 BAV1139 Bordetella avium 197N LysR family transcriptional regulator YP_785662.1 1214067 R 360910 CDS YP_785663.1 187477639 6265185 1215141..1216349 1 NC_010645.1 hypothetical protein 1216349 6265185 BAV1140 Bordetella avium 197N hypothetical protein YP_785663.1 1215141 D 360910 CDS YP_785664.1 187477640 6265186 1216407..1217900 1 NC_010645.1 methylmalonate-semialdehyde dehydrogenase 1217900 6265186 BAV1141 Bordetella avium 197N methylmalonate-semialdehyde dehydrogenase YP_785664.1 1216407 D 360910 CDS YP_785665.1 187477641 6265187 1218382..1219326 1 NC_010645.1 transcriptional regulator CysB-like protein 1219326 6265187 BAV1143 Bordetella avium 197N transcriptional regulator CysB-like protein YP_785665.1 1218382 D 360910 CDS YP_785666.1 187477642 6265188 1219577..1219912 1 NC_010645.1 hypothetical protein 1219912 6265188 BAV1144 Bordetella avium 197N hypothetical protein YP_785666.1 1219577 D 360910 CDS YP_785667.1 187477643 6265189 complement(1220112..1220768) 1 NC_010645.1 lipoprotein 1220768 6265189 BAV1145 Bordetella avium 197N lipoprotein YP_785667.1 1220112 R 360910 CDS YP_785668.1 187477644 6265190 1221038..1222927 1 NC_010645.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 1222927 prpE 6265190 prpE Bordetella avium 197N propionyl-CoA synthetase YP_785668.1 1221038 D 360910 CDS YP_785669.1 187477645 6267583 1222924..1223331 1 NC_010645.1 hypothetical protein 1223331 6267583 BAV1147 Bordetella avium 197N hypothetical protein YP_785669.1 1222924 D 360910 CDS YP_785670.1 187477646 6265191 <1223334..1224629 1 NC_010645.1 transporter 1224629 6265191 BAV1148 Bordetella avium 197N transporter YP_785670.1 <1223334 D 360910 CDS YP_785671.1 187477647 6265192 1224769..1226748 1 NC_010645.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 1226748 acs 6265192 acs Bordetella avium 197N acetyl-CoA synthetase YP_785671.1 1224769 D 360910 CDS YP_785672.1 187477648 6266593 1227117..1228130 1 NC_010645.1 low-specificity L-threonine aldolase 1228130 ltaE 6266593 ltaE Bordetella avium 197N low-specificity L-threonine aldolase YP_785672.1 1227117 D 360910 CDS YP_785673.1 187477649 6267316 complement(1228197..1229030) 1 NC_010645.1 hypothetical protein 1229030 6267316 BAV1151 Bordetella avium 197N hypothetical protein YP_785673.1 1228197 R 360910 CDS YP_785674.1 187477650 6265193 complement(1229163..1230791) 1 NC_010645.1 electron transfer flavoprotein-ubiquinone oxidoreductase 1230791 etf 6265193 etf Bordetella avium 197N electron transfer flavoprotein-ubiquinone oxidoreductase YP_785674.1 1229163 R 360910 CDS YP_785675.1 187477651 6266933 1230945..1231397 1 NC_010645.1 thioesterase 1231397 6266933 BAV1153 Bordetella avium 197N thioesterase YP_785675.1 1230945 D 360910 CDS YP_785676.1 187477652 6265194 1231506..1232204 1 NC_010645.1 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A 1232204 lpsI 6265194 lpsI Bordetella avium 197N succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A YP_785676.1 1231506 D 360910 CDS YP_785677.1 187477653 6267309 1232217..1232870 1 NC_010645.1 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B 1232870 lpsJ 6267309 lpsJ Bordetella avium 197N succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B YP_785677.1 1232217 D 360910 CDS YP_785678.1 187477654 6267310 1233066..1233950 1 NC_010645.1 RpiR family transcriptional regulator 1233950 6267310 BAV1156 Bordetella avium 197N RpiR family transcriptional regulator YP_785678.1 1233066 D 360910 CDS YP_785679.1 187477655 6265195 1233947..1234927 1 NC_010645.1 L-asparaginase 1234927 6265195 BAV1157 Bordetella avium 197N L-asparaginase YP_785679.1 1233947 D 360910 CDS YP_785680.1 187477656 6265196 1234965..1236848 1 NC_010645.1 ABC transporter ATP-binding protein 1236848 6265196 BAV1158 Bordetella avium 197N ABC transporter ATP-binding protein YP_785680.1 1234965 D 360910 CDS YP_785681.1 187477657 6265197 1236926..1238479 1 NC_010645.1 ABC transporter substrate-binding protein 1238479 6265197 BAV1159 Bordetella avium 197N ABC transporter substrate-binding protein YP_785681.1 1236926 D 360910 CDS YP_785682.1 187477658 6265198 1238530..1239450 1 NC_010645.1 ABC transporter permease 1239450 6265198 BAV1160 Bordetella avium 197N ABC transporter permease YP_785682.1 1238530 D 360910 CDS YP_785683.1 187477659 6265199 1239458..1240351 1 NC_010645.1 ABC transporter permease 1240351 6265199 BAV1161 Bordetella avium 197N ABC transporter permease YP_785683.1 1239458 D 360910 CDS YP_785684.1 187477660 6265200 <1240394..1241512 1 NC_010645.1 D-aminopeptidase 1241512 dmpA 6265200 dmpA Bordetella avium 197N D-aminopeptidase YP_785684.1 <1240394 D 360910 CDS YP_785685.1 187477661 6266886 1241525..1242343 1 NC_010645.1 D-aminopeptidase 1242343 dppA 6266886 dppA Bordetella avium 197N D-aminopeptidase YP_785685.1 1241525 D 360910 CDS YP_785686.1 187477662 6266900 1242358..1244154 1 NC_010645.1 aminopeptidase P 1244154 6266900 BAV1164 Bordetella avium 197N aminopeptidase P YP_785686.1 1242358 D 360910 CDS YP_785687.1 187477663 6265201 1244377..1246029 1 NC_010645.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1246029 pyrG 6265201 pyrG Bordetella avium 197N CTP synthetase YP_785687.1 1244377 D 360910 CDS YP_785688.1 187477664 6267614 1246216..1247502 1 NC_010645.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1247502 eno 6267614 eno Bordetella avium 197N phosphopyruvate hydratase YP_785688.1 1246216 D 360910 CDS YP_785689.1 187477665 6266926 1247576..1247944 1 NC_010645.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 1247944 ftsB 6266926 ftsB Bordetella avium 197N cell division protein FtsB YP_785689.1 1247576 D 360910 CDS YP_785690.1 187477666 6267033 complement(1247968..1248621) 1 NC_010645.1 seems to be unique to the bordetellae. to other organisms.; hypothetical protein 1248621 6267033 BAV1168 Bordetella avium 197N hypothetical protein YP_785690.1 1247968 R 360910 CDS YP_785691.1 187477667 6265202 complement(1248681..1249601) 1 NC_010645.1 chaperonin 1249601 hslO 6265202 hslO Bordetella avium 197N chaperonin YP_785691.1 1248681 R 360910 CDS YP_785692.1 187477668 6267212 complement(1249640..1250161) 1 NC_010645.1 transferase 1250161 6267212 BAV1170 Bordetella avium 197N transferase YP_785692.1 1249640 R 360910 CDS YP_785693.1 187477669 6265203 complement(1250167..1251831) 1 NC_010645.1 acetyl-CoA synthetase 1251831 6265203 BAV1171 Bordetella avium 197N acetyl-CoA synthetase YP_785693.1 1250167 R 360910 CDS YP_785694.1 187477670 6265204 complement(1251993..1252478) 1 NC_010645.1 membrane protein 1252478 6265204 BAV1172 Bordetella avium 197N membrane protein YP_785694.1 1251993 R 360910 CDS YP_785695.1 187477671 6265205 complement(1252818..1253618) 1 NC_010645.1 AraC family transcriptional regulator 1253618 6265205 BAV1173 Bordetella avium 197N AraC family transcriptional regulator YP_785695.1 1252818 R 360910 CDS YP_785696.1 187477672 6265206 1253896..1255572 1 NC_010645.1 Also similar to BAV3351 (55.3 38d.).; 2-isopropylmalate synthase 1255572 leuA1 6265206 leuA1 Bordetella avium 197N 2-isopropylmalate synthase YP_785696.1 1253896 D 360910 CDS YP_785697.1 187477673 6267286 complement(1255967..1256158) 1 NC_010645.1 Seems to be unique to the bordetellae. to other proteins in the database; hypothetical protein 1256158 6267286 BAV1175 Bordetella avium 197N hypothetical protein YP_785697.1 1255967 R 360910 CDS YP_785698.1 187477674 6265207 complement(1256384..1257991) 1 NC_010645.1 methylase 1257991 6265207 BAV1176 Bordetella avium 197N methylase YP_785698.1 1256384 R 360910 CDS YP_785699.1 187477675 6265208 complement(1258013..1258441) 1 NC_010645.1 membrane protein 1258441 6265208 BAV1177 Bordetella avium 197N membrane protein YP_785699.1 1258013 R 360910 CDS YP_785700.1 187477676 6265209 complement(1258569..1259771) 1 NC_010645.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 1259771 prpC 6265209 prpC Bordetella avium 197N methylcitrate synthase YP_785700.1 1258569 R 360910 CDS YP_785701.1 187477677 6267582 complement(1259840..1260733) 1 NC_010645.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 1260733 prpB 6267582 prpB Bordetella avium 197N 2-methylisocitrate lyase YP_785701.1 1259840 R 360910 CDS YP_785702.1 187477678 6267581 complement(1260924..1261913) 1 NC_010645.1 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 1261913 mdh 6267581 mdh Bordetella avium 197N malate dehydrogenase YP_785702.1 1260924 R 360910 CDS YP_785703.1 187477679 6267331 1262231..1263010 1 NC_010645.1 GntR family transcriptional regulator 1263010 6267331 BAV1181 Bordetella avium 197N GntR family transcriptional regulator YP_785703.1 1262231 D 360910 CDS YP_785704.1 187477680 6265210 1263131..1263544 1 NC_010645.1 succinate dehydrogenase cytochrome b-556 subunit 1263544 sdhC 6265210 sdhC Bordetella avium 197N succinate dehydrogenase cytochrome b-556 subunit YP_785704.1 1263131 D 360910 CDS YP_785705.1 187477681 6267743 1263544..1263927 1 NC_010645.1 succinate dehydrogenase hydrophobic membrane anchor subunit 1263927 sdhD 6267743 sdhD Bordetella avium 197N succinate dehydrogenase hydrophobic membrane anchor subunit YP_785705.1 1263544 D 360910 CDS YP_785706.1 187477682 6267744 <1263931..1265709 1 NC_010645.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1265709 sdhA 6267744 sdhA Bordetella avium 197N succinate dehydrogenase flavoprotein subunit YP_785706.1 <1263931 D 360910 CDS YP_785707.1 187477683 6267741 1265723..1266439 1 NC_010645.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1266439 sdhB 6267741 sdhB Bordetella avium 197N succinate dehydrogenase iron-sulfur subunit YP_785707.1 1265723 D 360910 CDS YP_785708.1 187477684 6267742 1266465..1266725 1 NC_010645.1 hypothetical protein 1266725 6267742 BAV1186 Bordetella avium 197N hypothetical protein YP_785708.1 1266465 D 360910 CDS YP_785709.1 187477685 6265211 1266746..1268047 1 NC_010645.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 1268047 gltA 6265211 gltA Bordetella avium 197N type II citrate synthase YP_785709.1 1266746 D 360910 CDS YP_785710.1 187477686 6267097 complement(1268652..1270193) 1 NC_010645.1 signaling protein 1270193 6267097 BAV1188 Bordetella avium 197N signaling protein YP_785710.1 1268652 R 360910 CDS YP_785711.1 187477687 6265212 complement(1270958..>1271806) 1 NC_010645.1 LysR family transcriptional regulator >1271806 6265212 BAV1189 Bordetella avium 197N LysR family transcriptional regulator YP_785711.1 1270958 R 360910 CDS YP_785712.1 187477688 6265213 1272020..1273096 1 NC_010645.1 ABC transporter ATP-binding protein 1273096 6265213 BAV1190 Bordetella avium 197N ABC transporter ATP-binding protein YP_785712.1 1272020 D 360910 CDS YP_785713.1 187477689 6265214 1273107..1274831 1 NC_010645.1 ABC transporter permease 1274831 6265214 BAV1191 Bordetella avium 197N ABC transporter permease YP_785713.1 1273107 D 360910 CDS YP_785714.1 187477690 6265215 1274837..1275679 1 NC_010645.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 1275679 phnX 6265215 phnX Bordetella avium 197N phosphonoacetaldehyde hydrolase YP_785714.1 1274837 D 360910 CDS YP_785715.1 187477691 6267528 1275733..1276761 1 NC_010645.1 ABC transporter periplasmic binding protein 1276761 6267528 BAV1193 Bordetella avium 197N ABC transporter periplasmic binding protein YP_785715.1 1275733 D 360910 CDS YP_785716.1 187477692 6265216 1276835..1277962 1 NC_010645.1 oxidoreductase 1277962 6265216 BAV1194 Bordetella avium 197N oxidoreductase YP_785716.1 1276835 D 360910 CDS YP_785717.1 187477693 6265217 complement(1278011..1278463) 1 NC_010645.1 membrane protein 1278463 6265217 BAV1195 Bordetella avium 197N membrane protein YP_785717.1 1278011 R 360910 CDS YP_785718.1 187477694 6265218 complement(1278563..1279246) 1 NC_010645.1 iron-uptake factor 1279246 piuC 6265218 piuC Bordetella avium 197N iron-uptake factor YP_785718.1 1278563 R 360910 CDS YP_785719.1 187477695 6267541 complement(1279248..1281443) 1 NC_010645.1 hydroxamate-type ferrisiderophore receptor 1281443 piuA 6267541 piuA Bordetella avium 197N hydroxamate-type ferrisiderophore receptor YP_785719.1 1279248 R 360910 CDS YP_785720.1 187477696 6267540 complement(join(1281629..1281751,1281754..>1281942)) 1 NC_010645.1 Similar to C-terminal regions of several CDSs; hypothetical protein 1281751 6267540 BAV1198 Bordetella avium 197N hypothetical protein YP_785720.1 1281629 R 360910 CDS YP_785721.1 187477697 6265219 <1282029..1282238 1 NC_010645.1 ; Partial CDS. Similar to the C-terminal regions of severals including bordetellae transcriptional regulators; hypothetical protein 1282238 6265219 BAV1199 Bordetella avium 197N hypothetical protein YP_785721.1 <1282029 D 360910 CDS YP_785722.1 187477698 6265220 complement(1282331..1284613) 1 NC_010645.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 1284613 maeB 6265220 maeB Bordetella avium 197N malic enzyme YP_785722.1 1282331 R 360910 CDS YP_785723.1 187477699 6267323 complement(1284769..1287426) 1 NC_010645.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 1287426 aceE 6267323 aceE Bordetella avium 197N 2-oxoacid dehydrogenase subunit E1 YP_785723.1 1284769 R 360910 CDS YP_785724.1 187477700 6266579 1287652..1289685 1 NC_010645.1 oligopeptide transporter 1289685 6266579 BAV1202 Bordetella avium 197N oligopeptide transporter YP_785724.1 1287652 D 360910 CDS YP_785725.1 187477701 6265221 1290054..1292924 1 NC_010645.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1292924 sucA 6265221 sucA Bordetella avium 197N 2-oxoglutarate dehydrogenase E1 component YP_785725.1 1290054 D 360910 CDS YP_785726.1 187477702 6267451 1292971..1294170 1 NC_010645.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 1294170 odhB 6267451 odhB Bordetella avium 197N dihydrolipoamide succinyltransferase YP_785726.1 1292971 D 360910 CDS YP_785727.1 187477703 6267452 1294238..1295662 1 NC_010645.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1295662 odhL 6267452 odhL Bordetella avium 197N dihydrolipoamide dehydrogenase YP_785727.1 1294238 D 360910 CDS YP_785728.1 187477704 6267453 1295740..1296831 1 NC_010645.1 ATPase 1296831 6267453 BAV1206 Bordetella avium 197N ATPase YP_785728.1 1295740 D 360910 CDS YP_785729.1 187477705 6265222 <1296959..1297468 1 NC_010645.1 RNA polymerase ECF family sigma factor 1297468 fecI 6265222 fecI Bordetella avium 197N RNA polymerase ECF family sigma factor YP_785729.1 <1296959 D 360910 CDS YP_785730.1 187477706 6266969 1297461..1298372 1 NC_010645.1 transmembrane sensor protein 1298372 fecR 6266969 fecR Bordetella avium 197N transmembrane sensor protein YP_785730.1 1297461 D 360910 CDS YP_785731.1 187477707 6266971 <1298485..1300950 1 NC_010645.1 TonB-dependent siderophore receptor 1300950 bfrH 6266971 bfrH Bordetella avium 197N TonB-dependent siderophore receptor YP_785731.1 <1298485 D 360910 CDS YP_785732.1 187477708 6266707 <1301047..1301343 1 NC_010645.1 membrane protein 1301343 6266707 BAV1210 Bordetella avium 197N membrane protein YP_785732.1 <1301047 D 360910 CDS YP_785733.1 187477709 6265223 1301340..1302959 1 NC_010645.1 membrane protein 1302959 6265223 BAV1211 Bordetella avium 197N membrane protein YP_785733.1 1301340 D 360910 CDS YP_785734.1 187477710 6265224 1302956..1303285 1 NC_010645.1 membrane protein 1303285 6265224 BAV1212 Bordetella avium 197N membrane protein YP_785734.1 1302956 D 360910 CDS YP_785735.1 187477711 6265225 1303359..1304681 1 NC_010645.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1304681 trpS 6265225 trpS Bordetella avium 197N tryptophanyl-tRNA synthetase YP_785735.1 1303359 D 360910 CDS YP_785736.1 187477712 6267898 complement(1304799..1306850) 1 NC_010645.1 ATP-dependent helicase 1306850 6267898 BAV1214 Bordetella avium 197N ATP-dependent helicase YP_785736.1 1304799 R 360910 CDS YP_785737.1 187477713 6265226 1307017..1309389 1 NC_010645.1 transcription accessory protein 1309389 tex 6265226 tex Bordetella avium 197N transcription accessory protein YP_785737.1 1307017 D 360910 CDS YP_785738.1 187477714 6267796 complement(1309565..>1310164) 1 NC_010645.1 ADP-ribosyltransferase toxin (partial) >1310164 6267796 BAV1216 Bordetella avium 197N ADP-ribosyltransferase toxin (partial) YP_785738.1 1309565 R 360910 CDS YP_785739.1 187477715 6265227 complement(join(1310234..1311274,1311277..1311906)) 1 NC_010645.1 Partial CDS. Similar to Fha-family adhesins of B. bronchiseptica; adhesin (partial) 1311906 6265227 BAV1217 Bordetella avium 197N adhesin (partial) YP_785739.1 1310234 R 360910 CDS YP_785740.1 187477716 6265228 complement(1312222..>1313070) 1 NC_010645.1 lipoprotein >1313070 6265228 BAV1218 Bordetella avium 197N lipoprotein YP_785740.1 1312222 R 360910 CDS YP_785741.1 187477717 6265229 1313123..1314085 1 NC_010645.1 ribosomal large subunit pseudouridine synthase D 1314085 rluD 6265229 rluD Bordetella avium 197N ribosomal large subunit pseudouridine synthase D YP_785741.1 1313123 D 360910 CDS YP_785742.1 187477718 6267666 1314073..1314834 1 NC_010645.1 hypothetical protein 1314834 6267666 BAV1220 Bordetella avium 197N hypothetical protein YP_785742.1 1314073 D 360910 CDS YP_785743.1 187477719 6265230 <1314973..1316598 1 NC_010645.1 poly-beta-hydroxybutyrate polymerase 1316598 phbC 6265230 phbC Bordetella avium 197N poly-beta-hydroxybutyrate polymerase YP_785743.1 <1314973 D 360910 CDS YP_785744.1 187477720 6267521 1316655..1317392 1 NC_010645.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 1317392 fabG 6267521 fabG Bordetella avium 197N 3-ketoacyl-(acyl-carrier-protein) reductase YP_785744.1 1316655 D 360910 CDS YP_785745.1 187477721 6267519 1317483..1318046 1 NC_010645.1 regulator of poly-beta-hydroxybutyrate (PHB) biosynthesis 1318046 phbF 6267519 phbF Bordetella avium 197N regulator of poly-beta-hydroxybutyrate (PHB) biosynthesis YP_785745.1 1317483 D 360910 CDS YP_785746.1 187477722 6267522 1318216..1318755 1 NC_010645.1 hypothetical protein 1318755 6267522 BAV1224 Bordetella avium 197N hypothetical protein YP_785746.1 1318216 D 360910 CDS YP_785747.1 187477723 6265231 1318758..1319090 1 NC_010645.1 hypothetical protein 1319090 6265231 BAV1225 Bordetella avium 197N hypothetical protein YP_785747.1 1318758 D 360910 CDS YP_785748.1 187477724 6265232 1319101..1319937 1 NC_010645.1 permease 1319937 6265232 BAV1226 Bordetella avium 197N permease YP_785748.1 1319101 D 360910 CDS YP_785749.1 187477725 6265233 1319963..1321324 1 NC_010645.1 membrane protein 1321324 6265233 BAV1227 Bordetella avium 197N membrane protein YP_785749.1 1319963 D 360910 CDS YP_785750.1 187477726 6265234 1321399..1322274 1 NC_010645.1 hypothetical protein 1322274 6265234 BAV1228 Bordetella avium 197N hypothetical protein YP_785750.1 1321399 D 360910 CDS YP_785751.1 187477727 6265235 complement(1322366..1322698) 1 NC_010645.1 hypothetical protein 1322698 6265235 BAV1229 Bordetella avium 197N hypothetical protein YP_785751.1 1322366 R 360910 CDS YP_785752.1 187477728 6265236 complement(1322765..1322929) 1 NC_010645.1 hypothetical protein 1322929 6265236 BAV1230 Bordetella avium 197N hypothetical protein YP_785752.1 1322765 R 360910 CDS YP_785753.1 187477729 6265237 complement(1322960..1323160) 1 NC_010645.1 hypothetical protein 1323160 6265237 BAV1231 Bordetella avium 197N hypothetical protein YP_785753.1 1322960 R 360910 CDS YP_785754.1 187477730 6265238 complement(1323967..1326540) 1 NC_010645.1 catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 1326540 cphA1 6265238 cphA1 Bordetella avium 197N cyanophycin synthetase YP_785754.1 1323967 R 360910 CDS YP_785755.1 187477731 6266807 complement(1326609..1329221) 1 NC_010645.1 catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 1329221 cphA2 6266807 cphA2 Bordetella avium 197N cyanophycin synthetase YP_785755.1 1326609 R 360910 CDS YP_785756.1 187477732 6266808 1329478..1331760 1 NC_010645.1 ABC transporter permease and ATP-binding protein 1331760 6266808 BAV1234 Bordetella avium 197N ABC transporter permease and ATP-binding protein YP_785756.1 1329478 D 360910 CDS YP_785757.1 187477733 6265239 1331765..1332229 1 NC_010645.1 hypothetical protein 1332229 6265239 BAV1235 Bordetella avium 197N hypothetical protein YP_785757.1 1331765 D 360910 CDS YP_785758.1 187477734 6265240 complement(1332235..1333365) 1 NC_010645.1 hypothetical protein 1333365 6265240 BAV1236 Bordetella avium 197N hypothetical protein YP_785758.1 1332235 R 360910 CDS YP_785759.1 187477735 6265241 <1333477..1334208 1 NC_010645.1 hypothetical protein 1334208 6265241 BAV1237 Bordetella avium 197N hypothetical protein YP_785759.1 <1333477 D 360910 CDS YP_785760.1 187477736 6265242 1334233..1335450 1 NC_010645.1 lytic murein transglycosylase 1335450 6265242 BAV1238 Bordetella avium 197N lytic murein transglycosylase YP_785760.1 1334233 D 360910 CDS YP_785761.1 187477737 6265243 1335782..1337347 1 NC_010645.1 signaling protein 1337347 6265243 BAV1239 Bordetella avium 197N signaling protein YP_785761.1 1335782 D 360910 CDS YP_785762.1 187477738 6265244 complement(1337355..1337672) 1 NC_010645.1 hypothetical protein 1337672 6265244 BAV1240 Bordetella avium 197N hypothetical protein YP_785762.1 1337355 R 360910 CDS YP_785763.1 187477739 6265245 1337795..1338319 1 NC_010645.1 membrane protein 1338319 6265245 BAV1241 Bordetella avium 197N membrane protein YP_785763.1 1337795 D 360910 CDS YP_785764.1 187477740 6265246 1338424..1338846 1 NC_010645.1 hypothetical protein 1338846 6265246 BAV1242 Bordetella avium 197N hypothetical protein YP_785764.1 1338424 D 360910 CDS YP_785765.1 187477741 6265247 complement(1338843..1339898) 1 NC_010645.1 dTDP-glucose 4,6-dehydratase 1339898 rfbB 6265247 rfbB Bordetella avium 197N dTDP-glucose 4,6-dehydratase YP_785765.1 1338843 R 360910 CDS YP_785766.1 187477742 6267643 complement(1340052..1340930) 1 NC_010645.1 glucose-1-phosphate thymidylyltransferase 1 1340930 rfbA 6267643 rfbA Bordetella avium 197N glucose-1-phosphate thymidylyltransferase 1 YP_785766.1 1340052 R 360910 CDS YP_785767.1 187477743 6267642 complement(1341050..1341427) 1 NC_010645.1 hypothetical protein 1341427 6267642 BAV1245 Bordetella avium 197N hypothetical protein YP_785767.1 1341050 R 360910 CDS YP_785768.1 187477744 6265248 complement(1341475..1342446) 1 NC_010645.1 glycosyl transferase 1342446 6265248 BAV1246 Bordetella avium 197N glycosyl transferase YP_785768.1 1341475 R 360910 CDS YP_785769.1 187477745 6265249 complement(1342443..1342844) 1 NC_010645.1 O antigen biosynthesis protein 1342844 6265249 BAV1247 Bordetella avium 197N O antigen biosynthesis protein YP_785769.1 1342443 R 360910 CDS YP_785770.1 187477746 6265250 complement(1342844..1343755) 1 NC_010645.1 transketolase C-terminal part 1343755 6265250 BAV1248 Bordetella avium 197N transketolase C-terminal part YP_785770.1 1342844 R 360910 CDS YP_785771.1 187477747 6265251 complement(1343755..1344567) 1 NC_010645.1 transketolase N-terminal part 1344567 6265251 BAV1249 Bordetella avium 197N transketolase N-terminal part YP_785771.1 1343755 R 360910 CDS YP_785772.1 187477748 6265252 complement(1344564..>1345631) 1 NC_010645.1 sugar epimerase/dehydratase >1345631 6265252 BAV1250 Bordetella avium 197N sugar epimerase/dehydratase YP_785772.1 1344564 R 360910 CDS YP_785773.1 187477749 6265253 complement(1345633..>1346520) 1 NC_010645.1 O antigen biosynthesis protein >1346520 6265253 BAV1251 Bordetella avium 197N O antigen biosynthesis protein YP_785773.1 1345633 R 360910 CDS YP_785774.1 187477750 6265254 complement(1346513..1347466) 1 NC_010645.1 O antigen biosynthesis sulfotransferase 1347466 6265254 BAV1252 Bordetella avium 197N O antigen biosynthesis sulfotransferase YP_785774.1 1346513 R 360910 CDS YP_785775.1 187477751 6265255 complement(1347469..1347657) 1 NC_010645.1 hypothetical protein 1347657 6265255 BAV1253 Bordetella avium 197N hypothetical protein YP_785775.1 1347469 R 360910 CDS YP_785776.1 187477752 6265256 complement(1347809..1348894) 1 NC_010645.1 CDP-glucose 4,6-dehydratase 1348894 rfbG 6265256 rfbG Bordetella avium 197N CDP-glucose 4,6-dehydratase YP_785776.1 1347809 R 360910 CDS YP_785777.1 187477753 6267647 complement(1348881..1349666) 1 NC_010645.1 glucose-1-phosphate cytidylyltransferase 1349666 rfbF 6267647 rfbF Bordetella avium 197N glucose-1-phosphate cytidylyltransferase YP_785777.1 1348881 R 360910 CDS YP_785778.1 187477754 6267646 complement(1349670..1351505) 1 NC_010645.1 membrane protein 1351505 6267646 BAV1256 Bordetella avium 197N membrane protein YP_785778.1 1349670 R 360910 CDS YP_785779.1 187477755 6265258 complement(join(1354289..1354546,1354549..>1354740)) 1 NC_010645.1 transposase (partial) 1354546 6265258 BAV1258 Bordetella avium 197N transposase (partial) YP_785779.1 1354289 R 360910 CDS YP_785780.1 187477756 6265259 complement(1355199..1356017) 1 NC_010645.1 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 1356017 hpaI 6265259 hpaI Bordetella avium 197N 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_785780.1 1355199 R 360910 CDS YP_785781.1 187477757 6267202 complement(1356049..1356852) 1 NC_010645.1 2-oxo-hept-3-ene-1,7-dioate hydratase 1356852 hpaH 6267202 hpaH Bordetella avium 197N 2-oxo-hept-3-ene-1,7-dioate hydratase YP_785781.1 1356049 R 360910 CDS YP_785782.1 187477758 6267200 complement(1356862..1357269) 1 NC_010645.1 5-carboxymethyl-2-hydroxymuconate delta-isomerase 1357269 hpaF 6267200 hpaF Bordetella avium 197N 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_785782.1 1356862 R 360910 CDS YP_785783.1 187477759 6267196 complement(1357269..1358069) 1 NC_010645.1 Similar to the C-terminal half of Escherichia coli 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase [includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase hpaG SWALL:HPAG_ECOLI (SWALL:Q46978) (429 aa) fasta scores: E(): 1.6e-44, 58.85 38d in 209 aa; 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase 1358069 hpaG' 6267196 hpaG' Bordetella avium 197N 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase YP_785783.1 1357269 R 360910 CDS YP_785784.1 187477760 6267198 complement(1358066..>1358872) 1 NC_010645.1 ; Similar to the N-terminal half of Escherichia coli 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase [includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase HpaG SWALL:HPAG_ECOLI (SWALL:Q46978) (429 aa) fasta scores: E(): 1.5e-22, 36.71 38d in 207 aa; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase >1358872 hpaG 6267198 hpaG Bordetella avium 197N 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase YP_785784.1 1358066 R 360910 CDS YP_785785.1 187477761 6267197 complement(1358923..1360389) 1 NC_010645.1 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase 1360389 hpaE 6267197 hpaE Bordetella avium 197N 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase YP_785785.1 1358923 R 360910 CDS YP_785786.1 187477762 6267195 complement(1360413..1360799) 1 NC_010645.1 Also similar to BAV1268, BAV1921, BAV0553, BAV1913,BAV3018 and BAV1097; endoribonuclease 1360799 6267195 BAV1267 Bordetella avium 197N endoribonuclease YP_785786.1 1360413 R 360910 CDS YP_785787.1 187477763 6265260 complement(1360796..1361197) 1 NC_010645.1 Also similar to BAV1267, BAV1921, BAV0553, BAV1913,BAV3018 and BAV1097; endoribonuclease 1361197 6265260 BAV1268 Bordetella avium 197N endoribonuclease YP_785787.1 1360796 R 360910 CDS YP_785788.1 187477764 6265261 complement(1361237..1362241) 1 NC_010645.1 catechol 2,3-dioxygenase 1362241 6265261 BAV1269 Bordetella avium 197N catechol 2,3-dioxygenase YP_785788.1 1361237 R 360910 CDS YP_785789.1 187477765 6265262 complement(1362384..1363823) 1 NC_010645.1 amidase 1363823 6265262 BAV1270 Bordetella avium 197N amidase YP_785789.1 1362384 R 360910 CDS YP_785790.1 187477766 6265263 complement(1363820..1364545) 1 NC_010645.1 ABC transporter ATP-binding protein 1364545 6265263 BAV1271 Bordetella avium 197N ABC transporter ATP-binding protein YP_785790.1 1363820 R 360910 CDS YP_785791.1 187477767 6265264 complement(1364542..1366335) 1 NC_010645.1 ABC transporter ATP binding/permease 1366335 6265264 BAV1272 Bordetella avium 197N ABC transporter ATP binding/permease YP_785791.1 1364542 R 360910 CDS YP_785792.1 187477768 6265265 complement(1366325..>1367362) 1 NC_010645.1 ABC transporter permease >1367362 6265265 BAV1273 Bordetella avium 197N ABC transporter permease YP_785792.1 1366325 R 360910 CDS YP_785793.1 187477769 6265266 complement(1367359..>1368540) 1 NC_010645.1 ABC transporter substrate-binding protein >1368540 6265266 BAV1274 Bordetella avium 197N ABC transporter substrate-binding protein YP_785793.1 1367359 R 360910 CDS YP_785794.1 187477770 6265267 complement(1368740..1369075) 1 NC_010645.1 hypothetical protein 1369075 6265267 BAV1275 Bordetella avium 197N hypothetical protein YP_785794.1 1368740 R 360910 CDS YP_785795.1 187477771 6265268 complement(1369273..>1369932) 1 NC_010645.1 Crp family transcriptional regulator >1369932 6265268 BAV1276 Bordetella avium 197N Crp family transcriptional regulator YP_785795.1 1369273 R 360910 CDS YP_785796.1 187477772 6265269 1370302..1370736 1 NC_010645.1 transposase (partial) 1370736 6265269 BAV1277 Bordetella avium 197N transposase (partial) YP_785796.1 1370302 D 360910 CDS YP_785797.1 187477773 6265270 1370729..1370920 1 NC_010645.1 hypothetical protein 1370920 6265270 BAV1277A Bordetella avium 197N hypothetical protein YP_785797.1 1370729 D 360910 CDS YP_785798.1 187477774 6265271 complement(1370910..1371179) 1 NC_010645.1 phage glycoprotein 1371179 6265271 BAV1278 Bordetella avium 197N phage glycoprotein YP_785798.1 1370910 R 360910 CDS YP_785799.1 187477775 6265272 complement(1371209..1371352) 1 NC_010645.1 hypothetical protein 1371352 6265272 BAV1279 Bordetella avium 197N hypothetical protein YP_785799.1 1371209 R 360910 CDS YP_785800.1 187477776 6265273 complement(1371642..1372889) 1 NC_010645.1 phage integrase 1372889 6265273 BAV1280 Bordetella avium 197N phage integrase YP_785800.1 1371642 R 360910 CDS YP_785801.1 187477777 6265274 complement(1372841..1373044) 1 NC_010645.1 phage excisionase 1373044 6265274 BAV1281 Bordetella avium 197N phage excisionase YP_785801.1 1372841 R 360910 CDS YP_785802.1 187477778 6265275 complement(1373076..1373405) 1 NC_010645.1 phage protein 1373405 6265275 BAV1282 Bordetella avium 197N phage protein YP_785802.1 1373076 R 360910 CDS YP_785803.1 187477779 6265276 complement(<1373403..1374436) 1 NC_010645.1 phage methyltransferase 1374436 6265276 BAV1283 Bordetella avium 197N phage methyltransferase YP_785803.1 <1373403 R 360910 CDS YP_785804.1 187477780 6265277 complement(1374440..1374940) 1 NC_010645.1 phage methyltransferase 1374940 6265277 BAV1284 Bordetella avium 197N phage methyltransferase YP_785804.1 1374440 R 360910 CDS YP_785805.1 187477781 6265278 complement(1374941..1375315) 1 NC_010645.1 phage protein 1375315 6265278 BAV1285 Bordetella avium 197N phage protein YP_785805.1 1374941 R 360910 CDS YP_785806.1 187477782 6265279 complement(1375312..1376244) 1 NC_010645.1 phage protein 1376244 6265279 BAV1286 Bordetella avium 197N phage protein YP_785806.1 1375312 R 360910 CDS YP_785807.1 187477783 6265280 complement(1376241..1377143) 1 NC_010645.1 Required for efficient pilin antigenic variation; recombination associated protein 1377143 rdgC 6265280 rdgC Bordetella avium 197N recombination associated protein YP_785807.1 1376241 R 360910 CDS YP_785808.1 187477784 6265281 complement(1377522..1378016) 1 NC_010645.1 phage protein 1378016 6265281 BAV1289 Bordetella avium 197N phage protein YP_785808.1 1377522 R 360910 CDS YP_785809.1 187477785 6265282 complement(1378019..1378630) 1 NC_010645.1 phage protein 1378630 6265282 BAV1290 Bordetella avium 197N phage protein YP_785809.1 1378019 R 360910 CDS YP_785810.1 187477786 6265283 complement(1378631..1379281) 1 NC_010645.1 phage protein 1379281 6265283 BAV1291 Bordetella avium 197N phage protein YP_785810.1 1378631 R 360910 CDS YP_785811.1 187477787 6265284 complement(1379393..1379665) 1 NC_010645.1 phage protein 1379665 6265284 BAV1292 Bordetella avium 197N phage protein YP_785811.1 1379393 R 360910 CDS YP_785812.1 187477788 6265285 complement(1379766..1380092) 1 NC_010645.1 phage protein 1380092 6265285 BAV1293 Bordetella avium 197N phage protein YP_785812.1 1379766 R 360910 CDS YP_785813.1 187477789 6267844 complement(1380760..1381254) 1 NC_010645.1 phage protein 1381254 6267844 BAV1294 Bordetella avium 197N phage protein YP_785813.1 1380760 R 360910 CDS YP_785814.1 187477790 6265287 complement(1381381..1381647) 1 NC_010645.1 phage protein 1381647 6265287 BAV1295 Bordetella avium 197N phage protein YP_785814.1 1381381 R 360910 CDS YP_785815.1 187477791 6265288 complement(1381752..>1382471) 1 NC_010645.1 phage protein >1382471 6265288 BAV1296 Bordetella avium 197N phage protein YP_785815.1 1381752 R 360910 CDS YP_785816.1 187477792 6265289 complement(1382490..1382717) 1 NC_010645.1 phage protein 1382717 6265289 BAV1297 Bordetella avium 197N phage protein YP_785816.1 1382490 R 360910 CDS YP_785817.1 187477793 6265290 complement(1382739..1383221) 1 NC_010645.1 phage membrane protein 1383221 6265290 BAV1298 Bordetella avium 197N phage membrane protein YP_785817.1 1382739 R 360910 CDS YP_785818.1 187477794 6265291 complement(1383205..1384161) 1 NC_010645.1 phage protein 1384161 6265291 BAV1299 Bordetella avium 197N phage protein YP_785818.1 1383205 R 360910 CDS YP_785819.1 187477795 6265292 complement(1384189..1385271) 1 NC_010645.1 phage repressor 1385271 6265292 BAV1300 Bordetella avium 197N phage repressor YP_785819.1 1384189 R 360910 CDS YP_785820.1 187477796 6265293 1385535..1385741 1 NC_010645.1 phage protein 1385741 6265293 BAV1301 Bordetella avium 197N phage protein YP_785820.1 1385535 D 360910 CDS YP_785821.1 187477797 6265294 1385756..1386064 1 NC_010645.1 phage regulatory protein 1386064 6265294 BAV1302 Bordetella avium 197N phage regulatory protein YP_785821.1 1385756 D 360910 CDS YP_785822.1 187477798 6265295 1386064..1386537 1 NC_010645.1 phage protein 1386537 6265295 BAV1303 Bordetella avium 197N phage protein YP_785822.1 1386064 D 360910 CDS YP_785823.1 187477799 6265296 1386534..1386905 1 NC_010645.1 phage recombination protein 1386905 6265296 BAV1304 Bordetella avium 197N phage recombination protein YP_785823.1 1386534 D 360910 CDS YP_785824.1 187477800 6265297 <1386892..1387683 1 NC_010645.1 phage protein 1387683 6265297 BAV1305 Bordetella avium 197N phage protein YP_785824.1 <1386892 D 360910 CDS YP_785825.1 187477801 6265298 1387670..1388368 1 NC_010645.1 phage protein 1388368 6265298 BAV1306 Bordetella avium 197N phage protein YP_785825.1 1387670 D 360910 CDS YP_785826.1 187477802 6265299 1388365..1388736 1 NC_010645.1 phage endonuclease 1388736 6265299 BAV1307 Bordetella avium 197N phage endonuclease YP_785826.1 1388365 D 360910 CDS YP_785827.1 187477803 6265300 1388777..1389223 1 NC_010645.1 phage protein 1389223 6265300 BAV1308 Bordetella avium 197N phage protein YP_785827.1 1388777 D 360910 CDS YP_785828.1 187477804 6265301 1389233..1389589 1 NC_010645.1 phage protein 1389589 6265301 BAV1309 Bordetella avium 197N phage protein YP_785828.1 1389233 D 360910 CDS YP_785829.1 187477805 6265302 1389607..1389888 1 NC_010645.1 phage protein 1389888 6265302 BAV1310 Bordetella avium 197N phage protein YP_785829.1 1389607 D 360910 CDS YP_785830.1 187477806 6265303 1389942..1390454 1 NC_010645.1 phage protein 1390454 6265303 BAV1311 Bordetella avium 197N phage protein YP_785830.1 1389942 D 360910 CDS YP_785831.1 187477807 6265304 complement(1390469..1390795) 1 NC_010645.1 phage DNA-binding protein 1390795 6265304 BAV1312 Bordetella avium 197N phage DNA-binding protein YP_785831.1 1390469 R 360910 CDS YP_785832.1 187477808 6265305 complement(1390779..1391033) 1 NC_010645.1 phage protein 1391033 6265305 BAV1312A Bordetella avium 197N phage protein YP_785832.1 1390779 R 360910 CDS YP_785833.1 187477809 6265306 1391095..1391529 1 NC_010645.1 phage small subunit terminase 1391529 6265306 BAV1313 Bordetella avium 197N phage small subunit terminase YP_785833.1 1391095 D 360910 CDS YP_785834.1 187477810 6265307 <1391510..1392931 1 NC_010645.1 phage large subunit terminase 1392931 6265307 BAV1314 Bordetella avium 197N phage large subunit terminase YP_785834.1 <1391510 D 360910 CDS YP_785835.1 187477811 6265308 1392928..1394403 1 NC_010645.1 phage portal protein 1394403 6265308 BAV1315 Bordetella avium 197N phage portal protein YP_785835.1 1392928 D 360910 CDS YP_785836.1 187477812 6265309 1394348..1395196 1 NC_010645.1 phage head protein 1395196 6265309 BAV1316 Bordetella avium 197N phage head protein YP_785836.1 1394348 D 360910 CDS YP_785837.1 187477813 6265310 1395189..1396439 1 NC_010645.1 phage protein 1396439 6265310 BAV1317 Bordetella avium 197N phage protein YP_785837.1 1395189 D 360910 CDS YP_785838.1 187477814 6265311 1396442..1396909 1 NC_010645.1 encodes major structural protein, as shown by N-terminal sequencing of purified protein in L. Temple's lab; phage structural protein 1396909 6265311 BAV1318 Bordetella avium 197N phage structural protein YP_785838.1 1396442 D 360910 CDS YP_785839.1 187477815 6265312 1396925..1398004 1 NC_010645.1 phage protein 1398004 6265312 BAV1319 Bordetella avium 197N phage protein YP_785839.1 1396925 D 360910 CDS YP_785840.1 187477816 6265313 1398114..1398455 1 NC_010645.1 phage protein 1398455 6265313 BAV1320 Bordetella avium 197N phage protein YP_785840.1 1398114 D 360910 CDS YP_785841.1 187477817 6265314 1398457..1398882 1 NC_010645.1 phage protein 1398882 6265314 BAV1321 Bordetella avium 197N phage protein YP_785841.1 1398457 D 360910 CDS YP_785842.1 187477818 6265315 1398879..1399355 1 NC_010645.1 phage protein 1399355 6265315 BAV1322 Bordetella avium 197N phage protein YP_785842.1 1398879 D 360910 CDS YP_785843.1 187477819 6265316 1399352..1399735 1 NC_010645.1 phage protein 1399735 6265316 BAV1323 Bordetella avium 197N phage protein YP_785843.1 1399352 D 360910 CDS YP_785844.1 187477820 6265317 1399716..1400243 1 NC_010645.1 No significant database similarities; phage protein 1400243 6265317 BAV1324 Bordetella avium 197N phage protein YP_785844.1 1399716 D 360910 CDS YP_785845.1 187477821 6265318 1400252..1401760 1 NC_010645.1 phage protein 1401760 6265318 BAV1325 Bordetella avium 197N phage protein YP_785845.1 1400252 D 360910 CDS YP_785846.1 187477822 6265319 1401820..1402281 1 NC_010645.1 phage protein 1402281 6265319 BAV1326 Bordetella avium 197N phage protein YP_785846.1 1401820 D 360910 CDS YP_785847.1 187477823 6265320 1402293..1402718 1 NC_010645.1 phage protein 1402718 6265320 BAV1327 Bordetella avium 197N phage protein YP_785847.1 1402293 D 360910 CDS YP_785848.1 187477824 6265321 1402763..1402837 1 NC_010645.1 phage protein 1402837 6265321 BAV1328 Bordetella avium 197N phage protein YP_785848.1 1402763 D 360910 CDS YP_785849.1 187477825 6265322 1402839..1404452 1 NC_010645.1 phage tail tape-measure protein 1404452 6265322 BAV1329 Bordetella avium 197N phage tail tape-measure protein YP_785849.1 1402839 D 360910 CDS YP_785850.1 187477826 6265323 1404449..1405000 1 NC_010645.1 phage protein 1405000 6265323 BAV1330 Bordetella avium 197N phage protein YP_785850.1 1404449 D 360910 CDS YP_785851.1 187477827 6265324 1404988..1405299 1 NC_010645.1 phage protein 1405299 6265324 BAV1331 Bordetella avium 197N phage protein YP_785851.1 1404988 D 360910 CDS YP_785852.1 187477828 6265325 1405289..1406116 1 NC_010645.1 phage protein 1406116 6265325 BAV1332 Bordetella avium 197N phage protein YP_785852.1 1405289 D 360910 CDS YP_785853.1 187477829 6265326 1406101..1406808 1 NC_010645.1 phage baseplate protein 1406808 6265326 BAV1333 Bordetella avium 197N phage baseplate protein YP_785853.1 1406101 D 360910 CDS YP_785854.1 187477830 6265327 <1406805..1407149 1 NC_010645.1 phage protein 1407149 6265327 BAV1334 Bordetella avium 197N phage protein YP_785854.1 <1406805 D 360910 CDS YP_785855.1 187477831 6265328 1407142..1408332 1 NC_010645.1 phage protein 1408332 6265328 BAV1335 Bordetella avium 197N phage protein YP_785855.1 1407142 D 360910 CDS YP_785856.1 187477832 6265329 1408329..1408979 1 NC_010645.1 phage protein 1408979 6265329 BAV1336 Bordetella avium 197N phage protein YP_785856.1 1408329 D 360910 CDS YP_785857.1 187477833 6265330 1408982..1410130 1 NC_010645.1 N-terminus similar to phage tail proteins, such as Burkholderia cenocepacia phage BcepB1A tail fiber protein; C-terminus similar to glycine-rich proteins, such as Epstein-Barr virus; ebna-1 nuclear protein; bkrf1 and Mycobacterium tuberculosis H37Rv; pe-pgrs family protein; pe_pgrs13; phage tail fiber protein 1410130 6265330 BAV1337 Bordetella avium 197N phage tail fiber protein YP_785857.1 1408982 D 360910 CDS YP_785858.1 187477834 6265331 1410130..1410300 1 NC_010645.1 phage protein 1410300 6265331 BAV1337A Bordetella avium 197N phage protein YP_785858.1 1410130 D 360910 CDS YP_785859.1 187477835 6265332 1410369..1410602 1 NC_010645.1 phage protein 1410602 6265332 BAV1337B Bordetella avium 197N phage protein YP_785859.1 1410369 D 360910 CDS YP_785860.1 187477836 6265333 1410595..1411050 1 NC_010645.1 phage lysozyme 1411050 6265333 BAV1338 Bordetella avium 197N phage lysozyme YP_785860.1 1410595 D 360910 CDS YP_785861.1 187477837 6265334 <1411047..1411529 1 NC_010645.1 phage tail assembly protein 1411529 6265334 BAV1339A Bordetella avium 197N phage tail assembly protein YP_785861.1 <1411047 D 360910 CDS YP_785862.1 187477838 6265335 complement(1411724..1411993) 1 NC_010645.1 phage protein 1411993 6265335 BAV1340 Bordetella avium 197N phage protein YP_785862.1 1411724 R 360910 CDS YP_785863.1 187477839 6265336 complement(1412027..1412272) 1 NC_010645.1 phage protein 1412272 6265336 BAV1341 Bordetella avium 197N phage protein YP_785863.1 1412027 R 360910 CDS YP_785864.1 187477840 6265337 complement(1412328..>1412495) 1 NC_010645.1 phage protein >1412495 6265337 BAV1342 Bordetella avium 197N phage protein YP_785864.1 1412328 R 360910 CDS YP_785865.1 187477841 6267775 complement(1413148..1414332) 1 NC_010645.1 transporter 1414332 6267775 BAV1343 Bordetella avium 197N transporter YP_785865.1 1413148 R 360910 CDS YP_785866.1 187477842 6265339 complement(1414538..1415215) 1 NC_010645.1 phosphoglycolate phosphatase 1415215 gph 6265339 gph Bordetella avium 197N phosphoglycolate phosphatase YP_785866.1 1414538 R 360910 CDS YP_785867.1 187477843 6267109 complement(1415212..1415937) 1 NC_010645.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 1415937 pufX 6267109 pufX Bordetella avium 197N 3-demethylubiquinone-9 3-methyltransferase YP_785867.1 1415212 R 360910 CDS YP_785868.1 187477844 6267593 complement(1416012..1416596) 1 NC_010645.1 Previously sequenced as Bordetella avium outer membrane protein a precursor ompA SWALL:OMPA_BORAV (SWALL:Q05146) (194 aa) fasta scores: E(): 1.7e-71, 100 id in 194 aa; outer membrane protein A 1416596 ompA 6267593 ompA Bordetella avium 197N outer membrane protein A YP_785868.1 1416012 R 360910 CDS YP_785869.1 187477845 6267458 1416988..1419639 1 NC_010645.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1419639 gyrA 6267458 gyrA Bordetella avium 197N DNA gyrase subunit A YP_785869.1 1416988 D 360910 CDS YP_785870.1 187477846 6267140 1419647..1420777 1 NC_010645.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1420777 pdxF 6267140 pdxF Bordetella avium 197N phosphoserine aminotransferase YP_785870.1 1419647 D 360910 CDS YP_785871.1 187477847 6267495 1420770..1421852 1 NC_010645.1 P-protein (includes chorismate mutase and prephenate dehydratase) 1421852 pheA 6267495 pheA Bordetella avium 197N P-protein (includes chorismate mutase and prephenate dehydratase) YP_785871.1 1420770 D 360910 CDS YP_785872.1 187477848 6267524 1421872..1422993 1 NC_010645.1 histidinol-phosphate aminotransferase 1422993 hisC1 6267524 hisC1 Bordetella avium 197N histidinol-phosphate aminotransferase YP_785872.1 1421872 D 360910 CDS YP_785873.1 187477849 6267171 1422990..1423883 1 NC_010645.1 prephenate dehydrogenase 1423883 tyrA 6267171 tyrA Bordetella avium 197N prephenate dehydrogenase YP_785873.1 1422990 D 360910 CDS YP_785874.1 187477850 6267905 1423883..1425202 1 NC_010645.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1425202 aroA 6267905 aroA Bordetella avium 197N 3-phosphoshikimate 1-carboxyvinyltransferase YP_785874.1 1423883 D 360910 CDS YP_785875.1 187477851 6266654 1425221..1425889 1 NC_010645.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1425889 cmk 6266654 cmk Bordetella avium 197N cytidylate kinase YP_785875.1 1425221 D 360910 CDS YP_785876.1 187477852 6266796 1426148..1427860 1 NC_010645.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1427860 rpsA 6266796 rpsA Bordetella avium 197N 30S ribosomal protein S1 YP_785876.1 1426148 D 360910 CDS YP_785877.1 187477853 6267710 <1427863..1428222 1 NC_010645.1 integration host factor subunit beta 1428222 himD 6267710 himD Bordetella avium 197N integration host factor subunit beta YP_785877.1 <1427863 D 360910 CDS YP_785878.1 187477854 6267168 1428387..1428695 1 NC_010645.1 membrane protein 1428695 6267168 BAV1356 Bordetella avium 197N membrane protein YP_785878.1 1428387 D 360910 CDS YP_785879.1 187477855 6265340 <1428730..1429959 1 NC_010645.1 tetratricopeptide repeat protein 1429959 6265340 BAV1357 Bordetella avium 197N tetratricopeptide repeat protein YP_785879.1 <1428730 D 360910 CDS YP_785880.1 187477856 6265341 1429956..1430897 1 NC_010645.1 Similar to N-terminal half of Escherichia coli bifunctional protein HldE [includes: D-beta-d-heptose 7-phosphate kinase (EC 2.7.1.-); d-beta-d- heptose 1-phosphate adenosyltransferase (EC 2.7.7.-)] HldE SWALL:HLDE_ECOLI (SWALL:P76658) (477 aa) fasta scores: E(): 5.6e-48, 54.09 38d in 305 aa; D-beta-d-heptose 7-phosphate kinase 1430897 hldE' 6265341 hldE' Bordetella avium 197N D-beta-d-heptose 7-phosphate kinase YP_785880.1 1429956 D 360910 CDS YP_785881.1 187477857 6267183 1430894..1431892 1 NC_010645.1 ADP-L-glycero-D-manno-heptose-6-epimerase 1431892 hldD 6267183 hldD Bordetella avium 197N ADP-L-glycero-D-manno-heptose-6-epimerase YP_785881.1 1430894 D 360910 CDS YP_785882.1 187477858 6267182 1431996..1432385 1 NC_010645.1 hypothetical protein 1432385 6267182 BAV1360 Bordetella avium 197N hypothetical protein YP_785882.1 1431996 D 360910 CDS YP_785883.1 187477859 6265342 1432449..1433360 1 NC_010645.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1433360 cysM 6265342 cysM Bordetella avium 197N cysteine synthase B YP_785883.1 1432449 D 360910 CDS YP_785884.1 187477860 6266844 complement(1433406..1434545) 1 NC_010645.1 membrane-bound lytic murein transglycosylase B 1434545 mltB 6266844 mltB Bordetella avium 197N membrane-bound lytic murein transglycosylase B YP_785884.1 1433406 R 360910 CDS YP_785885.1 187477861 6267359 1434565..1435479 1 NC_010645.1 histone deacetylase family protein 1435479 6267359 BAV1363 Bordetella avium 197N histone deacetylase family protein YP_785885.1 1434565 D 360910 CDS YP_785886.1 187477862 6265343 1435550..1436299 1 NC_010645.1 Also similar to- BAV3265 (81.9); electron transfer flavoprotein subunit beta 1436299 etfB1 6265343 etfB1 Bordetella avium 197N electron transfer flavoprotein subunit beta YP_785886.1 1435550 D 360910 CDS YP_785887.1 187477863 6266936 1436302..1437231 1 NC_010645.1 Also similar to BAV3266 (81.9); electron transfer flavoprotein subunit alpha 1437231 etfA1 6266936 etfA1 Bordetella avium 197N electron transfer flavoprotein subunit alpha YP_785887.1 1436302 D 360910 CDS YP_785888.1 187477864 6266934 1437547..1439244 1 NC_010645.1 aspartate:alanine antiporter 1439244 aspT 6266934 aspT Bordetella avium 197N aspartate:alanine antiporter YP_785888.1 1437547 D 360910 CDS YP_785889.1 187477865 6266673 1439294..1441114 1 NC_010645.1 acyl-CoA dehydrogenase 1441114 6266673 BAV1367 Bordetella avium 197N acyl-CoA dehydrogenase YP_785889.1 1439294 D 360910 CDS YP_785890.1 187477866 6265344 1441216..1441857 1 NC_010645.1 antioxidant protein 1441857 6265344 BAV1368 Bordetella avium 197N antioxidant protein YP_785890.1 1441216 D 360910 CDS YP_785891.1 187477867 6265345 1441997..1442164 1 NC_010645.1 hypothetical protein 1442164 6265345 BAV1369 Bordetella avium 197N hypothetical protein YP_785891.1 1441997 D 360910 CDS YP_785892.1 187477868 6265346 1442349..1443935 1 NC_010645.1 radical SAM protein 1443935 6265346 BAV1370 Bordetella avium 197N radical SAM protein YP_785892.1 1442349 D 360910 CDS YP_785893.1 187477869 6265347 1444043..1444276 1 NC_010645.1 hypothetical protein 1444276 6265347 BAV1371 Bordetella avium 197N hypothetical protein YP_785893.1 1444043 D 360910 CDS YP_785894.1 187477870 6265348 complement(1444284..1445156) 1 NC_010645.1 membrane protein 1445156 6265348 BAV1372 Bordetella avium 197N membrane protein YP_785894.1 1444284 R 360910 CDS YP_785895.1 187477871 6265349 1445401..1445790 1 NC_010645.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1445790 rplS 6265349 rplS Bordetella avium 197N 50S ribosomal protein L19 YP_785895.1 1445401 D 360910 CDS YP_785896.1 187477872 6267689 1445953..1446663 1 NC_010645.1 hydrolase 1446663 6267689 BAV1374 Bordetella avium 197N hydrolase YP_785896.1 1445953 D 360910 CDS YP_785897.1 187477873 6265350 complement(1446670..1447461) 1 NC_010645.1 hydroxypyruvate isomerase 1447461 hyi 6265350 hyi Bordetella avium 197N hydroxypyruvate isomerase YP_785897.1 1446670 R 360910 CDS YP_785898.1 187477874 6267224 complement(1447487..1448383) 1 NC_010645.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 1448383 engC 6267224 engC Bordetella avium 197N ribosome-associated GTPase YP_785898.1 1447487 R 360910 CDS YP_785899.1 187477875 6266924 complement(1448380..1449639) 1 NC_010645.1 membrane-associated protease 1449639 6266924 BAV1377 Bordetella avium 197N membrane-associated protease YP_785899.1 1448380 R 360910 CDS YP_785900.1 187477876 6265351 1449694..1450239 1 NC_010645.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1450239 orn 6265351 orn Bordetella avium 197N oligoribonuclease YP_785900.1 1449694 D 360910 CDS YP_785901.1 187477877 6267463 complement(1450435..1451358) 1 NC_010645.1 phenylacetic acid degradation operon negative regulatory protein 1451358 paaX 6267463 paaX Bordetella avium 197N phenylacetic acid degradation operon negative regulatory protein YP_785901.1 1450435 R 360910 CDS YP_785902.1 187477878 6267477 1451517..1452506 1 NC_010645.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 1452506 paaA 6267477 paaA Bordetella avium 197N phenylacetate-CoA oxygenase subunit PaaA YP_785902.1 1451517 D 360910 CDS YP_785903.1 187477879 6267467 1452566..1452850 1 NC_010645.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 1452850 paaB 6267467 paaB Bordetella avium 197N phenylacetate-CoA oxygenase subunit PaaB YP_785903.1 1452566 D 360910 CDS YP_785904.1 187477880 6267468 1452860..1453624 1 NC_010645.1 phenylacetic acid degradation protein 1453624 paaC 6267468 paaC Bordetella avium 197N phenylacetic acid degradation protein YP_785904.1 1452860 D 360910 CDS YP_785905.1 187477881 6267469 <1453621..1454121 1 NC_010645.1 phenylacetic acid degradation protein 1454121 paaD 6267469 paaD Bordetella avium 197N phenylacetic acid degradation protein YP_785905.1 <1453621 D 360910 CDS YP_785906.1 187477882 6267470 1454133..1455221 1 NC_010645.1 phenylacetic acid degradation NADH oxidoreductase 1455221 paaE 6267470 paaE Bordetella avium 197N phenylacetic acid degradation NADH oxidoreductase YP_785906.1 1454133 D 360910 CDS YP_785907.1 187477883 6267471 1455275..1456939 1 NC_010645.1 phenylacetic acid degradation aldehyde dehydrogenase 1456939 paaZ 6267471 paaZ Bordetella avium 197N phenylacetic acid degradation aldehyde dehydrogenase YP_785907.1 1455275 D 360910 CDS YP_785908.1 187477884 6267478 1456950..1457738 1 NC_010645.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1457738 paaG 6267478 paaG Bordetella avium 197N enoyl-CoA hydratase YP_785908.1 1456950 D 360910 CDS YP_785909.1 187477885 6267472 1457738..1458202 1 NC_010645.1 phenylacetic acid degradation protein 1458202 paaI 6267472 paaI Bordetella avium 197N phenylacetic acid degradation protein YP_785909.1 1457738 D 360910 CDS YP_785910.1 187477886 6267473 1458266..1459582 1 NC_010645.1 phenylacetate-coenzyme A ligase 1459582 paaK 6267473 paaK Bordetella avium 197N phenylacetate-coenzyme A ligase YP_785910.1 1458266 D 360910 CDS YP_785911.1 187477887 6267476 complement(1459829..1460062) 1 NC_010645.1 hypothetical protein 1460062 6267476 BAV1389 Bordetella avium 197N hypothetical protein YP_785911.1 1459829 R 360910 CDS YP_785912.1 187477888 6265352 complement(1460218..>1460559) 1 NC_010645.1 hypothetical protein >1460559 6265352 BAV1390 Bordetella avium 197N hypothetical protein YP_785912.1 1460218 R 360910 CDS YP_785913.1 187477889 6265353 1460560..1461939 1 NC_010645.1 oxygen-independent coproporphyrinogen III oxidase 1461939 hemN 6265353 hemN Bordetella avium 197N oxygen-independent coproporphyrinogen III oxidase YP_785913.1 1460560 D 360910 CDS YP_785914.1 187477890 6267160 complement(1461940..1462683) 1 NC_010645.1 two-component response regulator 1462683 6267160 BAV1392 Bordetella avium 197N two-component response regulator YP_785914.1 1461940 R 360910 CDS YP_785915.1 187477891 6265354 1463149..1465101 1 NC_010645.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1465101 thrS 6265354 thrS Bordetella avium 197N threonyl-tRNA synthetase YP_785915.1 1463149 D 360910 CDS YP_785916.1 187477892 6267809 <1465173..1465670 1 NC_010645.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1465670 infC 6267809 infC Bordetella avium 197N translation initiation factor IF-3 YP_785916.1 <1465173 D 360910 CDS YP_785917.1 187477893 6266982 1465826..1466782 1 NC_010645.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 1466782 gsh-II 6266982 gsh-II Bordetella avium 197N glutathione synthetase YP_785917.1 1465826 D 360910 CDS YP_785918.1 187477894 6267120 1466796..1467194 1 NC_010645.1 PTS system IIa component 1467194 6267120 BAV1396 Bordetella avium 197N PTS system IIa component YP_785918.1 1466796 D 360910 CDS YP_785919.1 187477895 6265355 1467279..1467548 1 NC_010645.1 phosphocarrier protein HPr 1467548 phbH 6265355 phbH Bordetella avium 197N phosphocarrier protein HPr YP_785919.1 1467279 D 360910 CDS YP_785920.1 187477896 6267523 1467577..1469346 1 NC_010645.1 phosphoenolpyruvate-protein phosphotransferase 1469346 ptsI 6267523 ptsI Bordetella avium 197N phosphoenolpyruvate-protein phosphotransferase YP_785920.1 1467577 D 360910 CDS YP_785921.1 187477897 6267591 complement(1469377..1470645) 1 NC_010645.1 manganese transport protein 1470645 mntH 6267591 mntH Bordetella avium 197N manganese transport protein YP_785921.1 1469377 R 360910 CDS YP_785922.1 187477898 6267365 1470797..1471732 1 NC_010645.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 1471732 6267365 BAV1400 Bordetella avium 197N ornithine cyclodeaminase YP_785922.1 1470797 D 360910 CDS YP_785923.1 187477899 6265356 1471830..1472993 1 NC_010645.1 ABC transporter substrate binding protein 1472993 6265356 BAV1401 Bordetella avium 197N ABC transporter substrate binding protein YP_785923.1 1471830 D 360910 CDS YP_785924.1 187477900 6265357 complement(1473159..1473608) 1 NC_010645.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 1473608 dut 6265357 dut Bordetella avium 197N deoxyuridine 5'-triphosphate nucleotidohydrolase YP_785924.1 1473159 R 360910 CDS YP_785925.1 187477901 6266897 complement(1473647..1474093) 1 NC_010645.1 membrane protein 1474093 6266897 BAV1403 Bordetella avium 197N membrane protein YP_785925.1 1473647 R 360910 CDS YP_785926.1 187477902 6265358 complement(1474105..1474740) 1 NC_010645.1 membrane protein 1474740 6265358 BAV1404 Bordetella avium 197N membrane protein YP_785926.1 1474105 R 360910 CDS YP_785927.1 187477903 6265359 1474830..1475861 1 NC_010645.1 membrane-bound metal-dependent hydrolase 1475861 6265359 BAV1405 Bordetella avium 197N membrane-bound metal-dependent hydrolase YP_785927.1 1474830 D 360910 CDS YP_785928.1 187477904 6265360 1475871..1476578 1 NC_010645.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 1476578 pepE 6265360 pepE Bordetella avium 197N peptidase E YP_785928.1 1475871 D 360910 CDS YP_785929.1 187477905 6267500 complement(1476729..1477199) 1 NC_010645.1 AsnC family transcriptional regulator 1477199 6267500 BAV1407 Bordetella avium 197N AsnC family transcriptional regulator YP_785929.1 1476729 R 360910 CDS YP_785930.1 187477906 6265361 <1477263..1478261 1 NC_010645.1 permease 1478261 6265361 BAV1408 Bordetella avium 197N permease YP_785930.1 <1477263 D 360910 CDS YP_785931.1 187477907 6265362 complement(1478277..1479473) 1 NC_010645.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 1479473 coaBC 6265362 coaBC Bordetella avium 197N bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_785931.1 1478277 R 360910 CDS YP_785932.1 187477908 6267964 complement(1479522..1480037) 1 NC_010645.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1480037 lspA 6267964 lspA Bordetella avium 197N lipoprotein signal peptidase YP_785932.1 1479522 R 360910 CDS YP_785933.1 187477909 6266797 complement(1480040..1482901) 1 NC_010645.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1482901 ileS 6266797 ileS Bordetella avium 197N isoleucyl-tRNA synthetase YP_785933.1 1480040 R 360910 CDS YP_785934.1 187477910 6267233 complement(1482891..>1483856) 1 NC_010645.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase >1483856 ribF 6267233 ribF Bordetella avium 197N bifunctional riboflavin kinase/FMN adenylyltransferase YP_785934.1 1482891 R 360910 CDS YP_785935.1 187477911 6267654 1483905..1484573 1 NC_010645.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1484573 purN 6267654 purN Bordetella avium 197N phosphoribosylglycinamide formyltransferase YP_785935.1 1483905 D 360910 CDS YP_785936.1 187477912 6267603 1484613..1486064 1 NC_010645.1 S-adenosyl-l-methionine transferase 1486064 6267603 BAV1414 Bordetella avium 197N S-adenosyl-l-methionine transferase YP_785936.1 1484613 D 360910 CDS YP_785937.1 187477913 6265363 complement(1486071..1486436) 1 NC_010645.1 hypothetical protein 1486436 6265363 BAV1415 Bordetella avium 197N hypothetical protein YP_785937.1 1486071 R 360910 CDS YP_785938.1 187477914 6265364 1486687..1487895 1 NC_010645.1 stearoyl-CoA desaturase 1487895 6265364 BAV1416 Bordetella avium 197N stearoyl-CoA desaturase YP_785938.1 1486687 D 360910 CDS YP_785939.1 187477915 6265365 1487892..1490144 1 NC_010645.1 DNA helicase II 1490144 mutU 6265365 mutU Bordetella avium 197N DNA helicase II YP_785939.1 1487892 D 360910 CDS YP_785940.1 187477916 6267407 complement(1490500..>1492422) 1 NC_010645.1 ABC transporter ATP-binding protein >1492422 6267407 BAV1418 Bordetella avium 197N ABC transporter ATP-binding protein YP_785940.1 1490500 R 360910 CDS YP_785941.1 187477917 6265366 complement(1492419..1493309) 1 NC_010645.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1493309 6265366 BAV1419 Bordetella avium 197N N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_785941.1 1492419 R 360910 CDS YP_785942.1 187477918 6265367 complement(1493316..1494449) 1 NC_010645.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1494449 dapE 6265367 dapE Bordetella avium 197N succinyl-diaminopimelate desuccinylase YP_785942.1 1493316 R 360910 CDS YP_785943.1 187477919 6266859 complement(1494449..1495270) 1 NC_010645.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1495270 dapD 6266859 dapD Bordetella avium 197N 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_785943.1 1494449 R 360910 CDS YP_785944.1 187477920 6266858 complement(1495294..1496484) 1 NC_010645.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 1496484 dapC 6266858 dapC Bordetella avium 197N succinyldiaminopimelate transaminase YP_785944.1 1495294 R 360910 CDS YP_785945.1 187477921 6267869 complement(1496816..>1497934) 1 NC_010645.1 phage integrase >1497934 6267869 BAV1423 Bordetella avium 197N phage integrase YP_785945.1 1496816 R 360910 CDS YP_785946.1 187477922 6265368 complement(1497904..1498266) 1 NC_010645.1 phage excisionase 1498266 6265368 BAV1423A Bordetella avium 197N phage excisionase YP_785946.1 1497904 R 360910 CDS YP_785947.1 187477923 6265369 complement(1498263..1498523) 1 NC_010645.1 phage protein 1498523 6265369 BAV1423B Bordetella avium 197N phage protein YP_785947.1 1498263 R 360910 CDS YP_785948.1 187477924 6265370 complement(1498558..1498731) 1 NC_010645.1 phage protein 1498731 6265370 BAV1423C Bordetella avium 197N phage protein YP_785948.1 1498558 R 360910 CDS YP_785949.1 187477925 6265371 complement(1498810..1499841) 1 NC_010645.1 phage recombination protein 1499841 recT 6265371 recT Bordetella avium 197N phage recombination protein YP_785949.1 1498810 R 360910 CDS YP_785950.1 187477926 6267634 complement(1499838..1500692) 1 NC_010645.1 phage protein 1500692 6267634 BAV1425 Bordetella avium 197N phage protein YP_785950.1 1499838 R 360910 CDS YP_785951.1 187477927 6265372 complement(1500696..1500881) 1 NC_010645.1 phage protein 1500881 6265372 BAV1426 Bordetella avium 197N phage protein YP_785951.1 1500696 R 360910 CDS YP_785952.1 187477928 6265373 complement(1500878..1501165) 1 NC_010645.1 phage protein 1501165 6265373 BAV1427 Bordetella avium 197N phage protein YP_785952.1 1500878 R 360910 CDS YP_785953.1 187477929 6265374 complement(1501235..1501984) 1 NC_010645.1 antirepressor 1501984 6265374 BAV1428 Bordetella avium 197N antirepressor YP_785953.1 1501235 R 360910 CDS YP_785954.1 187477930 6265375 1502337..1502600 1 NC_010645.1 hypothetical gene not on same strand as others in the region; phage protein 1502600 6265375 BAV1429 Bordetella avium 197N phage protein YP_785954.1 1502337 D 360910 CDS YP_785955.1 187477931 6265376 complement(1502601..1502726) 1 NC_010645.1 phage protein 1502726 6265376 BAV1430 Bordetella avium 197N phage protein YP_785955.1 1502601 R 360910 CDS YP_785956.1 187477932 6265377 complement(1502778..>1503002) 1 NC_010645.1 phage protein >1503002 6265377 BAV1431 Bordetella avium 197N phage protein YP_785956.1 1502778 R 360910 CDS YP_785957.1 187477933 6265378 complement(1503034..>1503126) 1 NC_010645.1 phage protein >1503126 6265378 BAV1432 Bordetella avium 197N phage protein YP_785957.1 1503034 R 360910 CDS YP_785958.1 187477934 6265379 complement(1503554..1504108) 1 NC_010645.1 phage protein 1504108 6265379 BAV1434 Bordetella avium 197N phage protein YP_785958.1 1503554 R 360910 CDS YP_785959.1 187477935 6265380 complement(1504110..1504532) 1 NC_010645.1 phage protein 1504532 6265380 BAV1435 Bordetella avium 197N phage protein YP_785959.1 1504110 R 360910 CDS YP_785960.1 187477936 6265381 complement(1504791..1505153) 1 NC_010645.1 phage repressor 1505153 6265381 BAV1436 Bordetella avium 197N phage repressor YP_785960.1 1504791 R 360910 CDS YP_785961.1 187477937 6265382 1505226..1505447 1 NC_010645.1 outside B. bronchiseptica; phage protein 1505447 6265382 BAV1437 Bordetella avium 197N phage protein YP_785961.1 1505226 D 360910 CDS YP_785962.1 187477938 6265383 1505440..1505706 1 NC_010645.1 phage protein 1505706 6265383 BAV1438 Bordetella avium 197N phage protein YP_785962.1 1505440 D 360910 CDS YP_785963.1 187477939 6265384 complement(1505784..1506224) 1 NC_010645.1 phage protein 1506224 6265384 BAV1439 Bordetella avium 197N phage protein YP_785963.1 1505784 R 360910 CDS YP_785964.1 187477940 6265385 1506268..1506531 1 NC_010645.1 phage protein 1506531 6265385 BAV1440 Bordetella avium 197N phage protein YP_785964.1 1506268 D 360910 CDS YP_785965.1 187477941 6265386 complement(1506863..1507249) 1 NC_010645.1 phage protein 1507249 6265386 BAV1441 Bordetella avium 197N phage protein YP_785965.1 1506863 R 360910 CDS YP_785966.1 187477942 6265387 1507333..1507731 1 NC_010645.1 phage protein 1507731 6265387 BAV1442 Bordetella avium 197N phage protein YP_785966.1 1507333 D 360910 CDS YP_785967.1 187477943 6265388 1507743..1507922 1 NC_010645.1 phage protein 1507922 6265388 BAV1442A Bordetella avium 197N phage protein YP_785967.1 1507743 D 360910 CDS YP_785968.1 187477944 6265389 1508037..1508519 1 NC_010645.1 phage protein 1508519 6265389 BAV1443 Bordetella avium 197N phage protein YP_785968.1 1508037 D 360910 CDS YP_785969.1 187477945 6265390 <1508516..1508767 1 NC_010645.1 phage protein 1508767 6265390 BAV1444 Bordetella avium 197N phage protein YP_785969.1 <1508516 D 360910 CDS YP_785970.1 187477946 6265391 1508764..1509708 1 NC_010645.1 phage protein 1509708 6265391 BAV1445 Bordetella avium 197N phage protein YP_785970.1 1508764 D 360910 CDS YP_785971.1 187477947 6265392 1509705..1510187 1 NC_010645.1 phage protein 1510187 6265392 BAV1446 Bordetella avium 197N phage protein YP_785971.1 1509705 D 360910 CDS YP_785972.1 187477948 6265393 1510184..1510837 1 NC_010645.1 phage protein 1510837 6265393 BAV1447 Bordetella avium 197N phage protein YP_785972.1 1510184 D 360910 CDS YP_785973.1 187477949 6265394 1510830..1511147 1 NC_010645.1 phage protein 1511147 6265394 BAV1448 Bordetella avium 197N phage protein YP_785973.1 1510830 D 360910 CDS YP_785974.1 187477950 6265395 complement(1511064..1511435) 1 NC_010645.1 hypothetical gene located on opposite strand from others in this region; phage protein 1511435 6265395 BAV1449 Bordetella avium 197N phage protein YP_785974.1 1511064 R 360910 CDS YP_785975.1 187477951 6265396 1511680..1512012 1 NC_010645.1 phage protein 1512012 6265396 BAV1450 Bordetella avium 197N phage protein YP_785975.1 1511680 D 360910 CDS YP_785976.1 187477952 6265397 1512012..1512413 1 NC_010645.1 Similar to the N-terminal region of Bacteriophage T4 DNA packaging protein gp17 17 SWALL:VG17_BPT4 (SWALL:P17312) (610 aa) fasta scores: E(): 7.7, 25 38d in 124 aa; phage protein 1512413 6265397 BAV1451 Bordetella avium 197N phage protein YP_785976.1 1512012 D 360910 CDS YP_785977.1 187477953 6265398 1512410..1512697 1 NC_010645.1 phage protein 1512697 6265398 BAV1452 Bordetella avium 197N phage protein YP_785977.1 1512410 D 360910 CDS YP_785978.1 187477954 6265399 complement(1512701..1513204) 1 NC_010645.1 hypothetical gene located on opposite strand from others in this region; phage protein 1513204 6265399 BAV1453 Bordetella avium 197N phage protein YP_785978.1 1512701 R 360910 CDS YP_785979.1 187477955 6265400 1513524..1514648 1 NC_010645.1 phage protein 1514648 6265400 BAV1454 Bordetella avium 197N phage protein YP_785979.1 1513524 D 360910 CDS YP_785980.1 187477956 6265401 1514705..1515034 1 NC_010645.1 phage protein 1515034 6265401 BAV1454A Bordetella avium 197N phage protein YP_785980.1 1514705 D 360910 CDS YP_785981.1 187477957 6265402 complement(1515064..1515342) 1 NC_010645.1 phage protein 1515342 6265402 BAV1455 Bordetella avium 197N phage protein YP_785981.1 1515064 R 360910 CDS YP_785982.1 187477958 6265403 complement(1515329..1515595) 1 NC_010645.1 phage protein 1515595 6265403 BAV1456 Bordetella avium 197N phage protein YP_785982.1 1515329 R 360910 CDS YP_785983.1 187477959 6265404 1515776..1516159 1 NC_010645.1 phage protein 1516159 6265404 BAV1457 Bordetella avium 197N phage protein YP_785983.1 1515776 D 360910 CDS YP_785984.1 187477960 6265406 <1516356..1516838 1 NC_010645.1 terminase small subunit 1516838 6265406 BAV1459 Bordetella avium 197N terminase small subunit YP_785984.1 <1516356 D 360910 CDS YP_785985.1 187477961 6265407 1516839..1518566 1 NC_010645.1 terminase large subunit 1518566 6265407 BAV1460 Bordetella avium 197N terminase large subunit YP_785985.1 1516839 D 360910 CDS YP_785986.1 187477962 6265408 1518568..1518723 1 NC_010645.1 phage protein 1518723 6265408 BAV1461 Bordetella avium 197N phage protein YP_785986.1 1518568 D 360910 CDS YP_785987.1 187477963 6265409 1518720..1519952 1 NC_010645.1 phage portal protein 1519952 6265409 BAV1462 Bordetella avium 197N phage portal protein YP_785987.1 1518720 D 360910 CDS YP_785988.1 187477964 6265410 1519961..1520578 1 NC_010645.1 phage capsid protease 1520578 6265410 BAV1463 Bordetella avium 197N phage capsid protease YP_785988.1 1519961 D 360910 CDS YP_785989.1 187477965 6265411 1520591..1521814 1 NC_010645.1 major capsid protein 1521814 6265411 BAV1464 Bordetella avium 197N major capsid protein YP_785989.1 1520591 D 360910 CDS YP_785990.1 187477966 6265412 <1521822..1522172 1 NC_010645.1 phage protein 1522172 6265412 BAV1465 Bordetella avium 197N phage protein YP_785990.1 <1521822 D 360910 CDS YP_785991.1 187477967 6265413 1522183..1522521 1 NC_010645.1 head-tail adaptor protein 1522521 6265413 BAV1466 Bordetella avium 197N head-tail adaptor protein YP_785991.1 1522183 D 360910 CDS YP_785992.1 187477968 6265414 1522518..1523012 1 NC_010645.1 phage protein 1523012 6265414 BAV1467 Bordetella avium 197N phage protein YP_785992.1 1522518 D 360910 CDS YP_785993.1 187477969 6265415 1523005..1523355 1 NC_010645.1 phage protein 1523355 6265415 BAV1468 Bordetella avium 197N phage protein YP_785993.1 1523005 D 360910 CDS YP_785994.1 187477970 6265416 <1523352..1523795 1 NC_010645.1 phage protein 1523795 6265416 BAV1469 Bordetella avium 197N phage protein YP_785994.1 <1523352 D 360910 CDS YP_785995.1 187477971 6265417 1523867..1524514 1 NC_010645.1 major tail protein 1524514 6265417 BAV1470 Bordetella avium 197N major tail protein YP_785995.1 1523867 D 360910 CDS YP_785996.1 187477972 6265418 1524548..1524865 1 NC_010645.1 phage protein 1524865 6265418 BAV1471 Bordetella avium 197N phage protein YP_785996.1 1524548 D 360910 CDS YP_785997.1 187477973 6265419 1524865..1525173 1 NC_010645.1 phage protein 1525173 6265419 BAV1472 Bordetella avium 197N phage protein YP_785997.1 1524865 D 360910 CDS YP_785998.1 187477974 6265420 1525196..1530745 1 NC_010645.1 phage tail tape measure protein 1530745 6265420 BAV1473 Bordetella avium 197N phage tail tape measure protein YP_785998.1 1525196 D 360910 CDS YP_785999.1 187477975 6265421 1530742..1531632 1 NC_010645.1 phage protein 1531632 6265421 BAV1474 Bordetella avium 197N phage protein YP_785999.1 1530742 D 360910 CDS YP_786000.1 187477976 6265422 1531634..1532563 1 NC_010645.1 phage protein 1532563 6265422 BAV1475 Bordetella avium 197N phage protein YP_786000.1 1531634 D 360910 CDS YP_786001.1 187477977 6265423 1532570..1532962 1 NC_010645.1 phage protein 1532962 6265423 BAV1476 Bordetella avium 197N phage protein YP_786001.1 1532570 D 360910 CDS YP_786002.1 187477978 6265424 <1532959..1533327 1 NC_010645.1 ; besides other Bordetellae; phage protein 1533327 6265424 BAV1477 Bordetella avium 197N phage protein YP_786002.1 <1532959 D 360910 CDS YP_786003.1 187477979 6265425 1533328..1534149 1 NC_010645.1 phage protein 1534149 6265425 BAV1478 Bordetella avium 197N phage protein YP_786003.1 1533328 D 360910 CDS YP_786004.1 187477980 6265426 1534154..1534369 1 NC_010645.1 phage protein 1534369 6265426 BAV1479 Bordetella avium 197N phage protein YP_786004.1 1534154 D 360910 CDS YP_786005.1 187477981 6265427 1534369..1534920 1 NC_010645.1 phage lysozyme 1534920 6265427 BAV1480 Bordetella avium 197N phage lysozyme YP_786005.1 1534369 D 360910 CDS YP_786006.1 187477982 6265428 complement(1534964..1535488) 1 NC_010645.1 phage protein 1535488 6265428 BAV1480A Bordetella avium 197N phage protein YP_786006.1 1534964 R 360910 CDS YP_786007.1 187477983 6265429 1535707..1536228 1 NC_010645.1 phage protein 1536228 6265429 BAV1481 Bordetella avium 197N phage protein YP_786007.1 1535707 D 360910 CDS YP_786008.1 187477984 6265430 complement(1536357..1536641) 1 NC_010645.1 except other Bordetellae. Similar to N-terminal region of the Bordetellae proteins; phage protein 1536641 6265430 BAV1482 Bordetella avium 197N phage protein YP_786008.1 1536357 R 360910 CDS YP_786009.1 187477985 6265431 1537083..1537295 1 NC_010645.1 hypothetical protein 1537295 6265431 BAV1483 Bordetella avium 197N hypothetical protein YP_786009.1 1537083 D 360910 CDS YP_786010.1 187477986 6265432 1537594..1537971 1 NC_010645.1 membrane protein 1537971 6265432 BAV1484 Bordetella avium 197N membrane protein YP_786010.1 1537594 D 360910 CDS YP_786011.1 187477987 6265433 complement(1538352..1538540) 1 NC_010645.1 hypothetical protein 1538540 6265433 BAV1485 Bordetella avium 197N hypothetical protein YP_786011.1 1538352 R 360910 CDS YP_786012.1 187477988 6265434 complement(1538731..1539051) 1 NC_010645.1 hypothetical protein 1539051 6265434 BAV1486 Bordetella avium 197N hypothetical protein YP_786012.1 1538731 R 360910 CDS YP_786013.1 187477989 6265435 complement(1539048..1539347) 1 NC_010645.1 hypothetical protein 1539347 6265435 BAV1487 Bordetella avium 197N hypothetical protein YP_786013.1 1539048 R 360910 CDS YP_786014.1 187477990 6265436 1539927..1540160 1 NC_010645.1 hemolysin 1540160 6265436 BAV1488 Bordetella avium 197N hemolysin YP_786014.1 1539927 D 360910 CDS YP_786015.1 187477991 6265437 complement(1540348..1542105) 1 NC_010645.1 ABC transporter ATP-binding protein 1542105 6265437 BAV1489 Bordetella avium 197N ABC transporter ATP-binding protein YP_786015.1 1540348 R 360910 CDS YP_786016.1 187477992 6265438 complement(1542572..1542832) 1 NC_010645.1 Similar only to exported proteins in Bordetellae; hypothetical protein 1542832 6265438 BAV1490 Bordetella avium 197N hypothetical protein YP_786016.1 1542572 R 360910 CDS YP_786017.1 187477993 6265439 1543052..1543372 1 NC_010645.1 outside the Bordetellae; hypothetical protein 1543372 6265439 BAV1491 Bordetella avium 197N hypothetical protein YP_786017.1 1543052 D 360910 CDS YP_786018.1 187477994 6265440 1543680..1543883 1 NC_010645.1 Also similar to BAV2327, BAV1494, BAV2092 and BAV3424.; cold shock-like protein 1543883 cspA1 6265440 cspA1 Bordetella avium 197N cold shock-like protein YP_786018.1 1543680 D 360910 CDS YP_786019.1 187477995 6266814 1544161..1544706 1 NC_010645.1 hypothetical protein 1544706 6266814 BAV1493 Bordetella avium 197N hypothetical protein YP_786019.1 1544161 D 360910 CDS YP_786020.1 187477996 6265441 1544962..1545168 1 NC_010645.1 Also similar to BAV1492, BAV2327, BAV2092 and BAV3424.; cold shock-like protein 1545168 cspA2 6265441 cspA2 Bordetella avium 197N cold shock-like protein YP_786020.1 1544962 D 360910 CDS YP_786021.1 187477997 6266815 complement(1545238..1545816) 1 NC_010645.1 hypothetical protein 1545816 6266815 BAV1495 Bordetella avium 197N hypothetical protein YP_786021.1 1545238 R 360910 CDS YP_786022.1 187477998 6265442 1545996..1547306 1 NC_010645.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1547306 tig 6265442 tig Bordetella avium 197N trigger factor YP_786022.1 1545996 D 360910 CDS YP_786023.1 187477999 6267811 1547309..1547962 1 NC_010645.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1547962 clpP 6267811 clpP Bordetella avium 197N ATP-dependent Clp protease proteolytic subunit YP_786023.1 1547309 D 360910 CDS YP_786024.1 187478000 6266792 1548066..1549364 1 NC_010645.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1549364 clpX 6266792 clpX Bordetella avium 197N ATP-dependent protease ATP-binding subunit ClpX YP_786024.1 1548066 D 360910 CDS YP_786025.1 187478001 6266794 1549539..1551971 1 NC_010645.1 ATP-dependent protease La 1551971 capR 6266794 capR Bordetella avium 197N ATP-dependent protease La YP_786025.1 1549539 D 360910 CDS YP_786026.1 187478002 6266754 complement(1552207..1553703) 1 NC_010645.1 GntR family transcriptional regulator 1553703 6266754 BAV1500 Bordetella avium 197N GntR family transcriptional regulator YP_786026.1 1552207 R 360910 CDS YP_786027.1 187478003 6265443 1553811..1555055 1 NC_010645.1 benzoate membrane transport protein 1555055 benE 6265443 benE Bordetella avium 197N benzoate membrane transport protein YP_786027.1 1553811 D 360910 CDS YP_786028.1 187478004 6266697 complement(1555215..1556408) 1 NC_010645.1 sugar efflux transporter 1556408 sotB 6266697 sotB Bordetella avium 197N sugar efflux transporter YP_786028.1 1555215 R 360910 CDS YP_786029.1 187478005 6267764 complement(1556854..1557495) 1 NC_010645.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1557495 exra 6267764 exra Bordetella avium 197N LexA repressor YP_786029.1 1556854 R 360910 CDS YP_786030.1 187478006 6266943 complement(1557796..1558998) 1 NC_010645.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1558998 tyrB 6266943 tyrB Bordetella avium 197N aromatic amino acid aminotransferase YP_786030.1 1557796 R 360910 CDS YP_786031.1 187478007 6267906 1559074..1561104 1 NC_010645.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1561104 uvrB 6267906 uvrB Bordetella avium 197N excinuclease ABC subunit B YP_786031.1 1559074 D 360910 CDS YP_786032.1 187478008 6267923 1561354..1561845 1 NC_010645.1 low molecular weight protein-tyrosine-phosphatase 1561845 ptpA 6267923 ptpA Bordetella avium 197N low molecular weight protein-tyrosine-phosphatase YP_786032.1 1561354 D 360910 CDS YP_786033.1 187478009 6267590 1562035..1562568 1 NC_010645.1 DNA-binding protein 1562568 6267590 BAV1507 Bordetella avium 197N DNA-binding protein YP_786033.1 1562035 D 360910 CDS YP_786034.1 187478010 6265444 1562590..1563801 1 NC_010645.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1563801 iscS 6265444 iscS Bordetella avium 197N cysteine desulfurase YP_786034.1 1562590 D 360910 CDS YP_786035.1 187478011 6267251 1563838..1564242 1 NC_010645.1 scaffold protein 1564242 iscU 6267251 iscU Bordetella avium 197N scaffold protein YP_786035.1 1563838 D 360910 CDS YP_786036.1 187478012 6267252 1564244..1564567 1 NC_010645.1 iron-sulfur cluster assembly protein 1564567 iscA 6267252 iscA Bordetella avium 197N iron-sulfur cluster assembly protein YP_786036.1 1564244 D 360910 CDS YP_786037.1 187478013 6267250 1564571..1565077 1 NC_010645.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1565077 hscB 6267250 hscB Bordetella avium 197N co-chaperone HscB YP_786037.1 1564571 D 360910 CDS YP_786038.1 187478014 6267208 <1565077..1566972 1 NC_010645.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1566972 hscA 6267208 hscA Bordetella avium 197N chaperone protein HscA YP_786038.1 <1565077 D 360910 CDS YP_786039.1 187478015 6267207 1566981..1567322 1 NC_010645.1 ferredoxin, 2Fe-2S 1567322 fdx 6267207 fdx Bordetella avium 197N ferredoxin, 2Fe-2S YP_786039.1 1566981 D 360910 CDS YP_786040.1 187478016 6266966 1567322..1567516 1 NC_010645.1 hypothetical protein 1567516 6266966 BAV1514 Bordetella avium 197N hypothetical protein YP_786040.1 1567322 D 360910 CDS YP_786041.1 187478017 6265445 1567631..1568527 1 NC_010645.1 Similar over its C-terminal region to many methylglyoxal synthases including Escherichia coli,Escherichia coli O157:H7, and Shigella flexneri methylglyoxal synthase mgsA SWALL:MGSA_ECOLI (SWALL:P37066) (152 aa) fasta scores: E(): 0.03, 32.57 38d in 132 aa; methylglyoxal synthase 1568527 mgsA 6265445 mgsA Bordetella avium 197N methylglyoxal synthase YP_786041.1 1567631 D 360910 CDS YP_786042.1 187478018 6267348 complement(1568572..1568859) 1 NC_010645.1 membrane protein 1568859 6267348 BAV1516 Bordetella avium 197N membrane protein YP_786042.1 1568572 R 360910 CDS YP_786043.1 187478019 6265446 complement(1568873..1570387) 1 NC_010645.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1570387 lysS 6265446 lysS Bordetella avium 197N lysyl-tRNA synthetase YP_786043.1 1568873 R 360910 CDS YP_786044.1 187478020 6266675 complement(1570394..1571143) 1 NC_010645.1 short chain dehydrogenase 1571143 6266675 BAV1518 Bordetella avium 197N short chain dehydrogenase YP_786044.1 1570394 R 360910 CDS YP_786045.1 187478021 6265447 complement(join(1571194..1572216,1572218..1572298)) 1 NC_010645.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 1572298 prfB 6265447 prfB Bordetella avium 197N peptide chain release factor 2 YP_786045.1 1571194 R 360910 CDS YP_786046.1 187478022 6267569 complement(1572405..>1574111) 1 NC_010645.1 single-stranded-DNA-specific exonuclease >1574111 recJ 6267569 recJ Bordetella avium 197N single-stranded-DNA-specific exonuclease YP_786046.1 1572405 R 360910 CDS YP_786047.1 187478023 6267629 complement(1574093..1575055) 1 NC_010645.1 hypothetical protein 1575055 6267629 BAV1521 Bordetella avium 197N hypothetical protein YP_786047.1 1574093 R 360910 CDS YP_786048.1 187478024 6265448 <1575159..1576439 1 NC_010645.1 lipoprotein releasing system, transmembrane protein 1576439 lolE 6265448 lolE Bordetella avium 197N lipoprotein releasing system, transmembrane protein YP_786048.1 <1575159 D 360910 CDS YP_786049.1 187478025 6267305 1576432..1577124 1 NC_010645.1 lipoprotein releasing system, ATP-binding protein 1577124 lolD 6267305 lolD Bordetella avium 197N lipoprotein releasing system, ATP-binding protein YP_786049.1 1576432 D 360910 CDS YP_786050.1 187478026 6267304 1577127..1577927 1 NC_010645.1 deoxyribonuclease 1577927 6267304 BAV1524 Bordetella avium 197N deoxyribonuclease YP_786050.1 1577127 D 360910 CDS YP_786051.1 187478027 6265449 1578067..1578300 1 NC_010645.1 hypothetical protein 1578300 6265449 BAV1525 Bordetella avium 197N hypothetical protein YP_786051.1 1578067 D 360910 CDS YP_786052.1 187478028 6265450 1578333..1578911 1 NC_010645.1 membrane protein 1578911 6265450 BAV1526 Bordetella avium 197N membrane protein YP_786052.1 1578333 D 360910 CDS YP_786053.1 187478029 6265451 complement(1578976..1581249) 1 NC_010645.1 aldehyde dehydrogenase 1581249 6265451 BAV1527 Bordetella avium 197N aldehyde dehydrogenase YP_786053.1 1578976 R 360910 CDS YP_786054.1 187478030 6265452 complement(1581292..1581978) 1 NC_010645.1 hydrolase 1581978 6265452 BAV1528 Bordetella avium 197N hydrolase YP_786054.1 1581292 R 360910 CDS YP_786055.1 187478031 6265453 complement(1581975..1583048) 1 NC_010645.1 hypothetical protein 1583048 6265453 BAV1529 Bordetella avium 197N hypothetical protein YP_786055.1 1581975 R 360910 CDS YP_786056.1 187478032 6265454 complement(1583084..1583905) 1 NC_010645.1 alpha/beta hydrolase 1583905 6265454 BAV1530 Bordetella avium 197N alpha/beta hydrolase YP_786056.1 1583084 R 360910 CDS YP_786057.1 187478033 6265455 complement(1583905..1584678) 1 NC_010645.1 Also similar to BAV2744 (79.68 38d); maleate cis-trans isomerase 1584678 maiA1 6265455 maiA1 Bordetella avium 197N maleate cis-trans isomerase YP_786057.1 1583905 R 360910 CDS YP_786058.1 187478034 6267326 <1584984..1586141 1 NC_010645.1 salicylate hydroxylase 1586141 6267326 BAV1532 Bordetella avium 197N salicylate hydroxylase YP_786058.1 <1584984 D 360910 CDS YP_786059.1 187478035 6265456 1586229..1586750 1 NC_010645.1 isoquinoline 1-oxidoreductase subunit alpha 1586750 iorA 6265456 iorA Bordetella avium 197N isoquinoline 1-oxidoreductase subunit alpha YP_786059.1 1586229 D 360910 CDS YP_786060.1 187478036 6267247 1586747..1589542 1 NC_010645.1 bifunctional protein,oxidoreductase/cytochrome subunits 1589542 6267247 BAV1534 Bordetella avium 197N bifunctional protein,oxidoreductase/cytochrome subunits YP_786060.1 1586747 D 360910 CDS YP_786061.1 187478037 6265457 1589603..1590919 1 NC_010645.1 transporter 1590919 6265457 BAV1535 Bordetella avium 197N transporter YP_786061.1 1589603 D 360910 CDS YP_786062.1 187478038 6265458 complement(1590958..1591425) 1 NC_010645.1 MarR family transcriptional regulator 1591425 6265458 BAV1536 Bordetella avium 197N MarR family transcriptional regulator YP_786062.1 1590958 R 360910 CDS YP_786063.1 187478039 6265459 complement(1591695..1592708) 1 NC_010645.1 LysR family transcriptional regulator 1592708 6265459 BAV1537 Bordetella avium 197N LysR family transcriptional regulator YP_786063.1 1591695 R 360910 CDS YP_786064.1 187478040 6265460 1592821..1594116 1 NC_010645.1 transporter 1594116 6265460 BAV1538 Bordetella avium 197N transporter YP_786064.1 1592821 D 360910 CDS YP_786065.1 187478041 6265461 1594132..1595634 1 NC_010645.1 hypothetical protein 1595634 6265461 BAV1539 Bordetella avium 197N hypothetical protein YP_786065.1 1594132 D 360910 CDS YP_786066.1 187478042 6265462 1595761..1596816 1 NC_010645.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1596816 6265462 BAV1540 Bordetella avium 197N ribosomal RNA large subunit methyltransferase N YP_786066.1 1595761 D 360910 CDS YP_786067.1 187478043 6265463 1597094..1599361 1 NC_010645.1 competence protein 1599361 6265463 BAV1541 Bordetella avium 197N competence protein YP_786067.1 1597094 D 360910 CDS YP_786068.1 187478044 6265464 complement(1599453..1600718) 1 NC_010645.1 signaling protein 1600718 6265464 BAV1542 Bordetella avium 197N signaling protein YP_786068.1 1599453 R 360910 CDS YP_786069.1 187478045 6265465 1601143..1602069 1 NC_010645.1 D-(-)-3-hydroxybutyrate oligomer hydrolase 1602069 6265465 BAV1543 Bordetella avium 197N D-(-)-3-hydroxybutyrate oligomer hydrolase YP_786069.1 1601143 D 360910 CDS YP_786070.1 187478046 6265466 1602102..1602947 1 NC_010645.1 phosphoesterase 1602947 6265466 BAV1544 Bordetella avium 197N phosphoesterase YP_786070.1 1602102 D 360910 CDS YP_786071.1 187478047 6265467 1602997..1603560 1 NC_010645.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 1603560 greB 6265467 greB Bordetella avium 197N transcription elongation factor GreB YP_786071.1 1602997 D 360910 CDS YP_786072.1 187478048 6267115 <1603951..1607988 1 NC_010645.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1607988 purL 6267115 purL Bordetella avium 197N phosphoribosylformylglycinamidine synthase YP_786072.1 <1603951 D 360910 CDS YP_786073.1 187478049 6265468 <1609205..>1609384 1 NC_010645.1 hypothetical protein >1609384 6265468 BAV1549 Bordetella avium 197N hypothetical protein YP_786073.1 <1609205 D 360910 CDS YP_786074.1 187478050 6265469 <1609446..1609580 1 NC_010645.1 hypothetical protein 1609580 6265469 BAV1550 Bordetella avium 197N hypothetical protein YP_786074.1 <1609446 D 360910 CDS YP_786075.1 187478051 6265470 1609779..1615820 1 NC_010645.1 Similar to fhaS and fhaL of B. bronchiseptica. It is also located at the same position as B. bronchiseptica fhaS; filamentous hemagglutinin/adhesin 1615820 6265470 BAV1551 Bordetella avium 197N filamentous hemagglutinin/adhesin YP_786075.1 1609779 D 360910 CDS YP_786076.1 187478052 6265471 1615909..1617381 1 NC_010645.1 amidohydrolase/peptidase 1617381 6265471 BAV1552 Bordetella avium 197N amidohydrolase/peptidase YP_786076.1 1615909 D 360910 CDS YP_786077.1 187478053 6265472 1617393..1617962 1 NC_010645.1 hypothetical protein 1617962 6265472 BAV1553 Bordetella avium 197N hypothetical protein YP_786077.1 1617393 D 360910 CDS YP_786078.1 187478054 6265473 complement(1617967..1618407) 1 NC_010645.1 hypothetical protein 1618407 6265473 BAV1554 Bordetella avium 197N hypothetical protein YP_786078.1 1617967 R 360910 CDS YP_786079.1 187478055 6265474 complement(1618418..1619254) 1 NC_010645.1 hypothetical protein 1619254 6265474 BAV1555 Bordetella avium 197N hypothetical protein YP_786079.1 1618418 R 360910 CDS YP_786080.1 187478056 6265475 complement(1619346..1619933) 1 NC_010645.1 hypothetical protein 1619933 6265475 BAV1556 Bordetella avium 197N hypothetical protein YP_786080.1 1619346 R 360910 CDS YP_786081.1 187478057 6265476 complement(1619930..1620430) 1 NC_010645.1 hypothetical protein 1620430 6265476 BAV1557 Bordetella avium 197N hypothetical protein YP_786081.1 1619930 R 360910 CDS YP_786082.1 187478058 6265477 complement(1620430..1621734) 1 NC_010645.1 acyl coenzyme A thioester hydrolase 1621734 6265477 BAV1558 Bordetella avium 197N acyl coenzyme A thioester hydrolase YP_786082.1 1620430 R 360910 CDS YP_786083.1 187478059 6265478 complement(1621734..1623305) 1 NC_010645.1 ABC transporter substrate binding protein 1623305 6265478 BAV1559 Bordetella avium 197N ABC transporter substrate binding protein YP_786083.1 1621734 R 360910 CDS YP_786084.1 187478060 6265479 complement(1623339..1624346) 1 NC_010645.1 ABC transporter ATP-binding protein 1624346 6265479 BAV1560 Bordetella avium 197N ABC transporter ATP-binding protein YP_786084.1 1623339 R 360910 CDS YP_786085.1 187478061 6265480 complement(1624343..1625347) 1 NC_010645.1 ABC transporter ATP-binding protein 1625347 6265480 BAV1561 Bordetella avium 197N ABC transporter ATP-binding protein YP_786085.1 1624343 R 360910 CDS YP_786086.1 187478062 6265481 complement(1625344..1626249) 1 NC_010645.1 ABC transporter permease 1626249 6265481 BAV1562 Bordetella avium 197N ABC transporter permease YP_786086.1 1625344 R 360910 CDS YP_786087.1 187478063 6265482 complement(1626246..1627220) 1 NC_010645.1 ABC transporter permease 1627220 6265482 BAV1563 Bordetella avium 197N ABC transporter permease YP_786087.1 1626246 R 360910 CDS YP_786088.1 187478064 6265483 complement(1627217..1628674) 1 NC_010645.1 Also weakly similar to Escherichia coli L-lysine 6-monooxygenase iucD SWALL:IUCD_ECOLI (SWALL:P11295) (425 aa) fasta scores: E(): 0.19, 24.13 38d in 290 aa; monooxygenase 1628674 6265483 BAV1564 Bordetella avium 197N monooxygenase YP_786088.1 1627217 R 360910 CDS YP_786089.1 187478065 6265484 complement(1628685..1629635) 1 NC_010645.1 LysR family transcriptional regulator 1629635 6265484 BAV1565 Bordetella avium 197N LysR family transcriptional regulator YP_786089.1 1628685 R 360910 CDS YP_786090.1 187478066 6265485 complement(1629874..1630425) 1 NC_010645.1 hypothetical protein 1630425 6265485 BAV1566 Bordetella avium 197N hypothetical protein YP_786090.1 1629874 R 360910 CDS YP_786091.1 187478067 6265486 1630645..1632105 1 NC_010645.1 inosine-5'-monophosphate dehydrogenase 1632105 guaB 6265486 guaB Bordetella avium 197N inosine-5'-monophosphate dehydrogenase YP_786091.1 1630645 D 360910 CDS YP_786092.1 187478068 6267139 1632200..1633792 1 NC_010645.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1633792 guaA 6267139 guaA Bordetella avium 197N GMP synthase YP_786092.1 1632200 D 360910 CDS YP_786093.1 187478069 6265487 complement(1635075..1638548) 1 NC_010645.1 autotransporter 1638548 6265487 BAV1572 Bordetella avium 197N autotransporter YP_786093.1 1635075 R 360910 CDS YP_786094.1 187478070 6265488 <1639738..1640970 1 NC_010645.1 chromate transporter 1640970 6265488 BAV1573 Bordetella avium 197N chromate transporter YP_786094.1 <1639738 D 360910 CDS YP_786095.1 187478071 6265489 complement(1641103..1641678) 1 NC_010645.1 membrane protein 1641678 6265489 BAV1574 Bordetella avium 197N membrane protein YP_786095.1 1641103 R 360910 CDS YP_786096.1 187478072 6265490 complement(1641949..1643178) 1 NC_010645.1 Similar over its N-terminal region to Hydrogenophaga pseudoflava carbon monoxide dehydrogenase small chain cutS SWALL:DCMS_HYDPS (SWALL:P19915) (163 aa) fasta scores: E(): 3.5e-22, 46.52 38d in 144 aa; iron-sulfur binding carbon monoxide dehydrogenase 1643178 cutS 6265490 cutS Bordetella avium 197N iron-sulfur binding carbon monoxide dehydrogenase YP_786096.1 1641949 R 360910 CDS YP_786097.1 187478073 6266825 complement(1643175..>1644041) 1 NC_010645.1 carbon monoxide dehydrogenase medium chain >1644041 cutM 6266825 cutM Bordetella avium 197N carbon monoxide dehydrogenase medium chain YP_786097.1 1643175 R 360910 CDS YP_786098.1 187478074 6266824 complement(1644038..1646467) 1 NC_010645.1 carbon monoxide dehydrogenase large chain 1646467 cutL 6266824 cutL Bordetella avium 197N carbon monoxide dehydrogenase large chain YP_786098.1 1644038 R 360910 CDS YP_786099.1 187478075 6266822 complement(1646635..1648089) 1 NC_010645.1 C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter, permease 1648089 6266822 BAV1578 Bordetella avium 197N C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter, permease YP_786099.1 1646635 R 360910 CDS YP_786100.1 187478076 6265491 complement(1648127..1648708) 1 NC_010645.1 C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter, permease 1648708 6265491 BAV1579 Bordetella avium 197N C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter, permease YP_786100.1 1648127 R 360910 CDS YP_786101.1 187478077 6265492 complement(1648775..1649779) 1 NC_010645.1 C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter,C4-dicarboxylate-binding component 1649779 6265492 BAV1580 Bordetella avium 197N C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter,C4-dicarboxylate-binding component YP_786101.1 1648775 R 360910 CDS YP_786102.1 187478078 6265493 1650180..1650488 1 NC_010645.1 dioxygenase system, ferredoxin component 1650488 6265493 BAV1581 Bordetella avium 197N dioxygenase system, ferredoxin component YP_786102.1 1650180 D 360910 CDS YP_786103.1 187478079 6265494 1650485..1651822 1 NC_010645.1 dioxygenase system, reductase component 1651822 6265494 BAV1582 Bordetella avium 197N dioxygenase system, reductase component YP_786103.1 1650485 D 360910 CDS YP_786104.1 187478080 6265495 1651862..1653151 1 NC_010645.1 dioxygenase system subunit alpha 1653151 6265495 BAV1583 Bordetella avium 197N dioxygenase system subunit alpha YP_786104.1 1651862 D 360910 CDS YP_786105.1 187478081 6265496 1653201..1653725 1 NC_010645.1 dioxygenase system subunit beta 1653725 6265496 BAV1584 Bordetella avium 197N dioxygenase system subunit beta YP_786105.1 1653201 D 360910 CDS YP_786106.1 187478082 6265497 complement(1653815..1654369) 1 NC_010645.1 MarR family transcriptional regulator 1654369 6265497 BAV1585 Bordetella avium 197N MarR family transcriptional regulator YP_786106.1 1653815 R 360910 CDS YP_786107.1 187478083 6265498 1655412..1657022 1 NC_010645.1 transporter 1657022 6265498 BAV1586 Bordetella avium 197N transporter YP_786107.1 1655412 D 360910 CDS YP_786108.1 187478084 6265499 1657084..1658109 1 NC_010645.1 hypothetical protein 1658109 6265499 BAV1587 Bordetella avium 197N hypothetical protein YP_786108.1 1657084 D 360910 CDS YP_786109.1 187478085 6265500 complement(1658321..1659358) 1 NC_010645.1 MerR family transcriptional regulator 1659358 6265500 BAV1588 Bordetella avium 197N MerR family transcriptional regulator YP_786109.1 1658321 R 360910 CDS YP_786110.1 187478086 6265501 1659454..1659828 1 NC_010645.1 hypothetical protein 1659828 6265501 BAV1589 Bordetella avium 197N hypothetical protein YP_786110.1 1659454 D 360910 CDS YP_786111.1 187478087 6265502 <1659926..1661542 1 NC_010645.1 DNA photolyase 1661542 6265502 BAV1590 Bordetella avium 197N DNA photolyase YP_786111.1 <1659926 D 360910 CDS YP_786112.1 187478088 6265503 1661542..1662765 1 NC_010645.1 deoxyribodipyrimidine photo-lyase 1662765 6265503 BAV1591 Bordetella avium 197N deoxyribodipyrimidine photo-lyase YP_786112.1 1661542 D 360910 CDS YP_786113.1 187478089 6265504 <1662762..1663667 1 NC_010645.1 excinuclease 1663667 cho 6265504 cho Bordetella avium 197N excinuclease YP_786113.1 <1662762 D 360910 CDS YP_786114.1 187478090 6266786 complement(1663664..1664170) 1 NC_010645.1 flavin-dependent reductase 1664170 6266786 BAV1593 Bordetella avium 197N flavin-dependent reductase YP_786114.1 1663664 R 360910 CDS YP_786115.1 187478091 6265505 complement(1664351..1665379) 1 NC_010645.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 1665379 metE 6265505 metE Bordetella avium 197N 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase YP_786115.1 1664351 R 360910 CDS YP_786116.1 187478092 6267335 complement(1665403..1666386) 1 NC_010645.1 hypothetical protein 1666386 6267335 BAV1595 Bordetella avium 197N hypothetical protein YP_786116.1 1665403 R 360910 CDS YP_786117.1 187478093 6265506 complement(1666748..>1667119) 1 NC_010645.1 Partial CDS. Similar to C-terminal regions of two Bordetella autotransporters; autotransporter (partial) >1667119 6265506 BAV1596 Bordetella avium 197N autotransporter (partial) YP_786117.1 1666748 R 360910 CDS YP_786118.1 187478094 6265507 complement(1667210..1667734) 1 NC_010645.1 acetyltransferase 1667734 6265507 BAV1597 Bordetella avium 197N acetyltransferase YP_786118.1 1667210 R 360910 CDS YP_786119.1 187478095 6265508 complement(1668011..1668742) 1 NC_010645.1 GTP cyclohydrolase 1668742 folE 6265508 folE Bordetella avium 197N GTP cyclohydrolase YP_786119.1 1668011 R 360910 CDS YP_786120.1 187478096 6267027 complement(1668781..>1669728) 1 NC_010645.1 transcriptional regulator >1669728 6267027 BAV1599 Bordetella avium 197N transcriptional regulator YP_786120.1 1668781 R 360910 CDS YP_786121.1 187478097 6265509 1670122..1670949 1 NC_010645.1 hypothetical protein 1670949 6265509 BAV1600 Bordetella avium 197N hypothetical protein YP_786121.1 1670122 D 360910 CDS YP_786122.1 187478098 6265510 1670978..1671868 1 NC_010645.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase 1671868 pdxK 6265510 pdxK Bordetella avium 197N pyridoxal kinase YP_786122.1 1670978 D 360910 CDS YP_786123.1 187478099 6267498 complement(1671879..1673195) 1 NC_010645.1 GntR family transcriptional regulator 1673195 6267498 BAV1602 Bordetella avium 197N GntR family transcriptional regulator YP_786123.1 1671879 R 360910 CDS YP_786124.1 187478100 6265511 1674082..1678728 1 NC_010645.1 hypothetical protein 1678728 6265511 BAV1604 Bordetella avium 197N hypothetical protein YP_786124.1 1674082 D 360910 CDS YP_786125.1 187478101 6265512 complement(1678809..1679507) 1 NC_010645.1 membrane protein 1679507 6265512 BAV1605 Bordetella avium 197N membrane protein YP_786125.1 1678809 R 360910 CDS YP_786126.1 187478102 6265513 complement(1679708..1680574) 1 NC_010645.1 carboxylesterase 1680574 6265513 BAV1606 Bordetella avium 197N carboxylesterase YP_786126.1 1679708 R 360910 CDS YP_786127.1 187478103 6265514 complement(1680571..1680987) 1 NC_010645.1 phage excisionase 1680987 6265514 BAV1607 Bordetella avium 197N phage excisionase YP_786127.1 1680571 R 360910 CDS YP_786128.1 187478104 6265515 complement(1681177..1682343) 1 NC_010645.1 sugar efflux transporter 1682343 6265515 BAV1608 Bordetella avium 197N sugar efflux transporter YP_786128.1 1681177 R 360910 CDS YP_786129.1 187478105 6265516 complement(1682413..1682781) 1 NC_010645.1 ArsR family transcriptional regulator 1682781 6265516 BAV1609 Bordetella avium 197N ArsR family transcriptional regulator YP_786129.1 1682413 R 360910 CDS YP_786130.1 187478106 6265517 1683081..1684577 1 NC_010645.1 lysine-specific permease 1684577 lysP 6265517 lysP Bordetella avium 197N lysine-specific permease YP_786130.1 1683081 D 360910 CDS YP_786131.1 187478107 6267319 1684840..1686051 1 NC_010645.1 transporter 1686051 6267319 BAV1611 Bordetella avium 197N transporter YP_786131.1 1684840 D 360910 CDS YP_786132.1 187478108 6265518 1686561..1687295 1 NC_010645.1 hypothetical protein 1687295 6265518 BAV1612 Bordetella avium 197N hypothetical protein YP_786132.1 1686561 D 360910 CDS YP_786133.1 187478109 6265519 complement(1687483..1688007) 1 NC_010645.1 outside the bordetellae; hypothetical protein 1688007 6265519 BAV1613 Bordetella avium 197N hypothetical protein YP_786133.1 1687483 R 360910 CDS YP_786134.1 187478110 6265520 complement(1688105..>1689259) 1 NC_010645.1 transporter >1689259 6265520 BAV1614 Bordetella avium 197N transporter YP_786134.1 1688105 R 360910 CDS YP_786135.1 187478111 6265521 1689388..1689846 1 NC_010645.1 acetyltransferase 1689846 6265521 BAV1615 Bordetella avium 197N acetyltransferase YP_786135.1 1689388 D 360910 CDS YP_786136.1 187478112 6265522 complement(1689882..1690670) 1 NC_010645.1 hydratase 1690670 6265522 BAV1616 Bordetella avium 197N hydratase YP_786136.1 1689882 R 360910 CDS YP_786137.1 187478113 6265523 complement(1690749..>1690862) 1 NC_010645.1 Partial CDS. Similar to the N-terminus of several dehydrogenases; dehydrogenase (fragment) >1690862 6265523 BAV1617 Bordetella avium 197N dehydrogenase (fragment) YP_786137.1 1690749 R 360910 CDS YP_786138.1 187478114 6265524 1691583..1692434 1 NC_010645.1 hypothetical protein 1692434 6265524 BAV1618 Bordetella avium 197N hypothetical protein YP_786138.1 1691583 D 360910 CDS YP_786139.1 187478115 6265525 complement(1692431..1692760) 1 NC_010645.1 lipoprotein 1692760 6265525 BAV1619 Bordetella avium 197N lipoprotein YP_786139.1 1692431 R 360910 CDS YP_786140.1 187478116 6265526 complement(1692824..1693924) 1 NC_010645.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1693924 aroG1 6265526 aroG1 Bordetella avium 197N phospho-2-dehydro-3-deoxyheptonate aldolase YP_786140.1 1692824 R 360910 CDS YP_786141.1 187478117 6266658 complement(1693917..1694144) 1 NC_010645.1 hypothetical protein 1694144 6266658 BAV1621 Bordetella avium 197N hypothetical protein YP_786141.1 1693917 R 360910 CDS YP_786142.1 187478118 6265527 complement(1694172..1695530) 1 NC_010645.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 1695530 gor 6265527 gor Bordetella avium 197N glutathione reductase YP_786142.1 1694172 R 360910 CDS YP_786143.1 187478119 6267108 complement(1695647..1697107) 1 NC_010645.1 GntR family transcriptional regulator 1697107 6267108 BAV1623 Bordetella avium 197N GntR family transcriptional regulator YP_786143.1 1695647 R 360910 CDS YP_786144.1 187478120 6265528 1697224..1697937 1 NC_010645.1 acetyltransferase 1697937 6265528 BAV1624 Bordetella avium 197N acetyltransferase YP_786144.1 1697224 D 360910 CDS YP_786145.1 187478121 6265529 complement(1697934..1698269) 1 NC_010645.1 thioredoxin 1698269 6265529 BAV1625 Bordetella avium 197N thioredoxin YP_786145.1 1697934 R 360910 CDS YP_786146.1 187478122 6265530 1698535..1700400 1 NC_010645.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 1700400 pckG 6265530 pckG Bordetella avium 197N phosphoenolpyruvate carboxykinase YP_786146.1 1698535 D 360910 CDS YP_786147.1 187478123 6267489 1700397..1701002 1 NC_010645.1 hypothetical protein 1701002 6267489 BAV1627 Bordetella avium 197N hypothetical protein YP_786147.1 1700397 D 360910 CDS YP_786148.1 187478124 6265531 <1700999..1701802 1 NC_010645.1 membrane protein 1701802 6265531 BAV1628 Bordetella avium 197N membrane protein YP_786148.1 <1700999 D 360910 CDS YP_786149.1 187478125 6265532 1701792..1702298 1 NC_010645.1 hypothetical protein 1702298 6265532 BAV1629 Bordetella avium 197N hypothetical protein YP_786149.1 1701792 D 360910 CDS YP_786150.1 187478126 6265533 1702466..1703143 1 NC_010645.1 hypothetical protein 1703143 6265533 BAV1630 Bordetella avium 197N hypothetical protein YP_786150.1 1702466 D 360910 CDS YP_786151.1 187478127 6267832 complement(1703648..1704433) 1 NC_010645.1 exodeoxyribonuclease III 1704433 xthA 6267832 xthA Bordetella avium 197N exodeoxyribonuclease III YP_786151.1 1703648 R 360910 CDS YP_786152.1 187478128 6267947 complement(1704821..1707082) 1 NC_010645.1 cadmium-transporting ATPase 1707082 cadA 6267947 cadA Bordetella avium 197N cadmium-transporting ATPase YP_786152.1 1704821 R 360910 CDS YP_786153.1 187478129 6266748 1707187..1707621 1 NC_010645.1 MerR family transcriptional regulator 1707621 cadR 6266748 cadR Bordetella avium 197N MerR family transcriptional regulator YP_786153.1 1707187 D 360910 CDS YP_786154.1 187478130 6266749 1707752..1708339 1 NC_010645.1 nitroreductase 1708339 6266749 BAV1634 Bordetella avium 197N nitroreductase YP_786154.1 1707752 D 360910 CDS YP_786155.1 187478131 6265535 complement(1708402..1709814) 1 NC_010645.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1709814 argH 6265535 argH Bordetella avium 197N argininosuccinate lyase YP_786155.1 1708402 R 360910 CDS YP_786156.1 187478132 6266649 1709921..1711240 1 NC_010645.1 mechanosensitive ion channel forming protein 1711240 6266649 BAV1636 Bordetella avium 197N mechanosensitive ion channel forming protein YP_786156.1 1709921 D 360910 CDS YP_786157.1 187478133 6265536 1711277..1712905 1 NC_010645.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1712905 nadE 6265536 nadE Bordetella avium 197N NAD synthetase YP_786157.1 1711277 D 360910 CDS YP_786158.1 187478134 6267411 <1712941..1713279 1 NC_010645.1 nitrogen regulatory protein P-II 1713279 glnB 6267411 glnB Bordetella avium 197N nitrogen regulatory protein P-II YP_786158.1 <1712941 D 360910 CDS YP_786159.1 187478135 6265537 complement(1716590..>1719544) 1 NC_010645.1 ; Also similar to the adjacent pseudogene, BAV1640,(~50 identity).; autotransporter serine protease >1719544 sphB1 6265537 sphB1 Bordetella avium 197N autotransporter serine protease YP_786159.1 1716590 R 360910 CDS YP_786160.1 187478136 6267766 complement(1719900..1720814) 1 NC_010645.1 LysR family transcriptional regulator 1720814 6267766 BAV1642 Bordetella avium 197N LysR family transcriptional regulator YP_786160.1 1719900 R 360910 CDS YP_786161.1 187478137 6265539 1720934..1722562 1 NC_010645.1 gamma-glutamyltranspeptidase 1722562 ggt 6265539 ggt Bordetella avium 197N gamma-glutamyltranspeptidase YP_786161.1 1720934 D 360910 CDS YP_786162.1 187478138 6267066 1722596..1724119 1 NC_010645.1 ABC transporter substrate binding protein 1724119 6267066 BAV1644 Bordetella avium 197N ABC transporter substrate binding protein YP_786162.1 1722596 D 360910 CDS YP_786163.1 187478139 6265540 1724189..1725133 1 NC_010645.1 ABC transporter permease 1725133 6265540 BAV1645 Bordetella avium 197N ABC transporter permease YP_786163.1 1724189 D 360910 CDS YP_786164.1 187478140 6265541 1725130..1725999 1 NC_010645.1 ABC transporter permease 1725999 6265541 BAV1646 Bordetella avium 197N ABC transporter permease YP_786164.1 1725130 D 360910 CDS YP_786165.1 187478141 6265542 1726018..1727865 1 NC_010645.1 ABC transporter ATP-binding protein 1727865 6265542 BAV1647 Bordetella avium 197N ABC transporter ATP-binding protein YP_786165.1 1726018 D 360910 CDS YP_786166.1 187478142 6265543 complement(1727990..>1728673) 1 NC_010645.1 LysE family efflux protein >1728673 6265543 BAV1648 Bordetella avium 197N LysE family efflux protein YP_786166.1 1727990 R 360910 CDS YP_786167.1 187478143 6265544 1728714..1729262 1 NC_010645.1 hypothetical protein 1729262 6265544 BAV1649 Bordetella avium 197N hypothetical protein YP_786167.1 1728714 D 360910 CDS YP_786168.1 187478144 6265545 complement(1729425..1730021) 1 NC_010645.1 lyase 1730021 6265545 BAV1650 Bordetella avium 197N lyase YP_786168.1 1729425 R 360910 CDS YP_786169.1 187478145 6265546 1730072..1730803 1 NC_010645.1 ribosomal large subunit pseudouridine synthase F 1730803 rluF 6265546 rluF Bordetella avium 197N ribosomal large subunit pseudouridine synthase F YP_786169.1 1730072 D 360910 CDS YP_786170.1 187478146 6267667 complement(1730842..1731753) 1 NC_010645.1 LysR family transcriptional regulator 1731753 6267667 BAV1652 Bordetella avium 197N LysR family transcriptional regulator YP_786170.1 1730842 R 360910 CDS YP_786171.1 187478147 6265547 1731957..1733147 1 NC_010645.1 acriflavine resistance protein A 1733147 acrA 6265547 acrA Bordetella avium 197N acriflavine resistance protein A YP_786171.1 1731957 D 360910 CDS YP_786172.1 187478148 6266591 1733160..1736327 1 NC_010645.1 acriflavine resistance protein B 1736327 acrB 6266591 acrB Bordetella avium 197N acriflavine resistance protein B YP_786172.1 1733160 D 360910 CDS YP_786173.1 187478149 6266592 1736327..1737790 1 NC_010645.1 multidrug efflux system outer membrane protein 1737790 6266592 BAV1655 Bordetella avium 197N multidrug efflux system outer membrane protein YP_786173.1 1736327 D 360910 CDS YP_786174.1 187478150 6265548 1737980..1738681 1 NC_010645.1 adhesin/virulence factor 1738681 6265548 BAV1656 Bordetella avium 197N adhesin/virulence factor YP_786174.1 1737980 D 360910 CDS YP_786175.1 187478151 6265549 complement(1738686..1738997) 1 NC_010645.1 membrane protein 1738997 6265549 BAV1657 Bordetella avium 197N membrane protein YP_786175.1 1738686 R 360910 CDS YP_786176.1 187478152 6265550 complement(1739034..1739636) 1 NC_010645.1 electron transport protein 1739636 6265550 BAV1658 Bordetella avium 197N electron transport protein YP_786176.1 1739034 R 360910 CDS YP_786177.1 187478153 6265551 complement(1739971..1742025) 1 NC_010645.1 oligopeptidase A 1742025 opdA 6265551 opdA Bordetella avium 197N oligopeptidase A YP_786177.1 1739971 R 360910 CDS YP_786178.1 187478154 6267462 complement(1742164..1743018) 1 NC_010645.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1743018 folD 6267462 folD Bordetella avium 197N bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_786178.1 1742164 R 360910 CDS YP_786179.1 187478155 6267026 complement(1743015..1743641) 1 NC_010645.1 two-component response regulator 1743641 6267026 BAV1661 Bordetella avium 197N two-component response regulator YP_786179.1 1743015 R 360910 CDS YP_786180.1 187478156 6265552 complement(1743638..1745392) 1 NC_010645.1 two-component sensor kinase 1745392 6265552 BAV1662 Bordetella avium 197N two-component sensor kinase YP_786180.1 1743638 R 360910 CDS YP_786181.1 187478157 6265553 1745914..1748619 1 NC_010645.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 1748619 aceE 6265553 aceE Bordetella avium 197N pyruvate dehydrogenase subunit E1 YP_786181.1 1745914 D 360910 CDS YP_786182.1 187478158 6266580 1748637..1750247 1 NC_010645.1 dihydrolipoamide acetyltransferase 1750247 aceF 6266580 aceF Bordetella avium 197N dihydrolipoamide acetyltransferase YP_786182.1 1748637 D 360910 CDS YP_786183.1 187478159 6266581 1750263..1752035 1 NC_010645.1 dihydrolipoamide dehydrogenase 1752035 lpd 6266581 lpd Bordetella avium 197N dihydrolipoamide dehydrogenase YP_786183.1 1750263 D 360910 CDS YP_786184.1 187478160 6267306 1752193..1753557 1 NC_010645.1 hypothetical protein 1753557 6267306 BAV1666 Bordetella avium 197N hypothetical protein YP_786184.1 1752193 D 360910 CDS YP_786185.1 187478161 6265554 <1753590..1753787 1 NC_010645.1 hypothetical protein 1753787 6265554 BAV1667 Bordetella avium 197N hypothetical protein YP_786185.1 <1753590 D 360910 CDS YP_786186.1 187478162 6265555 complement(1753980..1755113) 1 NC_010645.1 flagellin 1755113 fliC 6265555 fliC Bordetella avium 197N flagellin YP_786186.1 1753980 R 360910 CDS YP_786187.1 187478163 6267014 complement(1755295..1756029) 1 NC_010645.1 RNA polymerase sigma factor for flagellar operon 1756029 flaD 6267014 flaD Bordetella avium 197N RNA polymerase sigma factor for flagellar operon YP_786187.1 1755295 R 360910 CDS YP_786188.1 187478164 6266985 1756437..1756760 1 NC_010645.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 1756760 flbB 6266985 flbB Bordetella avium 197N transcriptional activator FlhD YP_786188.1 1756437 D 360910 CDS YP_786189.1 187478165 6267007 1756789..1757361 1 NC_010645.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 1757361 flaI 6267007 flaI Bordetella avium 197N transcriptional activator FlhC YP_786189.1 1756789 D 360910 CDS YP_786190.1 187478166 6266988 1757514..1758389 1 NC_010645.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 1758389 motA 6266988 motA Bordetella avium 197N flagellar motor protein MotA YP_786190.1 1757514 D 360910 CDS YP_786191.1 187478167 6267377 1758408..1759382 1 NC_010645.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 1759382 motB 6267377 motB Bordetella avium 197N flagellar motor protein MotB YP_786191.1 1758408 D 360910 CDS YP_786192.1 187478168 6267378 1759357..1759737 1 NC_010645.1 chemotaxis two-component response regulator 1759737 cheY 6267378 cheY Bordetella avium 197N chemotaxis two-component response regulator YP_786192.1 1759357 D 360910 CDS YP_786193.1 187478169 6266781 1759770..1761788 1 NC_010645.1 chemotaxis two-cpmponent sensor kinase 1761788 cheA 6266781 cheA Bordetella avium 197N chemotaxis two-cpmponent sensor kinase YP_786193.1 1759770 D 360910 CDS YP_786194.1 187478170 6266772 1761802..1762305 1 NC_010645.1 chemotaxis protein 1762305 cheW 6266772 cheW Bordetella avium 197N chemotaxis protein YP_786194.1 1761802 D 360910 CDS YP_786195.1 187478171 6266780 1762363..1764048 1 NC_010645.1 methyl-accepting chemotaxis protein 1764048 6266780 BAV1677 Bordetella avium 197N methyl-accepting chemotaxis protein YP_786195.1 1762363 D 360910 CDS YP_786196.1 187478172 6265556 <1764056..1764901 1 NC_010645.1 chemotaxis protein methyltransferase 1764901 cheR 6265556 cheR Bordetella avium 197N chemotaxis protein methyltransferase YP_786196.1 <1764056 D 360910 CDS YP_786197.1 187478173 6266778 1764918..1765973 1 NC_010645.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1765973 cheB 6266778 cheB Bordetella avium 197N chemotaxis-specific methylesterase YP_786197.1 1764918 D 360910 CDS YP_786198.1 187478174 6266774 1766018..1766407 1 NC_010645.1 chemotaxis response regulator 1766407 cheY 6266774 cheY Bordetella avium 197N chemotaxis response regulator YP_786198.1 1766018 D 360910 CDS YP_786199.1 187478175 6266782 1766416..1767042 1 NC_010645.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 1767042 cheZ 6266782 cheZ Bordetella avium 197N chemotaxis regulator CheZ YP_786199.1 1766416 D 360910 CDS YP_786200.1 187478176 6266783 1767200..1768342 1 NC_010645.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1768342 flhB 6266783 flhB Bordetella avium 197N flagellar biosynthesis protein FlhB YP_786200.1 1767200 D 360910 CDS YP_786201.1 187478177 6267012 1768346..1770463 1 NC_010645.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1770463 flhA 6267012 flhA Bordetella avium 197N flagellar biosynthesis protein FlhA YP_786201.1 1768346 D 360910 CDS YP_786202.1 187478178 6267011 <1770460..1772916 1 NC_010645.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1772916 flhF 6267011 flhF Bordetella avium 197N flagellar biosynthesis regulator FlhF YP_786202.1 <1770460 D 360910 CDS YP_786203.1 187478179 6267013 complement(1772960..>1773430) 1 NC_010645.1 flagella biosynthesis protein >1773430 flgN 6267013 flgN Bordetella avium 197N flagella biosynthesis protein YP_786203.1 1772960 R 360910 CDS YP_786204.1 187478180 6267010 complement(1773427..1773714) 1 NC_010645.1 negative regulator of flagellin synthesis 1773714 flgM 6267010 flgM Bordetella avium 197N negative regulator of flagellin synthesis YP_786204.1 1773427 R 360910 CDS YP_786205.1 187478181 6267009 complement(1773841..1774590) 1 NC_010645.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1774590 flgA 6267009 flgA Bordetella avium 197N flagellar basal body P-ring biosynthesis protein FlgA YP_786205.1 1773841 R 360910 CDS YP_786206.1 187478182 6267008 1774709..1775116 1 NC_010645.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1775116 flgB 6267008 flgB Bordetella avium 197N flagellar basal body rod protein FlgB YP_786206.1 1774709 D 360910 CDS YP_786207.1 187478183 6267006 1775137..1775556 1 NC_010645.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1775556 flgC 6267006 flgC Bordetella avium 197N flagellar basal body rod protein FlgC YP_786207.1 1775137 D 360910 CDS YP_786208.1 187478184 6267002 1775568..1776260 1 NC_010645.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 1776260 flgD 6267002 flgD Bordetella avium 197N flagellar basal body rod modification protein YP_786208.1 1775568 D 360910 CDS YP_786209.1 187478185 6267001 1776341..1777561 1 NC_010645.1 flagellar hook protein 1777561 flaK 6267001 flaK Bordetella avium 197N flagellar hook protein YP_786209.1 1776341 D 360910 CDS YP_786210.1 187478186 6266989 1777578..1778345 1 NC_010645.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1778345 flgF 6266989 flgF Bordetella avium 197N flagellar basal body rod protein FlgF YP_786210.1 1777578 D 360910 CDS YP_786211.1 187478187 6267003 1778392..1779177 1 NC_010645.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1779177 flgG 6267003 flgG Bordetella avium 197N flagellar basal body rod protein FlgG YP_786211.1 1778392 D 360910 CDS YP_786212.1 187478188 6266990 <1779174..1779863 1 NC_010645.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 1779863 flgH 6266990 flgH Bordetella avium 197N flagellar basal body L-ring protein YP_786212.1 <1779174 D 360910 CDS YP_786213.1 187478189 6267004 1779868..1780998 1 NC_010645.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1780998 flgI 6267004 flgI Bordetella avium 197N flagellar basal body P-ring protein YP_786213.1 1779868 D 360910 CDS YP_786214.1 187478190 6266991 1780998..1781990 1 NC_010645.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1781990 flgJ 6266991 flgJ Bordetella avium 197N flagellar rod assembly protein/muramidase FlgJ YP_786214.1 1780998 D 360910 CDS YP_786215.1 187478191 6267005 1782066..1783718 1 NC_010645.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1783718 flgK 6267005 flgK Bordetella avium 197N flagellar hook-associated protein FlgK YP_786215.1 1782066 D 360910 CDS YP_786216.1 187478192 6266998 1783735..1784967 1 NC_010645.1 flagellar hook-associated protein 3 1784967 flaT 6266998 flaT Bordetella avium 197N flagellar hook-associated protein 3 YP_786216.1 1783735 D 360910 CDS YP_786217.1 187478193 6266999 1785048..1786871 1 NC_010645.1 methyl-accepting chemotaxis protein 1786871 6266999 BAV1699 Bordetella avium 197N methyl-accepting chemotaxis protein YP_786217.1 1785048 D 360910 CDS YP_786218.1 187478194 6265557 1786976..1788718 1 NC_010645.1 methyl-accepting chemotaxis protein 1788718 6265557 BAV1700 Bordetella avium 197N methyl-accepting chemotaxis protein YP_786218.1 1786976 D 360910 CDS YP_786219.1 187478195 6265558 1788750..1789214 1 NC_010645.1 No similarity to any protein in the database except for Bordetella bronchiseptica lipoprotein; lipoprotein 1789214 6265558 BAV1701 Bordetella avium 197N lipoprotein YP_786219.1 1788750 D 360910 CDS YP_786220.1 187478196 6265559 1789326..1791059 1 NC_010645.1 methyl-accepting chemotaxis protein 1791059 6265559 BAV1702 Bordetella avium 197N methyl-accepting chemotaxis protein YP_786220.1 1789326 D 360910 CDS YP_786221.1 187478197 6265560 <1791164..1792789 1 NC_010645.1 methyl-accepting chemotaxis protein 1792789 6265560 BAV1703 Bordetella avium 197N methyl-accepting chemotaxis protein YP_786221.1 <1791164 D 360910 CDS YP_786222.1 187478198 6265561 complement(1792916..>1793710) 1 NC_010645.1 flagellar biosynthetic protein >1793710 flaP 6265561 flaP Bordetella avium 197N flagellar biosynthetic protein YP_786222.1 1792916 R 360910 CDS YP_786223.1 187478199 6266995 complement(1793716..1793985) 1 NC_010645.1 flagellar biosynthetic protein FliQ 1793985 flaQ 6266995 flaQ Bordetella avium 197N flagellar biosynthetic protein FliQ YP_786223.1 1793716 R 360910 CDS YP_786224.1 187478200 6266996 complement(1794003..1794770) 1 NC_010645.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1794770 fliP 6266996 fliP Bordetella avium 197N flagellar biosynthesis protein FliP YP_786224.1 1794003 R 360910 CDS YP_786225.1 187478201 6266997 complement(1794780..1795094) 1 NC_010645.1 flagellar protein 1795094 flaP 6266997 flaP Bordetella avium 197N flagellar protein YP_786225.1 1794780 R 360910 CDS YP_786226.1 187478202 6266994 complement(1795101..1795619) 1 NC_010645.1 flagellar motor switch protein 1795619 flaN 6266994 flaN Bordetella avium 197N flagellar motor switch protein YP_786226.1 1795101 R 360910 CDS YP_786227.1 187478203 6266992 complement(1795612..1796616) 1 NC_010645.1 flagellar motor switch protein 1796616 CheC2 6266992 CheC2 Bordetella avium 197N flagellar motor switch protein YP_786227.1 1795612 R 360910 CDS YP_786228.1 187478204 6266776 complement(1796619..1797245) 1 NC_010645.1 flagellar protein 1797245 cheC1 6266776 cheC1 Bordetella avium 197N flagellar protein YP_786228.1 1796619 R 360910 CDS YP_786229.1 187478205 6266775 complement(1797385..1798716) 1 NC_010645.1 flagellar hook-length control protein 1798716 flaE 6266775 flaE Bordetella avium 197N flagellar hook-length control protein YP_786229.1 1797385 R 360910 CDS YP_786230.1 187478206 6266986 complement(1798733..>1799179) 1 NC_010645.1 flagellar protein >1799179 flaO 6266986 flaO Bordetella avium 197N flagellar protein YP_786230.1 1798733 R 360910 CDS YP_786231.1 187478207 6266993 complement(1799172..>1800611) 1 NC_010645.1 flagellum-specific ATP synthase >1800611 flaC 6266993 flaC Bordetella avium 197N flagellum-specific ATP synthase YP_786231.1 1799172 R 360910 CDS YP_786232.1 187478208 6266984 complement(1800608..1801342) 1 NC_010645.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1801342 fliH 6266984 fliH Bordetella avium 197N flagellar assembly protein H YP_786232.1 1800608 R 360910 CDS YP_786233.1 187478209 6267018 complement(1801335..1802348) 1 NC_010645.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1802348 fliG 6267018 fliG Bordetella avium 197N flagellar motor switch protein G YP_786233.1 1801335 R 360910 CDS YP_786234.1 187478210 6267017 complement(1802338..1803972) 1 NC_010645.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1803972 fliF 6267017 fliF Bordetella avium 197N flagellar MS-ring protein YP_786234.1 1802338 R 360910 CDS YP_786235.1 187478211 6267016 1804236..1804574 1 NC_010645.1 flagellar hook-basal body complex protein 1804574 fliE 6267016 fliE Bordetella avium 197N flagellar hook-basal body complex protein YP_786235.1 1804236 D 360910 CDS YP_786236.1 187478212 6267015 complement(1804582..1804983) 1 NC_010645.1 hypothetical protein 1804983 6267015 BAV1718 Bordetella avium 197N hypothetical protein YP_786236.1 1804582 R 360910 CDS YP_786237.1 187478213 6265562 complement(1804991..1805284) 1 NC_010645.1 flagellar biosynthesis protein 1805284 6265562 BAV1719 Bordetella avium 197N flagellar biosynthesis protein YP_786237.1 1804991 R 360910 CDS YP_786238.1 187478214 6265563 complement(1805293..1806582) 1 NC_010645.1 hypothetical protein 1806582 6265563 BAV1720 Bordetella avium 197N hypothetical protein YP_786238.1 1805293 R 360910 CDS YP_786239.1 187478215 6265564 complement(1806586..1806933) 1 NC_010645.1 flagellar protein 1806933 fliT 6265564 fliT Bordetella avium 197N flagellar protein YP_786239.1 1806586 R 360910 CDS YP_786240.1 187478216 6267020 complement(1806975..1807403) 1 NC_010645.1 flagellar protein 1807403 fliS 6267020 fliS Bordetella avium 197N flagellar protein YP_786240.1 1806975 R 360910 CDS YP_786241.1 187478217 6267019 complement(1807417..1808796) 1 NC_010645.1 flagellar hook-associated protein 2 1808796 flaV 6267019 flaV Bordetella avium 197N flagellar hook-associated protein 2 YP_786241.1 1807417 R 360910 CDS YP_786242.1 187478218 6267000 complement(1808930..1809310) 1 NC_010645.1 flagellar protein 1809310 flaG 6267000 flaG Bordetella avium 197N flagellar protein YP_786242.1 1808930 R 360910 CDS YP_786243.1 187478219 6266987 1809552..1810856 1 NC_010645.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase FolC 1810856 dedC 6266987 dedC Bordetella avium 197N bifunctional folylpolyglutamate synthase/dihydrofolate synthase FolC YP_786243.1 1809552 D 360910 CDS YP_786244.1 187478220 6266873 1810964..1811782 1 NC_010645.1 membrane protein 1811782 dedD 6266873 dedD Bordetella avium 197N membrane protein YP_786244.1 1810964 D 360910 CDS YP_786245.1 187478221 6266874 <1811779..1812267 1 NC_010645.1 colicin V production protein 1812267 cvpA 6266874 cvpA Bordetella avium 197N colicin V production protein YP_786245.1 <1811779 D 360910 CDS YP_786246.1 187478222 6266826 1812310..1813830 1 NC_010645.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1813830 purF 6266826 purF Bordetella avium 197N amidophosphoribosyltransferase YP_786246.1 1812310 D 360910 CDS YP_786247.1 187478223 6267598 complement(1813877..1815274) 1 NC_010645.1 hypothetical protein 1815274 6267598 BAV1729 Bordetella avium 197N hypothetical protein YP_786247.1 1813877 R 360910 CDS YP_786248.1 187478224 6265565 1815366..1816268 1 NC_010645.1 LysR family transcriptional regulator 1816268 6265565 BAV1730 Bordetella avium 197N LysR family transcriptional regulator YP_786248.1 1815366 D 360910 CDS YP_786249.1 187478225 6265566 complement(1816428..1816913) 1 NC_010645.1 disulfide bond formation protein B 1816913 dsbB 6265566 dsbB Bordetella avium 197N disulfide bond formation protein B YP_786249.1 1816428 R 360910 CDS YP_786250.1 187478226 6266904 complement(1817084..1819660) 1 NC_010645.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 1819660 glnD 6266904 glnD Bordetella avium 197N PII uridylyl-transferase YP_786250.1 1817084 R 360910 CDS YP_786251.1 187478227 6267081 complement(1819685..1820506) 1 NC_010645.1 methionine aminopeptidase 1820506 map 6267081 map Bordetella avium 197N methionine aminopeptidase YP_786251.1 1819685 R 360910 CDS YP_786252.1 187478228 6267328 1821296..1822045 1 NC_010645.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1822045 rpsB 6267328 rpsB Bordetella avium 197N 30S ribosomal protein S2 YP_786252.1 1821296 D 360910 CDS YP_786253.1 187478229 6267711 1822197..1823075 1 NC_010645.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1823075 tsf 6267711 tsf Bordetella avium 197N elongation factor Ts YP_786253.1 1822197 D 360910 CDS YP_786254.1 187478230 6267902 1823270..1823932 1 NC_010645.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1823932 pyrH 6267902 pyrH Bordetella avium 197N uridylate kinase YP_786254.1 1823270 D 360910 CDS YP_786255.1 187478231 6267615 1823945..1824505 1 NC_010645.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1824505 frr 6267615 frr Bordetella avium 197N ribosome recycling factor YP_786255.1 1823945 D 360910 CDS YP_786256.1 187478232 6267032 1824708..1825460 1 NC_010645.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1825460 rth 6267032 rth Bordetella avium 197N undecaprenyl pyrophosphate synthase YP_786256.1 1824708 D 360910 CDS YP_786257.1 187478233 6267734 1825492..1826337 1 NC_010645.1 phosphatidate cytidylyltransferase 1826337 cdsA 6267734 cdsA Bordetella avium 197N phosphatidate cytidylyltransferase YP_786257.1 1825492 D 360910 CDS YP_786258.1 187478234 6266768 1826334..1827533 1 NC_010645.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1827533 dxr 6266768 dxr Bordetella avium 197N 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_786258.1 1826334 D 360910 CDS YP_786259.1 187478235 6266910 1827609..1828943 1 NC_010645.1 inner membrane protease 1828943 ecfE 6266910 ecfE Bordetella avium 197N inner membrane protease YP_786259.1 1827609 D 360910 CDS YP_786260.1 187478236 6266913 1828996..1831374 1 NC_010645.1 surface antigen 1831374 6266913 BAV1742 Bordetella avium 197N surface antigen YP_786260.1 1828996 D 360910 CDS YP_786261.1 187478237 6265567 1831559..1832107 1 NC_010645.1 outer membrane protein 1832107 ompH 6265567 ompH Bordetella avium 197N outer membrane protein YP_786261.1 1831559 D 360910 CDS YP_786262.1 187478238 6267460 1832114..1833199 1 NC_010645.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1833199 lpxD 6267460 lpxD Bordetella avium 197N UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_786262.1 1832114 D 360910 CDS YP_786263.1 187478239 6266980 1833280..1833735 1 NC_010645.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1833735 fabZ 6266980 fabZ Bordetella avium 197N (3R)-hydroxymyristoyl-ACP dehydratase YP_786263.1 1833280 D 360910 CDS YP_786264.1 187478240 6266949 1833736..1834530 1 NC_010645.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1834530 lpxA 6266949 lpxA Bordetella avium 197N UDP-N-acetylglucosamine acyltransferase YP_786264.1 1833736 D 360910 CDS YP_786265.1 187478241 6267311 1834527..1835714 1 NC_010645.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1835714 lpxB 6267311 lpxB Bordetella avium 197N lipid-A-disaccharide synthase YP_786265.1 1834527 D 360910 CDS YP_786266.1 187478242 6267312 1835701..1836309 1 NC_010645.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1836309 rnhB 6267312 rnhB Bordetella avium 197N ribonuclease HII YP_786266.1 1835701 D 360910 CDS YP_786267.1 187478243 6267669 1836306..1837079 1 NC_010645.1 RNA methyltransferase 1837079 6267669 BAV1749 Bordetella avium 197N RNA methyltransferase YP_786267.1 1836306 D 360910 CDS YP_786268.1 187478244 6265568 1837079..1837525 1 NC_010645.1 hypothetical protein 1837525 6265568 BAV1749A Bordetella avium 197N hypothetical protein YP_786268.1 1837079 D 360910 CDS YP_786269.1 187478245 6265569 complement(1837533..1838357) 1 NC_010645.1 hypothetical protein 1838357 6265569 BAV1750 Bordetella avium 197N hypothetical protein YP_786269.1 1837533 R 360910 CDS YP_786270.1 187478246 6265570 1838516..1840882 1 NC_010645.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1840882 ppsA 6265570 ppsA Bordetella avium 197N phosphoenolpyruvate synthase YP_786270.1 1838516 D 360910 CDS YP_786271.1 187478247 6267564 1841129..1841560 1 NC_010645.1 membrane protein 1841560 6267564 BAV1752 Bordetella avium 197N membrane protein YP_786271.1 1841129 D 360910 CDS YP_786272.1 187478248 6265571 1841594..1842520 1 NC_010645.1 membrane protein 1842520 6265571 BAV1753 Bordetella avium 197N membrane protein YP_786272.1 1841594 D 360910 CDS YP_786273.1 187478249 6265572 1842554..1843699 1 NC_010645.1 signaling protein 1843699 6265572 BAV1754 Bordetella avium 197N signaling protein YP_786273.1 1842554 D 360910 CDS YP_786274.1 187478250 6265573 complement(1843725..1844186) 1 NC_010645.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1844186 smpB 6265573 smpB Bordetella avium 197N SsrA-binding protein YP_786274.1 1843725 R 360910 CDS YP_786275.1 187478251 6267761 1844252..1844686 1 NC_010645.1 cyclase 1844686 6267761 BAV1756 Bordetella avium 197N cyclase YP_786275.1 1844252 D 360910 CDS YP_786276.1 187478252 6265574 1844676..1845008 1 NC_010645.1 hypothetical protein 1845008 6265574 BAV1757 Bordetella avium 197N hypothetical protein YP_786276.1 1844676 D 360910 CDS YP_786277.1 187478253 6265575 <1845201..1846355 1 NC_010645.1 acyl-CoA dehydrogenase 1846355 6265575 BAV1758 Bordetella avium 197N acyl-CoA dehydrogenase YP_786277.1 <1845201 D 360910 CDS YP_786278.1 187478254 6265576 1846352..1847524 1 NC_010645.1 enoly-CoA hydratase 1847524 6265576 BAV1759 Bordetella avium 197N enoly-CoA hydratase YP_786278.1 1846352 D 360910 CDS YP_786279.1 187478255 6265577 1847582..1848466 1 NC_010645.1 Also similar to BAV2903 (35.2 38d); 3-hydroxyisobutyrate dehydrogenase 1848466 mmsB 6265577 mmsB Bordetella avium 197N 3-hydroxyisobutyrate dehydrogenase YP_786279.1 1847582 D 360910 CDS YP_786280.1 187478256 6267363 1848535..1849224 1 NC_010645.1 membrane protein 1849224 6267363 BAV1761 Bordetella avium 197N membrane protein YP_786280.1 1848535 D 360910 CDS YP_786281.1 187478257 6265578 complement(1849237..1850196) 1 NC_010645.1 aminomethyl transferase 1850196 6265578 BAV1762 Bordetella avium 197N aminomethyl transferase YP_786281.1 1849237 R 360910 CDS YP_786282.1 187478258 6265579 1850325..1851344 1 NC_010645.1 hypothetical protein 1851344 6265579 BAV1763 Bordetella avium 197N hypothetical protein YP_786282.1 1850325 D 360910 CDS YP_786283.1 187478259 6265580 1851341..1851985 1 NC_010645.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1851985 tmk 6265580 tmk Bordetella avium 197N thymidylate kinase YP_786283.1 1851341 D 360910 CDS YP_786284.1 187478260 6267814 1851982..1853025 1 NC_010645.1 DNA polymerase III subunit delta' 1853025 holB 6267814 holB Bordetella avium 197N DNA polymerase III subunit delta' YP_786284.1 1851982 D 360910 CDS YP_786285.1 187478261 6267190 1853052..1853822 1 NC_010645.1 deoxyribonuclease 1853822 6267190 BAV1766 Bordetella avium 197N deoxyribonuclease YP_786285.1 1853052 D 360910 CDS YP_786286.1 187478262 6265581 1853864..1854664 1 NC_010645.1 hypothetical protein 1854664 6265581 BAV1767 Bordetella avium 197N hypothetical protein YP_786286.1 1853864 D 360910 CDS YP_786287.1 187478263 6265582 complement(1854985..1855410) 1 NC_010645.1 No similarity outside the bordetellae; hypothetical protein 1855410 6265582 BAV1769 Bordetella avium 197N hypothetical protein YP_786287.1 1854985 R 360910 CDS YP_786288.1 187478264 6265583 1857012..1857707 1 NC_010645.1 two-component response regulator of capsular synthesis 1857707 rcsB 6265583 rcsB Bordetella avium 197N two-component response regulator of capsular synthesis YP_786288.1 1857012 D 360910 CDS YP_786289.1 187478265 6267624 complement(1858090..1859301) 1 NC_010645.1 3-oxoacyl-[acyl-carrier-protein] synthase 1859301 fabF 6267624 fabF Bordetella avium 197N 3-oxoacyl-[acyl-carrier-protein] synthase YP_786289.1 1858090 R 360910 CDS YP_786290.1 187478266 6266945 complement(1859318..1859755) 1 NC_010645.1 hypothetical protein 1859755 6266945 BAV1772 Bordetella avium 197N hypothetical protein YP_786290.1 1859318 R 360910 CDS YP_786291.1 187478267 6265584 complement(1859858..1861048) 1 NC_010645.1 adhesin 1861048 6265584 BAV1773 Bordetella avium 197N adhesin YP_786291.1 1859858 R 360910 CDS YP_786292.1 187478268 6265585 complement(1861045..>1863567) 1 NC_010645.1 fimbrial usher >1863567 lpfC 6265585 lpfC Bordetella avium 197N fimbrial usher YP_786292.1 1861045 R 360910 CDS YP_786293.1 187478269 6267308 complement(1863564..1864343) 1 NC_010645.1 fimbrial chaperone 1864343 lpfB 6267308 lpfB Bordetella avium 197N fimbrial chaperone YP_786293.1 1863564 R 360910 CDS YP_786294.1 187478270 6267307 complement(1864365..1864901) 1 NC_010645.1 One of 11 fimbrial subunits; fimbrial subunit 1864901 6267307 BAV1776 Bordetella avium 197N fimbrial subunit YP_786294.1 1864365 R 360910 CDS YP_786295.1 187478271 6265586 complement(1865029..1865559) 1 NC_010645.1 One of 11 fimbrial subunits; fimbrial subunit 1865559 6265586 BAV1777 Bordetella avium 197N fimbrial subunit YP_786295.1 1865029 R 360910 CDS YP_786296.1 187478272 6265587 complement(1865598..1866005) 1 NC_010645.1 hypothetical protein 1866005 6265587 BAV1778 Bordetella avium 197N hypothetical protein YP_786296.1 1865598 R 360910 CDS YP_786297.1 187478273 6265588 complement(1866281..>1867618) 1 NC_010645.1 amino acid permease >1867618 6265588 BAV1779 Bordetella avium 197N amino acid permease YP_786297.1 1866281 R 360910 CDS YP_786298.1 187478274 6265589 complement(1867719..1871147) 1 NC_010645.1 two component sensor kinase for capsular biosynthesis 1871147 rcsC 6265589 rcsC Bordetella avium 197N two component sensor kinase for capsular biosynthesis YP_786298.1 1867719 R 360910 CDS YP_786299.1 187478275 6267625 complement(1871480..1872400) 1 NC_010645.1 LysR family transcriptional regulator 1872400 6267625 BAV1781 Bordetella avium 197N LysR family transcriptional regulator YP_786299.1 1871480 R 360910 CDS YP_786300.1 187478276 6265590 1872542..1873591 1 NC_010645.1 gentisate 1,2-dioxygenase 1873591 nagI 6265590 nagI Bordetella avium 197N gentisate 1,2-dioxygenase YP_786300.1 1872542 D 360910 CDS YP_786301.1 187478277 6267413 1873647..1874348 1 NC_010645.1 fumarylpyruvate hydrolase 1874348 nagK 6267413 nagK Bordetella avium 197N fumarylpyruvate hydrolase YP_786301.1 1873647 D 360910 CDS YP_786302.1 187478278 6267414 1874345..1874986 1 NC_010645.1 maleylpyruvate isomerase 1874986 nagL 6267414 nagL Bordetella avium 197N maleylpyruvate isomerase YP_786302.1 1874345 D 360910 CDS YP_786303.1 187478279 6267415 1875002..1875127 1 NC_010645.1 hypothetical protein 1875127 6267415 BAV1785 Bordetella avium 197N hypothetical protein YP_786303.1 1875002 D 360910 CDS YP_786304.1 187478280 6265591 1875120..1876100 1 NC_010645.1 hypothetical protein 1876100 nagM 6265591 nagM Bordetella avium 197N hypothetical protein YP_786304.1 1875120 D 360910 CDS YP_786305.1 187478281 6267416 1876200..1877414 1 NC_010645.1 catalyzes the formation of catechol from salicylate; salicylate hydroxylase 1877414 6267416 BAV1787 Bordetella avium 197N salicylate hydroxylase YP_786305.1 1876200 D 360910 CDS YP_786306.1 187478282 6265592 1877470..1877877 1 NC_010645.1 membrane protein 1877877 6265592 BAV1788 Bordetella avium 197N membrane protein YP_786306.1 1877470 D 360910 CDS YP_786307.1 187478283 6265593 complement(1878085..1880160) 1 NC_010645.1 Its C-terminal region is similar to the C-terminal region of Pseudomonas putida regulator MorA.; signaling protein 1880160 6265593 BAV1789 Bordetella avium 197N signaling protein YP_786307.1 1878085 R 360910 CDS YP_786308.1 187478284 6265594 complement(1880268..1881332) 1 NC_010645.1 cointegrate resolution protein 1881332 6265594 BAV1790 Bordetella avium 197N cointegrate resolution protein YP_786308.1 1880268 R 360910 CDS YP_786309.1 187478285 6265595 1881450..1882562 1 NC_010645.1 integrase 1882562 6265595 BAV1791 Bordetella avium 197N integrase YP_786309.1 1881450 D 360910 CDS YP_786310.1 187478286 6265596 1882640..1882921 1 NC_010645.1 peptidyl-prolyl cis-trans isomerase 1882921 ppiC 6265596 ppiC Bordetella avium 197N peptidyl-prolyl cis-trans isomerase YP_786310.1 1882640 D 360910 CDS YP_786311.1 187478287 6267561 complement(1883033..1883452) 1 NC_010645.1 acetyltransferase 1883452 6267561 BAV1793 Bordetella avium 197N acetyltransferase YP_786311.1 1883033 R 360910 CDS YP_786312.1 187478288 6265597 complement(1883449..>1883709) 1 NC_010645.1 membrane protein >1883709 6265597 BAV1794 Bordetella avium 197N membrane protein YP_786312.1 1883449 R 360910 CDS YP_786313.1 187478289 6265598 complement(1883725..1884024) 1 NC_010645.1 hypothetical protein 1884024 6265598 BAV1795 Bordetella avium 197N hypothetical protein YP_786313.1 1883725 R 360910 CDS YP_786314.1 187478290 6265599 1884083..1884301 1 NC_010645.1 protein SlyX 1884301 slyX 6265599 slyX Bordetella avium 197N protein SlyX YP_786314.1 1884083 D 360910 CDS YP_786315.1 187478291 6267759 1884316..1885098 1 NC_010645.1 hydrolase 1885098 6267759 BAV1797 Bordetella avium 197N hydrolase YP_786315.1 1884316 D 360910 CDS YP_786316.1 187478292 6265600 <1885246..1885386 1 NC_010645.1 Partial CDS. Similar to the N-terminus of Bordetella parapertussis hypothetical protein, Rhizobium meliloti hypothetical protein, and to Ruegeria sp. PR1b rc119; hypothetical protein 1885386 6265600 BAV1798 Bordetella avium 197N hypothetical protein YP_786316.1 <1885246 D 360910 CDS YP_786317.1 187478293 6265601 1885580..1886446 1 NC_010645.1 GntR family transcriptional regulator 1886446 6265601 BAV1799 Bordetella avium 197N GntR family transcriptional regulator YP_786317.1 1885580 D 360910 CDS YP_786318.1 187478294 6265602 1886573..1887310 1 NC_010645.1 glutamine amidotransferase 1887310 6265602 BAV1800 Bordetella avium 197N glutamine amidotransferase YP_786318.1 1886573 D 360910 CDS YP_786319.1 187478295 6265603 complement(1887316..1888176) 1 NC_010645.1 LysR family transcriptional regulator 1888176 6265603 BAV1801 Bordetella avium 197N LysR family transcriptional regulator YP_786319.1 1887316 R 360910 CDS YP_786320.1 187478296 6265604 1888329..1889702 1 NC_010645.1 transporter 1889702 6265604 BAV1802 Bordetella avium 197N transporter YP_786320.1 1888329 D 360910 CDS YP_786321.1 187478297 6265605 complement(1889792..>1891963) 1 NC_010645.1 ; Also similar to BAV1084 (49.7 38d.).; non-hemolytic phospholipase C >1891963 plcN2 6265605 plcN2 Bordetella avium 197N non-hemolytic phospholipase C YP_786321.1 1889792 R 360910 CDS YP_786322.1 187478298 6267543 complement(1892197..1894176) 1 NC_010645.1 lipoprotein 1894176 6267543 BAV1804 Bordetella avium 197N lipoprotein YP_786322.1 1892197 R 360910 CDS YP_786323.1 187478299 6265606 1894546..1895901 1 NC_010645.1 alcohol dehydrogenase cytochrome c subunit 1895901 adhB 6265606 adhB Bordetella avium 197N alcohol dehydrogenase cytochrome c subunit YP_786323.1 1894546 D 360910 CDS YP_786324.1 187478300 6266601 1895894..1896802 1 NC_010645.1 cytochrome c family protein 1896802 6266601 BAV1806 Bordetella avium 197N cytochrome c family protein YP_786324.1 1895894 D 360910 CDS YP_786325.1 187478301 6265607 <1896806..1896973 1 NC_010645.1 hypothetical protein 1896973 6265607 BAV1807 Bordetella avium 197N hypothetical protein YP_786325.1 <1896806 D 360910 CDS YP_786326.1 187478302 6265608 1897160..1897873 1 NC_010645.1 Mg(2+) transport ATPase protein c 1897873 mgtC 6265608 mgtC Bordetella avium 197N Mg(2+) transport ATPase protein c YP_786326.1 1897160 D 360910 CDS YP_786327.1 187478303 6267350 1897922..1898365 1 NC_010645.1 dehydratase 1898365 6267350 BAV1809 Bordetella avium 197N dehydratase YP_786327.1 1897922 D 360910 CDS YP_786328.1 187478304 6265609 complement(1898373..1899986) 1 NC_010645.1 hypothetical protein 1899986 6265609 BAV1810 Bordetella avium 197N hypothetical protein YP_786328.1 1898373 R 360910 CDS YP_786329.1 187478305 6265610 complement(1900026..1900148) 1 NC_010645.1 No similarity outside the bordetellae; hypothetical protein 1900148 6265610 BAV1810A Bordetella avium 197N hypothetical protein YP_786329.1 1900026 R 360910 CDS YP_786330.1 187478306 6265611 complement(1900205..1900489) 1 NC_010645.1 No similarity outside the bordetellae; hypothetical protein 1900489 6265611 BAV1811 Bordetella avium 197N hypothetical protein YP_786330.1 1900205 R 360910 CDS YP_786331.1 187478307 6265612 1900876..1902294 1 NC_010645.1 outer membrane efflux protein 1902294 6265612 BAV1812 Bordetella avium 197N outer membrane efflux protein YP_786331.1 1900876 D 360910 CDS YP_786332.1 187478308 6265613 1902291..1903355 1 NC_010645.1 HlyD family secretion protein 1903355 6265613 BAV1813 Bordetella avium 197N HlyD family secretion protein YP_786332.1 1902291 D 360910 CDS YP_786333.1 187478309 6265614 1903355..1906075 1 NC_010645.1 ABC transporter ATP-binding protein 1906075 6265614 BAV1814 Bordetella avium 197N ABC transporter ATP-binding protein YP_786333.1 1903355 D 360910 CDS YP_786334.1 187478310 6265615 1906079..1907206 1 NC_010645.1 ABC transporter permease 1907206 6265615 BAV1815 Bordetella avium 197N ABC transporter permease YP_786334.1 1906079 D 360910 CDS YP_786335.1 187478311 6265616 1907244..1907693 1 NC_010645.1 hypothetical protein 1907693 6265616 BAV1816 Bordetella avium 197N hypothetical protein YP_786335.1 1907244 D 360910 CDS YP_786336.1 187478312 6265617 1907930..1908337 1 NC_010645.1 membrane protein 1908337 6265617 BAV1817 Bordetella avium 197N membrane protein YP_786336.1 1907930 D 360910 CDS YP_786337.1 187478313 6265618 complement(1908408..1909073) 1 NC_010645.1 hypothetical protein 1909073 6265618 BAV1818 Bordetella avium 197N hypothetical protein YP_786337.1 1908408 R 360910 CDS YP_786338.1 187478314 6265619 1909239..1909730 1 NC_010645.1 hypothetical protein 1909730 6265619 BAV1819 Bordetella avium 197N hypothetical protein YP_786338.1 1909239 D 360910 CDS YP_786339.1 187478315 6265620 <1910391..1910651 1 NC_010645.1 hypothetical protein 1910651 6265620 BAV1820 Bordetella avium 197N hypothetical protein YP_786339.1 <1910391 D 360910 CDS YP_786340.1 187478316 6265621 1910754..1912133 1 NC_010645.1 flavin-containing monooxygenase 1912133 6265621 BAV1821 Bordetella avium 197N flavin-containing monooxygenase YP_786340.1 1910754 D 360910 CDS YP_786341.1 187478317 6265622 complement(1912231..1913658) 1 NC_010645.1 amidase 1913658 6265622 BAV1822 Bordetella avium 197N amidase YP_786341.1 1912231 R 360910 CDS YP_786342.1 187478318 6265623 complement(1913758..1915062) 1 NC_010645.1 alpha-ketoglutarate permease 1915062 kgtP 6265623 kgtP Bordetella avium 197N alpha-ketoglutarate permease YP_786342.1 1913758 R 360910 CDS YP_786343.1 187478319 6267274 1915143..1916132 1 NC_010645.1 transcriptional regulator 1916132 6267274 BAV1824 Bordetella avium 197N transcriptional regulator YP_786343.1 1915143 D 360910 CDS YP_786344.1 187478320 6265624 complement(1916158..1917297) 1 NC_010645.1 hypothetical protein 1917297 6265624 BAV1825 Bordetella avium 197N hypothetical protein YP_786344.1 1916158 R 360910 CDS YP_786345.1 187478321 6265625 1917518..1918585 1 NC_010645.1 No significant similarity outside the bordetellae; membrane protein 1918585 6265625 BAV1826 Bordetella avium 197N membrane protein YP_786345.1 1917518 D 360910 CDS YP_786346.1 187478322 6265626 complement(1918608..1919039) 1 NC_010645.1 hypothetical protein 1919039 6265626 BAV1827 Bordetella avium 197N hypothetical protein YP_786346.1 1918608 R 360910 CDS YP_786347.1 187478323 6265627 complement(1919125..1919481) 1 NC_010645.1 arsenate reductase 1919481 arsC 6265627 arsC Bordetella avium 197N arsenate reductase YP_786347.1 1919125 R 360910 CDS YP_786348.1 187478324 6266663 complement(1919519..1920970) 1 NC_010645.1 CoA-transferase 1920970 6266663 BAV1829 Bordetella avium 197N CoA-transferase YP_786348.1 1919519 R 360910 CDS YP_786349.1 187478325 6265628 1921150..1922607 1 NC_010645.1 deoxyribodipyrimidine photo-lyase 1922607 phrB 6265628 phrB Bordetella avium 197N deoxyribodipyrimidine photo-lyase YP_786349.1 1921150 D 360910 CDS YP_786350.1 187478326 6267536 complement(1922604..1922927) 1 NC_010645.1 hypothetical protein 1922927 6267536 BAV1831 Bordetella avium 197N hypothetical protein YP_786350.1 1922604 R 360910 CDS YP_786351.1 187478327 6265629 1923058..1923552 1 NC_010645.1 glutathione peroxidase 1923552 6265629 BAV1832 Bordetella avium 197N glutathione peroxidase YP_786351.1 1923058 D 360910 CDS YP_786352.1 187478328 6265630 1923653..1923928 1 NC_010645.1 hypothetical protein 1923928 6265630 BAV1833 Bordetella avium 197N hypothetical protein YP_786352.1 1923653 D 360910 CDS YP_786353.1 187478329 6265631 1923925..1924701 1 NC_010645.1 lipoate-protein ligase A 1924701 6265631 BAV1834 Bordetella avium 197N lipoate-protein ligase A YP_786353.1 1923925 D 360910 CDS YP_786354.1 187478330 6265632 1924741..1925556 1 NC_010645.1 lipoprotein 1925556 6265632 BAV1835 Bordetella avium 197N lipoprotein YP_786354.1 1924741 D 360910 CDS YP_786355.1 187478331 6265633 complement(1925730..1927019) 1 NC_010645.1 glutamate dehydrogenase 1927019 gdhA 6265633 gdhA Bordetella avium 197N glutamate dehydrogenase YP_786355.1 1925730 R 360910 CDS YP_786356.1 187478332 6267063 complement(1927444..1928850) 1 NC_010645.1 GntR family transcriptional regulator 1928850 6267063 BAV1837 Bordetella avium 197N GntR family transcriptional regulator YP_786356.1 1927444 R 360910 CDS YP_786357.1 187478333 6265634 1929395..1929625 1 NC_010645.1 hypothetical protein 1929625 6265634 BAV1838 Bordetella avium 197N hypothetical protein YP_786357.1 1929395 D 360910 CDS YP_786358.1 187478334 6265635 1929697..1930986 1 NC_010645.1 transporter 1930986 6265635 BAV1839 Bordetella avium 197N transporter YP_786358.1 1929697 D 360910 CDS YP_786359.1 187478335 6265636 complement(1930997..1932124) 1 NC_010645.1 membrane protein 1932124 6265636 BAV1840 Bordetella avium 197N membrane protein YP_786359.1 1930997 R 360910 CDS YP_786360.1 187478336 6265637 complement(1932152..1933075) 1 NC_010645.1 thiosulfate sulfurtransferase 1933075 cysA 6265637 cysA Bordetella avium 197N thiosulfate sulfurtransferase YP_786360.1 1932152 R 360910 CDS YP_786361.1 187478337 6266839 1933343..1933834 1 NC_010645.1 RNA polymerase sigma factor 1933834 6266839 BAV1842 Bordetella avium 197N RNA polymerase sigma factor YP_786361.1 1933343 D 360910 CDS YP_786362.1 187478338 6265638 complement(1934166..>1934783) 1 NC_010645.1 FMN reductase >1934783 ssuE 6265638 ssuE Bordetella avium 197N FMN reductase YP_786362.1 1934166 R 360910 CDS YP_786363.1 187478339 6267776 complement(1934852..>1935973) 1 NC_010645.1 monooxygenase >1935973 6267776 BAV1844 Bordetella avium 197N monooxygenase YP_786363.1 1934852 R 360910 CDS YP_786364.1 187478340 6265639 complement(1935970..1937280) 1 NC_010645.1 monooxygenase 1937280 6265639 BAV1845 Bordetella avium 197N monooxygenase YP_786364.1 1935970 R 360910 CDS YP_786365.1 187478341 6265640 complement(1937286..1938275) 1 NC_010645.1 monooxygenase 1938275 6265640 BAV1846 Bordetella avium 197N monooxygenase YP_786365.1 1937286 R 360910 CDS YP_786366.1 187478342 6265641 complement(1938289..1939905) 1 NC_010645.1 ABC transporter ATP-binding protein 1939905 6265641 BAV1847 Bordetella avium 197N ABC transporter ATP-binding protein YP_786366.1 1938289 R 360910 CDS YP_786367.1 187478343 6265642 complement(1939902..1940729) 1 NC_010645.1 ABC transporter permease 1940729 6265642 BAV1848 Bordetella avium 197N ABC transporter permease YP_786367.1 1939902 R 360910 CDS YP_786368.1 187478344 6265643 complement(1940726..1941697) 1 NC_010645.1 ABC transporter permease 1941697 6265643 BAV1849 Bordetella avium 197N ABC transporter permease YP_786368.1 1940726 R 360910 CDS YP_786369.1 187478345 6265644 complement(1941707..1943287) 1 NC_010645.1 ABC transporter periplasmic binding protein 1943287 6265644 BAV1850 Bordetella avium 197N ABC transporter periplasmic binding protein YP_786369.1 1941707 R 360910 CDS YP_786370.1 187478346 6265645 1943519..1944022 1 NC_010645.1 PadR family transcriptional regulator 1944022 6265645 BAV1851 Bordetella avium 197N PadR family transcriptional regulator YP_786370.1 1943519 D 360910 CDS YP_786371.1 187478347 6265646 1944037..1944342 1 NC_010645.1 hypothetical protein 1944342 6265646 BAV1852 Bordetella avium 197N hypothetical protein YP_786371.1 1944037 D 360910 CDS YP_786372.1 187478348 6265647 complement(1944367..1945221) 1 NC_010645.1 ferric-enterobactin hydrolase 1945221 bfeB 6265647 bfeB Bordetella avium 197N ferric-enterobactin hydrolase YP_786372.1 1944367 R 360910 CDS YP_786373.1 187478349 6266703 complement(1945221..1947428) 1 NC_010645.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 1947428 bfeA 6266703 bfeA Bordetella avium 197N outer membrane receptor FepA YP_786373.1 1945221 R 360910 CDS YP_786374.1 187478350 6266702 <1947547..1948470 1 NC_010645.1 enterobactin-dependent positive regulator 1948470 bfeR 6266702 bfeR Bordetella avium 197N enterobactin-dependent positive regulator YP_786374.1 <1947547 D 360910 CDS YP_786375.1 187478351 6265648 complement(1949522..1949746) 1 NC_010645.1 No similarity outside the bordetellae; integrase 1949746 6265648 BAV1857 Bordetella avium 197N integrase YP_786375.1 1949522 R 360910 CDS YP_786376.1 187478352 6265649 complement(1949730..>1949858) 1 NC_010645.1 hypothetical protein >1949858 6265649 BAV1858 Bordetella avium 197N hypothetical protein YP_786376.1 1949730 R 360910 CDS YP_786377.1 187478353 6265650 1950062..1950946 1 NC_010645.1 No similarity outside the bordetellae; hypothetical protein 1950946 6265650 BAV1859 Bordetella avium 197N hypothetical protein YP_786377.1 1950062 D 360910 CDS YP_786378.1 187478354 6265651 1951249..1953477 1 NC_010645.1 isocitrate dehydrogenase (NADP) 1953477 icd 6265651 icd Bordetella avium 197N isocitrate dehydrogenase (NADP) YP_786378.1 1951249 D 360910 CDS YP_786379.1 187478355 6267229 1953748..1954206 1 NC_010645.1 membrane protein 1954206 6267229 BAV1861 Bordetella avium 197N membrane protein YP_786379.1 1953748 D 360910 CDS YP_786380.1 187478356 6265652 1954214..1955731 1 NC_010645.1 membrane protein 1955731 6265652 BAV1862 Bordetella avium 197N membrane protein YP_786380.1 1954214 D 360910 CDS YP_786381.1 187478357 6265653 1956292..1956471 1 NC_010645.1 hypothetical protein 1956471 6265653 BAV1863 Bordetella avium 197N hypothetical protein YP_786381.1 1956292 D 360910 CDS YP_786382.1 187478358 6265654 <1956540..1958615 1 NC_010645.1 ; Similar to the C-terminal regions of several autotransporters; autotransporter 1958615 6265654 BAV1864 Bordetella avium 197N autotransporter YP_786382.1 <1956540 D 360910 CDS YP_786383.1 187478359 6265655 complement(1958896..1959648) 1 NC_010645.1 ABC transporter ATP-binding protein 1959648 6265655 BAV1865 Bordetella avium 197N ABC transporter ATP-binding protein YP_786383.1 1958896 R 360910 CDS YP_786384.1 187478360 6265656 complement(1959656..1960309) 1 NC_010645.1 ABC transporter permease 1960309 6265656 BAV1866 Bordetella avium 197N ABC transporter permease YP_786384.1 1959656 R 360910 CDS YP_786385.1 187478361 6265657 complement(1960334..1961092) 1 NC_010645.1 ABC transporter solute-binding protein 1961092 6265657 BAV1867 Bordetella avium 197N ABC transporter solute-binding protein YP_786385.1 1960334 R 360910 CDS YP_786386.1 187478362 6265658 1961574..1961909 1 NC_010645.1 Similar to exported proteins within the bordetellae only; hypothetical protein 1961909 6265658 BAV1868 Bordetella avium 197N hypothetical protein YP_786386.1 1961574 D 360910 CDS YP_786387.1 187478363 6265659 complement(1962173..>1963732) 1 NC_010645.1 signaling protein >1963732 6265659 BAV1869 Bordetella avium 197N signaling protein YP_786387.1 1962173 R 360910 CDS YP_786388.1 187478364 6265660 complement(1963793..>1964581) 1 NC_010645.1 ; No significant similarity outside the bordetellae; membrane protein >1964581 6265660 BAV1870 Bordetella avium 197N membrane protein YP_786388.1 1963793 R 360910 CDS YP_786389.1 187478365 6265661 1964731..1965510 1 NC_010645.1 hydratase 1965510 6265661 BAV1871 Bordetella avium 197N hydratase YP_786389.1 1964731 D 360910 CDS YP_786390.1 187478366 6265662 complement(1965515..1967044) 1 NC_010645.1 membrane protein 1967044 6265662 BAV1872 Bordetella avium 197N membrane protein YP_786390.1 1965515 R 360910 CDS YP_786391.1 187478367 6265663 <1967185..1967520 1 NC_010645.1 hypothetical protein 1967520 6265663 BAV1873 Bordetella avium 197N hypothetical protein YP_786391.1 <1967185 D 360910 CDS YP_786392.1 187478368 6265664 1967811..1969010 1 NC_010645.1 response regulator 1969010 6265664 BAV1874 Bordetella avium 197N response regulator YP_786392.1 1967811 D 360910 CDS YP_786393.1 187478369 6265665 1969437..1970060 1 NC_010645.1 virulence factors transcription regulator 1970060 bvgA 6265665 bvgA Bordetella avium 197N virulence factors transcription regulator YP_786393.1 1969437 D 360910 CDS YP_786394.1 187478370 6266746 join(<1970064..1973378,1973380..1973724) 1 NC_010645.1 virulence sensor protein 1973724 bvgS 6266746 bvgS Bordetella avium 197N virulence sensor protein YP_786394.1 <1970064 D 360910 CDS YP_786395.1 187478371 6265666 1973791..1975815 1 NC_010645.1 membrane protein 1975815 6265666 BAV1878 Bordetella avium 197N membrane protein YP_786395.1 1973791 D 360910 CDS YP_786396.1 187478372 6265667 1976069..1976794 1 NC_010645.1 GntR family transcriptional regulator 1976794 6265667 BAV1879 Bordetella avium 197N GntR family transcriptional regulator YP_786396.1 1976069 D 360910 CDS YP_786397.1 187478373 6265668 1976950..1978653 1 NC_010645.1 also similar to BAV0902 (52.585 38d.); thiamine pyrophosphate protein 1978653 ilvG 6265668 ilvG Bordetella avium 197N thiamine pyrophosphate protein YP_786397.1 1976950 D 360910 CDS YP_786398.1 187478374 6267240 1978807..1979292 1 NC_010645.1 ; No similarity outside of the bordetellae; hypothetical protein 1979292 6267240 BAV1881 Bordetella avium 197N hypothetical protein YP_786398.1 1978807 D 360910 CDS YP_786399.1 187478375 6265669 1979369..1980253 1 NC_010645.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 1980253 psd 6265669 psd Bordetella avium 197N phosphatidylserine decarboxylase YP_786399.1 1979369 D 360910 CDS YP_786400.1 187478376 6267586 1980437..1981615 1 NC_010645.1 L-lactate dehydrogenase 1981615 lctD 6267586 lctD Bordetella avium 197N L-lactate dehydrogenase YP_786400.1 1980437 D 360910 CDS YP_786401.1 187478377 6267280 complement(1981593..1982417) 1 NC_010645.1 hypothetical protein 1982417 6267280 BAV1884 Bordetella avium 197N hypothetical protein YP_786401.1 1981593 R 360910 CDS YP_786402.1 187478378 6265670 complement(1982511..1983071) 1 NC_010645.1 acetyltransferase 1983071 6265670 BAV1885 Bordetella avium 197N acetyltransferase YP_786402.1 1982511 R 360910 CDS YP_786403.1 187478379 6265671 complement(1983068..1983478) 1 NC_010645.1 ribosome-associated heat shock protein 1983478 hslR 6265671 hslR Bordetella avium 197N ribosome-associated heat shock protein YP_786403.1 1983068 R 360910 CDS YP_786404.1 187478380 6267213 1983533..1983910 1 NC_010645.1 membrane protein 1983910 6267213 BAV1887 Bordetella avium 197N membrane protein YP_786404.1 1983533 D 360910 CDS YP_786405.1 187478381 6265672 1983916..1984806 1 NC_010645.1 membrane protein 1984806 6265672 BAV1888 Bordetella avium 197N membrane protein YP_786405.1 1983916 D 360910 CDS YP_786406.1 187478382 6265673 1984898..1985512 1 NC_010645.1 glutathione S-transferase 1985512 gst 6265673 gst Bordetella avium 197N glutathione S-transferase YP_786406.1 1984898 D 360910 CDS YP_786407.1 187478383 6267134 1985767..1986498 1 NC_010645.1 aspartate racemase 1986498 6267134 BAV1890 Bordetella avium 197N aspartate racemase YP_786407.1 1985767 D 360910 CDS YP_786408.1 187478384 6265674 complement(1986554..1987255) 1 NC_010645.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein 1987255 livF 6265674 livF Bordetella avium 197N high-affinity branched-chain amino acid ABC transporter ATP-binding protein YP_786408.1 1986554 R 360910 CDS YP_786409.1 187478385 6267297 complement(1987256..1988023) 1 NC_010645.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 1988023 livG 6267297 livG Bordetella avium 197N leucine/isoleucine/valine transporter ATP-binding subunit YP_786409.1 1987256 R 360910 CDS YP_786410.1 187478386 6267298 complement(1988020..1989261) 1 NC_010645.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit 1989261 livM 6267298 livM Bordetella avium 197N leucine/isoleucine/valine transporter permease subunit YP_786410.1 1988020 R 360910 CDS YP_786411.1 187478387 6267302 complement(1989261..1990187) 1 NC_010645.1 high-affinity branched-chain amino acid ABC transporter permease 1990187 livH 6267302 livH Bordetella avium 197N high-affinity branched-chain amino acid ABC transporter permease YP_786411.1 1989261 R 360910 CDS YP_786412.1 187478388 6267299 complement(1990291..1991406) 1 NC_010645.1 Also similar to BAV1903 (59.299 38d).; high-affinity branched-chain amino acid ABC transporter leu/ile/val-binding protein 1991406 livJ1 6267299 livJ1 Bordetella avium 197N high-affinity branched-chain amino acid ABC transporter leu/ile/val-binding protein YP_786412.1 1990291 R 360910 CDS YP_786413.1 187478389 6267300 complement(1991654..1991980) 1 NC_010645.1 membrane protein 1991980 6267300 BAV1896 Bordetella avium 197N membrane protein YP_786413.1 1991654 R 360910 CDS YP_786414.1 187478390 6265675 complement(1991977..>1992531) 1 NC_010645.1 membrane protein >1992531 6265675 BAV1897 Bordetella avium 197N membrane protein YP_786414.1 1991977 R 360910 CDS YP_786415.1 187478391 6265676 complement(1992528..1993361) 1 NC_010645.1 pyrroline-5-carboxylate reductase 1993361 proC 6265676 proC Bordetella avium 197N pyrroline-5-carboxylate reductase YP_786415.1 1992528 R 360910 CDS YP_786416.1 187478392 6267577 1993556..1994866 1 NC_010645.1 glycerol-3-phosphate-binding periplasmic protein 1994866 ugpB 6267577 ugpB Bordetella avium 197N glycerol-3-phosphate-binding periplasmic protein YP_786416.1 1993556 D 360910 CDS YP_786417.1 187478393 6267915 1995125..1996006 1 NC_010645.1 sn-glycerol-3-phosphate ABC transporter permease 1996006 ugpA 6267915 ugpA Bordetella avium 197N sn-glycerol-3-phosphate ABC transporter permease YP_786417.1 1995125 D 360910 CDS YP_786418.1 187478394 6267914 1996034..1996885 1 NC_010645.1 sn-glycerol-3-phosphate ABC transporter permease 1996885 ugpE 6267914 ugpE Bordetella avium 197N sn-glycerol-3-phosphate ABC transporter permease YP_786418.1 1996034 D 360910 CDS YP_786419.1 187478395 6267917 1996932..1998017 1 NC_010645.1 part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit 1998017 ugpC 6267917 ugpC Bordetella avium 197N glycerol-3-phosphate transporter ATP-binding subunit YP_786419.1 1996932 D 360910 CDS YP_786420.1 187478396 6267916 complement(1998103..1999224) 1 NC_010645.1 Also similar to BAV1895 (59.299 38d).; leu/ile/val-binding protein 1999224 livJ2 6267916 livJ2 Bordetella avium 197N leu/ile/val-binding protein YP_786420.1 1998103 R 360910 CDS YP_786421.1 187478397 6267301 1999412..2000020 1 NC_010645.1 hypothetical protein 2000020 6267301 BAV1904 Bordetella avium 197N hypothetical protein YP_786421.1 1999412 D 360910 CDS YP_786422.1 187478398 6265677 complement(2000025..2000525) 1 NC_010645.1 ferritin-like DNA-binding protein 2000525 dps 6265677 dps Bordetella avium 197N ferritin-like DNA-binding protein YP_786422.1 2000025 R 360910 CDS YP_786423.1 187478399 6266901 complement(2000592..2001008) 1 NC_010645.1 hypothetical protein 2001008 6266901 BAV1906 Bordetella avium 197N hypothetical protein YP_786423.1 2000592 R 360910 CDS YP_786424.1 187478400 6265678 complement(2001005..2002618) 1 NC_010645.1 choline dehydrogenase 2002618 betA 6265678 betA Bordetella avium 197N choline dehydrogenase YP_786424.1 2001005 R 360910 CDS YP_786425.1 187478401 6266698 complement(2002615..2004105) 1 NC_010645.1 betaine aldehyde dehydrogenase 2004105 betB 6266698 betB Bordetella avium 197N betaine aldehyde dehydrogenase YP_786425.1 2002615 R 360910 CDS YP_786426.1 187478402 6266699 complement(2004119..2005132) 1 NC_010645.1 hypothetical protein 2005132 6266699 BAV1909 Bordetella avium 197N hypothetical protein YP_786426.1 2004119 R 360910 CDS YP_786427.1 187478403 6265679 complement(2005159..2005968) 1 NC_010645.1 ABC transporter permease 2005968 6265679 BAV1910 Bordetella avium 197N ABC transporter permease YP_786427.1 2005159 R 360910 CDS YP_786428.1 187478404 6265680 complement(2005965..2006795) 1 NC_010645.1 ABC transporter ATP-binding protein 2006795 6265680 BAV1911 Bordetella avium 197N ABC transporter ATP-binding protein YP_786428.1 2005965 R 360910 CDS YP_786429.1 187478405 6265681 complement(2006792..2007394) 1 NC_010645.1 glutathione S-transferase 2007394 6265681 BAV1912 Bordetella avium 197N glutathione S-transferase YP_786429.1 2006792 R 360910 CDS YP_786430.1 187478406 6265682 complement(2007434..2007811) 1 NC_010645.1 translation-inhibition endoribonuclease 2007811 6265682 BAV1913 Bordetella avium 197N translation-inhibition endoribonuclease YP_786430.1 2007434 R 360910 CDS YP_786431.1 187478407 6265683 complement(2007814..2008950) 1 NC_010645.1 hypothetical protein 2008950 6265683 BAV1914 Bordetella avium 197N hypothetical protein YP_786431.1 2007814 R 360910 CDS YP_786432.1 187478408 6265684 complement(2008963..2010084) 1 NC_010645.1 dioxygenase 2010084 6265684 BAV1915 Bordetella avium 197N dioxygenase YP_786432.1 2008963 R 360910 CDS YP_786433.1 187478409 6265685 2010348..2011019 1 NC_010645.1 transcriptional regulator 2011019 6265685 BAV1916 Bordetella avium 197N transcriptional regulator YP_786433.1 2010348 D 360910 CDS YP_786434.1 187478410 6265686 complement(2011022..2012527) 1 NC_010645.1 methylmalonate-semialdehyde dehydrogenase 2012527 mmsA 6265686 mmsA Bordetella avium 197N methylmalonate-semialdehyde dehydrogenase YP_786434.1 2011022 R 360910 CDS YP_786435.1 187478411 6267362 2012668..2013621 1 NC_010645.1 LysR family transcriptional regulator 2013621 6267362 BAV1918 Bordetella avium 197N LysR family transcriptional regulator YP_786435.1 2012668 D 360910 CDS YP_786436.1 187478412 6265687 complement(2013543..2014508) 1 NC_010645.1 hydrogen peroxide-inducible genes activator 2014508 oxyR 6265687 oxyR Bordetella avium 197N hydrogen peroxide-inducible genes activator YP_786436.1 2013543 R 360910 CDS YP_786437.1 187478413 6267466 complement(2014564..2016618) 1 NC_010645.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 2016618 recG 6267466 recG Bordetella avium 197N ATP-dependent DNA helicase RecG YP_786437.1 2014564 R 360910 CDS YP_786438.1 187478414 6267628 complement(2016630..2017016) 1 NC_010645.1 translation-inhibition endoribonuclease 2017016 6267628 BAV1921 Bordetella avium 197N translation-inhibition endoribonuclease YP_786438.1 2016630 R 360910 CDS YP_786439.1 187478415 6265688 complement(2017609..2018385) 1 NC_010645.1 ferredoxin--NADP reductase 2018385 fpr 6265688 fpr Bordetella avium 197N ferredoxin--NADP reductase YP_786439.1 2017609 R 360910 CDS YP_786440.1 187478416 6267031 2018715..2019758 1 NC_010645.1 ABC transporter substrate-binding protein 2019758 6267031 BAV1923 Bordetella avium 197N ABC transporter substrate-binding protein YP_786440.1 2018715 D 360910 CDS YP_786441.1 187478417 6265689 2019864..2021522 1 NC_010645.1 ABC transporter permease 2021522 6265689 BAV1924 Bordetella avium 197N ABC transporter permease YP_786441.1 2019864 D 360910 CDS YP_786442.1 187478418 6265690 <2021527..2022351 1 NC_010645.1 ABC transporter ATP-binding protein 2022351 6265690 BAV1925 Bordetella avium 197N ABC transporter ATP-binding protein YP_786442.1 <2021527 D 360910 CDS YP_786443.1 187478419 6265691 complement(2022285..2023187) 1 NC_010645.1 pirin-like protein 2023187 6265691 BAV1926 Bordetella avium 197N pirin-like protein YP_786443.1 2022285 R 360910 CDS YP_786444.1 187478420 6265692 complement(2023225..2023923) 1 NC_010645.1 pirin-like protein 2023923 6265692 BAV1927 Bordetella avium 197N pirin-like protein YP_786444.1 2023225 R 360910 CDS YP_786445.1 187478421 6265693 2024070..2025020 1 NC_010645.1 LysR family transcriptional regulator 2025020 6265693 BAV1928 Bordetella avium 197N LysR family transcriptional regulator YP_786445.1 2024070 D 360910 CDS YP_786446.1 187478422 6265694 complement(2025161..2026636) 1 NC_010645.1 nitrogen regulation protein NR(I) 2026636 glnG 6265694 glnG Bordetella avium 197N nitrogen regulation protein NR(I) YP_786446.1 2025161 R 360910 CDS YP_786447.1 187478423 6267084 complement(2026636..2027697) 1 NC_010645.1 nitrogen regulation protein NR(II) 2027697 glnL 6267084 glnL Bordetella avium 197N nitrogen regulation protein NR(II) YP_786447.1 2026636 R 360910 CDS YP_786448.1 187478424 6267087 complement(2027791..2029203) 1 NC_010645.1 glutamine synthetase 2029203 glnA 6267087 glnA Bordetella avium 197N glutamine synthetase YP_786448.1 2027791 R 360910 CDS YP_786449.1 187478425 6267079 complement(2029385..2030602) 1 NC_010645.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2030602 hemN 6267079 hemN Bordetella avium 197N coproporphyrinogen III oxidase YP_786449.1 2029385 R 360910 CDS YP_786450.1 187478426 6267161 complement(2030613..2031212) 1 NC_010645.1 Ham1 protein-like protein 2031212 6267161 BAV1933 Bordetella avium 197N Ham1 protein-like protein YP_786450.1 2030613 R 360910 CDS YP_786451.1 187478427 6265695 2031369..2033174 1 NC_010645.1 signaling protein 2033174 6265695 BAV1934 Bordetella avium 197N signaling protein YP_786451.1 2031369 D 360910 CDS YP_786452.1 187478428 6265696 complement(2033094..2034737) 1 NC_010645.1 methyl-accepting chemotaxis protein 2034737 6265696 BAV1935 Bordetella avium 197N methyl-accepting chemotaxis protein YP_786452.1 2033094 R 360910 CDS YP_786453.1 187478429 6265697 complement(2035008..2035742) 1 NC_010645.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 2035742 rph 6265697 rph Bordetella avium 197N ribonuclease PH YP_786453.1 2035008 R 360910 CDS YP_786454.1 187478430 6267672 2035869..2036801 1 NC_010645.1 hypothetical protein 2036801 6267672 BAV1937 Bordetella avium 197N hypothetical protein YP_786454.1 2035869 D 360910 CDS YP_786455.1 187478431 6265699 2037735..2038922 1 NC_010645.1 dehydratase/racemase 2038922 6265699 BAV1939 Bordetella avium 197N dehydratase/racemase YP_786455.1 2037735 D 360910 CDS YP_786456.1 187478432 6265700 complement(2039207..2039992) 1 NC_010645.1 HlyD family secretion protein 2039992 6265700 BAV1940 Bordetella avium 197N HlyD family secretion protein YP_786456.1 2039207 R 360910 CDS YP_786457.1 187478433 6265701 complement(2039998..2041980) 1 NC_010645.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 2041980 secA 6265701 secA Bordetella avium 197N preprotein translocase subunit SecA YP_786457.1 2039998 R 360910 CDS YP_786458.1 187478434 6267745 complement(2041982..2044135) 1 NC_010645.1 membrane protein 2044135 6267745 BAV1942 Bordetella avium 197N membrane protein YP_786458.1 2041982 R 360910 CDS YP_786459.1 187478435 6265702 complement(2044145..2045968) 1 NC_010645.1 signal transduction protein 2045968 6265702 BAV1943 Bordetella avium 197N signal transduction protein YP_786459.1 2044145 R 360910 CDS YP_786460.1 187478436 6265703 complement(2045961..>2058989) 1 NC_010645.1 ; Weakly and partially similar to a wide range of proteins; secreted calcium-binding protein >2058989 6265703 BAV1944 Bordetella avium 197N secreted calcium-binding protein YP_786460.1 2045961 R 360910 CDS YP_786461.1 187478437 6265704 complement(2059011..2078393) 1 NC_010645.1 adhesin 2078393 6265704 BAV1945 Bordetella avium 197N adhesin YP_786461.1 2059011 R 360910 CDS YP_786462.1 187478438 6265705 complement(2078481..2080082) 1 NC_010645.1 outer membrane protein 2080082 6265705 BAV1946 Bordetella avium 197N outer membrane protein YP_786462.1 2078481 R 360910 CDS YP_786463.1 187478439 6265706 complement(2080075..2080917) 1 NC_010645.1 hypothetical protein 2080917 6265706 BAV1947 Bordetella avium 197N hypothetical protein YP_786463.1 2080075 R 360910 CDS YP_786464.1 187478440 6265707 complement(2080929..2081705) 1 NC_010645.1 SapC-like protein 2081705 6265707 BAV1948 Bordetella avium 197N SapC-like protein YP_786464.1 2080929 R 360910 CDS YP_786465.1 187478441 6265708 complement(2081941..2083782) 1 NC_010645.1 two-component sensor histidine kinase 2083782 6265708 BAV1949 Bordetella avium 197N two-component sensor histidine kinase YP_786465.1 2081941 R 360910 CDS YP_786466.1 187478442 6265709 complement(2083779..2084456) 1 NC_010645.1 two-component response regulator 2084456 6265709 BAV1950 Bordetella avium 197N two-component response regulator YP_786466.1 2083779 R 360910 CDS YP_786467.1 187478443 6265710 complement(2084709..2085974) 1 NC_010645.1 lipoprotein 2085974 6265710 BAV1951 Bordetella avium 197N lipoprotein YP_786467.1 2084709 R 360910 CDS YP_786468.1 187478444 6265711 complement(2086043..2087533) 1 NC_010645.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 2087533 amn 6265711 amn Bordetella avium 197N AMP nucleosidase YP_786468.1 2086043 R 360910 CDS YP_786469.1 187478445 6266620 2087769..2088347 1 NC_010645.1 hypothetical protein 2088347 6266620 BAV1953 Bordetella avium 197N hypothetical protein YP_786469.1 2087769 D 360910 CDS YP_786470.1 187478446 6265712 complement(2088401..2089171) 1 NC_010645.1 oxidoreductase 2089171 6265712 BAV1954 Bordetella avium 197N oxidoreductase YP_786470.1 2088401 R 360910 CDS YP_786471.1 187478447 6265713 2089307..2089939 1 NC_010645.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 2089939 gmk 6265713 gmk Bordetella avium 197N guanylate kinase YP_786471.1 2089307 D 360910 CDS YP_786472.1 187478448 6267105 2089971..2090174 1 NC_010645.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 2090174 rpoZ 6267105 rpoZ Bordetella avium 197N DNA-directed RNA polymerase subunit omega YP_786472.1 2089971 D 360910 CDS YP_786473.1 187478449 6267709 2090198..2092468 1 NC_010645.1 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 2092468 spoT 6267709 spoT Bordetella avium 197N guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase YP_786473.1 2090198 D 360910 CDS YP_786474.1 187478450 6267767 complement(2092513..2093241) 1 NC_010645.1 similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein 2093241 glnQ 6267767 glnQ Bordetella avium 197N glutamine ABC transporter ATP-binding protein YP_786474.1 2092513 R 360910 CDS YP_786475.1 187478451 6267089 complement(2093238..>2093897) 1 NC_010645.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease >2093897 glnP 6267089 glnP Bordetella avium 197N glutamine ABC transporter permease YP_786475.1 2093238 R 360910 CDS YP_786476.1 187478452 6267088 complement(2093978..2094724) 1 NC_010645.1 similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein 2094724 glnH 6267088 glnH Bordetella avium 197N glutamine ABC transporter periplasmic protein YP_786476.1 2093978 R 360910 CDS YP_786477.1 187478453 6267085 complement(2094955..2096733) 1 NC_010645.1 A related gene, hagA (BAVXXX) may function to export the B. avium hemagglutinin, HagB; an additional pair of fhaBC/hagAB genes occurs at BAVXXX; hemolysin activator protein 2096733 fhaC 6267085 fhaC Bordetella avium 197N hemolysin activator protein YP_786477.1 2094955 R 360910 CDS YP_786478.1 187478454 6266975 complement(2096726..2097850) 1 NC_010645.1 Fimbrial adhesin 2097850 fhaE 6266975 fhaE Bordetella avium 197N Fimbrial adhesin YP_786478.1 2096726 R 360910 CDS YP_786479.1 187478455 6266977 complement(2097847..>2100366) 1 NC_010645.1 outer membrane fimbrial usher protein >2100366 fhaA 6266977 fhaA Bordetella avium 197N outer membrane fimbrial usher protein YP_786479.1 2097847 R 360910 CDS YP_786480.1 187478456 6266973 complement(2100379..2101173) 1 NC_010645.1 Fimbrial chaperone protein 2101173 fhaD 6266973 fhaD Bordetella avium 197N Fimbrial chaperone protein YP_786480.1 2100379 R 360910 CDS YP_786481.1 187478457 6266976 complement(2101302..2101898) 1 NC_010645.1 One of 11 fimbrial subunits; fimbrial subunit 2101898 fimA 6266976 fimA Bordetella avium 197N fimbrial subunit YP_786481.1 2101302 R 360910 CDS YP_786482.1 187478458 6266978 complement(2102421..2110286) 1 NC_010645.1 Filamentous hemagglutinin/adhesin 2110286 fhaB 6266978 fhaB Bordetella avium 197N Filamentous hemagglutinin/adhesin YP_786482.1 2102421 R 360910 CDS YP_786483.1 187478459 6266974 complement(2110737..2111411) 1 NC_010645.1 ABC transporter ATP-binding protein 2111411 6266974 BAV1967 Bordetella avium 197N ABC transporter ATP-binding protein YP_786483.1 2110737 R 360910 CDS YP_786484.1 187478460 6265714 2111458..2112066 1 NC_010645.1 esterase 2112066 6265714 BAV1968 Bordetella avium 197N esterase YP_786484.1 2111458 D 360910 CDS YP_786485.1 187478461 6265715 complement(2112051..2113997) 1 NC_010645.1 peptidyl-prolyl cis-trans isomerase 2113997 ppiD 6265715 ppiD Bordetella avium 197N peptidyl-prolyl cis-trans isomerase YP_786485.1 2112051 R 360910 CDS YP_786486.1 187478462 6267562 2114259..2115008 1 NC_010645.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; cytoplasmic glycerophosphodiester phosphodiesterase 2115008 ugpQ 6267562 ugpQ Bordetella avium 197N cytoplasmic glycerophosphodiester phosphodiesterase YP_786486.1 2114259 D 360910 CDS YP_786487.1 187478463 6267918 <2115018..2115881 1 NC_010645.1 hypothetical protein 2115881 6267918 BAV1971 Bordetella avium 197N hypothetical protein YP_786487.1 <2115018 D 360910 CDS YP_786488.1 187478464 6265716 complement(2115888..2117282) 1 NC_010645.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2117282 6265716 BAV1972 Bordetella avium 197N dihydrolipoamide dehydrogenase YP_786488.1 2115888 R 360910 CDS YP_786489.1 187478465 6265717 complement(2117355..2118083) 1 NC_010645.1 antioxidant 2118083 6265717 BAV1973 Bordetella avium 197N antioxidant YP_786489.1 2117355 R 360910 CDS YP_786490.1 187478466 6265718 complement(2118237..2118440) 1 NC_010645.1 heavy metal transport protein 2118440 6265718 BAV1974 Bordetella avium 197N heavy metal transport protein YP_786490.1 2118237 R 360910 CDS YP_786491.1 187478467 6265719 2118845..2119240 1 NC_010645.1 MerR family transcriptional regulator 2119240 6265719 BAV1975 Bordetella avium 197N MerR family transcriptional regulator YP_786491.1 2118845 D 360910 CDS YP_786492.1 187478468 6265720 complement(2119237..2120667) 1 NC_010645.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 2120667 rumA 6265720 rumA Bordetella avium 197N 23S rRNA 5-methyluridine methyltransferase YP_786492.1 2119237 R 360910 CDS YP_786493.1 187478469 6267737 complement(2120780..2121328) 1 NC_010645.1 hypothetical protein 2121328 6267737 BAV1977 Bordetella avium 197N hypothetical protein YP_786493.1 2120780 R 360910 CDS YP_786494.1 187478470 6265721 complement(2121432..2122211) 1 NC_010645.1 hypothetical protein 2122211 6265721 BAV1978 Bordetella avium 197N hypothetical protein YP_786494.1 2121432 R 360910 CDS YP_786495.1 187478471 6265722 complement(2122208..2123059) 1 NC_010645.1 peptidoglycan-binding peptidase 2123059 6265722 BAV1979 Bordetella avium 197N peptidoglycan-binding peptidase YP_786495.1 2122208 R 360910 CDS YP_786496.1 187478472 6265723 complement(2123077..2123871) 1 NC_010645.1 protein-L-isoaspartate O-methyltransferase 2123871 pcm 6265723 pcm Bordetella avium 197N protein-L-isoaspartate O-methyltransferase YP_786496.1 2123077 R 360910 CDS YP_786497.1 187478473 6267490 complement(2123856..2124614) 1 NC_010645.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 2124614 surE 6267490 surE Bordetella avium 197N stationary phase survival protein SurE YP_786497.1 2123856 R 360910 CDS YP_786498.1 187478474 6267784 2124784..2125422 1 NC_010645.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 2125422 6267784 BAV1982 Bordetella avium 197N putative glycerol-3-phosphate acyltransferase PlsY YP_786498.1 2124784 D 360910 CDS YP_786499.1 187478475 6265724 complement(2125575..2126612) 1 NC_010645.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 2126612 gcp 6265724 gcp Bordetella avium 197N putative DNA-binding/iron metalloprotein/AP endonuclease YP_786499.1 2125575 R 360910 CDS YP_786500.1 187478476 6267058 2126711..2128003 1 NC_010645.1 xanthine/uracil permease 2128003 6267058 BAV1984 Bordetella avium 197N xanthine/uracil permease YP_786500.1 2126711 D 360910 CDS YP_786501.1 187478477 6265725 2128157..2129170 1 NC_010645.1 luciferase-like monooxygenase 2129170 6265725 BAV1985 Bordetella avium 197N luciferase-like monooxygenase YP_786501.1 2128157 D 360910 CDS YP_786502.1 187478478 6265726 2129282..2129665 1 NC_010645.1 Also similar to BAV2379 (40.000 38d.); thioredoxin 2 2129665 trxC 6265726 trxC Bordetella avium 197N thioredoxin 2 YP_786502.1 2129282 D 360910 CDS YP_786503.1 187478479 6267901 complement(2129668..2130270) 1 NC_010645.1 hypothetical protein 2130270 6267901 BAV1987 Bordetella avium 197N hypothetical protein YP_786503.1 2129668 R 360910 CDS YP_786504.1 187478480 6265727 complement(2130293..2131084) 1 NC_010645.1 ABC transporter substrate binding protein 2131084 6265727 BAV1988 Bordetella avium 197N ABC transporter substrate binding protein YP_786504.1 2130293 R 360910 CDS YP_786505.1 187478481 6265728 complement(2131081..2131848) 1 NC_010645.1 ABC transporter permease 2131848 6265728 BAV1989 Bordetella avium 197N ABC transporter permease YP_786505.1 2131081 R 360910 CDS YP_786506.1 187478482 6265729 complement(2131845..2132843) 1 NC_010645.1 ABC transporter substrate-binding protein 2132843 6265729 BAV1990 Bordetella avium 197N ABC transporter substrate-binding protein YP_786506.1 2131845 R 360910 CDS YP_786507.1 187478483 6265730 complement(2132872..2133630) 1 NC_010645.1 ABC transporter ATP-binding protein 2133630 6265730 BAV1991 Bordetella avium 197N ABC transporter ATP-binding protein YP_786507.1 2132872 R 360910 CDS YP_786508.1 187478484 6265731 complement(2133794..>2135398) 1 NC_010645.1 ABC transporter ATP-binding protein >2135398 6265731 BAV1992 Bordetella avium 197N ABC transporter ATP-binding protein YP_786508.1 2133794 R 360910 CDS YP_786509.1 187478485 6265732 complement(2135598..2136557) 1 NC_010645.1 muramoyltetrapeptide carboxypeptidase 2136557 ldcA 6265732 ldcA Bordetella avium 197N muramoyltetrapeptide carboxypeptidase YP_786509.1 2135598 R 360910 CDS YP_786510.1 187478486 6267282 complement(2136554..>2137027) 1 NC_010645.1 zinc-binding cytidine/deoxycytidylate deaminase >2137027 6267282 BAV1994 Bordetella avium 197N zinc-binding cytidine/deoxycytidylate deaminase YP_786510.1 2136554 R 360910 CDS YP_786511.1 187478487 6265733 complement(2137020..2137868) 1 NC_010645.1 hypothetical protein 2137868 6265733 BAV1995 Bordetella avium 197N hypothetical protein YP_786511.1 2137020 R 360910 CDS YP_786512.1 187478488 6265734 complement(2137954..2138379) 1 NC_010645.1 No similarity outside of the Bordetellae; hypothetical protein 2138379 6265734 BAV1996 Bordetella avium 197N hypothetical protein YP_786512.1 2137954 R 360910 CDS YP_786513.1 187478489 6265735 complement(2138486..2138839) 1 NC_010645.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit G 2138839 phaG 6265735 phaG Bordetella avium 197N putative monovalent cation/H+ antiporter subunit G YP_786513.1 2138486 R 360910 CDS YP_786514.1 187478490 6267516 complement(2138836..2139117) 1 NC_010645.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit F 2139117 phaF 6267516 phaF Bordetella avium 197N putative monovalent cation/H+ antiporter subunit F YP_786514.1 2138836 R 360910 CDS YP_786515.1 187478491 6267515 complement(2139117..2139599) 1 NC_010645.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 2139599 phaE 6267515 phaE Bordetella avium 197N putative monovalent cation/H+ antiporter subunit E YP_786515.1 2139117 R 360910 CDS YP_786516.1 187478492 6267514 complement(2139601..2141223) 1 NC_010645.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 2141223 phaD 6267514 phaD Bordetella avium 197N putative monovalent cation/H+ antiporter subunit D YP_786516.1 2139601 R 360910 CDS YP_786517.1 187478493 6267513 complement(2141220..2141564) 1 NC_010645.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 2141564 phaC 6267513 phaC Bordetella avium 197N putative monovalent cation/H+ antiporter subunit C YP_786517.1 2141220 R 360910 CDS YP_786518.1 187478494 6267512 complement(2141566..2144487) 1 NC_010645.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 2144487 phaAB 6267512 phaAB Bordetella avium 197N putative monovalent cation/H+ antiporter subunit A YP_786518.1 2141566 R 360910 CDS YP_786519.1 187478495 6267511 complement(2144874..2147495) 1 NC_010645.1 GTP-binding protein 2147495 6267511 BAV2003 Bordetella avium 197N GTP-binding protein YP_786519.1 2144874 R 360910 CDS YP_786520.1 187478496 6265736 complement(2147492..2148607) 1 NC_010645.1 exonuclease 2148607 6265736 BAV2004 Bordetella avium 197N exonuclease YP_786520.1 2147492 R 360910 CDS YP_786521.1 187478497 6265737 complement(2148648..2149949) 1 NC_010645.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 2149949 dadA2 6265737 dadA2 Bordetella avium 197N D-amino acid dehydrogenase small subunit YP_786521.1 2148648 R 360910 CDS YP_786522.1 187478498 6266849 2150088..2150555 1 NC_010645.1 leucine-responsive regulatory protein 2150555 lrp 6266849 lrp Bordetella avium 197N leucine-responsive regulatory protein YP_786522.1 2150088 D 360910 CDS YP_786523.1 187478499 6267315 2150908..2151537 1 NC_010645.1 membrane protein 2151537 6267315 BAV2007 Bordetella avium 197N membrane protein YP_786523.1 2150908 D 360910 CDS YP_786524.1 187478500 6265738 2151621..2152751 1 NC_010645.1 No similarity outside of the Bordetellae; hypothetical protein 2152751 6265738 BAV2008 Bordetella avium 197N hypothetical protein YP_786524.1 2151621 D 360910 CDS YP_786525.1 187478501 6265739 2152781..2154082 1 NC_010645.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2154082 murA 6265739 murA Bordetella avium 197N UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_786525.1 2152781 D 360910 CDS YP_786526.1 187478502 6267398 2154244..2155005 1 NC_010645.1 glycerol-3-phosphate regulon repressor 2155005 glpR 6267398 glpR Bordetella avium 197N glycerol-3-phosphate regulon repressor YP_786526.1 2154244 D 360910 CDS YP_786527.1 187478503 6267095 2155034..2156635 1 NC_010645.1 glycerol-3-phosphate dehydrogenase 2156635 glpD 6267095 glpD Bordetella avium 197N glycerol-3-phosphate dehydrogenase YP_786527.1 2155034 D 360910 CDS YP_786528.1 187478504 6267093 2156673..2157194 1 NC_010645.1 hypothetical protein 2157194 6267093 BAV2012 Bordetella avium 197N hypothetical protein YP_786528.1 2156673 D 360910 CDS YP_786529.1 187478505 6265740 2157196..2157963 1 NC_010645.1 hypothetical protein 2157963 6265740 BAV2013 Bordetella avium 197N hypothetical protein YP_786529.1 2157196 D 360910 CDS YP_786530.1 187478506 6265741 2158094..2158534 1 NC_010645.1 hypothetical protein 2158534 6265741 BAV2014 Bordetella avium 197N hypothetical protein YP_786530.1 2158094 D 360910 CDS YP_786531.1 187478507 6265742 complement(2158627..2159016) 1 NC_010645.1 hypothetical protein 2159016 6265742 BAV2015 Bordetella avium 197N hypothetical protein YP_786531.1 2158627 R 360910 CDS YP_786532.1 187478508 6265743 2159154..2159975 1 NC_010645.1 membrane-associated protease 2159975 6265743 BAV2016 Bordetella avium 197N membrane-associated protease YP_786532.1 2159154 D 360910 CDS YP_786533.1 187478509 6265744 complement(2160137..2160553) 1 NC_010645.1 peptidyl-tRNA hydrolase domain-containing protein 2160553 6265744 BAV2017 Bordetella avium 197N peptidyl-tRNA hydrolase domain-containing protein YP_786533.1 2160137 R 360910 CDS YP_786534.1 187478510 6265745 2161003..2162022 1 NC_010645.1 glycosyl transferase 2162022 6265745 BAV2018 Bordetella avium 197N glycosyl transferase YP_786534.1 2161003 D 360910 CDS YP_786535.1 187478511 6265746 2162110..2162742 1 NC_010645.1 hypothetical protein 2162742 6265746 BAV2019 Bordetella avium 197N hypothetical protein YP_786535.1 2162110 D 360910 CDS YP_786536.1 187478512 6265747 <2162771..2163217 1 NC_010645.1 hypothetical protein 2163217 6265747 BAV2020 Bordetella avium 197N hypothetical protein YP_786536.1 <2162771 D 360910 CDS YP_786537.1 187478513 6265748 2163442..2163909 1 NC_010645.1 MarR family transcriptional regulator 2163909 slyA 6265748 slyA Bordetella avium 197N MarR family transcriptional regulator YP_786537.1 2163442 D 360910 CDS YP_786538.1 187478514 6267757 2163906..2165945 1 NC_010645.1 multidrug efflux protein 2165945 6267757 BAV2022 Bordetella avium 197N multidrug efflux protein YP_786538.1 2163906 D 360910 CDS YP_786539.1 187478515 6265749 2165951..2166163 1 NC_010645.1 component of multidrug efflux system 2166163 6265749 BAV2023 Bordetella avium 197N component of multidrug efflux system YP_786539.1 2165951 D 360910 CDS YP_786540.1 187478516 6265750 2166168..2167058 1 NC_010645.1 multidrug resistance protein 2167058 6265750 BAV2024 Bordetella avium 197N multidrug resistance protein YP_786540.1 2166168 D 360910 CDS YP_786541.1 187478517 6265751 2167087..2168526 1 NC_010645.1 outer membrane multidrug efflux protein 2168526 6265751 BAV2025 Bordetella avium 197N outer membrane multidrug efflux protein YP_786541.1 2167087 D 360910 CDS YP_786542.1 187478518 6265752 complement(2168529..2169239) 1 NC_010645.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YpfH 2169239 6265752 BAV2026 Bordetella avium 197N esterase YpfH YP_786542.1 2168529 R 360910 CDS YP_786543.1 187478519 6265753 2169433..2170134 1 NC_010645.1 hypothetical protein 2170134 6265753 BAV2027 Bordetella avium 197N hypothetical protein YP_786543.1 2169433 D 360910 CDS YP_786544.1 187478520 6265754 2170220..2171518 1 NC_010645.1 hypothetical protein 2171518 6265754 BAV2028 Bordetella avium 197N hypothetical protein YP_786544.1 2170220 D 360910 CDS YP_786545.1 187478521 6265755 2171534..2174680 1 NC_010645.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 2174680 dnaE2 6265755 dnaE2 Bordetella avium 197N error-prone DNA polymerase YP_786545.1 2171534 D 360910 CDS YP_786546.1 187478522 6266890 complement(2174684..2175925) 1 NC_010645.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 2175925 dadA3 6266890 dadA3 Bordetella avium 197N D-amino acid dehydrogenase small subunit YP_786546.1 2174684 R 360910 CDS YP_786547.1 187478523 6266850 complement(2176041..2176478) 1 NC_010645.1 hypothetical protein 2176478 6266850 BAV2031 Bordetella avium 197N hypothetical protein YP_786547.1 2176041 R 360910 CDS YP_786548.1 187478524 6265756 complement(2176504..2177730) 1 NC_010645.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2177730 hmp 6265756 hmp Bordetella avium 197N nitric oxide dioxygenase YP_786548.1 2176504 R 360910 CDS YP_786549.1 187478525 6267186 2177863..2178324 1 NC_010645.1 hypothetical protein 2178324 6267186 BAV2033 Bordetella avium 197N hypothetical protein YP_786549.1 2177863 D 360910 CDS YP_786550.1 187478526 6265757 complement(2178330..2179412) 1 NC_010645.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 2179412 dinB 6265757 dinB Bordetella avium 197N DNA polymerase IV YP_786550.1 2178330 R 360910 CDS YP_786551.1 187478527 6266880 2179579..2179989 1 NC_010645.1 thioesterase-like protein 2179989 6266880 BAV2035 Bordetella avium 197N thioesterase-like protein YP_786551.1 2179579 D 360910 CDS YP_786552.1 187478528 6265758 complement(2179997..2180443) 1 NC_010645.1 . Seems to be unique to the Bordetellae.; lipoprotein 2180443 6265758 BAV2036 Bordetella avium 197N lipoprotein YP_786552.1 2179997 R 360910 CDS YP_786553.1 187478529 6265759 2180575..2182503 1 NC_010645.1 peptidase 2182503 6265759 BAV2037 Bordetella avium 197N peptidase YP_786553.1 2180575 D 360910 CDS YP_786554.1 187478530 6265760 2182625..2185141 1 NC_010645.1 penicillin-binding protein 2185141 mrcA 6265760 mrcA Bordetella avium 197N penicillin-binding protein YP_786554.1 2182625 D 360910 CDS YP_786555.1 187478531 6267384 complement(2185149..2185865) 1 NC_010645.1 serine/threonine protein phosphatase 2185865 pphA 6267384 pphA Bordetella avium 197N serine/threonine protein phosphatase YP_786555.1 2185149 R 360910 CDS YP_786556.1 187478532 6267559 2185995..2187161 1 NC_010645.1 iron-regulated membrane protein 2187161 6267559 BAV2040 Bordetella avium 197N iron-regulated membrane protein YP_786556.1 2185995 D 360910 CDS YP_786557.1 187478533 6265761 2187158..2187340 1 NC_010645.1 membrane protein 2187340 6265761 BAV2041 Bordetella avium 197N membrane protein YP_786557.1 2187158 D 360910 CDS YP_786558.1 187478534 6265762 2187576..2188631 1 NC_010645.1 membrane protein 2188631 6265762 BAV2042 Bordetella avium 197N membrane protein YP_786558.1 2187576 D 360910 CDS YP_786559.1 187478535 6265763 2188907..2189281 1 NC_010645.1 ferredoxin 2189281 6265763 BAV2043 Bordetella avium 197N ferredoxin YP_786559.1 2188907 D 360910 CDS YP_786560.1 187478536 6265764 complement(2189339..2190403) 1 NC_010645.1 mannose-6-phosphate isomerase 2190403 pmi 6265764 pmi Bordetella avium 197N mannose-6-phosphate isomerase YP_786560.1 2189339 R 360910 CDS YP_786561.1 187478537 6267546 complement(2190534..2190746) 1 NC_010645.1 . Seems to be unique to the Bordetellae.; hypothetical protein 2190746 6267546 BAV2045 Bordetella avium 197N hypothetical protein YP_786561.1 2190534 R 360910 CDS YP_786562.1 187478538 6265765 complement(2190903..2191151) 1 NC_010645.1 . Seems to be unique to the Bordetellae.; hypothetical protein 2191151 6265765 BAV2046 Bordetella avium 197N hypothetical protein YP_786562.1 2190903 R 360910 CDS YP_786563.1 187478539 6265766 complement(2191372..2192790) 1 NC_010645.1 heavy metal sensing two-component sytem, sensor kinase 2192790 irlS 6265766 irlS Bordetella avium 197N heavy metal sensing two-component sytem, sensor kinase YP_786563.1 2191372 R 360910 CDS YP_786564.1 187478540 6267249 complement(2192787..>2193458) 1 NC_010645.1 heavy metal sensing two-component sytem response regulator >2193458 irlR 6267249 irlR Bordetella avium 197N heavy metal sensing two-component sytem response regulator YP_786564.1 2192787 R 360910 CDS YP_786565.1 187478541 6267248 2193606..2194091 1 NC_010645.1 hypothetical protein 2194091 6267248 BAV2049 Bordetella avium 197N hypothetical protein YP_786565.1 2193606 D 360910 CDS YP_786566.1 187478542 6265767 2194105..2194524 1 NC_010645.1 hypothetical protein 2194524 6265767 BAV2050 Bordetella avium 197N hypothetical protein YP_786566.1 2194105 D 360910 CDS YP_786567.1 187478543 6265768 complement(2194577..2194891) 1 NC_010645.1 hypothetical protein 2194891 6265768 BAV2051 Bordetella avium 197N hypothetical protein YP_786567.1 2194577 R 360910 CDS YP_786568.1 187478544 6265769 complement(2194907..2195494) 1 NC_010645.1 lipoprotein 2195494 6265769 BAV2052 Bordetella avium 197N lipoprotein YP_786568.1 2194907 R 360910 CDS YP_786569.1 187478545 6265770 complement(2195667..2196590) 1 NC_010645.1 membrane protein 2196590 6265770 BAV2053 Bordetella avium 197N membrane protein YP_786569.1 2195667 R 360910 CDS YP_786570.1 187478546 6265771 2196741..2197211 1 NC_010645.1 AsnC family transcriptional regulator 2197211 6265771 BAV2054 Bordetella avium 197N AsnC family transcriptional regulator YP_786570.1 2196741 D 360910 CDS YP_786571.1 187478547 6265772 2197260..2197538 1 NC_010645.1 . Seems to be unique to the Bordetellae.; hypothetical protein 2197538 6265772 BAV2055 Bordetella avium 197N hypothetical protein YP_786571.1 2197260 D 360910 CDS YP_786572.1 187478548 6265773 2197535..2197966 1 NC_010645.1 hypothetical protein 2197966 6265773 BAV2056 Bordetella avium 197N hypothetical protein YP_786572.1 2197535 D 360910 CDS YP_786573.1 187478549 6265774 2198117..2200078 1 NC_010645.1 high-affinity choline transport protein 2200078 betT 6265774 betT Bordetella avium 197N high-affinity choline transport protein YP_786573.1 2198117 D 360910 CDS YP_786574.1 187478550 6266700 complement(2200262..>2200993) 1 NC_010645.1 endonuclease >2200993 6266700 BAV2058 Bordetella avium 197N endonuclease YP_786574.1 2200262 R 360910 CDS YP_786575.1 187478551 6265775 complement(2201649..2201981) 1 NC_010645.1 hypothetical protein 2201981 6265775 BAV2058A Bordetella avium 197N hypothetical protein YP_786575.1 2201649 R 360910 CDS YP_786576.1 187478552 6265776 complement(2202162..2202569) 1 NC_010645.1 hypothetical protein 2202569 6265776 BAV2059 Bordetella avium 197N hypothetical protein YP_786576.1 2202162 R 360910 CDS YP_786577.1 187478553 6265777 complement(2202801..2202923) 1 NC_010645.1 Doubtful CDS.; hypothetical protein 2202923 6265777 BAV2060 Bordetella avium 197N hypothetical protein YP_786577.1 2202801 R 360910 CDS YP_786578.1 187478554 6265778 complement(2202972..>2203106) 1 NC_010645.1 phage protein (partial) >2203106 6265778 BAV2061 Bordetella avium 197N phage protein (partial) YP_786578.1 2202972 R 360910 CDS YP_786579.1 187478555 6265779 complement(2203253..2203735) 1 NC_010645.1 ribonuclease 2203735 6265779 BAV2062 Bordetella avium 197N ribonuclease YP_786579.1 2203253 R 360910 CDS YP_786580.1 187478556 6265780 2203862..2204041 1 NC_010645.1 Doubtful CDS.; hypothetical protein 2204041 6265780 BAV2063 Bordetella avium 197N hypothetical protein YP_786580.1 2203862 D 360910 CDS YP_786581.1 187478557 6267878 complement(2204610..2204981) 1 NC_010645.1 MerR family transcriptional regulator 2204981 6267878 BAV2064 Bordetella avium 197N MerR family transcriptional regulator YP_786581.1 2204610 R 360910 CDS YP_786582.1 187478558 6265782 complement(2205039..2205389) 1 NC_010645.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2205389 ihfA 6265782 ihfA Bordetella avium 197N integration host factor subunit alpha YP_786582.1 2205039 R 360910 CDS YP_786583.1 187478559 6267232 complement(2205392..2207806) 1 NC_010645.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2207806 pheT 6267232 pheT Bordetella avium 197N phenylalanyl-tRNA synthetase subunit beta YP_786583.1 2205392 R 360910 CDS YP_786584.1 187478560 6267526 complement(2207819..2208841) 1 NC_010645.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2208841 pheS 6267526 pheS Bordetella avium 197N phenylalanyl-tRNA synthetase subunit alpha YP_786584.1 2207819 R 360910 CDS YP_786585.1 187478561 6267525 complement(2208914..2209273) 1 NC_010645.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2209273 rplT 6267525 rplT Bordetella avium 197N 50S ribosomal protein L20 YP_786585.1 2208914 R 360910 CDS YP_786586.1 187478562 6267690 complement(2209289..2209486) 1 NC_010645.1 50S ribosomal protein L35 2209486 rpmI 6267690 rpmI Bordetella avium 197N 50S ribosomal protein L35 YP_786586.1 2209289 R 360910 CDS YP_786587.1 187478563 6267703 complement(2209839..2211368) 1 NC_010645.1 competence protein 2211368 comM 6267703 comM Bordetella avium 197N competence protein YP_786587.1 2209839 R 360910 CDS YP_786588.1 187478564 6266802 complement(2211645..2211908) 1 NC_010645.1 hypothetical protein 2211908 6266802 BAV2071 Bordetella avium 197N hypothetical protein YP_786588.1 2211645 R 360910 CDS YP_786589.1 187478565 6265783 2212306..2213502 1 NC_010645.1 ferredoxin reductase 2213502 6265783 BAV2072 Bordetella avium 197N ferredoxin reductase YP_786589.1 2212306 D 360910 CDS YP_786590.1 187478566 6265784 2214129..2214467 1 NC_010645.1 nitrogen regulatory protein P-II 2214467 glnK 6265784 glnK Bordetella avium 197N nitrogen regulatory protein P-II YP_786590.1 2214129 D 360910 CDS YP_786591.1 187478567 6267086 2214503..2215741 1 NC_010645.1 ammonium transporter 2215741 amtB 6267086 amtB Bordetella avium 197N ammonium transporter YP_786591.1 2214503 D 360910 CDS YP_786592.1 187478568 6266628 complement(2215904..2216392) 1 NC_010645.1 Weakly similar to steroid delta-isomerases from Nocardioides simplex and Pseudomonas putida.; isomerase 2216392 6266628 BAV2075 Bordetella avium 197N isomerase YP_786592.1 2215904 R 360910 CDS YP_786593.1 187478569 6265785 complement(2216395..>2217177) 1 NC_010645.1 short-chain dehydrogenase >2217177 6265785 BAV2076 Bordetella avium 197N short-chain dehydrogenase YP_786593.1 2216395 R 360910 CDS YP_786594.1 187478570 6265786 complement(2217182..2217718) 1 NC_010645.1 lipoprotein 2217718 6265786 BAV2077 Bordetella avium 197N lipoprotein YP_786594.1 2217182 R 360910 CDS YP_786595.1 187478571 6265787 complement(2217715..2219037) 1 NC_010645.1 transporter 2219037 6265787 BAV2078 Bordetella avium 197N transporter YP_786595.1 2217715 R 360910 CDS YP_786596.1 187478572 6265788 complement(2219034..2219612) 1 NC_010645.1 hypothetical protein 2219612 6265788 BAV2079 Bordetella avium 197N hypothetical protein YP_786596.1 2219034 R 360910 CDS YP_786597.1 187478573 6265789 complement(2219636..2220856) 1 NC_010645.1 cyclopropane-fatty-acyl-phospholipid synthase 2220856 cfa 6265789 cfa Bordetella avium 197N cyclopropane-fatty-acyl-phospholipid synthase YP_786597.1 2219636 R 360910 CDS YP_786598.1 187478574 6266770 complement(2220859..2221677) 1 NC_010645.1 hypothetical protein 2221677 6266770 BAV2081 Bordetella avium 197N hypothetical protein YP_786598.1 2220859 R 360910 CDS YP_786599.1 187478575 6265790 complement(2221674..2222972) 1 NC_010645.1 dehydrogenase 2222972 6265790 BAV2082 Bordetella avium 197N dehydrogenase YP_786599.1 2221674 R 360910 CDS YP_786600.1 187478576 6265791 2223286..2224194 1 NC_010645.1 hypothetical protein 2224194 6265791 BAV2083 Bordetella avium 197N hypothetical protein YP_786600.1 2223286 D 360910 CDS YP_786601.1 187478577 6265792 complement(2224368..2228174) 1 NC_010645.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 2228174 putA 6265792 putA Bordetella avium 197N trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_786601.1 2224368 R 360910 CDS YP_786602.1 187478578 6267550 complement(2228319..2228969) 1 NC_010645.1 lipoprotein 2228969 6267550 BAV2085 Bordetella avium 197N lipoprotein YP_786602.1 2228319 R 360910 CDS YP_786603.1 187478579 6265793 complement(2228974..2230641) 1 NC_010645.1 paraquat-inducible protein B 2230641 pqiB 6265793 pqiB Bordetella avium 197N paraquat-inducible protein B YP_786603.1 2228974 R 360910 CDS YP_786604.1 187478580 6267567 complement(2230673..2231974) 1 NC_010645.1 paraquat-inducible protein A 2231974 pqiA 6267567 pqiA Bordetella avium 197N paraquat-inducible protein A YP_786604.1 2230673 R 360910 CDS YP_786605.1 187478581 6267566 complement(2231977..>2234280) 1 NC_010645.1 ATP-dependent clp protease ATP-binding >2234280 clpA 6267566 clpA Bordetella avium 197N ATP-dependent clp protease ATP-binding YP_786605.1 2231977 R 360910 CDS YP_786606.1 187478582 6266790 complement(2234334..2236457) 1 NC_010645.1 penicillin-binding protein 1C 2236457 pbpC 6266790 pbpC Bordetella avium 197N penicillin-binding protein 1C YP_786606.1 2234334 R 360910 CDS YP_786607.1 187478583 6267487 complement(2236475..>2241589) 1 NC_010645.1 peptidase inhibitor >2241589 6267487 BAV2090 Bordetella avium 197N peptidase inhibitor YP_786607.1 2236475 R 360910 CDS YP_786608.1 187478584 6265794 complement(2241750..2242064) 1 NC_010645.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2242064 clpS 6265794 clpS Bordetella avium 197N ATP-dependent Clp protease adaptor protein ClpS YP_786608.1 2241750 R 360910 CDS YP_786609.1 187478585 6266793 2242287..2242532 1 NC_010645.1 Also similar to BAV1492 , BAV1494, BAV2327 and BAV3424.; cold shock-like protein 2242532 cspD 6266793 cspD Bordetella avium 197N cold shock-like protein YP_786609.1 2242287 D 360910 CDS YP_786610.1 187478586 6266818 2242662..2243111 1 NC_010645.1 hypothetical protein 2243111 6266818 BAV2093 Bordetella avium 197N hypothetical protein YP_786610.1 2242662 D 360910 CDS YP_786611.1 187478587 6265795 complement(2243221..2244426) 1 NC_010645.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 2244426 paaJ 6265795 paaJ Bordetella avium 197N beta-ketoadipyl CoA thiolase YP_786611.1 2243221 R 360910 CDS YP_786612.1 187478588 6267474 complement(2244423..>2244608) 1 NC_010645.1 Partial CDS. Partially similar to peptide methionine sulfoxide reductase, MsrB, from Salmonella typhimurium and S. typhi; peptide methionine sulfoxide reductase (partial) >2244608 msrB 6267474 msrB Bordetella avium 197N peptide methionine sulfoxide reductase (partial) YP_786612.1 2244423 R 360910 CDS YP_786613.1 187478589 6267394 complement(2244612..2245190) 1 NC_010645.1 superoxide dismutase 2245190 sodB 6267394 sodB Bordetella avium 197N superoxide dismutase YP_786613.1 2244612 R 360910 CDS YP_786614.1 187478590 6267762 complement(2245283..2246641) 1 NC_010645.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2246641 xseA 6267762 xseA Bordetella avium 197N exodeoxyribonuclease VII large subunit YP_786614.1 2245283 R 360910 CDS YP_786615.1 187478591 6267945 2246987..2247583 1 NC_010645.1 biopolymer transport protein 2247583 exbB2 6267945 exbB2 Bordetella avium 197N biopolymer transport protein YP_786615.1 2246987 D 360910 CDS YP_786616.1 187478592 6266939 2247580..2247987 1 NC_010645.1 biopolymer transport protein 2247987 exbD2 6266939 exbD2 Bordetella avium 197N biopolymer transport protein YP_786616.1 2247580 D 360910 CDS YP_786617.1 187478593 6266941 2247984..2249012 1 NC_010645.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2249012 lpxK 6266941 lpxK Bordetella avium 197N tetraacyldisaccharide 4'-kinase YP_786617.1 2247984 D 360910 CDS YP_786618.1 187478594 6267314 2249040..2249231 1 NC_010645.1 hypothetical protein 2249231 6267314 BAV2101 Bordetella avium 197N hypothetical protein YP_786618.1 2249040 D 360910 CDS YP_786619.1 187478595 6265796 2249228..2250052 1 NC_010645.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2250052 kdsB 6265796 kdsB Bordetella avium 197N 3-deoxy-manno-octulosonate cytidylyltransferase YP_786619.1 2249228 D 360910 CDS YP_786620.1 187478596 6267270 2250148..2250804 1 NC_010645.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2250804 adk 6267270 adk Bordetella avium 197N adenylate kinase YP_786620.1 2250148 D 360910 CDS YP_786621.1 187478597 6266605 2250884..2251642 1 NC_010645.1 3-hydroxyacyl-CoA dehydrogenase 2251642 6266605 BAV2104 Bordetella avium 197N 3-hydroxyacyl-CoA dehydrogenase YP_786621.1 2250884 D 360910 CDS YP_786622.1 187478598 6265797 2251703..2253262 1 NC_010645.1 membrane protein 2253262 mviN 6265797 mviN Bordetella avium 197N membrane protein YP_786622.1 2251703 D 360910 CDS YP_786623.1 187478599 6267408 <2253507..2254526 1 NC_010645.1 transmembrane sensor protein 2254526 6267408 BAV2106 Bordetella avium 197N transmembrane sensor protein YP_786623.1 <2253507 D 360910 CDS YP_786624.1 187478600 6265798 2254728..2254991 1 NC_010645.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2254991 rpsT 6265798 rpsT Bordetella avium 197N 30S ribosomal protein S20 YP_786624.1 2254728 D 360910 CDS YP_786625.1 187478601 6267727 2255058..2255213 1 NC_010645.1 hypothetical protein 2255213 6267727 BAV2108 Bordetella avium 197N hypothetical protein YP_786625.1 2255058 D 360910 CDS YP_786626.1 187478602 6265799 2255249..2256196 1 NC_010645.1 reductase 2256196 6265799 BAV2109 Bordetella avium 197N reductase YP_786626.1 2255249 D 360910 CDS YP_786627.1 187478603 6265800 complement(2256268..2256558) 1 NC_010645.1 hypothetical protein 2256558 6265800 BAV2110 Bordetella avium 197N hypothetical protein YP_786627.1 2256268 R 360910 CDS YP_786628.1 187478604 6265801 2256716..2257897 1 NC_010645.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 2257897 argD 6265801 argD Bordetella avium 197N acetylornithine aminotransferase YP_786628.1 2256716 D 360910 CDS YP_786629.1 187478605 6266645 2257951..2258892 1 NC_010645.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 2258892 argF 6266645 argF Bordetella avium 197N ornithine carbamoyltransferase YP_786629.1 2257951 D 360910 CDS YP_786630.1 187478606 6266647 2258995..2260326 1 NC_010645.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 2260326 argG 6266647 argG Bordetella avium 197N argininosuccinate synthase YP_786630.1 2258995 D 360910 CDS YP_786631.1 187478607 6266648 complement(2260396..>2261748) 1 NC_010645.1 hypothetical protein >2261748 6266648 BAV2114 Bordetella avium 197N hypothetical protein YP_786631.1 2260396 R 360910 CDS YP_786632.1 187478608 6265802 complement(2261837..2263717) 1 NC_010645.1 potassium uptake protein 2263717 kup 6265802 kup Bordetella avium 197N potassium uptake protein YP_786632.1 2261837 R 360910 CDS YP_786633.1 187478609 6267278 complement(2263701..2264846) 1 NC_010645.1 two-component sensor kinase 2264846 6267278 BAV2116 Bordetella avium 197N two-component sensor kinase YP_786633.1 2263701 R 360910 CDS YP_786634.1 187478610 6265803 complement(2264953..2265624) 1 NC_010645.1 two-component response regulator 2265624 6265803 BAV2117 Bordetella avium 197N two-component response regulator YP_786634.1 2264953 R 360910 CDS YP_786635.1 187478611 6265804 complement(2265719..2266153) 1 NC_010645.1 biopolymer transport protein 2266153 exbD1 6265804 exbD1 Bordetella avium 197N biopolymer transport protein YP_786635.1 2265719 R 360910 CDS YP_786636.1 187478612 6266940 complement(2266153..2267067) 1 NC_010645.1 biopolymer transport protein 2267067 exbB1 6266940 exbB1 Bordetella avium 197N biopolymer transport protein YP_786636.1 2266153 R 360910 CDS YP_786637.1 187478613 6266938 complement(2267087..2267890) 1 NC_010645.1 siderophore-mediated iron transport protein 2267890 tonB 6266938 tonB Bordetella avium 197N siderophore-mediated iron transport protein YP_786637.1 2267087 R 360910 CDS YP_786638.1 187478614 6267891 complement(2268507..2268779) 1 NC_010645.1 DNA-binding protein Hu-beta 2268779 hopd 6267891 hopd Bordetella avium 197N DNA-binding protein Hu-beta YP_786638.1 2268507 R 360910 CDS YP_786639.1 187478615 6267193 complement(2269095..2270345) 1 NC_010645.1 hypothetical protein 2270345 6267193 BAV2122 Bordetella avium 197N hypothetical protein YP_786639.1 2269095 R 360910 CDS YP_786640.1 187478616 6265805 complement(2270391..2271131) 1 NC_010645.1 tRNA/rRNA methyltransferase 2271131 6265805 BAV2123 Bordetella avium 197N tRNA/rRNA methyltransferase YP_786640.1 2270391 R 360910 CDS YP_786641.1 187478617 6265806 complement(2271230..2273701) 1 NC_010645.1 ribonuclease R 2273701 rnr 6265806 rnr Bordetella avium 197N ribonuclease R YP_786641.1 2271230 R 360910 CDS YP_786642.1 187478618 6267865 complement(2274040..2274645) 1 NC_010645.1 hypothetical protein 2274645 6267865 BAV2125 Bordetella avium 197N hypothetical protein YP_786642.1 2274040 R 360910 CDS YP_786643.1 187478619 6267867 complement(2275216..2275656) 1 NC_010645.1 acetyltransferase 2275656 6267867 BAV2126 Bordetella avium 197N acetyltransferase YP_786643.1 2275216 R 360910 CDS YP_786644.1 187478620 6265808 2275801..2277084 1 NC_010645.1 arsenical pump membrane protein 2277084 arsB 6265808 arsB Bordetella avium 197N arsenical pump membrane protein YP_786644.1 2275801 D 360910 CDS YP_786645.1 187478621 6266662 2277142..2278350 1 NC_010645.1 membrane protein 2278350 6266662 BAV2128 Bordetella avium 197N membrane protein YP_786645.1 2277142 D 360910 CDS YP_786646.1 187478622 6265809 complement(2278425..2278943) 1 NC_010645.1 membrane protein 2278943 6265809 BAV2129 Bordetella avium 197N membrane protein YP_786646.1 2278425 R 360910 CDS YP_786647.1 187478623 6265810 2279040..2279951 1 NC_010645.1 LysR family transcriptional regulator 2279951 6265810 BAV2130 Bordetella avium 197N LysR family transcriptional regulator YP_786647.1 2279040 D 360910 CDS YP_786648.1 187478624 6265811 2280008..2281660 1 NC_010645.1 Similar to an internal region of the large subunit of ferredoxin-dependent glutamate synthase from many organisms.; membrane protein 2281660 6265811 BAV2131 Bordetella avium 197N membrane protein YP_786648.1 2280008 D 360910 CDS YP_786649.1 187478625 6267872 2283601..2284638 1 NC_010645.1 signaling membrane protein 2284638 6267872 BAV2132 Bordetella avium 197N signaling membrane protein YP_786649.1 2283601 D 360910 CDS YP_786650.1 187478626 6265813 2284689..2286041 1 NC_010645.1 signaling protein 2286041 6265813 BAV2133 Bordetella avium 197N signaling protein YP_786650.1 2284689 D 360910 CDS YP_786651.1 187478627 6265814 complement(2286042..2286419) 1 NC_010645.1 outer membrane protein 2286419 6265814 BAV2134 Bordetella avium 197N outer membrane protein YP_786651.1 2286042 R 360910 CDS YP_786652.1 187478628 6265815 complement(2286471..2287055) 1 NC_010645.1 spermidine N(1)-acetyltransferase 2287055 speG 6265815 speG Bordetella avium 197N spermidine N(1)-acetyltransferase YP_786652.1 2286471 R 360910 CDS YP_786653.1 187478629 6267765 complement(2287076..2287717) 1 NC_010645.1 pyrazinamidase/nicotinamidase 2287717 pncA 6267765 pncA Bordetella avium 197N pyrazinamidase/nicotinamidase YP_786653.1 2287076 R 360910 CDS YP_786654.1 187478630 6267547 complement(2287746..2288870) 1 NC_010645.1 membrane protein 2288870 6267547 BAV2137 Bordetella avium 197N membrane protein YP_786654.1 2287746 R 360910 CDS YP_786655.1 187478631 6265816 complement(2289594..>2289737) 1 NC_010645.1 Gene remnant. Similar to an internal region of Ralstonia solanacearum tyrosine recombinase XerD SWALL:XERD_RALSO (SWALL:Q8XWD0) (308 aa) fasta scores: E(): 9.4, 45.94 38d in 37 aa; tyrosine recombinase >2289737 6265816 BAV2138 Bordetella avium 197N tyrosine recombinase YP_786655.1 2289594 R 360910 CDS YP_786656.1 187478632 6265817 2289842..2290123 1 NC_010645.1 . Seems to be unique to the Bordetellae.; hypothetical protein 2290123 6265817 BAV2139 Bordetella avium 197N hypothetical protein YP_786656.1 2289842 D 360910 CDS YP_786657.1 187478633 6265818 2290189..2290863 1 NC_010645.1 B-type cytochrome 2290863 6265818 BAV2140 Bordetella avium 197N B-type cytochrome YP_786657.1 2290189 D 360910 CDS YP_786658.1 187478634 6265819 complement(2290930..2291373) 1 NC_010645.1 cytochrome c' 2291373 6265819 BAV2141 Bordetella avium 197N cytochrome c' YP_786658.1 2290930 R 360910 CDS YP_786659.1 187478635 6265820 complement(2291435..2292811) 1 NC_010645.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2292811 purB 6265820 purB Bordetella avium 197N adenylosuccinate lyase YP_786659.1 2291435 R 360910 CDS YP_786660.1 187478636 6267594 2292956..2293564 1 NC_010645.1 glutathione transferase 2293564 6267594 BAV2143 Bordetella avium 197N glutathione transferase YP_786660.1 2292956 D 360910 CDS YP_786661.1 187478637 6265821 complement(2293575..2294378) 1 NC_010645.1 membrane protein 2294378 6265821 BAV2144 Bordetella avium 197N membrane protein YP_786661.1 2293575 R 360910 CDS YP_786662.1 187478638 6265822 complement(2294458..2295570) 1 NC_010645.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2295570 mnmA 6265822 mnmA Bordetella avium 197N tRNA-specific 2-thiouridylase MnmA YP_786662.1 2294458 R 360910 CDS YP_786663.1 187478639 6267423 2296841..2297149 1 NC_010645.1 Similar to C-terminal of Escherichia coli NAD(P) transhydrogenase subunit alpha PntA SWALL:PNTA_ECOLI (SWALL:P07001); NAD(P) transhydrogenase subunit alpha part 2 2297149 nntA2 6267423 nntA2 Bordetella avium 197N NAD(P) transhydrogenase subunit alpha part 2 YP_786663.1 2296841 D 360910 CDS YP_786664.1 187478640 6267424 2297146..2298579 1 NC_010645.1 NAD(P) transhydrogenase subunit beta 2298579 nntB 6267424 nntB Bordetella avium 197N NAD(P) transhydrogenase subunit beta YP_786664.1 2297146 D 360910 CDS YP_786665.1 187478641 6267425 complement(2298576..2299811) 1 NC_010645.1 glycolate oxidase iron-sulfur subunit 2299811 glcF 6267425 glcF Bordetella avium 197N glycolate oxidase iron-sulfur subunit YP_786665.1 2298576 R 360910 CDS YP_786666.1 187478642 6267074 complement(2299822..2300925) 1 NC_010645.1 glycolate oxidase FAD binding subunit 2300925 glcE 6267074 glcE Bordetella avium 197N glycolate oxidase FAD binding subunit YP_786666.1 2299822 R 360910 CDS YP_786667.1 187478643 6267073 complement(2300935..2302434) 1 NC_010645.1 Also similar to the upstream CDS, BAV2152, (30.947 identity).; glycolate oxidase subunit 2302434 glcD1 6267073 glcD1 Bordetella avium 197N glycolate oxidase subunit YP_786667.1 2300935 R 360910 CDS YP_786668.1 187478644 6267071 complement(2302606..2304015) 1 NC_010645.1 Also similar to the downstream CDS, BAV2151,(30.947 38dentity).; glycolate oxidase subunit 2304015 glcD2 6267071 glcD2 Bordetella avium 197N glycolate oxidase subunit YP_786668.1 2302606 R 360910 CDS YP_786669.1 187478645 6267072 complement(2304208..>2305281) 1 NC_010645.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase >2305281 aroG2 6267072 aroG2 Bordetella avium 197N phospho-2-dehydro-3-deoxyheptonate aldolase YP_786669.1 2304208 R 360910 CDS YP_786670.1 187478646 6266659 complement(2305544..2307004) 1 NC_010645.1 protease, modulator of DNA gyrase 2307004 tldD 6266659 tldD Bordetella avium 197N protease, modulator of DNA gyrase YP_786670.1 2305544 R 360910 CDS YP_786671.1 187478647 6267813 2307550..2307912 1 NC_010645.1 DNA-binding protein (histone) 2307912 bph3 6267813 bph3 Bordetella avium 197N DNA-binding protein (histone) YP_786671.1 2307550 D 360910 CDS YP_786672.1 187478648 6266726 complement(2307973..2308617) 1 NC_010645.1 hypothetical protein 2308617 6266726 BAV2156 Bordetella avium 197N hypothetical protein YP_786672.1 2307973 R 360910 CDS YP_786673.1 187478649 6265823 2308770..2311466 1 NC_010645.1 aminopeptidase N 2311466 pepN 6265823 pepN Bordetella avium 197N aminopeptidase N YP_786673.1 2308770 D 360910 CDS YP_786674.1 187478650 6267501 2311475..2312491 1 NC_010645.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 2312491 fbp 6267501 fbp Bordetella avium 197N fructose-1,6-bisphosphatase YP_786674.1 2311475 D 360910 CDS YP_786675.1 187478651 6265825 complement(2322767..2322988) 1 NC_010645.1 lipoprotein 2322988 6265825 BAV2161 Bordetella avium 197N lipoprotein YP_786675.1 2322767 R 360910 CDS YP_786676.1 187478652 6265826 complement(2323478..2324887) 1 NC_010645.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2324887 thrC 6265826 thrC Bordetella avium 197N threonine synthase YP_786676.1 2323478 R 360910 CDS YP_786677.1 187478653 6267808 complement(2324884..2326188) 1 NC_010645.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 2326188 hom 6267808 hom Bordetella avium 197N homoserine dehydrogenase YP_786677.1 2324884 R 360910 CDS YP_786678.1 187478654 6267192 complement(2326185..2327372) 1 NC_010645.1 aminotransferase 2327372 6267192 BAV2164 Bordetella avium 197N aminotransferase YP_786678.1 2326185 R 360910 CDS YP_786679.1 187478655 6265827 2327597..2328058 1 NC_010645.1 hypothetical protein 2328058 6265827 BAV2165 Bordetella avium 197N hypothetical protein YP_786679.1 2327597 D 360910 CDS YP_786680.1 187478656 6265828 2328055..2328519 1 NC_010645.1 antioxidant protein 2328519 6265828 BAV2166 Bordetella avium 197N antioxidant protein YP_786680.1 2328055 D 360910 CDS YP_786681.1 187478657 6265829 2328569..2330215 1 NC_010645.1 hypothetical protein 2330215 6265829 BAV2167 Bordetella avium 197N hypothetical protein YP_786681.1 2328569 D 360910 CDS YP_786682.1 187478658 6265830 2330366..2331337 1 NC_010645.1 Also similar to BAV0651, (48.318 38d.); 4-hydroxythreonine-4-phosphate dehydrogenase 2331337 pdxA2 6265830 pdxA2 Bordetella avium 197N 4-hydroxythreonine-4-phosphate dehydrogenase YP_786682.1 2330366 D 360910 CDS YP_786683.1 187478659 6267494 2331424..2332380 1 NC_010645.1 membrane protein 2332380 6267494 BAV2169 Bordetella avium 197N membrane protein YP_786683.1 2331424 D 360910 CDS YP_786684.1 187478660 6265831 complement(2332435..2333808) 1 NC_010645.1 unwinds double stranded DNA; replicative DNA helicase 2333808 dnaB 6265831 dnaB Bordetella avium 197N replicative DNA helicase YP_786684.1 2332435 R 360910 CDS YP_786685.1 187478661 6266888 complement(2333805..>2334638) 1 NC_010645.1 hypothetical protein >2334638 6266888 BAV2171 Bordetella avium 197N hypothetical protein YP_786685.1 2333805 R 360910 CDS YP_786686.1 187478662 6265832 complement(2334751..2335206) 1 NC_010645.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 2335206 rplI 6265832 rplI Bordetella avium 197N 50S ribosomal protein L9 YP_786686.1 2334751 R 360910 CDS YP_786687.1 187478663 6267680 complement(2335221..2335493) 1 NC_010645.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 2335493 rpsR 6267680 rpsR Bordetella avium 197N 30S ribosomal protein S18 YP_786687.1 2335221 R 360910 CDS YP_786688.1 187478664 6267725 complement(2335586..2335909) 1 NC_010645.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 2335909 priB 6267725 priB Bordetella avium 197N primosomal replication protein N YP_786688.1 2335586 R 360910 CDS YP_786689.1 187478665 6267571 complement(2335962..2336336) 1 NC_010645.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2336336 rpsF 6267571 rpsF Bordetella avium 197N 30S ribosomal protein S6 YP_786689.1 2335962 R 360910 CDS YP_786690.1 187478666 6267714 complement(2336568..2337365) 1 NC_010645.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 2337365 6267714 BAV2176 Bordetella avium 197N putative GTP cyclohydrolase YP_786690.1 2336568 R 360910 CDS YP_786691.1 187478667 6265833 complement(2337515..2339377) 1 NC_010645.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2339377 dxs 6265833 dxs Bordetella avium 197N 1-deoxy-D-xylulose-5-phosphate synthase YP_786691.1 2337515 R 360910 CDS YP_786692.1 187478668 6266911 complement(2339420..2340331) 1 NC_010645.1 geranyltranstransferase 2340331 ispA 6266911 ispA Bordetella avium 197N geranyltranstransferase YP_786692.1 2339420 R 360910 CDS YP_786693.1 187478669 6267253 complement(2340340..2340576) 1 NC_010645.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 2340576 xseB 6267253 xseB Bordetella avium 197N exodeoxyribonuclease VII small subunit YP_786693.1 2340340 R 360910 CDS YP_786694.1 187478670 6267946 2340898..2342049 1 NC_010645.1 dioxygenase 2342049 6267946 BAV2180 Bordetella avium 197N dioxygenase YP_786694.1 2340898 D 360910 CDS YP_786695.1 187478671 6265834 2342169..2342738 1 NC_010645.1 hypothetical protein 2342738 6265834 BAV2181 Bordetella avium 197N hypothetical protein YP_786695.1 2342169 D 360910 CDS YP_786696.1 187478672 6265835 complement(2342779..2343621) 1 NC_010645.1 thiosulfate sulfurtransferase 2343621 6265835 BAV2182 Bordetella avium 197N thiosulfate sulfurtransferase YP_786696.1 2342779 R 360910 CDS YP_786697.1 187478673 6265836 complement(2343653..2344507) 1 NC_010645.1 membrane protein 2344507 6265836 BAV2183 Bordetella avium 197N membrane protein YP_786697.1 2343653 R 360910 CDS YP_786698.1 187478674 6265837 2344679..2345560 1 NC_010645.1 putative metalloprotease; heat shock protein HtpX 2345560 htpX 6265837 htpX Bordetella avium 197N heat shock protein HtpX YP_786698.1 2344679 D 360910 CDS YP_786699.1 187478675 6267217 complement(2345599..2347215) 1 NC_010645.1 hypothetical protein 2347215 6267217 BAV2185 Bordetella avium 197N hypothetical protein YP_786699.1 2345599 R 360910 CDS YP_786700.1 187478676 6265838 complement(2347432..2348421) 1 NC_010645.1 quinone oxidoreductase 2348421 hcz 6265838 hcz Bordetella avium 197N quinone oxidoreductase YP_786700.1 2347432 R 360910 CDS YP_786701.1 187478677 6267147 complement(2348453..2349403) 1 NC_010645.1 membrane protein 2349403 6267147 BAV2187 Bordetella avium 197N membrane protein YP_786701.1 2348453 R 360910 CDS YP_786702.1 187478678 6265839 2349503..2350360 1 NC_010645.1 membrane protein 2350360 6265839 BAV2188 Bordetella avium 197N membrane protein YP_786702.1 2349503 D 360910 CDS YP_786703.1 187478679 6265840 2350413..2350913 1 NC_010645.1 multiple antibiotic resistance protein 2350913 marR 6265840 marR Bordetella avium 197N multiple antibiotic resistance protein YP_786703.1 2350413 D 360910 CDS YP_786704.1 187478680 6267330 2351034..2352458 1 NC_010645.1 outer membrane multidrug efflux protein 2352458 6267330 BAV2190 Bordetella avium 197N outer membrane multidrug efflux protein YP_786704.1 2351034 D 360910 CDS YP_786705.1 187478681 6265841 2352468..2353655 1 NC_010645.1 multidrug resistance protein A 2353655 emrA 6265841 emrA Bordetella avium 197N multidrug resistance protein A YP_786705.1 2352468 D 360910 CDS YP_786706.1 187478682 6266920 2353652..2355238 1 NC_010645.1 multidrug resistance protein B 2355238 emrB 6266920 emrB Bordetella avium 197N multidrug resistance protein B YP_786706.1 2353652 D 360910 CDS YP_786707.1 187478683 6266921 complement(2355289..>2356356) 1 NC_010645.1 tartrate dehydrogenase >2356356 6266921 BAV2193 Bordetella avium 197N tartrate dehydrogenase YP_786707.1 2355289 R 360910 CDS YP_786708.1 187478684 6265842 complement(2356416..2357930) 1 NC_010645.1 GntR family transcriptional regulator 2357930 6265842 BAV2194 Bordetella avium 197N GntR family transcriptional regulator YP_786708.1 2356416 R 360910 CDS YP_786709.1 187478685 6265843 <2358318..2359889 1 NC_010645.1 ABC transporter substrate-binding protein 2359889 6265843 BAV2195 Bordetella avium 197N ABC transporter substrate-binding protein YP_786709.1 <2358318 D 360910 CDS YP_786710.1 187478686 6265844 2359981..2360997 1 NC_010645.1 ABC transporter permease 2360997 6265844 BAV2196 Bordetella avium 197N ABC transporter permease YP_786710.1 2359981 D 360910 CDS YP_786711.1 187478687 6265845 2360994..2361833 1 NC_010645.1 ABC transporter permease 2361833 6265845 BAV2197 Bordetella avium 197N ABC transporter permease YP_786711.1 2360994 D 360910 CDS YP_786712.1 187478688 6265846 2361844..2363484 1 NC_010645.1 ABC transporter ATP-binding protein 2363484 6265846 BAV2198 Bordetella avium 197N ABC transporter ATP-binding protein YP_786712.1 2361844 D 360910 CDS YP_786713.1 187478689 6265847 2363487..2364773 1 NC_010645.1 Also similar to BAV2548, (67.952 38d.); 4-aminobutyrate aminotransferase 2364773 goaG1 6265847 goaG1 Bordetella avium 197N 4-aminobutyrate aminotransferase YP_786713.1 2363487 D 360910 CDS YP_786714.1 187478690 6267106 2364792..2365082 1 NC_010645.1 hypothetical protein 2365082 6267106 BAV2200 Bordetella avium 197N hypothetical protein YP_786714.1 2364792 D 360910 CDS YP_786715.1 187478691 6265848 2365103..2366167 1 NC_010645.1 Also similar to BAV2226 (42.857 38d.); acetylpolyamine aminohydrolase 2366167 aphA1 6265848 aphA1 Bordetella avium 197N acetylpolyamine aminohydrolase YP_786715.1 2365103 D 360910 CDS YP_786716.1 187478692 6266632 2366183..2367445 1 NC_010645.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 2367445 amaB 6266632 amaB Bordetella avium 197N allantoate amidohydrolase YP_786716.1 2366183 D 360910 CDS YP_786717.1 187478693 6266618 2367442..2368329 1 NC_010645.1 membrane protein 2368329 6266618 BAV2203 Bordetella avium 197N membrane protein YP_786717.1 2367442 D 360910 CDS YP_786718.1 187478694 6265849 2368326..2369807 1 NC_010645.1 aldehyde dehydrogenase 2369807 aldH 6265849 aldH Bordetella avium 197N aldehyde dehydrogenase YP_786718.1 2368326 D 360910 CDS YP_786719.1 187478695 6266612 complement(2369857..>2370789) 1 NC_010645.1 2-hydroxyacid dehydrogenase >2370789 6266612 BAV2205 Bordetella avium 197N 2-hydroxyacid dehydrogenase YP_786719.1 2369857 R 360910 CDS YP_786720.1 187478696 6265850 2370903..2372276 1 NC_010645.1 aminotransferase 2372276 6265850 BAV2206 Bordetella avium 197N aminotransferase YP_786720.1 2370903 D 360910 CDS YP_786721.1 187478697 6265851 <2372642..2372896 1 NC_010645.1 Gene remnant. Similar to the N-terminal region of Human immunodeficiency virus viral infectivity factor ViF; hypothetical protein 2372896 6265851 BAV2206A Bordetella avium 197N hypothetical protein YP_786721.1 <2372642 D 360910 CDS YP_786722.1 187478698 6265852 2373001..2373732 1 NC_010645.1 hypothetical protein 2373732 6265852 BAV2207 Bordetella avium 197N hypothetical protein YP_786722.1 2373001 D 360910 CDS YP_786723.1 187478699 6265853 2373800..2375137 1 NC_010645.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 2375137 purD 6265853 purD Bordetella avium 197N phosphoribosylamine--glycine ligase YP_786723.1 2373800 D 360910 CDS YP_786724.1 187478700 6267596 2375134..2376048 1 NC_010645.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2376048 hemF 6267596 hemF Bordetella avium 197N coproporphyrinogen III oxidase YP_786724.1 2375134 D 360910 CDS YP_786725.1 187478701 6267156 2376045..2376638 1 NC_010645.1 nicotinate-nucleotide adenylyltransferase 2376638 nadD 6267156 nadD Bordetella avium 197N nicotinate-nucleotide adenylyltransferase YP_786725.1 2376045 D 360910 CDS YP_786726.1 187478702 6267410 2376676..2377086 1 NC_010645.1 hypothetical protein 2377086 6267410 BAV2211 Bordetella avium 197N hypothetical protein YP_786726.1 2376676 D 360910 CDS YP_786727.1 187478703 6265854 2377090..2377560 1 NC_010645.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 2377560 6265854 BAV2212 Bordetella avium 197N rRNA large subunit methyltransferase YP_786727.1 2377090 D 360910 CDS YP_786728.1 187478704 6265855 2377565..2378170 1 NC_010645.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 2378170 6265855 BAV2213 Bordetella avium 197N Maf-like protein YP_786728.1 2377565 D 360910 CDS YP_786729.1 187478705 6265856 complement(2378244..2378930) 1 NC_010645.1 hypothetical protein 2378930 6265856 BAV2214 Bordetella avium 197N hypothetical protein YP_786729.1 2378244 R 360910 CDS YP_786730.1 187478706 6265857 complement(2378932..2379558) 1 NC_010645.1 DNA-3-methyladenine glycosylase 2379558 6265857 BAV2215 Bordetella avium 197N DNA-3-methyladenine glycosylase YP_786730.1 2378932 R 360910 CDS YP_786731.1 187478707 6265858 complement(2379564..2380250) 1 NC_010645.1 hypothetical protein 2380250 6265858 BAV2216 Bordetella avium 197N hypothetical protein YP_786731.1 2379564 R 360910 CDS YP_786732.1 187478708 6265859 complement(2380247..2380801) 1 NC_010645.1 similar to the C-terminal region of Escherichia coli AdA regulatory protein; similar to the C-terminal region of BAV3120, Ada,(45.399 38d.); methylated-DNA--protein-cysteine methyltransferase 2380801 6265859 BAV2217 Bordetella avium 197N methylated-DNA--protein-cysteine methyltransferase YP_786732.1 2380247 R 360910 CDS YP_786733.1 187478709 6265860 complement(2380965..2382302) 1 NC_010645.1 aerobic c4-dicarboxylate transport protein 2382302 dctA 6265860 dctA Bordetella avium 197N aerobic c4-dicarboxylate transport protein YP_786733.1 2380965 R 360910 CDS YP_786734.1 187478710 6266868 <2382543..2384471 1 NC_010645.1 two component sensor kinase for C4-dicarboxylate transport 2384471 dctB 6266868 dctB Bordetella avium 197N two component sensor kinase for C4-dicarboxylate transport YP_786734.1 <2382543 D 360910 CDS YP_786735.1 187478711 6266869 2384471..2385862 1 NC_010645.1 two component response regulator for C4-dicarboxylate transport 2385862 dctD 6266869 dctD Bordetella avium 197N two component response regulator for C4-dicarboxylate transport YP_786735.1 2384471 D 360910 CDS YP_786736.1 187478712 6266870 complement(2385848..2386810) 1 NC_010645.1 threonine dehydratase catabolic 2386810 tdcB 6266870 tdcB Bordetella avium 197N threonine dehydratase catabolic YP_786736.1 2385848 R 360910 CDS YP_786737.1 187478713 6265861 complement(2387678..2388415) 1 NC_010645.1 metal dependent phosphohydrolase 2388415 6265861 BAV2223 Bordetella avium 197N metal dependent phosphohydrolase YP_786737.1 2387678 R 360910 CDS YP_786738.1 187478714 6265862 2388483..2390039 1 NC_010645.1 hypothetical protein 2390039 6265862 BAV2224 Bordetella avium 197N hypothetical protein YP_786738.1 2388483 D 360910 CDS YP_786739.1 187478715 6265863 2390331..2391641 1 NC_010645.1 transporter 2391641 6265863 BAV2225 Bordetella avium 197N transporter YP_786739.1 2390331 D 360910 CDS YP_786740.1 187478716 6265864 2391658..2392677 1 NC_010645.1 Also similar to BAV2201 (42.857 38d.); acetylpolyamine aminohydrolase 2392677 aphA2 6265864 aphA2 Bordetella avium 197N acetylpolyamine aminohydrolase YP_786740.1 2391658 D 360910 CDS YP_786741.1 187478717 6266633 2393045..2394043 1 NC_010645.1 LysR family transcriptional regulator 2394043 6266633 BAV2227 Bordetella avium 197N LysR family transcriptional regulator YP_786741.1 2393045 D 360910 CDS YP_786742.1 187478718 6267955 2400733..2402196 1 NC_010645.1 ribonuclease G 2402196 cafA 6267955 cafA Bordetella avium 197N ribonuclease G YP_786742.1 2400733 D 360910 CDS YP_786743.1 187478719 6266751 complement(2402263..2404038) 1 NC_010645.1 lipid A export ABC transporter ATP-binding/permease 2404038 msbA 6266751 msbA Bordetella avium 197N lipid A export ABC transporter ATP-binding/permease YP_786743.1 2402263 R 360910 CDS YP_786744.1 187478720 6267390 2404136..2405104 1 NC_010645.1 ADP-heptose--LPS heptosyltransferase II 2405104 rfaF 6267390 rfaF Bordetella avium 197N ADP-heptose--LPS heptosyltransferase II YP_786744.1 2404136 D 360910 CDS YP_786745.1 187478721 6267640 2405118..2405882 1 NC_010645.1 membrane protein 2405882 6267640 BAV2231 Bordetella avium 197N membrane protein YP_786745.1 2405118 D 360910 CDS YP_786746.1 187478722 6265866 2405879..2406154 1 NC_010645.1 hypothetical protein 2406154 6265866 BAV2232 Bordetella avium 197N hypothetical protein YP_786746.1 2405879 D 360910 CDS YP_786747.1 187478723 6265867 complement(2406160..2407266) 1 NC_010645.1 Also similar to BAV2238 (27.027 38d.); lipopolysaccharide core biosynthesis glycosyl protein 2407266 rfaG 6265867 rfaG Bordetella avium 197N lipopolysaccharide core biosynthesis glycosyl protein YP_786747.1 2406160 R 360910 CDS YP_786748.1 187478724 6267641 complement(2407274..2407999) 1 NC_010645.1 lipopolysaccharide core oligosaccharide biosynthesis protein polysaccharide deacetylase 2407999 6267641 BAV2234 Bordetella avium 197N lipopolysaccharide core oligosaccharide biosynthesis protein polysaccharide deacetylase YP_786748.1 2407274 R 360910 CDS YP_786749.1 187478725 6265868 complement(2408027..>2409136) 1 NC_010645.1 lipopolysaccharide core biosynthesis glycosyl transferase >2409136 6265868 BAV2235 Bordetella avium 197N lipopolysaccharide core biosynthesis glycosyl transferase YP_786749.1 2408027 R 360910 CDS YP_786750.1 187478726 6265869 complement(2409133..2409891) 1 NC_010645.1 lipopolysaccharide core biosynthesis glycosyl transferase 2409891 waaE 6265869 waaE Bordetella avium 197N lipopolysaccharide core biosynthesis glycosyl transferase YP_786750.1 2409133 R 360910 CDS YP_786751.1 187478727 6267931 complement(2409888..2410736) 1 NC_010645.1 lipopolysaccharide core oligosaccharide biosynthesis protein 2410736 6267931 BAV2237 Bordetella avium 197N lipopolysaccharide core oligosaccharide biosynthesis protein YP_786751.1 2409888 R 360910 CDS YP_786752.1 187478728 6265870 complement(2410733..2411833) 1 NC_010645.1 Also similar to BAV2233 (27.027 38d.); lipopolysaccharide core biosynthesis glycosyl transferase 2411833 6265870 BAV2238 Bordetella avium 197N lipopolysaccharide core biosynthesis glycosyl transferase YP_786752.1 2410733 R 360910 CDS YP_786753.1 187478729 6265871 complement(2411833..2415324) 1 NC_010645.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 2415324 dnaE 6265871 dnaE Bordetella avium 197N DNA polymerase III subunit alpha YP_786753.1 2411833 R 360910 CDS YP_786754.1 187478730 6266889 2415463..2416362 1 NC_010645.1 aspartyl/asparaginyl beta-hydroxylase 2416362 6266889 BAV2240 Bordetella avium 197N aspartyl/asparaginyl beta-hydroxylase YP_786754.1 2415463 D 360910 CDS YP_786755.1 187478731 6265872 complement(2416420..2420298) 1 NC_010645.1 ATP-dependent helicase 2420298 hrpA 6265872 hrpA Bordetella avium 197N ATP-dependent helicase YP_786755.1 2416420 R 360910 CDS YP_786756.1 187478732 6267206 2420506..2421861 1 NC_010645.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 2421861 argA 6267206 argA Bordetella avium 197N N-acetylglutamate synthase YP_786756.1 2420506 D 360910 CDS YP_786757.1 187478733 6266641 2421971..2422243 1 NC_010645.1 hypothetical protein 2422243 6266641 BAV2243 Bordetella avium 197N hypothetical protein YP_786757.1 2421971 D 360910 CDS YP_786758.1 187478734 6265873 complement(2422369..2422869) 1 NC_010645.1 acetyltransferase 2422869 6265873 BAV2244 Bordetella avium 197N acetyltransferase YP_786758.1 2422369 R 360910 CDS YP_786759.1 187478735 6265874 complement(2422990..2423718) 1 NC_010645.1 phosphate transport system protein 2423718 phoU 6265874 phoU Bordetella avium 197N phosphate transport system protein YP_786759.1 2422990 R 360910 CDS YP_786760.1 187478736 6267534 complement(2423872..2424546) 1 NC_010645.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2424546 rpiA 6267534 rpiA Bordetella avium 197N ribose-5-phosphate isomerase A YP_786760.1 2423872 R 360910 CDS YP_786761.1 187478737 6267673 complement(2424632..>2425876) 1 NC_010645.1 hypothetical protein >2425876 6267673 BAV2247 Bordetella avium 197N hypothetical protein YP_786761.1 2424632 R 360910 CDS YP_786762.1 187478738 6265875 2426071..2426760 1 NC_010645.1 hypothetical protein 2426760 6265875 BAV2248 Bordetella avium 197N hypothetical protein YP_786762.1 2426071 D 360910 CDS YP_786763.1 187478739 6265876 complement(2426761..2427453) 1 NC_010645.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 2427453 6265876 BAV2249 Bordetella avium 197N 3-methyladenine DNA glycosylase YP_786763.1 2426761 R 360910 CDS YP_786764.1 187478740 6265877 complement(2427455..2427805) 1 NC_010645.1 arsenate reductase 2427805 6265877 BAV2250 Bordetella avium 197N arsenate reductase YP_786764.1 2427455 R 360910 CDS YP_786765.1 187478741 6265878 complement(2427802..2428608) 1 NC_010645.1 putrescine ABC transporter permease 2428608 potI 6265878 potI Bordetella avium 197N putrescine ABC transporter permease YP_786765.1 2427802 R 360910 CDS YP_786766.1 187478742 6267555 complement(2428605..2429507) 1 NC_010645.1 putrescine ABC transporter permease 2429507 potH 6267555 potH Bordetella avium 197N putrescine ABC transporter permease YP_786766.1 2428605 R 360910 CDS YP_786767.1 187478743 6267554 complement(2429504..2430631) 1 NC_010645.1 putrescine ABC transporter ATP-binding protein 2430631 potG 6267554 potG Bordetella avium 197N putrescine ABC transporter ATP-binding protein YP_786767.1 2429504 R 360910 CDS YP_786768.1 187478744 6267553 complement(2430638..2431741) 1 NC_010645.1 putrescine ABC transporter substrate-binding protein 2431741 potF 6267553 potF Bordetella avium 197N putrescine ABC transporter substrate-binding protein YP_786768.1 2430638 R 360910 CDS YP_786769.1 187478745 6267552 complement(2431882..>2432580) 1 NC_010645.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase >2432580 6267552 BAV2255 Bordetella avium 197N 3-deoxy-D-manno-octulosonic-acid kinase YP_786769.1 2431882 R 360910 CDS YP_786770.1 187478746 6265879 complement(2432570..2432995) 1 NC_010645.1 hemoglobin-like protein 2432995 6265879 BAV2256 Bordetella avium 197N hemoglobin-like protein YP_786770.1 2432570 R 360910 CDS YP_786771.1 187478747 6265880 complement(2432995..2435511) 1 NC_010645.1 membrane protein 2435511 6265880 BAV2257 Bordetella avium 197N membrane protein YP_786771.1 2432995 R 360910 CDS YP_786772.1 187478748 6265881 2435622..2436596 1 NC_010645.1 TRAP family transport system, substrate-binding transport protein 2436596 6265881 BAV2258 Bordetella avium 197N TRAP family transport system, substrate-binding transport protein YP_786772.1 2435622 D 360910 CDS YP_786773.1 187478749 6265882 2436656..2437156 1 NC_010645.1 TRAP family transport system, permease 2437156 6265882 BAV2259 Bordetella avium 197N TRAP family transport system, permease YP_786773.1 2436656 D 360910 CDS YP_786774.1 187478750 6265883 2437190..2438467 1 NC_010645.1 TRAP family transport system, permease 2438467 6265883 BAV2260 Bordetella avium 197N TRAP family transport system, permease YP_786774.1 2437190 D 360910 CDS YP_786775.1 187478751 6265884 2438773..2440002 1 NC_010645.1 formamidase 2440002 fmdA 6265884 fmdA Bordetella avium 197N formamidase YP_786775.1 2438773 D 360910 CDS YP_786776.1 187478752 6267021 2440013..2440336 1 NC_010645.1 hypothetical protein 2440336 fmdB 6267021 fmdB Bordetella avium 197N hypothetical protein YP_786776.1 2440013 D 360910 CDS YP_786777.1 187478753 6267022 2440721..2441719 1 NC_010645.1 tellurite resistance protein 2441719 tehA 6267022 tehA Bordetella avium 197N tellurite resistance protein YP_786777.1 2440721 D 360910 CDS YP_786778.1 187478754 6267890 complement(2442221..2442880) 1 NC_010645.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 2442880 trpF 6267890 trpF Bordetella avium 197N N-(5'-phosphoribosyl)anthranilate isomerase YP_786778.1 2442221 R 360910 CDS YP_786779.1 187478755 6267897 complement(2442927..2443730) 1 NC_010645.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2443730 truA 6267897 truA Bordetella avium 197N tRNA pseudouridine synthase A YP_786779.1 2442927 R 360910 CDS YP_786780.1 187478756 6266674 complement(2443737..2445251) 1 NC_010645.1 membrane protein 2445251 6266674 BAV2266 Bordetella avium 197N membrane protein YP_786780.1 2443737 R 360910 CDS YP_786781.1 187478757 6265885 complement(2445432..2446562) 1 NC_010645.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 2446562 asd 6265885 asd Bordetella avium 197N aspartate-semialdehyde dehydrogenase YP_786781.1 2445432 R 360910 CDS YP_786782.1 187478758 6266667 complement(2446695..2447771) 1 NC_010645.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2447771 leuB 6266667 leuB Bordetella avium 197N 3-isopropylmalate dehydrogenase YP_786782.1 2446695 R 360910 CDS YP_786783.1 187478759 6267288 complement(2447827..2448477) 1 NC_010645.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2448477 leuD 6267288 leuD Bordetella avium 197N isopropylmalate isomerase small subunit YP_786783.1 2447827 R 360910 CDS YP_786784.1 187478760 6267292 complement(2448491..2449948) 1 NC_010645.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2449948 leuC2 6267292 leuC2 Bordetella avium 197N isopropylmalate isomerase large subunit YP_786784.1 2448491 R 360910 CDS YP_786785.1 187478761 6267290 complement(2450038..>2450226) 1 NC_010645.1 ; Doubtful CDS.; hypothetical protein >2450226 6267290 BAV2271 Bordetella avium 197N hypothetical protein YP_786785.1 2450038 R 360910 CDS YP_786786.1 187478762 6265886 complement(2450279..2451097) 1 NC_010645.1 exported peptidase 2451097 6265886 BAV2272 Bordetella avium 197N exported peptidase YP_786786.1 2450279 R 360910 CDS YP_786787.1 187478763 6265887 complement(2451112..2452170) 1 NC_010645.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2452170 aroC 6265887 aroC Bordetella avium 197N chorismate synthase YP_786787.1 2451112 R 360910 CDS YP_786788.1 187478764 6266656 complement(2452209..>2453573) 1 NC_010645.1 ; Similar to the C_terminal region of many CDSs including Pseudomonas aeruginosa hypothetical signaling protein pa1727 SWALL:YH27_PSEAE (SWALL:Q9I310) (685 aa) fasta scores: E(): 5e-46, 35.98 38d in 453 aa; signaling protein >2453573 6266656 BAV2274 Bordetella avium 197N signaling protein YP_786788.1 2452209 R 360910 CDS YP_786789.1 187478765 6265888 2453789..2456521 1 NC_010645.1 two-component sensor kinase 2456521 6265888 BAV2275 Bordetella avium 197N two-component sensor kinase YP_786789.1 2453789 D 360910 CDS YP_786790.1 187478766 6265889 complement(2456534..2457259) 1 NC_010645.1 two-component response regulator 2457259 6265889 BAV2276 Bordetella avium 197N two-component response regulator YP_786790.1 2456534 R 360910 CDS YP_786791.1 187478767 6265890 complement(2457410..2458882) 1 NC_010645.1 hypothetical protein 2458882 6265890 BAV2277 Bordetella avium 197N hypothetical protein YP_786791.1 2457410 R 360910 CDS YP_786792.1 187478768 6265891 2459099..2460415 1 NC_010645.1 Similar to over its N-terminal region to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 tRNA processing ribonuclease bn Rbn SWALL:RBN_ECOLI (SWALL:P32146) (290 aa) fasta scores: E(): 1.5e-34, 38.6 38d in 272 aa; membrane-associated ribonuclease 2460415 6265891 BAV2278 Bordetella avium 197N membrane-associated ribonuclease YP_786792.1 2459099 D 360910 CDS YP_786793.1 187478769 6265892 2460480..2460935 1 NC_010645.1 hypothetical protein 2460935 6265892 BAV2279 Bordetella avium 197N hypothetical protein YP_786793.1 2460480 D 360910 CDS YP_786794.1 187478770 6265893 complement(2460978..2461961) 1 NC_010645.1 tRNA-dihydrouridine synthase A 2461961 dusA 6265893 dusA Bordetella avium 197N tRNA-dihydrouridine synthase A YP_786794.1 2460978 R 360910 CDS YP_786795.1 187478771 6266908 2462110..2463078 1 NC_010645.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 2463078 thrB 6266908 thrB Bordetella avium 197N homoserine kinase YP_786795.1 2462110 D 360910 CDS YP_786796.1 187478772 6267807 2463145..2463948 1 NC_010645.1 membrane protein 2463948 6267807 BAV2282 Bordetella avium 197N membrane protein YP_786796.1 2463145 D 360910 CDS YP_786797.1 187478773 6265894 complement(2464185..2465036) 1 NC_010645.1 pilus assembly protein 2465036 6265894 BAV2283 Bordetella avium 197N pilus assembly protein YP_786797.1 2464185 R 360910 CDS YP_786798.1 187478774 6265895 complement(2465033..2465881) 1 NC_010645.1 pilus assembly protein 2465881 6265895 BAV2284 Bordetella avium 197N pilus assembly protein YP_786798.1 2465033 R 360910 CDS YP_786799.1 187478775 6265896 complement(2465878..2467404) 1 NC_010645.1 pilus assembly protein 2467404 6265896 BAV2285 Bordetella avium 197N pilus assembly protein YP_786799.1 2465878 R 360910 CDS YP_786800.1 187478776 6265897 complement(2467404..2468684) 1 NC_010645.1 pilus assembly protein 2468684 6265897 BAV2286 Bordetella avium 197N pilus assembly protein YP_786800.1 2467404 R 360910 CDS YP_786801.1 187478777 6265898 complement(2468681..2469493) 1 NC_010645.1 pilus assembly protein 2469493 6265898 BAV2287 Bordetella avium 197N pilus assembly protein YP_786801.1 2468681 R 360910 CDS YP_786802.1 187478778 6265899 complement(2469486..2470064) 1 NC_010645.1 pilus assembly protein 2470064 6265899 BAV2288 Bordetella avium 197N pilus assembly protein YP_786802.1 2469486 R 360910 CDS YP_786803.1 187478779 6265900 complement(2470057..2470794) 1 NC_010645.1 pilus assembly protein 2470794 6265900 BAV2289 Bordetella avium 197N pilus assembly protein YP_786803.1 2470057 R 360910 CDS YP_786804.1 187478780 6265901 complement(2470791..2472131) 1 NC_010645.1 pilus assembly protein 2472131 6265901 BAV2290 Bordetella avium 197N pilus assembly protein YP_786804.1 2470791 R 360910 CDS YP_786805.1 187478781 6265902 complement(2472128..2472400) 1 NC_010645.1 type IV pilin 2472400 6265902 BAV2291 Bordetella avium 197N type IV pilin YP_786805.1 2472128 R 360910 CDS YP_786806.1 187478782 6265903 2472634..2473041 1 NC_010645.1 heat shock protein 2473041 6265903 BAV2292 Bordetella avium 197N heat shock protein YP_786806.1 2472634 D 360910 CDS YP_786807.1 187478783 6265904 2473038..2475365 1 NC_010645.1 ATP-dependent protease La 2475365 capR 6265904 capR Bordetella avium 197N ATP-dependent protease La YP_786807.1 2473038 D 360910 CDS YP_786808.1 187478784 6266753 complement(2475680..2475811) 1 NC_010645.1 Also similar to BAV2317 (44.186 38d.); entericidin B 2475811 ecnB 6266753 ecnB Bordetella avium 197N entericidin B YP_786808.1 2475680 R 360910 CDS YP_786809.1 187478785 6266915 complement(2475831..2476526) 1 NC_010645.1 hydrolase 2476526 6266915 BAV2295 Bordetella avium 197N hydrolase YP_786809.1 2475831 R 360910 CDS YP_786810.1 187478786 6265905 complement(2476771..2477304) 1 NC_010645.1 inorganic pyrophosphatase 2477304 ppa 6265905 ppa Bordetella avium 197N inorganic pyrophosphatase YP_786810.1 2476771 R 360910 CDS YP_786811.1 187478787 6267557 complement(2477340..2478896) 1 NC_010645.1 protoheme IX synthesis protein 2478896 hemY 6267557 hemY Bordetella avium 197N protoheme IX synthesis protein YP_786811.1 2477340 R 360910 CDS YP_786812.1 187478788 6267163 complement(2478901..2480052) 1 NC_010645.1 uroporphyrin-III C-methyltransferase 2480052 hemX 6267163 hemX Bordetella avium 197N uroporphyrin-III C-methyltransferase YP_786812.1 2478901 R 360910 CDS YP_786813.1 187478789 6267162 complement(2480089..2480889) 1 NC_010645.1 uroporphyrinogen-III synthase 2480889 hemD 6267162 hemD Bordetella avium 197N uroporphyrinogen-III synthase YP_786813.1 2480089 R 360910 CDS YP_786814.1 187478790 6267154 complement(2480886..>2481830) 1 NC_010645.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase >2481830 hemC 6267154 hemC Bordetella avium 197N porphobilinogen deaminase YP_786814.1 2480886 R 360910 CDS YP_786815.1 187478791 6267152 complement(2481943..>2482671) 1 NC_010645.1 membrane protein >2482671 6267152 BAV2301 Bordetella avium 197N membrane protein YP_786815.1 2481943 R 360910 CDS YP_786816.1 187478792 6265906 complement(2482797..2483495) 1 NC_010645.1 membrane protein 2483495 6265906 BAV2302 Bordetella avium 197N membrane protein YP_786816.1 2482797 R 360910 CDS YP_786817.1 187478793 6265907 complement(2483774..2484655) 1 NC_010645.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 2484655 sucD 6265907 sucD Bordetella avium 197N succinyl-CoA synthetase subunit alpha YP_786817.1 2483774 R 360910 CDS YP_786818.1 187478794 6267778 complement(2484677..2485837) 1 NC_010645.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2485837 sucC 6267778 sucC Bordetella avium 197N succinyl-CoA synthetase subunit beta YP_786818.1 2484677 R 360910 CDS YP_786819.1 187478795 6267777 complement(2485848..2486450) 1 NC_010645.1 hypothetical protein 2486450 6267777 BAV2305 Bordetella avium 197N hypothetical protein YP_786819.1 2485848 R 360910 CDS YP_786820.1 187478796 6265908 complement(2486668..2488968) 1 NC_010645.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 2488968 metE 6265908 metE Bordetella avium 197N 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase YP_786820.1 2486668 R 360910 CDS YP_786821.1 187478797 6267336 2489108..2490028 1 NC_010645.1 LysR family transcriptional regulator 2490028 metR 6267336 metR Bordetella avium 197N LysR family transcriptional regulator YP_786821.1 2489108 D 360910 CDS YP_786822.1 187478798 6267344 complement(2490041..2490580) 1 NC_010645.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2490580 recX 6267344 recX Bordetella avium 197N recombination regulator RecX YP_786822.1 2490041 R 360910 CDS YP_786823.1 187478799 6267635 complement(2490605..2491666) 1 NC_010645.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2491666 recA 6267635 recA Bordetella avium 197N recombinase A YP_786823.1 2490605 R 360910 CDS YP_786824.1 187478800 6267627 2491999..2492694 1 NC_010645.1 two-component system response regulator 2492694 6267627 BAV2310 Bordetella avium 197N two-component system response regulator YP_786824.1 2491999 D 360910 CDS YP_786825.1 187478801 6265909 2492798..2494183 1 NC_010645.1 two-component system sensor kinase 2494183 6265909 BAV2311 Bordetella avium 197N two-component system sensor kinase YP_786825.1 2492798 D 360910 CDS YP_786826.1 187478802 6265910 2494363..2496033 1 NC_010645.1 transporter 2496033 6265910 BAV2312 Bordetella avium 197N transporter YP_786826.1 2494363 D 360910 CDS YP_786827.1 187478803 6265911 2496560..2497462 1 NC_010645.1 Required for efficient pilin antigenic variation; recombination associated protein 2497462 rdgC 6265911 rdgC Bordetella avium 197N recombination associated protein YP_786827.1 2496560 D 360910 CDS YP_786828.1 187478804 6267626 complement(2497508..2498803) 1 NC_010645.1 catalyzes the conversion of carbamoyl phosphate and aspartate to form N-carbamoyl aspartate; aspartate carbamoyltransferase 2498803 pyrB 6267626 pyrB Bordetella avium 197N aspartate carbamoyltransferase YP_786828.1 2497508 R 360910 CDS YP_786829.1 187478805 6267607 complement(2498888..2499250) 1 NC_010645.1 membrane protein 2499250 6267607 BAV2315 Bordetella avium 197N membrane protein YP_786829.1 2498888 R 360910 CDS YP_786830.1 187478806 6265912 complement(2499260..2499688) 1 NC_010645.1 . Seems to be unique to the Bordetellae.; lipoprotein 2499688 6265912 BAV2316 Bordetella avium 197N lipoprotein YP_786830.1 2499260 R 360910 CDS YP_786831.1 187478807 6265913 complement(2499786..2499917) 1 NC_010645.1 Also similar to BAV2294 (44.186 38d.); entericidin A 2499917 ecnA 6265913 ecnA Bordetella avium 197N entericidin A YP_786831.1 2499786 R 360910 CDS YP_786832.1 187478808 6266914 complement(2500056..2500394) 1 NC_010645.1 . Seems to be unique to the Bordetellae.; hypothetical protein 2500394 6266914 BAV2318 Bordetella avium 197N hypothetical protein YP_786832.1 2500056 R 360910 CDS YP_786833.1 187478809 6267874 complement(2500588..2500959) 1 NC_010645.1 hypothetical protein 2500959 6267874 BAV2319 Bordetella avium 197N hypothetical protein YP_786833.1 2500588 R 360910 CDS YP_786834.1 187478810 6265915 2501111..2502547 1 NC_010645.1 GntR family transcriptional regulator 2502547 6265915 BAV2320 Bordetella avium 197N GntR family transcriptional regulator YP_786834.1 2501111 D 360910 CDS YP_786835.1 187478811 6265916 complement(2502652..2502897) 1 NC_010645.1 . Seems to be unique to the Bordetellae.; hypothetical protein 2502897 6265916 BAV2321 Bordetella avium 197N hypothetical protein YP_786835.1 2502652 R 360910 CDS YP_786836.1 187478812 6265917 2503058..2503369 1 NC_010645.1 lipoprotein 2503369 6265917 BAV2322 Bordetella avium 197N lipoprotein YP_786836.1 2503058 D 360910 CDS YP_786837.1 187478813 6265918 <2503642..2503776 1 NC_010645.1 hypothetical protein 2503776 6265918 BAV2323 Bordetella avium 197N hypothetical protein YP_786837.1 <2503642 D 360910 CDS YP_786838.1 187478814 6265919 complement(2503755..2504522) 1 NC_010645.1 metal-dependent phosphohydrolase 2504522 6265919 BAV2324 Bordetella avium 197N metal-dependent phosphohydrolase YP_786838.1 2503755 R 360910 CDS YP_786839.1 187478815 6265920 2504585..2504845 1 NC_010645.1 hypothetical protein 2504845 6265920 BAV2325 Bordetella avium 197N hypothetical protein YP_786839.1 2504585 D 360910 CDS YP_786840.1 187478816 6265921 2505452..2506171 1 NC_010645.1 membrane protein 2506171 6265921 BAV2326 Bordetella avium 197N membrane protein YP_786840.1 2505452 D 360910 CDS YP_786841.1 187478817 6265922 complement(2506304..2506513) 1 NC_010645.1 Also similar to BAV1492 (80.303 38d.), BAV1494 (70.769 38d.), BAV2092 (62.903 0d.) and BAV3424 (58.730 id.); cold shock protein 2506513 cspA3 6265922 cspA3 Bordetella avium 197N cold shock protein YP_786841.1 2506304 R 360910 CDS YP_786842.1 187478818 6266816 complement(2506664..2507092) 1 NC_010645.1 hypothetical protein 2507092 6266816 BAV2328 Bordetella avium 197N hypothetical protein YP_786842.1 2506664 R 360910 CDS YP_786843.1 187478819 6267875 complement(2507399..2509579) 1 NC_010645.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 2509579 rpoD 6267875 rpoD Bordetella avium 197N RNA polymerase sigma factor RpoD YP_786843.1 2507399 R 360910 CDS YP_786844.1 187478820 6267707 complement(2510416..2512440) 1 NC_010645.1 DNA primase 2512440 dnaG 6267707 dnaG Bordetella avium 197N DNA primase YP_786844.1 2510416 R 360910 CDS YP_786845.1 187478821 6266891 complement(2512458..2512670) 1 NC_010645.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 2512670 rpsU 6266891 rpsU Bordetella avium 197N 30S ribosomal protein S21 YP_786845.1 2512458 R 360910 CDS YP_786846.1 187478822 6267728 complement(2512980..2513519) 1 NC_010645.1 xanthine-guanine phosphoribosyltransferase 2513519 gpt 6267728 gpt Bordetella avium 197N xanthine-guanine phosphoribosyltransferase YP_786846.1 2512980 R 360910 CDS YP_786847.1 187478823 6267113 complement(2513646..2514941) 1 NC_010645.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 2514941 adeK 6267113 adeK Bordetella avium 197N adenylosuccinate synthetase YP_786847.1 2513646 R 360910 CDS YP_786848.1 187478824 6266600 complement(2515017..2516174) 1 NC_010645.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 2516174 hisZ 6266600 hisZ Bordetella avium 197N ATP phosphoribosyltransferase regulatory subunit YP_786848.1 2515017 R 360910 CDS YP_786849.1 187478825 6267181 complement(2516544..2517431) 1 NC_010645.1 HflC protein 2517431 hflC 6267181 hflC Bordetella avium 197N HflC protein YP_786849.1 2516544 R 360910 CDS YP_786850.1 187478826 6267164 complement(2517450..2518751) 1 NC_010645.1 HflK protein 2518751 hflK 6267164 hflK Bordetella avium 197N HflK protein YP_786850.1 2517450 R 360910 CDS YP_786851.1 187478827 6267165 complement(2518717..2519823) 1 NC_010645.1 GTP-binding protein 2519823 hflX 6267165 hflX Bordetella avium 197N GTP-binding protein YP_786851.1 2518717 R 360910 CDS YP_786852.1 187478828 6267166 complement(2519911..2520147) 1 NC_010645.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 2520147 hfq 6267166 hfq Bordetella avium 197N RNA-binding protein Hfq YP_786852.1 2519911 R 360910 CDS YP_786853.1 187478829 6267167 complement(2520308..2521384) 1 NC_010645.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2521384 hisC2 6267167 hisC2 Bordetella avium 197N histidinol-phosphate aminotransferase YP_786853.1 2520308 R 360910 CDS YP_786854.1 187478830 6267172 complement(2521381..>2522736) 1 NC_010645.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA >2522736 engA 6267172 engA Bordetella avium 197N GTP-binding protein EngA YP_786854.1 2521381 R 360910 CDS YP_786855.1 187478831 6266922 complement(2522763..2523923) 1 NC_010645.1 lipoprotein 2523923 6266922 BAV2341 Bordetella avium 197N lipoprotein YP_786855.1 2522763 R 360910 CDS YP_786856.1 187478832 6265924 complement(2523926..2524564) 1 NC_010645.1 membrane protein 2524564 6265924 BAV2342 Bordetella avium 197N membrane protein YP_786856.1 2523926 R 360910 CDS YP_786857.1 187478833 6265925 complement(2524567..2525853) 1 NC_010645.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2525853 hisS 6265925 hisS Bordetella avium 197N histidyl-tRNA synthetase YP_786857.1 2524567 R 360910 CDS YP_786858.1 187478834 6267180 complement(2525900..2527186) 1 NC_010645.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2527186 ispG 6267180 ispG Bordetella avium 197N 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_786858.1 2525900 R 360910 CDS YP_786859.1 187478835 6267059 complement(2527199..2527687) 1 NC_010645.1 membrane protein 2527687 6267059 BAV2345 Bordetella avium 197N membrane protein YP_786859.1 2527199 R 360910 CDS YP_786860.1 187478836 6265926 complement(2527684..2528832) 1 NC_010645.1 hypothetical protein 2528832 6265926 BAV2346 Bordetella avium 197N hypothetical protein YP_786860.1 2527684 R 360910 CDS YP_786861.1 187478837 6265927 complement(2528868..2529293) 1 NC_010645.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2529293 ndk 6265927 ndk Bordetella avium 197N nucleoside diphosphate kinase YP_786861.1 2528868 R 360910 CDS YP_786862.1 187478838 6267419 2529609..2532494 1 NC_010645.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 2532494 valS 6267419 valS Bordetella avium 197N valyl-tRNA synthetase YP_786862.1 2529609 D 360910 CDS YP_786863.1 187478839 6267926 complement(2532874..2533686) 1 NC_010645.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2533686 trmD 6267926 trmD Bordetella avium 197N tRNA (guanine-N(1)-)-methyltransferase YP_786863.1 2532874 R 360910 CDS YP_786864.1 187478840 6267830 complement(2533686..2534258) 1 NC_010645.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 2534258 rimM 6267830 rimM Bordetella avium 197N 16S rRNA-processing protein RimM YP_786864.1 2533686 R 360910 CDS YP_786865.1 187478841 6267660 complement(2534459..2534578) 1 NC_010645.1 hypothetical protein 2534578 6267660 BAV2351 Bordetella avium 197N hypothetical protein YP_786865.1 2534459 R 360910 CDS YP_786866.1 187478842 6265928 complement(2534586..2534846) 1 NC_010645.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2534846 rpsP 6265928 rpsP Bordetella avium 197N 30S ribosomal protein S16 YP_786866.1 2534586 R 360910 CDS YP_786867.1 187478843 6267723 2534940..2535068 1 NC_010645.1 hypothetical protein 2535068 6267723 BAV2353 Bordetella avium 197N hypothetical protein YP_786867.1 2534940 D 360910 CDS YP_786868.1 187478844 6265929 2535185..2535796 1 NC_010645.1 hypothetical protein 2535796 6265929 BAV2354 Bordetella avium 197N hypothetical protein YP_786868.1 2535185 D 360910 CDS YP_786869.1 187478845 6265930 complement(2535897..2536148) 1 NC_010645.1 hypothetical protein 2536148 6265930 BAV2355 Bordetella avium 197N hypothetical protein YP_786869.1 2535897 R 360910 CDS YP_786870.1 187478846 6265931 complement(2536135..2538756) 1 NC_010645.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2538756 alaS 6265931 alaS Bordetella avium 197N alanyl-tRNA synthetase YP_786870.1 2536135 R 360910 CDS YP_786871.1 187478847 6266611 complement(2538834..>2539832) 1 NC_010645.1 type IV pilus-associated protein >2539832 6266611 BAV2357 Bordetella avium 197N type IV pilus-associated protein YP_786871.1 2538834 R 360910 CDS YP_786872.1 187478848 6265932 complement(2539829..2540452) 1 NC_010645.1 type IV pilin subunit 2540452 6265932 BAV2358 Bordetella avium 197N type IV pilin subunit YP_786872.1 2539829 R 360910 CDS YP_786873.1 187478849 6265933 complement(2540449..2541549) 1 NC_010645.1 type IV pilus assembly protein 2541549 6265933 BAV2359 Bordetella avium 197N type IV pilus assembly protein YP_786873.1 2540449 R 360910 CDS YP_786874.1 187478850 6265934 complement(2541542..2543056) 1 NC_010645.1 type IV pilus assembly protein 2543056 6265934 BAV2360 Bordetella avium 197N type IV pilus assembly protein YP_786874.1 2541542 R 360910 CDS YP_786875.1 187478851 6265935 complement(2543049..2543471) 1 NC_010645.1 . Seems to be unique to the Bordetellae.; type IV pilus assembly protein 2543471 6265935 BAV2361 Bordetella avium 197N type IV pilus assembly protein YP_786875.1 2543049 R 360910 CDS YP_786876.1 187478852 6265936 complement(2543455..2544552) 1 NC_010645.1 . Seems to be unique to the Bordetellae.; type IV pilus assembly protein 2544552 6265936 BAV2362 Bordetella avium 197N type IV pilus assembly protein YP_786876.1 2543455 R 360910 CDS YP_786877.1 187478853 6265937 complement(2544545..2546107) 1 NC_010645.1 type IV pilus assembly protein 2546107 6265937 BAV2363 Bordetella avium 197N type IV pilus assembly protein YP_786877.1 2544545 R 360910 CDS YP_786878.1 187478854 6265938 complement(2546104..2546898) 1 NC_010645.1 type IV pilus assembly protein 2546898 6265938 BAV2364 Bordetella avium 197N type IV pilus assembly protein YP_786878.1 2546104 R 360910 CDS YP_786879.1 187478855 6265939 complement(2547468..2548799) 1 NC_010645.1 glycerol-3-phosphate-binding periplasmic protein 2548799 6265939 BAV2365 Bordetella avium 197N glycerol-3-phosphate-binding periplasmic protein YP_786879.1 2547468 R 360910 CDS YP_786880.1 187478856 6265940 complement(2548804..2550060) 1 NC_010645.1 Also similar to BAV2005 (41.809 38d), BAV2030 (36.993 38d), BAV0960 (36.557 0d); D-amino acid dehydrogenase small subunit 2550060 dadA4 6265940 dadA4 Bordetella avium 197N D-amino acid dehydrogenase small subunit YP_786880.1 2548804 R 360910 CDS YP_786881.1 187478857 6266851 complement(2550305..2551348) 1 NC_010645.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 2551348 6266851 BAV2367 Bordetella avium 197N CDP-6-deoxy-delta-3,4-glucoseen reductase YP_786881.1 2550305 R 360910 CDS YP_786882.1 187478858 6265941 complement(2551400..2551768) 1 NC_010645.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 2551768 panD 6265941 panD Bordetella avium 197N aspartate alpha-decarboxylase YP_786882.1 2551400 R 360910 CDS YP_786883.1 187478859 6267483 2552023..2552340 1 NC_010645.1 transporter 2552340 sugE 6267483 sugE Bordetella avium 197N transporter YP_786883.1 2552023 D 360910 CDS YP_786884.1 187478860 6267779 complement(2552354..2553355) 1 NC_010645.1 hypothetical protein 2553355 6267779 BAV2370 Bordetella avium 197N hypothetical protein YP_786884.1 2552354 R 360910 CDS YP_786885.1 187478861 6265942 complement(2553467..2554393) 1 NC_010645.1 ectoine hydroxylase 2554393 thpD 6265942 thpD Bordetella avium 197N ectoine hydroxylase YP_786885.1 2553467 R 360910 CDS YP_786886.1 187478862 6267806 complement(2554408..2554806) 1 NC_010645.1 N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; L-ectoine synthase 2554806 ectC 6267806 ectC Bordetella avium 197N L-ectoine synthase YP_786886.1 2554408 R 360910 CDS YP_786887.1 187478863 6266918 complement(2554803..2556110) 1 NC_010645.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 2556110 ectB 6266918 ectB Bordetella avium 197N diaminobutyrate--2-oxoglutarate aminotransferase YP_786887.1 2554803 R 360910 CDS YP_786888.1 187478864 6266917 complement(2556213..2556782) 1 NC_010645.1 L-2,4-diaminobutyric acid acetyltransferase 2556782 ectA 6266917 ectA Bordetella avium 197N L-2,4-diaminobutyric acid acetyltransferase YP_786888.1 2556213 R 360910 CDS YP_786889.1 187478865 6266916 complement(2556779..2557318) 1 NC_010645.1 MarR family transcriptional regulator 2557318 6266916 BAV2375 Bordetella avium 197N MarR family transcriptional regulator YP_786889.1 2556779 R 360910 CDS YP_786890.1 187478866 6265943 complement(2557536..2559854) 1 NC_010645.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 2559854 parC 6265943 parC Bordetella avium 197N DNA topoisomerase IV subunit A YP_786890.1 2557536 R 360910 CDS YP_786891.1 187478867 6267486 complement(2559868..2560455) 1 NC_010645.1 Unique to the Bordetellae. No other significant database matches.; membrane protein 2560455 6267486 BAV2377 Bordetella avium 197N membrane protein YP_786891.1 2559868 R 360910 CDS YP_786892.1 187478868 6265944 complement(2560455..2562467) 1 NC_010645.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 2562467 nfxD 6265944 nfxD Bordetella avium 197N DNA topoisomerase IV subunit B YP_786892.1 2560455 R 360910 CDS YP_786893.1 187478869 6267420 2562664..2563008 1 NC_010645.1 Also similar to BAV1986 (40.000 38d.); thioredoxin 1 2563008 fipA 6267420 fipA Bordetella avium 197N thioredoxin 1 YP_786893.1 2562664 D 360910 CDS YP_786894.1 187478870 6266979 2563122..2564378 1 NC_010645.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2564378 rho 6266979 rho Bordetella avium 197N transcription termination factor Rho YP_786894.1 2563122 D 360910 CDS YP_786895.1 187478871 6267422 complement(2564460..>2568065) 1 NC_010645.1 hypothetical protein >2568065 6267422 BAV2381 Bordetella avium 197N hypothetical protein YP_786895.1 2564460 R 360910 CDS YP_786896.1 187478872 6265945 2568149..2570920 1 NC_010645.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 2570920 glnE 6265945 glnE Bordetella avium 197N bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_786896.1 2568149 D 360910 CDS YP_786897.1 187478873 6267082 2570975..2571649 1 NC_010645.1 hypothetical protein 2571649 6267082 BAV2383 Bordetella avium 197N hypothetical protein YP_786897.1 2570975 D 360910 CDS YP_786898.1 187478874 6265946 complement(2571683..2573074) 1 NC_010645.1 L-serine dehydratase 2573074 tdcG 6265946 tdcG Bordetella avium 197N L-serine dehydratase YP_786898.1 2571683 R 360910 CDS YP_786899.1 187478875 6267794 2573246..2574910 1 NC_010645.1 Na+/Pi-cotransporter 2574910 6267794 BAV2385 Bordetella avium 197N Na+/Pi-cotransporter YP_786899.1 2573246 D 360910 CDS YP_786900.1 187478876 6265947 complement(2574949..2575740) 1 NC_010645.1 carboxymethylenebutenolidase 2575740 clcD 6265947 clcD Bordetella avium 197N carboxymethylenebutenolidase YP_786900.1 2574949 R 360910 CDS YP_786901.1 187478877 6266789 complement(2575774..2576610) 1 NC_010645.1 zinc transporter 2576610 6266789 BAV2387 Bordetella avium 197N zinc transporter YP_786901.1 2575774 R 360910 CDS YP_786902.1 187478878 6265948 complement(2576727..2579441) 1 NC_010645.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 2579441 polA 6265948 polA Bordetella avium 197N DNA polymerase I YP_786902.1 2576727 R 360910 CDS YP_786903.1 187478879 6267551 <2579551..2580123 1 NC_010645.1 hypothetical protein 2580123 6267551 BAV2389 Bordetella avium 197N hypothetical protein YP_786903.1 <2579551 D 360910 CDS YP_786904.1 187478880 6265949 <2580212..2580649 1 NC_010645.1 Similar to the C-terminal region of Bordetellae toxin.; toxin (partial) 2580649 6265949 BAV2390 Bordetella avium 197N toxin (partial) YP_786904.1 <2580212 D 360910 CDS YP_786905.1 187478881 6265950 complement(2580715..2582535) 1 NC_010645.1 GTP-binding protein 2582535 bipA 6265950 bipA Bordetella avium 197N GTP-binding protein YP_786905.1 2580715 R 360910 CDS YP_786906.1 187478882 6266718 complement(2582552..2583286) 1 NC_010645.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 2583286 truB 6266718 truB Bordetella avium 197N tRNA pseudouridine synthase B YP_786906.1 2582552 R 360910 CDS YP_786907.1 187478883 6267899 complement(2583329..2583727) 1 NC_010645.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 2583727 rbfA 6267899 rbfA Bordetella avium 197N ribosome-binding factor A YP_786907.1 2583329 R 360910 CDS YP_786908.1 187478884 6267623 complement(2583753..2586857) 1 NC_010645.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 2586857 infB 6267623 infB Bordetella avium 197N translation initiation factor IF-2 YP_786908.1 2583753 R 360910 CDS YP_786909.1 187478885 6267246 complement(2586934..2588412) 1 NC_010645.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 2588412 nusA 6267246 nusA Bordetella avium 197N transcription elongation factor NusA YP_786909.1 2586934 R 360910 CDS YP_786910.1 187478886 6267447 complement(2588409..2588888) 1 NC_010645.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 2588888 6267447 BAV2396 Bordetella avium 197N hypothetical protein YP_786910.1 2588409 R 360910 CDS YP_786911.1 187478887 6265951 complement(2589338..2590711) 1 NC_010645.1 This CDS is extended at the C-terminus end relative to its Escherichia coli orthologue.; ribosomal large subunit pseudouridine synthase B 2590711 rluB 6265951 rluB Bordetella avium 197N ribosomal large subunit pseudouridine synthase B YP_786911.1 2589338 R 360910 CDS YP_786912.1 187478888 6267664 complement(2591062..2592057) 1 NC_010645.1 hypothetical protein 2592057 6267664 BAV2398 Bordetella avium 197N hypothetical protein YP_786912.1 2591062 R 360910 CDS YP_786913.1 187478889 6267873 2592262..2592363 1 NC_010645.1 protamine-like protein 2592363 tpr 6267873 tpr Bordetella avium 197N protamine-like protein YP_786913.1 2592262 D 360910 CDS YP_786914.1 187478890 6267824 2592603..2592761 1 NC_010645.1 hypothetical protein 2592761 6267824 BAV2400 Bordetella avium 197N hypothetical protein YP_786914.1 2592603 D 360910 CDS YP_786915.1 187478891 6265953 complement(2592973..2594166) 1 NC_010645.1 hypothetical protein 2594166 6265953 BAV2401 Bordetella avium 197N hypothetical protein YP_786915.1 2592973 R 360910 CDS YP_786916.1 187478892 6267884 complement(2594649..2595293) 1 NC_010645.1 maleylacetoacetate isomerase 2595293 maaI 6267884 maaI Bordetella avium 197N maleylacetoacetate isomerase YP_786916.1 2594649 R 360910 CDS YP_786917.1 187478893 6267320 complement(2595356..2596342) 1 NC_010645.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2596342 ispH 6267320 ispH Bordetella avium 197N 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_786917.1 2595356 R 360910 CDS YP_786918.1 187478894 6267257 complement(2596342..2596797) 1 NC_010645.1 FkbP-type peptidyl-prolyl cis-trans isomerase 2596797 fkpB 6267257 fkpB Bordetella avium 197N FkbP-type peptidyl-prolyl cis-trans isomerase YP_786918.1 2596342 R 360910 CDS YP_786919.1 187478895 6266983 2596871..2597548 1 NC_010645.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 2597548 radC 6266983 radC Bordetella avium 197N DNA repair protein RadC YP_786919.1 2596871 D 360910 CDS YP_786920.1 187478896 6267621 2597650..2598279 1 NC_010645.1 cyclase 2598279 6267621 BAV2406 Bordetella avium 197N cyclase YP_786920.1 2597650 D 360910 CDS YP_786921.1 187478897 6265955 2598372..2599211 1 NC_010645.1 tryptophan 2,3-dioxygenase 2599211 6265955 BAV2407 Bordetella avium 197N tryptophan 2,3-dioxygenase YP_786921.1 2598372 D 360910 CDS YP_786922.1 187478898 6265956 2599387..2599650 1 NC_010645.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 2599650 rpmE2 6265956 rpmE2 Bordetella avium 197N 50S ribosomal protein L31 type B YP_786922.1 2599387 D 360910 CDS YP_786923.1 187478899 6267700 <2599811..2601541 1 NC_010645.1 membrane protein 2601541 6267700 BAV2409 Bordetella avium 197N membrane protein YP_786923.1 <2599811 D 360910 CDS YP_786924.1 187478900 6265957 2601538..2602929 1 NC_010645.1 multidrug resistance protein 2602929 norM 6265957 norM Bordetella avium 197N multidrug resistance protein YP_786924.1 2601538 D 360910 CDS YP_786925.1 187478901 6267426 complement(2603000..2603206) 1 NC_010645.1 hypothetical protein 2603206 6267426 BAV2411 Bordetella avium 197N hypothetical protein YP_786925.1 2603000 R 360910 CDS YP_786926.1 187478902 6265958 complement(2603366..2604124) 1 NC_010645.1 membrane protein 2604124 6265958 BAV2412 Bordetella avium 197N membrane protein YP_786926.1 2603366 R 360910 CDS YP_786927.1 187478903 6265959 complement(2604186..2605493) 1 NC_010645.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 2605493 radA 6265959 radA Bordetella avium 197N DNA repair protein RadA YP_786927.1 2604186 R 360910 CDS YP_786928.1 187478904 6267619 2605708..2606310 1 NC_010645.1 . Seems to be unique to the Bordetellae.; hypothetical protein 2606310 6267619 BAV2414 Bordetella avium 197N hypothetical protein YP_786928.1 2605708 D 360910 CDS YP_786929.1 187478905 6265960 complement(2606327..2607043) 1 NC_010645.1 short chain dehydrogenase 2607043 6265960 BAV2415 Bordetella avium 197N short chain dehydrogenase YP_786929.1 2606327 R 360910 CDS YP_786930.1 187478906 6265961 complement(2607159..2608283) 1 NC_010645.1 alanine racemase, catabolic 2608283 alnB 6265961 alnB Bordetella avium 197N alanine racemase, catabolic YP_786930.1 2607159 R 360910 CDS YP_786931.1 187478907 6266614 2608384..2609205 1 NC_010645.1 phytoene synthase 2609205 6266614 BAV2417 Bordetella avium 197N phytoene synthase YP_786931.1 2608384 D 360910 CDS YP_786932.1 187478908 6265962 2609202..2610065 1 NC_010645.1 phytoene synthase 2610065 6265962 BAV2418 Bordetella avium 197N phytoene synthase YP_786932.1 2609202 D 360910 CDS YP_786933.1 187478909 6265963 2610062..2611372 1 NC_010645.1 zeta-carotene desaturase 2611372 6265963 BAV2419 Bordetella avium 197N zeta-carotene desaturase YP_786933.1 2610062 D 360910 CDS YP_786934.1 187478910 6265964 complement(2611375..2611764) 1 NC_010645.1 membrane protein 2611764 crcB 6265964 crcB Bordetella avium 197N membrane protein YP_786934.1 2611375 R 360910 CDS YP_786935.1 187478911 6266812 complement(2611778..2612338) 1 NC_010645.1 membrane protein 2612338 6266812 BAV2421 Bordetella avium 197N membrane protein YP_786935.1 2611778 R 360910 CDS YP_786936.1 187478912 6265965 complement(2612542..2613990) 1 NC_010645.1 N-acyl-D-glutamate deacylase 2613990 6265965 BAV2422 Bordetella avium 197N N-acyl-D-glutamate deacylase YP_786936.1 2612542 R 360910 CDS YP_786937.1 187478913 6265966 2614101..2615111 1 NC_010645.1 LysR family transcriptional regulator 2615111 6265966 BAV2423 Bordetella avium 197N LysR family transcriptional regulator YP_786937.1 2614101 D 360910 CDS YP_786938.1 187478914 6265967 complement(2615092..2617695) 1 NC_010645.1 ATP-dependent protease ATPase subunit 2617695 clpB 6265967 clpB Bordetella avium 197N ATP-dependent protease ATPase subunit YP_786938.1 2615092 R 360910 CDS YP_786939.1 187478915 6266791 2618093..2618821 1 NC_010645.1 previously sequenced in Bordetella pertussis as transcriptional regulatory protein Btr; fumarate and nitrate reduction regulatory protein 2618821 btr 6266791 btr Bordetella avium 197N fumarate and nitrate reduction regulatory protein YP_786939.1 2618093 D 360910 CDS YP_786940.1 187478916 6266743 2618828..2619943 1 NC_010645.1 hypothetical protein 2619943 6266743 BAV2426 Bordetella avium 197N hypothetical protein YP_786940.1 2618828 D 360910 CDS YP_786941.1 187478917 6265968 complement(2619940..2620281) 1 NC_010645.1 ferredoxin 2620281 6265968 BAV2427 Bordetella avium 197N ferredoxin YP_786941.1 2619940 R 360910 CDS YP_786942.1 187478918 6265969 complement(2620278..2620862) 1 NC_010645.1 ADP-ribose pyrophosphatase 2620862 nudF 6265969 nudF Bordetella avium 197N ADP-ribose pyrophosphatase YP_786942.1 2620278 R 360910 CDS YP_786943.1 187478919 6267431 complement(2620931..2621695) 1 NC_010645.1 membrane protein 2621695 6267431 BAV2429 Bordetella avium 197N membrane protein YP_786943.1 2620931 R 360910 CDS YP_786944.1 187478920 6265970 2621779..2622672 1 NC_010645.1 LysR family transcriptional regulator 2622672 6265970 BAV2430 Bordetella avium 197N LysR family transcriptional regulator YP_786944.1 2621779 D 360910 CDS YP_786945.1 187478921 6265971 complement(2622682..2622921) 1 NC_010645.1 hypothetical protein 2622921 6265971 BAV2431 Bordetella avium 197N hypothetical protein YP_786945.1 2622682 R 360910 CDS YP_786946.1 187478922 6265972 complement(2622992..2623312) 1 NC_010645.1 hypothetical protein 2623312 6265972 BAV2432 Bordetella avium 197N hypothetical protein YP_786946.1 2622992 R 360910 CDS YP_786947.1 187478923 6265973 <2623453..2625177 1 NC_010645.1 hypothetical protein 2625177 6265973 BAV2433 Bordetella avium 197N hypothetical protein YP_786947.1 <2623453 D 360910 CDS YP_786948.1 187478924 6265974 2625241..2625666 1 NC_010645.1 lipoprotein 2625666 6265974 BAV2434 Bordetella avium 197N lipoprotein YP_786948.1 2625241 D 360910 CDS YP_786949.1 187478925 6265975 complement(2625658..2625843) 1 NC_010645.1 hypothetical protein 2625843 6265975 BAV2435 Bordetella avium 197N hypothetical protein YP_786949.1 2625658 R 360910 CDS YP_786950.1 187478926 6265976 2625959..2626591 1 NC_010645.1 hypothetical protein 2626591 6265976 BAV2436 Bordetella avium 197N hypothetical protein YP_786950.1 2625959 D 360910 CDS YP_786951.1 187478927 6265977 complement(2626609..2627217) 1 NC_010645.1 Weakly similar to several hypothetical proteins.; hypothetical protein 2627217 6265977 BAV2437 Bordetella avium 197N hypothetical protein YP_786951.1 2626609 R 360910 CDS YP_786952.1 187478928 6265978 2627417..2627629 1 NC_010645.1 hypothetical protein 2627629 6265978 BAV2438 Bordetella avium 197N hypothetical protein YP_786952.1 2627417 D 360910 CDS YP_786953.1 187478929 6265979 complement(2627739..2629001) 1 NC_010645.1 transporter 2629001 6265979 BAV2439 Bordetella avium 197N transporter YP_786953.1 2627739 R 360910 CDS YP_786954.1 187478930 6265981 2629436..2630239 1 NC_010645.1 catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis; putative L-aspartate dehydrogenase 2630239 6265981 BAV2441 Bordetella avium 197N putative L-aspartate dehydrogenase YP_786954.1 2629436 D 360910 CDS YP_786955.1 187478931 6265982 2630384..2632462 1 NC_010645.1 signaling protein 2632462 6265982 BAV2442 Bordetella avium 197N signaling protein YP_786955.1 2630384 D 360910 CDS YP_786956.1 187478932 6265983 2632556..2633671 1 NC_010645.1 membrane protein 2633671 6265983 BAV2443 Bordetella avium 197N membrane protein YP_786956.1 2632556 D 360910 CDS YP_786957.1 187478933 6265984 complement(2633643..2634404) 1 NC_010645.1 ABC transporter permease 2634404 hndJ 6265984 hndJ Bordetella avium 197N ABC transporter permease YP_786957.1 2633643 R 360910 CDS YP_786958.1 187478934 6267188 complement(2634401..>2635333) 1 NC_010645.1 ABC transporter ATP-binding protein >2635333 hndI 6267188 hndI Bordetella avium 197N ABC transporter ATP-binding protein YP_786958.1 2634401 R 360910 CDS YP_786959.1 187478935 6267187 complement(2635486..2635911) 1 NC_010645.1 organic hydroperoxide resistance protein 2635911 ohr 6267187 ohr Bordetella avium 197N organic hydroperoxide resistance protein YP_786959.1 2635486 R 360910 CDS YP_786960.1 187478936 6267455 complement(2636041..2636511) 1 NC_010645.1 MarR family transcriptional regulator 2636511 ohrR 6267455 ohrR Bordetella avium 197N MarR family transcriptional regulator YP_786960.1 2636041 R 360910 CDS YP_786961.1 187478937 6267456 complement(2636581..2637840) 1 NC_010645.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate transaminase 2637840 bioA 6267456 bioA Bordetella avium 197N adenosylmethionine--8-amino-7-oxononanoate transaminase YP_786961.1 2636581 R 360910 CDS YP_786962.1 187478938 6266713 2637936..2639090 1 NC_010645.1 8-amino-7-oxononanoate synthase 2639090 bioF 6266713 bioF Bordetella avium 197N 8-amino-7-oxononanoate synthase YP_786962.1 2637936 D 360910 CDS YP_786963.1 187478939 6266716 2639087..2639725 1 NC_010645.1 biotin biosynthesis protein 2639725 bioH 6266716 bioH Bordetella avium 197N biotin biosynthesis protein YP_786963.1 2639087 D 360910 CDS YP_786964.1 187478940 6266717 2639722..2641119 1 NC_010645.1 bifunctional biotin synthesis protein BioCD 2641119 bioCD 6266717 bioCD Bordetella avium 197N bifunctional biotin synthesis protein BioCD YP_786964.1 2639722 D 360910 CDS YP_786965.1 187478941 6265985 2646850..2647671 1 NC_010645.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 2647671 queF 6265985 queF Bordetella avium 197N 7-cyano-7-deazaguanine reductase YP_786965.1 2646850 D 360910 CDS YP_786966.1 187478942 6265986 complement(2647685..2648914) 1 NC_010645.1 transporter 2648914 6265986 BAV2454 Bordetella avium 197N transporter YP_786966.1 2647685 R 360910 CDS YP_786967.1 187478943 6265987 complement(2649044..2649616) 1 NC_010645.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2649616 pgsA 6265987 pgsA Bordetella avium 197N CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_786967.1 2649044 R 360910 CDS YP_786968.1 187478944 6267510 complement(2649659..2651392) 1 NC_010645.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2651392 uvrC 6267510 uvrC Bordetella avium 197N excinuclease ABC subunit C YP_786968.1 2649659 R 360910 CDS YP_786969.1 187478945 6267924 complement(2651445..2652497) 1 NC_010645.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 2652497 nagZ 6267924 nagZ Bordetella avium 197N beta-hexosaminidase YP_786969.1 2651445 R 360910 CDS YP_786970.1 187478946 6267417 complement(2652508..2652951) 1 NC_010645.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 2652951 acpS 6267417 acpS Bordetella avium 197N 4'-phosphopantetheinyl transferase YP_786970.1 2652508 R 360910 CDS YP_786971.1 187478947 6266590 complement(2653067..2653792) 1 NC_010645.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 2653792 pdxJ 6266590 pdxJ Bordetella avium 197N pyridoxine 5'-phosphate synthase YP_786971.1 2653067 R 360910 CDS YP_786972.1 187478948 6267497 complement(2653789..2655315) 1 NC_010645.1 multidrug efflux system outer membrane protein 2655315 6267497 BAV2460 Bordetella avium 197N multidrug efflux system outer membrane protein YP_786972.1 2653789 R 360910 CDS YP_786973.1 187478949 6265988 complement(2655312..2658536) 1 NC_010645.1 multidrug efflux system transmembrane protein 2658536 6265988 BAV2461 Bordetella avium 197N multidrug efflux system transmembrane protein YP_786973.1 2655312 R 360910 CDS YP_786974.1 187478950 6265989 complement(2658597..2659781) 1 NC_010645.1 multidrug efflux system inner membrane protein 2659781 6265989 BAV2462 Bordetella avium 197N multidrug efflux system inner membrane protein YP_786974.1 2658597 R 360910 CDS YP_786975.1 187478951 6265990 complement(2659969..>2660352) 1 NC_010645.1 Partial CDS. Similar to the C-terminal region of many regulators including Rhodobacter sphaeroides DmsR and Escherichia coli aerobic respiration control protein ArcA; transcriptional regulator >2660352 6265990 BAV2463 Bordetella avium 197N transcriptional regulator YP_786975.1 2659969 R 360910 CDS YP_786976.1 187478952 6265991 complement(2660963..2661559) 1 NC_010645.1 lipoprotein 2661559 6265991 BAV2464 Bordetella avium 197N lipoprotein YP_786976.1 2660963 R 360910 CDS YP_786977.1 187478953 6265992 2661655..2662458 1 NC_010645.1 regulator of molybdenum transport genes 2662458 modE 6265992 modE Bordetella avium 197N regulator of molybdenum transport genes YP_786977.1 2661655 D 360910 CDS YP_786978.1 187478954 6267374 complement(2662417..2663154) 1 NC_010645.1 molybdenum ABC transporter ATP-binding protein 2663154 modC 6267374 modC Bordetella avium 197N molybdenum ABC transporter ATP-binding protein YP_786978.1 2662417 R 360910 CDS YP_786979.1 187478955 6267373 complement(2663151..2663825) 1 NC_010645.1 molybdenum ABC transporter permease 2663825 modB 6267373 modB Bordetella avium 197N molybdenum ABC transporter permease YP_786979.1 2663151 R 360910 CDS YP_786980.1 187478956 6267372 complement(2663836..2664591) 1 NC_010645.1 molybdenum ABC transporter molybdate-binding periplasmic protein 2664591 modA 6267372 modA Bordetella avium 197N molybdenum ABC transporter molybdate-binding periplasmic protein YP_786980.1 2663836 R 360910 CDS YP_786981.1 187478957 6267371 complement(2664696..2665490) 1 NC_010645.1 ABC transporter ATP-binding protein 2665490 6267371 BAV2469 Bordetella avium 197N ABC transporter ATP-binding protein YP_786981.1 2664696 R 360910 CDS YP_786982.1 187478958 6265993 complement(2665492..2666382) 1 NC_010645.1 ABC transporter permease 2666382 6265993 BAV2470 Bordetella avium 197N ABC transporter permease YP_786982.1 2665492 R 360910 CDS YP_786983.1 187478959 6265994 complement(2666464..2667432) 1 NC_010645.1 hypothetical protein 2667432 6265994 BAV2471 Bordetella avium 197N hypothetical protein YP_786983.1 2666464 R 360910 CDS YP_786984.1 187478960 6265995 2667750..2668517 1 NC_010645.1 hypothetical protein 2668517 6265995 BAV2472 Bordetella avium 197N hypothetical protein YP_786984.1 2667750 D 360910 CDS YP_786985.1 187478961 6265996 complement(2668351..2668875) 1 NC_010645.1 superoxide dismutase 2668875 sodC 6265996 sodC Bordetella avium 197N superoxide dismutase YP_786985.1 2668351 R 360910 CDS YP_786986.1 187478962 6267763 complement(2669000..2669770) 1 NC_010645.1 hypothetical protein 2669770 6267763 BAV2474 Bordetella avium 197N hypothetical protein YP_786986.1 2669000 R 360910 CDS YP_786987.1 187478963 6265997 2669808..2671388 1 NC_010645.1 acylase 2671388 6265997 BAV2475 Bordetella avium 197N acylase YP_786987.1 2669808 D 360910 CDS YP_786988.1 187478964 6265998 complement(2671400..2672581) 1 NC_010645.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 2672581 6265998 BAV2476 Bordetella avium 197N beta-ketothiolase YP_786988.1 2671400 R 360910 CDS YP_786989.1 187478965 6265999 complement(2672713..2673207) 1 NC_010645.1 acetyltransferase 2673207 6265999 BAV2477 Bordetella avium 197N acetyltransferase YP_786989.1 2672713 R 360910 CDS YP_786990.1 187478966 6266000 complement(2673403..2674641) 1 NC_010645.1 glycine betaine/L-proline ABC transporter ATP-binding protein 2674641 proV 6266000 proV Bordetella avium 197N glycine betaine/L-proline ABC transporter ATP-binding protein YP_786990.1 2673403 R 360910 CDS YP_786991.1 187478967 6267578 complement(2674638..2675495) 1 NC_010645.1 glycine betaine/L-proline ABC transporter permease 2675495 proW 6267578 proW Bordetella avium 197N glycine betaine/L-proline ABC transporter permease YP_786991.1 2674638 R 360910 CDS YP_786992.1 187478968 6267579 complement(2675580..2676575) 1 NC_010645.1 glycine betaine/L-proline ABC transporter substrate-binding periplasmic protein 2676575 proX 6267579 proX Bordetella avium 197N glycine betaine/L-proline ABC transporter substrate-binding periplasmic protein YP_786992.1 2675580 R 360910 CDS YP_786993.1 187478969 6267580 complement(2676761..2676868) 1 NC_010645.1 Doubtful CDS.; hypothetical protein 2676868 6267580 BAV2481 Bordetella avium 197N hypothetical protein YP_786993.1 2676761 R 360910 CDS YP_786994.1 187478970 6266001 complement(2676970..2677260) 1 NC_010645.1 hypothetical protein 2677260 6266001 BAV2482 Bordetella avium 197N hypothetical protein YP_786994.1 2676970 R 360910 CDS YP_786995.1 187478971 6266002 complement(2677364..2678632) 1 NC_010645.1 cyclopropane-fatty-acyl-phospholipid synthase 2678632 6266002 BAV2483 Bordetella avium 197N cyclopropane-fatty-acyl-phospholipid synthase YP_786995.1 2677364 R 360910 CDS YP_786996.1 187478972 6266003 2678844..2680010 1 NC_010645.1 bicyclomycin resistance protein ( transporter) 2680010 bcr 6266003 bcr Bordetella avium 197N bicyclomycin resistance protein ( transporter) YP_786996.1 2678844 D 360910 CDS YP_786997.1 187478973 6266690 2680313..2680549 1 NC_010645.1 required for 70S ribosome assembly; 50S ribosomal protein L28 2680549 rpmB 6266690 rpmB Bordetella avium 197N 50S ribosomal protein L28 YP_786997.1 2680313 D 360910 CDS YP_786998.1 187478974 6267697 2680627..2680794 1 NC_010645.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2680794 rpmG 6267697 rpmG Bordetella avium 197N 50S ribosomal protein L33 YP_786998.1 2680627 D 360910 CDS YP_786999.1 187478975 6267702 2680947..2682242 1 NC_010645.1 hypothetical protein 2682242 6267702 BAV2487 Bordetella avium 197N hypothetical protein YP_786999.1 2680947 D 360910 CDS YP_787000.1 187478976 6266004 complement(2682176..>2683948) 1 NC_010645.1 sulfate transporter >2683948 6266004 BAV2488 Bordetella avium 197N sulfate transporter YP_787000.1 2682176 R 360910 CDS YP_787001.1 187478977 6266005 <2684351..2684668 1 NC_010645.1 DNA-binding protein 2684668 bph2 6266005 bph2 Bordetella avium 197N DNA-binding protein YP_787001.1 <2684351 D 360910 CDS YP_787002.1 187478978 6266725 2684799..2685311 1 NC_010645.1 MarR family transcriptional regulator 2685311 6266725 BAV2490 Bordetella avium 197N MarR family transcriptional regulator YP_787002.1 2684799 D 360910 CDS YP_787003.1 187478979 6266006 2685308..2686498 1 NC_010645.1 transporter 2686498 6266006 BAV2491 Bordetella avium 197N transporter YP_787003.1 2685308 D 360910 CDS YP_787004.1 187478980 6266007 2686574..2689231 1 NC_010645.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 2689231 leuS 6266007 leuS Bordetella avium 197N leucyl-tRNA synthetase YP_787004.1 2686574 D 360910 CDS YP_787005.1 187478981 6267293 2689237..2689920 1 NC_010645.1 lipoprotein 2689920 6267293 BAV2493 Bordetella avium 197N lipoprotein YP_787005.1 2689237 D 360910 CDS YP_787006.1 187478982 6266008 2689920..2690969 1 NC_010645.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 2690969 holA 6266008 holA Bordetella avium 197N DNA polymerase III subunit delta YP_787006.1 2689920 D 360910 CDS YP_787007.1 187478983 6267189 2690998..2692257 1 NC_010645.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 2692257 proA 6267189 proA Bordetella avium 197N gamma-glutamyl phosphate reductase YP_787007.1 2690998 D 360910 CDS YP_787008.1 187478984 6267575 2692266..2692655 1 NC_010645.1 . Seems to be unique to the Bordetellae.; membrane protein 2692655 6267575 BAV2496 Bordetella avium 197N membrane protein YP_787008.1 2692266 D 360910 CDS YP_787009.1 187478985 6266009 2692659..2693183 1 NC_010645.1 acetyltransferase 2693183 6266009 BAV2497 Bordetella avium 197N acetyltransferase YP_787009.1 2692659 D 360910 CDS YP_787010.1 187478986 6266010 complement(2693188..>2694579) 1 NC_010645.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase >2694579 6266010 BAV2498 Bordetella avium 197N amidase YP_787010.1 2693188 R 360910 CDS YP_787011.1 187478987 6266011 2694841..2695113 1 NC_010645.1 hypothetical protein 2695113 6266011 BAV2499 Bordetella avium 197N hypothetical protein YP_787011.1 2694841 D 360910 CDS YP_787012.1 187478988 6266012 <2695116..2695505 1 NC_010645.1 hypothetical protein 2695505 6266012 BAV2500 Bordetella avium 197N hypothetical protein YP_787012.1 <2695116 D 360910 CDS YP_787013.1 187478989 6267958 complement(2702065..2703579) 1 NC_010645.1 succinyl-CoA:coenzyme a transferase 2703579 6267958 BAV2501 Bordetella avium 197N succinyl-CoA:coenzyme a transferase YP_787013.1 2702065 R 360910 CDS YP_787014.1 187478990 6266014 2703813..2704721 1 NC_010645.1 LysR family transcriptional regulator 2704721 6266014 BAV2502 Bordetella avium 197N LysR family transcriptional regulator YP_787014.1 2703813 D 360910 CDS YP_787015.1 187478991 6266015 2704774..2707125 1 NC_010645.1 mechanosensitive protein 2707125 6266015 BAV2503 Bordetella avium 197N mechanosensitive protein YP_787015.1 2704774 D 360910 CDS YP_787016.1 187478992 6266016 complement(2707430..2708200) 1 NC_010645.1 membrane protein 2708200 6266016 BAV2504 Bordetella avium 197N membrane protein YP_787016.1 2707430 R 360910 CDS YP_787017.1 187478993 6266017 complement(2708197..2709078) 1 NC_010645.1 amino acid metabolite efflux pump 2709078 eamA 6266017 eamA Bordetella avium 197N amino acid metabolite efflux pump YP_787017.1 2708197 R 360910 CDS YP_787018.1 187478994 6266912 <2709237..2709527 1 NC_010645.1 monooxygenase 2709527 6266912 BAV2506 Bordetella avium 197N monooxygenase YP_787018.1 <2709237 D 360910 CDS YP_787019.1 187478995 6266018 complement(2709520..>2709879) 1 NC_010645.1 hypothetical protein >2709879 6266018 BAV2507 Bordetella avium 197N hypothetical protein YP_787019.1 2709520 R 360910 CDS YP_787020.1 187478996 6266019 complement(2709884..2710465) 1 NC_010645.1 exonuclease 2710465 6266019 BAV2508 Bordetella avium 197N exonuclease YP_787020.1 2709884 R 360910 CDS YP_787021.1 187478997 6266020 2710627..2713218 1 NC_010645.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 2713218 acnB 6266020 acnB Bordetella avium 197N bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_787021.1 2710627 D 360910 CDS YP_787022.1 187478998 6266587 complement(2713286..2715547) 1 NC_010645.1 molybdopterin-containing oxidoreductase 2715547 cbbbC 6266587 cbbbC Bordetella avium 197N molybdopterin-containing oxidoreductase YP_787022.1 2713286 R 360910 CDS YP_787023.1 187478999 6266762 2715693..2716343 1 NC_010645.1 membrane protein 2716343 6266762 BAV2511 Bordetella avium 197N membrane protein YP_787023.1 2715693 D 360910 CDS YP_787024.1 187479000 6266021 complement(2716392..2718572) 1 NC_010645.1 ferric siderophore receptor 2718572 bfrB 6266021 bfrB Bordetella avium 197N ferric siderophore receptor YP_787024.1 2716392 R 360910 CDS YP_787025.1 187479001 6266022 2719698..2722403 1 NC_010645.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2722403 acnA3 6266022 acnA3 Bordetella avium 197N aconitate hydratase YP_787025.1 2719698 D 360910 CDS YP_787026.1 187479002 6266585 complement(2722493..2723269) 1 NC_010645.1 4,5-dopa dioxygenase extradiol 2723269 6266585 BAV2515 Bordetella avium 197N 4,5-dopa dioxygenase extradiol YP_787026.1 2722493 R 360910 CDS YP_787027.1 187479003 6266023 2723434..2724627 1 NC_010645.1 hypothetical protein 2724627 6266023 BAV2516 Bordetella avium 197N hypothetical protein YP_787027.1 2723434 D 360910 CDS YP_787028.1 187479004 6266024 2724635..2725711 1 NC_010645.1 hypothetical protein 2725711 6266024 BAV2517 Bordetella avium 197N hypothetical protein YP_787028.1 2724635 D 360910 CDS YP_787029.1 187479005 6266025 2725854..2726411 1 NC_010645.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2726411 efp 6266025 efp Bordetella avium 197N elongation factor P YP_787029.1 2725854 D 360910 CDS YP_787030.1 187479006 6266919 2726679..2727413 1 NC_010645.1 short-chain dehydrogenase/reductase 2727413 6266919 BAV2519 Bordetella avium 197N short-chain dehydrogenase/reductase YP_787030.1 2726679 D 360910 CDS YP_787031.1 187479007 6266026 complement(2727498..2728532) 1 NC_010645.1 outer membrane porin protein 2728532 6266026 BAV2520 Bordetella avium 197N outer membrane porin protein YP_787031.1 2727498 R 360910 CDS YP_787032.1 187479008 6266027 complement(2728657..2729823) 1 NC_010645.1 sugar efflux transporter 2729823 6266027 BAV2521 Bordetella avium 197N sugar efflux transporter YP_787032.1 2728657 R 360910 CDS YP_787033.1 187479009 6266029 complement(2730909..2731337) 1 NC_010645.1 hypothetical protein 2731337 6266029 BAV2523 Bordetella avium 197N hypothetical protein YP_787033.1 2730909 R 360910 CDS YP_787034.1 187479010 6266030 complement(2731434..2732126) 1 NC_010645.1 hypothetical protein 2732126 6266030 BAV2524 Bordetella avium 197N hypothetical protein YP_787034.1 2731434 R 360910 CDS YP_787035.1 187479011 6266031 complement(join(2732228..2732485,2732487..>2732540)) 1 NC_010645.1 Partial CDS. Similar to an internal region of the Bordetellae response regulators BB1834/BPP2384/BP2004.; sigma-54 interacting transcription regulator (partial) 2732485 6266031 BAV2525b Bordetella avium 197N sigma-54 interacting transcription regulator (partial) YP_787035.1 2732228 R 360910 CDS YP_787036.1 187479012 6266032 complement(join(2732653..2732658,2732660..2733004)) 1 NC_010645.1 Partial CDS. Similar to the N-terminal region of the Bordetellae exported protein BB1833/BPP2383/BP2003.; hypothetical protein 2733004 6266032 BAV2525A Bordetella avium 197N hypothetical protein YP_787036.1 2732653 R 360910 CDS YP_787037.1 187479013 6266033 complement(2733031..>2733378) 1 NC_010645.1 hypothetical protein >2733378 6266033 BAV2526 Bordetella avium 197N hypothetical protein YP_787037.1 2733031 R 360910 CDS YP_787038.1 187479014 6266035 complement(2733442..>2733954) 1 NC_010645.1 Partial CDS. Similar to the Bordetellae lipoprotein BB1831/BPP2381/BP2001.; lipoprotein (partial) >2733954 6266035 BAV2527 Bordetella avium 197N lipoprotein (partial) YP_787038.1 2733442 R 360910 CDS YP_787039.1 187479015 6266036 complement(2734183..2735100) 1 NC_010645.1 type IV pilus assembly protein 2735100 6266036 BAV2528 Bordetella avium 197N type IV pilus assembly protein YP_787039.1 2734183 R 360910 CDS YP_787040.1 187479016 6266039 complement(2736479..>2737810) 1 NC_010645.1 hypothetical protein >2737810 6266039 BAV2531 Bordetella avium 197N hypothetical protein YP_787040.1 2736479 R 360910 CDS YP_787041.1 187479017 6266040 complement(2737807..>2738160) 1 NC_010645.1 type IV pilus assembly protein (partial) >2738160 6266040 BAV2532 Bordetella avium 197N type IV pilus assembly protein (partial) YP_787041.1 2737807 R 360910 CDS YP_787042.1 187479018 6266041 complement(2738157..2738663) 1 NC_010645.1 type 4 prepilin leader peptidase 2738663 6266041 BAV2533 Bordetella avium 197N type 4 prepilin leader peptidase YP_787042.1 2738157 R 360910 CDS YP_787043.1 187479019 6266042 complement(2738762..2738977) 1 NC_010645.1 pilin subunit 2738977 6266042 BAV2534 Bordetella avium 197N pilin subunit YP_787043.1 2738762 R 360910 CDS YP_787044.1 187479020 6266043 complement(2739110..>2739910) 1 NC_010645.1 signaling protein >2739910 6266043 BAV2535 Bordetella avium 197N signaling protein YP_787044.1 2739110 R 360910 CDS YP_787045.1 187479021 6266044 2740357..2741316 1 NC_010645.1 Partial CDS. truncated at N-terminus; hypothetical protein 2741316 6266044 BAV2536 Bordetella avium 197N hypothetical protein YP_787045.1 2740357 D 360910 CDS YP_787046.1 187479022 6266046 2742849..2743385 1 NC_010645.1 MarR family transcriptional regulator 2743385 6266046 BAV2538 Bordetella avium 197N MarR family transcriptional regulator YP_787046.1 2742849 D 360910 CDS YP_787047.1 187479023 6266047 complement(2743434..2745077) 1 NC_010645.1 ABC transporter ATP-binding protein 2745077 6266047 BAV2539 Bordetella avium 197N ABC transporter ATP-binding protein YP_787047.1 2743434 R 360910 CDS YP_787048.1 187479024 6266048 complement(2745074..2746513) 1 NC_010645.1 ABC transporter permease 2746513 6266048 BAV2540 Bordetella avium 197N ABC transporter permease YP_787048.1 2745074 R 360910 CDS YP_787049.1 187479025 6266049 complement(2746519..2747496) 1 NC_010645.1 ABC transporter permease 2747496 6266049 BAV2541 Bordetella avium 197N ABC transporter permease YP_787049.1 2746519 R 360910 CDS YP_787050.1 187479026 6266050 complement(2747489..2749726) 1 NC_010645.1 ABC transporter substrate-binding protein 2749726 6266050 BAV2542 Bordetella avium 197N ABC transporter substrate-binding protein YP_787050.1 2747489 R 360910 CDS YP_787051.1 187479027 6266051 complement(2749803..2750351) 1 NC_010645.1 nuclease 2750351 6266051 BAV2543 Bordetella avium 197N nuclease YP_787051.1 2749803 R 360910 CDS YP_787052.1 187479028 6266052 complement(2750382..2751380) 1 NC_010645.1 magnesium transporter 2751380 6266052 BAV2544 Bordetella avium 197N magnesium transporter YP_787052.1 2750382 R 360910 CDS YP_787053.1 187479029 6266053 complement(2751436..2753493) 1 NC_010645.1 DNA helicase 2753493 6266053 BAV2545 Bordetella avium 197N DNA helicase YP_787053.1 2751436 R 360910 CDS YP_787054.1 187479030 6266054 2753538..2754446 1 NC_010645.1 hypothetical protein 2754446 6266054 BAV2546 Bordetella avium 197N hypothetical protein YP_787054.1 2753538 D 360910 CDS YP_787055.1 187479031 6266055 complement(2754421..2755851) 1 NC_010645.1 GntR family transcriptional regulator 2755851 6266055 BAV2547 Bordetella avium 197N GntR family transcriptional regulator YP_787055.1 2754421 R 360910 CDS YP_787056.1 187479032 6266056 2756050..2757315 1 NC_010645.1 Also similar to BAV2199, (67.952 38d.); 4-aminobutyrate aminotransferase 2757315 goaG2 6266056 goaG2 Bordetella avium 197N 4-aminobutyrate aminotransferase YP_787056.1 2756050 D 360910 CDS YP_787057.1 187479033 6267107 2757391..2758848 1 NC_010645.1 succinate-semialdehyde dehydrogenase (NADP+) 2758848 gabD 6267107 gabD Bordetella avium 197N succinate-semialdehyde dehydrogenase (NADP+) YP_787057.1 2757391 D 360910 CDS YP_787058.1 187479034 6267049 2758965..2759831 1 NC_010645.1 Also similar to BAV2568 (31.818 38d.) and BAV2857 (27.413 38d.).; inositol-1-monophosphatase 2759831 suhB1 6267049 suhB1 Bordetella avium 197N inositol-1-monophosphatase YP_787058.1 2758965 D 360910 CDS YP_787059.1 187479035 6267780 complement(2759828..2760646) 1 NC_010645.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 2760646 cobB 6267780 cobB Bordetella avium 197N NAD-dependent deacetylase YP_787059.1 2759828 R 360910 CDS YP_787060.1 187479036 6266800 complement(2760662..2761606) 1 NC_010645.1 serine acetyltransferase 2761606 srpH 6266800 srpH Bordetella avium 197N serine acetyltransferase YP_787060.1 2760662 R 360910 CDS YP_787061.1 187479037 6267771 <2762056..2764440 1 NC_010645.1 ; Similar to N-terminal half of Escherichia coli 3-hydroxybutyryl-coa dehydrogenase paaH SWALL:PAAH_ECOLI (SWALL:P76083) (475 aa) fasta scores: E(): 5.4e-15, 30.79 38d in 328 aa; acetoacetyl-CoA reductase 2764440 phbB 6267771 phbB Bordetella avium 197N acetoacetyl-CoA reductase YP_787061.1 <2762056 D 360910 CDS YP_787062.1 187479038 6267520 2764450..2765643 1 NC_010645.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2765643 6267520 BAV2554 Bordetella avium 197N acetyl-CoA acetyltransferase YP_787062.1 2764450 D 360910 CDS YP_787063.1 187479039 6266057 <2765707..2766297 1 NC_010645.1 hypothetical protein 2766297 6266057 BAV2555 Bordetella avium 197N hypothetical protein YP_787063.1 <2765707 D 360910 CDS YP_787064.1 187479040 6267839 complement(2766511..2767629) 1 NC_010645.1 morphinone reductase 2767629 morB 6267839 morB Bordetella avium 197N morphinone reductase YP_787064.1 2766511 R 360910 CDS YP_787065.1 187479041 6267376 complement(2767654..2767962) 1 NC_010645.1 ArsR family transcriptional regulator 2767962 6267376 BAV2557 Bordetella avium 197N ArsR family transcriptional regulator YP_787065.1 2767654 R 360910 CDS YP_787066.1 187479042 6267881 complement(2768935..2770194) 1 NC_010645.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 2770194 ask 6267881 ask Bordetella avium 197N aspartate kinase YP_787066.1 2768935 R 360910 CDS YP_787067.1 187479043 6266668 complement(2770287..2771312) 1 NC_010645.1 tRNAIle-lysidine synthetase ( cell cycle protein) 2771312 mesJ 6266668 mesJ Bordetella avium 197N tRNAIle-lysidine synthetase ( cell cycle protein) YP_787067.1 2770287 R 360910 CDS YP_787068.1 187479044 6267333 complement(2771331..2772296) 1 NC_010645.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 2772296 accA 6267333 accA Bordetella avium 197N acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_787068.1 2771331 R 360910 CDS YP_787069.1 187479045 6266573 complement(2772333..2772977) 1 NC_010645.1 DNA-3-methyladenine glycosylase 2772977 aidA 6266573 aidA Bordetella avium 197N DNA-3-methyladenine glycosylase YP_787069.1 2772333 R 360910 CDS YP_787070.1 187479046 6266609 complement(2772991..2774442) 1 NC_010645.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2774442 cysS 6266609 cysS Bordetella avium 197N cysteinyl-tRNA synthetase YP_787070.1 2772991 R 360910 CDS YP_787071.1 187479047 6266845 <2774645..2775331 1 NC_010645.1 hypothetical protein 2775331 6266845 BAV2563 Bordetella avium 197N hypothetical protein YP_787071.1 <2774645 D 360910 CDS YP_787072.1 187479048 6266060 2775463..2775969 1 NC_010645.1 peptidyl-prolyl cis-trans isomerase B 2775969 ppiB 6266060 ppiB Bordetella avium 197N peptidyl-prolyl cis-trans isomerase B YP_787072.1 2775463 D 360910 CDS YP_787073.1 187479049 6267560 2775962..2776732 1 NC_010645.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 2776732 lpxH 6267560 lpxH Bordetella avium 197N UDP-2,3-diacylglucosamine hydrolase YP_787073.1 2775962 D 360910 CDS YP_787074.1 187479050 6267313 complement(2776839..>2777687) 1 NC_010645.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase >2777687 bacA 6267313 bacA Bordetella avium 197N undecaprenyl pyrophosphate phosphatase YP_787074.1 2776839 R 360910 CDS YP_787075.1 187479051 6266687 complement(2777715..2779301) 1 NC_010645.1 membrane protein 2779301 6266687 BAV2567 Bordetella avium 197N membrane protein YP_787075.1 2777715 R 360910 CDS YP_787076.1 187479052 6266061 complement(2779462..2780241) 1 NC_010645.1 Also similar to BAV2550 (31.818 38d.) and BAV2857 (38.519 38d.).; inositol-1-monophosphatase 2780241 suhB2 6266061 suhB2 Bordetella avium 197N inositol-1-monophosphatase YP_787076.1 2779462 R 360910 CDS YP_787077.1 187479053 6267781 2780387..2781190 1 NC_010645.1 tRNA/rRNA methyltransferase 2781190 lasT 6267781 lasT Bordetella avium 197N tRNA/rRNA methyltransferase YP_787077.1 2780387 D 360910 CDS YP_787078.1 187479054 6267279 2781279..2781689 1 NC_010645.1 hypothetical protein 2781689 6267279 BAV2570 Bordetella avium 197N hypothetical protein YP_787078.1 2781279 D 360910 CDS YP_787080.1 187479055 6266065 2783704..2784459 1 NC_010645.1 IclR family transcriptional regulator 2784459 6266065 BAV2574 Bordetella avium 197N IclR family transcriptional regulator YP_787080.1 2783704 D 360910 CDS YP_787081.1 187479056 6266066 complement(2784470..2785303) 1 NC_010645.1 membrane protein 2785303 6266066 BAV2575 Bordetella avium 197N membrane protein YP_787081.1 2784470 R 360910 CDS YP_787082.1 187479057 6266068 complement(2786441..2787499) 1 NC_010645.1 hypothetical protein 2787499 6266068 BAV2577 Bordetella avium 197N hypothetical protein YP_787082.1 2786441 R 360910 CDS YP_787083.1 187479058 6266069 complement(2787496..>2788989) 1 NC_010645.1 hypothetical protein >2788989 6266069 BAV2578 Bordetella avium 197N hypothetical protein YP_787083.1 2787496 R 360910 CDS YP_787084.1 187479059 6266070 complement(2788986..2790278) 1 NC_010645.1 hypothetical protein 2790278 6266070 BAV2579 Bordetella avium 197N hypothetical protein YP_787084.1 2788986 R 360910 CDS YP_787085.1 187479060 6266071 2790591..2791592 1 NC_010645.1 ABC transporter substrate binding protein 2791592 6266071 BAV2580 Bordetella avium 197N ABC transporter substrate binding protein YP_787085.1 2790591 D 360910 CDS YP_787086.1 187479061 6266072 2791596..2792372 1 NC_010645.1 ABC transporter permease 2792372 6266072 BAV2581 Bordetella avium 197N ABC transporter permease YP_787086.1 2791596 D 360910 CDS YP_787087.1 187479062 6266073 2792369..2793190 1 NC_010645.1 ABC transporter ATP-binding protein 2793190 6266073 BAV2582 Bordetella avium 197N ABC transporter ATP-binding protein YP_787087.1 2792369 D 360910 CDS YP_787088.1 187479063 6266074 2793187..2793363 1 NC_010645.1 hypothetical protein 2793363 6266074 BAV2583 Bordetella avium 197N hypothetical protein YP_787088.1 2793187 D 360910 CDS YP_787089.1 187479064 6266075 2793360..2794739 1 NC_010645.1 amidase 2794739 6266075 BAV2584 Bordetella avium 197N amidase YP_787089.1 2793360 D 360910 CDS YP_787090.1 187479065 6266076 <2794736..2795455 1 NC_010645.1 GntR family transcriptional regulator 2795455 6266076 BAV2585 Bordetella avium 197N GntR family transcriptional regulator YP_787090.1 <2794736 D 360910 CDS YP_787091.1 187479066 6266077 complement(2795507..2796073) 1 NC_010645.1 membrane protein 2796073 6266077 BAV2586 Bordetella avium 197N membrane protein YP_787091.1 2795507 R 360910 CDS YP_787092.1 187479067 6266078 2796276..2796656 1 NC_010645.1 hypothetical protein 2796656 6266078 BAV2587 Bordetella avium 197N hypothetical protein YP_787092.1 2796276 D 360910 CDS YP_787093.1 187479068 6266079 2796725..2797276 1 NC_010645.1 chromate reductase 2797276 6266079 BAV2588 Bordetella avium 197N chromate reductase YP_787093.1 2796725 D 360910 CDS YP_787094.1 187479069 6266080 complement(2797473..>2797634) 1 NC_010645.1 ; Doubtful CDS.; hypothetical protein >2797634 6266080 BAV2589 Bordetella avium 197N hypothetical protein YP_787094.1 2797473 R 360910 CDS YP_787095.1 187479070 6266081 2798612..2801239 1 NC_010645.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 2801239 mutS 6266081 mutS Bordetella avium 197N DNA mismatch repair protein MutS YP_787095.1 2798612 D 360910 CDS YP_787096.1 187479071 6267406 2801236..2802423 1 NC_010645.1 hypothetical protein 2802423 6267406 BAV2591 Bordetella avium 197N hypothetical protein YP_787096.1 2801236 D 360910 CDS YP_787097.1 187479072 6266082 complement(2802507..2802695) 1 NC_010645.1 hypothetical protein 2802695 6266082 BAV2592 Bordetella avium 197N hypothetical protein YP_787097.1 2802507 R 360910 CDS YP_787098.1 187479073 6266083 complement(2802911..2804029) 1 NC_010645.1 lipoprotein 2804029 6266083 BAV2593 Bordetella avium 197N lipoprotein YP_787098.1 2802911 R 360910 CDS YP_787099.1 187479074 6266084 complement(2804046..2804951) 1 NC_010645.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2804951 dapA2 6266084 dapA2 Bordetella avium 197N dihydrodipicolinate synthase YP_787099.1 2804046 R 360910 CDS YP_787100.1 187479075 6266854 complement(2805031..2805711) 1 NC_010645.1 membrane-associated peptidase 2805711 6266854 BAV2595 Bordetella avium 197N membrane-associated peptidase YP_787100.1 2805031 R 360910 CDS YP_787101.1 187479076 6266085 complement(2805762..2806388) 1 NC_010645.1 hypothetical protein 2806388 6266085 BAV2596 Bordetella avium 197N hypothetical protein YP_787101.1 2805762 R 360910 CDS YP_787102.1 187479077 6266087 2807536..2808099 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 2808099 6266087 BAV2598 Bordetella avium 197N hypothetical protein YP_787102.1 2807536 D 360910 CDS YP_787103.1 187479078 6266088 2808096..2808860 1 NC_010645.1 hypothetical protein 2808860 6266088 BAV2599 Bordetella avium 197N hypothetical protein YP_787103.1 2808096 D 360910 CDS YP_787104.1 187479079 6266089 complement(2808871..2809164) 1 NC_010645.1 . Seems to be unique to the bordetellae; hypothetical protein 2809164 6266089 BAV2600 Bordetella avium 197N hypothetical protein YP_787104.1 2808871 R 360910 CDS YP_787105.1 187479080 6266092 complement(2810185..2810514) 1 NC_010645.1 carboxymuconolactone decarboxylase 2810514 6266092 BAV2603 Bordetella avium 197N carboxymuconolactone decarboxylase YP_787105.1 2810185 R 360910 CDS YP_787106.1 187479081 6266093 2810659..2811624 1 NC_010645.1 AraC family transcriptional regulator 2811624 6266093 BAV2604 Bordetella avium 197N AraC family transcriptional regulator YP_787106.1 2810659 D 360910 CDS YP_787107.1 187479082 6267860 2811909..2813369 1 NC_010645.1 cardiolipin synthetase 2813369 cls 6267860 cls Bordetella avium 197N cardiolipin synthetase YP_787107.1 2811909 D 360910 CDS YP_787108.1 187479083 6266795 complement(2813432..>2813545) 1 NC_010645.1 hypothetical protein >2813545 6266795 BAV2606 Bordetella avium 197N hypothetical protein YP_787108.1 2813432 R 360910 CDS YP_787109.1 187479084 6266095 complement(2813629..2814768) 1 NC_010645.1 subtilisin-like protease 2814768 6266095 BAV2607 Bordetella avium 197N subtilisin-like protease YP_787109.1 2813629 R 360910 CDS YP_787110.1 187479085 6267845 2815389..2816675 1 NC_010645.1 phospholipase 2816675 6267845 BAV2608 Bordetella avium 197N phospholipase YP_787110.1 2815389 D 360910 CDS YP_787111.1 187479086 6266097 2816761..2817324 1 NC_010645.1 hypothetical protein 2817324 6266097 BAV2609 Bordetella avium 197N hypothetical protein YP_787111.1 2816761 D 360910 CDS YP_787112.1 187479087 6266098 complement(2817511..2819061) 1 NC_010645.1 ABC transporter substrate-binding protein 2819061 6266098 BAV2610 Bordetella avium 197N ABC transporter substrate-binding protein YP_787112.1 2817511 R 360910 CDS YP_787113.1 187479088 6266099 complement(2819176..2819838) 1 NC_010645.1 GntR family transcriptional regulator 2819838 6266099 BAV2611 Bordetella avium 197N GntR family transcriptional regulator YP_787113.1 2819176 R 360910 CDS YP_787114.1 187479089 6266100 complement(2819873..2821528) 1 NC_010645.1 ABC transporter ATP-binding protein 2821528 6266100 BAV2612 Bordetella avium 197N ABC transporter ATP-binding protein YP_787114.1 2819873 R 360910 CDS YP_787115.1 187479090 6266101 complement(2821525..2822346) 1 NC_010645.1 ABC transporter permease 2822346 6266101 BAV2613 Bordetella avium 197N ABC transporter permease YP_787115.1 2821525 R 360910 CDS YP_787116.1 187479091 6266102 complement(2822343..2823287) 1 NC_010645.1 ABC transporter permease 2823287 6266102 BAV2614 Bordetella avium 197N ABC transporter permease YP_787116.1 2822343 R 360910 CDS YP_787117.1 187479092 6266103 complement(2823322..2824188) 1 NC_010645.1 poly(aspartic acid) hydrolase 2824188 6266103 BAV2615 Bordetella avium 197N poly(aspartic acid) hydrolase YP_787117.1 2823322 R 360910 CDS YP_787118.1 187479093 6266104 complement(2824360..2824848) 1 NC_010645.1 AsnC/Lrp family transcriptional regulator 2824848 6266104 BAV2616 Bordetella avium 197N AsnC/Lrp family transcriptional regulator YP_787118.1 2824360 R 360910 CDS YP_787119.1 187479094 6266105 complement(2824890..2826257) 1 NC_010645.1 Partially similar to Salmonella typhimurium alanine racemase, catabolic DadX SWALL:ALR2_SALTY (SWALL:P06191) (356 aa).; membrane protein 2826257 6266105 BAV2617 Bordetella avium 197N membrane protein YP_787119.1 2824890 R 360910 CDS YP_787120.1 187479095 6266108 2827668..2827964 1 NC_010645.1 Also similar to BAV2796 (59.1 38d); acid-resistance protein 2827964 hdeA 6266108 hdeA Bordetella avium 197N acid-resistance protein YP_787120.1 2827668 D 360910 CDS YP_787121.1 187479096 6266109 complement(2829488..2830657) 1 NC_010645.1 cellulose acetylase subunit 2830657 wssI 6266109 wssI Bordetella avium 197N cellulose acetylase subunit YP_787121.1 2829488 R 360910 CDS YP_787122.1 187479097 6267942 complement(2830669..2832078) 1 NC_010645.1 cellulose acetylase subunit 2832078 wssH 6267942 wssH Bordetella avium 197N cellulose acetylase subunit YP_787122.1 2830669 R 360910 CDS YP_787123.1 187479098 6267941 complement(2832154..2832822) 1 NC_010645.1 cellulose acetylase subunit 2832822 wssG 6267941 wssG Bordetella avium 197N cellulose acetylase subunit YP_787123.1 2832154 R 360910 CDS YP_787124.1 187479099 6267940 complement(2832838..2833503) 1 NC_010645.1 cellulose biosynthesis protein 2833503 wssF 6267940 wssF Bordetella avium 197N cellulose biosynthesis protein YP_787124.1 2832838 R 360910 CDS YP_787125.1 187479100 6267939 complement(2833534..2837505) 1 NC_010645.1 cellulose synthase protein C 2837505 bscS 6267939 bscS Bordetella avium 197N cellulose synthase protein C YP_787125.1 2833534 R 360910 CDS YP_787126.1 187479101 6266742 complement(2837502..2838698) 1 NC_010645.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 2838698 bcsZ 6266742 bcsZ Bordetella avium 197N endo-1,4-D-glucanase YP_787126.1 2837502 R 360910 CDS YP_787127.1 187479102 6266694 complement(2838695..2840989) 1 NC_010645.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 2840989 bcsB2 6266694 bcsB2 Bordetella avium 197N cellulose synthase regulator protein YP_787127.1 2838695 R 360910 CDS YP_787128.1 187479103 6266692 complement(2840992..2843253) 1 NC_010645.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 2843253 bcsB2 6266692 bcsB2 Bordetella avium 197N cellulose synthase regulator protein YP_787128.1 2840992 R 360910 CDS YP_787129.1 187479104 6266693 complement(2843250..2845451) 1 NC_010645.1 cellulose synthase catalytic subunit 2845451 bcsA 6266693 bcsA Bordetella avium 197N cellulose synthase catalytic subunit YP_787129.1 2843250 R 360910 CDS YP_787130.1 187479105 6266691 complement(2845448..2846215) 1 NC_010645.1 cellulose biosynthesis protein 2846215 wssA 6266691 wssA Bordetella avium 197N cellulose biosynthesis protein YP_787130.1 2845448 R 360910 CDS YP_787131.1 187479106 6267938 complement(2846212..2846964) 1 NC_010645.1 cellulose biosynthesis protein 2846964 6267938 BAV2633 Bordetella avium 197N cellulose biosynthesis protein YP_787131.1 2846212 R 360910 CDS YP_787132.1 187479107 6266110 complement(2847004..>2847465) 1 NC_010645.1 cellulose synthase biosynthesis protein >2847465 acsD 6266110 acsD Bordetella avium 197N cellulose synthase biosynthesis protein YP_787132.1 2847004 R 360910 CDS YP_787133.1 187479108 6266594 2848061..2849479 1 NC_010645.1 capsular polysaccharide biosynthesis mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase 2849479 algA 6266594 algA Bordetella avium 197N capsular polysaccharide biosynthesis mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase YP_787133.1 2848061 D 360910 CDS YP_787134.1 187479109 6266613 2849487..2850902 1 NC_010645.1 capsular polysaccharide biosynthesis glucosyltransferase 2850902 6266613 BAV2636 Bordetella avium 197N capsular polysaccharide biosynthesis glucosyltransferase YP_787134.1 2849487 D 360910 CDS YP_787135.1 187479110 6266111 complement(2850913..>2852193) 1 NC_010645.1 ; Weakly similar to the C-terminal region of enterics sucrose operon repressor ScrR SWALL:SCRR_SALTY (SWALL:P37077) (334 aa) fasta scores: E(): 3.1, 30.5 38d in 177 aa; capsular polysaccharide biosynthesis protein >2852193 6266111 BAV2637 Bordetella avium 197N capsular polysaccharide biosynthesis protein YP_787135.1 2850913 R 360910 CDS YP_787136.1 187479111 6266112 complement(2852190..2853005) 1 NC_010645.1 capsular polysaccharide biosynthesis glucosyltransferase 2853005 6266112 BAV2638 Bordetella avium 197N capsular polysaccharide biosynthesis glucosyltransferase YP_787136.1 2852190 R 360910 CDS YP_787137.1 187479112 6266113 <2853193..2854287 1 NC_010645.1 capsular polysaccharide export protein 2854287 6266113 BAV2639 Bordetella avium 197N capsular polysaccharide export protein YP_787137.1 <2853193 D 360910 CDS YP_787138.1 187479113 6266114 2854329..2855090 1 NC_010645.1 capsular polysaccharide biosynthesis protein 2855090 6266114 BAV2640 Bordetella avium 197N capsular polysaccharide biosynthesis protein YP_787138.1 2854329 D 360910 CDS YP_787139.1 187479114 6266115 2855106..2856779 1 NC_010645.1 capsular polysaccharide biosynthesis oxidoreductase 2856779 6266115 BAV2641 Bordetella avium 197N capsular polysaccharide biosynthesis oxidoreductase YP_787139.1 2855106 D 360910 CDS YP_787140.1 187479115 6266116 2856776..2857714 1 NC_010645.1 capsular polysaccharide biosynthesis protein 2857714 6266116 BAV2642 Bordetella avium 197N capsular polysaccharide biosynthesis protein YP_787140.1 2856776 D 360910 CDS YP_787141.1 187479116 6266117 2857711..2858748 1 NC_010645.1 capsular polysaccharide biosynthesis protein 2858748 6266117 BAV2643 Bordetella avium 197N capsular polysaccharide biosynthesis protein YP_787141.1 2857711 D 360910 CDS YP_787142.1 187479117 6266118 complement(2858720..>2859787) 1 NC_010645.1 capsular polysaccharide biosynthesis O-acetyl transferase >2859787 6266118 BAV2644 Bordetella avium 197N capsular polysaccharide biosynthesis O-acetyl transferase YP_787142.1 2858720 R 360910 CDS YP_787143.1 187479118 6266119 complement(2859806..2861062) 1 NC_010645.1 capsular polysaccharide biosynthesis protein 2861062 6266119 BAV2645 Bordetella avium 197N capsular polysaccharide biosynthesis protein YP_787143.1 2859806 R 360910 CDS YP_787144.1 187479119 6266120 complement(2861059..2862252) 1 NC_010645.1 capsular polysaccharide biosynthesis glycosyl transferase 2862252 6266120 BAV2646 Bordetella avium 197N capsular polysaccharide biosynthesis glycosyl transferase YP_787144.1 2861059 R 360910 CDS YP_787145.1 187479120 6266121 complement(2862260..2863192) 1 NC_010645.1 capsular polysaccharide biosynthesis glycosyl transferase 2863192 6266121 BAV2647 Bordetella avium 197N capsular polysaccharide biosynthesis glycosyl transferase YP_787145.1 2862260 R 360910 CDS YP_787146.1 187479121 6266122 complement(2863189..2865462) 1 NC_010645.1 capsular polysaccharide biosynthesis protein 2865462 6266122 BAV2648 Bordetella avium 197N capsular polysaccharide biosynthesis protein YP_787146.1 2863189 R 360910 CDS YP_787147.1 187479122 6266123 complement(2865459..>2866757) 1 NC_010645.1 capsular polysaccharide biosynthesis protein >2866757 6266123 BAV2649 Bordetella avium 197N capsular polysaccharide biosynthesis protein YP_787147.1 2865459 R 360910 CDS YP_787148.1 187479123 6266124 complement(2866754..2867830) 1 NC_010645.1 capsular polysaccharide biosynthesis protein 2867830 6266124 BAV2650 Bordetella avium 197N capsular polysaccharide biosynthesis protein YP_787148.1 2866754 R 360910 CDS YP_787149.1 187479124 6266125 complement(2867827..>2869212) 1 NC_010645.1 ; Similar to N-terminus of many polysaccharide biosynthesis proteins; capsular polysaccharide biosynthesis protein >2869212 6266125 BAV2651 Bordetella avium 197N capsular polysaccharide biosynthesis protein YP_787149.1 2867827 R 360910 CDS YP_787150.1 187479125 6266126 complement(2869548..2870687) 1 NC_010645.1 capsular polysaccharide biosynthesis acyltransferase; acetyltransferase 2870687 6266126 BAV2652 Bordetella avium 197N acetyltransferase YP_787150.1 2869548 R 360910 CDS YP_787151.1 187479126 6266127 complement(2870672..2871040) 1 NC_010645.1 capsular polysaccharide biosynthesis protein 2871040 6266127 BAV2653 Bordetella avium 197N capsular polysaccharide biosynthesis protein YP_787151.1 2870672 R 360910 CDS YP_787152.1 187479127 6267868 complement(2871784..2872542) 1 NC_010645.1 iron ABC transporter ATP-binding protein 2872542 6267868 BAV2654 Bordetella avium 197N iron ABC transporter ATP-binding protein YP_787152.1 2871784 R 360910 CDS YP_787153.1 187479128 6266129 complement(2872539..2873495) 1 NC_010645.1 iron ABC transporter permease 2873495 6266129 BAV2655 Bordetella avium 197N iron ABC transporter permease YP_787153.1 2872539 R 360910 CDS YP_787154.1 187479129 6266130 complement(2873488..>2874486) 1 NC_010645.1 iron ABC transporter permease >2874486 6266130 BAV2656 Bordetella avium 197N iron ABC transporter permease YP_787154.1 2873488 R 360910 CDS YP_787155.1 187479130 6266131 complement(2874487..2875404) 1 NC_010645.1 iron ABC transporter substrate-binding protein 2875404 6266131 BAV2657 Bordetella avium 197N iron ABC transporter substrate-binding protein YP_787155.1 2874487 R 360910 CDS YP_787156.1 187479131 6266132 complement(2875645..2876073) 1 NC_010645.1 preprotein translocase subunit SecG 2876073 secG 6266132 secG Bordetella avium 197N preprotein translocase subunit SecG YP_787156.1 2875645 R 360910 CDS YP_787157.1 187479132 6267750 complement(2876095..2876844) 1 NC_010645.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 2876844 tpiA 6267750 tpiA Bordetella avium 197N triosephosphate isomerase YP_787157.1 2876095 R 360910 CDS YP_787158.1 187479133 6267822 complement(2876978..2877952) 1 NC_010645.1 zinc-binding dehydrogenase 2877952 6267822 BAV2660 Bordetella avium 197N zinc-binding dehydrogenase YP_787158.1 2876978 R 360910 CDS YP_787159.1 187479134 6267883 2878795..2879466 1 NC_010645.1 One of 11 fimbrial subunits; fimbrial subunit 2879466 6267883 BAV2661 Bordetella avium 197N fimbrial subunit YP_787159.1 2878795 D 360910 CDS YP_787160.1 187479135 6266134 2879494..2879685 1 NC_010645.1 Doubtful CDS.; hypothetical protein 2879685 6266134 BAV2661A Bordetella avium 197N hypothetical protein YP_787160.1 2879494 D 360910 CDS YP_787161.1 187479136 6266135 2879701..2879853 1 NC_010645.1 hypothetical protein 2879853 6266135 BAV2662 Bordetella avium 197N hypothetical protein YP_787161.1 2879701 D 360910 CDS YP_787162.1 187479137 6266136 2880213..2880797 1 NC_010645.1 hypothetical protein 2880797 6266136 BAV2663 Bordetella avium 197N hypothetical protein YP_787162.1 2880213 D 360910 CDS YP_787163.1 187479138 6266137 complement(2880791..2882008) 1 NC_010645.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 2882008 tdcB 6266137 tdcB Bordetella avium 197N threonine dehydratase YP_787163.1 2880791 R 360910 CDS YP_787164.1 187479139 6267793 complement(2882020..2882733) 1 NC_010645.1 lipoprotein 2882733 6267793 BAV2665 Bordetella avium 197N lipoprotein YP_787164.1 2882020 R 360910 CDS YP_787165.1 187479140 6266138 2883094..2884422 1 NC_010645.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2884422 6266138 BAV2666 Bordetella avium 197N amidase YP_787165.1 2883094 D 360910 CDS YP_787166.1 187479141 6266139 complement(2884562..2886718) 1 NC_010645.1 polynucleotide phosphorylase/polyadenylase 2886718 pnp 6266139 pnp Bordetella avium 197N polynucleotide phosphorylase/polyadenylase YP_787166.1 2884562 R 360910 CDS YP_787167.1 187479142 6267549 complement(2886808..2887077) 1 NC_010645.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 2887077 rpsO 6267549 rpsO Bordetella avium 197N 30S ribosomal protein S15 YP_787167.1 2886808 R 360910 CDS YP_787168.1 187479143 6267722 2887323..2887841 1 NC_010645.1 hypothetical protein 2887841 6267722 BAV2669 Bordetella avium 197N hypothetical protein YP_787168.1 2887323 D 360910 CDS YP_787169.1 187479144 6266140 complement(2887890..2888657) 1 NC_010645.1 CDP-diacylglycerol--serine O-phosphatidyltransferase 2888657 pssA 6266140 pssA Bordetella avium 197N CDP-diacylglycerol--serine O-phosphatidyltransferase YP_787169.1 2887890 R 360910 CDS YP_787170.1 187479145 6267587 complement(2888827..2889843) 1 NC_010645.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2889843 ilvC 6267587 ilvC Bordetella avium 197N ketol-acid reductoisomerase YP_787170.1 2888827 R 360910 CDS YP_787171.1 187479146 6267236 complement(2889908..2890399) 1 NC_010645.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2890399 ilvH 6267236 ilvH Bordetella avium 197N acetolactate synthase 3 regulatory subunit YP_787171.1 2889908 R 360910 CDS YP_787172.1 187479147 6266741 complement(2890410..2892125) 1 NC_010645.1 Also similar to BAV3387 (46.528 38d); acetolactate synthase isozyme III large subunit 2892125 ilvI1 6266741 ilvI1 Bordetella avium 197N acetolactate synthase isozyme III large subunit YP_787172.1 2890410 R 360910 CDS YP_787173.1 187479148 6267241 2892619..2894826 1 NC_010645.1 membrane protein 2894826 6267241 BAV2674 Bordetella avium 197N membrane protein YP_787173.1 2892619 D 360910 CDS YP_787174.1 187479149 6266141 complement(2895020..2895793) 1 NC_010645.1 hypothetical protein 2895793 6266141 BAV2675 Bordetella avium 197N hypothetical protein YP_787174.1 2895020 R 360910 CDS YP_787175.1 187479150 6266142 complement(2895813..2896595) 1 NC_010645.1 D-beta-hydroxybutyrate dehydrogenase 2896595 hbdH 6266142 hbdH Bordetella avium 197N D-beta-hydroxybutyrate dehydrogenase YP_787175.1 2895813 R 360910 CDS YP_787176.1 187479151 6267880 complement(2897158..2897685) 1 NC_010645.1 detoxifying sulfurtransferase 2897685 6267880 BAV2677 Bordetella avium 197N detoxifying sulfurtransferase YP_787176.1 2897158 R 360910 CDS YP_787177.1 187479152 6266143 complement(2897708..2898019) 1 NC_010645.1 ArsR family transcriptional regulator 2898019 6266143 BAV2678 Bordetella avium 197N ArsR family transcriptional regulator YP_787177.1 2897708 R 360910 CDS YP_787178.1 187479153 6266144 complement(2898125..2899180) 1 NC_010645.1 hypothetical protein 2899180 6266144 BAV2679 Bordetella avium 197N hypothetical protein YP_787178.1 2898125 R 360910 CDS YP_787179.1 187479154 6266145 <2899331..2899525 1 NC_010645.1 ; Doubtful CDS.; hypothetical protein 2899525 6266145 BAV2680 Bordetella avium 197N hypothetical protein YP_787179.1 <2899331 D 360910 CDS YP_787180.1 187479155 6266146 2899832..2900449 1 NC_010645.1 signaling protein 2900449 6266146 BAV2681 Bordetella avium 197N signaling protein YP_787180.1 2899832 D 360910 CDS YP_787181.1 187479156 6266147 complement(2900472..2900621) 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 2900621 6266147 BAV2682 Bordetella avium 197N hypothetical protein YP_787181.1 2900472 R 360910 CDS YP_787182.1 187479157 6266148 2900948..2901268 1 NC_010645.1 Virulence protein 2901268 vrg-6 6266148 vrg-6 Bordetella avium 197N Virulence protein YP_787182.1 2900948 D 360910 CDS YP_787183.1 187479158 6267930 complement(2901459..2901707) 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 2901707 6267930 BAV2684 Bordetella avium 197N hypothetical protein YP_787183.1 2901459 R 360910 CDS YP_787184.1 187479159 6266149 complement(2902138..2903487) 1 NC_010645.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2903487 serS 6266149 serS Bordetella avium 197N seryl-tRNA synthetase YP_787184.1 2902138 R 360910 CDS YP_787185.1 187479160 6267755 2904204..2905670 1 NC_010645.1 Also similar to BAV2688 (55.511 38d).; arginine/ornithine antiporter 2905670 arcD1 6267755 arcD1 Bordetella avium 197N arginine/ornithine antiporter YP_787185.1 2904204 D 360910 CDS YP_787186.1 187479161 6266639 2905720..2908098 1 NC_010645.1 biodegradative arginine decarboxylase 2908098 adiA 6266639 adiA Bordetella avium 197N biodegradative arginine decarboxylase YP_787186.1 2905720 D 360910 CDS YP_787187.1 187479162 6266604 <2908117..2909670 1 NC_010645.1 Also similar to BAV2686 (55.511 38d).; arginine/ornithine antiporter 2909670 arcD2 6266604 arcD2 Bordetella avium 197N arginine/ornithine antiporter YP_787187.1 <2908117 D 360910 CDS YP_787188.1 187479163 6266640 2909839..2910081 1 NC_010645.1 Partial CDS. Similar to the C-terminal region of many transposases.; transposase (partial) 2910081 6266640 BAV2689 Bordetella avium 197N transposase (partial) YP_787188.1 2909839 D 360910 CDS YP_787189.1 187479164 6266150 2910624..2910764 1 NC_010645.1 hypothetical protein 2910764 6266150 BAV2690 Bordetella avium 197N hypothetical protein YP_787189.1 2910624 D 360910 CDS YP_787190.1 187479165 6266152 complement(2912380..2913759) 1 NC_010645.1 recombination factor protein RarA 2913759 6266152 BAV2692 Bordetella avium 197N recombination factor protein RarA YP_787190.1 2912380 R 360910 CDS YP_787191.1 187479166 6266153 2913851..2915110 1 NC_010645.1 D-serine deaminase 2915110 dsd 6266153 dsd Bordetella avium 197N D-serine deaminase YP_787191.1 2913851 D 360910 CDS YP_787192.1 187479167 6266907 complement(2915390..2916019) 1 NC_010645.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 2916019 lolA 6266907 lolA Bordetella avium 197N outer-membrane lipoprotein carrier protein YP_787192.1 2915390 R 360910 CDS YP_787193.1 187479168 6267303 complement(2916019..2918376) 1 NC_010645.1 DNA translocase 2918376 ftsK 6267303 ftsK Bordetella avium 197N DNA translocase YP_787193.1 2916019 R 360910 CDS YP_787194.1 187479169 6267038 2918418..2919371 1 NC_010645.1 thioredoxin reductase 2919371 trxB 6267038 trxB Bordetella avium 197N thioredoxin reductase YP_787194.1 2918418 D 360910 CDS YP_787195.1 187479170 6267900 2919358..2920026 1 NC_010645.1 hypothetical protein 2920026 6267900 BAV2697 Bordetella avium 197N hypothetical protein YP_787195.1 2919358 D 360910 CDS YP_787196.1 187479171 6266154 2920023..2920352 1 NC_010645.1 quaternary ammonium compound-resistance protein 2920352 qacH 6266154 qacH Bordetella avium 197N quaternary ammonium compound-resistance protein YP_787196.1 2920023 D 360910 CDS YP_787197.1 187479172 6267617 complement(2920357..2922423) 1 NC_010645.1 sodium/solute symporter 2922423 6267617 BAV2699 Bordetella avium 197N sodium/solute symporter YP_787197.1 2920357 R 360910 CDS YP_787198.1 187479173 6266155 complement(2922423..2922668) 1 NC_010645.1 membrane protein 2922668 6266155 BAV2700 Bordetella avium 197N membrane protein YP_787198.1 2922423 R 360910 CDS YP_787199.1 187479174 6266156 2923366..2925150 1 NC_010645.1 potassium-transporting ATPase A chain 2925150 kdpA 6266156 kdpA Bordetella avium 197N potassium-transporting ATPase A chain YP_787199.1 2923366 D 360910 CDS YP_787200.1 187479175 6267264 2925170..2927305 1 NC_010645.1 potassium-transporting ATPase B chain 2927305 kdpB 6267264 kdpB Bordetella avium 197N potassium-transporting ATPase B chain YP_787200.1 2925170 D 360910 CDS YP_787201.1 187479176 6267265 2927324..2927908 1 NC_010645.1 potassium-transporting ATPase C chain 2927908 kdpC 6267265 kdpC Bordetella avium 197N potassium-transporting ATPase C chain YP_787201.1 2927324 D 360910 CDS YP_787202.1 187479177 6267266 <2927924..2930692 1 NC_010645.1 two component sensor kinase 2930692 kdpD 6267266 kdpD Bordetella avium 197N two component sensor kinase YP_787202.1 <2927924 D 360910 CDS YP_787203.1 187479178 6267267 2930698..2931390 1 NC_010645.1 two component response regulator 2931390 kdpE 6267267 kdpE Bordetella avium 197N two component response regulator YP_787203.1 2930698 D 360910 CDS YP_787204.1 187479179 6267268 2931504..2932247 1 NC_010645.1 hypothetical protein 2932247 6267268 BAV2706 Bordetella avium 197N hypothetical protein YP_787204.1 2931504 D 360910 CDS YP_787205.1 187479180 6266157 <2932321..2932572 1 NC_010645.1 transposase (partial) 2932572 6266157 BAV2707 Bordetella avium 197N transposase (partial) YP_787205.1 <2932321 D 360910 CDS YP_787206.1 187479181 6266158 <2932575..2933462 1 NC_010645.1 ; Also similar to BAV0110 (37.847 38d), BAV2594 (30.241 38d); dihydrodipicolinate synthase 2933462 dapA3 6266158 dapA3 Bordetella avium 197N dihydrodipicolinate synthase YP_787206.1 <2932575 D 360910 CDS YP_787207.1 187479182 6266855 complement(2933473..2934729) 1 NC_010645.1 isocitrate dehydrogenase (NADP) 2934729 icd 6266855 icd Bordetella avium 197N isocitrate dehydrogenase (NADP) YP_787207.1 2933473 R 360910 CDS YP_787208.1 187479183 6267230 2934888..2935313 1 NC_010645.1 hypothetical protein 2935313 6267230 BAV2710 Bordetella avium 197N hypothetical protein YP_787208.1 2934888 D 360910 CDS YP_787209.1 187479184 6266159 2935425..2936291 1 NC_010645.1 ATPase 2936291 6266159 BAV2711 Bordetella avium 197N ATPase YP_787209.1 2935425 D 360910 CDS YP_787210.1 187479185 6266160 2936297..2937469 1 NC_010645.1 hypothetical protein 2937469 6266160 BAV2712 Bordetella avium 197N hypothetical protein YP_787210.1 2936297 D 360910 CDS YP_787211.1 187479186 6266161 complement(2937479..2937799) 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 2937799 6266161 BAV2713 Bordetella avium 197N hypothetical protein YP_787211.1 2937479 R 360910 CDS YP_787212.1 187479187 6266162 2938084..2940834 1 NC_010645.1 zinc protease 2940834 6266162 BAV2714 Bordetella avium 197N zinc protease YP_787212.1 2938084 D 360910 CDS YP_787213.1 187479188 6266163 complement(2941020..2942141) 1 NC_010645.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 2942141 dnaJ 6266163 dnaJ Bordetella avium 197N chaperone protein DnaJ YP_787213.1 2941020 R 360910 CDS YP_787214.1 187479189 6266892 complement(2942254..2944188) 1 NC_010645.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 2944188 dnaK 6266892 dnaK Bordetella avium 197N molecular chaperone DnaK YP_787214.1 2942254 R 360910 CDS YP_787215.1 187479190 6266893 complement(2944268..2944642) 1 NC_010645.1 thioredoxin 2944642 6266893 BAV2717 Bordetella avium 197N thioredoxin YP_787215.1 2944268 R 360910 CDS YP_787216.1 187479191 6266164 complement(2944668..2945204) 1 NC_010645.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 2945204 grpE 6266164 grpE Bordetella avium 197N heat shock protein GrpE YP_787216.1 2944668 R 360910 CDS YP_787217.1 187479192 6267118 complement(2945322..2945480) 1 NC_010645.1 hypothetical protein 2945480 6267118 BAV2719 Bordetella avium 197N hypothetical protein YP_787217.1 2945322 R 360910 CDS YP_787218.1 187479193 6266165 complement(2945511..>2946605) 1 NC_010645.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase >2946605 hemH 6266165 hemH Bordetella avium 197N ferrochelatase YP_787218.1 2945511 R 360910 CDS YP_787219.1 187479194 6267157 complement(2946653..2947657) 1 NC_010645.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 2947657 hrcA 6267157 hrcA Bordetella avium 197N heat-inducible transcription repressor YP_787219.1 2946653 R 360910 CDS YP_787220.1 187479195 6267205 2947767..2948666 1 NC_010645.1 catalyzes the phosphorylation of NAD to NADP; NAD(+)/NADH kinase family protein 2948666 ppnK 6267205 ppnK Bordetella avium 197N NAD(+)/NADH kinase family protein YP_787220.1 2947767 D 360910 CDS YP_787221.1 187479196 6267412 2948685..2950337 1 NC_010645.1 DNA repair protein 2950337 radB 6267412 radB Bordetella avium 197N DNA repair protein YP_787221.1 2948685 D 360910 CDS YP_787222.1 187479197 6267620 complement(2950391..2950810) 1 NC_010645.1 ferric ion uptake regulator 2950810 fur 6267620 fur Bordetella avium 197N ferric ion uptake regulator YP_787222.1 2950391 R 360910 CDS YP_787223.1 187479198 6267047 2951038..2951568 1 NC_010645.1 outer membrane lipoprotein 2951568 omlA 6267047 omlA Bordetella avium 197N outer membrane lipoprotein YP_787223.1 2951038 D 360910 CDS YP_787224.1 187479199 6267457 2951586..2952377 1 NC_010645.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 2952377 dapB 6267457 dapB Bordetella avium 197N dihydrodipicolinate reductase YP_787224.1 2951586 D 360910 CDS YP_787225.1 187479200 6266856 complement(2952406..2953422) 1 NC_010645.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 2953422 murB 6266856 murB Bordetella avium 197N UDP-N-acetylenolpyruvoylglucosamine reductase YP_787225.1 2952406 R 360910 CDS YP_787226.1 187479201 6267857 complement(2954184..2954963) 1 NC_010645.1 Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 2954963 dsbG 6267857 dsbG Bordetella avium 197N disulfide isomerase/thiol-disulfide oxidase YP_787226.1 2954184 R 360910 CDS YP_787227.1 187479202 6266906 complement(2954966..2955784) 1 NC_010645.1 thiol:disulfide interchange protein 2955784 ccmG 6266906 ccmG Bordetella avium 197N thiol:disulfide interchange protein YP_787227.1 2954966 R 360910 CDS YP_787228.1 187479203 6266767 complement(2956014..2956523) 1 NC_010645.1 hypothetical protein 2956523 6266767 BAV2730 Bordetella avium 197N hypothetical protein YP_787228.1 2956014 R 360910 CDS YP_787229.1 187479204 6266166 2956812..2957513 1 NC_010645.1 GntR family transcriptional regulator 2957513 6266166 BAV2731 Bordetella avium 197N GntR family transcriptional regulator YP_787229.1 2956812 D 360910 CDS YP_787230.1 187479205 6266167 2957510..2960119 1 NC_010645.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2960119 acnA4 6266167 acnA4 Bordetella avium 197N aconitate hydratase YP_787230.1 2957510 D 360910 CDS YP_787231.1 187479206 6266586 2960164..2961342 1 NC_010645.1 hypothetical protein 2961342 6266586 BAV2733 Bordetella avium 197N hypothetical protein YP_787231.1 2960164 D 360910 CDS YP_787232.1 187479207 6266168 2961424..2962032 1 NC_010645.1 amino acid efflux protein 2962032 6266168 BAV2734 Bordetella avium 197N amino acid efflux protein YP_787232.1 2961424 D 360910 CDS YP_787233.1 187479208 6267858 complement(2962404..2963183) 1 NC_010645.1 subunit of carbon monoxide dehydrogenase 2963183 6267858 BAV2735 Bordetella avium 197N subunit of carbon monoxide dehydrogenase YP_787233.1 2962404 R 360910 CDS YP_787234.1 187479209 6266170 complement(2963180..2965573) 1 NC_010645.1 carbon monoxide dehydrogenase large subunit 2965573 cutL 6266170 cutL Bordetella avium 197N carbon monoxide dehydrogenase large subunit YP_787234.1 2963180 R 360910 CDS YP_787235.1 187479210 6266823 complement(2965560..2966069) 1 NC_010645.1 carbon monoxide dehydrogenase small subunit 2966069 coxS 6266823 coxS Bordetella avium 197N carbon monoxide dehydrogenase small subunit YP_787235.1 2965560 R 360910 CDS YP_787236.1 187479211 6266805 complement(2966059..2966934) 1 NC_010645.1 carbon monoxide dehydrogenase medium chain 2966934 coxM 6266805 coxM Bordetella avium 197N carbon monoxide dehydrogenase medium chain YP_787236.1 2966059 R 360910 CDS YP_787237.1 187479212 6266804 complement(2966946..2967938) 1 NC_010645.1 4,5-dihydroxyphthalate decarboxylase 2967938 6266804 BAV2739 Bordetella avium 197N 4,5-dihydroxyphthalate decarboxylase YP_787237.1 2966946 R 360910 CDS YP_787238.1 187479213 6266171 complement(2967948..2968943) 1 NC_010645.1 hypothetical protein 2968943 6266171 BAV2740 Bordetella avium 197N hypothetical protein YP_787238.1 2967948 R 360910 CDS YP_787239.1 187479214 6266172 complement(2969508..2970134) 1 NC_010645.1 isochorismatase family hydrolase 2970134 6266172 BAV2741 Bordetella avium 197N isochorismatase family hydrolase YP_787239.1 2969508 R 360910 CDS YP_787240.1 187479215 6266173 complement(2970167..2971198) 1 NC_010645.1 hypothetical protein 2971198 6266173 BAV2742 Bordetella avium 197N hypothetical protein YP_787240.1 2970167 R 360910 CDS YP_787241.1 187479216 6266174 complement(2971202..2972029) 1 NC_010645.1 hydrolase 2972029 6266174 BAV2743 Bordetella avium 197N hydrolase YP_787241.1 2971202 R 360910 CDS YP_787242.1 187479217 6266175 complement(2972042..2972794) 1 NC_010645.1 Also similar to BAV1531 (79.68 38d); maleate cis-trans isomerase 2972794 maiA2 6266175 maiA2 Bordetella avium 197N maleate cis-trans isomerase YP_787242.1 2972042 R 360910 CDS YP_787243.1 187479218 6267327 complement(2972821..2973783) 1 NC_010645.1 decarboxylase 2973783 6267327 BAV2745 Bordetella avium 197N decarboxylase YP_787243.1 2972821 R 360910 CDS YP_787244.1 187479219 6266176 complement(2974075..2974608) 1 NC_010645.1 MarR family transcriptional regulator 2974608 6266176 BAV2746 Bordetella avium 197N MarR family transcriptional regulator YP_787244.1 2974075 R 360910 CDS YP_787245.1 187479220 6267851 2975180..2975728 1 NC_010645.1 hypothetical protein 2975728 6267851 BAV2747 Bordetella avium 197N hypothetical protein YP_787245.1 2975180 D 360910 CDS YP_787246.1 187479221 6266178 complement(2975725..2976129) 1 NC_010645.1 membrane protein 2976129 6266178 BAV2748 Bordetella avium 197N membrane protein YP_787246.1 2975725 R 360910 CDS YP_787247.1 187479222 6266179 2976265..2977170 1 NC_010645.1 LysR family transcriptional regulator 2977170 6266179 BAV2749 Bordetella avium 197N LysR family transcriptional regulator YP_787247.1 2976265 D 360910 CDS YP_787248.1 187479223 6266180 2977181..2977762 1 NC_010645.1 NUDIX hydrolase 2977762 6266180 BAV2750 Bordetella avium 197N NUDIX hydrolase YP_787248.1 2977181 D 360910 CDS YP_787249.1 187479224 6266181 2977759..2978511 1 NC_010645.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2978511 aat 6266181 aat Bordetella avium 197N leucyl/phenylalanyl-tRNA--protein transferase YP_787249.1 2977759 D 360910 CDS YP_787250.1 187479225 6266572 2978548..2979270 1 NC_010645.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2979270 ate 6266572 ate Bordetella avium 197N arginyl-tRNA-protein transferase YP_787250.1 2978548 D 360910 CDS YP_787251.1 187479226 6266676 2979300..2980349 1 NC_010645.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2980349 pyrD 6266676 pyrD Bordetella avium 197N dihydroorotate dehydrogenase 2 YP_787251.1 2979300 D 360910 CDS YP_787252.1 187479227 6267611 complement(2980590..2981168) 1 NC_010645.1 granule-associated protein (phasin) 2981168 phaP 6267611 phaP Bordetella avium 197N granule-associated protein (phasin) YP_787252.1 2980590 R 360910 CDS YP_787253.1 187479228 6267517 2981518..2982495 1 NC_010645.1 hypothetical protein 2982495 6267517 BAV2755 Bordetella avium 197N hypothetical protein YP_787253.1 2981518 D 360910 CDS YP_787254.1 187479229 6266182 complement(2982840..2983658) 1 NC_010645.1 IclR family transcriptional regulator 2983658 6266182 BAV2756 Bordetella avium 197N IclR family transcriptional regulator YP_787254.1 2982840 R 360910 CDS YP_787255.1 187479230 6266183 complement(2983773..2984588) 1 NC_010645.1 hypothetical protein 2984588 6266183 BAV2757 Bordetella avium 197N hypothetical protein YP_787255.1 2983773 R 360910 CDS YP_787256.1 187479231 6266184 complement(2984585..2985382) 1 NC_010645.1 membrane protein 2985382 6266184 BAV2758 Bordetella avium 197N membrane protein YP_787256.1 2984585 R 360910 CDS YP_787257.1 187479232 6266185 2985444..2985821 1 NC_010645.1 thioredoxin 2985821 6266185 BAV2759 Bordetella avium 197N thioredoxin YP_787257.1 2985444 D 360910 CDS YP_787258.1 187479233 6266186 complement(2985829..2987262) 1 NC_010645.1 ATP-dependent RNA helicase 2987262 rhlE 6266186 rhlE Bordetella avium 197N ATP-dependent RNA helicase YP_787258.1 2985829 R 360910 CDS YP_787259.1 187479234 6267649 complement(2987415..2987744) 1 NC_010645.1 membrane protein 2987744 6267649 BAV2761 Bordetella avium 197N membrane protein YP_787259.1 2987415 R 360910 CDS YP_787260.1 187479235 6266187 complement(2987744..>2988490) 1 NC_010645.1 membrane protein >2988490 6266187 BAV2762 Bordetella avium 197N membrane protein YP_787260.1 2987744 R 360910 CDS YP_787261.1 187479236 6266188 2988782..2988976 1 NC_010645.1 hypothetical protein 2988976 6266188 BAV2763 Bordetella avium 197N hypothetical protein YP_787261.1 2988782 D 360910 CDS YP_787262.1 187479237 6266189 2988999..2989421 1 NC_010645.1 hypothetical protein 2989421 6266189 BAV2764 Bordetella avium 197N hypothetical protein YP_787262.1 2988999 D 360910 CDS YP_787263.1 187479238 6266190 2989551..2990648 1 NC_010645.1 hypothetical protein 2990648 6266190 BAV2765 Bordetella avium 197N hypothetical protein YP_787263.1 2989551 D 360910 CDS YP_787264.1 187479239 6266191 complement(2990662..2992173) 1 NC_010645.1 exported peptidase 2992173 6266191 BAV2766 Bordetella avium 197N exported peptidase YP_787264.1 2990662 R 360910 CDS YP_787265.1 187479240 6266192 2992249..2993088 1 NC_010645.1 UTP--glucose-1-phosphate uridylyltransferase 2993088 gtaB 6266192 gtaB Bordetella avium 197N UTP--glucose-1-phosphate uridylyltransferase YP_787265.1 2992249 D 360910 CDS YP_787266.1 187479241 6267135 complement(2993150..2995924) 1 NC_010645.1 Also similar to BAV3245 (27.7 38d).; magnesium transporting ATPase, P-type 1 2995924 mgtA 6267135 mgtA Bordetella avium 197N magnesium transporting ATPase, P-type 1 YP_787266.1 2993150 R 360910 CDS YP_787267.1 187479242 6267349 complement(2996155..2996487) 1 NC_010645.1 hypothetical protein 2996487 6267349 BAV2769 Bordetella avium 197N hypothetical protein YP_787267.1 2996155 R 360910 CDS YP_787268.1 187479243 6266193 2997136..2997711 1 NC_010645.1 TetR family transcriptional regulator 2997711 6266193 BAV2770 Bordetella avium 197N TetR family transcriptional regulator YP_787268.1 2997136 D 360910 CDS YP_787269.1 187479244 6266194 complement(2997702..2998739) 1 NC_010645.1 Ca2+/Na+ antiporter 2998739 6266194 BAV2771 Bordetella avium 197N Ca2+/Na+ antiporter YP_787269.1 2997702 R 360910 CDS YP_787270.1 187479245 6266195 2999004..3000347 1 NC_010645.1 Xaa-Pro aminopeptidase 3000347 pepP 6266195 pepP Bordetella avium 197N Xaa-Pro aminopeptidase YP_787270.1 2999004 D 360910 CDS YP_787271.1 187479246 6267502 3000385..3001518 1 NC_010645.1 Also similar to BAV3230 (29.3 38d); hypothetical protein 3001518 ubiH 6267502 ubiH Bordetella avium 197N hypothetical protein YP_787271.1 3000385 D 360910 CDS YP_787272.1 187479247 6267912 3001624..3002649 1 NC_010645.1 tRNA-dihydrouridine synthase B 3002649 dusB 6267912 dusB Bordetella avium 197N tRNA-dihydrouridine synthase B YP_787272.1 3001624 D 360910 CDS YP_787273.1 187479248 6266909 3002693..3002932 1 NC_010645.1 DNA-binding protein 3002932 fis 6266909 fis Bordetella avium 197N DNA-binding protein YP_787273.1 3002693 D 360910 CDS YP_787274.1 187479249 6266981 3002999..3004588 1 NC_010645.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3004588 purH 6266981 purH Bordetella avium 197N bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_787274.1 3002999 D 360910 CDS YP_787275.1 187479250 6267600 3004588..3005133 1 NC_010645.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 3005133 ruvC 6267600 ruvC Bordetella avium 197N Holliday junction resolvase YP_787275.1 3004588 D 360910 CDS YP_787276.1 187479251 6267740 3005217..3005789 1 NC_010645.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 3005789 ruvA 6267740 ruvA Bordetella avium 197N Holliday junction DNA helicase RuvA YP_787276.1 3005217 D 360910 CDS YP_787277.1 187479252 6267738 complement(3005793..>3006557) 1 NC_010645.1 lipoprotein >3006557 6267738 BAV2779 Bordetella avium 197N lipoprotein YP_787277.1 3005793 R 360910 CDS YP_787278.1 187479253 6266196 3006837..3007910 1 NC_010645.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 3007910 ruvB 6266196 ruvB Bordetella avium 197N Holliday junction DNA helicase RuvB YP_787278.1 3006837 D 360910 CDS YP_787279.1 187479254 6267739 complement(3007926..3009746) 1 NC_010645.1 ATP-dependent DNA helicase 3009746 recQ 6267739 recQ Bordetella avium 197N ATP-dependent DNA helicase YP_787279.1 3007926 R 360910 CDS YP_787280.1 187479255 6267631 complement(3009829..3011133) 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 3011133 6267631 BAV2782 Bordetella avium 197N hypothetical protein YP_787280.1 3009829 R 360910 CDS YP_787281.1 187479256 6266197 3011305..3012006 1 NC_010645.1 osmolarity two component response regulator 3012006 ompB 6266197 ompB Bordetella avium 197N osmolarity two component response regulator YP_787281.1 3011305 D 360910 CDS YP_787282.1 187479257 6267459 3012011..3013489 1 NC_010645.1 osmolarity two component sensor kinase 3013489 envZ 6267459 envZ Bordetella avium 197N osmolarity two component sensor kinase YP_787282.1 3012011 D 360910 CDS YP_787283.1 187479258 6266930 complement(3013501..3014547) 1 NC_010645.1 cytochrome oxidase D ubiquinol oxidase,subunit II 3014547 6266930 BAV2785 Bordetella avium 197N cytochrome oxidase D ubiquinol oxidase,subunit II YP_787283.1 3013501 R 360910 CDS YP_787284.1 187479259 6266198 complement(3014544..3015878) 1 NC_010645.1 cytochrome bd ubiquinol oxidase,subunit I 3015878 6266198 BAV2786 Bordetella avium 197N cytochrome bd ubiquinol oxidase,subunit I YP_787284.1 3014544 R 360910 CDS YP_787285.1 187479260 6266199 3015989..3017749 1 NC_010645.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 3017749 glnS 6266199 glnS Bordetella avium 197N glutaminyl-tRNA synthetase YP_787285.1 3015989 D 360910 CDS YP_787286.1 187479261 6267090 3017922..3018758 1 NC_010645.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 3018758 minC 6267090 minC Bordetella avium 197N septum formation inhibitor YP_787286.1 3017922 D 360910 CDS YP_787287.1 187479262 6267354 3018854..3019669 1 NC_010645.1 septum site-determining protein 3019669 minD 6267354 minD Bordetella avium 197N septum site-determining protein YP_787287.1 3018854 D 360910 CDS YP_787288.1 187479263 6267355 3019673..3019945 1 NC_010645.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 3019945 minE 6267355 minE Bordetella avium 197N cell division topological specificity factor MinE YP_787288.1 3019673 D 360910 CDS YP_787289.1 187479264 6267356 complement(3020009..3020230) 1 NC_010645.1 osmotically inducible lipoprotein 3020230 osmB 6267356 osmB Bordetella avium 197N osmotically inducible lipoprotein YP_787289.1 3020009 R 360910 CDS YP_787290.1 187479265 6267464 complement(3020419..3020946) 1 NC_010645.1 isochorismatase hydrolase 3020946 6267464 BAV2792 Bordetella avium 197N isochorismatase hydrolase YP_787290.1 3020419 R 360910 CDS YP_787291.1 187479266 6266200 complement(3020989..3022662) 1 NC_010645.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 3022662 6266200 BAV2793 Bordetella avium 197N putative ABC transporter ATP-binding protein YP_787291.1 3020989 R 360910 CDS YP_787292.1 187479267 6266201 complement(3022763..3023701) 1 NC_010645.1 catalyzes the formation of glutamate from glutamine; glutaminase 3023701 glsA 6266201 glsA Bordetella avium 197N glutaminase YP_787292.1 3022763 R 360910 CDS YP_787293.1 187479268 6267096 complement(3023747..3025222) 1 NC_010645.1 glutamate/gamma-aminobutyrate antiporter 3025222 6267096 BAV2795 Bordetella avium 197N glutamate/gamma-aminobutyrate antiporter YP_787293.1 3023747 R 360910 CDS YP_787294.1 187479269 6266202 3025619..3025972 1 NC_010645.1 Also similar to BAV2620 (59.184 38d); acid-resistance protein 3025972 hdeB 6266202 hdeB Bordetella avium 197N acid-resistance protein YP_787294.1 3025619 D 360910 CDS YP_787295.1 187479270 6267149 3026043..3027443 1 NC_010645.1 Also similar to BAV2621 (80.679 38d); glutamate decarboxylase alpha/beta 3027443 gadA2 6267149 gadA2 Bordetella avium 197N glutamate decarboxylase alpha/beta YP_787295.1 3026043 D 360910 CDS YP_787296.1 187479271 6267051 complement(3027455..3028342) 1 NC_010645.1 membrane protein 3028342 6267051 BAV2798 Bordetella avium 197N membrane protein YP_787296.1 3027455 R 360910 CDS YP_787297.1 187479272 6266203 3028470..3028958 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 3028958 6266203 BAV2799 Bordetella avium 197N hypothetical protein YP_787297.1 3028470 D 360910 CDS YP_787298.1 187479273 6266204 complement(3028967..3029962) 1 NC_010645.1 ABC transporter ATP-binding protein 3029962 6266204 BAV2800 Bordetella avium 197N ABC transporter ATP-binding protein YP_787298.1 3028967 R 360910 CDS YP_787299.1 187479274 6266205 complement(3029959..3030933) 1 NC_010645.1 ABC transporter ATP-binding protein 3030933 6266205 BAV2801 Bordetella avium 197N ABC transporter ATP-binding protein YP_787299.1 3029959 R 360910 CDS YP_787300.1 187479275 6266206 complement(3030941..3031855) 1 NC_010645.1 ABC transporter permease 3031855 6266206 BAV2802 Bordetella avium 197N ABC transporter permease YP_787300.1 3030941 R 360910 CDS YP_787301.1 187479276 6266207 complement(3031855..3032844) 1 NC_010645.1 ABC transporter permease 3032844 6266207 BAV2803 Bordetella avium 197N ABC transporter permease YP_787301.1 3031855 R 360910 CDS YP_787302.1 187479277 6266208 complement(3032911..3034482) 1 NC_010645.1 ABC transporter substrate-binding protein 3034482 6266208 BAV2804 Bordetella avium 197N ABC transporter substrate-binding protein YP_787302.1 3032911 R 360910 CDS YP_787303.1 187479278 6266209 complement(3034730..3035668) 1 NC_010645.1 glycosyl transferase 3035668 6266209 BAV2805 Bordetella avium 197N glycosyl transferase YP_787303.1 3034730 R 360910 CDS YP_787304.1 187479279 6266210 3035871..3036806 1 NC_010645.1 LysR family transcriptional regulator 3036806 6266210 BAV2806 Bordetella avium 197N LysR family transcriptional regulator YP_787304.1 3035871 D 360910 CDS YP_787305.1 187479280 6266211 complement(3036931..3037095) 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 3037095 6266211 BAV2807 Bordetella avium 197N hypothetical protein YP_787305.1 3036931 R 360910 CDS YP_787306.1 187479281 6266212 3037588..3043290 1 NC_010645.1 excinuclease ABC subunit 3043290 6266212 BAV2808 Bordetella avium 197N excinuclease ABC subunit YP_787306.1 3037588 D 360910 CDS YP_787307.1 187479282 6266213 3043296..3044441 1 NC_010645.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; aminodeoxychorismate synthase 3044441 pabB 6266213 pabB Bordetella avium 197N aminodeoxychorismate synthase YP_787307.1 3043296 D 360910 CDS YP_787308.1 187479283 6267480 3044449..3045081 1 NC_010645.1 hypothetical protein 3045081 6267480 BAV2810 Bordetella avium 197N hypothetical protein YP_787308.1 3044449 D 360910 CDS YP_787309.1 187479284 6266214 complement(3045091..3045900) 1 NC_010645.1 hypothetical protein 3045900 6266214 BAV2811 Bordetella avium 197N hypothetical protein YP_787309.1 3045091 R 360910 CDS YP_787310.1 187479285 6266215 complement(3045900..3047264) 1 NC_010645.1 multidrug efflux outer membrane lipoprotein 3047264 6266215 BAV2812 Bordetella avium 197N multidrug efflux outer membrane lipoprotein YP_787310.1 3045900 R 360910 CDS YP_787311.1 187479286 6266216 complement(3047261..>3049228) 1 NC_010645.1 macrolide-specific ABC-type efflux carrier >3049228 macB 6266216 macB Bordetella avium 197N macrolide-specific ABC-type efflux carrier YP_787311.1 3047261 R 360910 CDS YP_787312.1 187479287 6266217 complement(3050553..3051449) 1 NC_010645.1 LysR family transcriptional regulator 3051449 6266217 BAV2816 Bordetella avium 197N LysR family transcriptional regulator YP_787312.1 3050553 R 360910 CDS YP_787313.1 187479288 6266218 3051550..3053289 1 NC_010645.1 gamma-glutamyltranspeptidase 3053289 ggt 6266218 ggt Bordetella avium 197N gamma-glutamyltranspeptidase YP_787313.1 3051550 D 360910 CDS YP_787314.1 187479289 6267067 complement(3053302..3054966) 1 NC_010645.1 Higly similar to BAV2824, HagA (53.4 38d). Also similar to the bordetellae FhaC; hemolysin/hemagglutin accessory protein 3054966 hagA2 6267067 hagA2 Bordetella avium 197N hemolysin/hemagglutin accessory protein YP_787314.1 3053302 R 360910 CDS YP_787315.1 187479290 6267143 complement(3055039..3059094) 1 NC_010645.1 Nearly identical copy of BAV2825, HagB, (96 38d.); no mutants isolated.; similar to the N-terminal 1050 residues of the bordetellae FhaB; hemolysin/hemagglutin 3059094 hagB2 6267143 hagB2 Bordetella avium 197N hemolysin/hemagglutin YP_787315.1 3055039 R 360910 CDS YP_787316.1 187479291 6267145 complement(3059416..3060270) 1 NC_010645.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 3060270 purU 6267145 purU Bordetella avium 197N formyltetrahydrofolate deformylase YP_787316.1 3059416 R 360910 CDS YP_787317.1 187479292 6267605 complement(3060299..3061408) 1 NC_010645.1 oxidase 3061408 6267605 BAV2821 Bordetella avium 197N oxidase YP_787317.1 3060299 R 360910 CDS YP_787318.1 187479293 6266219 complement(3061413..3061916) 1 NC_010645.1 oxygenase 3061916 6266219 BAV2822 Bordetella avium 197N oxygenase YP_787318.1 3061413 R 360910 CDS YP_787319.1 187479294 6266220 complement(3061923..3062555) 1 NC_010645.1 pyridoxamine 5'-phosphate oxidase 3062555 pdxH 6266220 pdxH Bordetella avium 197N pyridoxamine 5'-phosphate oxidase YP_787319.1 3061923 R 360910 CDS YP_787320.1 187479295 6267496 complement(3062685..3064298) 1 NC_010645.1 Virulence locus as shown in labs of L. Temple and P. Orndorff; both hagA and hagB required for virulence and hemagglutination of guinea pig erythrocytes; Also highly similar to BAV2818, HagA2, (53.4 38d); hemolysin/hemagglutin accessory protein 3064298 hagA1 6267496 hagA1 Bordetella avium 197N hemolysin/hemagglutin accessory protein YP_787320.1 3062685 R 360910 CDS YP_787321.1 187479296 6267142 3064793..3068860 1 NC_010645.1 HagB is essential for virulence as shown in labs of L. Temple and P. Orndorff; both hagA and hagB required for virulence and hemagglutination of guinea pig erythrocytes; Nearly identical copy of 2819, HagB2, (96 38d.); similar to the N-terminal 1050 residues of the bordetellae FhaB; hemolysin/hemagglutin 3068860 hagB1 6267142 hagB1 Bordetella avium 197N hemolysin/hemagglutin YP_787321.1 3064793 D 360910 CDS YP_787322.1 187479297 6267144 complement(3068874..>3069524) 1 NC_010645.1 ; Also similar to BAV2865 (58.2 38d.); multidrug efflux-associated protein >3069524 6267144 BAV2826 Bordetella avium 197N multidrug efflux-associated protein YP_787322.1 3068874 R 360910 CDS YP_787323.1 187479298 6266221 complement(3069521..>3070735) 1 NC_010645.1 multidrug resistance protein >3070735 6266221 BAV2827 Bordetella avium 197N multidrug resistance protein YP_787323.1 3069521 R 360910 CDS YP_787324.1 187479299 6266222 complement(3071028..3071648) 1 NC_010645.1 hypothetical protein 3071648 6266222 BAV2828 Bordetella avium 197N hypothetical protein YP_787324.1 3071028 R 360910 CDS YP_787325.1 187479300 6266223 3071848..3072042 1 NC_010645.1 hypothetical protein 3072042 6266223 BAV2829 Bordetella avium 197N hypothetical protein YP_787325.1 3071848 D 360910 CDS YP_787326.1 187479301 6266224 complement(3072512..3073801) 1 NC_010645.1 Almost identical to BAV0639 (98.8 38d); O-acetylhomoserine sulfhydrylase 3073801 cysD2 6266224 cysD2 Bordetella avium 197N O-acetylhomoserine sulfhydrylase YP_787326.1 3072512 R 360910 CDS YP_787327.1 187479302 6266841 complement(3074168..3075064) 1 NC_010645.1 lipase/esterase 3075064 6266841 BAV2831 Bordetella avium 197N lipase/esterase YP_787327.1 3074168 R 360910 CDS YP_787328.1 187479303 6266225 3075581..3076735 1 NC_010645.1 ABC transporter substrate-binding protein 3076735 6266225 BAV2832 Bordetella avium 197N ABC transporter substrate-binding protein YP_787328.1 3075581 D 360910 CDS YP_787329.1 187479304 6266226 3076816..3077697 1 NC_010645.1 ABC transporter permease 3077697 6266226 BAV2833 Bordetella avium 197N ABC transporter permease YP_787329.1 3076816 D 360910 CDS YP_787330.1 187479305 6266227 <3077698..3078567 1 NC_010645.1 ABC transporter permease 3078567 6266227 BAV2834 Bordetella avium 197N ABC transporter permease YP_787330.1 <3077698 D 360910 CDS YP_787331.1 187479306 6266228 3078560..3079348 1 NC_010645.1 ABC transporter ATP-binding protein 3079348 6266228 BAV2835 Bordetella avium 197N ABC transporter ATP-binding protein YP_787331.1 3078560 D 360910 CDS YP_787332.1 187479307 6266229 3079345..3080055 1 NC_010645.1 ABC transporter ATP-binding protein 3080055 6266229 BAV2836 Bordetella avium 197N ABC transporter ATP-binding protein YP_787332.1 3079345 D 360910 CDS YP_787333.1 187479308 6266230 complement(3080229..3082139) 1 NC_010645.1 membrane-associated sulfatase 3082139 6266230 BAV2837 Bordetella avium 197N membrane-associated sulfatase YP_787333.1 3080229 R 360910 CDS YP_787334.1 187479309 6266231 complement(3082317..3083288) 1 NC_010645.1 membrane protein 3083288 6266231 BAV2838 Bordetella avium 197N membrane protein YP_787334.1 3082317 R 360910 CDS YP_787335.1 187479310 6266232 complement(3083383..3084384) 1 NC_010645.1 Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export; poly(beta-D-mannuronate) lyase 3084384 algL 6266232 algL Bordetella avium 197N poly(beta-D-mannuronate) lyase YP_787335.1 3083383 R 360910 CDS YP_787336.1 187479311 6266233 3084549..3085685 1 NC_010645.1 lipoprotein 3085685 6266233 BAV2840 Bordetella avium 197N lipoprotein YP_787336.1 3084549 D 360910 CDS YP_787337.1 187479312 6266234 complement(3085803..>3086486) 1 NC_010645.1 membrane protein >3086486 6266234 BAV2841 Bordetella avium 197N membrane protein YP_787337.1 3085803 R 360910 CDS YP_787338.1 187479313 6266235 complement(3086547..3086825) 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 3086825 6266235 BAV2842 Bordetella avium 197N hypothetical protein YP_787338.1 3086547 R 360910 CDS YP_787339.1 187479314 6266236 complement(3087104..3088090) 1 NC_010645.1 hypothetical protein 3088090 6266236 BAV2843 Bordetella avium 197N hypothetical protein YP_787339.1 3087104 R 360910 CDS YP_787340.1 187479315 6266237 complement(3088153..3088971) 1 NC_010645.1 class II aldolase class 3088971 6266237 BAV2844 Bordetella avium 197N class II aldolase class YP_787340.1 3088153 R 360910 CDS YP_787341.1 187479316 6266238 3089074..3089997 1 NC_010645.1 LysR family transcriptional regulator 3089997 6266238 BAV2845 Bordetella avium 197N LysR family transcriptional regulator YP_787341.1 3089074 D 360910 CDS YP_787342.1 187479317 6266239 3090157..3092964 1 NC_010645.1 Shown to be expressed in lab of L. Temple; autotransporter 3092964 6266239 BAV2846 Bordetella avium 197N autotransporter YP_787342.1 3090157 D 360910 CDS YP_787343.1 187479318 6267870 complement(3093303..3095366) 1 NC_010645.1 hypothetical protein 3095366 6267870 BAV2847 Bordetella avium 197N hypothetical protein YP_787343.1 3093303 R 360910 CDS YP_787344.1 187479319 6266241 complement(3095497..3096099) 1 NC_010645.1 DNA-3-methyladenine glycosylase 3096099 tag 6266241 tag Bordetella avium 197N DNA-3-methyladenine glycosylase YP_787344.1 3095497 R 360910 CDS YP_787345.1 187479320 6267785 3096213..3096683 1 NC_010645.1 hypothetical protein 3096683 6267785 BAV2849 Bordetella avium 197N hypothetical protein YP_787345.1 3096213 D 360910 CDS YP_787346.1 187479321 6266242 complement(3096825..3097394) 1 NC_010645.1 iron transport sensor protein 3097394 6266242 BAV2850 Bordetella avium 197N iron transport sensor protein YP_787346.1 3096825 R 360910 CDS YP_787347.1 187479322 6266243 3097600..3098448 1 NC_010645.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 3098448 kdsA 6266243 kdsA Bordetella avium 197N 2-dehydro-3-deoxyphosphooctonate aldolase YP_787347.1 3097600 D 360910 CDS YP_787348.1 187479323 6267871 complement(3098822..3099619) 1 NC_010645.1 Also similar to BAV3166 (55.8 38d.); D-methionine ABC transporter substrate-binding protein 3099619 metQ 6267871 metQ Bordetella avium 197N D-methionine ABC transporter substrate-binding protein YP_787348.1 3098822 R 360910 CDS YP_787349.1 187479324 6267343 complement(3099663..3100262) 1 NC_010645.1 D-methionine ABC transporter permease 3100262 metI 6267343 metI Bordetella avium 197N D-methionine ABC transporter permease YP_787349.1 3099663 R 360910 CDS YP_787350.1 187479325 6267340 complement(3100273..3101361) 1 NC_010645.1 D-methionine ABC transporter ATP-binding protein 3101361 metN 6267340 metN Bordetella avium 197N D-methionine ABC transporter ATP-binding protein YP_787350.1 3100273 R 360910 CDS YP_787351.1 187479326 6267342 complement(3101561..>3103786) 1 NC_010645.1 glycoside hydrolase >3103786 6267342 BAV2855 Bordetella avium 197N glycoside hydrolase YP_787351.1 3101561 R 360910 CDS YP_787352.1 187479327 6266244 complement(3104034..3105878) 1 NC_010645.1 hypothetical protein 3105878 6266244 BAV2856 Bordetella avium 197N hypothetical protein YP_787352.1 3104034 R 360910 CDS YP_787353.1 187479328 6266245 3105993..3106865 1 NC_010645.1 Also similar to BAV2550 (27.413 38d 0d.) and BAV2568 (38.519 38d.).; inositol-1-monophosphatase 3 3106865 suhB3 6266245 suhB3 Bordetella avium 197N inositol-1-monophosphatase 3 YP_787353.1 3105993 D 360910 CDS YP_787354.1 187479329 6267782 complement(3106871..3108556) 1 NC_010645.1 long-chain-fatty-acid--CoA ligase 3108556 fadD 6267782 fadD Bordetella avium 197N long-chain-fatty-acid--CoA ligase YP_787354.1 3106871 R 360910 CDS YP_787355.1 187479330 6266950 3108635..3109828 1 NC_010645.1 Also similar to several including BAV3418 (55.4 id.) and BAV2890 (50.7 38d); amidohydrolase/peptidase 3109828 6266950 BAV2859 Bordetella avium 197N amidohydrolase/peptidase YP_787355.1 3108635 D 360910 CDS YP_787356.1 187479331 6266246 complement(3109830..>3110711) 1 NC_010645.1 LysR family transcriptional regulator >3110711 6266246 BAV2860 Bordetella avium 197N LysR family transcriptional regulator YP_787356.1 3109830 R 360910 CDS YP_787357.1 187479332 6266247 3110817..3111854 1 NC_010645.1 membrane protein 3111854 6266247 BAV2861 Bordetella avium 197N membrane protein YP_787357.1 3110817 D 360910 CDS YP_787358.1 187479333 6266248 3111935..3112339 1 NC_010645.1 acyl-CoA thioesterase 3112339 6266248 BAV2862 Bordetella avium 197N acyl-CoA thioesterase YP_787358.1 3111935 D 360910 CDS YP_787359.1 187479334 6266249 3112352..3113824 1 NC_010645.1 magnesium transporter 3113824 6266249 BAV2863 Bordetella avium 197N magnesium transporter YP_787359.1 3112352 D 360910 CDS YP_787360.1 187479335 6266250 <3114132..3114689 1 NC_010645.1 catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 3114689 pagP 6266250 pagP Bordetella avium 197N palmitoyl transferase YP_787360.1 <3114132 D 360910 CDS YP_787361.1 187479336 6267481 complement(3114699..3115295) 1 NC_010645.1 Also similar to BAV2826 (58.2 38d.); cation transport-associated protein 3115295 6267481 BAV2865 Bordetella avium 197N cation transport-associated protein YP_787361.1 3114699 R 360910 CDS YP_787362.1 187479337 6266251 complement(3115457..>3115915) 1 NC_010645.1 AsnC/Lrp family transcriptional regulator >3115915 grp 6266251 grp Bordetella avium 197N AsnC/Lrp family transcriptional regulator YP_787362.1 3115457 R 360910 CDS YP_787363.1 187479338 6267117 3116136..3116660 1 NC_010645.1 hypothetical protein 3116660 6267117 BAV2867 Bordetella avium 197N hypothetical protein YP_787363.1 3116136 D 360910 CDS YP_787364.1 187479339 6266252 complement(3116852..3117559) 1 NC_010645.1 hypothetical protein 3117559 6266252 BAV2868 Bordetella avium 197N hypothetical protein YP_787364.1 3116852 R 360910 CDS YP_787365.1 187479340 6266253 complement(3117562..3120294) 1 NC_010645.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 3120294 secA2 6266253 secA2 Bordetella avium 197N preprotein translocase subunit SecA YP_787365.1 3117562 R 360910 CDS YP_787366.1 187479341 6267746 complement(3120440..3121423) 1 NC_010645.1 exported peptidase 3121423 6267746 BAV2870 Bordetella avium 197N exported peptidase YP_787366.1 3120440 R 360910 CDS YP_787367.1 187479342 6266254 3121550..3121960 1 NC_010645.1 hypothetical protein 3121960 6266254 BAV2871 Bordetella avium 197N hypothetical protein YP_787367.1 3121550 D 360910 CDS YP_787368.1 187479343 6266255 complement(3121972..3122208) 1 NC_010645.1 lipoprotein 3122208 6266255 BAV2872 Bordetella avium 197N lipoprotein YP_787368.1 3121972 R 360910 CDS YP_787369.1 187479344 6266256 complement(3122286..3123209) 1 NC_010645.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3123209 lpxC 6266256 lpxC Bordetella avium 197N UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_787369.1 3122286 R 360910 CDS YP_787370.1 187479345 6266669 complement(3123458..3124642) 1 NC_010645.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 3124642 ftsZ 6266669 ftsZ Bordetella avium 197N cell division protein FtsZ YP_787370.1 3123458 R 360910 CDS YP_787371.1 187479346 6267044 complement(3124825..3126051) 1 NC_010645.1 cell division protein 3126051 divA 6267044 divA Bordetella avium 197N cell division protein YP_787371.1 3124825 R 360910 CDS YP_787372.1 187479347 6266881 complement(3126056..>3126880) 1 NC_010645.1 cell division protein >3126880 ftsQ 6266881 ftsQ Bordetella avium 197N cell division protein YP_787372.1 3126056 R 360910 CDS YP_787373.1 187479348 6267040 complement(3126889..3127842) 1 NC_010645.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 3127842 ddl 6267040 ddl Bordetella avium 197N D-alanine--D-alanine ligase YP_787373.1 3126889 R 360910 CDS YP_787374.1 187479349 6266871 complement(3127839..3129245) 1 NC_010645.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 3129245 murC 6266871 murC Bordetella avium 197N UDP-N-acetylmuramate--L-alanine ligase YP_787374.1 3127839 R 360910 CDS YP_787375.1 187479350 6267401 complement(3129242..3130315) 1 NC_010645.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 3130315 murG 6267401 murG Bordetella avium 197N undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_787375.1 3129242 R 360910 CDS YP_787376.1 187479351 6267404 complement(3130312..3131505) 1 NC_010645.1 cell division protein 3131505 ftsW 6267404 ftsW Bordetella avium 197N cell division protein YP_787376.1 3130312 R 360910 CDS YP_787377.1 187479352 6267041 complement(3131502..3133028) 1 NC_010645.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 3133028 murD 6267041 murD Bordetella avium 197N UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_787377.1 3131502 R 360910 CDS YP_787378.1 187479353 6267402 complement(3133025..>3134158) 1 NC_010645.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase >3134158 mraY 6267402 mraY Bordetella avium 197N phospho-N-acetylmuramoyl-pentapeptide- transferase YP_787378.1 3133025 R 360910 CDS YP_787379.1 187479354 6267382 complement(3134184..3137003) 1 NC_010645.1 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase 3137003 murE 6267382 murE Bordetella avium 197N putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase YP_787379.1 3134184 R 360910 CDS YP_787380.1 187479355 6267403 complement(3137000..3138733) 1 NC_010645.1 penicillin-binding protein 3138733 ftsI 6267403 ftsI Bordetella avium 197N penicillin-binding protein YP_787380.1 3137000 R 360910 CDS YP_787381.1 187479356 6267036 complement(3138730..3139005) 1 NC_010645.1 cell division protein 3139005 ftsL 6267036 ftsL Bordetella avium 197N cell division protein YP_787381.1 3138730 R 360910 CDS YP_787382.1 187479357 6267039 complement(3139005..3140072) 1 NC_010645.1 S-adenosyl-methyltransferase MraW 3140072 mraW 6267039 mraW Bordetella avium 197N S-adenosyl-methyltransferase MraW YP_787382.1 3139005 R 360910 CDS YP_787383.1 187479358 6267381 complement(3140081..>3140509) 1 NC_010645.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ >3140509 mraZ 6267381 mraZ Bordetella avium 197N cell division protein MraZ YP_787383.1 3140081 R 360910 CDS YP_787384.1 187479359 6267959 3141285..3143078 1 NC_010645.1 ABC transporter ATP-binding protein 3143078 uup 6267959 uup Bordetella avium 197N ABC transporter ATP-binding protein YP_787384.1 3141285 D 360910 CDS YP_787385.1 187479360 6267921 complement(3143139..3144200) 1 NC_010645.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 3144200 pyrC 6267921 pyrC Bordetella avium 197N dihydroorotase YP_787385.1 3143139 R 360910 CDS YP_787386.1 187479361 6267609 complement(3144213..3145406) 1 NC_010645.1 amidohydrolase/peptidase 3145406 6267609 BAV2890 Bordetella avium 197N amidohydrolase/peptidase YP_787386.1 3144213 R 360910 CDS YP_787387.1 187479362 6266257 3145555..3145833 1 NC_010645.1 hypothetical protein 3145833 6266257 BAV2891 Bordetella avium 197N hypothetical protein YP_787387.1 3145555 D 360910 CDS YP_787388.1 187479363 6266258 complement(3146038..>3146412) 1 NC_010645.1 membrane protein >3146412 6266258 BAV2892 Bordetella avium 197N membrane protein YP_787388.1 3146038 R 360910 CDS YP_787389.1 187479364 6267961 complement(3153014..3153490) 1 NC_010645.1 leucine-responsive regulatory protein 3153490 alsB 6267961 alsB Bordetella avium 197N leucine-responsive regulatory protein YP_787389.1 3153014 R 360910 CDS YP_787390.1 187479365 6266616 3153635..3154747 1 NC_010645.1 4-hydroxyphenylpyruvate dioxygenase 3154747 bllY 6266616 bllY Bordetella avium 197N 4-hydroxyphenylpyruvate dioxygenase YP_787390.1 3153635 D 360910 CDS YP_787391.1 187479366 6266721 complement(3154805..3155362) 1 NC_010645.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 3155362 msrA 6266721 msrA Bordetella avium 197N methionine sulfoxide reductase A YP_787391.1 3154805 R 360910 CDS YP_787392.1 187479367 6267392 complement(3155384..3155713) 1 NC_010645.1 cytochrome C 3155713 6267392 BAV2896 Bordetella avium 197N cytochrome C YP_787392.1 3155384 R 360910 CDS YP_787393.1 187479368 6266260 3155883..3156677 1 NC_010645.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3156677 lgt 6266260 lgt Bordetella avium 197N prolipoprotein diacylglyceryl transferase YP_787393.1 3155883 D 360910 CDS YP_787394.1 187479369 6267294 complement(3156646..3157389) 1 NC_010645.1 hypothetical protein 3157389 6267294 BAV2898 Bordetella avium 197N hypothetical protein YP_787394.1 3156646 R 360910 CDS YP_787395.1 187479370 6266261 complement(3157728..3158039) 1 NC_010645.1 hypothetical protein 3158039 6266261 BAV2899 Bordetella avium 197N hypothetical protein YP_787395.1 3157728 R 360910 CDS YP_787396.1 187479371 6266262 complement(3158039..>3158563) 1 NC_010645.1 ; . Seems to be unique to the bordetellae.; hypothetical protein >3158563 6266262 BAV2900 Bordetella avium 197N hypothetical protein YP_787396.1 3158039 R 360910 CDS YP_787397.1 187479372 6266263 3158961..3159416 1 NC_010645.1 membrane protein 3159416 6266263 BAV2901 Bordetella avium 197N membrane protein YP_787397.1 3158961 D 360910 CDS YP_787398.1 187479373 6266265 3161237..3162142 1 NC_010645.1 Also similar to BAV1760 (35.2 38d); 2-hydroxy-3-oxopropionate reductase 3162142 glxR 6266265 glxR Bordetella avium 197N 2-hydroxy-3-oxopropionate reductase YP_787398.1 3161237 D 360910 CDS YP_787399.1 187479374 6267100 complement(3162171..3162782) 1 NC_010645.1 acyl carrier protein phosphodiesterase 3162782 acpD 6267100 acpD Bordetella avium 197N acyl carrier protein phosphodiesterase YP_787399.1 3162171 R 360910 CDS YP_787400.1 187479375 6266588 3162895..3163824 1 NC_010645.1 LysR family transcriptional regulator 3163824 6266588 BAV2905 Bordetella avium 197N LysR family transcriptional regulator YP_787400.1 3162895 D 360910 CDS YP_787401.1 187479376 6266266 3163925..3164638 1 NC_010645.1 hypothetical protein 3164638 6266266 BAV2906 Bordetella avium 197N hypothetical protein YP_787401.1 3163925 D 360910 CDS YP_787402.1 187479377 6266267 complement(3164873..3166369) 1 NC_010645.1 two-component sensor kinase 3166369 6266267 BAV2907 Bordetella avium 197N two-component sensor kinase YP_787402.1 3164873 R 360910 CDS YP_787403.1 187479378 6266268 complement(3166386..3167039) 1 NC_010645.1 two-component response regulator 3167039 6266268 BAV2908 Bordetella avium 197N two-component response regulator YP_787403.1 3166386 R 360910 CDS YP_787404.1 187479379 6266269 complement(3167053..3167622) 1 NC_010645.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 3167622 nudH 6266269 nudH Bordetella avium 197N dinucleoside polyphosphate hydrolase YP_787404.1 3167053 R 360910 CDS YP_787405.1 187479380 6267432 3167688..3169418 1 NC_010645.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3169418 drpA 6267432 drpA Bordetella avium 197N prolyl-tRNA synthetase YP_787405.1 3167688 D 360910 CDS YP_787406.1 187479381 6266902 <3169472..3169894 1 NC_010645.1 thioesterase 3169894 6266902 BAV2911 Bordetella avium 197N thioesterase YP_787406.1 <3169472 D 360910 CDS YP_787407.1 187479382 6266270 3169897..3170571 1 NC_010645.1 TolQ protein 3170571 tolQ 6266270 tolQ Bordetella avium 197N TolQ protein YP_787407.1 3169897 D 360910 CDS YP_787408.1 187479383 6267818 3170571..3171026 1 NC_010645.1 TolR protein 3171026 tolR 6267818 tolR Bordetella avium 197N TolR protein YP_787408.1 3170571 D 360910 CDS YP_787409.1 187479384 6267819 3171034..3172167 1 NC_010645.1 TolA protein 3172167 tolA 6267819 tolA Bordetella avium 197N TolA protein YP_787409.1 3171034 D 360910 CDS YP_787410.1 187479385 6267815 3172175..3173500 1 NC_010645.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 3173500 tolB 6267815 tolB Bordetella avium 197N translocation protein TolB YP_787410.1 3172175 D 360910 CDS YP_787411.1 187479386 6267816 3173532..3174029 1 NC_010645.1 peptidoglycan-associated lipoprotein 3174029 excC 6267816 excC Bordetella avium 197N peptidoglycan-associated lipoprotein YP_787411.1 3173532 D 360910 CDS YP_787412.1 187479387 6266942 3174112..3174798 1 NC_010645.1 hypothetical protein 3174798 6266942 BAV2917 Bordetella avium 197N hypothetical protein YP_787412.1 3174112 D 360910 CDS YP_787413.1 187479388 6266271 3174897..3175694 1 NC_010645.1 hydrolase 3175694 6266271 BAV2918 Bordetella avium 197N hydrolase YP_787413.1 3174897 D 360910 CDS YP_787414.1 187479389 6266272 complement(3175734..3177851) 1 NC_010645.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3177851 far 6266272 far Bordetella avium 197N elongation factor G YP_787414.1 3175734 R 360910 CDS YP_787415.1 187479390 6266953 complement(3178244..3178705) 1 NC_010645.1 universal stress protein 3178705 6266953 BAV2920 Bordetella avium 197N universal stress protein YP_787415.1 3178244 R 360910 CDS YP_787416.1 187479391 6266273 complement(3178793..3179137) 1 NC_010645.1 hypothetical protein 3179137 6266273 BAV2921 Bordetella avium 197N hypothetical protein YP_787416.1 3178793 R 360910 CDS YP_787417.1 187479392 6266274 complement(3179219..>3180628) 1 NC_010645.1 GntR family transcriptional regulator >3180628 6266274 BAV2922 Bordetella avium 197N GntR family transcriptional regulator YP_787417.1 3179219 R 360910 CDS YP_787418.1 187479393 6266275 <3180753..3181682 1 NC_010645.1 membrane protein 3181682 6266275 BAV2923 Bordetella avium 197N membrane protein YP_787418.1 <3180753 D 360910 CDS YP_787419.1 187479394 6266276 3181704..3182336 1 NC_010645.1 amino acid efflux protein 3182336 6266276 BAV2924 Bordetella avium 197N amino acid efflux protein YP_787419.1 3181704 D 360910 CDS YP_787420.1 187479395 6266277 complement(3182356..3183192) 1 NC_010645.1 hypothetical protein 3183192 6266277 BAV2925 Bordetella avium 197N hypothetical protein YP_787420.1 3182356 R 360910 CDS YP_787421.1 187479396 6266278 3183272..3183679 1 NC_010645.1 bactoprenol-linked glucose translocase 3183679 gtrA 6266278 gtrA Bordetella avium 197N bactoprenol-linked glucose translocase YP_787421.1 3183272 D 360910 CDS YP_787422.1 187479397 6267136 complement(3183615..3185201) 1 NC_010645.1 4-amino-4-deoxy-l-arabinose lipid A transferase 3185201 arnT 6267136 arnT Bordetella avium 197N 4-amino-4-deoxy-l-arabinose lipid A transferase YP_787422.1 3183615 R 360910 CDS YP_787423.1 187479398 6266653 complement(3185198..3186256) 1 NC_010645.1 bactoprenol glucosyl transferase 3186256 gtrB 6266653 gtrB Bordetella avium 197N bactoprenol glucosyl transferase YP_787423.1 3185198 R 360910 CDS YP_787424.1 187479399 6267137 3186410..3186934 1 NC_010645.1 acetyltransferase 3186934 6267137 BAV2929 Bordetella avium 197N acetyltransferase YP_787424.1 3186410 D 360910 CDS YP_787425.1 187479400 6266279 complement(3186931..3187107) 1 NC_010645.1 membrane protein 3187107 6266279 BAV2930 Bordetella avium 197N membrane protein YP_787425.1 3186931 R 360910 CDS YP_787426.1 187479401 6267889 complement(3187721..3188452) 1 NC_010645.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 3188452 dnaQ 6267889 dnaQ Bordetella avium 197N DNA polymerase III subunit epsilon YP_787426.1 3187721 R 360910 CDS YP_787427.1 187479402 6266896 complement(3188472..>3191537) 1 NC_010645.1 multidrug efflux system transmembrane protein >3191537 6266896 BAV2932 Bordetella avium 197N multidrug efflux system transmembrane protein YP_787427.1 3188472 R 360910 CDS YP_787428.1 187479403 6266281 complement(3191552..3192619) 1 NC_010645.1 multidrug efflux system inner membrane protein 3192619 6266281 BAV2933 Bordetella avium 197N multidrug efflux system inner membrane protein YP_787428.1 3191552 R 360910 CDS YP_787429.1 187479404 6266282 complement(3192760..3193221) 1 NC_010645.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 3193221 rnhA 6266282 rnhA Bordetella avium 197N ribonuclease H YP_787429.1 3192760 R 360910 CDS YP_787430.1 187479405 6266861 complement(3193282..>3194040) 1 NC_010645.1 hypothetical protein >3194040 6266861 BAV2935 Bordetella avium 197N hypothetical protein YP_787430.1 3193282 R 360910 CDS YP_787431.1 187479406 6266283 3194058..3194867 1 NC_010645.1 hydroxyacylglutathione hydrolase 3194867 gloB 6266283 gloB Bordetella avium 197N hydroxyacylglutathione hydrolase YP_787431.1 3194058 D 360910 CDS YP_787432.1 187479407 6267092 3194875..3196275 1 NC_010645.1 membrane-bound lytic murein transglycosylase D 3196275 mltD 6267092 mltD Bordetella avium 197N membrane-bound lytic murein transglycosylase D YP_787432.1 3194875 D 360910 CDS YP_787433.1 187479408 6267360 3196331..3197116 1 NC_010645.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 3197116 envM 6267360 envM Bordetella avium 197N enoyl-(acyl carrier protein) reductase YP_787433.1 3196331 D 360910 CDS YP_787434.1 187479409 6266929 3197158..3197949 1 NC_010645.1 hypothetical protein 3197949 6266929 BAV2939 Bordetella avium 197N hypothetical protein YP_787434.1 3197158 D 360910 CDS YP_787435.1 187479410 6266284 complement(3197946..3198911) 1 NC_010645.1 hypothetical protein 3198911 6266284 BAV2940 Bordetella avium 197N hypothetical protein YP_787435.1 3197946 R 360910 CDS YP_787436.1 187479411 6266285 complement(3198986..3199876) 1 NC_010645.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 3199876 nadC 6266285 nadC Bordetella avium 197N nicotinate-nucleotide pyrophosphorylase YP_787436.1 3198986 R 360910 CDS YP_787437.1 187479412 6267409 complement(3199975..3200868) 1 NC_010645.1 hypothetical protein 3200868 6267409 BAV2942 Bordetella avium 197N hypothetical protein YP_787437.1 3199975 R 360910 CDS YP_787438.1 187479413 6266286 complement(3200976..3201782) 1 NC_010645.1 two-component response regulator 3201782 6266286 BAV2943 Bordetella avium 197N two-component response regulator YP_787438.1 3200976 R 360910 CDS YP_787439.1 187479414 6266287 3201955..3202065 1 NC_010645.1 hypothetical protein 3202065 6266287 BAV2944 Bordetella avium 197N hypothetical protein YP_787439.1 3201955 D 360910 CDS YP_787440.1 187479415 6266288 <3202098..3202433 1 NC_010645.1 transcriptional regulator 3202433 6266288 BAV2945 Bordetella avium 197N transcriptional regulator YP_787440.1 <3202098 D 360910 CDS YP_787441.1 187479416 6266289 complement(3202409..3202741) 1 NC_010645.1 hypothetical protein 3202741 6266289 BAV2946 Bordetella avium 197N hypothetical protein YP_787441.1 3202409 R 360910 CDS YP_787442.1 187479417 6266290 <3203014..3203787 1 NC_010645.1 NADH pyrophosphatase 3203787 nudC 6266290 nudC Bordetella avium 197N NADH pyrophosphatase YP_787442.1 <3203014 D 360910 CDS YP_787443.1 187479418 6267430 complement(3203789..3204484) 1 NC_010645.1 hypothetical protein 3204484 6267430 BAV2948 Bordetella avium 197N hypothetical protein YP_787443.1 3203789 R 360910 CDS YP_787444.1 187479419 6266291 3204557..3204922 1 NC_010645.1 hypothetical protein 3204922 6266291 BAV2949 Bordetella avium 197N hypothetical protein YP_787444.1 3204557 D 360910 CDS YP_787445.1 187479420 6266292 3204975..3205934 1 NC_010645.1 hypothetical protein 3205934 6266292 BAV2950 Bordetella avium 197N hypothetical protein YP_787445.1 3204975 D 360910 CDS YP_787446.1 187479421 6266293 complement(3206191..>3207033) 1 NC_010645.1 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase >3207033 hpaI 6266293 hpaI Bordetella avium 197N 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_787446.1 3206191 R 360910 CDS YP_787447.1 187479422 6267203 3207256..3208119 1 NC_010645.1 hypothetical protein 3208119 6267203 BAV2952 Bordetella avium 197N hypothetical protein YP_787447.1 3207256 D 360910 CDS YP_787448.1 187479423 6267882 complement(3208558..3210078) 1 NC_010645.1 SpoVR family protein 3210078 6267882 BAV2953 Bordetella avium 197N SpoVR family protein YP_787448.1 3208558 R 360910 CDS YP_787449.1 187479424 6266295 complement(3210075..3211334) 1 NC_010645.1 hypothetical protein 3211334 6266295 BAV2954 Bordetella avium 197N hypothetical protein YP_787449.1 3210075 R 360910 CDS YP_787450.1 187479425 6266296 complement(3211348..>3213273) 1 NC_010645.1 serine protein kinase >3213273 6266296 BAV2955 Bordetella avium 197N serine protein kinase YP_787450.1 3211348 R 360910 CDS YP_787451.1 187479426 6266297 complement(3213619..3214230) 1 NC_010645.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 3214230 ribE 6266297 ribE Bordetella avium 197N riboflavin synthase subunit alpha YP_787451.1 3213619 R 360910 CDS YP_787452.1 187479427 6267653 complement(3214241..3215356) 1 NC_010645.1 riboflavin biosynthesis protein [includes diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase 3215356 ribD 6267653 ribD Bordetella avium 197N riboflavin biosynthesis protein [includes diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_787452.1 3214241 R 360910 CDS YP_787453.1 187479428 6267652 3215558..3216112 1 NC_010645.1 isochorismatase family hydrolase 3216112 6267652 BAV2958 Bordetella avium 197N isochorismatase family hydrolase YP_787453.1 3215558 D 360910 CDS YP_787454.1 187479429 6266298 3216112..3217074 1 NC_010645.1 transcriptional regulator 3217074 6266298 BAV2959 Bordetella avium 197N transcriptional regulator YP_787454.1 3216112 D 360910 CDS YP_787455.1 187479430 6266299 complement(3217078..3217560) 1 NC_010645.1 transcriptional regulator NrdR 3217560 nrdR 6266299 nrdR Bordetella avium 197N transcriptional regulator NrdR YP_787455.1 3217078 R 360910 CDS YP_787456.1 187479431 6267657 complement(3217707..3218957) 1 NC_010645.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3218957 glyA 6267657 glyA Bordetella avium 197N serine hydroxymethyltransferase YP_787456.1 3217707 R 360910 CDS YP_787457.1 187479432 6267101 complement(3219157..3219813) 1 NC_010645.1 hypothetical protein 3219813 6267101 BAV2962 Bordetella avium 197N hypothetical protein YP_787457.1 3219157 R 360910 CDS YP_787458.1 187479433 6266300 complement(3219857..3221086) 1 NC_010645.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 3221086 tyrS 6266300 tyrS Bordetella avium 197N tyrosyl-tRNA synthetase YP_787458.1 3219857 R 360910 CDS YP_787459.1 187479434 6267909 3221363..3222778 1 NC_010645.1 peptidase 3222778 6267909 BAV2964 Bordetella avium 197N peptidase YP_787459.1 3221363 D 360910 CDS YP_787460.1 187479435 6266301 3222780..3223898 1 NC_010645.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 3223898 anmK 6266301 anmK Bordetella avium 197N anhydro-N-acetylmuramic acid kinase YP_787460.1 3222780 D 360910 CDS YP_787461.1 187479436 6266302 complement(3223953..3224324) 1 NC_010645.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 3224324 6266302 BAV2966 Bordetella avium 197N iron-sulfur cluster insertion protein ErpA YP_787461.1 3223953 R 360910 CDS YP_787462.1 187479437 6266303 complement(3224412..3225212) 1 NC_010645.1 hypothetical protein 3225212 6266303 BAV2967 Bordetella avium 197N hypothetical protein YP_787462.1 3224412 R 360910 CDS YP_787463.1 187479438 6266304 complement(3225241..3226302) 1 NC_010645.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 3226302 argC 6266304 argC Bordetella avium 197N N-acetyl-gamma-glutamyl-phosphate reductase YP_787463.1 3225241 R 360910 CDS YP_787464.1 187479439 6266644 complement(3226444..3226836) 1 NC_010645.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3226836 rpsI 6266644 rpsI Bordetella avium 197N 30S ribosomal protein S9 YP_787464.1 3226444 R 360910 CDS YP_787465.1 187479440 6267717 complement(3226846..3227274) 1 NC_010645.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3227274 rplM 6267717 rplM Bordetella avium 197N 50S ribosomal protein L13 YP_787465.1 3226846 R 360910 CDS YP_787466.1 187479441 6267683 complement(3227521..3228600) 1 NC_010645.1 exported solute binding protein 3228600 6267683 BAV2971 Bordetella avium 197N exported solute binding protein YP_787466.1 3227521 R 360910 CDS YP_787467.1 187479442 6266305 complement(3228691..3229929) 1 NC_010645.1 hypothetical protein 3229929 6266305 BAV2972 Bordetella avium 197N hypothetical protein YP_787467.1 3228691 R 360910 CDS YP_787468.1 187479443 6266306 complement(3230236..3231600) 1 NC_010645.1 protease 3231600 pmbA 6266306 pmbA Bordetella avium 197N protease YP_787468.1 3230236 R 360910 CDS YP_787469.1 187479444 6267545 3231659..3232213 1 NC_010645.1 hypothetical protein 3232213 6267545 BAV2974 Bordetella avium 197N hypothetical protein YP_787469.1 3231659 D 360910 CDS YP_787470.1 187479445 6266307 3232221..3232886 1 NC_010645.1 carboxylesterase 3232886 estB 6266307 estB Bordetella avium 197N carboxylesterase YP_787470.1 3232221 D 360910 CDS YP_787471.1 187479446 6266932 complement(3232891..3235377) 1 NC_010645.1 acetyltransferase 3235377 6266932 BAV2976 Bordetella avium 197N acetyltransferase YP_787471.1 3232891 R 360910 CDS YP_787472.1 187479447 6266308 3235504..3236907 1 NC_010645.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 3236907 gltX 6266308 gltX Bordetella avium 197N glutamyl-tRNA synthetase YP_787472.1 3235504 D 360910 CDS YP_787473.1 187479448 6267099 complement(3236917..3238104) 1 NC_010645.1 transporter 3238104 6267099 BAV2978 Bordetella avium 197N transporter YP_787473.1 3236917 R 360910 CDS YP_787474.1 187479449 6266309 complement(3238157..3238675) 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 3238675 6266309 BAV2979 Bordetella avium 197N hypothetical protein YP_787474.1 3238157 R 360910 CDS YP_787475.1 187479450 6266310 complement(3238845..3239297) 1 NC_010645.1 AsnC/Lrp family transcriptional regulator 3239297 6266310 BAV2980 Bordetella avium 197N AsnC/Lrp family transcriptional regulator YP_787475.1 3238845 R 360910 CDS YP_787476.1 187479451 6266311 3239420..3242899 1 NC_010645.1 catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; 2-oxoacid ferredoxin oxidoreductase 3242899 6266311 BAV2981 Bordetella avium 197N 2-oxoacid ferredoxin oxidoreductase YP_787476.1 3239420 D 360910 CDS YP_787477.1 187479452 6266312 3243201..3246113 1 NC_010645.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3246113 nrdA 6266312 nrdA Bordetella avium 197N ribonucleotide-diphosphate reductase subunit alpha YP_787477.1 3243201 D 360910 CDS YP_787478.1 187479453 6267427 3246135..3247319 1 NC_010645.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 3247319 nrdB 6267427 nrdB Bordetella avium 197N ribonucleotide-diphosphate reductase subunit beta YP_787478.1 3246135 D 360910 CDS YP_787479.1 187479454 6267428 3247623..3248348 1 NC_010645.1 histone 3248348 bph1 6267428 bph1 Bordetella avium 197N histone YP_787479.1 3247623 D 360910 CDS YP_787480.1 187479455 6266724 complement(3248423..3252817) 1 NC_010645.1 dermonecrotic toxin 3252817 dnt 6266724 dnt Bordetella avium 197N dermonecrotic toxin YP_787480.1 3248423 R 360910 CDS YP_787481.1 187479456 6266899 3253047..3253589 1 NC_010645.1 membrane protein 3253589 6266899 BAV2986 Bordetella avium 197N membrane protein YP_787481.1 3253047 D 360910 CDS YP_787482.1 187479457 6266313 complement(3253611..3255047) 1 NC_010645.1 D-alanine-D-alanyl carrier protein ligase 3255047 dltA 6266313 dltA Bordetella avium 197N D-alanine-D-alanyl carrier protein ligase YP_787482.1 3253611 R 360910 CDS YP_787483.1 187479458 6266883 complement(3255058..3256185) 1 NC_010645.1 D-alanine transferase 3256185 dltB 6266883 dltB Bordetella avium 197N D-alanine transferase YP_787483.1 3255058 R 360910 CDS YP_787484.1 187479459 6266884 complement(3256196..3256321) 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 3256321 6266884 BAV2989 Bordetella avium 197N hypothetical protein YP_787484.1 3256196 R 360910 CDS YP_787485.1 187479460 6266314 complement(3256318..3257493) 1 NC_010645.1 D-alanine transferase 3257493 dltD 6266314 dltD Bordetella avium 197N D-alanine transferase YP_787485.1 3256318 R 360910 CDS YP_787486.1 187479461 6266885 complement(3257474..3257710) 1 NC_010645.1 acyl carrier protein 3257710 6266885 BAV2991 Bordetella avium 197N acyl carrier protein YP_787486.1 3257474 R 360910 CDS YP_787487.1 187479462 6266315 complement(3257976..3258473) 1 NC_010645.1 outer membrane lipoprotein 3258473 slyB 6266315 slyB Bordetella avium 197N outer membrane lipoprotein YP_787487.1 3257976 R 360910 CDS YP_787488.1 187479463 6267758 complement(3258655..3259596) 1 NC_010645.1 adenosine kinase 3259596 adoK 6267758 adoK Bordetella avium 197N adenosine kinase YP_787488.1 3258655 R 360910 CDS YP_787489.1 187479464 6266606 complement(3259606..3260730) 1 NC_010645.1 membrane protein 3260730 6266606 BAV2994 Bordetella avium 197N membrane protein YP_787489.1 3259606 R 360910 CDS YP_787490.1 187479465 6266316 complement(3260752..3261669) 1 NC_010645.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 3261669 prmA 6266316 prmA Bordetella avium 197N ribosomal protein L11 methyltransferase YP_787490.1 3260752 R 360910 CDS YP_787491.1 187479466 6267574 complement(3261760..3263106) 1 NC_010645.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3263106 accC 6267574 accC Bordetella avium 197N acetyl-CoA carboxylase biotin carboxylase subunit YP_787491.1 3261760 R 360910 CDS YP_787492.1 187479467 6266576 complement(3263115..3263558) 1 NC_010645.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3263558 accB 6266576 accB Bordetella avium 197N acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_787492.1 3263115 R 360910 CDS YP_787493.1 187479468 6266574 complement(3263649..3264083) 1 NC_010645.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 3264083 aroQ 6266574 aroQ Bordetella avium 197N 3-dehydroquinate dehydratase YP_787493.1 3263649 R 360910 CDS YP_787494.1 187479469 6266661 complement(3264159..3264674) 1 NC_010645.1 thiol:disulfide interchange protein 3264674 6266661 BAV2999 Bordetella avium 197N thiol:disulfide interchange protein YP_787494.1 3264159 R 360910 CDS YP_787495.1 187479470 6266317 3264742..3266112 1 NC_010645.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 3266112 mpl 6266317 mpl Bordetella avium 197N UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_787495.1 3264742 D 360910 CDS YP_787496.1 187479471 6267379 3266123..3266716 1 NC_010645.1 hypothetical protein 3266716 6267379 BAV3001 Bordetella avium 197N hypothetical protein YP_787496.1 3266123 D 360910 CDS YP_787497.1 187479472 6266318 3266764..3268650 1 NC_010645.1 ribonuclease 3268650 6266318 BAV3002 Bordetella avium 197N ribonuclease YP_787497.1 3266764 D 360910 CDS YP_787498.1 187479473 6266319 <3268705..3269577 1 NC_010645.1 membrane protein 3269577 6266319 BAV3003 Bordetella avium 197N membrane protein YP_787498.1 <3268705 D 360910 CDS YP_787499.1 187479474 6266320 3269574..3270431 1 NC_010645.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3270431 aroE 6266320 aroE Bordetella avium 197N shikimate 5-dehydrogenase YP_787499.1 3269574 D 360910 CDS YP_787500.1 187479475 6266657 3270514..3271236 1 NC_010645.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3271236 mtgA 6266657 mtgA Bordetella avium 197N monofunctional biosynthetic peptidoglycan transglycosylase YP_787500.1 3270514 D 360910 CDS YP_787501.1 187479476 6267395 3271326..3272495 1 NC_010645.1 permease 3272495 6267395 BAV3006 Bordetella avium 197N permease YP_787501.1 3271326 D 360910 CDS YP_787502.1 187479477 6266321 3272543..3273379 1 NC_010645.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3273379 apaH 6266321 apaH Bordetella avium 197N diadenosine tetraphosphatase YP_787502.1 3272543 D 360910 CDS YP_787503.1 187479478 6266631 complement(3273383..3274123) 1 NC_010645.1 phospholipid/glycerol acyltransferase 3274123 6266631 BAV3008 Bordetella avium 197N phospholipid/glycerol acyltransferase YP_787503.1 3273383 R 360910 CDS YP_787504.1 187479479 6266322 complement(3274120..>3275292) 1 NC_010645.1 dihydroorotase >3275292 pyrC 6266322 pyrC Bordetella avium 197N dihydroorotase YP_787504.1 3274120 R 360910 CDS YP_787505.1 187479480 6267610 complement(3275295..3276065) 1 NC_010645.1 aspartate carbamoyltransferase 3276065 pyrB 6267610 pyrB Bordetella avium 197N aspartate carbamoyltransferase YP_787505.1 3275295 R 360910 CDS YP_787506.1 187479481 6267608 complement(3276069..3276464) 1 NC_010645.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3276464 yqgF 6267608 yqgF Bordetella avium 197N Holliday junction resolvase-like protein YP_787506.1 3276069 R 360910 CDS YP_787507.1 187479482 6267950 complement(3276457..3277050) 1 NC_010645.1 hypothetical protein 3277050 6267950 BAV3012 Bordetella avium 197N hypothetical protein YP_787507.1 3276457 R 360910 CDS YP_787508.1 187479483 6266323 complement(3277136..3277300) 1 NC_010645.1 rubredoxin 3277300 rub 6266323 rub Bordetella avium 197N rubredoxin YP_787508.1 3277136 R 360910 CDS YP_787509.1 187479484 6267736 <3277448..3278257 1 NC_010645.1 phosphomethylpyrimidine kinase 3278257 thiD 6267736 thiD Bordetella avium 197N phosphomethylpyrimidine kinase YP_787509.1 <3277448 D 360910 CDS YP_787510.1 187479485 6267799 3278254..3278904 1 NC_010645.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 3278904 thiE 6267799 thiE Bordetella avium 197N thiamine-phosphate pyrophosphorylase YP_787510.1 3278254 D 360910 CDS YP_787511.1 187479486 6267801 3278909..3280192 1 NC_010645.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3280192 hemL 6267801 hemL Bordetella avium 197N glutamate-1-semialdehyde aminotransferase YP_787511.1 3278909 D 360910 CDS YP_787512.1 187479487 6267159 3280413..3282044 1 NC_010645.1 hypothetical protein 3282044 6267159 BAV3017 Bordetella avium 197N hypothetical protein YP_787512.1 3280413 D 360910 CDS YP_787513.1 187479488 6266324 complement(3282041..3282454) 1 NC_010645.1 endoribonuclease 3282454 6266324 BAV3018 Bordetella avium 197N endoribonuclease YP_787513.1 3282041 R 360910 CDS YP_787514.1 187479489 6266325 complement(3282471..3282899) 1 NC_010645.1 4-hydroxybenzoyl CoA thioesterase 3282899 6266325 BAV3019 Bordetella avium 197N 4-hydroxybenzoyl CoA thioesterase YP_787514.1 3282471 R 360910 CDS YP_787515.1 187479490 6266326 complement(3282899..3284551) 1 NC_010645.1 2-aminobenzoate-CoA ligase 3284551 6266326 BAV3020 Bordetella avium 197N 2-aminobenzoate-CoA ligase YP_787515.1 3282899 R 360910 CDS YP_787516.1 187479491 6266327 complement(3284590..3285747) 1 NC_010645.1 acyl-CoA dehydrogenase 3285747 6266327 BAV3021 Bordetella avium 197N acyl-CoA dehydrogenase YP_787516.1 3284590 R 360910 CDS YP_787517.1 187479492 6266328 complement(3285751..3286596) 1 NC_010645.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3286596 6266328 BAV3022 Bordetella avium 197N enoyl-CoA hydratase YP_787517.1 3285751 R 360910 CDS YP_787518.1 187479493 6266329 complement(3286613..3287401) 1 NC_010645.1 D-beta-hydroxybutyrate dehydrogenase 3287401 6266329 BAV3023 Bordetella avium 197N D-beta-hydroxybutyrate dehydrogenase YP_787518.1 3286613 R 360910 CDS YP_787519.1 187479494 6266330 complement(3287398..3289743) 1 NC_010645.1 catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; salicylyl-CoA 5-hydroxylase 3289743 6266330 BAV3024 Bordetella avium 197N salicylyl-CoA 5-hydroxylase YP_787519.1 3287398 R 360910 CDS YP_787520.1 187479495 6266331 complement(3289882..3290679) 1 NC_010645.1 signaling protein 3290679 6266331 BAV3025 Bordetella avium 197N signaling protein YP_787520.1 3289882 R 360910 CDS YP_787521.1 187479496 6266332 complement(3290676..3291056) 1 NC_010645.1 hypothetical protein 3291056 6266332 BAV3026 Bordetella avium 197N hypothetical protein YP_787521.1 3290676 R 360910 CDS YP_787522.1 187479497 6266333 complement(3291090..3291629) 1 NC_010645.1 hypothetical protein 3291629 6266333 BAV3027 Bordetella avium 197N hypothetical protein YP_787522.1 3291090 R 360910 CDS YP_787523.1 187479498 6266334 complement(3291651..3293639) 1 NC_010645.1 sensor kinase 3293639 6266334 BAV3028 Bordetella avium 197N sensor kinase YP_787523.1 3291651 R 360910 CDS YP_787524.1 187479499 6266335 complement(3293931..3294635) 1 NC_010645.1 ABC transporter ATP-binding protein 3294635 6266335 BAV3029 Bordetella avium 197N ABC transporter ATP-binding protein YP_787524.1 3293931 R 360910 CDS YP_787525.1 187479500 6266336 complement(3294629..3295411) 1 NC_010645.1 ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 3295411 6266336 BAV3030 Bordetella avium 197N ABC transporter ATP-binding protein YP_787525.1 3294629 R 360910 CDS YP_787526.1 187479501 6266337 complement(3295408..3296361) 1 NC_010645.1 ABC transporter permease 3296361 6266337 BAV3031 Bordetella avium 197N ABC transporter permease YP_787526.1 3295408 R 360910 CDS YP_787527.1 187479502 6266338 complement(3296369..3297289) 1 NC_010645.1 ABC transporter permease 3297289 6266338 BAV3032 Bordetella avium 197N ABC transporter permease YP_787527.1 3296369 R 360910 CDS YP_787528.1 187479503 6266339 complement(3297352..3298515) 1 NC_010645.1 ABC transporter substrate-binding protein 3298515 6266339 BAV3033 Bordetella avium 197N ABC transporter substrate-binding protein YP_787528.1 3297352 R 360910 CDS YP_787529.1 187479504 6266340 3298864..3299349 1 NC_010645.1 MarR family transcriptional regulator 3299349 6266340 BAV3034 Bordetella avium 197N MarR family transcriptional regulator YP_787529.1 3298864 D 360910 CDS YP_787530.1 187479505 6266341 3299397..3300392 1 NC_010645.1 membrane protein 3300392 6266341 BAV3035 Bordetella avium 197N membrane protein YP_787530.1 3299397 D 360910 CDS YP_787531.1 187479506 6266342 3300481..3301707 1 NC_010645.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 3301707 argJ 6266342 argJ Bordetella avium 197N bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein YP_787531.1 3300481 D 360910 CDS YP_787532.1 187479507 6266650 <3301871..3302737 1 NC_010645.1 hypothetical protein 3302737 6266650 BAV3037 Bordetella avium 197N hypothetical protein YP_787532.1 <3301871 D 360910 CDS YP_787533.1 187479508 6266343 3302730..3303695 1 NC_010645.1 hypothetical protein 3303695 6266343 BAV3038 Bordetella avium 197N hypothetical protein YP_787533.1 3302730 D 360910 CDS YP_787534.1 187479509 6266344 3303834..3304430 1 NC_010645.1 One of 11 fimbrial subunits; fimbrial subunit 3304430 6266344 BAV3039 Bordetella avium 197N fimbrial subunit YP_787534.1 3303834 D 360910 CDS YP_787535.1 187479510 6266345 complement(3304405..3305841) 1 NC_010645.1 multidrug efflux system outer membrane protein 3305841 6266345 BAV3040 Bordetella avium 197N multidrug efflux system outer membrane protein YP_787535.1 3304405 R 360910 CDS YP_787536.1 187479511 6266346 complement(3305838..3308948) 1 NC_010645.1 multidrug efflux system transmembrane protein 3308948 6266346 BAV3041 Bordetella avium 197N multidrug efflux system transmembrane protein YP_787536.1 3305838 R 360910 CDS YP_787537.1 187479512 6266347 complement(3308945..>3312031) 1 NC_010645.1 multidrug efflux system transmembrane protein >3312031 6266347 BAV3042 Bordetella avium 197N multidrug efflux system transmembrane protein YP_787537.1 3308945 R 360910 CDS YP_787538.1 187479513 6266348 complement(3312038..3313273) 1 NC_010645.1 multidrug efflux system inner membrane protein 3313273 6266348 BAV3043 Bordetella avium 197N multidrug efflux system inner membrane protein YP_787538.1 3312038 R 360910 CDS YP_787539.1 187479514 6266349 complement(3313450..>3314202) 1 NC_010645.1 hypothetical protein >3314202 6266349 BAV3044 Bordetella avium 197N hypothetical protein YP_787539.1 3313450 R 360910 CDS YP_787540.1 187479515 6266350 complement(3314248..3314889) 1 NC_010645.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 3314889 coaE 6266350 coaE Bordetella avium 197N dephospho-CoA kinase YP_787540.1 3314248 R 360910 CDS YP_787541.1 187479516 6266799 complement(3314901..3315653) 1 NC_010645.1 type 4 prepilin-like protein leader peptide processing enzyme 3315653 6266799 BAV3046 Bordetella avium 197N type 4 prepilin-like protein leader peptide processing enzyme YP_787541.1 3314901 R 360910 CDS YP_787542.1 187479517 6266351 3315896..3316567 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 3316567 6266351 BAV3047 Bordetella avium 197N hypothetical protein YP_787542.1 3315896 D 360910 CDS YP_787543.1 187479518 6266352 complement(3316925..3317767) 1 NC_010645.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3317767 panC 6266352 panC Bordetella avium 197N pantoate--beta-alanine ligase YP_787543.1 3316925 R 360910 CDS YP_787544.1 187479519 6267482 complement(3317800..3318681) 1 NC_010645.1 hypothetical protein 3318681 6267482 BAV3049 Bordetella avium 197N hypothetical protein YP_787544.1 3317800 R 360910 CDS YP_787545.1 187479520 6266353 complement(3318704..3318907) 1 NC_010645.1 hypothetical protein 3318907 6266353 BAV3050 Bordetella avium 197N hypothetical protein YP_787545.1 3318704 R 360910 CDS YP_787546.1 187479521 6266354 3319076..3320461 1 NC_010645.1 transporter 3320461 6266354 BAV3051 Bordetella avium 197N transporter YP_787546.1 3319076 D 360910 CDS YP_787547.1 187479522 6266355 3320451..3321950 1 NC_010645.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 3321950 glpK 6266355 glpK Bordetella avium 197N glycerol kinase YP_787547.1 3320451 D 360910 CDS YP_787548.1 187479523 6267094 complement(3321958..>3322365) 1 NC_010645.1 membrane protein >3322365 6267094 BAV3053 Bordetella avium 197N membrane protein YP_787548.1 3321958 R 360910 CDS YP_787549.1 187479524 6266356 complement(3322383..3323399) 1 NC_010645.1 hypothetical protein 3323399 6266356 BAV3054 Bordetella avium 197N hypothetical protein YP_787549.1 3322383 R 360910 CDS YP_787550.1 187479525 6266357 complement(3323533..3324273) 1 NC_010645.1 L-amino acid ABC transporter ATP-binding protein 3324273 aapP 6266357 aapP Bordetella avium 197N L-amino acid ABC transporter ATP-binding protein YP_787550.1 3323533 R 360910 CDS YP_787551.1 187479526 6266568 complement(3324323..3325423) 1 NC_010645.1 L-amino acid ABC transporter permease 3325423 aapM 6266568 aapM Bordetella avium 197N L-amino acid ABC transporter permease YP_787551.1 3324323 R 360910 CDS YP_787552.1 187479527 6266567 complement(3325425..3326603) 1 NC_010645.1 L-amino acid ABC transporter permease 3326603 aapQ 6266567 aapQ Bordetella avium 197N L-amino acid ABC transporter permease YP_787552.1 3325425 R 360910 CDS YP_787553.1 187479528 6266569 complement(3326708..3327724) 1 NC_010645.1 L-amino acid ABC transporter substrate-binding protein 3327724 aapJ 6266569 aapJ Bordetella avium 197N L-amino acid ABC transporter substrate-binding protein YP_787553.1 3326708 R 360910 CDS YP_787554.1 187479529 6266566 3327975..3328646 1 NC_010645.1 cell division ATP-binding protein 3328646 ftsE 6266566 ftsE Bordetella avium 197N cell division ATP-binding protein YP_787554.1 3327975 D 360910 CDS YP_787555.1 187479530 6267034 3328643..3329551 1 NC_010645.1 cell division protein 3329551 ftsX 6267034 ftsX Bordetella avium 197N cell division protein YP_787555.1 3328643 D 360910 CDS YP_787556.1 187479531 6267042 3329812..3330492 1 NC_010645.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 3330492 6267042 BAV3061 Bordetella avium 197N chemoreceptor glutamine deamidase CheD YP_787556.1 3329812 D 360910 CDS YP_787557.1 187479532 6266358 complement(3330524..3334144) 1 NC_010645.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 3334144 6266358 BAV3062 Bordetella avium 197N indolepyruvate ferredoxin oxidoreductase YP_787557.1 3330524 R 360910 CDS YP_787558.1 187479533 6266359 3334300..3335367 1 NC_010645.1 A/G-specific adenine glycosylase 3335367 micA 6266359 micA Bordetella avium 197N A/G-specific adenine glycosylase YP_787558.1 3334300 D 360910 CDS YP_787559.1 187479534 6267353 complement(3335309..3336175) 1 NC_010645.1 hypothetical protein 3336175 6267353 BAV3064 Bordetella avium 197N hypothetical protein YP_787559.1 3335309 R 360910 CDS YP_787560.1 187479535 6266360 3336256..3337020 1 NC_010645.1 methyltransferase 3337020 6266360 BAV3065 Bordetella avium 197N methyltransferase YP_787560.1 3336256 D 360910 CDS YP_787561.1 187479536 6266361 complement(3337028..>3340804) 1 NC_010645.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase >3340804 metH 6266361 metH Bordetella avium 197N B12-dependent methionine synthase YP_787561.1 3337028 R 360910 CDS YP_787562.1 187479537 6267339 <3341112..3343082 1 NC_010645.1 TonB-dependent vitamin B12 receptor 3343082 btuB 6267339 btuB Bordetella avium 197N TonB-dependent vitamin B12 receptor YP_787562.1 <3341112 D 360910 CDS YP_787563.1 187479538 6266744 3343098..3344003 1 NC_010645.1 vitamin B12 transport protein 3344003 btuF 6266744 btuF Bordetella avium 197N vitamin B12 transport protein YP_787563.1 3343098 D 360910 CDS YP_787564.1 187479539 6266745 3344268..3345065 1 NC_010645.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 3345065 thiG 6266745 thiG Bordetella avium 197N thiazole synthase YP_787564.1 3344268 D 360910 CDS YP_787565.1 187479540 6267803 3345062..3345886 1 NC_010645.1 phosphomethylpyrimidine kinase 3345886 thiD 6267803 thiD Bordetella avium 197N phosphomethylpyrimidine kinase YP_787565.1 3345062 D 360910 CDS YP_787566.1 187479541 6267800 3345957..3346637 1 NC_010645.1 protein-L-isoaspartate O-methyltransferase 3346637 pcm 6267800 pcm Bordetella avium 197N protein-L-isoaspartate O-methyltransferase YP_787566.1 3345957 D 360910 CDS YP_787567.1 187479542 6267491 3346643..3347968 1 NC_010645.1 outer membrane protein 3347968 tolC 6267491 tolC Bordetella avium 197N outer membrane protein YP_787567.1 3346643 D 360910 CDS YP_787568.1 187479543 6267817 complement(3347977..3348465) 1 NC_010645.1 Similar to the C-terminal region of Escherichia coli bifunctional protein HldE. this region encodes D-beta-D- heptose 1-phosphate adenosyltransferase that is involved in inner core lipopolysaccharide biosynthesis.; transferase 3348465 aut 6267817 aut Bordetella avium 197N transferase YP_787568.1 3347977 R 360910 CDS YP_787569.1 187479544 6266686 complement(3348503..3349390) 1 NC_010645.1 hypothetical protein 3349390 6266686 BAV3074 Bordetella avium 197N hypothetical protein YP_787569.1 3348503 R 360910 CDS YP_787570.1 187479545 6266362 complement(3349573..3351126) 1 NC_010645.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB 3351126 ubiB 6266362 ubiB Bordetella avium 197N putative ubiquinone biosynthesis protein UbiB YP_787570.1 3349573 R 360910 CDS YP_787571.1 187479546 6266570 complement(3351123..3351758) 1 NC_010645.1 hypothetical protein 3351758 6266570 BAV3076 Bordetella avium 197N hypothetical protein YP_787571.1 3351123 R 360910 CDS YP_787572.1 187479547 6266363 complement(3351837..3352988) 1 NC_010645.1 exopolysaccharide biosynthesis aminotransferase 3352988 6266363 BAV3077 Bordetella avium 197N exopolysaccharide biosynthesis aminotransferase YP_787572.1 3351837 R 360910 CDS YP_787573.1 187479548 6266364 complement(3352985..3353566) 1 NC_010645.1 exopolysaccharide biosynthesis glycosyl transferase 3353566 6266364 BAV3078 Bordetella avium 197N exopolysaccharide biosynthesis glycosyl transferase YP_787573.1 3352985 R 360910 CDS YP_787574.1 187479549 6266365 complement(3353569..3354216) 1 NC_010645.1 O-acyltransferase 3354216 6266365 BAV3079 Bordetella avium 197N O-acyltransferase YP_787574.1 3353569 R 360910 CDS YP_787575.1 187479550 6266366 complement(3354219..3355367) 1 NC_010645.1 dioxygenase 3355367 6266366 BAV3080 Bordetella avium 197N dioxygenase YP_787575.1 3354219 R 360910 CDS YP_787576.1 187479551 6266367 complement(3355364..3355978) 1 NC_010645.1 glycosyl transferase 3355978 6266367 BAV3081 Bordetella avium 197N glycosyl transferase YP_787576.1 3355364 R 360910 CDS YP_787577.1 187479552 6266368 complement(3355975..3356694) 1 NC_010645.1 short-chain dehydrogenase/reductase 3356694 6266368 BAV3082 Bordetella avium 197N short-chain dehydrogenase/reductase YP_787577.1 3355975 R 360910 CDS YP_787578.1 187479553 6266369 complement(3356691..3357356) 1 NC_010645.1 short-chain dehydrogenase/reductase 3357356 6266369 BAV3083 Bordetella avium 197N short-chain dehydrogenase/reductase YP_787578.1 3356691 R 360910 CDS YP_787579.1 187479554 6266370 complement(3357367..>3358458) 1 NC_010645.1 3-oxoacyl-[acyl-carrier-protein] synthase >3358458 6266370 BAV3084 Bordetella avium 197N 3-oxoacyl-[acyl-carrier-protein] synthase YP_787579.1 3357367 R 360910 CDS YP_787580.1 187479555 6266371 complement(3358455..>3358712) 1 NC_010645.1 acyl carrier protein >3358712 6266371 BAV3085 Bordetella avium 197N acyl carrier protein YP_787580.1 3358455 R 360910 CDS YP_787581.1 187479556 6266372 complement(3358705..3359451) 1 NC_010645.1 O-antigen export ABC transporter ATP-binding protein 3359451 6266372 BAV3086 Bordetella avium 197N O-antigen export ABC transporter ATP-binding protein YP_787581.1 3358705 R 360910 CDS YP_787582.1 187479557 6266373 complement(3359453..3360223) 1 NC_010645.1 O-antigen export ABC transporter permease 3360223 6266373 BAV3087 Bordetella avium 197N O-antigen export ABC transporter permease YP_787582.1 3359453 R 360910 CDS YP_787583.1 187479558 6266374 complement(3360531..3361517) 1 NC_010645.1 membrane protein 3361517 6266374 BAV3088 Bordetella avium 197N membrane protein YP_787583.1 3360531 R 360910 CDS YP_787584.1 187479559 6266375 complement(3361662..3362432) 1 NC_010645.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 3362432 ubiE 6266375 ubiE Bordetella avium 197N ubiquinone/menaquinone biosynthesis methyltransferase YP_787584.1 3361662 R 360910 CDS YP_787585.1 187479560 6267911 3362574..3363272 1 NC_010645.1 phosphate regulon two-component response regulator 3363272 phoB 6267911 phoB Bordetella avium 197N phosphate regulon two-component response regulator YP_787585.1 3362574 D 360910 CDS YP_787586.1 187479561 6267529 3363285..3364607 1 NC_010645.1 phosphate regulon two-component system sensor kinase 3364607 phoR 6267529 phoR Bordetella avium 197N phosphate regulon two-component system sensor kinase YP_787586.1 3363285 D 360910 CDS YP_787587.1 187479562 6267530 3364748..3365209 1 NC_010645.1 hypothetical protein 3365209 6267530 BAV3092 Bordetella avium 197N hypothetical protein YP_787587.1 3364748 D 360910 CDS YP_787588.1 187479563 6266376 3365362..3366561 1 NC_010645.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3366561 serA 6266376 serA Bordetella avium 197N D-3-phosphoglycerate dehydrogenase YP_787588.1 3365362 D 360910 CDS YP_787589.1 187479564 6267753 complement(3366567..3367448) 1 NC_010645.1 LysR family transcriptional regulator 3367448 brg1 6267753 brg1 Bordetella avium 197N LysR family transcriptional regulator YP_787589.1 3366567 R 360910 CDS YP_787590.1 187479565 6266739 3367591..3368022 1 NC_010645.1 dioxygenase 3368022 6266739 BAV3095 Bordetella avium 197N dioxygenase YP_787590.1 3367591 D 360910 CDS YP_787591.1 187479566 6266377 3368044..3368769 1 NC_010645.1 Also similar to BAV3298 (28.6 38d).; histidine kinase inhibitor 3368769 kipI 6266377 kipI Bordetella avium 197N histidine kinase inhibitor YP_787591.1 3368044 D 360910 CDS YP_787592.1 187479567 6267276 3368766..3369782 1 NC_010645.1 Also similar to BAV3297 (36.8 38d); histidine kinase inhibitor antagonist 3369782 kipA 6267276 kipA Bordetella avium 197N histidine kinase inhibitor antagonist YP_787592.1 3368766 D 360910 CDS YP_787593.1 187479568 6267275 3369779..3370537 1 NC_010645.1 LamB/YcsF family protein 3370537 6267275 BAV3098 Bordetella avium 197N LamB/YcsF family protein YP_787593.1 3369779 D 360910 CDS YP_787594.1 187479569 6266378 complement(3370534..3371313) 1 NC_010645.1 GntR family transcriptional regulator 3371313 6266378 BAV3099 Bordetella avium 197N GntR family transcriptional regulator YP_787594.1 3370534 R 360910 CDS YP_787595.1 187479570 6266379 complement(3371344..3375306) 1 NC_010645.1 FAD-linked oxidase 3375306 6266379 BAV3100 Bordetella avium 197N FAD-linked oxidase YP_787595.1 3371344 R 360910 CDS YP_787596.1 187479571 6266380 complement(3375421..3375942) 1 NC_010645.1 membrane protein 3375942 6266380 BAV3101 Bordetella avium 197N membrane protein YP_787596.1 3375421 R 360910 CDS YP_787597.1 187479572 6266381 3376035..3377543 1 NC_010645.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 3377543 ilvA 6266381 ilvA Bordetella avium 197N threonine dehydratase YP_787597.1 3376035 D 360910 CDS YP_787598.1 187479573 6267234 complement(3377733..3378845) 1 NC_010645.1 outer membrane porin 3378845 6267234 BAV3103 Bordetella avium 197N outer membrane porin YP_787598.1 3377733 R 360910 CDS YP_787599.1 187479574 6266382 3379111..3379326 1 NC_010645.1 hypothetical protein 3379326 6266382 BAV3104 Bordetella avium 197N hypothetical protein YP_787599.1 3379111 D 360910 CDS YP_787600.1 187479575 6266383 3379475..3380365 1 NC_010645.1 LysR family transcriptional regulator 3380365 6266383 BAV3105 Bordetella avium 197N LysR family transcriptional regulator YP_787600.1 3379475 D 360910 CDS YP_787601.1 187479576 6266384 complement(3380392..3380940) 1 NC_010645.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 3380940 apt 6266384 apt Bordetella avium 197N adenine phosphoribosyltransferase YP_787601.1 3380392 R 360910 CDS YP_787602.1 187479577 6266637 complement(3381003..3382652) 1 NC_010645.1 ABC transporter ATP-binding protein 3382652 cydC 6266637 cydC Bordetella avium 197N ABC transporter ATP-binding protein YP_787602.1 3381003 R 360910 CDS YP_787603.1 187479578 6266832 complement(3382654..>3384393) 1 NC_010645.1 ABC transporter ATP-binding protein >3384393 cydD 6266832 cydD Bordetella avium 197N ABC transporter ATP-binding protein YP_787603.1 3382654 R 360910 CDS YP_787604.1 187479579 6266833 complement(3384390..3384515) 1 NC_010645.1 hypothetical protein 3384515 6266833 BAV3109 Bordetella avium 197N hypothetical protein YP_787604.1 3384390 R 360910 CDS YP_787605.1 187479580 6266385 complement(3384530..3385681) 1 NC_010645.1 Also similar to BAV0992 (44.3 38d 0d.); cytochrome D ubiquinol oxidase subunit II 3385681 cydB2 6266385 cydB2 Bordetella avium 197N cytochrome D ubiquinol oxidase subunit II YP_787605.1 3384530 R 360910 CDS YP_787606.1 187479581 6266831 complement(3385699..3387276) 1 NC_010645.1 Also similar to BAV0991 (54.6 38d.); cytochrome D ubiquinol oxidase subunit I 3387276 cydA2 6266831 cydA2 Bordetella avium 197N cytochrome D ubiquinol oxidase subunit I YP_787606.1 3385699 R 360910 CDS YP_787607.1 187479582 6266829 complement(3387333..>3387905) 1 NC_010645.1 hypothetical protein >3387905 6266829 BAV3112 Bordetella avium 197N hypothetical protein YP_787607.1 3387333 R 360910 CDS YP_787608.1 187479583 6266386 complement(3388164..3389381) 1 NC_010645.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 3389381 purT 6266386 purT Bordetella avium 197N phosphoribosylglycinamide formyltransferase 2 YP_787608.1 3388164 R 360910 CDS YP_787609.1 187479584 6267604 3389500..3390486 1 NC_010645.1 arabinose 5-phosphate isomerase 3390486 kdsD 6267604 kdsD Bordetella avium 197N arabinose 5-phosphate isomerase YP_787609.1 3389500 D 360910 CDS YP_787610.1 187479585 6267272 3390483..3391094 1 NC_010645.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3391094 kdsC 6267272 kdsC Bordetella avium 197N 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_787610.1 3390483 D 360910 CDS YP_787611.1 187479586 6267271 3391100..3391723 1 NC_010645.1 hypothetical protein 3391723 6267271 BAV3116 Bordetella avium 197N hypothetical protein YP_787611.1 3391100 D 360910 CDS YP_787612.1 187479587 6266387 3391720..3392325 1 NC_010645.1 hypothetical protein 3392325 6266387 BAV3117 Bordetella avium 197N hypothetical protein YP_787612.1 3391720 D 360910 CDS YP_787613.1 187479588 6266388 3392362..3393141 1 NC_010645.1 ABC transporter ATP-binding protein 3393141 6266388 BAV3118 Bordetella avium 197N ABC transporter ATP-binding protein YP_787613.1 3392362 D 360910 CDS YP_787614.1 187479589 6266389 complement(3393185..3394426) 1 NC_010645.1 heat shock protein 3394426 6266389 BAV3119 Bordetella avium 197N heat shock protein YP_787614.1 3393185 R 360910 CDS YP_787615.1 187479590 6266390 complement(3394663..3395739) 1 NC_010645.1 similar over its C-terminal region to BAV2217 (45.399 38d.); Ada regulatory protein 3395739 ada 6266390 ada Bordetella avium 197N Ada regulatory protein YP_787615.1 3394663 R 360910 CDS YP_787616.1 187479591 6266597 complement(3395833..3396474) 1 NC_010645.1 alkylated DNA repair protein 3396474 aidD 6266597 aidD Bordetella avium 197N alkylated DNA repair protein YP_787616.1 3395833 R 360910 CDS YP_787617.1 187479592 6266610 complement(3396557..3397456) 1 NC_010645.1 LysR family transcriptional regulator 3397456 6266610 BAV3122 Bordetella avium 197N LysR family transcriptional regulator YP_787617.1 3396557 R 360910 CDS YP_787618.1 187479593 6266391 3397606..3398586 1 NC_010645.1 hypothetical protein 3398586 6266391 BAV3123 Bordetella avium 197N hypothetical protein YP_787618.1 3397606 D 360910 CDS YP_787619.1 187479594 6266392 3398590..3399789 1 NC_010645.1 amidohydrolase/peptidase 3399789 6266392 BAV3124 Bordetella avium 197N amidohydrolase/peptidase YP_787619.1 3398590 D 360910 CDS YP_787620.1 187479595 6266393 <3399786..3400478 1 NC_010645.1 Involved in nucleotide synthesis and salvage; phosphoribosyltransferase 3400478 6266393 BAV3125 Bordetella avium 197N phosphoribosyltransferase YP_787620.1 <3399786 D 360910 CDS YP_787621.1 187479596 6266394 3400905..3402461 1 NC_010645.1 FAD-dependent oxidoreductase 3402461 6266394 BAV3126 Bordetella avium 197N FAD-dependent oxidoreductase YP_787621.1 3400905 D 360910 CDS YP_787622.1 187479597 6266395 3402458..3402631 1 NC_010645.1 hypothetical protein 3402631 6266395 BAV3127 Bordetella avium 197N hypothetical protein YP_787622.1 3402458 D 360910 CDS YP_787623.1 187479598 6266396 3402665..3403621 1 NC_010645.1 hypothetical protein 3403621 6266396 BAV3128 Bordetella avium 197N hypothetical protein YP_787623.1 3402665 D 360910 CDS YP_787624.1 187479599 6266397 3403672..3404133 1 NC_010645.1 MarR family transcriptional regulator 3404133 6266397 BAV3129 Bordetella avium 197N MarR family transcriptional regulator YP_787624.1 3403672 D 360910 CDS YP_787625.1 187479600 6266398 complement(3404139..3404924) 1 NC_010645.1 with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 3404924 hmuV 6266398 hmuV Bordetella avium 197N hemin importer ATP-binding subunit YP_787625.1 3404139 R 360910 CDS YP_787626.1 187479601 6266712 complement(3404924..3405928) 1 NC_010645.1 hemin ABC transporter permease 3405928 bhuU 6266712 bhuU Bordetella avium 197N hemin ABC transporter permease YP_787626.1 3404924 R 360910 CDS YP_787627.1 187479602 6266711 complement(3405912..3406745) 1 NC_010645.1 hemin ABC transporter substrate-binding protein 3406745 bhuT 6266711 bhuT Bordetella avium 197N hemin ABC transporter substrate-binding protein YP_787627.1 3405912 R 360910 CDS YP_787628.1 187479603 6266710 complement(3406753..3407799) 1 NC_010645.1 heme degradase 3407799 bhuS 6266710 bhuS Bordetella avium 197N heme degradase YP_787628.1 3406753 R 360910 CDS YP_787629.1 187479604 6266709 complement(3407856..3410330) 1 NC_010645.1 outer membrane TonB-dependent heme receptor 3410330 bhuR 6266709 bhuR Bordetella avium 197N outer membrane TonB-dependent heme receptor YP_787629.1 3407856 R 360910 CDS YP_787630.1 187479605 6266708 complement(3410526..3411449) 1 NC_010645.1 heme uptake transmembrane sensor 3411449 hurR 6266708 hurR Bordetella avium 197N heme uptake transmembrane sensor YP_787630.1 3410526 R 360910 CDS YP_787631.1 187479606 6267222 complement(3411446..3411961) 1 NC_010645.1 heme uptake RNA polymerase sigma-70 factor 3411961 hurI 6267222 hurI Bordetella avium 197N heme uptake RNA polymerase sigma-70 factor YP_787631.1 3411446 R 360910 CDS YP_787632.1 187479607 6267221 3412276..3413274 1 NC_010645.1 hypothetical protein 3413274 6267221 BAV3137 Bordetella avium 197N hypothetical protein YP_787632.1 3412276 D 360910 CDS YP_787633.1 187479608 6266399 3413258..3414046 1 NC_010645.1 exported polysaccharide deacetylase 3414046 6266399 BAV3138 Bordetella avium 197N exported polysaccharide deacetylase YP_787633.1 3413258 D 360910 CDS YP_787634.1 187479609 6266400 3414053..3415042 1 NC_010645.1 membrane protein 3415042 6266400 BAV3139 Bordetella avium 197N membrane protein YP_787634.1 3414053 D 360910 CDS YP_787635.1 187479610 6266401 complement(3415011..3415511) 1 NC_010645.1 acyl-CoA thioester hydrolase 3415511 6266401 BAV3140 Bordetella avium 197N acyl-CoA thioester hydrolase YP_787635.1 3415011 R 360910 CDS YP_787636.1 187479611 6266402 complement(3415553..3416974) 1 NC_010645.1 hypothetical protein 3416974 6266402 BAV3141 Bordetella avium 197N hypothetical protein YP_787636.1 3415553 R 360910 CDS YP_787637.1 187479612 6266403 join(3417241..3417828,3417832..3420309) 1 NC_010645.1 the active-site selenocysteine, residue 197, is encoded by an opal stop codon; formate dehydrogenase, major subunit 3420309 fdnG 6266403 fdnG Bordetella avium 197N formate dehydrogenase, major subunit YP_787637.1 3417241 D 360910 CDS YP_787638.1 187479613 6266406 3420319..3421218 1 NC_010645.1 formate dehydrogenase, iron-sulfur subunit 3421218 fdnH 6266406 fdnH Bordetella avium 197N formate dehydrogenase, iron-sulfur subunit YP_787638.1 3420319 D 360910 CDS YP_787639.1 187479614 6266961 3421211..3421858 1 NC_010645.1 formate dehydrogenase, cytochrome b556 3421858 fdnI 6266961 fdnI Bordetella avium 197N formate dehydrogenase, cytochrome b556 YP_787639.1 3421211 D 360910 CDS YP_787640.1 187479615 6266962 3421938..3422873 1 NC_010645.1 formate dehydrogenase formation protein 3422873 fdhE 6266962 fdhE Bordetella avium 197N formate dehydrogenase formation protein YP_787640.1 3421938 D 360910 CDS YP_787641.1 187479616 6266958 3422870..3424273 1 NC_010645.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 3424273 selA 6266958 selA Bordetella avium 197N selenocysteine synthase YP_787641.1 3422870 D 360910 CDS YP_787642.1 187479617 6267751 3424270..3426180 1 NC_010645.1 selenocysteine-specific elongation factor 3426180 SelB(TCA) 6267751 SelB(TCA) Bordetella avium 197N selenocysteine-specific elongation factor YP_787642.1 3424270 D 360910 CDS YP_787643.1 187479618 6267962 3426329..3427378 1 NC_010645.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 3427378 fdhB 6267962 fdhB Bordetella avium 197N selenophosphate synthetase YP_787643.1 3426329 D 360910 CDS YP_787644.1 187479619 6266956 complement(3427503..3428402) 1 NC_010645.1 LysR family transcriptional regulator 3428402 6266956 BAV3150 Bordetella avium 197N LysR family transcriptional regulator YP_787644.1 3427503 R 360910 CDS YP_787645.1 187479620 6266407 3428593..3429219 1 NC_010645.1 isomerase 3429219 6266407 BAV3151 Bordetella avium 197N isomerase YP_787645.1 3428593 D 360910 CDS YP_787646.1 187479621 6266408 complement(3429220..3430008) 1 NC_010645.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 3430008 trpC 6266408 trpC Bordetella avium 197N indole-3-glycerol-phosphate synthase YP_787646.1 3429220 R 360910 CDS YP_787647.1 187479622 6267894 complement(3430005..3431036) 1 NC_010645.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 3431036 trpD 6267894 trpD Bordetella avium 197N anthranilate phosphoribosyltransferase YP_787647.1 3430005 R 360910 CDS YP_787648.1 187479623 6267895 complement(3431053..3431616) 1 NC_010645.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 3431616 pabA 6267895 pabA Bordetella avium 197N anthranilate synthase component II YP_787648.1 3431053 R 360910 CDS YP_787649.1 187479624 6267479 3432245..3432577 1 NC_010645.1 sigma(54) modulation protein 3432577 6267479 BAV3155 Bordetella avium 197N sigma(54) modulation protein YP_787649.1 3432245 D 360910 CDS YP_787650.1 187479625 6266409 3432650..3432790 1 NC_010645.1 hypothetical protein 3432790 6266409 BAV3155A Bordetella avium 197N hypothetical protein YP_787650.1 3432650 D 360910 CDS YP_787651.1 187479626 6266410 3432790..3433254 1 NC_010645.1 nitrogen regulatory IIA protein 3433254 ptsN 6266410 ptsN Bordetella avium 197N nitrogen regulatory IIA protein YP_787651.1 3432790 D 360910 CDS YP_787652.1 187479627 6267592 3433268..3434194 1 NC_010645.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 3434194 hprK 6267592 hprK Bordetella avium 197N HPr kinase/phosphorylase YP_787652.1 3433268 D 360910 CDS YP_787653.1 187479628 6267204 3434293..3435165 1 NC_010645.1 hypothetical protein 3435165 6267204 BAV3158 Bordetella avium 197N hypothetical protein YP_787653.1 3434293 D 360910 CDS YP_787654.1 187479629 6266411 3435162..3436049 1 NC_010645.1 lipoprotein 3436049 6266411 BAV3159 Bordetella avium 197N lipoprotein YP_787654.1 3435162 D 360910 CDS YP_787655.1 187479630 6266412 complement(3436060..3436617) 1 NC_010645.1 methylated-DNA--protein-cysteine methyltransferase 3436617 ogt 6266412 ogt Bordetella avium 197N methylated-DNA--protein-cysteine methyltransferase YP_787655.1 3436060 R 360910 CDS YP_787656.1 187479631 6267454 complement(3436614..3437546) 1 NC_010645.1 uroporphyrin-III C/tetrapyrrole methyltransferase 3437546 6267454 BAV3161 Bordetella avium 197N uroporphyrin-III C/tetrapyrrole methyltransferase YP_787656.1 3436614 R 360910 CDS YP_787657.1 187479632 6266413 3437587..3438024 1 NC_010645.1 hypothetical protein 3438024 6266413 BAV3162 Bordetella avium 197N hypothetical protein YP_787657.1 3437587 D 360910 CDS YP_787658.1 187479633 6266414 3438059..3438652 1 NC_010645.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 3438652 gmhA 6266414 gmhA Bordetella avium 197N phosphoheptose isomerase YP_787658.1 3438059 D 360910 CDS YP_787659.1 187479634 6267104 3438652..3439389 1 NC_010645.1 transport lipoprotein 3439389 6267104 BAV3164 Bordetella avium 197N transport lipoprotein YP_787659.1 3438652 D 360910 CDS YP_787660.1 187479635 6266415 3439386..3439880 1 NC_010645.1 thiol-disulfide oxidoreductase 3439880 6266415 BAV3165 Bordetella avium 197N thiol-disulfide oxidoreductase YP_787660.1 3439386 D 360910 CDS YP_787661.1 187479636 6266416 complement(3439931..3440719) 1 NC_010645.1 Also similar to BAV2852 (55.8 38d.); hypothetical protein 3440719 6266416 BAV3166 Bordetella avium 197N hypothetical protein YP_787661.1 3439931 R 360910 CDS YP_787662.1 187479637 6266417 3440958..3441860 1 NC_010645.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 3441860 argB 6266417 argB Bordetella avium 197N acetylglutamate kinase YP_787662.1 3440958 D 360910 CDS YP_787663.1 187479638 6266642 3441860..3442603 1 NC_010645.1 phosphatase 3442603 6266642 BAV3168 Bordetella avium 197N phosphatase YP_787663.1 3441860 D 360910 CDS YP_787664.1 187479639 6266418 3442633..3443208 1 NC_010645.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3443208 slmA 6266418 slmA Bordetella avium 197N nucleoid occlusion protein YP_787664.1 3442633 D 360910 CDS YP_787665.1 187479640 6266419 3443361..3444857 1 NC_010645.1 transporter 3444857 6266419 BAV3170 Bordetella avium 197N transporter YP_787665.1 3443361 D 360910 CDS YP_787666.1 187479641 6266420 3444868..3445920 1 NC_010645.1 L-lactate dehydrogenase 3445920 ldh 6266420 ldh Bordetella avium 197N L-lactate dehydrogenase YP_787666.1 3444868 D 360910 CDS YP_787667.1 187479642 6267283 complement(3445957..3447093) 1 NC_010645.1 rod shape-determining protein 3447093 mrdB 6267283 mrdB Bordetella avium 197N rod shape-determining protein YP_787667.1 3445957 R 360910 CDS YP_787668.1 187479643 6267386 complement(3447090..3448988) 1 NC_010645.1 penicillin-binding protein 3448988 mrdA 6267386 mrdA Bordetella avium 197N penicillin-binding protein YP_787668.1 3447090 R 360910 CDS YP_787669.1 187479644 6267385 complement(3449000..>3449506) 1 NC_010645.1 rod shape-determining protein >3449506 mreD 6267385 mreD Bordetella avium 197N rod shape-determining protein YP_787669.1 3449000 R 360910 CDS YP_787670.1 187479645 6267388 complement(3449541..3450425) 1 NC_010645.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3450425 mreC 6267388 mreC Bordetella avium 197N rod shape-determining protein MreC YP_787670.1 3449541 R 360910 CDS YP_787671.1 187479646 6267387 complement(3450510..3451553) 1 NC_010645.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3451553 envB 6267387 envB Bordetella avium 197N rod shape-determining protein MreB YP_787671.1 3450510 R 360910 CDS YP_787672.1 187479647 6266927 3451781..3452089 1 NC_010645.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 3452089 gatC 6266927 gatC Bordetella avium 197N aspartyl/glutamyl-tRNA amidotransferase subunit C YP_787672.1 3451781 D 360910 CDS YP_787673.1 187479648 6267056 3452093..3453625 1 NC_010645.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 3453625 gatA 6267056 gatA Bordetella avium 197N aspartyl/glutamyl-tRNA amidotransferase subunit A YP_787673.1 3452093 D 360910 CDS YP_787674.1 187479649 6267054 3453628..3455085 1 NC_010645.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 3455085 gatB 6267054 gatB Bordetella avium 197N aspartyl/glutamyl-tRNA amidotransferase subunit B YP_787674.1 3453628 D 360910 CDS YP_787675.1 187479650 6267055 complement(3455432..3456094) 1 NC_010645.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 3456094 pyrE 6267055 pyrE Bordetella avium 197N orotate phosphoribosyltransferase YP_787675.1 3455432 R 360910 CDS YP_787676.1 187479651 6267612 complement(3456193..3456975) 1 NC_010645.1 catabolite repression control protein 3456975 crc 6267612 crc Bordetella avium 197N catabolite repression control protein YP_787676.1 3456193 R 360910 CDS YP_787677.1 187479652 6266811 3457467..3458804 1 NC_010645.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 3458804 gdhA 6266811 gdhA Bordetella avium 197N glutamate dehydrogenase YP_787677.1 3457467 D 360910 CDS YP_787678.1 187479653 6267064 complement(3458856..3459428) 1 NC_010645.1 membrane protein 3459428 6267064 BAV3183 Bordetella avium 197N membrane protein YP_787678.1 3458856 R 360910 CDS YP_787679.1 187479654 6266421 3459622..3460476 1 NC_010645.1 universal stress protein 3460476 6266421 BAV3184 Bordetella avium 197N universal stress protein YP_787679.1 3459622 D 360910 CDS YP_787680.1 187479655 6266422 complement(3460478..>3461692) 1 NC_010645.1 muropeptide transporter >3461692 ampG 6266422 ampG Bordetella avium 197N muropeptide transporter YP_787680.1 3460478 R 360910 CDS YP_787681.1 187479656 6266626 complement(3461806..3462417) 1 NC_010645.1 methionine biosynthesis protein 3462417 metW 6266626 metW Bordetella avium 197N methionine biosynthesis protein YP_787681.1 3461806 R 360910 CDS YP_787682.1 187479657 6267345 complement(3462414..3463661) 1 NC_010645.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 3463661 metX 6267345 metX Bordetella avium 197N homoserine O-acetyltransferase YP_787682.1 3462414 R 360910 CDS YP_787683.1 187479658 6267346 <3464073..3465659 1 NC_010645.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 3465659 gshA 6267346 gshA Bordetella avium 197N glutamate--cysteine ligase YP_787683.1 <3464073 D 360910 CDS YP_787684.1 187479659 6267121 3465693..3466211 1 NC_010645.1 This CDS does not exhibit a typical prokaryotic lipoprotein signal peptide.; Also similar to BAV0354 (36.6 38d); hypothetical protein 3466211 6267121 BAV3189 Bordetella avium 197N hypothetical protein YP_787684.1 3465693 D 360910 CDS YP_787685.1 187479660 6266423 3466445..3467374 1 NC_010645.1 LysR family transcriptional regulator 3467374 6266423 BAV3190 Bordetella avium 197N LysR family transcriptional regulator YP_787685.1 3466445 D 360910 CDS YP_787686.1 187479661 6266424 <3467506..3468276 1 NC_010645.1 Partial CDS. Similar to the C-terminal region of many methyl-accepting chemotaxis proteins.; methyl-accepting chemotaxis protein (partial) 3468276 6266424 BAV3191 Bordetella avium 197N methyl-accepting chemotaxis protein (partial) YP_787686.1 <3467506 D 360910 CDS YP_787687.1 187479662 6267842 3468851..3469282 1 NC_010645.1 Truncated at N-terminus relative its orthologue in B. bronchiseptica.; cytochrome C 3469282 6267842 BAV3192 Bordetella avium 197N cytochrome C YP_787687.1 3468851 D 360910 CDS YP_787688.1 187479663 6266426 complement(3469342..3470850) 1 NC_010645.1 converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxy-acyl-CoA dehydrogenase 3470850 dcaH 6266426 dcaH Bordetella avium 197N 3-hydroxy-acyl-CoA dehydrogenase YP_787688.1 3469342 R 360910 CDS YP_787689.1 187479664 6266866 complement(3470886..3472112) 1 NC_010645.1 CoA-transferase 3472112 6266866 BAV3194 Bordetella avium 197N CoA-transferase YP_787689.1 3470886 R 360910 CDS YP_787690.1 187479665 6266427 complement(3472221..3473366) 1 NC_010645.1 acyl-CoA dehydrogenase 3473366 dcaA 6266427 dcaA Bordetella avium 197N acyl-CoA dehydrogenase YP_787690.1 3472221 R 360910 CDS YP_787691.1 187479666 6266864 complement(3473372..3474004) 1 NC_010645.1 TetR family transcriptional regulator 3474004 6266864 BAV3196 Bordetella avium 197N TetR family transcriptional regulator YP_787691.1 3473372 R 360910 CDS YP_787692.1 187479667 6266428 3474135..3475115 1 NC_010645.1 2-nitropropane dioxygenase 3475115 6266428 BAV3197 Bordetella avium 197N 2-nitropropane dioxygenase YP_787692.1 3474135 D 360910 CDS YP_787693.1 187479668 6266429 3475112..3475846 1 NC_010645.1 enoyl-CoA hydratase 3475846 dcaE 6266429 dcaE Bordetella avium 197N enoyl-CoA hydratase YP_787693.1 3475112 D 360910 CDS YP_787694.1 187479669 6266865 complement(3475855..3476670) 1 NC_010645.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3476670 6266865 BAV3199 Bordetella avium 197N enoyl-CoA hydratase YP_787694.1 3475855 R 360910 CDS YP_787695.1 187479670 6266430 3476749..3477630 1 NC_010645.1 hypothetical protein 3477630 6266430 BAV3200 Bordetella avium 197N hypothetical protein YP_787695.1 3476749 D 360910 CDS YP_787696.1 187479671 6266431 3477721..3477954 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 3477954 6266431 BAV3201 Bordetella avium 197N hypothetical protein YP_787696.1 3477721 D 360910 CDS YP_787697.1 187479672 6266432 3478213..3479838 1 NC_010645.1 ABC transporter substrate-binding protein 3479838 6266432 BAV3202 Bordetella avium 197N ABC transporter substrate-binding protein YP_787697.1 3478213 D 360910 CDS YP_787698.1 187479673 6266433 <3480129..3481106 1 NC_010645.1 ABC transporter permease 3481106 6266433 BAV3203 Bordetella avium 197N ABC transporter permease YP_787698.1 <3480129 D 360910 CDS YP_787699.1 187479674 6266434 3481115..3482035 1 NC_010645.1 ABC transporter permease 3482035 6266434 BAV3204 Bordetella avium 197N ABC transporter permease YP_787699.1 3481115 D 360910 CDS YP_787700.1 187479675 6266435 3482032..3483009 1 NC_010645.1 ABC transporter ATP-binding protein 3483009 6266435 BAV3205 Bordetella avium 197N ABC transporter ATP-binding protein YP_787700.1 3482032 D 360910 CDS YP_787701.1 187479676 6266436 3483006..3484016 1 NC_010645.1 ABC transporter ATP-binding protein 3484016 6266436 BAV3206 Bordetella avium 197N ABC transporter ATP-binding protein YP_787701.1 3483006 D 360910 CDS YP_787702.1 187479677 6266437 3484019..3484924 1 NC_010645.1 poly(aspartic acid) Hydrolase 3484924 6266437 BAV3207 Bordetella avium 197N poly(aspartic acid) Hydrolase YP_787702.1 3484019 D 360910 CDS YP_787703.1 187479678 6266438 3484950..3486080 1 NC_010645.1 amidohydrolase/peptidase 3486080 6266438 BAV3208 Bordetella avium 197N amidohydrolase/peptidase YP_787703.1 3484950 D 360910 CDS YP_787704.1 187479679 6266439 complement(3486379..3488433) 1 NC_010645.1 ATP-dependent DNA helicase 3488433 rep 6266439 rep Bordetella avium 197N ATP-dependent DNA helicase YP_787704.1 3486379 R 360910 CDS YP_787705.1 187479680 6267638 complement(3488486..3490534) 1 NC_010645.1 primosomal protein N' 3490534 priA 6267638 priA Bordetella avium 197N primosomal protein N' YP_787705.1 3488486 R 360910 CDS YP_787706.1 187479681 6267570 complement(3490861..>3491931) 1 NC_010645.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase >3491931 hemE 6267570 hemE Bordetella avium 197N uroporphyrinogen decarboxylase YP_787706.1 3490861 R 360910 CDS YP_787707.1 187479682 6267155 complement(3492008..3492808) 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 3492808 6267155 BAV3212 Bordetella avium 197N hypothetical protein YP_787707.1 3492008 R 360910 CDS YP_787708.1 187479683 6266440 complement(3492991..3493416) 1 NC_010645.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 3493416 atpC 6266440 atpC Bordetella avium 197N F0F1 ATP synthase subunit epsilon YP_787708.1 3492991 R 360910 CDS YP_787709.1 187479684 6266679 complement(3493426..3494826) 1 NC_010645.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 3494826 atpD 6266679 atpD Bordetella avium 197N F0F1 ATP synthase subunit beta YP_787709.1 3493426 R 360910 CDS YP_787710.1 187479685 6266680 complement(3494864..3495769) 1 NC_010645.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 3495769 atpG 6266680 atpG Bordetella avium 197N F0F1 ATP synthase subunit gamma YP_787710.1 3494864 R 360910 CDS YP_787711.1 187479686 6266683 complement(3495868..3497409) 1 NC_010645.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 3497409 atpA 6266683 atpA Bordetella avium 197N F0F1 ATP synthase subunit alpha YP_787711.1 3495868 R 360910 CDS YP_787712.1 187479687 6266677 complement(3497447..3497986) 1 NC_010645.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 3497986 atpH 6266677 atpH Bordetella avium 197N F0F1 ATP synthase subunit delta YP_787712.1 3497447 R 360910 CDS YP_787713.1 187479688 6266684 complement(3497999..>3498469) 1 NC_010645.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B >3498469 atpF 6266684 atpF Bordetella avium 197N F0F1 ATP synthase subunit B YP_787713.1 3497999 R 360910 CDS YP_787714.1 187479689 6266682 complement(3498599..3498841) 1 NC_010645.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 3498841 atpE 6266682 atpE Bordetella avium 197N F0F1 ATP synthase subunit C YP_787714.1 3498599 R 360910 CDS YP_787715.1 187479690 6266681 complement(3498957..3499838) 1 NC_010645.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 3499838 atpB 6266681 atpB Bordetella avium 197N F0F1 ATP synthase subunit A YP_787715.1 3498957 R 360910 CDS YP_787716.1 187479691 6266678 complement(3499905..3500249) 1 NC_010645.1 ATP synthase 3500249 atpI 6266678 atpI Bordetella avium 197N ATP synthase YP_787716.1 3499905 R 360910 CDS YP_787717.1 187479692 6266685 complement(3500708..3501484) 1 NC_010645.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3501484 6266685 BAV3222 Bordetella avium 197N enoyl-CoA hydratase YP_787717.1 3500708 R 360910 CDS YP_787718.1 187479693 6266441 3501521..3503284 1 NC_010645.1 signaling protein 3503284 6266441 BAV3223 Bordetella avium 197N signaling protein YP_787718.1 3501521 D 360910 CDS YP_787719.1 187479694 6266442 complement(3503294..3504181) 1 NC_010645.1 thioredoxin reductase 3504181 6266442 BAV3224 Bordetella avium 197N thioredoxin reductase YP_787719.1 3503294 R 360910 CDS YP_787720.1 187479695 6266443 3504303..3504662 1 NC_010645.1 dihydroneopterin aldolase 3504662 folB 6266443 folB Bordetella avium 197N dihydroneopterin aldolase YP_787720.1 3504303 D 360910 CDS YP_787721.1 187479696 6267025 3504665..3505612 1 NC_010645.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 3505612 6267025 BAV3226 Bordetella avium 197N C32 tRNA thiolase YP_787721.1 3504665 D 360910 CDS YP_787722.1 187479697 6266444 complement(3505605..3506342) 1 NC_010645.1 hypothetical protein 3506342 6266444 BAV3227 Bordetella avium 197N hypothetical protein YP_787722.1 3505605 R 360910 CDS YP_787723.1 187479698 6266445 complement(3506668..3507621) 1 NC_010645.1 D-isomer specific 2-hydroxyacid dehydrogenase 3507621 6266445 BAV3228 Bordetella avium 197N D-isomer specific 2-hydroxyacid dehydrogenase YP_787723.1 3506668 R 360910 CDS YP_787724.1 187479699 6266446 complement(3507657..3508490) 1 NC_010645.1 thiol:disulfide interchange protein 3508490 dsbC 6266446 dsbC Bordetella avium 197N thiol:disulfide interchange protein YP_787724.1 3507657 R 360910 CDS YP_787725.1 187479700 6266905 complement(3508517..3509680) 1 NC_010645.1 Also similar to BAV2773 (29.3 38d); ubiquinone biosynthesis hydroxylase family protein 3509680 visC 6266905 visC Bordetella avium 197N ubiquinone biosynthesis hydroxylase family protein YP_787725.1 3508517 R 360910 CDS YP_787726.1 187479701 6267928 complement(3509677..3510957) 1 NC_010645.1 membrane-bound lytic murein transglycosylase 3510957 mltA 6267928 mltA Bordetella avium 197N membrane-bound lytic murein transglycosylase YP_787726.1 3509677 R 360910 CDS YP_787727.1 187479702 6267358 complement(3510969..3511343) 1 NC_010645.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 3511343 apaG 6267358 apaG Bordetella avium 197N ApaG protein YP_787727.1 3510969 R 360910 CDS YP_787728.1 187479703 6266630 3511459..3512184 1 NC_010645.1 ribulose-phosphate 3-epimerase 3512184 cbbeP 6266630 cbbeP Bordetella avium 197N ribulose-phosphate 3-epimerase YP_787728.1 3511459 D 360910 CDS YP_787729.1 187479704 6266763 3512192..3512884 1 NC_010645.1 phosphoglycolate phosphatase 3512884 cbbzC 6266763 cbbzC Bordetella avium 197N phosphoglycolate phosphatase YP_787729.1 3512192 D 360910 CDS YP_787730.1 187479705 6266764 3513124..3514644 1 NC_010645.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 3514644 trpE 6266764 trpE Bordetella avium 197N anthranilate synthase component I YP_787730.1 3513124 D 360910 CDS YP_787731.1 187479706 6267896 complement(3514701..3515165) 1 NC_010645.1 hypothetical protein 3515165 6267896 BAV3236 Bordetella avium 197N hypothetical protein YP_787731.1 3514701 R 360910 CDS YP_787732.1 187479707 6266447 complement(3515172..3515435) 1 NC_010645.1 hypothetical protein 3515435 6266447 BAV3237 Bordetella avium 197N hypothetical protein YP_787732.1 3515172 R 360910 CDS YP_787733.1 187479708 6266448 complement(3515758..3516675) 1 NC_010645.1 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein 3516675 csiD 6266448 csiD Bordetella avium 197N hypothetical protein YP_787733.1 3515758 R 360910 CDS YP_787734.1 187479709 6266813 3516758..3517696 1 NC_010645.1 LysR family transcriptional regulator 3517696 6266813 BAV3239 Bordetella avium 197N LysR family transcriptional regulator YP_787734.1 3516758 D 360910 CDS YP_787735.1 187479710 6266449 complement(3517811..3518506) 1 NC_010645.1 GntR family transcriptional regulator 3518506 6266449 BAV3240 Bordetella avium 197N GntR family transcriptional regulator YP_787735.1 3517811 R 360910 CDS YP_787736.1 187479711 6266450 complement(3518607..3520367) 1 NC_010645.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 3520367 6266450 BAV3241 Bordetella avium 197N dihydroxy-acid dehydratase YP_787736.1 3518607 R 360910 CDS YP_787737.1 187479712 6266451 join(3520573..3520707,3520709..3520876) 1 NC_010645.1 Partial CDS. Similar to the C-terminal region of many transporters.; transporter (partial) 3520876 6266451 BAV3242 Bordetella avium 197N transporter (partial) YP_787737.1 3520573 D 360910 CDS YP_787738.1 187479713 6266452 complement(3521264..3522499) 1 NC_010645.1 transporter 3522499 6266452 BAV3243 Bordetella avium 197N transporter YP_787738.1 3521264 R 360910 CDS YP_787739.1 187479714 6266453 complement(3522509..3523417) 1 NC_010645.1 hypothetical protein 3523417 6266453 BAV3244 Bordetella avium 197N hypothetical protein YP_787739.1 3522509 R 360910 CDS YP_787740.1 187479715 6266454 complement(3523488..>3526133) 1 NC_010645.1 ; Also similar to BAV2768 (27.7 38d). Seems to be more similar to eukaryotic plasma membrane ATPase.; plasma membrane-type ATPase >3526133 6266454 BAV3245 Bordetella avium 197N plasma membrane-type ATPase YP_787740.1 3523488 R 360910 CDS YP_787741.1 187479716 6266455 3526407..3526640 1 NC_010645.1 hypothetical protein 3526640 6266455 BAV3246 Bordetella avium 197N hypothetical protein YP_787741.1 3526407 D 360910 CDS YP_787742.1 187479717 6266456 complement(3526799..3528178) 1 NC_010645.1 cytochrome C subunit of gluconate dehydrogenase 3528178 6266456 BAV3247 Bordetella avium 197N cytochrome C subunit of gluconate dehydrogenase YP_787742.1 3526799 R 360910 CDS YP_787743.1 187479718 6266457 complement(3528198..3529964) 1 NC_010645.1 gluconate dehydrogenase subunit 3529964 6266457 BAV3248 Bordetella avium 197N gluconate dehydrogenase subunit YP_787743.1 3528198 R 360910 CDS YP_787744.1 187479719 6266458 complement(3529981..3530736) 1 NC_010645.1 gluconate dehydrogenase subunit 3530736 6266458 BAV3249 Bordetella avium 197N gluconate dehydrogenase subunit YP_787744.1 3529981 R 360910 CDS YP_787745.1 187479720 6266459 complement(3531132..3531506) 1 NC_010645.1 hypothetical protein 3531506 6266459 BAV3250 Bordetella avium 197N hypothetical protein YP_787745.1 3531132 R 360910 CDS YP_787746.1 187479721 6266460 3531806..3531988 1 NC_010645.1 hypothetical protein 3531988 6266460 BAV3251 Bordetella avium 197N hypothetical protein YP_787746.1 3531806 D 360910 CDS YP_787747.1 187479722 6266461 <3532932..3533936 1 NC_010645.1 hypothetical protein 3533936 6266461 BAV3252 Bordetella avium 197N hypothetical protein YP_787747.1 <3532932 D 360910 CDS YP_787748.1 187479723 6266462 3534094..3535032 1 NC_010645.1 LysR family transcriptional regulator 3535032 6266462 BAV3253 Bordetella avium 197N LysR family transcriptional regulator YP_787748.1 3534094 D 360910 CDS YP_787749.1 187479724 6266463 complement(3535093..3536490) 1 NC_010645.1 Also similar to BAV0956 (29.2 38d); reductase flavoprotein subunit 3536490 6266463 BAV3254 Bordetella avium 197N reductase flavoprotein subunit YP_787749.1 3535093 R 360910 CDS YP_787750.1 187479725 6266464 complement(3536487..3537299) 1 NC_010645.1 racemase 3537299 6266464 BAV3255 Bordetella avium 197N racemase YP_787750.1 3536487 R 360910 CDS YP_787751.1 187479726 6266465 complement(3537325..3537933) 1 NC_010645.1 chorismatase hydrolase 3537933 6266465 BAV3256 Bordetella avium 197N chorismatase hydrolase YP_787751.1 3537325 R 360910 CDS YP_787752.1 187479727 6266466 complement(3537976..3538737) 1 NC_010645.1 N-acylmannosamine 1-dehydrogenase 3538737 6266466 BAV3257 Bordetella avium 197N N-acylmannosamine 1-dehydrogenase YP_787752.1 3537976 R 360910 CDS YP_787753.1 187479728 6266467 complement(3538820..3540265) 1 NC_010645.1 Similarity to kstd2 is limited to the C-terminus; dehydrogenase 3540265 6266467 BAV3258 Bordetella avium 197N dehydrogenase YP_787753.1 3538820 R 360910 CDS YP_787754.1 187479729 6266468 3540563..3541543 1 NC_010645.1 hypothetical protein 3541543 6266468 BAV3259 Bordetella avium 197N hypothetical protein YP_787754.1 3540563 D 360910 CDS YP_787755.1 187479730 6266469 <3541593..3543014 1 NC_010645.1 hypothetical protein 3543014 6266469 BAV3260 Bordetella avium 197N hypothetical protein YP_787755.1 <3541593 D 360910 CDS YP_787756.1 187479731 6266470 3543088..3544008 1 NC_010645.1 hypothetical protein 3544008 6266470 BAV3261 Bordetella avium 197N hypothetical protein YP_787756.1 3543088 D 360910 CDS YP_787757.1 187479732 6266471 complement(3544089..3545060) 1 NC_010645.1 electron transfer flavoprotein subunit alpha 3545060 6266471 BAV3262 Bordetella avium 197N electron transfer flavoprotein subunit alpha YP_787757.1 3544089 R 360910 CDS YP_787758.1 187479733 6266472 complement(3545057..3545848) 1 NC_010645.1 electron transfer flavoprotein subunit beta 3545848 6266472 BAV3263 Bordetella avium 197N electron transfer flavoprotein subunit beta YP_787758.1 3545057 R 360910 CDS YP_787759.1 187479734 6266473 <3546143..3547639 1 NC_010645.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 3547639 6266473 BAV3264 Bordetella avium 197N tricarballylate dehydrogenase YP_787759.1 <3546143 D 360910 CDS YP_787760.1 187479735 6266474 3547747..3548496 1 NC_010645.1 Also similar to BAV1364 (81.9); electron transfer flavoprotein subunit beta 3548496 etfB2 6266474 etfB2 Bordetella avium 197N electron transfer flavoprotein subunit beta YP_787760.1 3547747 D 360910 CDS YP_787761.1 187479736 6266937 3548517..3549449 1 NC_010645.1 Also similar to BAV1365 (75.4); electron transfer flavoprotein subunit alpha 3549449 etfA2 6266937 etfA2 Bordetella avium 197N electron transfer flavoprotein subunit alpha YP_787761.1 3548517 D 360910 CDS YP_787762.1 187479737 6266935 3549547..3550530 1 NC_010645.1 hypothetical protein 3550530 6266935 BAV3267 Bordetella avium 197N hypothetical protein YP_787762.1 3549547 D 360910 CDS YP_787763.1 187479738 6266475 3550533..3551393 1 NC_010645.1 carboxyvinyl-carboxyphosphonate phosphorylmutase 3551393 bcpA 6266475 bcpA Bordetella avium 197N carboxyvinyl-carboxyphosphonate phosphorylmutase YP_787763.1 3550533 D 360910 CDS YP_787764.1 187479739 6266689 3551896..3554583 1 NC_010645.1 autotransporter 3554583 6266689 BAV3269 Bordetella avium 197N autotransporter YP_787764.1 3551896 D 360910 CDS YP_787765.1 187479740 6266476 complement(3554692..3556524) 1 NC_010645.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 3556524 glmS 6266476 glmS Bordetella avium 197N glucosamine--fructose-6-phosphate aminotransferase YP_787765.1 3554692 R 360910 CDS YP_787766.1 187479741 6267077 3556673..3557161 1 NC_010645.1 AsnC/Lrp family transcriptional regulator 3557161 6267077 BAV3271 Bordetella avium 197N AsnC/Lrp family transcriptional regulator YP_787766.1 3556673 D 360910 CDS YP_787767.1 187479742 6266477 complement(3557162..3558217) 1 NC_010645.1 lipopolysaccharide core biosynthesis glycosyl transferase 3558217 6266477 BAV3272 Bordetella avium 197N lipopolysaccharide core biosynthesis glycosyl transferase YP_787767.1 3557162 R 360910 CDS YP_787768.1 187479743 6266478 complement(3558214..3559536) 1 NC_010645.1 UDP-glucose 6-dehydrogenase 3559536 rkpK 6266478 rkpK Bordetella avium 197N UDP-glucose 6-dehydrogenase YP_787768.1 3558214 R 360910 CDS YP_787769.1 187479744 6267663 complement(3559605..>3560975) 1 NC_010645.1 transporter >3560975 6267663 BAV3274 Bordetella avium 197N transporter YP_787769.1 3559605 R 360910 CDS YP_787770.1 187479745 6266479 complement(3560972..3562345) 1 NC_010645.1 bifunctional GlmU protein (includes UDP-N-acetylglucosamine pyrophosphorylase and glucosamine-1-phosphate n-acetyltransferase) 3562345 glmU 6266479 glmU Bordetella avium 197N bifunctional GlmU protein (includes UDP-N-acetylglucosamine pyrophosphorylase and glucosamine-1-phosphate n-acetyltransferase) YP_787770.1 3560972 R 360910 CDS YP_787771.1 187479746 6267078 complement(3562405..3563058) 1 NC_010645.1 regulatory protein 3563058 6267078 BAV3276 Bordetella avium 197N regulatory protein YP_787771.1 3562405 R 360910 CDS YP_787772.1 187479747 6266480 complement(3563055..3563180) 1 NC_010645.1 hypothetical protein 3563180 6266480 BAV3277 Bordetella avium 197N hypothetical protein YP_787772.1 3563055 R 360910 CDS YP_787773.1 187479748 6266481 3563288..3563503 1 NC_010645.1 hypothetical protein 3563503 6266481 BAV3278 Bordetella avium 197N hypothetical protein YP_787773.1 3563288 D 360910 CDS YP_787774.1 187479749 6266482 complement(3563514..3564122) 1 NC_010645.1 electron transport protein 3564122 6266482 BAV3279 Bordetella avium 197N electron transport protein YP_787774.1 3563514 R 360910 CDS YP_787775.1 187479750 6266483 complement(3564147..3565043) 1 NC_010645.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 3565043 cyoE 6266483 cyoE Bordetella avium 197N protoheme IX farnesyltransferase YP_787775.1 3564147 R 360910 CDS YP_787776.1 187479751 6266838 complement(3565072..3566085) 1 NC_010645.1 cytochrome oxidase assembly protein 3566085 6266838 BAV3281 Bordetella avium 197N cytochrome oxidase assembly protein YP_787776.1 3565072 R 360910 CDS YP_787777.1 187479752 6266484 3566428..3567243 1 NC_010645.1 NUDIX hydrolase 3567243 6266484 BAV3282 Bordetella avium 197N NUDIX hydrolase YP_787777.1 3566428 D 360910 CDS YP_787778.1 187479753 6266485 complement(3567250..3569841) 1 NC_010645.1 sodium/hydrogen antiporter 3569841 6266485 BAV3283 Bordetella avium 197N sodium/hydrogen antiporter YP_787778.1 3567250 R 360910 CDS YP_787779.1 187479754 6266486 3570019..3570831 1 NC_010645.1 cAMP phosphodiesterase 3570831 cpdA 6266486 cpdA Bordetella avium 197N cAMP phosphodiesterase YP_787779.1 3570019 D 360910 CDS YP_787780.1 187479755 6266806 complement(3571171..3572094) 1 NC_010645.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 3572094 fam 6266806 fam Bordetella avium 197N RNA polymerase factor sigma-32 YP_787780.1 3571171 R 360910 CDS YP_787781.1 187479756 6266952 complement(3572196..3572663) 1 NC_010645.1 hypothetical protein 3572663 6266952 BAV3286 Bordetella avium 197N hypothetical protein YP_787781.1 3572196 R 360910 CDS YP_787782.1 187479757 6266487 complement(3572764..>3573453) 1 NC_010645.1 membrane protein >3573453 6266487 BAV3287 Bordetella avium 197N membrane protein YP_787782.1 3572764 R 360910 CDS YP_787783.1 187479758 6266488 complement(3573512..3574351) 1 NC_010645.1 esterase 3574351 6266488 BAV3288 Bordetella avium 197N esterase YP_787783.1 3573512 R 360910 CDS YP_787784.1 187479759 6266489 complement(3574353..3575459) 1 NC_010645.1 deleted EC_number 1.2.1.1; glutathione-dependent formaldehyde dehydrogenase 3575459 adhC 6266489 adhC Bordetella avium 197N glutathione-dependent formaldehyde dehydrogenase YP_787784.1 3574353 R 360910 CDS YP_787785.1 187479760 6266602 3575633..3576358 1 NC_010645.1 hypothetical protein 3576358 6266602 BAV3290 Bordetella avium 197N hypothetical protein YP_787785.1 3575633 D 360910 CDS YP_787786.1 187479761 6266490 3576700..3581439 1 NC_010645.1 glutamate synthase [NADPH] large chain 3581439 aspB 6266490 aspB Bordetella avium 197N glutamate synthase [NADPH] large chain YP_787786.1 3576700 D 360910 CDS YP_787787.1 187479762 6266670 3581448..3582914 1 NC_010645.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3582914 gltD 6266670 gltD Bordetella avium 197N glutamate synthase subunit beta YP_787787.1 3581448 D 360910 CDS YP_787788.1 187479763 6266671 3583076..3584842 1 NC_010645.1 hydantoin utilization protein B 3584842 hyuB 6266671 hyuB Bordetella avium 197N hydantoin utilization protein B YP_787788.1 3583076 D 360910 CDS YP_787789.1 187479764 6267228 3584853..3586937 1 NC_010645.1 hydantoin hydantoinase A 3586937 hyuA 6267228 hyuA Bordetella avium 197N hydantoin hydantoinase A YP_787789.1 3584853 D 360910 CDS YP_787790.1 187479765 6267226 3586987..3587943 1 NC_010645.1 AraC family transcriptional regulator 3587943 6267226 BAV3295 Bordetella avium 197N AraC family transcriptional regulator YP_787790.1 3586987 D 360910 CDS YP_787791.1 187479766 6266491 complement(3587944..3589260) 1 NC_010645.1 permease 3589260 6266491 BAV3296 Bordetella avium 197N permease YP_787791.1 3587944 R 360910 CDS YP_787792.1 187479767 6266492 complement(3589447..3590439) 1 NC_010645.1 Also similar to BAV3097 (36.8 38d); urea amidolyase-like protein 3590439 6266492 BAV3297 Bordetella avium 197N urea amidolyase-like protein YP_787792.1 3589447 R 360910 CDS YP_787793.1 187479768 6266493 complement(3590429..3591304) 1 NC_010645.1 Also similar to BAV3096 (28.6 38d).; hypothetical protein 3591304 6266493 BAV3298 Bordetella avium 197N hypothetical protein YP_787793.1 3590429 R 360910 CDS YP_787794.1 187479769 6266494 complement(3591301..3592689) 1 NC_010645.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3592689 accC 6266494 accC Bordetella avium 197N acetyl-CoA carboxylase biotin carboxylase subunit YP_787794.1 3591301 R 360910 CDS YP_787795.1 187479770 6266577 complement(3592693..3592935) 1 NC_010645.1 Similarity to orthologues limited to C-terminal 73 aa; hypothetical protein 3592935 accB 6266577 accB Bordetella avium 197N hypothetical protein YP_787795.1 3592693 R 360910 CDS YP_787796.1 187479771 6266575 complement(3592974..3593750) 1 NC_010645.1 Similar to the N-terminal 120 aa of Emericella nidulans lactam utilization protein LamB SWALL:LAMB_EMENI (SWALL:P38096) (262 aa).; hypothetical protein 3593750 6266575 BAV3301 Bordetella avium 197N hypothetical protein YP_787796.1 3592974 R 360910 CDS YP_787797.1 187479772 6266495 3594008..3594907 1 NC_010645.1 LysR family transcriptional regulator 3594907 6266495 BAV3302 Bordetella avium 197N LysR family transcriptional regulator YP_787797.1 3594008 D 360910 CDS YP_787798.1 187479773 6266496 3595033..3595668 1 NC_010645.1 outer membrane protein 3595668 ompW 6266496 ompW Bordetella avium 197N outer membrane protein YP_787798.1 3595033 D 360910 CDS YP_787799.1 187479774 6267461 3596048..3596884 1 NC_010645.1 ABC transporter ATP-binding protein 3596884 6267461 BAV3304 Bordetella avium 197N ABC transporter ATP-binding protein YP_787799.1 3596048 D 360910 CDS YP_787800.1 187479775 6266497 3596881..3597669 1 NC_010645.1 membrane protein 3597669 6266497 BAV3305 Bordetella avium 197N membrane protein YP_787800.1 3596881 D 360910 CDS YP_787801.1 187479776 6266498 3597682..3598170 1 NC_010645.1 virulence protein transporter 3598170 vpsC 6266498 vpsC Bordetella avium 197N virulence protein transporter YP_787801.1 3597682 D 360910 CDS YP_787802.1 187479777 6267929 3598243..3599025 1 NC_010645.1 intercellular spreading lipoprotein 3599025 vacJ 6267929 vacJ Bordetella avium 197N intercellular spreading lipoprotein YP_787802.1 3598243 D 360910 CDS YP_787803.1 187479778 6267925 3599056..3599682 1 NC_010645.1 hypothetical protein 3599682 6267925 BAV3308 Bordetella avium 197N hypothetical protein YP_787803.1 3599056 D 360910 CDS YP_787804.1 187479779 6266499 3599814..3600623 1 NC_010645.1 ABC transporter ATP-binding protein 3600623 6266499 BAV3309 Bordetella avium 197N ABC transporter ATP-binding protein YP_787804.1 3599814 D 360910 CDS YP_787805.1 187479780 6266500 <3600620..3601417 1 NC_010645.1 ABC transporter permease 3601417 6266500 BAV3310 Bordetella avium 197N ABC transporter permease YP_787805.1 <3600620 D 360910 CDS YP_787806.1 187479781 6266501 3601421..3601666 1 NC_010645.1 Also similar to BAV1074 (37.6 38d).; BolA-like protein 3601666 6266501 BAV3311 Bordetella avium 197N BolA-like protein YP_787806.1 3601421 D 360910 CDS YP_787807.1 187479782 6266502 3601666..3602931 1 NC_010645.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3602931 murA 6266502 murA Bordetella avium 197N UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_787807.1 3601666 D 360910 CDS YP_787808.1 187479783 6267399 3602928..3603611 1 NC_010645.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 3603611 hisG 6267399 hisG Bordetella avium 197N ATP phosphoribosyltransferase catalytic subunit YP_787808.1 3602928 D 360910 CDS YP_787809.1 187479784 6267177 3603621..3604928 1 NC_010645.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 3604928 hisD 6267177 hisD Bordetella avium 197N histidinol dehydrogenase YP_787809.1 3603621 D 360910 CDS YP_787810.1 187479785 6267174 3604925..3606016 1 NC_010645.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 3606016 hisC3 6267174 hisC3 Bordetella avium 197N histidinol-phosphate aminotransferase YP_787810.1 3604925 D 360910 CDS YP_787811.1 187479786 6267173 3606018..3606605 1 NC_010645.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 3606605 hisB 6267173 hisB Bordetella avium 197N imidazoleglycerol-phosphate dehydratase YP_787811.1 3606018 D 360910 CDS YP_787812.1 187479787 6267170 3606622..3607308 1 NC_010645.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 3607308 hisH 6267170 hisH Bordetella avium 197N imidazole glycerol phosphate synthase subunit HisH YP_787812.1 3606622 D 360910 CDS YP_787813.1 187479788 6267178 3607372..3608112 1 NC_010645.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 3608112 hisA 6267178 hisA Bordetella avium 197N 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_787813.1 3607372 D 360910 CDS YP_787814.1 187479789 6267169 3608109..3608912 1 NC_010645.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 3608912 hisF 6267169 hisF Bordetella avium 197N imidazole glycerol phosphate synthase subunit HisF YP_787814.1 3608109 D 360910 CDS YP_787815.1 187479790 6267176 3608915..3609319 1 NC_010645.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 3609319 hisI 6267176 hisI Bordetella avium 197N phosphoribosyl-AMP cyclohydrolase YP_787815.1 3608915 D 360910 CDS YP_787816.1 187479791 6267179 3609316..3609666 1 NC_010645.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 3609666 hisE 6267179 hisE Bordetella avium 197N phosphoribosyl-ATP pyrophosphatase YP_787816.1 3609316 D 360910 CDS YP_787817.1 187479792 6267175 3609675..3610043 1 NC_010645.1 hypothetical protein 3610043 6267175 BAV3322 Bordetella avium 197N hypothetical protein YP_787817.1 3609675 D 360910 CDS YP_787818.1 187479793 6266503 3610059..3610274 1 NC_010645.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 3610274 tatA 6266503 tatA Bordetella avium 197N twin arginine translocase protein A YP_787818.1 3610059 D 360910 CDS YP_787819.1 187479794 6267789 3610326..3610823 1 NC_010645.1 Sec-independent protein translocase protein TatB 3610823 tatB 6267789 tatB Bordetella avium 197N Sec-independent protein translocase protein TatB YP_787819.1 3610326 D 360910 CDS YP_787820.1 187479795 6267790 <3610820..3611605 1 NC_010645.1 Sec-independent protein translocase protein TatC 3611605 tatC 6267790 tatC Bordetella avium 197N Sec-independent protein translocase protein TatC YP_787820.1 <3610820 D 360910 CDS YP_787821.1 187479796 6267791 complement(3611633..3612691) 1 NC_010645.1 protease 3612691 degQ 6267791 degQ Bordetella avium 197N protease YP_787821.1 3611633 R 360910 CDS YP_787822.1 187479797 6266877 3612783..3613559 1 NC_010645.1 hypothetical protein 3613559 6266877 BAV3327 Bordetella avium 197N hypothetical protein YP_787822.1 3612783 D 360910 CDS YP_787823.1 187479798 6266504 complement(3613573..3614019) 1 NC_010645.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3614019 mscL 6266504 mscL Bordetella avium 197N large-conductance mechanosensitive channel YP_787823.1 3613573 R 360910 CDS YP_787824.1 187479799 6267391 3614161..3614802 1 NC_010645.1 ubiquinol-cytochrome C reductase iron-sulfur subunit 3614802 petA 6267391 petA Bordetella avium 197N ubiquinol-cytochrome C reductase iron-sulfur subunit YP_787824.1 3614161 D 360910 CDS YP_787825.1 187479800 6267503 3614853..3616256 1 NC_010645.1 cytochrome B 3616256 petB 6267503 petB Bordetella avium 197N cytochrome B YP_787825.1 3614853 D 360910 CDS YP_787826.1 187479801 6267504 3616253..3617083 1 NC_010645.1 cytochrome C 3617083 petC 6267504 petC Bordetella avium 197N cytochrome C YP_787826.1 3616253 D 360910 CDS YP_787827.1 187479802 6267505 3617231..3617842 1 NC_010645.1 stringent starvation protein 3617842 ssp 6267505 ssp Bordetella avium 197N stringent starvation protein YP_787827.1 3617231 D 360910 CDS YP_787828.1 187479803 6267773 3617851..3618288 1 NC_010645.1 ClpXP protease specificity-enhancing factor 3618288 sspB 6267773 sspB Bordetella avium 197N ClpXP protease specificity-enhancing factor YP_787828.1 3617851 D 360910 CDS YP_787829.1 187479804 6267886 3618576..3618911 1 NC_010645.1 membrane protein 3618911 6267886 BAV3334 Bordetella avium 197N membrane protein YP_787829.1 3618576 D 360910 CDS YP_787830.1 187479805 6267846 3619351..3620727 1 NC_010645.1 membrane protein 3620727 6267846 BAV3335 Bordetella avium 197N membrane protein YP_787830.1 3619351 D 360910 CDS YP_787831.1 187479806 6266506 3620720..3622114 1 NC_010645.1 hypothetical protein 3622114 6266506 BAV3336 Bordetella avium 197N hypothetical protein YP_787831.1 3620720 D 360910 CDS YP_787832.1 187479807 6266507 3622348..3623952 1 NC_010645.1 ABC transporter substrate-binding protein 3623952 6266507 BAV3337 Bordetella avium 197N ABC transporter substrate-binding protein YP_787832.1 3622348 D 360910 CDS YP_787833.1 187479808 6266508 3624035..3625006 1 NC_010645.1 ABC transporter permease 3625006 6266508 BAV3338 Bordetella avium 197N ABC transporter permease YP_787833.1 3624035 D 360910 CDS YP_787834.1 187479809 6266509 3625015..3625941 1 NC_010645.1 ABC transporter permease 3625941 6266509 BAV3339 Bordetella avium 197N ABC transporter permease YP_787834.1 3625015 D 360910 CDS YP_787835.1 187479810 6266510 3625951..3627681 1 NC_010645.1 ABC transporter ATP-binding protein 3627681 6266510 BAV3340 Bordetella avium 197N ABC transporter ATP-binding protein YP_787835.1 3625951 D 360910 CDS YP_787836.1 187479811 6266511 complement(3627687..>3628460) 1 NC_010645.1 membrane protein >3628460 6266511 BAV3341 Bordetella avium 197N membrane protein YP_787836.1 3627687 R 360910 CDS YP_787837.1 187479812 6266512 complement(3628519..3629133) 1 NC_010645.1 lipoprotein 3629133 6266512 BAV3342 Bordetella avium 197N lipoprotein YP_787837.1 3628519 R 360910 CDS YP_787838.1 187479813 6266513 3629392..3630825 1 NC_010645.1 ATP-dependent RNA helicase 3630825 rhlE 6266513 rhlE Bordetella avium 197N ATP-dependent RNA helicase YP_787838.1 3629392 D 360910 CDS YP_787839.1 187479814 6267650 3630847..3631476 1 NC_010645.1 amino acid efflux protein 3631476 6267650 BAV3344 Bordetella avium 197N amino acid efflux protein YP_787839.1 3630847 D 360910 CDS YP_787840.1 187479815 6266514 3631502..3633109 1 NC_010645.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 3633109 prfC 6266514 prfC Bordetella avium 197N peptide chain release factor 3 YP_787840.1 3631502 D 360910 CDS YP_787841.1 187479816 6267352 3633146..3633811 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 3633811 6267352 BAV3346 Bordetella avium 197N hypothetical protein YP_787841.1 3633146 D 360910 CDS YP_787842.1 187479817 6266515 complement(3633884..3634360) 1 NC_010645.1 bacterioferritin 3634360 bfr 6266515 bfr Bordetella avium 197N bacterioferritin YP_787842.1 3633884 R 360910 CDS YP_787843.1 187479818 6266705 3634868..3635164 1 NC_010645.1 bacterioferritin-associated ferredoxin 3635164 bfd 6266705 bfd Bordetella avium 197N bacterioferritin-associated ferredoxin YP_787843.1 3634868 D 360910 CDS YP_787844.1 187479819 6266701 complement(3635225..3636646) 1 NC_010645.1 RNA polymerase sigma-54 factor 3636646 glnF 6266701 glnF Bordetella avium 197N RNA polymerase sigma-54 factor YP_787844.1 3635225 R 360910 CDS YP_787845.1 187479820 6267083 3636645..3637280 1 NC_010645.1 . Seems to be unique to the bordetellae.; membrane protein 3637280 6267083 BAV3350 Bordetella avium 197N membrane protein YP_787845.1 3636645 D 360910 CDS YP_787846.1 187479821 6266516 3637637..3639346 1 NC_010645.1 Also similar to BAV1174 (55.3 38d.).; 2-isopropylmalate synthase 3639346 leuA2 6266516 leuA2 Bordetella avium 197N 2-isopropylmalate synthase YP_787846.1 3637637 D 360910 CDS YP_787847.1 187479822 6267287 complement(3639426..3640715) 1 NC_010645.1 amidase 3640715 6267287 BAV3352 Bordetella avium 197N amidase YP_787847.1 3639426 R 360910 CDS YP_787848.1 187479823 6266517 3640928..3641962 1 NC_010645.1 LacI family transcriptional regulator 3641962 6266517 BAV3353 Bordetella avium 197N LacI family transcriptional regulator YP_787848.1 3640928 D 360910 CDS YP_787849.1 187479824 6266518 3641983..3642981 1 NC_010645.1 ABC transporter substrate-binding protein 3642981 6266518 BAV3354 Bordetella avium 197N ABC transporter substrate-binding protein YP_787849.1 3641983 D 360910 CDS YP_787850.1 187479825 6266519 3642981..3643790 1 NC_010645.1 ABC transporter permease 3643790 6266519 BAV3355 Bordetella avium 197N ABC transporter permease YP_787850.1 3642981 D 360910 CDS YP_787851.1 187479826 6266520 3643792..3644586 1 NC_010645.1 ABC transporter permease 3644586 6266520 BAV3356 Bordetella avium 197N ABC transporter permease YP_787851.1 3643792 D 360910 CDS YP_787852.1 187479827 6266521 3644583..3645569 1 NC_010645.1 ABC transporter ATP-binding protein 3645569 6266521 BAV3357 Bordetella avium 197N ABC transporter ATP-binding protein YP_787852.1 3644583 D 360910 CDS YP_787853.1 187479828 6266522 3645586..3646401 1 NC_010645.1 phosphohydrolase 3646401 6266522 BAV3358 Bordetella avium 197N phosphohydrolase YP_787853.1 3645586 D 360910 CDS YP_787854.1 187479829 6266523 complement(3646576..3646893) 1 NC_010645.1 . Seems to be unique to the bordetellae.; hypothetical protein 3646893 6266523 BAV3359 Bordetella avium 197N hypothetical protein YP_787854.1 3646576 R 360910 CDS YP_787855.1 187479830 6266524 complement(3646976..3647317) 1 NC_010645.1 hypothetical protein 3647317 6266524 BAV3360 Bordetella avium 197N hypothetical protein YP_787855.1 3646976 R 360910 CDS YP_787856.1 187479831 6266525 3647501..3649186 1 NC_010645.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 3649186 argS 6266525 argS Bordetella avium 197N arginyl-tRNA synthetase YP_787856.1 3647501 D 360910 CDS YP_787857.1 187479832 6266652 3649195..3649878 1 NC_010645.1 hypothetical protein 3649878 6266652 BAV3362 Bordetella avium 197N hypothetical protein YP_787857.1 3649195 D 360910 CDS YP_787858.1 187479833 6266526 3649940..3650569 1 NC_010645.1 thiol:disulfide interchange protein 3650569 dsbA 6266526 dsbA Bordetella avium 197N thiol:disulfide interchange protein YP_787858.1 3649940 D 360910 CDS YP_787859.1 187479834 6266903 3650673..3652235 1 NC_010645.1 signaling protein 3652235 rtn 6266903 rtn Bordetella avium 197N signaling protein YP_787859.1 3650673 D 360910 CDS YP_787860.1 187479835 6267735 complement(3652240..3653430) 1 NC_010645.1 Previously sequenced as Bordetella avium cystathionine beta-lyase metC SWALL:METC_BORAV (SWALL:Q07703) (395 aa).; cystathionine beta-lyase 3653430 metC 6267735 metC Bordetella avium 197N cystathionine beta-lyase YP_787860.1 3652240 R 360910 CDS YP_787861.1 187479836 6267334 3653572..3654198 1 NC_010645.1 amino acid efflux protein 3654198 6267334 BAV3366 Bordetella avium 197N amino acid efflux protein YP_787861.1 3653572 D 360910 CDS YP_787862.1 187479837 6266527 complement(3654222..3655283) 1 NC_010645.1 metallo-beta-lactamase family protein 3655283 6266527 BAV3367 Bordetella avium 197N metallo-beta-lactamase family protein YP_787862.1 3654222 R 360910 CDS YP_787863.1 187479838 6266528 3655356..3655736 1 NC_010645.1 MerR family transcriptional regulator 3655736 6266528 BAV3368 Bordetella avium 197N MerR family transcriptional regulator YP_787863.1 3655356 D 360910 CDS YP_787864.1 187479839 6266529 3655855..3657033 1 NC_010645.1 isovaleryl-CoA dehydrogenase 3657033 ivd 6266529 ivd Bordetella avium 197N isovaleryl-CoA dehydrogenase YP_787864.1 3655855 D 360910 CDS YP_787865.1 187479840 6267259 3657150..3658331 1 NC_010645.1 acetyl-CoA acetyltransferase 3658331 6267259 BAV3370 Bordetella avium 197N acetyl-CoA acetyltransferase YP_787865.1 3657150 D 360910 CDS YP_787866.1 187479841 6266530 3658421..3660028 1 NC_010645.1 methylcrotonyl-CoA carboxylase beta chain 3660028 6266530 BAV3371 Bordetella avium 197N methylcrotonyl-CoA carboxylase beta chain YP_787866.1 3658421 D 360910 CDS YP_787867.1 187479842 6266531 <3660054..3662060 1 NC_010645.1 methylcrotonyl-CoA carboxylase subunit alpha 3662060 6266531 BAV3372 Bordetella avium 197N methylcrotonyl-CoA carboxylase subunit alpha YP_787867.1 <3660054 D 360910 CDS YP_787868.1 187479843 6266532 complement(3662107..3662352) 1 NC_010645.1 hypothetical protein 3662352 6266532 BAV3373 Bordetella avium 197N hypothetical protein YP_787868.1 3662107 R 360910 CDS YP_787869.1 187479844 6266533 complement(3662412..3663602) 1 NC_010645.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein 3663602 argD 6266533 argD Bordetella avium 197N acetylornithine transaminase protein YP_787869.1 3662412 R 360910 CDS YP_787870.1 187479845 6266651 complement(3663721..3664734) 1 NC_010645.1 low-specificity D-threonine aldolase 3664734 6266651 BAV3375 Bordetella avium 197N low-specificity D-threonine aldolase YP_787870.1 3663721 R 360910 CDS YP_787871.1 187479846 6266534 3665195..3667429 1 NC_010645.1 TonB-dependent heme receptor 3667429 hemC 6266534 hemC Bordetella avium 197N TonB-dependent heme receptor YP_787871.1 3665195 D 360910 CDS YP_787872.1 187479847 6267153 3667576..3668034 1 NC_010645.1 hypothetical protein 3668034 6267153 BAV3377 Bordetella avium 197N hypothetical protein YP_787872.1 3667576 D 360910 CDS YP_787873.1 187479848 6266535 3668084..3668959 1 NC_010645.1 Also similar to BAV2977 (34.9 38d); glutamyl-tRNA synthetase 3668959 6266535 BAV3378 Bordetella avium 197N glutamyl-tRNA synthetase YP_787873.1 3668084 D 360910 CDS YP_787874.1 187479849 6266536 complement(3668956..3671514) 1 NC_010645.1 membrane protein 3671514 6266536 BAV3379 Bordetella avium 197N membrane protein YP_787874.1 3668956 R 360910 CDS YP_787875.1 187479850 6266537 3671578..3674214 1 NC_010645.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 3674214 topB 6266537 topB Bordetella avium 197N DNA topoisomerase III YP_787875.1 3671578 D 360910 CDS YP_787876.1 187479851 6267821 3674349..3675398 1 NC_010645.1 ABC transporter substrate-binding protein 3675398 6267821 BAV3381 Bordetella avium 197N ABC transporter substrate-binding protein YP_787876.1 3674349 D 360910 CDS YP_787877.1 187479852 6266538 3675395..3676168 1 NC_010645.1 ABC transporter ATP-binding protein 3676168 6266538 BAV3382 Bordetella avium 197N ABC transporter ATP-binding protein YP_787877.1 3675395 D 360910 CDS YP_787878.1 187479853 6266539 3676180..3677034 1 NC_010645.1 ABC transporter permease 3677034 6266539 BAV3383 Bordetella avium 197N ABC transporter permease YP_787878.1 3676180 D 360910 CDS YP_787879.1 187479854 6266540 3677034..3677834 1 NC_010645.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 3677834 idnO 6266540 idnO Bordetella avium 197N gluconate 5-dehydrogenase YP_787879.1 3677034 D 360910 CDS YP_787880.1 187479855 6266541 3679297..3680055 1 NC_010645.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 3680055 fabG 6266541 fabG Bordetella avium 197N 3-ketoacyl-(acyl-carrier-protein) reductase YP_787880.1 3679297 D 360910 CDS YP_787881.1 187479856 6266542 complement(3680065..3681879) 1 NC_010645.1 Also similar to BAV2673 (46.528 38d); acetolactate synthase isozyme III large subunit 3681879 ilvI2 6266542 ilvI2 Bordetella avium 197N acetolactate synthase isozyme III large subunit YP_787881.1 3680065 R 360910 CDS YP_787882.1 187479857 6267242 3681973..3682455 1 NC_010645.1 AsnC/Lrp family transcriptional regulator 3682455 6267242 BAV3388 Bordetella avium 197N AsnC/Lrp family transcriptional regulator YP_787882.1 3681973 D 360910 CDS YP_787883.1 187479858 6266543 complement(3682440..3683366) 1 NC_010645.1 membrane protein 3683366 6266543 BAV3389 Bordetella avium 197N membrane protein YP_787883.1 3682440 R 360910 CDS YP_787884.1 187479859 6266544 3683496..3684008 1 NC_010645.1 hypothetical protein 3684008 6266544 BAV3390 Bordetella avium 197N hypothetical protein YP_787884.1 3683496 D 360910 CDS YP_787885.1 187479860 6267963 3684351..3685037 1 NC_010645.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3685037 ribB 6267963 ribB Bordetella avium 197N 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_787885.1 3684351 D 360910 CDS YP_787886.1 187479861 6267220 complement(3685048..3685539) 1 NC_010645.1 nucleoside 2-deoxyribosyltransferase 3685539 6267220 BAV3392 Bordetella avium 197N nucleoside 2-deoxyribosyltransferase YP_787886.1 3685048 R 360910 CDS YP_787887.1 187479862 6266546 complement(3685554..3686009) 1 NC_010645.1 hypothetical protein 3686009 6266546 BAV3393 Bordetella avium 197N hypothetical protein YP_787887.1 3685554 R 360910 CDS YP_787888.1 187479863 6266547 complement(3686104..3687024) 1 NC_010645.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 3687024 6266547 BAV3394 Bordetella avium 197N 2-dehydropantoate 2-reductase YP_787888.1 3686104 R 360910 CDS YP_787889.1 187479864 6266548 3687396..3688409 1 NC_010645.1 ABC transporter substrate-binding protein 3688409 6266548 BAV3395 Bordetella avium 197N ABC transporter substrate-binding protein YP_787889.1 3687396 D 360910 CDS YP_787890.1 187479865 6266549 3688406..3689935 1 NC_010645.1 ABC transporter ATP-binding protein 3689935 6266549 BAV3396 Bordetella avium 197N ABC transporter ATP-binding protein YP_787890.1 3688406 D 360910 CDS YP_787891.1 187479866 6266550 3689932..3691005 1 NC_010645.1 ABC transporter permease 3691005 6266550 BAV3397 Bordetella avium 197N ABC transporter permease YP_787891.1 3689932 D 360910 CDS YP_787892.1 187479867 6266551 3691016..3691960 1 NC_010645.1 ABC transporter permease 3691960 6266551 BAV3398 Bordetella avium 197N ABC transporter permease YP_787892.1 3691016 D 360910 CDS YP_787893.1 187479868 6266552 3691976..3693253 1 NC_010645.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3693253 codA 6266552 codA Bordetella avium 197N cytosine deaminase YP_787893.1 3691976 D 360910 CDS YP_787894.1 187479869 6266801 complement(3693288..3694127) 1 NC_010645.1 AraC family transcriptional regulator 3694127 6266801 BAV3400 Bordetella avium 197N AraC family transcriptional regulator YP_787894.1 3693288 R 360910 CDS YP_787895.1 187479870 6266553 complement(3694199..3695362) 1 NC_010645.1 L-lactate dehydrogenase 3695362 lctD 6266553 lctD Bordetella avium 197N L-lactate dehydrogenase YP_787895.1 3694199 R 360910 CDS YP_787896.1 187479871 6267281 3695537..3695821 1 NC_010645.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 3695821 6267281 BAV3402 Bordetella avium 197N acylphosphatase YP_787896.1 3695537 D 360910 CDS YP_787897.1 187479872 6266554 complement(3696024..3697334) 1 NC_010645.1 dehydrogenase, cytochrome C subunit 3697334 6266554 BAV3403 Bordetella avium 197N dehydrogenase, cytochrome C subunit YP_787897.1 3696024 R 360910 CDS YP_787898.1 187479873 6266555 complement(3697331..3697876) 1 NC_010645.1 dehydrogenase, iron-sulfur binding subunit 3697876 6266555 BAV3404 Bordetella avium 197N dehydrogenase, iron-sulfur binding subunit YP_787898.1 3697331 R 360910 CDS YP_787899.1 187479874 6266556 complement(3697873..>3700707) 1 NC_010645.1 dehydrogenase, molybdenum binding subunit >3700707 6266556 BAV3405 Bordetella avium 197N dehydrogenase, molybdenum binding subunit YP_787899.1 3697873 R 360910 CDS YP_787900.1 187479875 6266557 complement(3701011..3701619) 1 NC_010645.1 hypothetical protein 3701619 6266557 BAV3406 Bordetella avium 197N hypothetical protein YP_787900.1 3701011 R 360910 CDS YP_787901.1 187479876 6266558 3701696..3702685 1 NC_010645.1 hypothetical protein 3702685 6266558 BAV3407 Bordetella avium 197N hypothetical protein YP_787901.1 3701696 D 360910 CDS YP_787902.1 187479877 6266559 complement(3702854..3704080) 1 NC_010645.1 hypothetical protein 3704080 rtcB 6266559 rtcB Bordetella avium 197N hypothetical protein YP_787902.1 3702854 R 360910 CDS YP_787903.1 187479878 6267732 3704368..3705972 1 NC_010645.1 transcriptional regulator 3705972 rtcR 6267732 rtcR Bordetella avium 197N transcriptional regulator YP_787903.1 3704368 D 360910 CDS YP_787904.1 187479879 6267733 complement(3706184..3708637) 1 NC_010645.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 3708637 gyrB 6267733 gyrB Bordetella avium 197N DNA gyrase subunit B YP_787904.1 3706184 R 360910 CDS YP_787905.1 187479880 6267141 complement(3708720..3709835) 1 NC_010645.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 3709835 dnaN 6267141 dnaN Bordetella avium 197N DNA polymerase III subunit beta YP_787905.1 3708720 R 360910 CDS YP_787906.1 187479881 6266895 complement(3709832..3711283) 1 NC_010645.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 3711283 dnaA 6266895 dnaA Bordetella avium 197N chromosomal replication initiation protein YP_787906.1 3709832 R 360910 CDS YP_787907.1 187479882 6266887 3711798..3711932 1 NC_010645.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 3711932 rpmH 6266887 rpmH Bordetella avium 197N 50S ribosomal protein L34 YP_787907.1 3711798 D 360910 CDS YP_787908.1 187479883 6267658 3712053..3712415 1 NC_010645.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 3712415 rnpA 6267658 rnpA Bordetella avium 197N ribonuclease P YP_787908.1 3712053 D 360910 CDS YP_787909.1 187479884 6267670 3712412..3712696 1 NC_010645.1 hypothetical protein 3712696 6267670 BAV3415 Bordetella avium 197N hypothetical protein YP_787909.1 3712412 D 360910 CDS YP_787910.1 187479885 6266560 3712745..3714424 1 NC_010645.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 3714424 oxaA 6266560 oxaA Bordetella avium 197N putative inner membrane protein translocase component YidC YP_787910.1 3712745 D 360910 CDS YP_787911.1 187479886 6267465 complement(3714524..3716848) 1 NC_010645.1 catalase-peroxidase 3716848 katG 6267465 katG Bordetella avium 197N catalase-peroxidase YP_787911.1 3714524 R 360910 CDS YP_787912.1 187479887 6267261 complement(3717500..3718699) 1 NC_010645.1 Also similar to several including BAV2859 (55.4 id.); amidohydrolase/peptidase 3718699 6267261 BAV3418 Bordetella avium 197N amidohydrolase/peptidase YP_787912.1 3717500 R 360910 CDS YP_787913.1 187479888 6266561 3718864..3720216 1 NC_010645.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 3720216 trmE 6266561 trmE Bordetella avium 197N tRNA modification GTPase TrmE YP_787913.1 3718864 D 360910 CDS YP_787914.1 187479889 6267364 3720501..3722594 1 NC_010645.1 prolyl endopeptidase 3722594 6267364 BAV3420 Bordetella avium 197N prolyl endopeptidase YP_787914.1 3720501 D 360910 CDS YP_787915.1 187479890 6266562 complement(3722608..>3723567) 1 NC_010645.1 LysR family regulatory protein >3723567 6266562 BAV3421 Bordetella avium 197N LysR family regulatory protein YP_787915.1 3722608 R 360910 CDS YP_787916.1 187479891 6266563 3723726..3726020 1 NC_010645.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 3726020 maeB2 6266563 maeB2 Bordetella avium 197N malic enzyme YP_787916.1 3723726 D 360910 CDS YP_787917.1 187479892 6267325 complement(3729216..3730382) 1 NC_010645.1 catalyzes the transfer of an amino moiety; putative aminotransferase 3730382 6267325 BAV3423 Bordetella avium 197N putative aminotransferase YP_787917.1 3729216 R 360910 CDS YP_787918.1 187479893 6266564 3730788..3730994 1 NC_010645.1 Also similar to BAV1492 , BAV1494, BAV2092 and BAV2327.; cold shock protein 3730994 cspC 6266564 cspC Bordetella avium 197N cold shock protein YP_787918.1 3730788 D 360910 CDS YP_787919.1 187479894 6266817 <3731179..3731391 1 NC_010645.1 hypothetical protein 3731391 6266817 BAV3425 Bordetella avium 197N hypothetical protein YP_787919.1 <3731179 D 360910 CDS YP_787920.1 187479895 6266565 3731807..3731935 1 NC_010645.1 hypothetical protein 3731935 6266565 BAV3426 Bordetella avium 197N hypothetical protein YP_787920.1 3731807 D 360910 CDS