-- dump date 20140619_003506 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 360910000001 SEQ_END SEQ_END NC_010645.1 3732255 3732255 DR NC_010645.1; contig end 3732255..3732255 Bordetella avium 197N YP_784539.1 CDS gidA NC_010645.1 1 1914 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1..1914 Bordetella avium 197N 6264455 YP_784540.1 CDS gidB NC_010645.1 1911 2585 D glucose inhibited division protein B 1911..2585 Bordetella avium 197N 6267068 YP_784541.1 CDS parA NC_010645.1 2582 3379 D chromosome partitioning protein 2582..3379 Bordetella avium 197N 6267069 YP_784542.1 CDS parB NC_010645.1 3448 4353 D chromosome partitioning protein 3448..4353 Bordetella avium 197N 6267484 YP_784543.1 CDS ansB NC_010645.1 4346 5353 D L-asparaginase II 4346..5353 Bordetella avium 197N 6267485 YP_784544.1 CDS tuf NC_010645.1 5849 7039 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 5849..7039 Bordetella avium 197N 6267885 YP_784545.1 CDS secE NC_010645.1 7330 7710 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 7330..7710 Bordetella avium 197N 6267887 YP_784546.1 CDS nusG NC_010645.1 7719 8252 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 7719..8252 Bordetella avium 197N 6267573 YP_784547.1 CDS rplK NC_010645.1 8309 8740 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 8309..8740 Bordetella avium 197N 6267450 YP_784548.1 CDS rplA NC_010645.1 8743 9438 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 8743..9438 Bordetella avium 197N 6267637 YP_784549.1 CDS rplJ NC_010645.1 <9682 10206 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 <9682..10206 Bordetella avium 197N 6267674 YP_784550.1 CDS rplL NC_010645.1 10291 10671 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 10291..10671 Bordetella avium 197N 6267681 YP_784551.1 CDS rpoB NC_010645.1 10808 14944 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 10808..14944 Bordetella avium 197N 6267682 YP_784552.1 CDS rpoC NC_010645.1 14944 19185 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 14944..19185 Bordetella avium 197N 6267116 YP_784553.1 CDS BAV0015 NC_010645.1 20028 21122 D Weakly similar to Chromobacterium violaceum serine/threonine kinase SWALL:Q7NRD4 (EMBL:AE016923); membrane protein 20028..21122 Bordetella avium 197N 6267706 YP_784554.1 CDS BAV0016 NC_010645.1 21129 23432 R two-component sensor protein complement(21129..23432) Bordetella avium 197N 6264456 YP_784555.1 CDS BAV0017 NC_010645.1 23444 24547 R peptidoglycan binding protein complement(23444..24547) Bordetella avium 197N 6264457 YP_784556.1 CDS BAV0018 NC_010645.1 24586 25305 R two-component response regulator complement(24586..25305) Bordetella avium 197N 6264458 YP_784557.1 CDS BAV0019 NC_010645.1 25555 26268 D Two-component response regulator 25555..26268 Bordetella avium 197N 6264459 YP_784558.1 CDS rpsL NC_010645.1 26703 27080 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 26703..27080 Bordetella avium 197N 6264460 YP_784559.1 CDS rpsG NC_010645.1 27249 27719 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 27249..27719 Bordetella avium 197N 6267719 YP_784560.1 CDS far1 NC_010645.1 27738 29840 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 27738..29840 Bordetella avium 197N 6267715 YP_784561.1 CDS tuf NC_010645.1 29917 31107 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 29917..31107 Bordetella avium 197N 6266954 YP_784562.1 CDS rpsJ NC_010645.1 31171 31482 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 31171..31482 Bordetella avium 197N 6267904 YP_784563.1 CDS rplC NC_010645.1 31950 32651 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 31950..32651 Bordetella avium 197N 6267449 YP_784564.1 CDS rplD NC_010645.1 32656 33273 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 32656..33273 Bordetella avium 197N 6267676 YP_784565.1 CDS rplW NC_010645.1 33270 33566 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 33270..33566 Bordetella avium 197N 6267677 YP_784566.1 CDS rplB NC_010645.1 33567 34394 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 33567..34394 Bordetella avium 197N 6267693 YP_784567.1 CDS rpsS NC_010645.1 34407 34682 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 34407..34682 Bordetella avium 197N 6267675 YP_784568.1 CDS rplV NC_010645.1 34686 35015 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 34686..35015 Bordetella avium 197N 6267726 YP_784569.1 CDS rpsC NC_010645.1 35025 35819 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 35025..35819 Bordetella avium 197N 6267692 YP_784570.1 CDS rplP NC_010645.1 35822 36238 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 35822..36238 Bordetella avium 197N 6267712 YP_784571.1 CDS rpmC NC_010645.1 36250 36441 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 36250..36441 Bordetella avium 197N 6267686 YP_784572.1 CDS rpsQ NC_010645.1 36444 36725 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 36444..36725 Bordetella avium 197N 6267698 YP_784573.1 CDS BAV0035 NC_010645.1 37375 37959 D Weakly similar to Rhodococcus globerulus biphenyl-2,3-diol 1,2-dioxygenase ii bphc2 SWALL:BHC2_RHOGO (SWALL:P47232); dioxygenase 37375..37959 Bordetella avium 197N 6267724 YP_784574.1 CDS BAV0036 NC_010645.1 38013 38861 D dioxygenase 38013..38861 Bordetella avium 197N 6264461 YP_784575.1 CDS BAV0037 NC_010645.1 38942 39931 D hypothetical protein 38942..39931 Bordetella avium 197N 6264462 YP_784576.1 CDS BAV0038 NC_010645.1 39939 40496 D reductase 39939..40496 Bordetella avium 197N 6264463 YP_784577.1 CDS BAV0039 NC_010645.1 40518 41507 D hypothetical protein 40518..41507 Bordetella avium 197N 6264464 YP_784578.1 CDS BAV0040 NC_010645.1 41592 42320 D short-chain dehydrogenase/reductase 41592..42320 Bordetella avium 197N 6264465 YP_784579.1 CDS BAV0041 NC_010645.1 <42353 43150 D IclR family transcriptional regulator <42353..43150 Bordetella avium 197N 6264466 YP_784580.1 CDS BAV0042 NC_010645.1 43486 44913 R aldehyde dehydrogenase complement(43486..44913) Bordetella avium 197N 6264467 YP_784581.1 CDS BAV0043 NC_010645.1 <45218 45973 D asparaginyl beta-hydroxylase <45218..45973 Bordetella avium 197N 6264468 YP_784582.1 CDS rplN NC_010645.1 46388 46756 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 46388..46756 Bordetella avium 197N 6264469 YP_784583.1 CDS rplX NC_010645.1 46767 47087 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 46767..47087 Bordetella avium 197N 6267684 YP_784584.1 CDS rplE NC_010645.1 47100 47639 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 47100..47639 Bordetella avium 197N 6267694 YP_784585.1 CDS rpsN NC_010645.1 <47649 47954 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 <47649..47954 Bordetella avium 197N 6267678 YP_784586.1 CDS rpsH NC_010645.1 47965 48360 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 47965..48360 Bordetella avium 197N 6267721 YP_784587.1 CDS rplF NC_010645.1 48371 48904 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 48371..48904 Bordetella avium 197N 6267716 YP_784588.1 CDS rplR NC_010645.1 48923 49288 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 48923..49288 Bordetella avium 197N 6267679 YP_784589.1 CDS rpsE NC_010645.1 49304 49825 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 49304..49825 Bordetella avium 197N 6267688 YP_784590.1 CDS rpmD NC_010645.1 49829 50014 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 49829..50014 Bordetella avium 197N 6267713 YP_784591.1 CDS rplO NC_010645.1 50024 50464 D late assembly protein; 50S ribosomal protein L15 50024..50464 Bordetella avium 197N 6267699 YP_784592.1 CDS secY NC_010645.1 <50479 51804 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY <50479..51804 Bordetella avium 197N 6267685 YP_784593.1 CDS infA NC_010645.1 51814 52032 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 51814..52032 Bordetella avium 197N 6267572 YP_784594.1 CDS rpmJ NC_010645.1 52068 52181 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 52068..52181 Bordetella avium 197N 6267244 YP_784595.1 CDS rpsM NC_010645.1 52224 52589 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 52224..52589 Bordetella avium 197N 6267704 YP_784596.1 CDS rpsK NC_010645.1 52605 53006 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 52605..53006 Bordetella avium 197N 6267720 YP_784597.1 CDS rpsD NC_010645.1 53018 53641 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 53018..53641 Bordetella avium 197N 6267718 YP_784598.1 CDS rpoA NC_010645.1 53814 54800 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 53814..54800 Bordetella avium 197N 6267622 YP_784599.1 CDS rplQ NC_010645.1 54963 55358 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 54963..55358 Bordetella avium 197N 6267705 YP_784600.1 CDS BAV0062 NC_010645.1 55406 55840 R histidine triad protein complement(55406..55840) Bordetella avium 197N 6267687 YP_784601.1 CDS cutA NC_010645.1 55931 56266 D periplasmic divalent cation tolerance protein 55931..56266 Bordetella avium 197N 6264470 YP_784602.1 CDS BAV0064 NC_010645.1 56278 58167 D thiol:disulfide interchange protein 56278..58167 Bordetella avium 197N 6266820 YP_784603.1 CDS hemB NC_010645.1 58249 59265 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(58249..59265) Bordetella avium 197N 6264471 YP_784604.1 CDS engB NC_010645.1 59262 >59885 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(59262..>59885) Bordetella avium 197N 6267151 YP_784605.1 CDS BAV0067 NC_010645.1 60069 60743 D cytochrome C 60069..60743 Bordetella avium 197N 6266923 YP_784606.1 CDS BAV0068 NC_010645.1 60826 62907 D C-type cytochrome bigenesis protein 60826..62907 Bordetella avium 197N 6264472 YP_784607.1 CDS BAV0069 NC_010645.1 62904 64232 D cytochrome c biogenesis protein 62904..64232 Bordetella avium 197N 6264473 YP_784608.1 CDS lysA NC_010645.1 64273 65562 R diaminopimelate decarboxylase complement(64273..65562) Bordetella avium 197N 6264474 YP_784609.1 CDS cyaY NC_010645.1 65785 66114 D hypothetical protein 65785..66114 Bordetella avium 197N 6267317 YP_784610.1 CDS BAV0072 NC_010645.1 66125 68569 R penicillin-binding protein 1A complement(66125..68569) Bordetella avium 197N 6266827 YP_784611.1 CDS aroK NC_010645.1 68684 69313 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 68684..69313 Bordetella avium 197N 6264475 YP_784612.1 CDS aroB NC_010645.1 69310 70392 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 69310..70392 Bordetella avium 197N 6266660 YP_784613.1 CDS BAV0075 NC_010645.1 <70412 71545 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein <70412..71545 Bordetella avium 197N 6266655 YP_784614.1 CDS BAV0076 NC_010645.1 71689 72762 R transcriptional regulator complement(71689..72762) Bordetella avium 197N 6264476 YP_784615.1 CDS BAV0077 NC_010645.1 72890 73549 R glutathione S-transferase complement(72890..73549) Bordetella avium 197N 6264477 YP_784616.1 CDS uvrA NC_010645.1 73573 76431 R excinuclease ABC subunit A complement(73573..76431) Bordetella avium 197N 6264478 YP_784617.1 CDS BAV0079 NC_010645.1 76612 77790 D MFS family transporter 76612..77790 Bordetella avium 197N 6267922 YP_784618.1 CDS ssb NC_010645.1 78045 78545 D single-strand binding protein 78045..78545 Bordetella avium 197N 6264479 YP_784619.1 CDS BAV0081 NC_010645.1 78771 80240 D O-antigen translocase 78771..80240 Bordetella avium 197N 6267772 YP_784620.1 CDS BAV0082 NC_010645.1 <80356 81672 D lipopolysaccharide biosynthesis protein <80356..81672 Bordetella avium 197N 6264480 YP_784621.1 CDS BAV0083 NC_010645.1 81669 82697 D lipopolysaccharide biosynthesis protein 81669..82697 Bordetella avium 197N 6264481 YP_784622.1 CDS BAV0084 NC_010645.1 82707 84026 D lipopolysaccharide biosynthesis protein 82707..84026 Bordetella avium 197N 6264482 YP_784623.1 CDS BAV0085 NC_010645.1 84023 84634 D lipopolysaccharide biosynthesis protein 84023..84634 Bordetella avium 197N 6264483 YP_784624.1 CDS BAV0086 NC_010645.1 84883 85833 D glycosyl transferase 84883..85833 Bordetella avium 197N 6264484 YP_784625.1 CDS BAV0087 NC_010645.1 85913 87856 D lipopolysaccharide biosynthesis protein 85913..87856 Bordetella avium 197N 6264485 YP_784626.1 CDS BAV0088 NC_010645.1 87862 88629 D lipopolysaccharide biosynthesis protein 87862..88629 Bordetella avium 197N 6264486 YP_784627.1 CDS BAV0089 NC_010645.1 88632 89672 D lipid A biosynthesis protein 88632..89672 Bordetella avium 197N 6264487 YP_784628.1 CDS bplL NC_010645.1 89625 91553 R sugar epimerase/dehydratase complement(89625..91553) Bordetella avium 197N 6264488 YP_784629.1 CDS bplJ NC_010645.1 91619 92977 R membrane protein complement(91619..92977) Bordetella avium 197N 6266738 YP_784630.1 CDS bplH NC_010645.1 92974 94182 R glycosyl transferase complement(92974..94182) Bordetella avium 197N 6266737 YP_784631.1 CDS bplG NC_010645.1 94272 >94871 R sugar transferase complement(94272..>94871) Bordetella avium 197N 6266736 YP_784632.1 CDS bplF NC_010645.1 94868 96046 R lipopolysaccharide biosynthesis protein complement(94868..96046) Bordetella avium 197N 6266735 YP_784633.1 CDS bplE NC_010645.1 96191 97387 R glycosyl transferase complement(96191..97387) Bordetella avium 197N 6266734 YP_784634.1 CDS bplC NC_010645.1 97405 98505 R lipopolysaccharide biosynthesis protein complement(97405..98505) Bordetella avium 197N 6266733 YP_784635.1 CDS bplB NC_010645.1 98516 99085 R acetyltransferase complement(98516..99085) Bordetella avium 197N 6266732 YP_784636.1 CDS bplA NC_010645.1 99093 100139 R oxidoreductase complement(99093..100139) Bordetella avium 197N 6266731 YP_784637.1 CDS BAV0099 NC_010645.1 100501 101172 D two-component response regulator 100501..101172 Bordetella avium 197N 6266730 YP_784638.1 CDS BAV0100 NC_010645.1 <101195 103633 D bifunctional protein two-component system sensor protein and solute-binding protein <101195..103633 Bordetella avium 197N 6264489 YP_784639.1 CDS BAV0101 NC_010645.1 103759 104850 D solute-binding periplasmic component of ABC transporter 103759..104850 Bordetella avium 197N 6264490 YP_784640.1 CDS BAV0102 NC_010645.1 104941 106719 D ABC transporter solute-binding protein 104941..106719 Bordetella avium 197N 6264491 YP_784641.1 CDS BAV0103 NC_010645.1 106712 107779 D ABC transporter ATP-binding protein 106712..107779 Bordetella avium 197N 6264492 YP_784642.1 CDS BAV0104 NC_010645.1 107991 108449 D hypothetical protein 107991..108449 Bordetella avium 197N 6264493 YP_784643.1 CDS glcB NC_010645.1 108433 110589 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(108433..110589) Bordetella avium 197N 6264494 YP_784644.1 CDS BAV0106 NC_010645.1 111030 111410 R Similar to several exported proteins from bordetellae. It appears to be unique to the bordetellae. There are no similarities to protein from other organisms.; hypothetical protein complement(111030..111410) Bordetella avium 197N 6267070 YP_784645.1 CDS ubiA NC_010645.1 111640 112623 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(111640..112623) Bordetella avium 197N 6264495 YP_784646.1 CDS BAV0108 NC_010645.1 112641 113840 R aminotransferase complement(112641..113840) Bordetella avium 197N 6264496 YP_784647.1 CDS BAV0109 NC_010645.1 113981 114469 D hypothetical protein 113981..114469 Bordetella avium 197N 6264497 YP_784648.1 CDS dapA1 NC_010645.1 114744 115673 D dihydrodipicolinate synthase 114744..115673 Bordetella avium 197N 6264498 YP_784649.1 CDS BAV0111 NC_010645.1 116123 117745 D dehydrogenase 116123..117745 Bordetella avium 197N 6266853 YP_784650.1 CDS BAV0112 NC_010645.1 117839 119101 D membrane protein 117839..119101 Bordetella avium 197N 6264499 YP_784651.1 CDS BAV0113 NC_010645.1 119274 119582 D hypothetical protein 119274..119582 Bordetella avium 197N 6264500 YP_784652.1 CDS BAV0114 NC_010645.1 <119585 120220 D membrane protein <119585..120220 Bordetella avium 197N 6264501 YP_784653.1 CDS aspS NC_010645.1 120260 122050 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 120260..122050 Bordetella avium 197N 6264502 YP_784654.1 CDS BAV0116 NC_010645.1 122153 123013 D endonuclease/exonuclease/phosphatase family protein 122153..123013 Bordetella avium 197N 6266672 YP_784655.1 CDS ybhO NC_010645.1 <123010 124203 D cardiolipin synthetase <123010..124203 Bordetella avium 197N 6264503 YP_784656.1 CDS BAV0118 NC_010645.1 124210 125097 R membrane protein complement(124210..125097) Bordetella avium 197N 6267948 YP_784657.1 CDS BAV0119 NC_010645.1 125109 126512 R transporter complement(125109..126512) Bordetella avium 197N 6264504 YP_784658.1 CDS BAV0120 NC_010645.1 126543 127106 R carbon monoxide dehydrogenase subunit G complement(126543..127106) Bordetella avium 197N 6264505 YP_784659.1 CDS BAV0121 NC_010645.1 127293 129035 D Similar to the N-terminus of fhaS in B. bronchiseptica; filamentous surface protein 127293..129035 Bordetella avium 197N 6264506 YP_784660.1 CDS BAV0122 NC_010645.1 129071 130333 R O-antigen polymerase complement(129071..130333) Bordetella avium 197N 6264507 YP_784661.1 CDS rfbD NC_010645.1 130553 131428 D dTDP-4-dehydrorhamnose reductase 130553..131428 Bordetella avium 197N 6264508 YP_784662.1 CDS rfbC NC_010645.1 131458 132030 D dTDP-6-deoxy-D-glucose-3,5-epimerase 131458..132030 Bordetella avium 197N 6267645 YP_784663.1 CDS rfaC NC_010645.1 132146 133153 D lipopolysaccharide heptosyltransferase-1 132146..133153 Bordetella avium 197N 6267644 YP_784664.1 CDS kdtA NC_010645.1 133163 134434 D 3-deoxy-D-manno-octulosonic-acid transferase 133163..134434 Bordetella avium 197N 6267639 YP_784665.1 CDS BAV0127 NC_010645.1 134431 134607 R Unique to Bordetellae; hypothetical protein complement(134431..134607) Bordetella avium 197N 6267273 YP_784666.1 CDS baf NC_010645.1 134622 135401 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(134622..135401) Bordetella avium 197N 6264509 YP_784667.1 CDS birA NC_010645.1 135398 136225 R bifunctional biotin operon repressor/biotin--[acetyl-CoA-carboxylase] synthetase BirA complement(135398..136225) Bordetella avium 197N 6266688 YP_784668.1 CDS BAV0130 NC_010645.1 136315 137448 D membrane protein 136315..137448 Bordetella avium 197N 6266719 YP_784669.1 CDS BAV0131 NC_010645.1 137448 138272 D ATP-binding component of ABC transporter 137448..138272 Bordetella avium 197N 6264510 YP_784670.1 CDS BAV0132 NC_010645.1 138259 139185 D hypothetical protein 138259..139185 Bordetella avium 197N 6264511 YP_784671.1 CDS BAV0133 NC_010645.1 139190 139780 D hypothetical protein 139190..139780 Bordetella avium 197N 6264512 YP_784672.1 CDS BAV0134 NC_010645.1 139813 140460 D hypothetical protein 139813..140460 Bordetella avium 197N 6264513 YP_784673.1 CDS dacC NC_010645.1 140593 141852 D penicillin-binding protein 140593..141852 Bordetella avium 197N 6264514 YP_784674.1 CDS dat NC_010645.1 142004 142870 D D-alanine aminotransferase 142004..142870 Bordetella avium 197N 6266846 YP_784675.1 CDS BAV0137 NC_010645.1 142922 143194 D hypothetical protein 142922..143194 Bordetella avium 197N 6266862 YP_784676.1 CDS lipB NC_010645.1 143198 143851 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 143198..143851 Bordetella avium 197N 6264515 YP_784677.1 CDS lipA NC_010645.1 143905 144900 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 143905..144900 Bordetella avium 197N 6267296 YP_784678.1 CDS meaD NC_010645.1 144961 145524 R ATP:cob(I)alamin adenosyltransferase complement(144961..145524) Bordetella avium 197N 6267295 YP_784679.1 CDS BAV0141 NC_010645.1 145647 145952 D hypothetical protein 145647..145952 Bordetella avium 197N 6267332 YP_784680.1 CDS hslU NC_010645.1 146060 147394 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(146060..147394) Bordetella avium 197N 6264516 YP_784681.1 CDS hslV NC_010645.1 147421 147960 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(147421..147960) Bordetella avium 197N 6267214 YP_784682.1 CDS dksA NC_010645.1 148333 148797 R dnaK suppressor protein complement(148333..148797) Bordetella avium 197N 6267215 YP_784683.1 CDS BAV0145 NC_010645.1 148916 150013 R hypothetical protein complement(148916..150013) Bordetella avium 197N 6266882 YP_784684.1 CDS BAV0146 NC_010645.1 150354 150845 R cation uptake regulatory protein complement(150354..150845) Bordetella avium 197N 6264517 YP_784685.1 CDS BAV0147 NC_010645.1 151069 151782 D cation ABC transporter ATP-binding protein 151069..151782 Bordetella avium 197N 6264518 YP_784686.1 CDS BAV0148 NC_010645.1 151779 152660 D cation ABC transporter membrane protein 151779..152660 Bordetella avium 197N 6264519 YP_784687.1 CDS BAV0149 NC_010645.1 <152657 153589 D cation ABC transporter substrate-binding protein <152657..153589 Bordetella avium 197N 6264520 YP_784688.1 CDS BAV0150 NC_010645.1 <153595 154215 D hypothetical protein <153595..154215 Bordetella avium 197N 6264521 YP_784689.1 CDS BAV0151 NC_010645.1 154212 155129 D high-affinity nickel-transport protein 154212..155129 Bordetella avium 197N 6264522 YP_784690.1 CDS BAV0152 NC_010645.1 155225 157255 D TonB-dependent receptor protein 155225..157255 Bordetella avium 197N 6264523 YP_784691.1 CDS xerC NC_010645.1 157249 158226 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(157249..158226) Bordetella avium 197N 6264524 YP_784692.1 CDS BAV0154 NC_010645.1 158226 158900 R hypothetical protein complement(158226..158900) Bordetella avium 197N 6267943 YP_784693.1 CDS dapF NC_010645.1 158933 159829 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(158933..159829) Bordetella avium 197N 6264525 YP_784694.1 CDS htrB1 NC_010645.1 159868 160761 R lipid A biosynthesis lauroyl acyltransferase complement(159868..160761) Bordetella avium 197N 6266860 YP_784695.1 CDS htrB2 NC_010645.1 160758 161600 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(160758..161600) Bordetella avium 197N 6267218 YP_784696.1 CDS metK NC_010645.1 <161863 163026 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase <161863..163026 Bordetella avium 197N 6267219 YP_784697.1 CDS BAV0159 NC_010645.1 163224 163448 D hypothetical protein 163224..163448 Bordetella avium 197N 6267341 YP_784698.1 CDS BAV0160 NC_010645.1 163525 164562 D glycosyl transferase 163525..164562 Bordetella avium 197N 6264526 YP_784699.1 CDS acyH NC_010645.1 <164810 166231 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase <164810..166231 Bordetella avium 197N 6264527 YP_784700.1 CDS BAV0162 NC_010645.1 166292 166627 D membrane protein 166292..166627 Bordetella avium 197N 6266596 YP_784701.1 CDS metF NC_010645.1 166627 167469 D 5,10-methylenetetrahydrofolate reductase 166627..167469 Bordetella avium 197N 6264528 YP_784702.1 CDS BAV0164 NC_010645.1 <167910 168719 D hypothetical protein <167910..168719 Bordetella avium 197N 6267337 YP_784703.1 CDS BAV0165 NC_010645.1 <168716 168955 D hypothetical protein <168716..168955 Bordetella avium 197N 6264529 YP_784704.1 CDS BAV0166 NC_010645.1 <168942 169391 D membrane protein <168942..169391 Bordetella avium 197N 6264530 YP_784705.1 CDS BAV0167 NC_010645.1 169388 170053 R 5-formyltetrahydrofolate cyclo-ligase complement(169388..170053) Bordetella avium 197N 6264531 YP_784706.1 CDS slt NC_010645.1 170098 172179 D soluble lytic murein transglycosylase 170098..172179 Bordetella avium 197N 6264532 YP_784707.1 CDS cca NC_010645.1 172176 173243 D catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 172176..173243 Bordetella avium 197N 6267756 YP_784708.1 CDS BAV0170 NC_010645.1 173240 >174442 R hypothetical protein complement(173240..>174442) Bordetella avium 197N 6266766 YP_784709.1 CDS rhlE NC_010645.1 174494 176272 R ATP-dependent RNA helicase complement(174494..176272) Bordetella avium 197N 6264533 YP_784710.1 CDS ung NC_010645.1 176533 177291 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(176533..177291) Bordetella avium 197N 6267648 YP_784711.1 CDS mtn NC_010645.1 177334 178107 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(177334..178107) Bordetella avium 197N 6267919 YP_784712.1 CDS BAV0174 NC_010645.1 178065 178916 R LysR family transcriptional regulator complement(178065..178916) Bordetella avium 197N 6267396 YP_784713.1 CDS BAV0175 NC_010645.1 179025 180500 D MFS transporter 179025..180500 Bordetella avium 197N 6264534 YP_784714.1 CDS nhaA NC_010645.1 180677 >181849 R Na+/H+ antiporter protein complement(180677..>181849) Bordetella avium 197N 6264535 YP_784715.1 CDS BAV0177 NC_010645.1 182009 182473 R nucleotide-binding protein complement(182009..182473) Bordetella avium 197N 6267421 YP_784716.1 CDS BAV0178 NC_010645.1 182470 182919 R histone acetyltransferase complement(182470..182919) Bordetella avium 197N 6264536 YP_784717.1 CDS BAV0179 NC_010645.1 182916 184418 R hypothetical protein complement(182916..184418) Bordetella avium 197N 6264537 YP_784718.1 CDS BAV0180 NC_010645.1 184498 185340 R metallo-beta-lactamase superfamily protein complement(184498..185340) Bordetella avium 197N 6264538 YP_784719.1 CDS paaK NC_010645.1 185415 186680 R phenylacetate-coenzyme A ligase complement(185415..186680) Bordetella avium 197N 6264539 YP_784720.1 CDS BAV0182 NC_010645.1 186706 187578 R high-affinity branched-chain amino acid ABC transporter ATP-binding protein complement(186706..187578) Bordetella avium 197N 6267475 YP_784721.1 CDS BAV0183 NC_010645.1 187578 188909 R branched-chain amino acid ABC transporter periplasmic amino acid-binding protein complement(187578..188909) Bordetella avium 197N 6264540 YP_784722.1 CDS BAV0184 NC_010645.1 188975 190039 R branched-chain amino acid ABC transporter permease complement(188975..190039) Bordetella avium 197N 6264541 YP_784723.1 CDS BAV0185 NC_010645.1 190052 190981 R branched-chain amino acid transport system permease complement(190052..190981) Bordetella avium 197N 6264542 YP_784724.1 CDS BAV0186 NC_010645.1 190999 191799 R high-affinity branched-chain amino acid transporter, ATP-binding protein complement(190999..191799) Bordetella avium 197N 6264543 YP_784725.1 CDS BAV0187 NC_010645.1 191802 >193766 R AMP-binding enzyme complement(191802..>193766) Bordetella avium 197N 6264544 YP_784726.1 CDS BAV0188 NC_010645.1 193934 194632 D cyclic nucleotide-binding regulatory protein 193934..194632 Bordetella avium 197N 6264545 YP_784727.1 CDS BAV0189 NC_010645.1 194909 195547 R lysine exporter complement(194909..195547) Bordetella avium 197N 6264546 YP_784728.1 CDS lysG NC_010645.1 195669 196583 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 195669..196583 Bordetella avium 197N 6264547 YP_784729.1 CDS BAV0191 NC_010645.1 196871 199096 D transferrin/hemoglobin-binding protein 196871..199096 Bordetella avium 197N 6267318 YP_784730.1 CDS BAV0192 NC_010645.1 199101 200066 R hypothetical protein complement(199101..200066) Bordetella avium 197N 6264548 YP_784731.1 CDS BAV0193 NC_010645.1 200167 200865 R hypothetical protein complement(200167..200865) Bordetella avium 197N 6264549 YP_784732.1 CDS BAV0194 NC_010645.1 201085 202317 D aminotransferase 201085..202317 Bordetella avium 197N 6264550 YP_784733.1 CDS BAV0195 NC_010645.1 202454 203470 D amino acid-binding periplasmic protein 202454..203470 Bordetella avium 197N 6264551 YP_784734.1 CDS BAV0196 NC_010645.1 203549 204004 R membrane protein complement(203549..204004) Bordetella avium 197N 6264552 YP_784735.1 CDS hmgcL NC_010645.1 204015 204923 R catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase complement(204015..204923) Bordetella avium 197N 6264553 YP_784736.1 CDS smf NC_010645.1 204963 206084 R Smf protein complement(204963..206084) Bordetella avium 197N 6267185 YP_784737.1 CDS BAV0199 NC_010645.1 206160 206783 R two-component system response regulator complement(206160..206783) Bordetella avium 197N 6267760 YP_784738.1 CDS alsB NC_010645.1 206954 207445 R leucine-responsive regulatory protein complement(206954..207445) Bordetella avium 197N 6264554 YP_784739.1 CDS BAV0201 NC_010645.1 207584 208834 D kynureninase 207584..208834 Bordetella avium 197N 6266615 YP_784740.1 CDS def NC_010645.1 208938 209450 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 208938..209450 Bordetella avium 197N 6264555 YP_784741.1 CDS fmt NC_010645.1 209568 210503 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 209568..210503 Bordetella avium 197N 6266876 YP_784742.1 CDS BAV0204 NC_010645.1 210500 211126 R pyridoxamine 5'-phosphate oxidase complement(210500..211126) Bordetella avium 197N 6267023 YP_784743.1 CDS BAV0205 NC_010645.1 211138 211773 R phosphatase complement(211138..211773) Bordetella avium 197N 6264556 YP_784744.1 CDS BAV0206 NC_010645.1 211837 212412 R hypothetical protein complement(211837..212412) Bordetella avium 197N 6264557 YP_784745.1 CDS BAV0207 NC_010645.1 212757 213947 R CoA-transferase family III complement(212757..213947) Bordetella avium 197N 6264558 YP_784746.1 CDS rimO NC_010645.1 214072 >215400 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase complement(214072..>215400) Bordetella avium 197N 6264559 YP_784747.1 CDS BAV0209 NC_010645.1 215548 215787 R DNA-binding protein complement(215548..215787) Bordetella avium 197N 6264560 YP_784748.1 CDS BAV0210 NC_010645.1 216265 217614 D hypothetical protein 216265..217614 Bordetella avium 197N 6264561 YP_784749.1 CDS BAV0211 NC_010645.1 217611 218381 D IclR family transcriptional regulator 217611..218381 Bordetella avium 197N 6264562 YP_784750.1 CDS BAV0212 NC_010645.1 218522 219271 D short chain dehydrogenase/reductase 218522..219271 Bordetella avium 197N 6264563 YP_784751.1 CDS BAV0213 NC_010645.1 219309 220277 D hypothetical protein 219309..220277 Bordetella avium 197N 6264564 YP_784752.1 CDS BAV0214 NC_010645.1 220291 221130 D hydrolase 220291..221130 Bordetella avium 197N 6264565 YP_784753.1 CDS BAV0215 NC_010645.1 221146 222645 D flavin-containing monoxygenase 221146..222645 Bordetella avium 197N 6264566 YP_784754.1 CDS BAV0216 NC_010645.1 222642 223541 D 3-hydroxybutyryl-CoA dehydrogenase 222642..223541 Bordetella avium 197N 6264567 YP_784755.1 CDS BAV0217 NC_010645.1 223799 >224779 R hypothetical protein complement(223799..>224779) Bordetella avium 197N 6264568 YP_784756.1 CDS BAV0218 NC_010645.1 224818 225786 R ketopantoate reductase complement(224818..225786) Bordetella avium 197N 6264569 YP_784757.1 CDS BAV0219 NC_010645.1 225791 226543 R class II aldolase complement(225791..226543) Bordetella avium 197N 6264570 YP_784758.1 CDS BAV0220 NC_010645.1 226664 227575 D LysR family transcriptional regulator 226664..227575 Bordetella avium 197N 6264571 YP_784759.1 CDS BAV0221 NC_010645.1 227628 228383 R GntR family transcriptional regulator complement(227628..228383) Bordetella avium 197N 6264572 YP_784760.1 CDS BAV0222 NC_010645.1 228395 229969 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(228395..229969) Bordetella avium 197N 6264573 YP_784761.1 CDS BAV0223 NC_010645.1 229982 231022 R hypothetical protein complement(229982..231022) Bordetella avium 197N 6264574 YP_784762.1 CDS BAV0224 NC_010645.1 231039 >231737 R short-chain dehydrogenase/reductase complement(231039..>231737) Bordetella avium 197N 6264575 YP_784763.1 CDS BAV0225 NC_010645.1 231955 232905 D hypothetical protein 231955..232905 Bordetella avium 197N 6264576 YP_784764.1 CDS BAV0226 NC_010645.1 232908 234071 D acyl-CoA dehydrogenase 232908..234071 Bordetella avium 197N 6264577 YP_784765.1 CDS BAV0227 NC_010645.1 234056 234667 R amino acid efflux protein complement(234056..234667) Bordetella avium 197N 6264578 YP_784766.1 CDS rsmB NC_010645.1 234757 236085 D ribosomal RNA small subunit methyltransferase 234757..236085 Bordetella avium 197N 6264579 YP_784767.1 CDS BAV0229 NC_010645.1 236128 236712 D hypothetical protein 236128..236712 Bordetella avium 197N 6267731 YP_784768.1 CDS BAV0230 NC_010645.1 236709 239006 D two-component system sensor kinase 236709..239006 Bordetella avium 197N 6264580 YP_784769.1 CDS BAV0231 NC_010645.1 239018 239701 D two-component system response regulator 239018..239701 Bordetella avium 197N 6264581 YP_784770.1 CDS trkA NC_010645.1 239698 241077 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 239698..241077 Bordetella avium 197N 6264582 YP_784771.1 CDS trkH NC_010645.1 241101 242570 D Trk system potassium uptake protein 241101..242570 Bordetella avium 197N 6267828 YP_784772.1 CDS BAV0234 NC_010645.1 242938 244149 D ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 242938..244149 Bordetella avium 197N 6267829 YP_784773.1 CDS BAV0235 NC_010645.1 244156 245085 R hypothetical protein complement(244156..245085) Bordetella avium 197N 6264583 YP_784774.1 CDS BAV0236 NC_010645.1 245295 245906 D phosphoribosyl transferase 245295..245906 Bordetella avium 197N 6264584 YP_784775.1 CDS BAV0237 NC_010645.1 245957 246427 D RNA methyltransferase 245957..246427 Bordetella avium 197N 6264585 YP_784776.1 CDS BAV0238 NC_010645.1 246442 247431 R hypothetical protein complement(246442..247431) Bordetella avium 197N 6264586 YP_784777.1 CDS gpsA NC_010645.1 247468 248532 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(247468..248532) Bordetella avium 197N 6264587 YP_784778.1 CDS secB NC_010645.1 248549 249067 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(248549..249067) Bordetella avium 197N 6267112 YP_784779.1 CDS grxC NC_010645.1 249124 249381 R glutaredoxin 3 complement(249124..249381) Bordetella avium 197N 6267747 YP_784780.1 CDS BAV0242 NC_010645.1 249446 >249868 R sulfurtransferase complement(249446..>249868) Bordetella avium 197N 6267119 YP_784781.1 CDS gpmA NC_010645.1 250052 250804 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 250052..250804 Bordetella avium 197N 6264588 YP_784782.1 CDS BAV0244 NC_010645.1 250809 252395 D exported peptidase 250809..252395 Bordetella avium 197N 6267110 YP_784783.1 CDS ctpA NC_010645.1 <252417 253871 D carboxy-terminal processing protease <252417..253871 Bordetella avium 197N 6264589 YP_784784.1 CDS thiF NC_010645.1 253868 254617 D adenylyltransferase 253868..254617 Bordetella avium 197N 6266819 YP_784785.1 CDS BAV0247 NC_010645.1 254679 255389 D GntR family transcriptional regulator 254679..255389 Bordetella avium 197N 6267802 YP_784786.1 CDS BAV0248 NC_010645.1 255396 256808 D FAD-linked oxidoreductase 255396..256808 Bordetella avium 197N 6264590 YP_784787.1 CDS alX NC_010645.1 256827 257798 R pH-regulated membrane protein complement(256827..257798) Bordetella avium 197N 6264591 YP_784788.1 CDS BAV0250 NC_010645.1 257906 258787 D LysR family transcriptional regulator 257906..258787 Bordetella avium 197N 6266617 YP_784789.1 CDS thiC NC_010645.1 258878 260791 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(258878..260791) Bordetella avium 197N 6264592 YP_784790.1 CDS BAV0252 NC_010645.1 261082 261636 D hypothetical protein 261082..261636 Bordetella avium 197N 6267798 YP_784791.1 CDS BAV0253 NC_010645.1 261655 >262050 R transcriptional regulator complement(261655..>262050) Bordetella avium 197N 6264593 YP_784792.1 CDS BAV0254 NC_010645.1 262197 >262607 R transcriptional regulator complement(262197..>262607) Bordetella avium 197N 6264594 YP_784793.1 CDS BAV0255 NC_010645.1 262695 263468 D transcriptional regulator 262695..263468 Bordetella avium 197N 6264595 YP_784794.1 CDS proB NC_010645.1 263485 264618 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(263485..264618) Bordetella avium 197N 6264596 YP_784795.1 CDS obgE NC_010645.1 264697 265815 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(264697..265815) Bordetella avium 197N 6267576 YP_784796.1 CDS rpmA NC_010645.1 265998 266258 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(265998..266258) Bordetella avium 197N 6264597 YP_784797.1 CDS rplU NC_010645.1 266291 266602 R 50S ribosomal protein L21 complement(266291..266602) Bordetella avium 197N 6267696 YP_784798.1 CDS cel NC_010645.1 266947 267912 D octaprenyl-diphosphate synthase 266947..267912 Bordetella avium 197N 6267691 YP_784799.1 CDS BAV0261 NC_010645.1 268341 >268616 R hypothetical protein complement(268341..>268616) Bordetella avium 197N 6267877 YP_784800.1 CDS BAV0262 NC_010645.1 268628 270964 R bifunctional protein include phospholipase and oxidoreductase complement(268628..270964) Bordetella avium 197N 6264598 YP_784801.1 CDS bdhA NC_010645.1 271008 271793 R catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase complement(271008..271793) Bordetella avium 197N 6264599 YP_784802.1 CDS adc NC_010645.1 271841 272581 R converts acetoacetate to acetone and carbon dioxide; acetoacetate decarboxylase complement(271841..272581) Bordetella avium 197N 6266695 YP_784803.1 CDS BAV0265 NC_010645.1 273187 273738 D hypothetical protein 273187..273738 Bordetella avium 197N 6266598 YP_784804.1 CDS BAV0266 NC_010645.1 273790 275283 D hypothetical protein 273790..275283 Bordetella avium 197N 6264600 YP_784805.1 CDS BAV0267 NC_010645.1 275344 275820 D hypothetical protein 275344..275820 Bordetella avium 197N 6264601 YP_784806.1 CDS BAV0268 NC_010645.1 275829 276233 D hypothetical protein 275829..276233 Bordetella avium 197N 6264602 YP_784807.1 CDS BAV0269 NC_010645.1 276250 277992 D hypothetical protein 276250..277992 Bordetella avium 197N 6264603 YP_784808.1 CDS BAV0270 NC_010645.1 277989 278903 D hypothetical protein 277989..278903 Bordetella avium 197N 6264604 YP_784809.1 CDS BAV0271 NC_010645.1 <278906 281524 D ATPase with chaperone activity <278906..281524 Bordetella avium 197N 6264605 YP_784810.1 CDS BAV0272 NC_010645.1 281517 283367 D hypothetical protein 281517..283367 Bordetella avium 197N 6264606 YP_784811.1 CDS BAV0273 NC_010645.1 283367 283996 D hypothetical protein 283367..283996 Bordetella avium 197N 6264607 YP_784812.1 CDS BAV0274 NC_010645.1 283993 284379 D hypothetical protein 283993..284379 Bordetella avium 197N 6264608 YP_784813.1 CDS BAV0275 NC_010645.1 284383 284535 D membrane protein 284383..284535 Bordetella avium 197N 6264609 YP_784814.1 CDS BAV0276 NC_010645.1 284535 285467 D extracellular solute-binding protein 284535..285467 Bordetella avium 197N 6264610 YP_784815.1 CDS BAV0277 NC_010645.1 285511 286755 D transport protein 285511..286755 Bordetella avium 197N 6264611 YP_784816.1 CDS BAV0278 NC_010645.1 <286850 288160 D transport protein <286850..288160 Bordetella avium 197N 6264612 YP_784817.1 CDS BAV0279 NC_010645.1 288157 288609 D lipoprotein 288157..288609 Bordetella avium 197N 6264613 YP_784818.1 CDS BAV0280 NC_010645.1 <288651 289940 D hypothetical protein <288651..289940 Bordetella avium 197N 6264614 YP_784819.1 CDS BAV0281 NC_010645.1 289937 290680 D hypothetical protein 289937..290680 Bordetella avium 197N 6264615 YP_784820.1 CDS BAV0282 NC_010645.1 290714 294478 D hypothetical protein 290714..294478 Bordetella avium 197N 6264616 YP_784821.1 CDS BAV0283 NC_010645.1 <294475 295488 D hypothetical protein <294475..295488 Bordetella avium 197N 6264617 YP_784822.1 CDS BAV0284 NC_010645.1 295613 296482 D hypothetical protein 295613..296482 Bordetella avium 197N 6264618 YP_784823.1 CDS BAV0285 NC_010645.1 296612 298021 R amidase complement(296612..298021) Bordetella avium 197N 6264619 YP_784824.1 CDS BAV0286 NC_010645.1 298069 299295 R branched-chain amino acid binding protein complement(298069..299295) Bordetella avium 197N 6264620 YP_784825.1 CDS BAV0287 NC_010645.1 <299415 300341 D LysR family transcriptional regulator <299415..300341 Bordetella avium 197N 6264621 YP_784826.1 CDS BAV0288 NC_010645.1 300438 301427 D branched-chain amino acid transport permease 300438..301427 Bordetella avium 197N 6264622 YP_784827.1 CDS BAV0289 NC_010645.1 301438 302319 D branched-chain amino acid transport permease 301438..302319 Bordetella avium 197N 6264623 YP_784828.1 CDS BAV0290 NC_010645.1 302333 303040 D branched-chain amino acid ABC transporter ATP-binding protein 302333..303040 Bordetella avium 197N 6264624 YP_784829.1 CDS BAV0291 NC_010645.1 303042 303782 D branched-chain amino acid ABC transporter ATP-binding protein 303042..303782 Bordetella avium 197N 6264625 YP_784830.1 CDS BAV0292 NC_010645.1 303898 304734 R metallo-phosphoesterase complement(303898..304734) Bordetella avium 197N 6264626 YP_784831.1 CDS BAV0293 NC_010645.1 304769 305713 R membrane protein complement(304769..305713) Bordetella avium 197N 6264627 YP_784832.1 CDS BAV0294 NC_010645.1 305783 306559 D AraC family transcriptional regulator 305783..306559 Bordetella avium 197N 6264628 YP_784833.1 CDS BAV0295 NC_010645.1 306923 308860 D membrane protein 306923..308860 Bordetella avium 197N 6264629 YP_784834.1 CDS hemA NC_010645.1 309608 310882 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 309608..310882 Bordetella avium 197N 6267876 YP_784835.1 CDS prfA NC_010645.1 310975 312045 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 310975..312045 Bordetella avium 197N 6267150 YP_784836.1 CDS hemK NC_010645.1 312051 312860 D protein methyltransferase 312051..312860 Bordetella avium 197N 6267568 YP_784837.1 CDS BAV0299 NC_010645.1 312901 313227 D hypothetical protein 312901..313227 Bordetella avium 197N 6267158 YP_784838.1 CDS ubiX NC_010645.1 313231 313797 D catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 313231..313797 Bordetella avium 197N 6264631 YP_784839.1 CDS BAV0301 NC_010645.1 313807 314295 R hypothetical protein complement(313807..314295) Bordetella avium 197N 6267913 YP_784840.1 CDS cysI NC_010645.1 314304 316028 R sulfite reductase complement(314304..316028) Bordetella avium 197N 6264632 YP_784841.1 CDS BAV0303 NC_010645.1 316243 316893 R carbonic anhydrase complement(316243..316893) Bordetella avium 197N 6266843 YP_784842.1 CDS BAV0304 NC_010645.1 317117 318157 R hypothetical protein complement(317117..318157) Bordetella avium 197N 6264633 YP_784843.1 CDS catD2 NC_010645.1 318161 >318976 R 3-oxoadipate enol-lactone hydrolase complement(318161..>318976) Bordetella avium 197N 6264634 YP_784844.1 CDS BAV0306 NC_010645.1 318981 319277 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(318981..319277) Bordetella avium 197N 6266758 YP_784845.1 CDS catC2 NC_010645.1 319292 319567 R methylmuconolactone isomerase complement(319292..319567) Bordetella avium 197N 6264635 YP_784846.1 CDS catJ NC_010645.1 319641 320285 R 3-oxoadipate CoA-transferase subunit complement(319641..320285) Bordetella avium 197N 6266757 YP_784847.1 CDS catI NC_010645.1 320288 320905 R 3-oxoadipate CoA-transferase subunit A complement(320288..320905) Bordetella avium 197N 6266760 YP_784848.1 CDS BAV0310 NC_010645.1 321109 321834 R acetoacetyl-CoA reductase complement(321109..321834) Bordetella avium 197N 6266759 YP_784849.1 CDS BAV0311 NC_010645.1 321850 323190 R short-chain fatty acids transporter complement(321850..323190) Bordetella avium 197N 6264636 YP_784850.1 CDS BAV0312 NC_010645.1 323260 324192 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(323260..324192) Bordetella avium 197N 6264637 YP_784851.1 CDS BAV0313 NC_010645.1 324428 >325099 R ; One of 11 fimbrial subunits.; fimbrial subunit complement(324428..>325099) Bordetella avium 197N 6264638 YP_784852.1 CDS BAV0314 NC_010645.1 325255 325905 R One of 11 fimbrial subunits.; fimbrial subunit complement(325255..325905) Bordetella avium 197N 6264639 YP_784853.1 CDS BAV0315 NC_010645.1 326049 >326762 R ; One of 11 fimbrial subunits.; fimbrial subunit complement(326049..>326762) Bordetella avium 197N 6264640 YP_784854.1 CDS BAV0316 NC_010645.1 326854 327561 R One of 11 fimbrial subunits.; fimbrial subunit complement(326854..327561) Bordetella avium 197N 6264641 YP_784855.1 CDS ilvD NC_010645.1 327704 329560 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(327704..329560) Bordetella avium 197N 6264642 YP_784856.1 CDS BAV0318 NC_010645.1 <329758 330294 D acetyltransferase <329758..330294 Bordetella avium 197N 6267237 YP_784857.1 CDS BAV0319 NC_010645.1 330316 331050 R hypothetical protein complement(330316..331050) Bordetella avium 197N 6264643 YP_784858.1 CDS ppc NC_010645.1 331148 333958 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 331148..333958 Bordetella avium 197N 6264644 YP_784859.1 CDS BAV0321 NC_010645.1 334097 334759 D One of 11 fimbrial subunits; fimbrial subunit 334097..334759 Bordetella avium 197N 6267558 YP_784860.1 CDS BAV0322 NC_010645.1 334764 336101 R hypothetical protein complement(334764..336101) Bordetella avium 197N 6264645 YP_784861.1 CDS BAV0323 NC_010645.1 336179 336739 R 5'(3')-deoxyribonucleotidase complement(336179..336739) Bordetella avium 197N 6264646 YP_784862.1 CDS BAV0324 NC_010645.1 336833 338323 R multidrug efflux system outer membrane protein complement(336833..338323) Bordetella avium 197N 6264647 YP_784863.1 CDS BAV0325 NC_010645.1 338340 341522 R multidrug efflux system transmembrane protein complement(338340..341522) Bordetella avium 197N 6264648 YP_784864.1 CDS BAV0326 NC_010645.1 341543 342730 R HlyD family secretion protein complement(341543..342730) Bordetella avium 197N 6264649 YP_784865.1 CDS BAV0327 NC_010645.1 342974 343996 D LysR family transcriptional regulator 342974..343996 Bordetella avium 197N 6264650 YP_784866.1 CDS BAV0328 NC_010645.1 344091 345200 D membrane protein 344091..345200 Bordetella avium 197N 6264651 YP_784867.1 CDS BAV0329 NC_010645.1 345279 346046 D hypothetical protein 345279..346046 Bordetella avium 197N 6264652 YP_784868.1 CDS kch NC_010645.1 346154 347326 D voltage-gated potassium channel 346154..347326 Bordetella avium 197N 6264653 YP_784869.1 CDS BAV0331 NC_010645.1 347393 348064 R type IV prepilin leader peptidase complement(347393..348064) Bordetella avium 197N 6267262 YP_784870.1 CDS gspF NC_010645.1 348075 349268 R general secretion pathway protein F complement(348075..349268) Bordetella avium 197N 6264654 YP_784871.1 CDS gspD NC_010645.1 349403 351985 D general secretion pathway protein D 349403..351985 Bordetella avium 197N 6267125 YP_784872.1 CDS gspE NC_010645.1 351982 353403 D general secretion pathway protein E 351982..353403 Bordetella avium 197N 6267123 YP_784873.1 CDS gspN NC_010645.1 353424 354185 R general secretion pathway protein N complement(353424..354185) Bordetella avium 197N 6267124 YP_784874.1 CDS gspM NC_010645.1 354187 354747 R general secretion pathway protein M complement(354187..354747) Bordetella avium 197N 6267133 YP_784875.1 CDS gspL NC_010645.1 354744 355718 R Weakly similarity limited to the listed proteins; general secretion pathway protein L complement(354744..355718) Bordetella avium 197N 6267132 YP_784876.1 CDS gspK NC_010645.1 355715 356653 R general secretion pathway protein K complement(355715..356653) Bordetella avium 197N 6267131 YP_784877.1 CDS gspJ NC_010645.1 356650 357258 R general secretion pathway protein J complement(356650..357258) Bordetella avium 197N 6267130 YP_784878.1 CDS gspI NC_010645.1 357255 357638 R general secretion pathway protein I complement(357255..357638) Bordetella avium 197N 6267129 YP_784879.1 CDS gspH NC_010645.1 357625 358113 R general secretion pathway protein H complement(357625..358113) Bordetella avium 197N 6267128 YP_784880.1 CDS gspG NC_010645.1 358085 >358510 R general secretion pathway protein G complement(358085..>358510) Bordetella avium 197N 6267127 YP_784881.1 CDS gspC NC_010645.1 358623 358940 R general secretion pathway protein C complement(358623..358940) Bordetella avium 197N 6267126 YP_784882.1 CDS BAV0344 NC_010645.1 359193 359516 R hypothetical protein complement(359193..359516) Bordetella avium 197N 6267122 YP_784883.1 CDS BAV0345 NC_010645.1 359614 >359919 R hypothetical protein complement(359614..>359919) Bordetella avium 197N 6264655 YP_784884.1 CDS tyrP NC_010645.1 362211 363746 D tyrosine permease 362211..363746 Bordetella avium 197N 6267907 YP_784885.1 CDS BAV0349 NC_010645.1 363762 363866 D hypothetical protein 363762..363866 Bordetella avium 197N 6267908 YP_784886.1 CDS BAV0350 NC_010645.1 363880 365253 D amino acid transporter 363880..365253 Bordetella avium 197N 6264657 YP_784887.1 CDS BAV0351 NC_010645.1 365642 366097 D hypothetical protein 365642..366097 Bordetella avium 197N 6264658 YP_784888.1 CDS BAV0352 NC_010645.1 366238 367056 R signaling protein complement(366238..367056) Bordetella avium 197N 6264659 YP_784889.1 CDS BAV0353 NC_010645.1 367409 368692 R methyl-accepting-chemotaxis-protein complement(367409..368692) Bordetella avium 197N 6264660 YP_784890.1 CDS blc NC_010645.1 368756 369313 R This CDS does not exhibit a typical prokaryotic lipoprotein signal peptide as is lacking a charged amino acid (K or R) in the first 7 residues.; Also similar to BAV3189 (36.6 38d); outer membrane lipoprotein complement(368756..369313) Bordetella avium 197N 6264661 YP_784891.1 CDS BAV0355 NC_010645.1 369408 370397 R MerR family transcriptional regulator complement(369408..370397) Bordetella avium 197N 6266720 YP_784892.1 CDS BAV0356 NC_010645.1 370809 >373739 R molybdenum-containing aldehyde oxido-reductase complement(370809..>373739) Bordetella avium 197N 6264662 YP_784893.1 CDS BAV0357 NC_010645.1 373809 >374894 R outer membrane porin protein complement(373809..>374894) Bordetella avium 197N 6264663 YP_784894.1 CDS BAV0358 NC_010645.1 375481 >375798 R restriction endonuclease (partial) complement(375481..>375798) Bordetella avium 197N 6264664 YP_784895.1 CDS BAV0359 NC_010645.1 375893 376273 R hypothetical protein complement(375893..376273) Bordetella avium 197N 6264665 YP_784896.1 CDS BAV0360 NC_010645.1 376293 >376439 R type I restriction-modification system specificity determinant (partial) complement(376293..>376439) Bordetella avium 197N 6264666 YP_784897.1 CDS BAV0361 NC_010645.1 376446 376658 R hypothetical protein complement(376446..376658) Bordetella avium 197N 6264667 YP_784898.1 CDS BAV0362 NC_010645.1 376723 377004 R hypothetical protein complement(376723..377004) Bordetella avium 197N 6264668 YP_784899.1 CDS BAV0363 NC_010645.1 377499 378572 D hypothetical protein 377499..378572 Bordetella avium 197N 6264669 YP_784900.1 CDS BAV0364 NC_010645.1 379168 379617 R hypothetical protein complement(379168..379617) Bordetella avium 197N 6264670 YP_784901.1 CDS BAV0365 NC_010645.1 379904 380680 R hypothetical protein complement(379904..380680) Bordetella avium 197N 6264671 YP_784902.1 CDS BAV0366 NC_010645.1 380680 381192 R hypothetical protein complement(380680..381192) Bordetella avium 197N 6264672 YP_784903.1 CDS BAV0367 NC_010645.1 381282 382313 R hypothetical protein complement(381282..382313) Bordetella avium 197N 6264673 YP_784904.1 CDS BAV0368 NC_010645.1 382298 >383866 R hypothetical protein complement(382298..>383866) Bordetella avium 197N 6264674 YP_784905.1 CDS BAV0369 NC_010645.1 384024 384254 R hypothetical protein complement(384024..384254) Bordetella avium 197N 6264675 YP_784906.1 CDS BAV0370 NC_010645.1 384251 384484 R Plasmid-like protein complement(384251..384484) Bordetella avium 197N 6264676 YP_784907.1 CDS BAV0371 NC_010645.1 384590 384793 R hypothetical protein complement(384590..384793) Bordetella avium 197N 6264677 YP_784908.1 CDS virB6 NC_010645.1 385134 386186 R conjugal transfer protein complement(385134..386186) Bordetella avium 197N 6264678 YP_784909.1 CDS traG NC_010645.1 386188 386448 R conjugal-transfer protein complement(386188..386448) Bordetella avium 197N 6267927 YP_784910.1 CDS BAV0374 NC_010645.1 386445 386891 R plasmid-like protein complement(386445..386891) Bordetella avium 197N 6267826 YP_784911.1 CDS BAV0377 NC_010645.1 387883 388161 R plasmid-like protein complement(387883..388161) Bordetella avium 197N 6264680 YP_784912.1 CDS traR NC_010645.1 388166 389161 R nickase complement(388166..389161) Bordetella avium 197N 6264681 YP_784913.1 CDS BAV0381 NC_010645.1 389696 390706 R plasmid-like protein complement(389696..390706) Bordetella avium 197N 6264683 YP_784914.1 CDS BAV0382 NC_010645.1 390703 390972 R plasmid-like protein complement(390703..390972) Bordetella avium 197N 6264684 YP_784915.1 CDS BAV0383 NC_010645.1 391398 392078 D serine/threonine protein phosphatase 391398..392078 Bordetella avium 197N 6264685 YP_784916.1 CDS BAV0384 NC_010645.1 392184 392498 R transposase complement(392184..392498) Bordetella avium 197N 6264686 YP_784917.1 CDS BAV0385 NC_010645.1 392900 396034 R restriction-modification system, endonuclease subunit complement(392900..396034) Bordetella avium 197N 6264687 YP_784918.1 CDS BAV0386 NC_010645.1 396052 397290 R restriction modification system, specificity subunit complement(396052..397290) Bordetella avium 197N 6264688 YP_784919.1 CDS BAV0387 NC_010645.1 397292 >400066 R restriction-modification system, modification (methylase) subunit complement(397292..>400066) Bordetella avium 197N 6264689 YP_784920.1 CDS BAV0388 NC_010645.1 400528 401154 R hypothetical protein complement(400528..401154) Bordetella avium 197N 6264690 YP_784921.1 CDS BAV0391 NC_010645.1 402633 403667 R integrase complement(402633..403667) Bordetella avium 197N 6264692 YP_784922.1 CDS BAV0392 NC_010645.1 403664 403870 R phage protein complement(403664..403870) Bordetella avium 197N 6264693 YP_784923.1 CDS BAV0393 NC_010645.1 403960 404547 R hypothetical protein complement(403960..404547) Bordetella avium 197N 6264694 YP_784924.1 CDS BAV0394 NC_010645.1 404730 >405026 R hypothetical protein complement(404730..>405026) Bordetella avium 197N 6264695 YP_784925.1 CDS BAV0395 NC_010645.1 405023 405883 R hypothetical protein complement(405023..405883) Bordetella avium 197N 6264696 YP_784926.1 CDS rdgC NC_010645.1 405880 406782 R Required for efficient pilin antigenic variation; recombination associated protein complement(405880..406782) Bordetella avium 197N 6264697 YP_784927.1 CDS BAV0397 NC_010645.1 406794 407114 R hypothetical protein complement(406794..407114) Bordetella avium 197N 6264698 YP_784928.1 CDS recT NC_010645.1 407193 408224 R phage recombination protein complement(407193..408224) Bordetella avium 197N 6264699 YP_784929.1 CDS BAV0399 NC_010645.1 408221 409075 R Also similar to the C-terminal region of Escherichia coli exodeoxyribonuclease VIII, recE; length 866 aa; id=37.4; ungapped id=41.1; E()=1.5e-25; 278 aa overlap; query 14-280 aa; subject 597-860 aa; phage-related exonuclease complement(408221..409075) Bordetella avium 197N 6267633 YP_784930.1 CDS BAV0400 NC_010645.1 409079 409264 R phage membrane protein complement(409079..409264) Bordetella avium 197N 6264700 YP_784931.1 CDS BAV0401 NC_010645.1 409261 409563 R hypothetical protein complement(409261..409563) Bordetella avium 197N 6264701 YP_784932.1 CDS BAV0402 NC_010645.1 409618 410367 R hypothetical protein complement(409618..410367) Bordetella avium 197N 6264702 YP_784933.1 CDS BAV0403 NC_010645.1 410720 410983 D hypothetical protein 410720..410983 Bordetella avium 197N 6264703 YP_784934.1 CDS BAV0404 NC_010645.1 410984 411109 R hypothetical protein complement(410984..411109) Bordetella avium 197N 6264704 YP_784935.1 CDS BAV0405 NC_010645.1 411161 >411385 R hypothetical protein complement(411161..>411385) Bordetella avium 197N 6264705 YP_784936.1 CDS BAV0406 NC_010645.1 411417 >411509 R hypothetical protein complement(411417..>411509) Bordetella avium 197N 6264706 YP_784937.1 CDS BAV0407 NC_010645.1 411608 411739 R hypothetical protein complement(411608..411739) Bordetella avium 197N 6264707 YP_784938.1 CDS BAV0408 NC_010645.1 411924 412319 D hypothetical protein 411924..412319 Bordetella avium 197N 6264708 YP_784939.1 CDS BAV0409 NC_010645.1 412523 414001 R hypothetical protein complement(412523..414001) Bordetella avium 197N 6264709 YP_784940.1 CDS BAV0410 NC_010645.1 414160 415113 R phage repressor protein complement(414160..415113) Bordetella avium 197N 6264710 YP_784941.1 CDS BAV0411 NC_010645.1 415990 416280 R hypothetical protein complement(415990..416280) Bordetella avium 197N 6264711 YP_784942.1 CDS BAV0412 NC_010645.1 416468 416932 D hypothetical protein 416468..416932 Bordetella avium 197N 6264712 YP_784943.1 CDS BAV0412A NC_010645.1 <416929 417180 D hypothetical protein <416929..417180 Bordetella avium 197N 6264713 YP_784944.1 CDS BAV0413 NC_010645.1 417177 418001 D hypothetical protein 417177..418001 Bordetella avium 197N 6264714 YP_784945.1 CDS BAV0414 NC_010645.1 417988 418686 D hypothetical protein 417988..418686 Bordetella avium 197N 6264715 YP_784946.1 CDS BAV0415 NC_010645.1 418683 419054 D hypothetical protein 418683..419054 Bordetella avium 197N 6264716 YP_784947.1 CDS BAV0416 NC_010645.1 419215 419481 D phage protein 419215..419481 Bordetella avium 197N 6264717 YP_784948.1 CDS BAV0417 NC_010645.1 419563 420075 D phage terminase small subunit 419563..420075 Bordetella avium 197N 6264718 YP_784949.1 CDS BAV0418 NC_010645.1 <420075 421613 D phage terminase large subunit <420075..421613 Bordetella avium 197N 6264719 YP_784950.1 CDS BAV0419 NC_010645.1 <421618 422121 D phage acetyltransferase <421618..422121 Bordetella avium 197N 6264720 YP_784951.1 CDS BAV0420 NC_010645.1 422118 422576 D phage protein 422118..422576 Bordetella avium 197N 6264721 YP_784952.1 CDS BAV0421 NC_010645.1 422697 422957 D phage protein 422697..422957 Bordetella avium 197N 6264722 YP_784953.1 CDS BAV0422 NC_010645.1 <422959 424626 D phage head-tail connector protein <422959..424626 Bordetella avium 197N 6264723 YP_784954.1 CDS BAV0423 NC_010645.1 424713 425060 D hypothetical protein 424713..425060 Bordetella avium 197N 6264724 YP_784955.1 CDS BAV0424 NC_010645.1 425035 425709 D phage endoprotease 425035..425709 Bordetella avium 197N 6264725 YP_784956.1 CDS BAV0425 NC_010645.1 425723 426718 D phage protein 425723..426718 Bordetella avium 197N 6264726 YP_784957.1 CDS BAV0426 NC_010645.1 426737 427159 D phage protein 426737..427159 Bordetella avium 197N 6264727 YP_784958.1 CDS BAV0427 NC_010645.1 427172 427372 D phage protein 427172..427372 Bordetella avium 197N 6264728 YP_784959.1 CDS BAV0428 NC_010645.1 427447 428118 D phage protein 427447..428118 Bordetella avium 197N 6264729 YP_784960.1 CDS BAV0429 NC_010645.1 428118 430163 D phage protein 428118..430163 Bordetella avium 197N 6264730 YP_784961.1 CDS BAV0430 NC_010645.1 430175 430768 D phage protein 430175..430768 Bordetella avium 197N 6264731 YP_784962.1 CDS BAV0431 NC_010645.1 <430765 432375 D phage protein <430765..432375 Bordetella avium 197N 6264732 YP_784963.1 CDS BAV0432 NC_010645.1 432362 435751 D hypothetical protein 432362..435751 Bordetella avium 197N 6264733 YP_784964.1 CDS BAV0433 NC_010645.1 435912 437024 D phage tail fiber protein 435912..437024 Bordetella avium 197N 6264734 YP_784965.1 CDS BAV0434 NC_010645.1 437030 437422 D hypothetical protein 437030..437422 Bordetella avium 197N 6264735 YP_784966.1 CDS BAV0435 NC_010645.1 437463 438269 D hypothetical protein 437463..438269 Bordetella avium 197N 6264736 YP_784967.1 CDS BAV0436 NC_010645.1 438274 438489 D hypothetical protein 438274..438489 Bordetella avium 197N 6264737 YP_784968.1 CDS BAV0437 NC_010645.1 438489 439040 D phage lysozyme 438489..439040 Bordetella avium 197N 6264738 YP_784969.1 CDS BAV0438 NC_010645.1 439274 440035 R phage anti-repressor protein complement(439274..440035) Bordetella avium 197N 6264739 YP_784970.1 CDS BAV0438A NC_010645.1 440032 440205 R hypothetical protein complement(440032..440205) Bordetella avium 197N 6264740 YP_784971.1 CDS BAV0438B NC_010645.1 440229 440450 R hypothetical protein complement(440229..440450) Bordetella avium 197N 6264741 YP_784972.1 CDS BAV0439 NC_010645.1 440532 440888 R hypothetical protein complement(440532..440888) Bordetella avium 197N 6264742 YP_784973.1 CDS BAV0439A NC_010645.1 440971 441240 R hypothetical protein complement(440971..441240) Bordetella avium 197N 6264743 YP_784974.1 CDS BAV0440 NC_010645.1 441376 442179 R hypothetical protein complement(441376..442179) Bordetella avium 197N 6264744 YP_784975.1 CDS BAV0441 NC_010645.1 442669 442938 R hypothetical protein complement(442669..442938) Bordetella avium 197N 6264745 YP_784976.1 CDS BAV0442 NC_010645.1 442972 443217 R hypothetical protein complement(442972..443217) Bordetella avium 197N 6264746 YP_784977.1 CDS BAV0443 NC_010645.1 443272 443553 R hypothetical protein complement(443272..443553) Bordetella avium 197N 6264747 YP_784978.1 CDS BAV0444 NC_010645.1 443860 444423 R hypothetical protein complement(443860..444423) Bordetella avium 197N 6267864 YP_784979.1 CDS katB NC_010645.1 444483 >446006 R catalase complement(444483..>446006) Bordetella avium 197N 6264749 YP_784980.1 CDS BAV0446 NC_010645.1 446199 447602 R Xanthine/uracil permease complement(446199..447602) Bordetella avium 197N 6267260 YP_784981.1 CDS htpG NC_010645.1 447783 449675 D molecular chaperone; heat shock protein 90 447783..449675 Bordetella avium 197N 6264750 YP_784982.1 CDS BAV0448 NC_010645.1 449747 450367 R glutathione S-transferase complement(449747..450367) Bordetella avium 197N 6267216 YP_784983.1 CDS ampD NC_010645.1 450383 450994 R N-acetyl-anhydromuranmyl-L-alanine amidase complement(450383..450994) Bordetella avium 197N 6264751 YP_784984.1 CDS BAV0450 NC_010645.1 451031 451270 R hypothetical protein complement(451031..451270) Bordetella avium 197N 6266625 YP_784985.1 CDS BAV0451 NC_010645.1 451276 452118 R cytochrome assembly protein complement(451276..452118) Bordetella avium 197N 6264752 YP_784986.1 CDS ffh NC_010645.1 452236 453648 D signal recognition particle protein 452236..453648 Bordetella avium 197N 6264753 YP_784987.1 CDS thiS NC_010645.1 453730 453930 R thiamine biosynthesis protein complement(453730..453930) Bordetella avium 197N 6266972 YP_784988.1 CDS pip NC_010645.1 453938 454879 R proline iminopeptidase complement(453938..454879) Bordetella avium 197N 6267805 YP_784989.1 CDS trmB NC_010645.1 454906 455676 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(454906..455676) Bordetella avium 197N 6267538 YP_784990.1 CDS BAV0456 NC_010645.1 456166 457668 R GntR family transcriptional regulator complement(456166..457668) Bordetella avium 197N 6267856 YP_784991.1 CDS hutG NC_010645.1 457988 458779 R N-formylglutamate amidohydrolase complement(457988..458779) Bordetella avium 197N 6264754 YP_784992.1 CDS arcB NC_010645.1 459136 460185 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(459136..460185) Bordetella avium 197N 6267223 YP_784993.1 CDS BAV0459 NC_010645.1 460508 461149 D negative transcriptional regulator of degradative-enzyme production 460508..461149 Bordetella avium 197N 6266638 YP_784994.1 CDS BAV0460 NC_010645.1 461446 462744 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 461446..462744 Bordetella avium 197N 6264755 YP_784995.1 CDS BAV0461 NC_010645.1 462741 463808 D phosphotransferase 462741..463808 Bordetella avium 197N 6264756 YP_784996.1 CDS BAV0462 NC_010645.1 463805 465181 D decarboxylating aminotransferase 463805..465181 Bordetella avium 197N 6264757 YP_784997.1 CDS BAV0463 NC_010645.1 465404 465829 R AsnC/Lrp family transcriptional regulator complement(465404..465829) Bordetella avium 197N 6264758 YP_784998.1 CDS BAV0465 NC_010645.1 466932 467588 R One of 11 fimbrial subunits; fimbrial subunit complement(466932..467588) Bordetella avium 197N 6264760 YP_784999.1 CDS BAV0466 NC_010645.1 467767 471684 R serine protease autotransporter complement(467767..471684) Bordetella avium 197N 6264761 YP_785000.1 CDS BAV0467 NC_010645.1 472024 472620 R inner membrane enzyme; removes 1-phosphate groups from a number of lipid A precursors which provides a point of attachment for to moieties such as phosphoethanolamine which is attached by HP0022; lipid A 1-phosphatase complement(472024..472620) Bordetella avium 197N 6264762 YP_785001.1 CDS BAV0468 NC_010645.1 472617 474203 R attaches phosphoethanolamine to lipid A at the 1 position of the disaccharide backbone in contrast to other gram-negative bacteria; lipid A phosphoethanolamine transferase complement(472617..474203) Bordetella avium 197N 6264763 YP_785002.1 CDS BAV0469 NC_010645.1 474353 474862 D This CDS is also similar to its adjacent CDS,BAV0470, 36.875 38dentity (39.0730ngapped) in 160 aa overlap; heat shock lipoprotein 474353..474862 Bordetella avium 197N 6264764 YP_785003.1 CDS BAV0470 NC_010645.1 474935 475447 D This CDS is also similar to its adjacent CDS,BAV0469, 36.875 38dentity (39.0730ngapped) in 160 aa overlap; heat shock lipoprotein 474935..475447 Bordetella avium 197N 6264765 YP_785004.1 CDS BAV0471 NC_010645.1 475489 476217 D rhodanese superfamily protein 475489..476217 Bordetella avium 197N 6264766 YP_785005.1 CDS metG NC_010645.1 476289 478364 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(476289..478364) Bordetella avium 197N 6264767 YP_785006.1 CDS BAV0473 NC_010645.1 478540 478812 R This CDS seems to be present in the Bordetellae only; hypothetical protein complement(478540..478812) Bordetella avium 197N 6267338 YP_785007.1 CDS mrp NC_010645.1 478915 480009 D amidase 478915..480009 Bordetella avium 197N 6264768 YP_785008.1 CDS BAV0475 NC_010645.1 480012 481865 D surface antigen 480012..481865 Bordetella avium 197N 6267389 YP_785009.1 CDS BAV0476 NC_010645.1 481862 485482 D hypothetical protein 481862..485482 Bordetella avium 197N 6264769 YP_785010.1 CDS dcd NC_010645.1 485531 486094 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 485531..486094 Bordetella avium 197N 6264770 YP_785011.1 CDS BAV0478 NC_010645.1 486095 486610 R acetyltransferase complement(486095..486610) Bordetella avium 197N 6266867 YP_785012.1 CDS BAV0479 NC_010645.1 486690 487145 D hypothetical protein 486690..487145 Bordetella avium 197N 6264771 YP_785013.1 CDS adiA NC_010645.1 487302 489569 D biodegradative arginine decarboxylase 487302..489569 Bordetella avium 197N 6264772 YP_785014.1 CDS BAV0481 NC_010645.1 489630 490817 D hypothetical protein 489630..490817 Bordetella avium 197N 6266603 YP_785015.1 CDS BAV0482 NC_010645.1 490814 491887 R LacI family transcriptional regulator complement(490814..491887) Bordetella avium 197N 6264773 YP_785016.1 CDS BAV0483 NC_010645.1 492125 493339 D branched-chain amino acid ABC transporter periplasmic binding protein 492125..493339 Bordetella avium 197N 6264774 YP_785017.1 CDS BAV0484 NC_010645.1 493392 494264 D branched-chain amino acid ABC transporter permease 493392..494264 Bordetella avium 197N 6264775 YP_785018.1 CDS BAV0485 NC_010645.1 494277 496058 D branched-chain amino acid ABC transporter permease 494277..496058 Bordetella avium 197N 6264776 YP_785019.1 CDS BAV0486 NC_010645.1 496042 496746 D branched-chain amino acid ABC transporter ATP-binding protein 496042..496746 Bordetella avium 197N 6264777 YP_785020.1 CDS dad NC_010645.1 496743 497318 D 2,4'-dihydroxyacetophenone dioxygenase 496743..497318 Bordetella avium 197N 6264778 YP_785021.1 CDS fabG NC_010645.1 497332 498099 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 497332..498099 Bordetella avium 197N 6266847 YP_785022.1 CDS gldA NC_010645.1 <498096 499193 D alcohol dehydrogenase <498096..499193 Bordetella avium 197N 6264779 YP_785023.1 CDS BAV0490 NC_010645.1 499190 500245 D alcohol dehydrogenase 499190..500245 Bordetella avium 197N 6267075 YP_785024.1 CDS gcvT NC_010645.1 500603 501703 D catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 500603..501703 Bordetella avium 197N 6264780 YP_785025.1 CDS gcvH NC_010645.1 501780 502157 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 501780..502157 Bordetella avium 197N 6267062 YP_785026.1 CDS gcvP NC_010645.1 502209 505076 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 502209..505076 Bordetella avium 197N 6267060 YP_785027.1 CDS BAV0494 NC_010645.1 505172 505996 R hypothetical protein complement(505172..505996) Bordetella avium 197N 6267061 YP_785028.1 CDS BAV0495 NC_010645.1 506233 508119 R This CDS is also similar to its adjacent CDS,BAV0496, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.; hypothetical protein complement(506233..508119) Bordetella avium 197N 6264781 YP_785029.1 CDS BAV0496 NC_010645.1 508289 509737 R This CDS is also similar to its adjacent CDS,BAV0495, 35.041 38dentity (36.0760ngapped) in 488 aa overlap.; hypothetical protein complement(508289..509737) Bordetella avium 197N 6264782 YP_785030.1 CDS BAV0497 NC_010645.1 509849 511324 R This CDS is also similar to BAV0502, 31.846 identity (32.84538ngapped) in 493 aa overlap.; hypothetical protein complement(509849..511324) Bordetella avium 197N 6264783 YP_785031.1 CDS BAV0498 NC_010645.1 511371 513023 R ABC transporter ATP-binding protein complement(511371..513023) Bordetella avium 197N 6264784 YP_785032.1 CDS BAV0499 NC_010645.1 513027 513920 R ABC transporter permease complement(513027..513920) Bordetella avium 197N 6264785 YP_785033.1 CDS BAV0500 NC_010645.1 513923 514864 R ABC transporter permease complement(513923..514864) Bordetella avium 197N 6264786 YP_785034.1 CDS BAV0501 NC_010645.1 514946 516511 R extracellular solute-binding protein complement(514946..516511) Bordetella avium 197N 6264787 YP_785035.1 CDS BAV0502 NC_010645.1 516585 518090 R This CDS is also similar to BAV0497, 31.846 identity (32.84538ngapped) in 493 aa overlap.; hypothetical protein complement(516585..518090) Bordetella avium 197N 6264788 YP_785036.1 CDS mmsA NC_010645.1 518193 519686 R methylmalonate-semialdehyde dehydrogenase complement(518193..519686) Bordetella avium 197N 6264789 YP_785037.1 CDS BAV0504 NC_010645.1 519731 521014 R catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase complement(519731..521014) Bordetella avium 197N 6267361 YP_785038.1 CDS BAV0505 NC_010645.1 521212 522615 D GntR family transcriptional regulator 521212..522615 Bordetella avium 197N 6264790 YP_785039.1 CDS folA NC_010645.1 522669 523151 R dihydrofolate reductase complement(522669..523151) Bordetella avium 197N 6264791 YP_785040.1 CDS thyA NC_010645.1 523154 524125 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(523154..524125) Bordetella avium 197N 6267024 YP_785041.1 CDS BAV0508 NC_010645.1 524169 524600 R hypothetical protein complement(524169..524600) Bordetella avium 197N 6267810 YP_785042.1 CDS BAV0509 NC_010645.1 524728 525375 D hypothetical protein 524728..525375 Bordetella avium 197N 6264792 YP_785043.1 CDS BAV0510 NC_010645.1 <526137 527240 D O-antigen biosynthesis glycosyltransferase <526137..527240 Bordetella avium 197N 6264793 YP_785044.1 CDS wbpO NC_010645.1 527330 528604 D polysaccharide biosynthesis protein 527330..528604 Bordetella avium 197N 6264794 YP_785045.1 CDS wbpP NC_010645.1 528626 529651 D UDP-N-acetylglucosamine C4 epimerase 528626..529651 Bordetella avium 197N 6267933 YP_785046.1 CDS BAV0513 NC_010645.1 529653 531008 D membrane protein 529653..531008 Bordetella avium 197N 6267934 YP_785047.1 CDS BAV0514 NC_010645.1 531009 532118 D O-antigen biosynthesis glycosyltranferase 531009..532118 Bordetella avium 197N 6264795 YP_785048.1 CDS wbpS NC_010645.1 532126 534051 D O-antigen biosynthesis aminotransferase 532126..534051 Bordetella avium 197N 6264796 YP_785049.1 CDS BAV0516 NC_010645.1 534048 535148 D O-antigen biosynthesis glycosyltransferase 534048..535148 Bordetella avium 197N 6267935 YP_785050.1 CDS wbpT NC_010645.1 535156 536286 D O-antigen biosynthesis glycosyltransferase 535156..536286 Bordetella avium 197N 6264797 YP_785051.1 CDS wbnL NC_010645.1 536283 537416 D O-antigen biosynthesis glycosyltransferase 536283..537416 Bordetella avium 197N 6267936 YP_785052.1 CDS pgi NC_010645.1 537441 539003 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(537441..539003) Bordetella avium 197N 6267932 YP_785053.1 CDS pgm NC_010645.1 539010 >540392 R phosphoglucomutase complement(539010..>540392) Bordetella avium 197N 6267506 YP_785054.1 CDS BAV0521 NC_010645.1 540632 541273 D hypothetical protein 540632..541273 Bordetella avium 197N 6267508 YP_785055.1 CDS BAV0522 NC_010645.1 541329 542744 D oxidoreductase 541329..542744 Bordetella avium 197N 6264798 YP_785056.1 CDS BAV0523 NC_010645.1 542749 543435 D two-component system response regulator 542749..543435 Bordetella avium 197N 6264799 YP_785057.1 CDS BAV0524 NC_010645.1 543432 544742 D two-component system sensor kinase 543432..544742 Bordetella avium 197N 6264800 YP_785058.1 CDS BAV0525 NC_010645.1 545001 545735 D GntR family transcriptional regulator 545001..545735 Bordetella avium 197N 6264801 YP_785059.1 CDS BAV0526 NC_010645.1 545818 547740 D sulfatase 545818..547740 Bordetella avium 197N 6264802 YP_785060.1 CDS fah NC_010645.1 547781 549094 R fumarylacetoacetase complement(547781..549094) Bordetella avium 197N 6264803 YP_785061.1 CDS hmgA NC_010645.1 549148 550446 R An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase complement(549148..550446) Bordetella avium 197N 6266951 YP_785062.1 CDS BAV0529 NC_010645.1 550568 551488 D LysR family transcriptional regulator 550568..551488 Bordetella avium 197N 6267184 YP_785063.1 CDS BAV0530 NC_010645.1 551492 551689 R hypothetical protein complement(551492..551689) Bordetella avium 197N 6264804 YP_785064.1 CDS BAV0531 NC_010645.1 551701 >553359 R FAD-dependent oxidoreductase complement(551701..>553359) Bordetella avium 197N 6264805 YP_785065.1 CDS BAV0532 NC_010645.1 553456 554409 R cyclase complement(553456..554409) Bordetella avium 197N 6264806 YP_785066.1 CDS fpg NC_010645.1 554522 555349 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(554522..555349) Bordetella avium 197N 6264807 YP_785067.1 CDS BAV0534 NC_010645.1 <555411 557231 D hypothetical protein <555411..557231 Bordetella avium 197N 6267029 YP_785068.1 CDS lolB NC_010645.1 557228 557812 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 557228..557812 Bordetella avium 197N 6264808 YP_785069.1 CDS ipk NC_010645.1 <557822 558748 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase <557822..558748 Bordetella avium 197N 6264809 YP_785070.1 CDS prs NC_010645.1 558974 559906 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 558974..559906 Bordetella avium 197N 6267852 YP_785071.1 CDS rplY NC_010645.1 560020 560616 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 560020..560616 Bordetella avium 197N 6267585 YP_785072.1 CDS pth NC_010645.1 560665 561288 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 560665..561288 Bordetella avium 197N 6267695 YP_785073.1 CDS BAV0540 NC_010645.1 561288 562037 D . Seems to be unique to the Bordetellae.; membrane protein 561288..562037 Bordetella avium 197N 6267589 YP_785074.1 CDS engD NC_010645.1 562153 563244 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 562153..563244 Bordetella avium 197N 6264810 YP_785075.1 CDS BAV0542 NC_010645.1 563605 >564552 R hypothetical protein complement(563605..>564552) Bordetella avium 197N 6266925 YP_785076.1 CDS hsdR NC_010645.1 564642 567743 R type I restriction enzyme EcoR124II R protein complement(564642..567743) Bordetella avium 197N 6264811 YP_785077.1 CDS prrC NC_010645.1 567740 568942 R anticodon nuclease complement(567740..568942) Bordetella avium 197N 6267210 YP_785078.1 CDS hsdS NC_010645.1 568944 570164 R type i restriction enzyme EcoR124II specificity protein complement(568944..570164) Bordetella avium 197N 6267584 YP_785079.1 CDS hsdM NC_010645.1 570161 571720 R type i restriction enzyme EcoR124II M protein complement(570161..571720) Bordetella avium 197N 6267211 YP_785080.1 CDS BAV0547 NC_010645.1 571956 572186 R hypothetical protein complement(571956..572186) Bordetella avium 197N 6267209 YP_785081.1 CDS BAV0548 NC_010645.1 572690 573193 R MarR family transcriptional regulator complement(572690..573193) Bordetella avium 197N 6264812 YP_785082.1 CDS BAV0549 NC_010645.1 <573499 573738 D Partial CDS. Seems to be truncated at the N-terminus; hypothetical protein <573499..573738 Bordetella avium 197N 6264813 YP_785083.1 CDS amnB NC_010645.1 573802 574725 D 2-aminophenol 1,6-dioxygenase subunit beta 573802..574725 Bordetella avium 197N 6264814 YP_785084.1 CDS amnA NC_010645.1 574760 575572 D 2-aminophenol 1,6-dioxygenase subunit alpha 574760..575572 Bordetella avium 197N 6266622 YP_785085.1 CDS amnC NC_010645.1 <575626 577107 D 2-aminomuconic semialdehyde dehydrogenase <575626..577107 Bordetella avium 197N 6266621 YP_785086.1 CDS amnE NC_010645.1 577112 577549 D 2-aminomuconate deaminase 577112..577549 Bordetella avium 197N 6266623 YP_785087.1 CDS BAV0554 NC_010645.1 577652 578815 R calcium/proton antiporter complement(577652..578815) Bordetella avium 197N 6266624 YP_785088.1 CDS BAV0555 NC_010645.1 579418 580266 D 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 579418..580266 Bordetella avium 197N 6264815 YP_785089.1 CDS BAV0556 NC_010645.1 580313 581728 R outer membrane protein complement(580313..581728) Bordetella avium 197N 6264816 YP_785090.1 CDS BAV0557 NC_010645.1 581739 581939 R hypothetical protein complement(581739..581939) Bordetella avium 197N 6264817 YP_785091.1 CDS BAV0558 NC_010645.1 582012 582410 R hypothetical protein complement(582012..582410) Bordetella avium 197N 6264818 YP_785092.1 CDS BAV0559 NC_010645.1 582825 585305 D hypothetical protein 582825..585305 Bordetella avium 197N 6264819 YP_785093.1 CDS BAV0560 NC_010645.1 585302 585706 D hypothetical protein 585302..585706 Bordetella avium 197N 6264820 YP_785094.1 CDS benE NC_010645.1 585713 586918 R benzoate transport protein complement(585713..586918) Bordetella avium 197N 6264821 YP_785095.1 CDS BAV0562 NC_010645.1 586915 587169 R ferredoxin complement(586915..587169) Bordetella avium 197N 6266696 YP_785096.1 CDS coaD NC_010645.1 587221 587724 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(587221..587724) Bordetella avium 197N 6264822 YP_785097.1 CDS BAV0564 NC_010645.1 587746 588366 R hypothetical protein complement(587746..588366) Bordetella avium 197N 6266798 YP_785098.1 CDS ftsY NC_010645.1 <588769 589779 D cell division protein <588769..589779 Bordetella avium 197N 6264823 YP_785099.1 CDS BAV0566 NC_010645.1 589833 591419 R adenylate cyclase complement(589833..591419) Bordetella avium 197N 6267043 YP_785100.1 CDS BAV0567 NC_010645.1 591687 592484 R IclR family transcriptional regulator complement(591687..592484) Bordetella avium 197N 6264824 YP_785101.1 CDS BAV0568 NC_010645.1 592495 592777 R hypothetical protein complement(join(592495..592602,592604..592777)) Bordetella avium 197N 6264825 YP_785102.1 CDS ribB NC_010645.1 593118 594284 D bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 593118..594284 Bordetella avium 197N 6264826 YP_785103.1 CDS ribH NC_010645.1 594294 594815 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 594294..594815 Bordetella avium 197N 6267651 YP_785104.1 CDS nusB NC_010645.1 <594823 595293 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB <594823..595293 Bordetella avium 197N 6267655 YP_785105.1 CDS thiL NC_010645.1 <595309 596277 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase <595309..596277 Bordetella avium 197N 6267448 YP_785106.1 CDS pgpA NC_010645.1 596367 596894 D phosphatidylglycerophosphatase 596367..596894 Bordetella avium 197N 6267804 YP_785107.1 CDS BAV0574 NC_010645.1 596891 597457 D hypothetical protein 596891..597457 Bordetella avium 197N 6267509 YP_785108.1 CDS pyrF NC_010645.1 597473 598291 R type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(597473..598291) Bordetella avium 197N 6264827 YP_785109.1 CDS ndh NC_010645.1 598297 599610 R NADH dehydrogenase complement(598297..599610) Bordetella avium 197N 6267613 YP_785110.1 CDS dgkA NC_010645.1 599681 600073 R diacylglycerol kinase complement(599681..600073) Bordetella avium 197N 6267418 YP_785111.1 CDS brkB NC_010645.1 600275 601174 R serum resistance protein; BrkB complement(600275..601174) Bordetella avium 197N 6266878 YP_785112.1 CDS groEL NC_010645.1 601336 602976 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(601336..602976) Bordetella avium 197N 6266740 YP_785113.1 CDS groES NC_010645.1 603010 603297 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(603010..603297) Bordetella avium 197N 6266810 YP_785114.1 CDS BAV0581 NC_010645.1 604039 604842 R hypothetical protein complement(604039..604842) Bordetella avium 197N 6266809 YP_785115.1 CDS BAV0583 NC_010645.1 606875 607699 D AraC family transcriptional regulator 606875..607699 Bordetella avium 197N 6264829 YP_785116.1 CDS arsR NC_010645.1 607899 608258 D transcriptional regulator 607899..608258 Bordetella avium 197N 6264830 YP_785117.1 CDS BAV0585 NC_010645.1 608255 608584 D hypothetical protein 608255..608584 Bordetella avium 197N 6266666 YP_785118.1 CDS arsC NC_010645.1 608614 609036 D arsenate reductase 608614..609036 Bordetella avium 197N 6264831 YP_785119.1 CDS arsH NC_010645.1 <609029 609751 D ArsH protein ( NADPH-dependent FMN reductase) <609029..609751 Bordetella avium 197N 6266664 YP_785120.1 CDS BAV0588 NC_010645.1 609986 611488 R hypothetical protein complement(609986..611488) Bordetella avium 197N 6266665 YP_785121.1 CDS BAV0589 NC_010645.1 611485 612471 R hypothetical protein complement(611485..612471) Bordetella avium 197N 6264832 YP_785122.1 CDS BAV0590 NC_010645.1 612565 613920 D hypothetical protein 612565..613920 Bordetella avium 197N 6264833 YP_785123.1 CDS BAV0591 NC_010645.1 613945 614814 D transcriptional regulator 613945..614814 Bordetella avium 197N 6264834 YP_785124.1 CDS BAV0592 NC_010645.1 615012 615167 D hypothetical protein 615012..615167 Bordetella avium 197N 6264835 YP_785125.1 CDS bpdF NC_010645.1 615527 616357 D 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase 615527..616357 Bordetella avium 197N 6264836 YP_785126.1 CDS bpdE NC_010645.1 616521 617426 D 2,3-dihydroxybiphenyl 1,2-dioxygenase 616521..617426 Bordetella avium 197N 6266723 YP_785127.1 CDS BAV0595 NC_010645.1 617492 618664 D pigment production hydroxylase 617492..618664 Bordetella avium 197N 6266722 YP_785128.1 CDS BAV0596 NC_010645.1 618672 619853 D monooxygenase/oxidoreductase 618672..619853 Bordetella avium 197N 6264837 YP_785129.1 CDS BAV0597 NC_010645.1 619924 620814 D LysR family transcriptional regulator 619924..620814 Bordetella avium 197N 6264838 YP_785130.1 CDS mhpD NC_010645.1 <620993 621793 D catalyzes the formation of 2-keto-4-hydroxypentanoic acid from 2-hydroxypentadienoic acid; 2-keto-4-pentenoate hydratase <620993..621793 Bordetella avium 197N 6264839 YP_785131.1 CDS bphG NC_010645.1 621855 622805 D catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 621855..622805 Bordetella avium 197N 6266727 YP_785132.1 CDS bphF NC_010645.1 622805 623854 D 4-hydroxy-2-oxovalerate aldolase 622805..623854 Bordetella avium 197N 6266729 YP_785133.1 CDS BAV0601 NC_010645.1 <623861 624307 D hypothetical protein <623861..624307 Bordetella avium 197N 6266728 YP_785134.1 CDS BAV0602 NC_010645.1 624594 625994 D metabolite transporter 624594..625994 Bordetella avium 197N 6264840 YP_785135.1 CDS BAV0603 NC_010645.1 626088 627227 D outer membrane porin 626088..627227 Bordetella avium 197N 6264841 YP_785136.1 CDS BAV0604 NC_010645.1 627281 627748 D membrane protein 627281..627748 Bordetella avium 197N 6264842 YP_785137.1 CDS BAV0605 NC_010645.1 627789 627974 D membrane protein 627789..627974 Bordetella avium 197N 6264843 YP_785138.1 CDS BAV0606 NC_010645.1 628026 629531 D catabolic enzyme 628026..629531 Bordetella avium 197N 6264844 YP_785139.1 CDS BAV0607 NC_010645.1 629628 630326 D TetR family transcriptional regulator 629628..630326 Bordetella avium 197N 6264845 YP_785140.1 CDS BAV0608 NC_010645.1 630522 631436 D short-chain dehydrogenase 630522..631436 Bordetella avium 197N 6264846 YP_785141.1 CDS BAV0609 NC_010645.1 631433 632659 D iron-sulfur containing oxygenase 631433..632659 Bordetella avium 197N 6264847 YP_785142.1 CDS BAV0610 NC_010645.1 632663 633835 D acyl-CoA dehydrogenase 632663..633835 Bordetella avium 197N 6264848 YP_785143.1 CDS BAV0611 NC_010645.1 633849 634985 D CoA-transferase 633849..634985 Bordetella avium 197N 6264849 YP_785144.1 CDS phtD NC_010645.1 635035 636021 D 4,5-dihydroxyphthalate decarboxylase 635035..636021 Bordetella avium 197N 6264850 YP_785145.1 CDS phnG NC_010645.1 <636029 637042 D 1-hydroxy-2-naphthoate dioxygenase <636029..637042 Bordetella avium 197N 6267537 YP_785146.1 CDS BAV0614 NC_010645.1 637054 637908 D 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase 637054..637908 Bordetella avium 197N 6267527 YP_785147.1 CDS BAV0615 NC_010645.1 637921 638889 D oxidoreductase 637921..638889 Bordetella avium 197N 6264851 YP_785148.1 CDS BAV0616 NC_010645.1 639268 639729 R membrane protein complement(639268..639729) Bordetella avium 197N 6264852 YP_785149.1 CDS BAV0617 NC_010645.1 639730 639990 R hypothetical protein complement(639730..639990) Bordetella avium 197N 6264853 YP_785150.1 CDS BAV0618 NC_010645.1 640000 640437 D hypothetical protein 640000..640437 Bordetella avium 197N 6264854 YP_785151.1 CDS BAV0619 NC_010645.1 640452 640958 D membrane protein 640452..640958 Bordetella avium 197N 6264855 YP_785152.1 CDS BAV0620 NC_010645.1 641108 642133 R hypothetical protein complement(641108..642133) Bordetella avium 197N 6264856 YP_785153.1 CDS BAV0621 NC_010645.1 642188 642955 R short chain dehydrogenase/reductase complement(642188..642955) Bordetella avium 197N 6264857 YP_785154.1 CDS BAV0622 NC_010645.1 642952 643671 R short-chain dehydrogenase/reductase complement(642952..643671) Bordetella avium 197N 6264858 YP_785155.1 CDS BAV0623 NC_010645.1 643680 644576 R carboxyvinyl-carboxyphosphonate phosphorylmutase complement(643680..644576) Bordetella avium 197N 6264859 YP_785156.1 CDS BAV0624 NC_010645.1 644598 645311 R GntR family transcriptional regulator complement(644598..645311) Bordetella avium 197N 6264860 YP_785157.1 CDS acnA1 NC_010645.1 645573 648290 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 645573..648290 Bordetella avium 197N 6264861 YP_785158.1 CDS BAV0626 NC_010645.1 648321 649682 D hydantoinase 648321..649682 Bordetella avium 197N 6266583 YP_785159.1 CDS BAV0627 NC_010645.1 649716 650444 D isochorismatase hydrolase 649716..650444 Bordetella avium 197N 6264862 YP_785160.1 CDS BAV0628 NC_010645.1 650454 651449 D hypothetical protein 650454..651449 Bordetella avium 197N 6264863 YP_785161.1 CDS actP NC_010645.1 651575 654016 R copper-transporting P-type ATPase complement(651575..654016) Bordetella avium 197N 6264864 YP_785162.1 CDS BAV0630 NC_010645.1 654431 655144 D hypothetical protein 654431..655144 Bordetella avium 197N 6266595 YP_785163.1 CDS BAV0631 NC_010645.1 655368 656201 R oxidoreductase complement(655368..656201) Bordetella avium 197N 6264865 YP_785164.1 CDS BAV0632 NC_010645.1 656287 656625 R membrane protein complement(656287..656625) Bordetella avium 197N 6264866 YP_785165.1 CDS BAV0633 NC_010645.1 656622 658502 R membrane protein complement(656622..658502) Bordetella avium 197N 6264867 YP_785166.1 CDS BAV0634 NC_010645.1 658505 660967 R ferric-siderophore receptor complement(658505..660967) Bordetella avium 197N 6264868 YP_785167.1 CDS fecR NC_010645.1 661079 >662035 R regulator of iron dicitrate transport complement(661079..>662035) Bordetella avium 197N 6264869 YP_785168.1 CDS fecI NC_010645.1 662032 662727 R RNA polymerase sigma factor complement(662032..662727) Bordetella avium 197N 6266970 YP_785169.1 CDS BAV0637 NC_010645.1 662856 663350 R hypothetical protein complement(662856..663350) Bordetella avium 197N 6266968 YP_785170.1 CDS BAV0638 NC_010645.1 663516 664322 R esterase complement(663516..664322) Bordetella avium 197N 6264870 YP_785171.1 CDS cysD1 NC_010645.1 664322 665623 R Almost identical to BAV2830 (98.8 38d); O-acetylhomoserine sulfhydrylase complement(664322..665623) Bordetella avium 197N 6264871 YP_785172.1 CDS BAV0640 NC_010645.1 665994 667391 R chloride-channel protein complement(665994..667391) Bordetella avium 197N 6266840 YP_785173.1 CDS BAV0641 NC_010645.1 667620 667859 R lipoprotein complement(667620..667859) Bordetella avium 197N 6264872 YP_785174.1 CDS BAV0642 NC_010645.1 668074 668853 R short chain dehydrogenase/reductase complement(668074..668853) Bordetella avium 197N 6264873 YP_785175.1 CDS BAV0643 NC_010645.1 668850 669860 R ABC transporter substrate binding protein complement(668850..669860) Bordetella avium 197N 6264874 YP_785176.1 CDS BAV0644 NC_010645.1 669857 670633 R ABC transporter permease complement(669857..670633) Bordetella avium 197N 6264875 YP_785177.1 CDS BAV0645 NC_010645.1 670630 671370 R ABC transporter ATP-binding protein complement(670630..671370) Bordetella avium 197N 6264876 YP_785178.1 CDS BAV0646 NC_010645.1 671367 672830 R acyl-CoA reductase complement(671367..672830) Bordetella avium 197N 6264877 YP_785179.1 CDS BAV0647 NC_010645.1 672827 673933 R acyl-protein synthetase complement(672827..673933) Bordetella avium 197N 6264878 YP_785180.1 CDS rimJ NC_010645.1 674113 674697 D ribosomal-protein-alanine acetyltransferase 674113..674697 Bordetella avium 197N 6264879 YP_785181.1 CDS kdgT NC_010645.1 <674920 675945 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease <674920..675945 Bordetella avium 197N 6267659 YP_785182.1 CDS BAV0650 NC_010645.1 <675942 677156 D hypothetical protein <675942..677156 Bordetella avium 197N 6267263 YP_785183.1 CDS pdxA1 NC_010645.1 677153 678199 D Also similar to BAV2168, (48.318 38d.); 4-hydroxythreonine-4-phosphate dehydrogenase 677153..678199 Bordetella avium 197N 6264880 YP_785184.1 CDS BAV0652 NC_010645.1 678208 679113 D GntR family transcriptional regulator 678208..679113 Bordetella avium 197N 6267493 YP_785185.1 CDS BAV0653 NC_010645.1 679312 680046 R GntR family transcriptional regulator complement(679312..680046) Bordetella avium 197N 6264881 YP_785186.1 CDS BAV0654 NC_010645.1 680253 681107 D hydrolase 680253..681107 Bordetella avium 197N 6264882 YP_785187.1 CDS BAV0655 NC_010645.1 681107 682102 D cyclodeaminase 681107..682102 Bordetella avium 197N 6264883 YP_785188.1 CDS BAV0656 NC_010645.1 682161 683261 D dioxygenase 682161..683261 Bordetella avium 197N 6264884 YP_785189.1 CDS BAV0657 NC_010645.1 683276 683773 D oxygenase small subunit 683276..683773 Bordetella avium 197N 6264885 YP_785190.1 CDS BAV0658 NC_010645.1 683788 685077 D oxygenase large subunit 683788..685077 Bordetella avium 197N 6264886 YP_785191.1 CDS BAV0659 NC_010645.1 685080 685409 D ferredoxin 685080..685409 Bordetella avium 197N 6264887 YP_785192.1 CDS BAV0660 NC_010645.1 685406 686632 D ferredoxin reductase 685406..686632 Bordetella avium 197N 6264888 YP_785193.1 CDS BAV0661 NC_010645.1 686629 687042 D hypothetical protein 686629..687042 Bordetella avium 197N 6264889 YP_785194.1 CDS hpaH NC_010645.1 687073 687879 D 2-oxo-hept-3-ene-1,7-dioate hydratase 687073..687879 Bordetella avium 197N 6264890 YP_785195.1 CDS hpaI NC_010645.1 687885 688682 D 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 687885..688682 Bordetella avium 197N 6267199 YP_785196.1 CDS BAV0664 NC_010645.1 688765 689742 D hypothetical protein 688765..689742 Bordetella avium 197N 6267201 YP_785197.1 CDS BAV0665 NC_010645.1 689881 690249 R hypothetical protein complement(689881..690249) Bordetella avium 197N 6264891 YP_785198.1 CDS BAV0666 NC_010645.1 690258 690500 R lipoprotein complement(690258..690500) Bordetella avium 197N 6264892 YP_785199.1 CDS BAV0667 NC_010645.1 690493 690747 R hypothetical protein complement(690493..690747) Bordetella avium 197N 6264893 YP_785200.1 CDS BAV0668 NC_010645.1 690869 691783 R LysR family transcriptional regulator complement(690869..691783) Bordetella avium 197N 6264894 YP_785201.1 CDS BAV0669 NC_010645.1 692108 693256 D pyridoxal phosphate binding aldolase 692108..693256 Bordetella avium 197N 6264895 YP_785202.1 CDS BAV0669A NC_010645.1 693262 693345 D hypothetical protein 693262..693345 Bordetella avium 197N 6264896 YP_785203.1 CDS dbpA NC_010645.1 <693530 694918 D exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA <693530..694918 Bordetella avium 197N 6264897 YP_785204.1 CDS BAV0671 NC_010645.1 695002 695520 D acetyltransferase 695002..695520 Bordetella avium 197N 6266863 YP_785205.1 CDS BAV0672 NC_010645.1 695563 696552 R D-isomer specific 2-hydroxyacid dehydrogenase complement(695563..696552) Bordetella avium 197N 6264898 YP_785206.1 CDS BAV0673 NC_010645.1 696552 697478 R LysR family transcriptional regulator complement(696552..697478) Bordetella avium 197N 6264899 YP_785207.1 CDS BAV0674 NC_010645.1 697722 698723 D N-carbamoyl-D-amino acid hydrolase 697722..698723 Bordetella avium 197N 6264900 YP_785208.1 CDS BAV0675 NC_010645.1 698784 699701 R LysR family transcriptional regulator complement(698784..699701) Bordetella avium 197N 6264901 YP_785209.1 CDS BAV0676 NC_010645.1 699942 701441 D catalyzes the hydrolytic cleavage of imides that range from linear to heterocyclic and that include hydantoins, dihydropyrimidines, and phthalimides; dihydropyrimidinase 699942..701441 Bordetella avium 197N 6264902 YP_785210.1 CDS BAV0677 NC_010645.1 701489 702343 D amino acid ABC transporter solute-binding protein 701489..702343 Bordetella avium 197N 6264903 YP_785211.1 CDS BAV0678 NC_010645.1 702363 703115 D amino acid ABC transporter ATP-binding protein 702363..703115 Bordetella avium 197N 6264904 YP_785212.1 CDS BAV0679 NC_010645.1 703115 703792 D amino acid ABC transporter permease 703115..703792 Bordetella avium 197N 6264905 YP_785213.1 CDS BAV0680 NC_010645.1 703803 704471 D amino acid ABC transporter permease 703803..704471 Bordetella avium 197N 6264906 YP_785214.1 CDS BAV0681 NC_010645.1 704562 705506 D dihydrodipicolinate synthase 704562..705506 Bordetella avium 197N 6264907 YP_785215.1 CDS BAV0682 NC_010645.1 705530 706186 D hydantoin racemase 705530..706186 Bordetella avium 197N 6264908 YP_785216.1 CDS BAV0683 NC_010645.1 <706180 707616 D FAD dependent oxidase <706180..707616 Bordetella avium 197N 6264909 YP_785217.1 CDS BAV0684 NC_010645.1 707641 708426 D short chain dehydrogenase 707641..708426 Bordetella avium 197N 6264910 YP_785218.1 CDS BAV0685 NC_010645.1 708536 >709150 R amino acid efflux protein complement(708536..>709150) Bordetella avium 197N 6264911 YP_785219.1 CDS BAV0686 NC_010645.1 709267 709719 D AsnC/Lrp family transcriptional regulator 709267..709719 Bordetella avium 197N 6264912 YP_785220.1 CDS tam NC_010645.1 709931 710704 D trans-aconitate 2-methyltransferase 709931..710704 Bordetella avium 197N 6264913 YP_785221.1 CDS tas NC_010645.1 710708 711757 R NADP(H)-dependent aldo-keto reductase complement(710708..711757) Bordetella avium 197N 6267787 YP_785222.1 CDS BAV0689 NC_010645.1 711888 712283 R lipoprotein complement(711888..712283) Bordetella avium 197N 6267788 YP_785223.1 CDS phhB NC_010645.1 712433 712759 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 712433..712759 Bordetella avium 197N 6264914 YP_785224.1 CDS BAV0691 NC_010645.1 712762 713487 R membrane protein complement(712762..713487) Bordetella avium 197N 6264915 YP_785225.1 CDS BAV0692 NC_010645.1 713630 714304 R nucleotidyl transferase complement(713630..714304) Bordetella avium 197N 6264916 YP_785226.1 CDS BAV0693 NC_010645.1 714304 715335 R hypothetical protein complement(714304..715335) Bordetella avium 197N 6264917 YP_785227.1 CDS imp NC_010645.1 <715508 717901 D organic solvent tolerance protein <715508..717901 Bordetella avium 197N 6264918 YP_785228.1 CDS surA NC_010645.1 717898 719418 D peptidyl-prolyl cis-trans isomerase 717898..719418 Bordetella avium 197N 6267243 YP_785229.1 CDS ksgA NC_010645.1 719433 720221 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 719433..720221 Bordetella avium 197N 6267783 YP_785230.1 CDS garK NC_010645.1 720429 >721574 R glycerate kinase complement(720429..>721574) Bordetella avium 197N 6267277 YP_785231.1 CDS pykA NC_010645.1 721667 723109 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 721667..723109 Bordetella avium 197N 6267053 YP_785232.1 CDS BAV0699 NC_010645.1 723117 724346 R transporter complement(723117..724346) Bordetella avium 197N 6267606 YP_785233.1 CDS def NC_010645.1 724490 725023 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(724490..725023) Bordetella avium 197N 6264919 YP_785234.1 CDS gloA NC_010645.1 725209 725604 R lactoylglutathione lyase complement(725209..725604) Bordetella avium 197N 6266875 YP_785235.1 CDS citB NC_010645.1 725715 726869 R citrate utilization protein B complement(725715..726869) Bordetella avium 197N 6267091 YP_785236.1 CDS BAV0703 NC_010645.1 726859 728259 R catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase complement(726859..728259) Bordetella avium 197N 6266787 YP_785237.1 CDS BAV0704 NC_010645.1 728338 729258 R LysR family transcriptional regulator complement(728338..729258) Bordetella avium 197N 6264920 YP_785238.1 CDS BAV0705 NC_010645.1 729263 730108 R hypothetical protein complement(729263..730108) Bordetella avium 197N 6264921 YP_785239.1 CDS BAV0706 NC_010645.1 730095 730823 R 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha complement(730095..730823) Bordetella avium 197N 6264922 YP_785240.1 CDS BAV0707 NC_010645.1 730827 >731366 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(730827..>731366) Bordetella avium 197N 6264923 YP_785241.1 CDS glyS NC_010645.1 731363 733498 R glycyl-tRNA synthetase beta chain complement(731363..733498) Bordetella avium 197N 6264924 YP_785242.1 CDS glyQ NC_010645.1 733500 734405 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(733500..734405) Bordetella avium 197N 6267103 YP_785243.1 CDS caiD NC_010645.1 734648 735415 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 734648..735415 Bordetella avium 197N 6267102 YP_785244.1 CDS fumA NC_010645.1 735483 737003 D fumarate hydratase 735483..737003 Bordetella avium 197N 6266752 YP_785245.1 CDS BAV0712 NC_010645.1 737114 747058 R adhesin complement(737114..747058) Bordetella avium 197N 6267045 YP_785246.1 CDS BAV0713 NC_010645.1 <747370 748194 D hypothetical protein <747370..748194 Bordetella avium 197N 6264925 YP_785247.1 CDS BAV0714 NC_010645.1 748219 748455 D Partial CDS. Truncated at the N-terminal region; CoA transferase (partial) 748219..748455 Bordetella avium 197N 6264926 YP_785248.1 CDS citE NC_010645.1 748455 749279 D citrate lyase beta chain 748455..749279 Bordetella avium 197N 6264927 YP_785249.1 CDS BAV0716 NC_010645.1 749289 749804 D DedA family membrane protein 749289..749804 Bordetella avium 197N 6266788 YP_785250.1 CDS BAV0717 NC_010645.1 749918 751972 D hypothetical protein 749918..751972 Bordetella avium 197N 6264928 YP_785251.1 CDS BAV0718 NC_010645.1 752017 752613 R isochorismatase family hydrolase complement(752017..752613) Bordetella avium 197N 6264929 YP_785252.1 CDS folK NC_010645.1 752687 753160 R 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(752687..753160) Bordetella avium 197N 6264930 YP_785253.1 CDS pcnB NC_010645.1 753157 754515 R poly(A) polymerase complement(753157..754515) Bordetella avium 197N 6267028 YP_785254.1 CDS BAV0721 NC_010645.1 754515 755213 R hypothetical protein complement(754515..755213) Bordetella avium 197N 6267492 YP_785255.1 CDS BAV0722 NC_010645.1 755210 755899 R DnaA regulatory inactivator Hda complement(755210..755899) Bordetella avium 197N 6264931 YP_785256.1 CDS purG NC_010645.1 756176 757225 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 756176..757225 Bordetella avium 197N 6264932 YP_785257.1 CDS miaA NC_010645.1 757271 758209 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(757271..758209) Bordetella avium 197N 6267599 YP_785258.1 CDS mutL NC_010645.1 758212 760077 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(758212..760077) Bordetella avium 197N 6267351 YP_785259.1 CDS dedA NC_010645.1 760185 760820 D membrane protein 760185..760820 Bordetella avium 197N 6267405 YP_785260.1 CDS BAV0727 NC_010645.1 760909 761829 R transporter complement(760909..761829) Bordetella avium 197N 6266872 YP_785261.1 CDS poxB NC_010645.1 761926 763659 R pyruvate dehydrogenase (cytochrome) complement(761926..763659) Bordetella avium 197N 6264933 YP_785262.1 CDS mqo NC_010645.1 763667 765169 R malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase complement(763667..765169) Bordetella avium 197N 6267556 YP_785263.1 CDS BAV0730 NC_010645.1 765189 765578 R hypothetical protein complement(765189..765578) Bordetella avium 197N 6267380 YP_785264.1 CDS amiC NC_010645.1 766474 >767733 R N-acetylmuramoyl-L-alanine amidase complement(766474..>767733) Bordetella avium 197N 6264934 YP_785265.1 CDS BAV0732 NC_010645.1 767766 768299 R hypothetical protein complement(767766..768299) Bordetella avium 197N 6266619 YP_785266.1 CDS fumC NC_010645.1 768444 769832 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 768444..769832 Bordetella avium 197N 6264935 YP_785267.1 CDS BAV0734 NC_010645.1 769872 770771 R transporter complement(769872..770771) Bordetella avium 197N 6267046 YP_785268.1 CDS BAV0735 NC_010645.1 770989 771966 D hypothetical protein 770989..771966 Bordetella avium 197N 6264936 YP_785269.1 CDS BAV0736 NC_010645.1 772086 772628 D N-acetyltransferase 772086..772628 Bordetella avium 197N 6264937 YP_785270.1 CDS BAV0737 NC_010645.1 772684 773382 R hypothetical protein complement(772684..773382) Bordetella avium 197N 6264938 YP_785271.1 CDS BAV0738 NC_010645.1 <774015 774566 D hypothetical protein <774015..774566 Bordetella avium 197N 6264939 YP_785272.1 CDS BAV0739 NC_010645.1 774572 775360 D ABC transporter ATP-binding protein 774572..775360 Bordetella avium 197N 6264940 YP_785273.1 CDS BAV0740 NC_010645.1 775357 776184 D ABC transporter permease 775357..776184 Bordetella avium 197N 6264941 YP_785274.1 CDS BAV0741 NC_010645.1 776197 777156 D ABC transporter substrate-binding protein 776197..777156 Bordetella avium 197N 6264942 YP_785275.1 CDS BAV0742 NC_010645.1 <777222 778040 D hydrolase <777222..778040 Bordetella avium 197N 6264943 YP_785276.1 CDS mipA NC_010645.1 778229 778993 D MltA-interacting scaffolding protein 778229..778993 Bordetella avium 197N 6264944 YP_785277.1 CDS BAV0744 NC_010645.1 779252 779851 D hypothetical protein 779252..779851 Bordetella avium 197N 6267357 YP_785278.1 CDS BAV0745 NC_010645.1 779948 780826 R glutathione S-transferase complement(779948..780826) Bordetella avium 197N 6264945 YP_785279.1 CDS ilvE NC_010645.1 781135 782229 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 781135..782229 Bordetella avium 197N 6264946 YP_785280.1 CDS BAV0747 NC_010645.1 782359 783543 R membrane protein complement(782359..783543) Bordetella avium 197N 6267238 YP_785281.1 CDS BAV0748 NC_010645.1 783593 784171 D flavoredoxin 783593..784171 Bordetella avium 197N 6264947 YP_785282.1 CDS BAV0749 NC_010645.1 784226 >784789 R hypothetical protein complement(784226..>784789) Bordetella avium 197N 6264948 YP_785283.1 CDS BAV0750 NC_010645.1 784782 785432 R hypothetical protein complement(784782..785432) Bordetella avium 197N 6264949 YP_785284.1 CDS BAV0751 NC_010645.1 785429 788620 R membrane protein complement(785429..788620) Bordetella avium 197N 6264950 YP_785285.1 CDS BAV0752 NC_010645.1 788617 789312 R hypothetical protein complement(788617..789312) Bordetella avium 197N 6264951 YP_785286.1 CDS BAV0753 NC_010645.1 789529 791109 D methyl-accepting chemotaxis protein 789529..791109 Bordetella avium 197N 6264952 YP_785287.1 CDS BAV0754 NC_010645.1 791115 791492 R hypothetical protein complement(791115..791492) Bordetella avium 197N 6264953 YP_785288.1 CDS BAV0755 NC_010645.1 791843 793657 D ABC transporter ATP-binding protein 791843..793657 Bordetella avium 197N 6264954 YP_785289.1 CDS BAV0756 NC_010645.1 793740 794813 D choloylglycine hydrolase 793740..794813 Bordetella avium 197N 6264955 YP_785290.1 CDS cadR NC_010645.1 794898 796397 D lysine-specific permease 794898..796397 Bordetella avium 197N 6264956 YP_785291.1 CDS BAV0758 NC_010645.1 796614 796886 R hypothetical protein complement(796614..796886) Bordetella avium 197N 6266750 YP_785292.1 CDS BAV0761 NC_010645.1 798697 800025 D hypothetical protein 798697..800025 Bordetella avium 197N 6264959 YP_785293.1 CDS BAV0762 NC_010645.1 800180 800680 R GnaT family acetyltransferase complement(800180..800680) Bordetella avium 197N 6264960 YP_785294.1 CDS BAV0763 NC_010645.1 800814 801689 R LysR family transcriptional regulator complement(800814..801689) Bordetella avium 197N 6264961 YP_785295.1 CDS argC NC_010645.1 801792 802700 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 801792..802700 Bordetella avium 197N 6264962 YP_785296.1 CDS BAV0765 NC_010645.1 802707 803882 R hypothetical protein complement(802707..803882) Bordetella avium 197N 6266643 YP_785297.1 CDS BAV0766 NC_010645.1 803980 805140 R membrane-associated phosphoesterase complement(803980..805140) Bordetella avium 197N 6264963 YP_785298.1 CDS BAV0767 NC_010645.1 805238 805546 D hypothetical protein 805238..805546 Bordetella avium 197N 6264964 YP_785299.1 CDS BAV0768 NC_010645.1 805550 805999 R GnaT family acetyltransferase complement(805550..805999) Bordetella avium 197N 6264965 YP_785300.1 CDS BAV0769 NC_010645.1 806083 807402 R transporter complement(806083..807402) Bordetella avium 197N 6264966 YP_785301.1 CDS BAV0770 NC_010645.1 807403 808776 R permease complement(807403..808776) Bordetella avium 197N 6264967 YP_785302.1 CDS BAV0771 NC_010645.1 809036 809650 D glutathione S-transferase 809036..809650 Bordetella avium 197N 6264968 YP_785303.1 CDS BAV0772 NC_010645.1 809647 810729 R 2-nitropropane dioxygenase complement(809647..810729) Bordetella avium 197N 6264969 YP_785304.1 CDS BAV0773 NC_010645.1 810746 811597 R LysR family transcriptional regulator complement(810746..811597) Bordetella avium 197N 6264970 YP_785305.1 CDS add NC_010645.1 811738 812688 D catalyzes the formation of inosine from adenosine; adenosine deaminase 811738..812688 Bordetella avium 197N 6264971 YP_785306.1 CDS BAV0775 NC_010645.1 812948 814447 D extracellular solute-binding protein 812948..814447 Bordetella avium 197N 6266599 YP_785307.1 CDS ggt NC_010645.1 814450 816258 D gamma-glutamyltranspeptidase 814450..816258 Bordetella avium 197N 6264972 YP_785308.1 CDS BAV0777 NC_010645.1 816266 816664 D hypothetical protein 816266..816664 Bordetella avium 197N 6267065 YP_785309.1 CDS BAV0778 NC_010645.1 816661 817101 R GnaT family acetyltransferase complement(816661..817101) Bordetella avium 197N 6264973 YP_785310.1 CDS BAV0779 NC_010645.1 817292 817843 R bacterioferritin complement(817292..817843) Bordetella avium 197N 6264974 YP_785311.1 CDS BAV0780 NC_010645.1 818067 818282 D hypothetical protein 818067..818282 Bordetella avium 197N 6264975 YP_785312.1 CDS BAV0781 NC_010645.1 818456 818950 D hypothetical protein 818456..818950 Bordetella avium 197N 6264976 YP_785313.1 CDS BAV0782 NC_010645.1 819241 820440 D two component system sensor kinase 819241..820440 Bordetella avium 197N 6264977 YP_785314.1 CDS BAV0783 NC_010645.1 820533 821090 D two component system response regulator 820533..821090 Bordetella avium 197N 6264978 YP_785315.1 CDS cyoA NC_010645.1 <821360 822268 D ubiquinol oxidase polypeptide II <821360..822268 Bordetella avium 197N 6264979 YP_785316.1 CDS cyoB NC_010645.1 822269 824248 D ubiquinol oxidase polypeptide I 822269..824248 Bordetella avium 197N 6266834 YP_785317.1 CDS cyoC NC_010645.1 824255 824869 D cytochrome O ubiquinol oxidase subunit III 824255..824869 Bordetella avium 197N 6266835 YP_785318.1 CDS cyoD NC_010645.1 824869 825210 D cytochrome O ubiquinol oxidase subunit IV 824869..825210 Bordetella avium 197N 6266836 YP_785319.1 CDS BAV0788 NC_010645.1 825287 826249 R hypothetical protein complement(825287..826249) Bordetella avium 197N 6266837 YP_785320.1 CDS BAV0789 NC_010645.1 826632 828014 D chemotaxis sensory transducer 826632..828014 Bordetella avium 197N 6264980 YP_785321.1 CDS BAV0790 NC_010645.1 828090 828842 D cell wall degrading peptidase 828090..828842 Bordetella avium 197N 6264981 YP_785322.1 CDS BAV0791 NC_010645.1 828899 829381 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 828899..829381 Bordetella avium 197N 6264982 YP_785323.1 CDS BAV0792 NC_010645.1 829419 >830582 R membrane protein complement(829419..>830582) Bordetella avium 197N 6264983 YP_785324.1 CDS BAV0793 NC_010645.1 830625 831122 R lipoprotein complement(830625..831122) Bordetella avium 197N 6264984 YP_785325.1 CDS BAV0794 NC_010645.1 831119 831856 R lipoprotein complement(831119..831856) Bordetella avium 197N 6264985 YP_785326.1 CDS BAV0795 NC_010645.1 831874 >833439 R hypothetical protein complement(831874..>833439) Bordetella avium 197N 6264986 YP_785327.1 CDS BAV0796 NC_010645.1 833429 834628 R ABC transporter transmembrane protein complement(833429..834628) Bordetella avium 197N 6264987 YP_785328.1 CDS BAV0797 NC_010645.1 834625 835311 R ABC transporter ATP-binding protein complement(834625..835311) Bordetella avium 197N 6264988 YP_785329.1 CDS BAV0798 NC_010645.1 835324 >837297 R hypothetical protein complement(835324..>837297) Bordetella avium 197N 6264989 YP_785330.1 CDS BAV0799 NC_010645.1 837294 838241 R membrane protein complement(837294..838241) Bordetella avium 197N 6264990 YP_785331.1 CDS srfC NC_010645.1 838251 840941 R virulence factor complement(838251..840941) Bordetella avium 197N 6264991 YP_785332.1 CDS srfB NC_010645.1 840947 844048 R virulence factor complement(840947..844048) Bordetella avium 197N 6267770 YP_785333.1 CDS BAV0804 NC_010645.1 845805 847622 D catalyzes the hydrolysis of allophanate; allophanate hydrolase 845805..847622 Bordetella avium 197N 6267768 YP_785334.1 CDS BAV0805 NC_010645.1 847715 848089 D hypothetical protein 847715..848089 Bordetella avium 197N 6264992 YP_785335.1 CDS BAV0806 NC_010645.1 848102 848626 D ECF sigma factor 848102..848626 Bordetella avium 197N 6264993 YP_785336.1 CDS BAV0807 NC_010645.1 848623 849420 D transmembrane regulator 848623..849420 Bordetella avium 197N 6264994 YP_785337.1 CDS BAV0808 NC_010645.1 849430 850134 R 3-oxoacyl-[acyl-carrier-protein] reductase complement(849430..850134) Bordetella avium 197N 6264995 YP_785338.1 CDS BAV0809 NC_010645.1 850196 851044 R membrane protein complement(850196..851044) Bordetella avium 197N 6264996 YP_785339.1 CDS BAV0810 NC_010645.1 <851210 851389 D hypothetical protein join(<851210..>851281,851285..851389) Bordetella avium 197N 6264997 YP_785340.1 CDS BAV0811 NC_010645.1 851609 854149 R autotransporter complement(851609..854149) Bordetella avium 197N 6264998 YP_785341.1 CDS BAV0812 NC_010645.1 854262 854597 R hypothetical protein complement(854262..854597) Bordetella avium 197N 6264999 YP_785342.1 CDS BAV0813 NC_010645.1 854818 855957 R hypothetical protein complement(854818..855957) Bordetella avium 197N 6265000 YP_785343.1 CDS fdsD NC_010645.1 855987 856247 R NAD-dependent formate dehydrogenase subunit delta complement(855987..856247) Bordetella avium 197N 6265001 YP_785344.1 CDS fdhD NC_010645.1 856272 857087 R involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein complement(856272..857087) Bordetella avium 197N 6266964 YP_785345.1 CDS fdhF NC_010645.1 857106 859967 R NAD-dependent formate dehydrogenase subunit alpha complement(857106..859967) Bordetella avium 197N 6266957 YP_785346.1 CDS fdsB NC_010645.1 859979 861535 R NAD-dependent formate dehydrogenase subunit beta complement(859979..861535) Bordetella avium 197N 6266959 YP_785347.1 CDS fdsG NC_010645.1 861532 861999 R catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma complement(861532..861999) Bordetella avium 197N 6266963 YP_785348.1 CDS BAV0819 NC_010645.1 862127 863203 D molybdenum-binding protein 862127..863203 Bordetella avium 197N 6266965 YP_785349.1 CDS moaA NC_010645.1 863232 864314 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 863232..864314 Bordetella avium 197N 6265002 YP_785350.1 CDS chlB NC_010645.1 <864307 864891 D molybdopterin-guanine dinucleotide biosynthesis protein A <864307..864891 Bordetella avium 197N 6267366 YP_785351.1 CDS moeA NC_010645.1 864888 866087 R molybdopterin cofactor biosynthesis protein complement(864888..866087) Bordetella avium 197N 6266784 YP_785352.1 CDS moaB NC_010645.1 866084 866602 R molybdenum cofactor biosynthesis protein B complement(866084..866602) Bordetella avium 197N 6267375 YP_785353.1 CDS moaE NC_010645.1 866599 867069 R molybdopterin converting factor subunit 2; molybdopterin converting factor large subunit complement(866599..867069) Bordetella avium 197N 6267367 YP_785354.1 CDS moaD NC_010645.1 867072 >867323 R molybdopterin converting factor small subunit complement(867072..>867323) Bordetella avium 197N 6267370 YP_785355.1 CDS moaC NC_010645.1 867304 867792 R molybdenum cofactor biosynthesis protein C complement(867304..867792) Bordetella avium 197N 6267369 YP_785356.1 CDS BAV0827 NC_010645.1 867913 871374 D hypothetical protein 867913..871374 Bordetella avium 197N 6267368 YP_785357.1 CDS BAV0828 NC_010645.1 871508 872011 D antioxidant 871508..872011 Bordetella avium 197N 6265003 YP_785358.1 CDS BAV0829 NC_010645.1 872069 873385 D transporter 872069..873385 Bordetella avium 197N 6265004 YP_785359.1 CDS BAV0830 NC_010645.1 873387 874235 R membrane protein complement(873387..874235) Bordetella avium 197N 6265005 YP_785360.1 CDS bioB NC_010645.1 874232 875203 R biotin synthase complement(874232..875203) Bordetella avium 197N 6265006 YP_785361.1 CDS BAV0832 NC_010645.1 875693 875998 D Seems to be unique to Bordetellae. Similar to members of a family of exported proteins in the Bordetellae.; hypothetical protein 875693..875998 Bordetella avium 197N 6266714 YP_785362.1 CDS BAV0833 NC_010645.1 876082 876657 D TetR family transcriptional regulator 876082..876657 Bordetella avium 197N 6265007 YP_785363.1 CDS BAV0834 NC_010645.1 877711 878472 R membrane-associated phospholipid phosphatase complement(877711..878472) Bordetella avium 197N 6267835 YP_785364.1 CDS BAV0835 NC_010645.1 878649 880076 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 878649..880076 Bordetella avium 197N 6265009 YP_785365.1 CDS BAV0836 NC_010645.1 880073 881095 D PhoH-like protein 880073..881095 Bordetella avium 197N 6265010 YP_785366.1 CDS BAV0837 NC_010645.1 881092 881577 D putative metalloprotease 881092..881577 Bordetella avium 197N 6265011 YP_785367.1 CDS corC NC_010645.1 881703 882575 D magnesium and cobalt efflux protein 881703..882575 Bordetella avium 197N 6265012 YP_785368.1 CDS lnt NC_010645.1 <882572 884164 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase <882572..884164 Bordetella avium 197N 6266803 YP_785369.1 CDS BAV0840 NC_010645.1 884170 885162 R aldo/keto reductase complement(884170..885162) Bordetella avium 197N 6266821 YP_785370.1 CDS secF NC_010645.1 885879 886814 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(885879..886814) Bordetella avium 197N 6267848 YP_785371.1 CDS secD NC_010645.1 886881 888761 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(886881..888761) Bordetella avium 197N 6267749 YP_785372.1 CDS BAV0843 NC_010645.1 888825 889166 R preprotein translocase subunit YajC complement(888825..889166) Bordetella avium 197N 6267748 YP_785373.1 CDS tgt NC_010645.1 889310 890446 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(889310..890446) Bordetella avium 197N 6265014 YP_785374.1 CDS queA NC_010645.1 890443 >891483 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(890443..>891483) Bordetella avium 197N 6267797 YP_785375.1 CDS BAV0846 NC_010645.1 891636 893087 D D-alanyl-D-alanine carboxypeptidase 891636..893087 Bordetella avium 197N 6267618 YP_785376.1 CDS upp NC_010645.1 893144 893782 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 893144..893782 Bordetella avium 197N 6265015 YP_785377.1 CDS cysG NC_010645.1 893788 895212 R siroheme synthase includes uroporphyrin-iii c-methyltransferase/precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase complement(893788..895212) Bordetella avium 197N 6267920 YP_785378.1 CDS BAV0849 NC_010645.1 895613 896326 D hypothetical protein 895613..896326 Bordetella avium 197N 6266842 YP_785379.1 CDS BAV0850 NC_010645.1 896410 896727 D membrane protein 896410..896727 Bordetella avium 197N 6265016 YP_785380.1 CDS BAV0851 NC_010645.1 896784 897197 D membrane protein 896784..897197 Bordetella avium 197N 6265017 YP_785381.1 CDS BAV0852 NC_010645.1 897197 897553 D hypothetical protein 897197..897553 Bordetella avium 197N 6265018 YP_785382.1 CDS BAV0853 NC_010645.1 897603 898391 R lipoprotein complement(897603..898391) Bordetella avium 197N 6265019 YP_785383.1 CDS ubiD NC_010645.1 898553 >900097 R 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(898553..>900097) Bordetella avium 197N 6265020 YP_785384.1 CDS BAV0855 NC_010645.1 900183 901007 D lytic transglycosylase 900183..901007 Bordetella avium 197N 6267910 YP_785385.1 CDS BAV0856 NC_010645.1 901018 903261 R adhesin complement(901018..903261) Bordetella avium 197N 6265021 YP_785386.1 CDS BAV0857 NC_010645.1 903391 904545 R aminotransferase complement(903391..904545) Bordetella avium 197N 6265022 YP_785387.1 CDS BAV0858 NC_010645.1 904579 905274 D . Seems to be unique to Bordetellae; hypothetical protein 904579..905274 Bordetella avium 197N 6265023 YP_785388.1 CDS maeB1 NC_010645.1 905419 907764 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 905419..907764 Bordetella avium 197N 6265024 YP_785389.1 CDS BAV0860 NC_010645.1 907745 908944 D lipid acyl hydrolase 907745..908944 Bordetella avium 197N 6267324 YP_785390.1 CDS BAV0861 NC_010645.1 908941 909405 D ribonuclease inhibitor 908941..909405 Bordetella avium 197N 6265025 YP_785391.1 CDS BAV0862 NC_010645.1 909432 910166 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(909432..910166) Bordetella avium 197N 6265026 YP_785392.1 CDS tkt NC_010645.1 910378 912417 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 910378..912417 Bordetella avium 197N 6265027 YP_785393.1 CDS gap NC_010645.1 912434 913444 D glyceraldehyde-3-phosphate dehydrogenase 912434..913444 Bordetella avium 197N 6267812 YP_785394.1 CDS pgk NC_010645.1 913555 914748 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 913555..914748 Bordetella avium 197N 6267052 YP_785395.1 CDS BAV0866 NC_010645.1 914840 916525 D sulfate transporter 914840..916525 Bordetella avium 197N 6267507 YP_785396.1 CDS envM NC_010645.1 916510 917280 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(916510..917280) Bordetella avium 197N 6265028 YP_785397.1 CDS ackA NC_010645.1 917277 918464 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(917277..918464) Bordetella avium 197N 6266928 YP_785398.1 CDS pta NC_010645.1 918461 919399 R catalyzes the formation of acetyl phosphate from acetyl-CoA and phosphate; can also act with other short-chain acyl-CoAs; phosphate acetyltransferase complement(918461..919399) Bordetella avium 197N 6266582 YP_785399.1 CDS BAV0871 NC_010645.1 922206 922880 R glutathione S-transferase complement(922206..922880) Bordetella avium 197N 6265029 YP_785400.1 CDS BAV0872 NC_010645.1 922938 >923423 R acetyltransferase complement(922938..>923423) Bordetella avium 197N 6265030 YP_785401.1 CDS cbpA NC_010645.1 923587 924525 D curved DNA-binding protein 923587..924525 Bordetella avium 197N 6265031 YP_785402.1 CDS BAV0874 NC_010645.1 924528 924842 D hypothetical protein 924528..924842 Bordetella avium 197N 6266765 YP_785403.1 CDS BAV0875 NC_010645.1 924893 925591 D membrane protein 924893..925591 Bordetella avium 197N 6265032 YP_785404.1 CDS BAV0876 NC_010645.1 925588 925926 D membrane protein 925588..925926 Bordetella avium 197N 6265033 YP_785405.1 CDS pitA NC_010645.1 925930 927405 R low-affinity inorganic phosphate transporter complement(925930..927405) Bordetella avium 197N 6265034 YP_785406.1 CDS chlG NC_010645.1 927520 928152 D molybdopterin biosynthesis protein 927520..928152 Bordetella avium 197N 6267539 YP_785407.1 CDS BAV0879 NC_010645.1 928208 928546 D hypothetical protein 928208..928546 Bordetella avium 197N 6266785 YP_785408.1 CDS BAV0880 NC_010645.1 <928543 929388 D exported peptidase <928543..929388 Bordetella avium 197N 6265035 YP_785409.1 CDS BAV0881 NC_010645.1 929404 929697 R hypothetical protein complement(929404..929697) Bordetella avium 197N 6265036 YP_785410.1 CDS infA NC_010645.1 929772 930038 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(929772..930038) Bordetella avium 197N 6265037 YP_785411.1 CDS BAV0883 NC_010645.1 930388 930921 R transcriptional regulator complement(930388..930921) Bordetella avium 197N 6267245 YP_785412.1 CDS BAV0884 NC_010645.1 930999 931889 D membrane protein 930999..931889 Bordetella avium 197N 6265038 YP_785413.1 CDS BAV0885 NC_010645.1 932084 933574 R membrane protein complement(932084..933574) Bordetella avium 197N 6265039 YP_785414.1 CDS BAV0886 NC_010645.1 933571 933999 R membrane protein complement(933571..933999) Bordetella avium 197N 6265040 YP_785415.1 CDS BAV0887 NC_010645.1 934647 935099 D acetyltransferase 934647..935099 Bordetella avium 197N 6265041 YP_785416.1 CDS gltT NC_010645.1 935142 936419 R proton/sodium-glutamate symport protein complement(935142..936419) Bordetella avium 197N 6265042 YP_785417.1 CDS cbbA NC_010645.1 936661 937725 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 936661..937725 Bordetella avium 197N 6267098 YP_785418.1 CDS purC NC_010645.1 <937859 938740 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase <937859..938740 Bordetella avium 197N 6266761 YP_785419.1 CDS purE NC_010645.1 938909 939430 D phosphoribosylaminoimidazole carboxylase catalytic subunit 938909..939430 Bordetella avium 197N 6267595 YP_785420.1 CDS purK NC_010645.1 939527 940705 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 939527..940705 Bordetella avium 197N 6267597 YP_785421.1 CDS BAV0893 NC_010645.1 940698 941723 D hypothetical protein 940698..941723 Bordetella avium 197N 6267601 YP_785422.1 CDS BAV0894 NC_010645.1 941851 942669 D IclR family transcriptional regulator 941851..942669 Bordetella avium 197N 6265043 YP_785423.1 CDS BAV0895 NC_010645.1 943149 944039 D agmatinase/arginase 943149..944039 Bordetella avium 197N 6265044 YP_785424.1 CDS BAV0896 NC_010645.1 944074 944859 D amino acid ABC transporter periplasmic amino acid-binding protein 944074..944859 Bordetella avium 197N 6265045 YP_785425.1 CDS BAV0898 NC_010645.1 945572 946318 D amino acid ABC transporter ATP-binding protein 945572..946318 Bordetella avium 197N 6265047 YP_785426.1 CDS BAV0899 NC_010645.1 946479 948038 D thiamine-pyrophosphate requiring enzyme; hypothetical protein 946479..948038 Bordetella avium 197N 6265048 YP_785427.1 CDS BAV0900 NC_010645.1 <948886 953850 D adhesin <948886..953850 Bordetella avium 197N 6265049 YP_785428.1 CDS gcdH NC_010645.1 954014 955207 R glutaryl-CoA dehydrogenase complement(954014..955207) Bordetella avium 197N 6265050 YP_785429.1 CDS ilvB NC_010645.1 955266 956975 R also similar to BAV1880 (52.585 38d.); thiamine pyrophosphate protein complement(955266..956975) Bordetella avium 197N 6267057 YP_785430.1 CDS BAV0903 NC_010645.1 957171 958076 D LysR family transcriptional regulator 957171..958076 Bordetella avium 197N 6267235 YP_785431.1 CDS xerD NC_010645.1 958078 959022 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 958078..959022 Bordetella avium 197N 6265051 YP_785432.1 CDS BAV0905 NC_010645.1 959033 959521 D regulatory protein 959033..959521 Bordetella avium 197N 6267944 YP_785433.1 CDS BAV0906 NC_010645.1 959584 960180 D hypothetical protein 959584..960180 Bordetella avium 197N 6265052 YP_785434.1 CDS BAV0907 NC_010645.1 960254 960613 D hypothetical protein 960254..960613 Bordetella avium 197N 6265053 YP_785435.1 CDS pbpG NC_010645.1 960624 961853 R D-alanyl-D-alanine carboxypeptidase complement(960624..961853) Bordetella avium 197N 6265054 YP_785436.1 CDS BAV0910 NC_010645.1 962214 962531 D hypothetical protein 962214..962531 Bordetella avium 197N 6267488 YP_785437.1 CDS BAV0911 NC_010645.1 963223 964416 D transporter 963223..964416 Bordetella avium 197N 6267843 YP_785438.1 CDS BAV0911A NC_010645.1 <964413 964547 D hypothetical protein <964413..964547 Bordetella avium 197N 6265056 YP_785439.1 CDS BAV0912 NC_010645.1 964599 967250 D hypothetical protein 964599..967250 Bordetella avium 197N 6265057 YP_785440.1 CDS BAV0913 NC_010645.1 967254 970577 D nuclease/helicase 967254..970577 Bordetella avium 197N 6265058 YP_785441.1 CDS dnaX NC_010645.1 970932 972872 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 970932..972872 Bordetella avium 197N 6267952 YP_785442.1 CDS BAV0915 NC_010645.1 972910 973236 D hypothetical protein 972910..973236 Bordetella avium 197N 6266898 YP_785443.1 CDS recR NC_010645.1 973256 973864 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 973256..973864 Bordetella avium 197N 6265060 YP_785444.1 CDS BAV0917 NC_010645.1 973951 974847 R beta-hydroxylase complement(973951..974847) Bordetella avium 197N 6267632 YP_785445.1 CDS carB NC_010645.1 974902 978141 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(974902..978141) Bordetella avium 197N 6265061 YP_785446.1 CDS carA NC_010645.1 978152 >979306 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(978152..>979306) Bordetella avium 197N 6266756 YP_785447.1 CDS talB NC_010645.1 979513 980472 D transaldolase B 979513..980472 Bordetella avium 197N 6266755 YP_785448.1 CDS gpmB NC_010645.1 980502 981140 R phosphoglycerate mutase 2 complement(980502..981140) Bordetella avium 197N 6267786 YP_785449.1 CDS BAV0922 NC_010645.1 981133 982041 R LysR family transcriptional regulator complement(981133..982041) Bordetella avium 197N 6267111 YP_785450.1 CDS BAV0923 NC_010645.1 982062 983147 R ABC transporter ATP-binding protein complement(982062..983147) Bordetella avium 197N 6265062 YP_785451.1 CDS BAV0924 NC_010645.1 983151 984848 R ABC transporter permease complement(983151..984848) Bordetella avium 197N 6265063 YP_785452.1 CDS BAV0925 NC_010645.1 984916 986238 R ABC transporter substrate-binding protein complement(984916..986238) Bordetella avium 197N 6265064 YP_785453.1 CDS BAV0926 NC_010645.1 986324 986614 R hypothetical protein complement(986324..986614) Bordetella avium 197N 6265065 YP_785454.1 CDS pyrP NC_010645.1 986747 988063 D uracil permease 986747..988063 Bordetella avium 197N 6265066 YP_785455.1 CDS greA NC_010645.1 988661 989137 D transcription elongation factor 988661..989137 Bordetella avium 197N 6267616 YP_785456.1 CDS BAV0929 NC_010645.1 989315 989908 R hypothetical protein complement(989315..989908) Bordetella avium 197N 6267114 YP_785457.1 CDS ftsJ NC_010645.1 989927 990586 D ribosomal RNA large subunit methyltransferase j 989927..990586 Bordetella avium 197N 6265067 YP_785458.1 CDS ftsH NC_010645.1 990738 992621 D cell division protein 990738..992621 Bordetella avium 197N 6267037 YP_785459.1 CDS dhpS NC_010645.1 992638 993474 D dihydropteroate synthase 992638..993474 Bordetella avium 197N 6267035 YP_785460.1 CDS glmM NC_010645.1 993471 994814 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 993471..994814 Bordetella avium 197N 6266879 YP_785461.1 CDS BAV0934 NC_010645.1 995001 995816 D hypothetical protein 995001..995816 Bordetella avium 197N 6267076 YP_785462.1 CDS ppx NC_010645.1 995867 997348 R exopolyphosphatase complement(995867..997348) Bordetella avium 197N 6265068 YP_785463.1 CDS ppk NC_010645.1 997666 999741 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 997666..999741 Bordetella avium 197N 6267565 YP_785464.1 CDS phoS NC_010645.1 1010001 1011038 D phosphate ABC transporter phosphate-binding periplasmic protein 1010001..1011038 Bordetella avium 197N 6265070 YP_785465.1 CDS phoW NC_010645.1 1011170 1012183 D phosphate ABC transporter permease 1011170..1012183 Bordetella avium 197N 6267531 YP_785466.1 CDS phoT NC_010645.1 1012198 1013055 D phosphate ABC transporter permease 1012198..1013055 Bordetella avium 197N 6267535 YP_785467.1 CDS pstB NC_010645.1 1013083 1013859 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1013083..1013859 Bordetella avium 197N 6267532 YP_785468.1 CDS BAV0943 NC_010645.1 1014558 1014815 R hypothetical protein complement(1014558..1014815) Bordetella avium 197N 6267879 YP_785469.1 CDS BAV0944 NC_010645.1 1014817 1015050 R hypothetical protein complement(1014817..1015050) Bordetella avium 197N 6265071 YP_785470.1 CDS BAV0945 NC_010645.1 1015270 1016067 D GntR family transcriptional regulator 1015270..1016067 Bordetella avium 197N 6265072 YP_785471.1 CDS BAV0946 NC_010645.1 1016084 1017289 D ABC transporter substrate-binding protein 1016084..1017289 Bordetella avium 197N 6265073 YP_785472.1 CDS BAV0947 NC_010645.1 <1017292 1018164 D ABC transporter permease <1017292..1018164 Bordetella avium 197N 6265074 YP_785473.1 CDS BAV0948 NC_010645.1 1018167 1019132 D ABC transporter permease 1018167..1019132 Bordetella avium 197N 6265075 YP_785474.1 CDS BAV0949 NC_010645.1 <1019125 1019880 D ABC transporter ATP-binding protein <1019125..1019880 Bordetella avium 197N 6265076 YP_785475.1 CDS BAV0950 NC_010645.1 1019877 1020587 D ABC transporter ATP-binding protein 1019877..1020587 Bordetella avium 197N 6265077 YP_785476.1 CDS leuC1 NC_010645.1 1020590 1021858 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 1020590..1021858 Bordetella avium 197N 6265078 YP_785477.1 CDS leuD1 NC_010645.1 1021855 1022355 D 3-isopropylmalate dehydratase small subunit 1021855..1022355 Bordetella avium 197N 6267289 YP_785478.1 CDS hyuB NC_010645.1 1022366 1024036 D hydantoin utilization protein B 1022366..1024036 Bordetella avium 197N 6267291 YP_785479.1 CDS hyuA NC_010645.1 1024033 1026078 D hydantoin utilization protein A 1024033..1026078 Bordetella avium 197N 6267227 YP_785480.1 CDS BAV0955 NC_010645.1 <1026080 1026712 D isochorismatase hydrolase <1026080..1026712 Bordetella avium 197N 6267225 YP_785481.1 CDS BAV0956 NC_010645.1 <1026709 1028106 D ; Also similar to BAV3254 (29.2 38d); reductase flavoprotein subunit <1026709..1028106 Bordetella avium 197N 6265079 YP_785482.1 CDS BAV0957 NC_010645.1 1028120 1028983 D carboxyvinyl-carboxyphosphonate phosphorylmutase 1028120..1028983 Bordetella avium 197N 6265080 YP_785483.1 CDS BAV0958 NC_010645.1 1029043 1030023 R hypothetical protein complement(1029043..1030023) Bordetella avium 197N 6265081 YP_785484.1 CDS dan NC_010645.1 1030293 1031741 R D-aminoacylase complement(1030293..1031741) Bordetella avium 197N 6265082 YP_785485.1 CDS dadA1 NC_010645.1 1031767 1033062 R Also similar to BAV2005 (31.566 38d), BAV2030 (44.724 38d), BAV2366 (36.170 0d); D-amino acid dehydrogenase small subunit complement(1031767..1033062) Bordetella avium 197N 6266852 YP_785486.1 CDS BAV0961 NC_010645.1 1033066 >1034727 R acetolactate synthase large subunit complement(1033066..>1034727) Bordetella avium 197N 6266848 YP_785487.1 CDS BAV0962 NC_010645.1 1034724 1035374 R TetR family transcriptional regulator complement(1034724..1035374) Bordetella avium 197N 6265083 YP_785488.1 CDS BAV0963 NC_010645.1 1035671 1036912 R transporter complement(1035671..1036912) Bordetella avium 197N 6265084 YP_785489.1 CDS BAV0964 NC_010645.1 1036909 1038123 R amidohydrolase/peptidase complement(1036909..1038123) Bordetella avium 197N 6265085 YP_785490.1 CDS ribH NC_010645.1 1038120 1038614 R 6,7-dimethyl-8-ribityllumazine synthase complement(1038120..1038614) Bordetella avium 197N 6265086 YP_785491.1 CDS BAV0966 NC_010645.1 1038672 1040147 R permease complement(1038672..1040147) Bordetella avium 197N 6267656 YP_785492.1 CDS BAV0967 NC_010645.1 1040144 1040356 R membrane protein complement(1040144..1040356) Bordetella avium 197N 6265087 YP_785493.1 CDS gabD NC_010645.1 1040492 1041925 R succinate-semialdehyde dehydrogenase (NADP+) complement(1040492..1041925) Bordetella avium 197N 6265088 YP_785494.1 CDS hpaC NC_010645.1 1042028 1042525 R 4-hydroxyphenylacetate 3-monooxygenase,reductase component complement(1042028..1042525) Bordetella avium 197N 6267048 YP_785495.1 CDS BAV0970 NC_010645.1 1042595 1043959 R desulfurization enzyme complement(1042595..1043959) Bordetella avium 197N 6267194 YP_785496.1 CDS BAV0971 NC_010645.1 1044176 1044742 D transcriptional regulator 1044176..1044742 Bordetella avium 197N 6265089 YP_785497.1 CDS BAV0972 NC_010645.1 1045096 1045539 R hypothetical protein complement(1045096..1045539) Bordetella avium 197N 6265090 YP_785498.1 CDS BAV0973 NC_010645.1 1045648 1046025 R hypothetical protein complement(1045648..1046025) Bordetella avium 197N 6265091 YP_785499.1 CDS BAV0974 NC_010645.1 1046452 1047231 R enoyl-CoA hydratase/isomerase family protein complement(1046452..1047231) Bordetella avium 197N 6265092 YP_785500.1 CDS BAV0975 NC_010645.1 1047252 1048019 R GntR family transcriptional regulator complement(1047252..1048019) Bordetella avium 197N 6265093 YP_785501.1 CDS BAV0976 NC_010645.1 1048031 1048831 R hydrolase complement(1048031..1048831) Bordetella avium 197N 6265094 YP_785502.1 CDS BAV0977 NC_010645.1 1048834 1049205 R hypothetical protein complement(1048834..1049205) Bordetella avium 197N 6265095 YP_785503.1 CDS BAV0978 NC_010645.1 1049202 1050722 R substrate-CoA ligase complement(1049202..1050722) Bordetella avium 197N 6265096 YP_785504.1 CDS BAV0979 NC_010645.1 1050715 1051443 R ABC transporter ATP-binding protein complement(1050715..1051443) Bordetella avium 197N 6265097 YP_785505.1 CDS BAV0980 NC_010645.1 1051436 1052206 R ABC transporter ATP-binding protein complement(1051436..1052206) Bordetella avium 197N 6265098 YP_785506.1 CDS BAV0981 NC_010645.1 1052203 1053186 R ABC transporter permease complement(1052203..1053186) Bordetella avium 197N 6265099 YP_785507.1 CDS BAV0982 NC_010645.1 1053183 1054040 R ABC transporter permease complement(1053183..1054040) Bordetella avium 197N 6265100 YP_785508.1 CDS BAV0983 NC_010645.1 1054096 1055253 R ABC transporter substrate-binding protein complement(1054096..1055253) Bordetella avium 197N 6265101 YP_785509.1 CDS BAV0984 NC_010645.1 1055543 1055851 D membrane protein 1055543..1055851 Bordetella avium 197N 6265102 YP_785510.1 CDS BAV0987 NC_010645.1 1056308 1057390 R hypothetical protein complement(1056308..1057390) Bordetella avium 197N 6265103 YP_785511.1 CDS BAV0988 NC_010645.1 1057432 1058382 R hypothetical protein complement(1057432..1058382) Bordetella avium 197N 6265104 YP_785512.1 CDS BAV0989 NC_010645.1 1058481 1059419 D An insertion within codon 40 in this gene results in a mutant strain that does not produce dermonecrotic toxin and has decreased rate of attachment to turkey trachea, in vivo and in vitro.; LysR family transcriptional regulator 1058481..1059419 Bordetella avium 197N 6265105 YP_785513.1 CDS BAV0990 NC_010645.1 <1059683 1060048 D hypothetical protein <1059683..1060048 Bordetella avium 197N 6265106 YP_785514.1 CDS cydA1 NC_010645.1 <1060686 1062263 D ; Also similar to BAV3111 (54.6 38d.); cytochrome D ubiquinol oxidase subunit I <1060686..1062263 Bordetella avium 197N 6265107 YP_785515.1 CDS cydB1 NC_010645.1 1062266 1063399 D Also similar to BAV3110 (44.3 38d.); cytochrome d ubiquinol oxidase subunit II 1062266..1063399 Bordetella avium 197N 6266828 YP_785516.1 CDS BAV0993 NC_010645.1 1063410 1063616 D membrane protein 1063410..1063616 Bordetella avium 197N 6266830 YP_785517.1 CDS BAV0994 NC_010645.1 <1063683 1064183 D membrane protein <1063683..1064183 Bordetella avium 197N 6265108 YP_785518.1 CDS BAV0995 NC_010645.1 1064493 1064996 D membrane protein 1064493..1064996 Bordetella avium 197N 6265109 YP_785519.1 CDS BAV0996 NC_010645.1 1065024 1066796 R amidase complement(1065024..1066796) Bordetella avium 197N 6265110 YP_785520.1 CDS appF NC_010645.1 1066806 1067813 R oligopeptide ABC transporter ATP-binding protein complement(1066806..1067813) Bordetella avium 197N 6265111 YP_785521.1 CDS appD NC_010645.1 1067810 1068877 R oligopeptide ABC transporter ATP-binding protein complement(1067810..1068877) Bordetella avium 197N 6266636 YP_785522.1 CDS appC NC_010645.1 1068887 1069783 R oligopeptide ABC transporter permease complement(1068887..1069783) Bordetella avium 197N 6266635 YP_785523.1 CDS BAV1000 NC_010645.1 1069804 1070739 R oligopeptide ABC transporter permease complement(1069804..1070739) Bordetella avium 197N 6266634 YP_785524.1 CDS BAV1001 NC_010645.1 1070773 1072353 R oligopeptide ABC transporteroligopeptide-binding protein complement(1070773..1072353) Bordetella avium 197N 6265112 YP_785525.1 CDS BAV1002 NC_010645.1 1072402 1073841 R peptidase complement(1072402..1073841) Bordetella avium 197N 6265113 YP_785526.1 CDS BAV1003 NC_010645.1 1074163 1075452 R signaling protein complement(1074163..1075452) Bordetella avium 197N 6265114 YP_785527.1 CDS BAV1004 NC_010645.1 1075800 1076273 R hypothetical protein complement(1075800..1076273) Bordetella avium 197N 6265115 YP_785528.1 CDS BAV1005 NC_010645.1 1076399 1076728 R hypothetical protein complement(1076399..1076728) Bordetella avium 197N 6265116 YP_785529.1 CDS BAV1006 NC_010645.1 1076850 1077167 R hypothetical protein complement(1076850..1077167) Bordetella avium 197N 6265117 YP_785530.1 CDS BAV1007 NC_010645.1 1077453 1079096 R Na+/H+ antiporter complement(1077453..1079096) Bordetella avium 197N 6265118 YP_785531.1 CDS BAV1008 NC_010645.1 1079093 1080574 R multidrug efflux pump complement(1079093..1080574) Bordetella avium 197N 6265119 YP_785532.1 CDS BAV1009 NC_010645.1 1080564 1082453 R component of efflux pump complement(1080564..1082453) Bordetella avium 197N 6265120 YP_785533.1 CDS BAV1010 NC_010645.1 1082440 1083492 R with MdtO and MdtP is involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance protein MdtN complement(1082440..1083492) Bordetella avium 197N 6265121 YP_785534.1 CDS BAV1011 NC_010645.1 1083494 1083784 R membrane protein complement(1083494..1083784) Bordetella avium 197N 6265122 YP_785535.1 CDS BAV1012 NC_010645.1 1084002 1084538 R hypothetical protein complement(1084002..1084538) Bordetella avium 197N 6265123 YP_785536.1 CDS BAV1013 NC_010645.1 1084732 1086201 D X-Pro dipeptidase 1084732..1086201 Bordetella avium 197N 6265124 YP_785537.1 CDS BAV1014 NC_010645.1 1086223 1086492 R hypothetical protein complement(1086223..1086492) Bordetella avium 197N 6265125 YP_785538.1 CDS marC NC_010645.1 1086493 1087188 R protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC complement(1086493..1087188) Bordetella avium 197N 6265126 YP_785539.1 CDS BAV1016 NC_010645.1 1087185 1088075 R GntR family transcriptional regulator complement(1087185..1088075) Bordetella avium 197N 6267329 YP_785540.1 CDS acnA NC_010645.1 1088164 1090743 R catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1088164..1090743) Bordetella avium 197N 6265127 YP_785541.1 CDS tpm NC_010645.1 1090950 1091603 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 1090950..1091603 Bordetella avium 197N 6266584 YP_785542.1 CDS BAV1019 NC_010645.1 1091725 1091883 D Seems to be unique to Bordetellae.; lipoprotein 1091725..1091883 Bordetella avium 197N 6267823 YP_785543.1 CDS BAV1020 NC_010645.1 1092031 1093650 D methyl-accepting chemotaxis transducer 1092031..1093650 Bordetella avium 197N 6265128 YP_785544.1 CDS cheW NC_010645.1 1093656 1094144 D chemotaxis protein 1093656..1094144 Bordetella avium 197N 6265129 YP_785545.1 CDS cheR NC_010645.1 1094141 1095361 D Similar to N-terminal region of Escherichia coli chemotaxis protein methyltransferase cheR SWALL:CHER_ECOLI (SWALL:P07364) (286 aa) fasta scores: E(): 1.8e-11, 33.46 id in 257 aa; chemotaxis protein methyltransferase 1094141..1095361 Bordetella avium 197N 6266779 YP_785546.1 CDS BAV1023 NC_010645.1 1095361 1095981 D chemotaxis protein 1095361..1095981 Bordetella avium 197N 6266777 YP_785547.1 CDS cheA NC_010645.1 1095978 1098197 D chemotaxis protein 1095978..1098197 Bordetella avium 197N 6265130 YP_785548.1 CDS cheB NC_010645.1 1098194 1099222 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1098194..1099222 Bordetella avium 197N 6266771 YP_785549.1 CDS wspR NC_010645.1 1099234 1100244 D signaling/response regulator protein 1099234..1100244 Bordetella avium 197N 6266773 YP_785550.1 CDS BAV1027 NC_010645.1 1100450 1101157 D hypothetical protein 1100450..1101157 Bordetella avium 197N 6267937 YP_785551.1 CDS BAV1028 NC_010645.1 1101228 1102772 R extracellular solute-binding protein complement(1101228..1102772) Bordetella avium 197N 6265131 YP_785552.1 CDS aat NC_010645.1 1102797 1103927 R acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase complement(1102797..1103927) Bordetella avium 197N 6265132 YP_785553.1 CDS BAV1030 NC_010645.1 1104331 1105068 D hypothetical protein 1104331..1105068 Bordetella avium 197N 6266571 YP_785554.1 CDS BAV1031 NC_010645.1 1105226 1106122 D LysR family transcriptional regulator 1105226..1106122 Bordetella avium 197N 6265133 YP_785555.1 CDS BAV1032 NC_010645.1 1106129 1106707 R hypothetical protein complement(1106129..1106707) Bordetella avium 197N 6265134 YP_785556.1 CDS BAV1033 NC_010645.1 1106725 1107687 R hypothetical protein complement(1106725..1107687) Bordetella avium 197N 6265135 YP_785557.1 CDS BAV1034 NC_010645.1 1107726 1108628 R dehydrogenase complement(1107726..1108628) Bordetella avium 197N 6265136 YP_785558.1 CDS BAV1035 NC_010645.1 1108767 1109717 D LysR family transcriptional regulator 1108767..1109717 Bordetella avium 197N 6265137 YP_785559.1 CDS BAV1036 NC_010645.1 1109785 1110567 D metallo-phosphoesterase 1109785..1110567 Bordetella avium 197N 6265138 YP_785560.1 CDS BAV1037 NC_010645.1 1110609 1111349 D membrane-associated phosphatase 1110609..1111349 Bordetella avium 197N 6265139 YP_785561.1 CDS BAV1038 NC_010645.1 1111318 1111731 R hypothetical protein complement(1111318..1111731) Bordetella avium 197N 6265140 YP_785562.1 CDS BAV1039 NC_010645.1 1111728 1112150 R thioesterase complement(1111728..1112150) Bordetella avium 197N 6265141 YP_785563.1 CDS BAV1040 NC_010645.1 1112152 1112754 R TetR family transcriptional regulator complement(1112152..1112754) Bordetella avium 197N 6265142 YP_785564.1 CDS BAV1041 NC_010645.1 1113078 1114241 D outer membrane porin protein 1113078..1114241 Bordetella avium 197N 6265143 YP_785565.1 CDS nuoA NC_010645.1 1114437 1114796 D NADH dehydrogenase I subunit A 1114437..1114796 Bordetella avium 197N 6265144 YP_785566.1 CDS nuoB NC_010645.1 1114827 1115303 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1114827..1115303 Bordetella avium 197N 6267433 YP_785567.1 CDS nuoC NC_010645.1 1115369 1115989 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 1115369..1115989 Bordetella avium 197N 6267434 YP_785568.1 CDS nuoD NC_010645.1 1115992 1117248 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1115992..1117248 Bordetella avium 197N 6267435 YP_785569.1 CDS nuoE NC_010645.1 1117290 1117784 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 1117290..1117784 Bordetella avium 197N 6267436 YP_785570.1 CDS nuoF NC_010645.1 1117781 1119148 D NADH dehydrogenase I subunit F 1117781..1119148 Bordetella avium 197N 6267437 YP_785571.1 CDS nuoG NC_010645.1 1119164 1121491 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 1119164..1121491 Bordetella avium 197N 6267438 YP_785572.1 CDS nuoH NC_010645.1 1121491 1122564 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1121491..1122564 Bordetella avium 197N 6267439 YP_785573.1 CDS nuoI NC_010645.1 1122586 1123074 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1122586..1123074 Bordetella avium 197N 6267440 YP_785574.1 CDS nuoJ NC_010645.1 1123092 1123724 D NADH dehydrogenase I subunit J 1123092..1123724 Bordetella avium 197N 6267441 YP_785575.1 CDS nuoK NC_010645.1 1123721 1124029 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1123721..1124029 Bordetella avium 197N 6267442 YP_785576.1 CDS nuoL NC_010645.1 1124047 1126062 D NADH dehydrogenase I subunit L 1124047..1126062 Bordetella avium 197N 6267443 YP_785577.1 CDS nuoM NC_010645.1 1126059 1127561 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 1126059..1127561 Bordetella avium 197N 6267444 YP_785578.1 CDS nuoN NC_010645.1 1127571 1129058 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1127571..1129058 Bordetella avium 197N 6267445 YP_785579.1 CDS BAV1056 NC_010645.1 1129055 1129369 D membrane protein 1129055..1129369 Bordetella avium 197N 6267446 YP_785580.1 CDS BAV1057 NC_010645.1 <1129876 1130217 D hypothetical protein <1129876..1130217 Bordetella avium 197N 6265145 YP_785581.1 CDS BAV1058 NC_010645.1 <1130438 1130890 D hypothetical protein <1130438..1130890 Bordetella avium 197N 6265146 YP_785582.1 CDS ispF NC_010645.1 1130865 1131353 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(1130865..1131353) Bordetella avium 197N 6265147 YP_785583.1 CDS ispD NC_010645.1 1131350 1132036 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(1131350..1132036) Bordetella avium 197N 6267256 YP_785584.1 CDS mfd NC_010645.1 <1132089 1135526 D transcription-repair coupling factor <1132089..1135526 Bordetella avium 197N 6267254 YP_785585.1 CDS serB NC_010645.1 1135552 1136409 D phosphoserine phosphatase 1135552..1136409 Bordetella avium 197N 6267347 YP_785586.1 CDS ahpD NC_010645.1 1136484 1137002 R antioxidant protein complement(1136484..1137002) Bordetella avium 197N 6267754 YP_785587.1 CDS ahpC NC_010645.1 1137061 1137609 R alkyl hydroperoxide reductase complement(1137061..1137609) Bordetella avium 197N 6266608 YP_785588.1 CDS risS NC_010645.1 1137672 1139114 R two component system sensor kinase complement(1137672..1139114) Bordetella avium 197N 6266607 YP_785589.1 CDS ompR NC_010645.1 1139101 1139835 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator complement(1139101..1139835) Bordetella avium 197N 6267662 YP_785590.1 CDS BAV1067 NC_010645.1 1139965 1141236 D acetyltransferase 1139965..1141236 Bordetella avium 197N 6267661 YP_785591.1 CDS BAV1068 NC_010645.1 <1141470 1142090 D uracil-DNA glycosylase <1141470..1142090 Bordetella avium 197N 6265148 YP_785592.1 CDS BAV1069 NC_010645.1 1142108 1143424 R lysophospholipid transporter LplT complement(1142108..1143424) Bordetella avium 197N 6265149 YP_785593.1 CDS BAV1070 NC_010645.1 1143626 1147222 D chromosome partition protein 1143626..1147222 Bordetella avium 197N 6265150 YP_785594.1 CDS BAV1071 NC_010645.1 1147267 1148307 D membrane protein 1147267..1148307 Bordetella avium 197N 6265151 YP_785595.1 CDS dnaL NC_010645.1 1148307 1150394 D DNA ligase 1148307..1150394 Bordetella avium 197N 6265152 YP_785596.1 CDS BAV1073 NC_010645.1 1150454 1151230 R protein foldase complement(1150454..1151230) Bordetella avium 197N 6266894 YP_785597.1 CDS BAV1074 NC_010645.1 1151270 1151539 R Also similar to BAV3311 (37.6 38d).; BolA-like protein complement(1151270..1151539) Bordetella avium 197N 6265153 YP_785598.1 CDS ispZ NC_010645.1 1151541 1152101 R intracellular septation protein complement(1151541..1152101) Bordetella avium 197N 6265154 YP_785599.1 CDS msrB NC_010645.1 1152098 1152493 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(1152098..1152493) Bordetella avium 197N 6267258 YP_785600.1 CDS BAV1077 NC_010645.1 1152544 1153221 D ABC transporter ATP-binding protein 1152544..1153221 Bordetella avium 197N 6267393 YP_785601.1 CDS BAV1078 NC_010645.1 1153218 1153805 D cobalt ABC transporter permease 1153218..1153805 Bordetella avium 197N 6265155 YP_785602.1 CDS BAV1079 NC_010645.1 1153844 1154395 D BioY family membrane protein 1153844..1154395 Bordetella avium 197N 6265156 YP_785603.1 CDS BAV1080 NC_010645.1 1154617 1155780 D ABC transporter substrate-binding protein 1154617..1155780 Bordetella avium 197N 6265157 YP_785604.1 CDS BAV1081 NC_010645.1 1155896 1156933 D branched-chain amino acid ABC transporter permease 1155896..1156933 Bordetella avium 197N 6265158 YP_785605.1 CDS BAV1082 NC_010645.1 1156937 1158775 D branched-chain amino acid ABC transporter ATP-binding/permease 1156937..1158775 Bordetella avium 197N 6265159 YP_785606.1 CDS BAV1083 NC_010645.1 1158772 1159512 D branched-chain amino acid ABC transporter ATP-binding protein 1158772..1159512 Bordetella avium 197N 6265160 YP_785607.1 CDS plcN1 NC_010645.1 1159522 1161603 R Also similar to BAV1803 (49.7 38d.).; non-hemolytic phospholipase C complement(1159522..1161603) Bordetella avium 197N 6265161 YP_785608.1 CDS ilvE NC_010645.1 1161754 1162593 R aminotransferase complement(1161754..1162593) Bordetella avium 197N 6267542 YP_785609.1 CDS BAV1086 NC_010645.1 1162877 1163860 R ABC transporter permease complement(1162877..1163860) Bordetella avium 197N 6267239 YP_785610.1 CDS BAV1087 NC_010645.1 1163857 1164744 R ABC transporter permease complement(1163857..1164744) Bordetella avium 197N 6265162 YP_785611.1 CDS BAV1088 NC_010645.1 1164838 1166052 R ABC transporter substrate-binding protein complement(1164838..1166052) Bordetella avium 197N 6265163 YP_785612.1 CDS BAV1089 NC_010645.1 1166112 1166825 R ABC transporter ATP-binding protein complement(1166112..1166825) Bordetella avium 197N 6265164 YP_785613.1 CDS BAV1090 NC_010645.1 1166822 1167595 R ABC transporter ATP-binding protein complement(1166822..1167595) Bordetella avium 197N 6265165 YP_785614.1 CDS nth NC_010645.1 1167823 1168458 R endonuclease III complement(1167823..1168458) Bordetella avium 197N 6265166 YP_785615.1 CDS BAV1092 NC_010645.1 1168465 1169106 R Involved in the electron transport chain; ferredoxin complement(1168465..1169106) Bordetella avium 197N 6267429 YP_785616.1 CDS phaZ NC_010645.1 1169161 1170387 R poly-beta-hydroxybutyrate (PHB) depolymerase complement(1169161..1170387) Bordetella avium 197N 6265167 YP_785617.1 CDS fpr NC_010645.1 1170525 1171316 R ferredoxin--NADP reductase complement(1170525..1171316) Bordetella avium 197N 6267518 YP_785618.1 CDS fdxA NC_010645.1 1171336 1171659 R ferredoxin complement(1171336..1171659) Bordetella avium 197N 6267030 YP_785619.1 CDS pncB NC_010645.1 1171786 1172997 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1171786..1172997 Bordetella avium 197N 6266967 YP_785620.1 CDS BAV1097 NC_010645.1 1173038 1173391 D hypothetical protein 1173038..1173391 Bordetella avium 197N 6267548 YP_785621.1 CDS BAV1098 NC_010645.1 1173438 1173956 R flavodoxin complement(1173438..1173956) Bordetella avium 197N 6265168 YP_785622.1 CDS BAV1099 NC_010645.1 1173953 1174780 R hypothetical protein complement(1173953..1174780) Bordetella avium 197N 6265169 YP_785623.1 CDS relA NC_010645.1 1174984 1177215 D GTP pyrophosphokinase 1174984..1177215 Bordetella avium 197N 6265170 YP_785624.1 CDS argE NC_010645.1 1177320 1178471 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 1177320..1178471 Bordetella avium 197N 6267636 YP_785625.1 CDS trpB NC_010645.1 <1178608 1179807 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta <1178608..1179807 Bordetella avium 197N 6266646 YP_785626.1 CDS trpA NC_010645.1 1179814 1180668 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1179814..1180668 Bordetella avium 197N 6267893 YP_785627.1 CDS accD NC_010645.1 1180701 1181579 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1180701..1181579 Bordetella avium 197N 6267892 YP_785628.1 CDS BAV1105 NC_010645.1 1181793 1182338 D outer membrane protein 1181793..1182338 Bordetella avium 197N 6266578 YP_785629.1 CDS BAV1106 NC_010645.1 1182571 1183185 R amino acid efflux protein complement(1182571..1183185) Bordetella avium 197N 6265171 YP_785630.1 CDS BAV1107 NC_010645.1 1183284 1184087 R AraC family transcriptional regulator complement(1183284..1184087) Bordetella avium 197N 6265172 YP_785631.1 CDS ams NC_010645.1 1184285 1187332 R ribonuclease E complement(1184285..1187332) Bordetella avium 197N 6265173 YP_785632.1 CDS rluC NC_010645.1 1187853 1188812 D ribosomal large subunit pseudouridine synthase C 1187853..1188812 Bordetella avium 197N 6266627 YP_785633.1 CDS BAV1110 NC_010645.1 1188814 1189470 D hydrolase 1188814..1189470 Bordetella avium 197N 6267665 YP_785634.1 CDS BAV1111 NC_010645.1 1189575 1190534 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 1189575..1190534 Bordetella avium 197N 6265174 YP_785635.1 CDS BAV1112 NC_010645.1 1190546 1191175 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 1190546..1191175 Bordetella avium 197N 6265175 YP_785636.1 CDS BAV1113 NC_010645.1 1191150 1191932 R N-acetylmuramoyl-L-alanine amidase complement(1191150..1191932) Bordetella avium 197N 6265176 YP_785637.1 CDS BAV1114 NC_010645.1 1191936 1192646 R hypothetical protein complement(1191936..1192646) Bordetella avium 197N 6265177 YP_785638.1 CDS BAV1115 NC_010645.1 1192643 1193236 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1192643..1193236) Bordetella avium 197N 6265178 YP_785639.1 CDS BAV1116 NC_010645.1 1193696 1194358 D hypothetical protein 1193696..1194358 Bordetella avium 197N 6265179 YP_785640.1 CDS rpmF NC_010645.1 1194411 1194593 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1194411..1194593 Bordetella avium 197N 6265180 YP_785641.1 CDS plsX NC_010645.1 <1194642 1195706 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX <1194642..1195706 Bordetella avium 197N 6267701 YP_785642.1 CDS fabH NC_010645.1 1195706 1196692 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 1195706..1196692 Bordetella avium 197N 6267544 YP_785643.1 CDS fabD NC_010645.1 1196752 1197687 D malonyl CoA-acyl carrier protein transacylase 1196752..1197687 Bordetella avium 197N 6266948 YP_785644.1 CDS fabG NC_010645.1 1197688 1198440 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 1197688..1198440 Bordetella avium 197N 6266944 YP_785645.1 CDS acpP NC_010645.1 1198657 1198896 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1198657..1198896 Bordetella avium 197N 6266947 YP_785646.1 CDS fabF NC_010645.1 <1199071 1200300 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II <1199071..1200300 Bordetella avium 197N 6266589 YP_785647.1 CDS BAV1124 NC_010645.1 1200297 1200734 D hypothetical protein 1200297..1200734 Bordetella avium 197N 6266946 YP_785648.1 CDS rpoE NC_010645.1 1200731 1201330 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1200731..1201330 Bordetella avium 197N 6265181 YP_785649.1 CDS rseA NC_010645.1 1201343 1201828 D sigma-E factor negative regulatory protein 1201343..1201828 Bordetella avium 197N 6267708 YP_785650.1 CDS rseB NC_010645.1 1201828 1202853 D sigma-E factor regulatory protein 1201828..1202853 Bordetella avium 197N 6267729 YP_785651.1 CDS mucD NC_010645.1 1202899 1204395 D serine protease 1202899..1204395 Bordetella avium 197N 6267730 YP_785652.1 CDS lepA NC_010645.1 1204598 1206391 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1204598..1206391 Bordetella avium 197N 6267397 YP_785653.1 CDS lepB NC_010645.1 1206412 1207296 D signal peptidase I 1206412..1207296 Bordetella avium 197N 6267284 YP_785654.1 CDS rnc NC_010645.1 1207302 1208057 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1207302..1208057 Bordetella avium 197N 6267285 YP_785655.1 CDS era NC_010645.1 1208054 1208944 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1208054..1208944 Bordetella avium 197N 6267668 YP_785656.1 CDS recO NC_010645.1 1208937 1209524 D DNA repair protein 1208937..1209524 Bordetella avium 197N 6266931 YP_785657.1 CDS BAV1134 NC_010645.1 1209848 1210558 R membrane protein complement(1209848..1210558) Bordetella avium 197N 6267630 YP_785658.1 CDS BAV1135 NC_010645.1 1210659 1210895 R hypothetical protein complement(1210659..1210895) Bordetella avium 197N 6265182 YP_785659.1 CDS holC NC_010645.1 1210919 1211356 R DNA polymerase III subunit chi complement(1210919..1211356) Bordetella avium 197N 6265183 YP_785660.1 CDS pepA NC_010645.1 1211373 1212887 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1211373..1212887) Bordetella avium 197N 6267191 YP_785661.1 CDS BAV1138 NC_010645.1 1212942 1214060 D permease 1212942..1214060 Bordetella avium 197N 6267499 YP_785662.1 CDS BAV1139 NC_010645.1 1214067 1214990 R LysR family transcriptional regulator complement(1214067..1214990) Bordetella avium 197N 6265184 YP_785663.1 CDS BAV1140 NC_010645.1 1215141 1216349 D hypothetical protein 1215141..1216349 Bordetella avium 197N 6265185 YP_785664.1 CDS BAV1141 NC_010645.1 1216407 1217900 D methylmalonate-semialdehyde dehydrogenase 1216407..1217900 Bordetella avium 197N 6265186 YP_785665.1 CDS BAV1143 NC_010645.1 1218382 1219326 D transcriptional regulator CysB-like protein 1218382..1219326 Bordetella avium 197N 6265187 YP_785666.1 CDS BAV1144 NC_010645.1 1219577 1219912 D hypothetical protein 1219577..1219912 Bordetella avium 197N 6265188 YP_785667.1 CDS BAV1145 NC_010645.1 1220112 1220768 R lipoprotein complement(1220112..1220768) Bordetella avium 197N 6265189 YP_785668.1 CDS prpE NC_010645.1 1221038 1222927 D catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 1221038..1222927 Bordetella avium 197N 6265190 YP_785669.1 CDS BAV1147 NC_010645.1 1222924 1223331 D hypothetical protein 1222924..1223331 Bordetella avium 197N 6267583 YP_785670.1 CDS BAV1148 NC_010645.1 <1223334 1224629 D transporter <1223334..1224629 Bordetella avium 197N 6265191 YP_785671.1 CDS acs NC_010645.1 1224769 1226748 D Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 1224769..1226748 Bordetella avium 197N 6265192 YP_785672.1 CDS ltaE NC_010645.1 1227117 1228130 D low-specificity L-threonine aldolase 1227117..1228130 Bordetella avium 197N 6266593 YP_785673.1 CDS BAV1151 NC_010645.1 1228197 1229030 R hypothetical protein complement(1228197..1229030) Bordetella avium 197N 6267316 YP_785674.1 CDS etf NC_010645.1 1229163 1230791 R electron transfer flavoprotein-ubiquinone oxidoreductase complement(1229163..1230791) Bordetella avium 197N 6265193 YP_785675.1 CDS BAV1153 NC_010645.1 1230945 1231397 D thioesterase 1230945..1231397 Bordetella avium 197N 6266933 YP_785676.1 CDS lpsI NC_010645.1 1231506 1232204 D succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A 1231506..1232204 Bordetella avium 197N 6265194 YP_785677.1 CDS lpsJ NC_010645.1 1232217 1232870 D succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B 1232217..1232870 Bordetella avium 197N 6267309 YP_785678.1 CDS BAV1156 NC_010645.1 1233066 1233950 D RpiR family transcriptional regulator 1233066..1233950 Bordetella avium 197N 6267310 YP_785679.1 CDS BAV1157 NC_010645.1 1233947 1234927 D L-asparaginase 1233947..1234927 Bordetella avium 197N 6265195 YP_785680.1 CDS BAV1158 NC_010645.1 1234965 1236848 D ABC transporter ATP-binding protein 1234965..1236848 Bordetella avium 197N 6265196 YP_785681.1 CDS BAV1159 NC_010645.1 1236926 1238479 D ABC transporter substrate-binding protein 1236926..1238479 Bordetella avium 197N 6265197 YP_785682.1 CDS BAV1160 NC_010645.1 1238530 1239450 D ABC transporter permease 1238530..1239450 Bordetella avium 197N 6265198 YP_785683.1 CDS BAV1161 NC_010645.1 1239458 1240351 D ABC transporter permease 1239458..1240351 Bordetella avium 197N 6265199 YP_785684.1 CDS dmpA NC_010645.1 <1240394 1241512 D D-aminopeptidase <1240394..1241512 Bordetella avium 197N 6265200 YP_785685.1 CDS dppA NC_010645.1 1241525 1242343 D D-aminopeptidase 1241525..1242343 Bordetella avium 197N 6266886 YP_785686.1 CDS BAV1164 NC_010645.1 1242358 1244154 D aminopeptidase P 1242358..1244154 Bordetella avium 197N 6266900 YP_785687.1 CDS pyrG NC_010645.1 1244377 1246029 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1244377..1246029 Bordetella avium 197N 6265201 YP_785688.1 CDS eno NC_010645.1 1246216 1247502 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1246216..1247502 Bordetella avium 197N 6267614 YP_785689.1 CDS ftsB NC_010645.1 1247576 1247944 D forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 1247576..1247944 Bordetella avium 197N 6266926 YP_785690.1 CDS BAV1168 NC_010645.1 1247968 1248621 R seems to be unique to the bordetellae. to other organisms.; hypothetical protein complement(1247968..1248621) Bordetella avium 197N 6267033 YP_785691.1 CDS hslO NC_010645.1 1248681 1249601 R chaperonin complement(1248681..1249601) Bordetella avium 197N 6265202 YP_785692.1 CDS BAV1170 NC_010645.1 1249640 1250161 R transferase complement(1249640..1250161) Bordetella avium 197N 6267212 YP_785693.1 CDS BAV1171 NC_010645.1 1250167 1251831 R acetyl-CoA synthetase complement(1250167..1251831) Bordetella avium 197N 6265203 YP_785694.1 CDS BAV1172 NC_010645.1 1251993 1252478 R membrane protein complement(1251993..1252478) Bordetella avium 197N 6265204 YP_785695.1 CDS BAV1173 NC_010645.1 1252818 1253618 R AraC family transcriptional regulator complement(1252818..1253618) Bordetella avium 197N 6265205 YP_785696.1 CDS leuA1 NC_010645.1 1253896 1255572 D Also similar to BAV3351 (55.3 38d.).; 2-isopropylmalate synthase 1253896..1255572 Bordetella avium 197N 6265206 YP_785697.1 CDS BAV1175 NC_010645.1 1255967 1256158 R Seems to be unique to the bordetellae. to other proteins in the database; hypothetical protein complement(1255967..1256158) Bordetella avium 197N 6267286 YP_785698.1 CDS BAV1176 NC_010645.1 1256384 1257991 R methylase complement(1256384..1257991) Bordetella avium 197N 6265207 YP_785699.1 CDS BAV1177 NC_010645.1 1258013 1258441 R membrane protein complement(1258013..1258441) Bordetella avium 197N 6265208 YP_785700.1 CDS prpC NC_010645.1 1258569 1259771 R catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase complement(1258569..1259771) Bordetella avium 197N 6265209 YP_785701.1 CDS prpB NC_010645.1 1259840 1260733 R catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase complement(1259840..1260733) Bordetella avium 197N 6267582 YP_785702.1 CDS mdh NC_010645.1 1260924 1261913 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(1260924..1261913) Bordetella avium 197N 6267581 YP_785703.1 CDS BAV1181 NC_010645.1 1262231 1263010 D GntR family transcriptional regulator 1262231..1263010 Bordetella avium 197N 6267331 YP_785704.1 CDS sdhC NC_010645.1 1263131 1263544 D succinate dehydrogenase cytochrome b-556 subunit 1263131..1263544 Bordetella avium 197N 6265210 YP_785705.1 CDS sdhD NC_010645.1 1263544 1263927 D succinate dehydrogenase hydrophobic membrane anchor subunit 1263544..1263927 Bordetella avium 197N 6267743 YP_785706.1 CDS sdhA NC_010645.1 <1263931 1265709 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit <1263931..1265709 Bordetella avium 197N 6267744 YP_785707.1 CDS sdhB NC_010645.1 1265723 1266439 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1265723..1266439 Bordetella avium 197N 6267741 YP_785708.1 CDS BAV1186 NC_010645.1 1266465 1266725 D hypothetical protein 1266465..1266725 Bordetella avium 197N 6267742 YP_785709.1 CDS gltA NC_010645.1 1266746 1268047 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 1266746..1268047 Bordetella avium 197N 6265211 YP_785710.1 CDS BAV1188 NC_010645.1 1268652 1270193 R signaling protein complement(1268652..1270193) Bordetella avium 197N 6267097 YP_785711.1 CDS BAV1189 NC_010645.1 1270958 >1271806 R LysR family transcriptional regulator complement(1270958..>1271806) Bordetella avium 197N 6265212 YP_785712.1 CDS BAV1190 NC_010645.1 1272020 1273096 D ABC transporter ATP-binding protein 1272020..1273096 Bordetella avium 197N 6265213 YP_785713.1 CDS BAV1191 NC_010645.1 1273107 1274831 D ABC transporter permease 1273107..1274831 Bordetella avium 197N 6265214 YP_785714.1 CDS phnX NC_010645.1 1274837 1275679 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 1274837..1275679 Bordetella avium 197N 6265215 YP_785715.1 CDS BAV1193 NC_010645.1 1275733 1276761 D ABC transporter periplasmic binding protein 1275733..1276761 Bordetella avium 197N 6267528 YP_785716.1 CDS BAV1194 NC_010645.1 1276835 1277962 D oxidoreductase 1276835..1277962 Bordetella avium 197N 6265216 YP_785717.1 CDS BAV1195 NC_010645.1 1278011 1278463 R membrane protein complement(1278011..1278463) Bordetella avium 197N 6265217 YP_785718.1 CDS piuC NC_010645.1 1278563 1279246 R iron-uptake factor complement(1278563..1279246) Bordetella avium 197N 6265218 YP_785719.1 CDS piuA NC_010645.1 1279248 1281443 R hydroxamate-type ferrisiderophore receptor complement(1279248..1281443) Bordetella avium 197N 6267541 YP_785720.1 CDS BAV1198 NC_010645.1 1281629 1281751 R Similar to C-terminal regions of several CDSs; hypothetical protein complement(join(1281629..1281751,1281754..>1281942)) Bordetella avium 197N 6267540 YP_785721.1 CDS BAV1199 NC_010645.1 <1282029 1282238 D ; Partial CDS. Similar to the C-terminal regions of severals including bordetellae transcriptional regulators; hypothetical protein <1282029..1282238 Bordetella avium 197N 6265219 YP_785722.1 CDS maeB NC_010645.1 1282331 1284613 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(1282331..1284613) Bordetella avium 197N 6265220 YP_785723.1 CDS aceE NC_010645.1 1284769 1287426 R paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 complement(1284769..1287426) Bordetella avium 197N 6267323 YP_785724.1 CDS BAV1202 NC_010645.1 1287652 1289685 D oligopeptide transporter 1287652..1289685 Bordetella avium 197N 6266579 YP_785725.1 CDS sucA NC_010645.1 1290054 1292924 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1290054..1292924 Bordetella avium 197N 6265221 YP_785726.1 CDS odhB NC_010645.1 1292971 1294170 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 1292971..1294170 Bordetella avium 197N 6267451 YP_785727.1 CDS odhL NC_010645.1 1294238 1295662 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1294238..1295662 Bordetella avium 197N 6267452 YP_785728.1 CDS BAV1206 NC_010645.1 1295740 1296831 D ATPase 1295740..1296831 Bordetella avium 197N 6267453 YP_785729.1 CDS fecI NC_010645.1 <1296959 1297468 D RNA polymerase ECF family sigma factor <1296959..1297468 Bordetella avium 197N 6265222 YP_785730.1 CDS fecR NC_010645.1 1297461 1298372 D transmembrane sensor protein 1297461..1298372 Bordetella avium 197N 6266969 YP_785731.1 CDS bfrH NC_010645.1 <1298485 1300950 D TonB-dependent siderophore receptor <1298485..1300950 Bordetella avium 197N 6266971 YP_785732.1 CDS BAV1210 NC_010645.1 <1301047 1301343 D membrane protein <1301047..1301343 Bordetella avium 197N 6266707 YP_785733.1 CDS BAV1211 NC_010645.1 1301340 1302959 D membrane protein 1301340..1302959 Bordetella avium 197N 6265223 YP_785734.1 CDS BAV1212 NC_010645.1 1302956 1303285 D membrane protein 1302956..1303285 Bordetella avium 197N 6265224 YP_785735.1 CDS trpS NC_010645.1 1303359 1304681 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1303359..1304681 Bordetella avium 197N 6265225 YP_785736.1 CDS BAV1214 NC_010645.1 1304799 1306850 R ATP-dependent helicase complement(1304799..1306850) Bordetella avium 197N 6267898 YP_785737.1 CDS tex NC_010645.1 1307017 1309389 D transcription accessory protein 1307017..1309389 Bordetella avium 197N 6265226 YP_785738.1 CDS BAV1216 NC_010645.1 1309565 >1310164 R ADP-ribosyltransferase toxin (partial) complement(1309565..>1310164) Bordetella avium 197N 6267796 YP_785739.1 CDS BAV1217 NC_010645.1 1310234 1311906 R Partial CDS. Similar to Fha-family adhesins of B. bronchiseptica; adhesin (partial) complement(join(1310234..1311274,1311277..1311906)) Bordetella avium 197N 6265227 YP_785740.1 CDS BAV1218 NC_010645.1 1312222 >1313070 R lipoprotein complement(1312222..>1313070) Bordetella avium 197N 6265228 YP_785741.1 CDS rluD NC_010645.1 1313123 1314085 D ribosomal large subunit pseudouridine synthase D 1313123..1314085 Bordetella avium 197N 6265229 YP_785742.1 CDS BAV1220 NC_010645.1 1314073 1314834 D hypothetical protein 1314073..1314834 Bordetella avium 197N 6267666 YP_785743.1 CDS phbC NC_010645.1 <1314973 1316598 D poly-beta-hydroxybutyrate polymerase <1314973..1316598 Bordetella avium 197N 6265230 YP_785744.1 CDS fabG NC_010645.1 1316655 1317392 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 1316655..1317392 Bordetella avium 197N 6267521 YP_785745.1 CDS phbF NC_010645.1 1317483 1318046 D regulator of poly-beta-hydroxybutyrate (PHB) biosynthesis 1317483..1318046 Bordetella avium 197N 6267519 YP_785746.1 CDS BAV1224 NC_010645.1 1318216 1318755 D hypothetical protein 1318216..1318755 Bordetella avium 197N 6267522 YP_785747.1 CDS BAV1225 NC_010645.1 1318758 1319090 D hypothetical protein 1318758..1319090 Bordetella avium 197N 6265231 YP_785748.1 CDS BAV1226 NC_010645.1 1319101 1319937 D permease 1319101..1319937 Bordetella avium 197N 6265232 YP_785749.1 CDS BAV1227 NC_010645.1 1319963 1321324 D membrane protein 1319963..1321324 Bordetella avium 197N 6265233 YP_785750.1 CDS BAV1228 NC_010645.1 1321399 1322274 D hypothetical protein 1321399..1322274 Bordetella avium 197N 6265234 YP_785751.1 CDS BAV1229 NC_010645.1 1322366 1322698 R hypothetical protein complement(1322366..1322698) Bordetella avium 197N 6265235 YP_785752.1 CDS BAV1230 NC_010645.1 1322765 1322929 R hypothetical protein complement(1322765..1322929) Bordetella avium 197N 6265236 YP_785753.1 CDS BAV1231 NC_010645.1 1322960 1323160 R hypothetical protein complement(1322960..1323160) Bordetella avium 197N 6265237 YP_785754.1 CDS cphA1 NC_010645.1 1323967 1326540 R catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase complement(1323967..1326540) Bordetella avium 197N 6265238 YP_785755.1 CDS cphA2 NC_010645.1 1326609 1329221 R catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase complement(1326609..1329221) Bordetella avium 197N 6266807 YP_785756.1 CDS BAV1234 NC_010645.1 1329478 1331760 D ABC transporter permease and ATP-binding protein 1329478..1331760 Bordetella avium 197N 6266808 YP_785757.1 CDS BAV1235 NC_010645.1 1331765 1332229 D hypothetical protein 1331765..1332229 Bordetella avium 197N 6265239 YP_785758.1 CDS BAV1236 NC_010645.1 1332235 1333365 R hypothetical protein complement(1332235..1333365) Bordetella avium 197N 6265240 YP_785759.1 CDS BAV1237 NC_010645.1 <1333477 1334208 D hypothetical protein <1333477..1334208 Bordetella avium 197N 6265241 YP_785760.1 CDS BAV1238 NC_010645.1 1334233 1335450 D lytic murein transglycosylase 1334233..1335450 Bordetella avium 197N 6265242 YP_785761.1 CDS BAV1239 NC_010645.1 1335782 1337347 D signaling protein 1335782..1337347 Bordetella avium 197N 6265243 YP_785762.1 CDS BAV1240 NC_010645.1 1337355 1337672 R hypothetical protein complement(1337355..1337672) Bordetella avium 197N 6265244 YP_785763.1 CDS BAV1241 NC_010645.1 1337795 1338319 D membrane protein 1337795..1338319 Bordetella avium 197N 6265245 YP_785764.1 CDS BAV1242 NC_010645.1 1338424 1338846 D hypothetical protein 1338424..1338846 Bordetella avium 197N 6265246 YP_785765.1 CDS rfbB NC_010645.1 1338843 1339898 R dTDP-glucose 4,6-dehydratase complement(1338843..1339898) Bordetella avium 197N 6265247 YP_785766.1 CDS rfbA NC_010645.1 1340052 1340930 R glucose-1-phosphate thymidylyltransferase 1 complement(1340052..1340930) Bordetella avium 197N 6267643 YP_785767.1 CDS BAV1245 NC_010645.1 1341050 1341427 R hypothetical protein complement(1341050..1341427) Bordetella avium 197N 6267642 YP_785768.1 CDS BAV1246 NC_010645.1 1341475 1342446 R glycosyl transferase complement(1341475..1342446) Bordetella avium 197N 6265248 YP_785769.1 CDS BAV1247 NC_010645.1 1342443 1342844 R O antigen biosynthesis protein complement(1342443..1342844) Bordetella avium 197N 6265249 YP_785770.1 CDS BAV1248 NC_010645.1 1342844 1343755 R transketolase C-terminal part complement(1342844..1343755) Bordetella avium 197N 6265250 YP_785771.1 CDS BAV1249 NC_010645.1 1343755 1344567 R transketolase N-terminal part complement(1343755..1344567) Bordetella avium 197N 6265251 YP_785772.1 CDS BAV1250 NC_010645.1 1344564 >1345631 R sugar epimerase/dehydratase complement(1344564..>1345631) Bordetella avium 197N 6265252 YP_785773.1 CDS BAV1251 NC_010645.1 1345633 >1346520 R O antigen biosynthesis protein complement(1345633..>1346520) Bordetella avium 197N 6265253 YP_785774.1 CDS BAV1252 NC_010645.1 1346513 1347466 R O antigen biosynthesis sulfotransferase complement(1346513..1347466) Bordetella avium 197N 6265254 YP_785775.1 CDS BAV1253 NC_010645.1 1347469 1347657 R hypothetical protein complement(1347469..1347657) Bordetella avium 197N 6265255 YP_785776.1 CDS rfbG NC_010645.1 1347809 1348894 R CDP-glucose 4,6-dehydratase complement(1347809..1348894) Bordetella avium 197N 6265256 YP_785777.1 CDS rfbF NC_010645.1 1348881 1349666 R glucose-1-phosphate cytidylyltransferase complement(1348881..1349666) Bordetella avium 197N 6267647 YP_785778.1 CDS BAV1256 NC_010645.1 1349670 1351505 R membrane protein complement(1349670..1351505) Bordetella avium 197N 6267646 YP_785779.1 CDS BAV1258 NC_010645.1 1354289 1354546 R transposase (partial) complement(join(1354289..1354546,1354549..>1354740)) Bordetella avium 197N 6265258 YP_785780.1 CDS hpaI NC_010645.1 1355199 1356017 R 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase complement(1355199..1356017) Bordetella avium 197N 6265259 YP_785781.1 CDS hpaH NC_010645.1 1356049 1356852 R 2-oxo-hept-3-ene-1,7-dioate hydratase complement(1356049..1356852) Bordetella avium 197N 6267202 YP_785782.1 CDS hpaF NC_010645.1 1356862 1357269 R 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(1356862..1357269) Bordetella avium 197N 6267200 YP_785783.1 CDS hpaG' NC_010645.1 1357269 1358069 R Similar to the C-terminal half of Escherichia coli 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase [includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase hpaG SWALL:HPAG_ECOLI (SWALL:Q46978) (429 aa) fasta scores: E(): 1.6e-44, 58.85 38d in 209 aa; 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxylase complement(1357269..1358069) Bordetella avium 197N 6267196 YP_785784.1 CDS hpaG NC_010645.1 1358066 >1358872 R ; Similar to the N-terminal half of Escherichia coli 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase [includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase HpaG SWALL:HPAG_ECOLI (SWALL:Q46978) (429 aa) fasta scores: E(): 1.5e-22, 36.71 38d in 207 aa; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase complement(1358066..>1358872) Bordetella avium 197N 6267198 YP_785785.1 CDS hpaE NC_010645.1 1358923 1360389 R 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase complement(1358923..1360389) Bordetella avium 197N 6267197 YP_785786.1 CDS BAV1267 NC_010645.1 1360413 1360799 R Also similar to BAV1268, BAV1921, BAV0553, BAV1913,BAV3018 and BAV1097; endoribonuclease complement(1360413..1360799) Bordetella avium 197N 6267195 YP_785787.1 CDS BAV1268 NC_010645.1 1360796 1361197 R Also similar to BAV1267, BAV1921, BAV0553, BAV1913,BAV3018 and BAV1097; endoribonuclease complement(1360796..1361197) Bordetella avium 197N 6265260 YP_785788.1 CDS BAV1269 NC_010645.1 1361237 1362241 R catechol 2,3-dioxygenase complement(1361237..1362241) Bordetella avium 197N 6265261 YP_785789.1 CDS BAV1270 NC_010645.1 1362384 1363823 R amidase complement(1362384..1363823) Bordetella avium 197N 6265262 YP_785790.1 CDS BAV1271 NC_010645.1 1363820 1364545 R ABC transporter ATP-binding protein complement(1363820..1364545) Bordetella avium 197N 6265263 YP_785791.1 CDS BAV1272 NC_010645.1 1364542 1366335 R ABC transporter ATP binding/permease complement(1364542..1366335) Bordetella avium 197N 6265264 YP_785792.1 CDS BAV1273 NC_010645.1 1366325 >1367362 R ABC transporter permease complement(1366325..>1367362) Bordetella avium 197N 6265265 YP_785793.1 CDS BAV1274 NC_010645.1 1367359 >1368540 R ABC transporter substrate-binding protein complement(1367359..>1368540) Bordetella avium 197N 6265266 YP_785794.1 CDS BAV1275 NC_010645.1 1368740 1369075 R hypothetical protein complement(1368740..1369075) Bordetella avium 197N 6265267 YP_785795.1 CDS BAV1276 NC_010645.1 1369273 >1369932 R Crp family transcriptional regulator complement(1369273..>1369932) Bordetella avium 197N 6265268 YP_785796.1 CDS BAV1277 NC_010645.1 1370302 1370736 D transposase (partial) 1370302..1370736 Bordetella avium 197N 6265269 YP_785797.1 CDS BAV1277A NC_010645.1 1370729 1370920 D hypothetical protein 1370729..1370920 Bordetella avium 197N 6265270 YP_785798.1 CDS BAV1278 NC_010645.1 1370910 1371179 R phage glycoprotein complement(1370910..1371179) Bordetella avium 197N 6265271 YP_785799.1 CDS BAV1279 NC_010645.1 1371209 1371352 R hypothetical protein complement(1371209..1371352) Bordetella avium 197N 6265272 YP_785800.1 CDS BAV1280 NC_010645.1 1371642 1372889 R phage integrase complement(1371642..1372889) Bordetella avium 197N 6265273 YP_785801.1 CDS BAV1281 NC_010645.1 1372841 1373044 R phage excisionase complement(1372841..1373044) Bordetella avium 197N 6265274 YP_785802.1 CDS BAV1282 NC_010645.1 1373076 1373405 R phage protein complement(1373076..1373405) Bordetella avium 197N 6265275 YP_785803.1 CDS BAV1283 NC_010645.1 <1373403 1374436 R phage methyltransferase complement(<1373403..1374436) Bordetella avium 197N 6265276 YP_785804.1 CDS BAV1284 NC_010645.1 1374440 1374940 R phage methyltransferase complement(1374440..1374940) Bordetella avium 197N 6265277 YP_785805.1 CDS BAV1285 NC_010645.1 1374941 1375315 R phage protein complement(1374941..1375315) Bordetella avium 197N 6265278 YP_785806.1 CDS BAV1286 NC_010645.1 1375312 1376244 R phage protein complement(1375312..1376244) Bordetella avium 197N 6265279 YP_785807.1 CDS rdgC NC_010645.1 1376241 1377143 R Required for efficient pilin antigenic variation; recombination associated protein complement(1376241..1377143) Bordetella avium 197N 6265280 YP_785808.1 CDS BAV1289 NC_010645.1 1377522 1378016 R phage protein complement(1377522..1378016) Bordetella avium 197N 6265281 YP_785809.1 CDS BAV1290 NC_010645.1 1378019 1378630 R phage protein complement(1378019..1378630) Bordetella avium 197N 6265282 YP_785810.1 CDS BAV1291 NC_010645.1 1378631 1379281 R phage protein complement(1378631..1379281) Bordetella avium 197N 6265283 YP_785811.1 CDS BAV1292 NC_010645.1 1379393 1379665 R phage protein complement(1379393..1379665) Bordetella avium 197N 6265284 YP_785812.1 CDS BAV1293 NC_010645.1 1379766 1380092 R phage protein complement(1379766..1380092) Bordetella avium 197N 6265285 YP_785813.1 CDS BAV1294 NC_010645.1 1380760 1381254 R phage protein complement(1380760..1381254) Bordetella avium 197N 6267844 YP_785814.1 CDS BAV1295 NC_010645.1 1381381 1381647 R phage protein complement(1381381..1381647) Bordetella avium 197N 6265287 YP_785815.1 CDS BAV1296 NC_010645.1 1381752 >1382471 R phage protein complement(1381752..>1382471) Bordetella avium 197N 6265288 YP_785816.1 CDS BAV1297 NC_010645.1 1382490 1382717 R phage protein complement(1382490..1382717) Bordetella avium 197N 6265289 YP_785817.1 CDS BAV1298 NC_010645.1 1382739 1383221 R phage membrane protein complement(1382739..1383221) Bordetella avium 197N 6265290 YP_785818.1 CDS BAV1299 NC_010645.1 1383205 1384161 R phage protein complement(1383205..1384161) Bordetella avium 197N 6265291 YP_785819.1 CDS BAV1300 NC_010645.1 1384189 1385271 R phage repressor complement(1384189..1385271) Bordetella avium 197N 6265292 YP_785820.1 CDS BAV1301 NC_010645.1 1385535 1385741 D phage protein 1385535..1385741 Bordetella avium 197N 6265293 YP_785821.1 CDS BAV1302 NC_010645.1 1385756 1386064 D phage regulatory protein 1385756..1386064 Bordetella avium 197N 6265294 YP_785822.1 CDS BAV1303 NC_010645.1 1386064 1386537 D phage protein 1386064..1386537 Bordetella avium 197N 6265295 YP_785823.1 CDS BAV1304 NC_010645.1 1386534 1386905 D phage recombination protein 1386534..1386905 Bordetella avium 197N 6265296 YP_785824.1 CDS BAV1305 NC_010645.1 <1386892 1387683 D phage protein <1386892..1387683 Bordetella avium 197N 6265297 YP_785825.1 CDS BAV1306 NC_010645.1 1387670 1388368 D phage protein 1387670..1388368 Bordetella avium 197N 6265298 YP_785826.1 CDS BAV1307 NC_010645.1 1388365 1388736 D phage endonuclease 1388365..1388736 Bordetella avium 197N 6265299 YP_785827.1 CDS BAV1308 NC_010645.1 1388777 1389223 D phage protein 1388777..1389223 Bordetella avium 197N 6265300 YP_785828.1 CDS BAV1309 NC_010645.1 1389233 1389589 D phage protein 1389233..1389589 Bordetella avium 197N 6265301 YP_785829.1 CDS BAV1310 NC_010645.1 1389607 1389888 D phage protein 1389607..1389888 Bordetella avium 197N 6265302 YP_785830.1 CDS BAV1311 NC_010645.1 1389942 1390454 D phage protein 1389942..1390454 Bordetella avium 197N 6265303 YP_785831.1 CDS BAV1312 NC_010645.1 1390469 1390795 R phage DNA-binding protein complement(1390469..1390795) Bordetella avium 197N 6265304 YP_785832.1 CDS BAV1312A NC_010645.1 1390779 1391033 R phage protein complement(1390779..1391033) Bordetella avium 197N 6265305 YP_785833.1 CDS BAV1313 NC_010645.1 1391095 1391529 D phage small subunit terminase 1391095..1391529 Bordetella avium 197N 6265306 YP_785834.1 CDS BAV1314 NC_010645.1 <1391510 1392931 D phage large subunit terminase <1391510..1392931 Bordetella avium 197N 6265307 YP_785835.1 CDS BAV1315 NC_010645.1 1392928 1394403 D phage portal protein 1392928..1394403 Bordetella avium 197N 6265308 YP_785836.1 CDS BAV1316 NC_010645.1 1394348 1395196 D phage head protein 1394348..1395196 Bordetella avium 197N 6265309 YP_785837.1 CDS BAV1317 NC_010645.1 1395189 1396439 D phage protein 1395189..1396439 Bordetella avium 197N 6265310 YP_785838.1 CDS BAV1318 NC_010645.1 1396442 1396909 D encodes major structural protein, as shown by N-terminal sequencing of purified protein in L. Temple's lab; phage structural protein 1396442..1396909 Bordetella avium 197N 6265311 YP_785839.1 CDS BAV1319 NC_010645.1 1396925 1398004 D phage protein 1396925..1398004 Bordetella avium 197N 6265312 YP_785840.1 CDS BAV1320 NC_010645.1 1398114 1398455 D phage protein 1398114..1398455 Bordetella avium 197N 6265313 YP_785841.1 CDS BAV1321 NC_010645.1 1398457 1398882 D phage protein 1398457..1398882 Bordetella avium 197N 6265314 YP_785842.1 CDS BAV1322 NC_010645.1 1398879 1399355 D phage protein 1398879..1399355 Bordetella avium 197N 6265315 YP_785843.1 CDS BAV1323 NC_010645.1 1399352 1399735 D phage protein 1399352..1399735 Bordetella avium 197N 6265316 YP_785844.1 CDS BAV1324 NC_010645.1 1399716 1400243 D No significant database similarities; phage protein 1399716..1400243 Bordetella avium 197N 6265317 YP_785845.1 CDS BAV1325 NC_010645.1 1400252 1401760 D phage protein 1400252..1401760 Bordetella avium 197N 6265318 YP_785846.1 CDS BAV1326 NC_010645.1 1401820 1402281 D phage protein 1401820..1402281 Bordetella avium 197N 6265319 YP_785847.1 CDS BAV1327 NC_010645.1 1402293 1402718 D phage protein 1402293..1402718 Bordetella avium 197N 6265320 YP_785848.1 CDS BAV1328 NC_010645.1 1402763 1402837 D phage protein 1402763..1402837 Bordetella avium 197N 6265321 YP_785849.1 CDS BAV1329 NC_010645.1 1402839 1404452 D phage tail tape-measure protein 1402839..1404452 Bordetella avium 197N 6265322 YP_785850.1 CDS BAV1330 NC_010645.1 1404449 1405000 D phage protein 1404449..1405000 Bordetella avium 197N 6265323 YP_785851.1 CDS BAV1331 NC_010645.1 1404988 1405299 D phage protein 1404988..1405299 Bordetella avium 197N 6265324 YP_785852.1 CDS BAV1332 NC_010645.1 1405289 1406116 D phage protein 1405289..1406116 Bordetella avium 197N 6265325 YP_785853.1 CDS BAV1333 NC_010645.1 1406101 1406808 D phage baseplate protein 1406101..1406808 Bordetella avium 197N 6265326 YP_785854.1 CDS BAV1334 NC_010645.1 <1406805 1407149 D phage protein <1406805..1407149 Bordetella avium 197N 6265327 YP_785855.1 CDS BAV1335 NC_010645.1 1407142 1408332 D phage protein 1407142..1408332 Bordetella avium 197N 6265328 YP_785856.1 CDS BAV1336 NC_010645.1 1408329 1408979 D phage protein 1408329..1408979 Bordetella avium 197N 6265329 YP_785857.1 CDS BAV1337 NC_010645.1 1408982 1410130 D N-terminus similar to phage tail proteins, such as Burkholderia cenocepacia phage BcepB1A tail fiber protein; C-terminus similar to glycine-rich proteins, such as Epstein-Barr virus; ebna-1 nuclear protein; bkrf1 and Mycobacterium tuberculosis H37Rv; pe-pgrs family protein; pe_pgrs13; phage tail fiber protein 1408982..1410130 Bordetella avium 197N 6265330 YP_785858.1 CDS BAV1337A NC_010645.1 1410130 1410300 D phage protein 1410130..1410300 Bordetella avium 197N 6265331 YP_785859.1 CDS BAV1337B NC_010645.1 1410369 1410602 D phage protein 1410369..1410602 Bordetella avium 197N 6265332 YP_785860.1 CDS BAV1338 NC_010645.1 1410595 1411050 D phage lysozyme 1410595..1411050 Bordetella avium 197N 6265333 YP_785861.1 CDS BAV1339A NC_010645.1 <1411047 1411529 D phage tail assembly protein <1411047..1411529 Bordetella avium 197N 6265334 YP_785862.1 CDS BAV1340 NC_010645.1 1411724 1411993 R phage protein complement(1411724..1411993) Bordetella avium 197N 6265335 YP_785863.1 CDS BAV1341 NC_010645.1 1412027 1412272 R phage protein complement(1412027..1412272) Bordetella avium 197N 6265336 YP_785864.1 CDS BAV1342 NC_010645.1 1412328 >1412495 R phage protein complement(1412328..>1412495) Bordetella avium 197N 6265337 YP_785865.1 CDS BAV1343 NC_010645.1 1413148 1414332 R transporter complement(1413148..1414332) Bordetella avium 197N 6267775 YP_785866.1 CDS gph NC_010645.1 1414538 1415215 R phosphoglycolate phosphatase complement(1414538..1415215) Bordetella avium 197N 6265339 YP_785867.1 CDS pufX NC_010645.1 1415212 1415937 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(1415212..1415937) Bordetella avium 197N 6267109 YP_785868.1 CDS ompA NC_010645.1 1416012 1416596 R Previously sequenced as Bordetella avium outer membrane protein a precursor ompA SWALL:OMPA_BORAV (SWALL:Q05146) (194 aa) fasta scores: E(): 1.7e-71, 100 id in 194 aa; outer membrane protein A complement(1416012..1416596) Bordetella avium 197N 6267593 YP_785869.1 CDS gyrA NC_010645.1 1416988 1419639 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1416988..1419639 Bordetella avium 197N 6267458 YP_785870.1 CDS pdxF NC_010645.1 1419647 1420777 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1419647..1420777 Bordetella avium 197N 6267140 YP_785871.1 CDS pheA NC_010645.1 1420770 1421852 D P-protein (includes chorismate mutase and prephenate dehydratase) 1420770..1421852 Bordetella avium 197N 6267495 YP_785872.1 CDS hisC1 NC_010645.1 1421872 1422993 D histidinol-phosphate aminotransferase 1421872..1422993 Bordetella avium 197N 6267524 YP_785873.1 CDS tyrA NC_010645.1 1422990 1423883 D prephenate dehydrogenase 1422990..1423883 Bordetella avium 197N 6267171 YP_785874.1 CDS aroA NC_010645.1 1423883 1425202 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1423883..1425202 Bordetella avium 197N 6267905 YP_785875.1 CDS cmk NC_010645.1 1425221 1425889 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1425221..1425889 Bordetella avium 197N 6266654 YP_785876.1 CDS rpsA NC_010645.1 1426148 1427860 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1426148..1427860 Bordetella avium 197N 6266796 YP_785877.1 CDS himD NC_010645.1 <1427863 1428222 D integration host factor subunit beta <1427863..1428222 Bordetella avium 197N 6267710 YP_785878.1 CDS BAV1356 NC_010645.1 1428387 1428695 D membrane protein 1428387..1428695 Bordetella avium 197N 6267168 YP_785879.1 CDS BAV1357 NC_010645.1 <1428730 1429959 D tetratricopeptide repeat protein <1428730..1429959 Bordetella avium 197N 6265340 YP_785880.1 CDS hldE' NC_010645.1 1429956 1430897 D Similar to N-terminal half of Escherichia coli bifunctional protein HldE [includes: D-beta-d-heptose 7-phosphate kinase (EC 2.7.1.-); d-beta-d- heptose 1-phosphate adenosyltransferase (EC 2.7.7.-)] HldE SWALL:HLDE_ECOLI (SWALL:P76658) (477 aa) fasta scores: E(): 5.6e-48, 54.09 38d in 305 aa; D-beta-d-heptose 7-phosphate kinase 1429956..1430897 Bordetella avium 197N 6265341 YP_785881.1 CDS hldD NC_010645.1 1430894 1431892 D ADP-L-glycero-D-manno-heptose-6-epimerase 1430894..1431892 Bordetella avium 197N 6267183 YP_785882.1 CDS BAV1360 NC_010645.1 1431996 1432385 D hypothetical protein 1431996..1432385 Bordetella avium 197N 6267182 YP_785883.1 CDS cysM NC_010645.1 1432449 1433360 D catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1432449..1433360 Bordetella avium 197N 6265342 YP_785884.1 CDS mltB NC_010645.1 1433406 1434545 R membrane-bound lytic murein transglycosylase B complement(1433406..1434545) Bordetella avium 197N 6266844 YP_785885.1 CDS BAV1363 NC_010645.1 1434565 1435479 D histone deacetylase family protein 1434565..1435479 Bordetella avium 197N 6267359 YP_785886.1 CDS etfB1 NC_010645.1 1435550 1436299 D Also similar to- BAV3265 (81.9); electron transfer flavoprotein subunit beta 1435550..1436299 Bordetella avium 197N 6265343 YP_785887.1 CDS etfA1 NC_010645.1 1436302 1437231 D Also similar to BAV3266 (81.9); electron transfer flavoprotein subunit alpha 1436302..1437231 Bordetella avium 197N 6266936 YP_785888.1 CDS aspT NC_010645.1 1437547 1439244 D aspartate:alanine antiporter 1437547..1439244 Bordetella avium 197N 6266934 YP_785889.1 CDS BAV1367 NC_010645.1 1439294 1441114 D acyl-CoA dehydrogenase 1439294..1441114 Bordetella avium 197N 6266673 YP_785890.1 CDS BAV1368 NC_010645.1 1441216 1441857 D antioxidant protein 1441216..1441857 Bordetella avium 197N 6265344 YP_785891.1 CDS BAV1369 NC_010645.1 1441997 1442164 D hypothetical protein 1441997..1442164 Bordetella avium 197N 6265345 YP_785892.1 CDS BAV1370 NC_010645.1 1442349 1443935 D radical SAM protein 1442349..1443935 Bordetella avium 197N 6265346 YP_785893.1 CDS BAV1371 NC_010645.1 1444043 1444276 D hypothetical protein 1444043..1444276 Bordetella avium 197N 6265347 YP_785894.1 CDS BAV1372 NC_010645.1 1444284 1445156 R membrane protein complement(1444284..1445156) Bordetella avium 197N 6265348 YP_785895.1 CDS rplS NC_010645.1 1445401 1445790 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1445401..1445790 Bordetella avium 197N 6265349 YP_785896.1 CDS BAV1374 NC_010645.1 1445953 1446663 D hydrolase 1445953..1446663 Bordetella avium 197N 6267689 YP_785897.1 CDS hyi NC_010645.1 1446670 1447461 R hydroxypyruvate isomerase complement(1446670..1447461) Bordetella avium 197N 6265350 YP_785898.1 CDS engC NC_010645.1 1447487 1448383 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(1447487..1448383) Bordetella avium 197N 6267224 YP_785899.1 CDS BAV1377 NC_010645.1 1448380 1449639 R membrane-associated protease complement(1448380..1449639) Bordetella avium 197N 6266924 YP_785900.1 CDS orn NC_010645.1 1449694 1450239 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1449694..1450239 Bordetella avium 197N 6265351 YP_785901.1 CDS paaX NC_010645.1 1450435 1451358 R phenylacetic acid degradation operon negative regulatory protein complement(1450435..1451358) Bordetella avium 197N 6267463 YP_785902.1 CDS paaA NC_010645.1 1451517 1452506 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 1451517..1452506 Bordetella avium 197N 6267477 YP_785903.1 CDS paaB NC_010645.1 1452566 1452850 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 1452566..1452850 Bordetella avium 197N 6267467 YP_785904.1 CDS paaC NC_010645.1 1452860 1453624 D phenylacetic acid degradation protein 1452860..1453624 Bordetella avium 197N 6267468 YP_785905.1 CDS paaD NC_010645.1 <1453621 1454121 D phenylacetic acid degradation protein <1453621..1454121 Bordetella avium 197N 6267469 YP_785906.1 CDS paaE NC_010645.1 1454133 1455221 D phenylacetic acid degradation NADH oxidoreductase 1454133..1455221 Bordetella avium 197N 6267470 YP_785907.1 CDS paaZ NC_010645.1 1455275 1456939 D phenylacetic acid degradation aldehyde dehydrogenase 1455275..1456939 Bordetella avium 197N 6267471 YP_785908.1 CDS paaG NC_010645.1 1456950 1457738 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1456950..1457738 Bordetella avium 197N 6267478 YP_785909.1 CDS paaI NC_010645.1 1457738 1458202 D phenylacetic acid degradation protein 1457738..1458202 Bordetella avium 197N 6267472 YP_785910.1 CDS paaK NC_010645.1 1458266 1459582 D phenylacetate-coenzyme A ligase 1458266..1459582 Bordetella avium 197N 6267473 YP_785911.1 CDS BAV1389 NC_010645.1 1459829 1460062 R hypothetical protein complement(1459829..1460062) Bordetella avium 197N 6267476 YP_785912.1 CDS BAV1390 NC_010645.1 1460218 >1460559 R hypothetical protein complement(1460218..>1460559) Bordetella avium 197N 6265352 YP_785913.1 CDS hemN NC_010645.1 1460560 1461939 D oxygen-independent coproporphyrinogen III oxidase 1460560..1461939 Bordetella avium 197N 6265353 YP_785914.1 CDS BAV1392 NC_010645.1 1461940 1462683 R two-component response regulator complement(1461940..1462683) Bordetella avium 197N 6267160 YP_785915.1 CDS thrS NC_010645.1 1463149 1465101 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1463149..1465101 Bordetella avium 197N 6265354 YP_785916.1 CDS infC NC_010645.1 <1465173 1465670 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 <1465173..1465670 Bordetella avium 197N 6267809 YP_785917.1 CDS gsh-II NC_010645.1 1465826 1466782 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 1465826..1466782 Bordetella avium 197N 6266982 YP_785918.1 CDS BAV1396 NC_010645.1 1466796 1467194 D PTS system IIa component 1466796..1467194 Bordetella avium 197N 6267120 YP_785919.1 CDS phbH NC_010645.1 1467279 1467548 D phosphocarrier protein HPr 1467279..1467548 Bordetella avium 197N 6265355 YP_785920.1 CDS ptsI NC_010645.1 1467577 1469346 D phosphoenolpyruvate-protein phosphotransferase 1467577..1469346 Bordetella avium 197N 6267523 YP_785921.1 CDS mntH NC_010645.1 1469377 1470645 R manganese transport protein complement(1469377..1470645) Bordetella avium 197N 6267591 YP_785922.1 CDS BAV1400 NC_010645.1 1470797 1471732 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 1470797..1471732 Bordetella avium 197N 6267365 YP_785923.1 CDS BAV1401 NC_010645.1 1471830 1472993 D ABC transporter substrate binding protein 1471830..1472993 Bordetella avium 197N 6265356 YP_785924.1 CDS dut NC_010645.1 1473159 1473608 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(1473159..1473608) Bordetella avium 197N 6265357 YP_785925.1 CDS BAV1403 NC_010645.1 1473647 1474093 R membrane protein complement(1473647..1474093) Bordetella avium 197N 6266897 YP_785926.1 CDS BAV1404 NC_010645.1 1474105 1474740 R membrane protein complement(1474105..1474740) Bordetella avium 197N 6265358 YP_785927.1 CDS BAV1405 NC_010645.1 1474830 1475861 D membrane-bound metal-dependent hydrolase 1474830..1475861 Bordetella avium 197N 6265359 YP_785928.1 CDS pepE NC_010645.1 1475871 1476578 D alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 1475871..1476578 Bordetella avium 197N 6265360 YP_785929.1 CDS BAV1407 NC_010645.1 1476729 1477199 R AsnC family transcriptional regulator complement(1476729..1477199) Bordetella avium 197N 6267500 YP_785930.1 CDS BAV1408 NC_010645.1 <1477263 1478261 D permease <1477263..1478261 Bordetella avium 197N 6265361 YP_785931.1 CDS coaBC NC_010645.1 1478277 1479473 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(1478277..1479473) Bordetella avium 197N 6265362 YP_785932.1 CDS lspA NC_010645.1 1479522 1480037 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(1479522..1480037) Bordetella avium 197N 6267964 YP_785933.1 CDS ileS NC_010645.1 1480040 1482901 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(1480040..1482901) Bordetella avium 197N 6266797 YP_785934.1 CDS ribF NC_010645.1 1482891 >1483856 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(1482891..>1483856) Bordetella avium 197N 6267233 YP_785935.1 CDS purN NC_010645.1 1483905 1484573 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1483905..1484573 Bordetella avium 197N 6267654 YP_785936.1 CDS BAV1414 NC_010645.1 1484613 1486064 D S-adenosyl-l-methionine transferase 1484613..1486064 Bordetella avium 197N 6267603 YP_785937.1 CDS BAV1415 NC_010645.1 1486071 1486436 R hypothetical protein complement(1486071..1486436) Bordetella avium 197N 6265363 YP_785938.1 CDS BAV1416 NC_010645.1 1486687 1487895 D stearoyl-CoA desaturase 1486687..1487895 Bordetella avium 197N 6265364 YP_785939.1 CDS mutU NC_010645.1 1487892 1490144 D DNA helicase II 1487892..1490144 Bordetella avium 197N 6265365 YP_785940.1 CDS BAV1418 NC_010645.1 1490500 >1492422 R ABC transporter ATP-binding protein complement(1490500..>1492422) Bordetella avium 197N 6267407 YP_785941.1 CDS BAV1419 NC_010645.1 1492419 1493309 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(1492419..1493309) Bordetella avium 197N 6265366 YP_785942.1 CDS dapE NC_010645.1 1493316 1494449 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(1493316..1494449) Bordetella avium 197N 6265367 YP_785943.1 CDS dapD NC_010645.1 1494449 1495270 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(1494449..1495270) Bordetella avium 197N 6266859 YP_785944.1 CDS dapC NC_010645.1 1495294 1496484 R catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase complement(1495294..1496484) Bordetella avium 197N 6266858 YP_785945.1 CDS BAV1423 NC_010645.1 1496816 >1497934 R phage integrase complement(1496816..>1497934) Bordetella avium 197N 6267869 YP_785946.1 CDS BAV1423A NC_010645.1 1497904 1498266 R phage excisionase complement(1497904..1498266) Bordetella avium 197N 6265368 YP_785947.1 CDS BAV1423B NC_010645.1 1498263 1498523 R phage protein complement(1498263..1498523) Bordetella avium 197N 6265369 YP_785948.1 CDS BAV1423C NC_010645.1 1498558 1498731 R phage protein complement(1498558..1498731) Bordetella avium 197N 6265370 YP_785949.1 CDS recT NC_010645.1 1498810 1499841 R phage recombination protein complement(1498810..1499841) Bordetella avium 197N 6265371 YP_785950.1 CDS BAV1425 NC_010645.1 1499838 1500692 R phage protein complement(1499838..1500692) Bordetella avium 197N 6267634 YP_785951.1 CDS BAV1426 NC_010645.1 1500696 1500881 R phage protein complement(1500696..1500881) Bordetella avium 197N 6265372 YP_785952.1 CDS BAV1427 NC_010645.1 1500878 1501165 R phage protein complement(1500878..1501165) Bordetella avium 197N 6265373 YP_785953.1 CDS BAV1428 NC_010645.1 1501235 1501984 R antirepressor complement(1501235..1501984) Bordetella avium 197N 6265374 YP_785954.1 CDS BAV1429 NC_010645.1 1502337 1502600 D hypothetical gene not on same strand as others in the region; phage protein 1502337..1502600 Bordetella avium 197N 6265375 YP_785955.1 CDS BAV1430 NC_010645.1 1502601 1502726 R phage protein complement(1502601..1502726) Bordetella avium 197N 6265376 YP_785956.1 CDS BAV1431 NC_010645.1 1502778 >1503002 R phage protein complement(1502778..>1503002) Bordetella avium 197N 6265377 YP_785957.1 CDS BAV1432 NC_010645.1 1503034 >1503126 R phage protein complement(1503034..>1503126) Bordetella avium 197N 6265378 YP_785958.1 CDS BAV1434 NC_010645.1 1503554 1504108 R phage protein complement(1503554..1504108) Bordetella avium 197N 6265379 YP_785959.1 CDS BAV1435 NC_010645.1 1504110 1504532 R phage protein complement(1504110..1504532) Bordetella avium 197N 6265380 YP_785960.1 CDS BAV1436 NC_010645.1 1504791 1505153 R phage repressor complement(1504791..1505153) Bordetella avium 197N 6265381 YP_785961.1 CDS BAV1437 NC_010645.1 1505226 1505447 D outside B. bronchiseptica; phage protein 1505226..1505447 Bordetella avium 197N 6265382 YP_785962.1 CDS BAV1438 NC_010645.1 1505440 1505706 D phage protein 1505440..1505706 Bordetella avium 197N 6265383 YP_785963.1 CDS BAV1439 NC_010645.1 1505784 1506224 R phage protein complement(1505784..1506224) Bordetella avium 197N 6265384 YP_785964.1 CDS BAV1440 NC_010645.1 1506268 1506531 D phage protein 1506268..1506531 Bordetella avium 197N 6265385 YP_785965.1 CDS BAV1441 NC_010645.1 1506863 1507249 R phage protein complement(1506863..1507249) Bordetella avium 197N 6265386 YP_785966.1 CDS BAV1442 NC_010645.1 1507333 1507731 D phage protein 1507333..1507731 Bordetella avium 197N 6265387 YP_785967.1 CDS BAV1442A NC_010645.1 1507743 1507922 D phage protein 1507743..1507922 Bordetella avium 197N 6265388 YP_785968.1 CDS BAV1443 NC_010645.1 1508037 1508519 D phage protein 1508037..1508519 Bordetella avium 197N 6265389 YP_785969.1 CDS BAV1444 NC_010645.1 <1508516 1508767 D phage protein <1508516..1508767 Bordetella avium 197N 6265390 YP_785970.1 CDS BAV1445 NC_010645.1 1508764 1509708 D phage protein 1508764..1509708 Bordetella avium 197N 6265391 YP_785971.1 CDS BAV1446 NC_010645.1 1509705 1510187 D phage protein 1509705..1510187 Bordetella avium 197N 6265392 YP_785972.1 CDS BAV1447 NC_010645.1 1510184 1510837 D phage protein 1510184..1510837 Bordetella avium 197N 6265393 YP_785973.1 CDS BAV1448 NC_010645.1 1510830 1511147 D phage protein 1510830..1511147 Bordetella avium 197N 6265394 YP_785974.1 CDS BAV1449 NC_010645.1 1511064 1511435 R hypothetical gene located on opposite strand from others in this region; phage protein complement(1511064..1511435) Bordetella avium 197N 6265395 YP_785975.1 CDS BAV1450 NC_010645.1 1511680 1512012 D phage protein 1511680..1512012 Bordetella avium 197N 6265396 YP_785976.1 CDS BAV1451 NC_010645.1 1512012 1512413 D Similar to the N-terminal region of Bacteriophage T4 DNA packaging protein gp17 17 SWALL:VG17_BPT4 (SWALL:P17312) (610 aa) fasta scores: E(): 7.7, 25 38d in 124 aa; phage protein 1512012..1512413 Bordetella avium 197N 6265397 YP_785977.1 CDS BAV1452 NC_010645.1 1512410 1512697 D phage protein 1512410..1512697 Bordetella avium 197N 6265398 YP_785978.1 CDS BAV1453 NC_010645.1 1512701 1513204 R hypothetical gene located on opposite strand from others in this region; phage protein complement(1512701..1513204) Bordetella avium 197N 6265399 YP_785979.1 CDS BAV1454 NC_010645.1 1513524 1514648 D phage protein 1513524..1514648 Bordetella avium 197N 6265400 YP_785980.1 CDS BAV1454A NC_010645.1 1514705 1515034 D phage protein 1514705..1515034 Bordetella avium 197N 6265401 YP_785981.1 CDS BAV1455 NC_010645.1 1515064 1515342 R phage protein complement(1515064..1515342) Bordetella avium 197N 6265402 YP_785982.1 CDS BAV1456 NC_010645.1 1515329 1515595 R phage protein complement(1515329..1515595) Bordetella avium 197N 6265403 YP_785983.1 CDS BAV1457 NC_010645.1 1515776 1516159 D phage protein 1515776..1516159 Bordetella avium 197N 6265404 YP_785984.1 CDS BAV1459 NC_010645.1 <1516356 1516838 D terminase small subunit <1516356..1516838 Bordetella avium 197N 6265406 YP_785985.1 CDS BAV1460 NC_010645.1 1516839 1518566 D terminase large subunit 1516839..1518566 Bordetella avium 197N 6265407 YP_785986.1 CDS BAV1461 NC_010645.1 1518568 1518723 D phage protein 1518568..1518723 Bordetella avium 197N 6265408 YP_785987.1 CDS BAV1462 NC_010645.1 1518720 1519952 D phage portal protein 1518720..1519952 Bordetella avium 197N 6265409 YP_785988.1 CDS BAV1463 NC_010645.1 1519961 1520578 D phage capsid protease 1519961..1520578 Bordetella avium 197N 6265410 YP_785989.1 CDS BAV1464 NC_010645.1 1520591 1521814 D major capsid protein 1520591..1521814 Bordetella avium 197N 6265411 YP_785990.1 CDS BAV1465 NC_010645.1 <1521822 1522172 D phage protein <1521822..1522172 Bordetella avium 197N 6265412 YP_785991.1 CDS BAV1466 NC_010645.1 1522183 1522521 D head-tail adaptor protein 1522183..1522521 Bordetella avium 197N 6265413 YP_785992.1 CDS BAV1467 NC_010645.1 1522518 1523012 D phage protein 1522518..1523012 Bordetella avium 197N 6265414 YP_785993.1 CDS BAV1468 NC_010645.1 1523005 1523355 D phage protein 1523005..1523355 Bordetella avium 197N 6265415 YP_785994.1 CDS BAV1469 NC_010645.1 <1523352 1523795 D phage protein <1523352..1523795 Bordetella avium 197N 6265416 YP_785995.1 CDS BAV1470 NC_010645.1 1523867 1524514 D major tail protein 1523867..1524514 Bordetella avium 197N 6265417 YP_785996.1 CDS BAV1471 NC_010645.1 1524548 1524865 D phage protein 1524548..1524865 Bordetella avium 197N 6265418 YP_785997.1 CDS BAV1472 NC_010645.1 1524865 1525173 D phage protein 1524865..1525173 Bordetella avium 197N 6265419 YP_785998.1 CDS BAV1473 NC_010645.1 1525196 1530745 D phage tail tape measure protein 1525196..1530745 Bordetella avium 197N 6265420 YP_785999.1 CDS BAV1474 NC_010645.1 1530742 1531632 D phage protein 1530742..1531632 Bordetella avium 197N 6265421 YP_786000.1 CDS BAV1475 NC_010645.1 1531634 1532563 D phage protein 1531634..1532563 Bordetella avium 197N 6265422 YP_786001.1 CDS BAV1476 NC_010645.1 1532570 1532962 D phage protein 1532570..1532962 Bordetella avium 197N 6265423 YP_786002.1 CDS BAV1477 NC_010645.1 <1532959 1533327 D ; besides other Bordetellae; phage protein <1532959..1533327 Bordetella avium 197N 6265424 YP_786003.1 CDS BAV1478 NC_010645.1 1533328 1534149 D phage protein 1533328..1534149 Bordetella avium 197N 6265425 YP_786004.1 CDS BAV1479 NC_010645.1 1534154 1534369 D phage protein 1534154..1534369 Bordetella avium 197N 6265426 YP_786005.1 CDS BAV1480 NC_010645.1 1534369 1534920 D phage lysozyme 1534369..1534920 Bordetella avium 197N 6265427 YP_786006.1 CDS BAV1480A NC_010645.1 1534964 1535488 R phage protein complement(1534964..1535488) Bordetella avium 197N 6265428 YP_786007.1 CDS BAV1481 NC_010645.1 1535707 1536228 D phage protein 1535707..1536228 Bordetella avium 197N 6265429 YP_786008.1 CDS BAV1482 NC_010645.1 1536357 1536641 R except other Bordetellae. Similar to N-terminal region of the Bordetellae proteins; phage protein complement(1536357..1536641) Bordetella avium 197N 6265430 YP_786009.1 CDS BAV1483 NC_010645.1 1537083 1537295 D hypothetical protein 1537083..1537295 Bordetella avium 197N 6265431 YP_786010.1 CDS BAV1484 NC_010645.1 1537594 1537971 D membrane protein 1537594..1537971 Bordetella avium 197N 6265432 YP_786011.1 CDS BAV1485 NC_010645.1 1538352 1538540 R hypothetical protein complement(1538352..1538540) Bordetella avium 197N 6265433 YP_786012.1 CDS BAV1486 NC_010645.1 1538731 1539051 R hypothetical protein complement(1538731..1539051) Bordetella avium 197N 6265434 YP_786013.1 CDS BAV1487 NC_010645.1 1539048 1539347 R hypothetical protein complement(1539048..1539347) Bordetella avium 197N 6265435 YP_786014.1 CDS BAV1488 NC_010645.1 1539927 1540160 D hemolysin 1539927..1540160 Bordetella avium 197N 6265436 YP_786015.1 CDS BAV1489 NC_010645.1 1540348 1542105 R ABC transporter ATP-binding protein complement(1540348..1542105) Bordetella avium 197N 6265437 YP_786016.1 CDS BAV1490 NC_010645.1 1542572 1542832 R Similar only to exported proteins in Bordetellae; hypothetical protein complement(1542572..1542832) Bordetella avium 197N 6265438 YP_786017.1 CDS BAV1491 NC_010645.1 1543052 1543372 D outside the Bordetellae; hypothetical protein 1543052..1543372 Bordetella avium 197N 6265439 YP_786018.1 CDS cspA1 NC_010645.1 1543680 1543883 D Also similar to BAV2327, BAV1494, BAV2092 and BAV3424.; cold shock-like protein 1543680..1543883 Bordetella avium 197N 6265440 YP_786019.1 CDS BAV1493 NC_010645.1 1544161 1544706 D hypothetical protein 1544161..1544706 Bordetella avium 197N 6266814 YP_786020.1 CDS cspA2 NC_010645.1 1544962 1545168 D Also similar to BAV1492, BAV2327, BAV2092 and BAV3424.; cold shock-like protein 1544962..1545168 Bordetella avium 197N 6265441 YP_786021.1 CDS BAV1495 NC_010645.1 1545238 1545816 R hypothetical protein complement(1545238..1545816) Bordetella avium 197N 6266815 YP_786022.1 CDS tig NC_010645.1 1545996 1547306 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1545996..1547306 Bordetella avium 197N 6265442 YP_786023.1 CDS clpP NC_010645.1 1547309 1547962 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1547309..1547962 Bordetella avium 197N 6267811 YP_786024.1 CDS clpX NC_010645.1 1548066 1549364 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1548066..1549364 Bordetella avium 197N 6266792 YP_786025.1 CDS capR NC_010645.1 1549539 1551971 D ATP-dependent protease La 1549539..1551971 Bordetella avium 197N 6266794 YP_786026.1 CDS BAV1500 NC_010645.1 1552207 1553703 R GntR family transcriptional regulator complement(1552207..1553703) Bordetella avium 197N 6266754 YP_786027.1 CDS benE NC_010645.1 1553811 1555055 D benzoate membrane transport protein 1553811..1555055 Bordetella avium 197N 6265443 YP_786028.1 CDS sotB NC_010645.1 1555215 1556408 R sugar efflux transporter complement(1555215..1556408) Bordetella avium 197N 6266697 YP_786029.1 CDS exra NC_010645.1 1556854 1557495 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(1556854..1557495) Bordetella avium 197N 6267764 YP_786030.1 CDS tyrB NC_010645.1 1557796 1558998 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(1557796..1558998) Bordetella avium 197N 6266943 YP_786031.1 CDS uvrB NC_010645.1 1559074 1561104 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1559074..1561104 Bordetella avium 197N 6267906 YP_786032.1 CDS ptpA NC_010645.1 1561354 1561845 D low molecular weight protein-tyrosine-phosphatase 1561354..1561845 Bordetella avium 197N 6267923 YP_786033.1 CDS BAV1507 NC_010645.1 1562035 1562568 D DNA-binding protein 1562035..1562568 Bordetella avium 197N 6267590 YP_786034.1 CDS iscS NC_010645.1 1562590 1563801 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1562590..1563801 Bordetella avium 197N 6265444 YP_786035.1 CDS iscU NC_010645.1 1563838 1564242 D scaffold protein 1563838..1564242 Bordetella avium 197N 6267251 YP_786036.1 CDS iscA NC_010645.1 1564244 1564567 D iron-sulfur cluster assembly protein 1564244..1564567 Bordetella avium 197N 6267252 YP_786037.1 CDS hscB NC_010645.1 1564571 1565077 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1564571..1565077 Bordetella avium 197N 6267250 YP_786038.1 CDS hscA NC_010645.1 <1565077 1566972 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA <1565077..1566972 Bordetella avium 197N 6267208 YP_786039.1 CDS fdx NC_010645.1 1566981 1567322 D ferredoxin, 2Fe-2S 1566981..1567322 Bordetella avium 197N 6267207 YP_786040.1 CDS BAV1514 NC_010645.1 1567322 1567516 D hypothetical protein 1567322..1567516 Bordetella avium 197N 6266966 YP_786041.1 CDS mgsA NC_010645.1 1567631 1568527 D Similar over its C-terminal region to many methylglyoxal synthases including Escherichia coli,Escherichia coli O157:H7, and Shigella flexneri methylglyoxal synthase mgsA SWALL:MGSA_ECOLI (SWALL:P37066) (152 aa) fasta scores: E(): 0.03, 32.57 38d in 132 aa; methylglyoxal synthase 1567631..1568527 Bordetella avium 197N 6265445 YP_786042.1 CDS BAV1516 NC_010645.1 1568572 1568859 R membrane protein complement(1568572..1568859) Bordetella avium 197N 6267348 YP_786043.1 CDS lysS NC_010645.1 1568873 1570387 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(1568873..1570387) Bordetella avium 197N 6265446 YP_786044.1 CDS BAV1518 NC_010645.1 1570394 1571143 R short chain dehydrogenase complement(1570394..1571143) Bordetella avium 197N 6266675 YP_786045.1 CDS prfB NC_010645.1 1571194 1572298 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(join(1571194..1572216,1572218..1572298)) Bordetella avium 197N 6265447 YP_786046.1 CDS recJ NC_010645.1 1572405 >1574111 R single-stranded-DNA-specific exonuclease complement(1572405..>1574111) Bordetella avium 197N 6267569 YP_786047.1 CDS BAV1521 NC_010645.1 1574093 1575055 R hypothetical protein complement(1574093..1575055) Bordetella avium 197N 6267629 YP_786048.1 CDS lolE NC_010645.1 <1575159 1576439 D lipoprotein releasing system, transmembrane protein <1575159..1576439 Bordetella avium 197N 6265448 YP_786049.1 CDS lolD NC_010645.1 1576432 1577124 D lipoprotein releasing system, ATP-binding protein 1576432..1577124 Bordetella avium 197N 6267305 YP_786050.1 CDS BAV1524 NC_010645.1 1577127 1577927 D deoxyribonuclease 1577127..1577927 Bordetella avium 197N 6267304 YP_786051.1 CDS BAV1525 NC_010645.1 1578067 1578300 D hypothetical protein 1578067..1578300 Bordetella avium 197N 6265449 YP_786052.1 CDS BAV1526 NC_010645.1 1578333 1578911 D membrane protein 1578333..1578911 Bordetella avium 197N 6265450 YP_786053.1 CDS BAV1527 NC_010645.1 1578976 1581249 R aldehyde dehydrogenase complement(1578976..1581249) Bordetella avium 197N 6265451 YP_786054.1 CDS BAV1528 NC_010645.1 1581292 1581978 R hydrolase complement(1581292..1581978) Bordetella avium 197N 6265452 YP_786055.1 CDS BAV1529 NC_010645.1 1581975 1583048 R hypothetical protein complement(1581975..1583048) Bordetella avium 197N 6265453 YP_786056.1 CDS BAV1530 NC_010645.1 1583084 1583905 R alpha/beta hydrolase complement(1583084..1583905) Bordetella avium 197N 6265454 YP_786057.1 CDS maiA1 NC_010645.1 1583905 1584678 R Also similar to BAV2744 (79.68 38d); maleate cis-trans isomerase complement(1583905..1584678) Bordetella avium 197N 6265455 YP_786058.1 CDS BAV1532 NC_010645.1 <1584984 1586141 D salicylate hydroxylase <1584984..1586141 Bordetella avium 197N 6267326 YP_786059.1 CDS iorA NC_010645.1 1586229 1586750 D isoquinoline 1-oxidoreductase subunit alpha 1586229..1586750 Bordetella avium 197N 6265456 YP_786060.1 CDS BAV1534 NC_010645.1 1586747 1589542 D bifunctional protein,oxidoreductase/cytochrome subunits 1586747..1589542 Bordetella avium 197N 6267247 YP_786061.1 CDS BAV1535 NC_010645.1 1589603 1590919 D transporter 1589603..1590919 Bordetella avium 197N 6265457 YP_786062.1 CDS BAV1536 NC_010645.1 1590958 1591425 R MarR family transcriptional regulator complement(1590958..1591425) Bordetella avium 197N 6265458 YP_786063.1 CDS BAV1537 NC_010645.1 1591695 1592708 R LysR family transcriptional regulator complement(1591695..1592708) Bordetella avium 197N 6265459 YP_786064.1 CDS BAV1538 NC_010645.1 1592821 1594116 D transporter 1592821..1594116 Bordetella avium 197N 6265460 YP_786065.1 CDS BAV1539 NC_010645.1 1594132 1595634 D hypothetical protein 1594132..1595634 Bordetella avium 197N 6265461 YP_786066.1 CDS BAV1540 NC_010645.1 1595761 1596816 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1595761..1596816 Bordetella avium 197N 6265462 YP_786067.1 CDS BAV1541 NC_010645.1 1597094 1599361 D competence protein 1597094..1599361 Bordetella avium 197N 6265463 YP_786068.1 CDS BAV1542 NC_010645.1 1599453 1600718 R signaling protein complement(1599453..1600718) Bordetella avium 197N 6265464 YP_786069.1 CDS BAV1543 NC_010645.1 1601143 1602069 D D-(-)-3-hydroxybutyrate oligomer hydrolase 1601143..1602069 Bordetella avium 197N 6265465 YP_786070.1 CDS BAV1544 NC_010645.1 1602102 1602947 D phosphoesterase 1602102..1602947 Bordetella avium 197N 6265466 YP_786071.1 CDS greB NC_010645.1 1602997 1603560 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 1602997..1603560 Bordetella avium 197N 6265467 YP_786072.1 CDS purL NC_010645.1 <1603951 1607988 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase <1603951..1607988 Bordetella avium 197N 6267115 YP_786073.1 CDS BAV1549 NC_010645.1 <1609205 >1609384 D hypothetical protein <1609205..>1609384 Bordetella avium 197N 6265468 YP_786074.1 CDS BAV1550 NC_010645.1 <1609446 1609580 D hypothetical protein <1609446..1609580 Bordetella avium 197N 6265469 YP_786075.1 CDS BAV1551 NC_010645.1 1609779 1615820 D Similar to fhaS and fhaL of B. bronchiseptica. It is also located at the same position as B. bronchiseptica fhaS; filamentous hemagglutinin/adhesin 1609779..1615820 Bordetella avium 197N 6265470 YP_786076.1 CDS BAV1552 NC_010645.1 1615909 1617381 D amidohydrolase/peptidase 1615909..1617381 Bordetella avium 197N 6265471 YP_786077.1 CDS BAV1553 NC_010645.1 1617393 1617962 D hypothetical protein 1617393..1617962 Bordetella avium 197N 6265472 YP_786078.1 CDS BAV1554 NC_010645.1 1617967 1618407 R hypothetical protein complement(1617967..1618407) Bordetella avium 197N 6265473 YP_786079.1 CDS BAV1555 NC_010645.1 1618418 1619254 R hypothetical protein complement(1618418..1619254) Bordetella avium 197N 6265474 YP_786080.1 CDS BAV1556 NC_010645.1 1619346 1619933 R hypothetical protein complement(1619346..1619933) Bordetella avium 197N 6265475 YP_786081.1 CDS BAV1557 NC_010645.1 1619930 1620430 R hypothetical protein complement(1619930..1620430) Bordetella avium 197N 6265476 YP_786082.1 CDS BAV1558 NC_010645.1 1620430 1621734 R acyl coenzyme A thioester hydrolase complement(1620430..1621734) Bordetella avium 197N 6265477 YP_786083.1 CDS BAV1559 NC_010645.1 1621734 1623305 R ABC transporter substrate binding protein complement(1621734..1623305) Bordetella avium 197N 6265478 YP_786084.1 CDS BAV1560 NC_010645.1 1623339 1624346 R ABC transporter ATP-binding protein complement(1623339..1624346) Bordetella avium 197N 6265479 YP_786085.1 CDS BAV1561 NC_010645.1 1624343 1625347 R ABC transporter ATP-binding protein complement(1624343..1625347) Bordetella avium 197N 6265480 YP_786086.1 CDS BAV1562 NC_010645.1 1625344 1626249 R ABC transporter permease complement(1625344..1626249) Bordetella avium 197N 6265481 YP_786087.1 CDS BAV1563 NC_010645.1 1626246 1627220 R ABC transporter permease complement(1626246..1627220) Bordetella avium 197N 6265482 YP_786088.1 CDS BAV1564 NC_010645.1 1627217 1628674 R Also weakly similar to Escherichia coli L-lysine 6-monooxygenase iucD SWALL:IUCD_ECOLI (SWALL:P11295) (425 aa) fasta scores: E(): 0.19, 24.13 38d in 290 aa; monooxygenase complement(1627217..1628674) Bordetella avium 197N 6265483 YP_786089.1 CDS BAV1565 NC_010645.1 1628685 1629635 R LysR family transcriptional regulator complement(1628685..1629635) Bordetella avium 197N 6265484 YP_786090.1 CDS BAV1566 NC_010645.1 1629874 1630425 R hypothetical protein complement(1629874..1630425) Bordetella avium 197N 6265485 YP_786091.1 CDS guaB NC_010645.1 1630645 1632105 D inosine-5'-monophosphate dehydrogenase 1630645..1632105 Bordetella avium 197N 6265486 YP_786092.1 CDS guaA NC_010645.1 1632200 1633792 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1632200..1633792 Bordetella avium 197N 6267139 YP_786093.1 CDS BAV1572 NC_010645.1 1635075 1638548 R autotransporter complement(1635075..1638548) Bordetella avium 197N 6265487 YP_786094.1 CDS BAV1573 NC_010645.1 <1639738 1640970 D chromate transporter <1639738..1640970 Bordetella avium 197N 6265488 YP_786095.1 CDS BAV1574 NC_010645.1 1641103 1641678 R membrane protein complement(1641103..1641678) Bordetella avium 197N 6265489 YP_786096.1 CDS cutS NC_010645.1 1641949 1643178 R Similar over its N-terminal region to Hydrogenophaga pseudoflava carbon monoxide dehydrogenase small chain cutS SWALL:DCMS_HYDPS (SWALL:P19915) (163 aa) fasta scores: E(): 3.5e-22, 46.52 38d in 144 aa; iron-sulfur binding carbon monoxide dehydrogenase complement(1641949..1643178) Bordetella avium 197N 6265490 YP_786097.1 CDS cutM NC_010645.1 1643175 >1644041 R carbon monoxide dehydrogenase medium chain complement(1643175..>1644041) Bordetella avium 197N 6266825 YP_786098.1 CDS cutL NC_010645.1 1644038 1646467 R carbon monoxide dehydrogenase large chain complement(1644038..1646467) Bordetella avium 197N 6266824 YP_786099.1 CDS BAV1578 NC_010645.1 1646635 1648089 R C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter, permease complement(1646635..1648089) Bordetella avium 197N 6266822 YP_786100.1 CDS BAV1579 NC_010645.1 1648127 1648708 R C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter, permease complement(1648127..1648708) Bordetella avium 197N 6265491 YP_786101.1 CDS BAV1580 NC_010645.1 1648775 1649779 R C4 dicarboxylate tripartite ATP-independent periplasmic (TRAP) transporter,C4-dicarboxylate-binding component complement(1648775..1649779) Bordetella avium 197N 6265492 YP_786102.1 CDS BAV1581 NC_010645.1 1650180 1650488 D dioxygenase system, ferredoxin component 1650180..1650488 Bordetella avium 197N 6265493 YP_786103.1 CDS BAV1582 NC_010645.1 1650485 1651822 D dioxygenase system, reductase component 1650485..1651822 Bordetella avium 197N 6265494 YP_786104.1 CDS BAV1583 NC_010645.1 1651862 1653151 D dioxygenase system subunit alpha 1651862..1653151 Bordetella avium 197N 6265495 YP_786105.1 CDS BAV1584 NC_010645.1 1653201 1653725 D dioxygenase system subunit beta 1653201..1653725 Bordetella avium 197N 6265496 YP_786106.1 CDS BAV1585 NC_010645.1 1653815 1654369 R MarR family transcriptional regulator complement(1653815..1654369) Bordetella avium 197N 6265497 YP_786107.1 CDS BAV1586 NC_010645.1 1655412 1657022 D transporter 1655412..1657022 Bordetella avium 197N 6265498 YP_786108.1 CDS BAV1587 NC_010645.1 1657084 1658109 D hypothetical protein 1657084..1658109 Bordetella avium 197N 6265499 YP_786109.1 CDS BAV1588 NC_010645.1 1658321 1659358 R MerR family transcriptional regulator complement(1658321..1659358) Bordetella avium 197N 6265500 YP_786110.1 CDS BAV1589 NC_010645.1 1659454 1659828 D hypothetical protein 1659454..1659828 Bordetella avium 197N 6265501 YP_786111.1 CDS BAV1590 NC_010645.1 <1659926 1661542 D DNA photolyase <1659926..1661542 Bordetella avium 197N 6265502 YP_786112.1 CDS BAV1591 NC_010645.1 1661542 1662765 D deoxyribodipyrimidine photo-lyase 1661542..1662765 Bordetella avium 197N 6265503 YP_786113.1 CDS cho NC_010645.1 <1662762 1663667 D excinuclease <1662762..1663667 Bordetella avium 197N 6265504 YP_786114.1 CDS BAV1593 NC_010645.1 1663664 1664170 R flavin-dependent reductase complement(1663664..1664170) Bordetella avium 197N 6266786 YP_786115.1 CDS metE NC_010645.1 1664351 1665379 R catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase complement(1664351..1665379) Bordetella avium 197N 6265505 YP_786116.1 CDS BAV1595 NC_010645.1 1665403 1666386 R hypothetical protein complement(1665403..1666386) Bordetella avium 197N 6267335 YP_786117.1 CDS BAV1596 NC_010645.1 1666748 >1667119 R Partial CDS. Similar to C-terminal regions of two Bordetella autotransporters; autotransporter (partial) complement(1666748..>1667119) Bordetella avium 197N 6265506 YP_786118.1 CDS BAV1597 NC_010645.1 1667210 1667734 R acetyltransferase complement(1667210..1667734) Bordetella avium 197N 6265507 YP_786119.1 CDS folE NC_010645.1 1668011 1668742 R GTP cyclohydrolase complement(1668011..1668742) Bordetella avium 197N 6265508 YP_786120.1 CDS BAV1599 NC_010645.1 1668781 >1669728 R transcriptional regulator complement(1668781..>1669728) Bordetella avium 197N 6267027 YP_786121.1 CDS BAV1600 NC_010645.1 1670122 1670949 D hypothetical protein 1670122..1670949 Bordetella avium 197N 6265509 YP_786122.1 CDS pdxK NC_010645.1 1670978 1671868 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase 1670978..1671868 Bordetella avium 197N 6265510 YP_786123.1 CDS BAV1602 NC_010645.1 1671879 1673195 R GntR family transcriptional regulator complement(1671879..1673195) Bordetella avium 197N 6267498 YP_786124.1 CDS BAV1604 NC_010645.1 1674082 1678728 D hypothetical protein 1674082..1678728 Bordetella avium 197N 6265511 YP_786125.1 CDS BAV1605 NC_010645.1 1678809 1679507 R membrane protein complement(1678809..1679507) Bordetella avium 197N 6265512 YP_786126.1 CDS BAV1606 NC_010645.1 1679708 1680574 R carboxylesterase complement(1679708..1680574) Bordetella avium 197N 6265513 YP_786127.1 CDS BAV1607 NC_010645.1 1680571 1680987 R phage excisionase complement(1680571..1680987) Bordetella avium 197N 6265514 YP_786128.1 CDS BAV1608 NC_010645.1 1681177 1682343 R sugar efflux transporter complement(1681177..1682343) Bordetella avium 197N 6265515 YP_786129.1 CDS BAV1609 NC_010645.1 1682413 1682781 R ArsR family transcriptional regulator complement(1682413..1682781) Bordetella avium 197N 6265516 YP_786130.1 CDS lysP NC_010645.1 1683081 1684577 D lysine-specific permease 1683081..1684577 Bordetella avium 197N 6265517 YP_786131.1 CDS BAV1611 NC_010645.1 1684840 1686051 D transporter 1684840..1686051 Bordetella avium 197N 6267319 YP_786132.1 CDS BAV1612 NC_010645.1 1686561 1687295 D hypothetical protein 1686561..1687295 Bordetella avium 197N 6265518 YP_786133.1 CDS BAV1613 NC_010645.1 1687483 1688007 R outside the bordetellae; hypothetical protein complement(1687483..1688007) Bordetella avium 197N 6265519 YP_786134.1 CDS BAV1614 NC_010645.1 1688105 >1689259 R transporter complement(1688105..>1689259) Bordetella avium 197N 6265520 YP_786135.1 CDS BAV1615 NC_010645.1 1689388 1689846 D acetyltransferase 1689388..1689846 Bordetella avium 197N 6265521 YP_786136.1 CDS BAV1616 NC_010645.1 1689882 1690670 R hydratase complement(1689882..1690670) Bordetella avium 197N 6265522 YP_786137.1 CDS BAV1617 NC_010645.1 1690749 >1690862 R Partial CDS. Similar to the N-terminus of several dehydrogenases; dehydrogenase (fragment) complement(1690749..>1690862) Bordetella avium 197N 6265523 YP_786138.1 CDS BAV1618 NC_010645.1 1691583 1692434 D hypothetical protein 1691583..1692434 Bordetella avium 197N 6265524 YP_786139.1 CDS BAV1619 NC_010645.1 1692431 1692760 R lipoprotein complement(1692431..1692760) Bordetella avium 197N 6265525 YP_786140.1 CDS aroG1 NC_010645.1 1692824 1693924 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1692824..1693924) Bordetella avium 197N 6265526 YP_786141.1 CDS BAV1621 NC_010645.1 1693917 1694144 R hypothetical protein complement(1693917..1694144) Bordetella avium 197N 6266658 YP_786142.1 CDS gor NC_010645.1 1694172 1695530 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(1694172..1695530) Bordetella avium 197N 6265527 YP_786143.1 CDS BAV1623 NC_010645.1 1695647 1697107 R GntR family transcriptional regulator complement(1695647..1697107) Bordetella avium 197N 6267108 YP_786144.1 CDS BAV1624 NC_010645.1 1697224 1697937 D acetyltransferase 1697224..1697937 Bordetella avium 197N 6265528 YP_786145.1 CDS BAV1625 NC_010645.1 1697934 1698269 R thioredoxin complement(1697934..1698269) Bordetella avium 197N 6265529 YP_786146.1 CDS pckG NC_010645.1 1698535 1700400 D catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 1698535..1700400 Bordetella avium 197N 6265530 YP_786147.1 CDS BAV1627 NC_010645.1 1700397 1701002 D hypothetical protein 1700397..1701002 Bordetella avium 197N 6267489 YP_786148.1 CDS BAV1628 NC_010645.1 <1700999 1701802 D membrane protein <1700999..1701802 Bordetella avium 197N 6265531 YP_786149.1 CDS BAV1629 NC_010645.1 1701792 1702298 D hypothetical protein 1701792..1702298 Bordetella avium 197N 6265532 YP_786150.1 CDS BAV1630 NC_010645.1 1702466 1703143 D hypothetical protein 1702466..1703143 Bordetella avium 197N 6265533 YP_786151.1 CDS xthA NC_010645.1 1703648 1704433 R exodeoxyribonuclease III complement(1703648..1704433) Bordetella avium 197N 6267832 YP_786152.1 CDS cadA NC_010645.1 1704821 1707082 R cadmium-transporting ATPase complement(1704821..1707082) Bordetella avium 197N 6267947 YP_786153.1 CDS cadR NC_010645.1 1707187 1707621 D MerR family transcriptional regulator 1707187..1707621 Bordetella avium 197N 6266748 YP_786154.1 CDS BAV1634 NC_010645.1 1707752 1708339 D nitroreductase 1707752..1708339 Bordetella avium 197N 6266749 YP_786155.1 CDS argH NC_010645.1 1708402 1709814 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(1708402..1709814) Bordetella avium 197N 6265535 YP_786156.1 CDS BAV1636 NC_010645.1 1709921 1711240 D mechanosensitive ion channel forming protein 1709921..1711240 Bordetella avium 197N 6266649 YP_786157.1 CDS nadE NC_010645.1 1711277 1712905 D NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1711277..1712905 Bordetella avium 197N 6265536 YP_786158.1 CDS glnB NC_010645.1 <1712941 1713279 D nitrogen regulatory protein P-II <1712941..1713279 Bordetella avium 197N 6267411 YP_786159.1 CDS sphB1 NC_010645.1 1716590 >1719544 R ; Also similar to the adjacent pseudogene, BAV1640,(~50 identity).; autotransporter serine protease complement(1716590..>1719544) Bordetella avium 197N 6265537 YP_786160.1 CDS BAV1642 NC_010645.1 1719900 1720814 R LysR family transcriptional regulator complement(1719900..1720814) Bordetella avium 197N 6267766 YP_786161.1 CDS ggt NC_010645.1 1720934 1722562 D gamma-glutamyltranspeptidase 1720934..1722562 Bordetella avium 197N 6265539 YP_786162.1 CDS BAV1644 NC_010645.1 1722596 1724119 D ABC transporter substrate binding protein 1722596..1724119 Bordetella avium 197N 6267066 YP_786163.1 CDS BAV1645 NC_010645.1 1724189 1725133 D ABC transporter permease 1724189..1725133 Bordetella avium 197N 6265540 YP_786164.1 CDS BAV1646 NC_010645.1 1725130 1725999 D ABC transporter permease 1725130..1725999 Bordetella avium 197N 6265541 YP_786165.1 CDS BAV1647 NC_010645.1 1726018 1727865 D ABC transporter ATP-binding protein 1726018..1727865 Bordetella avium 197N 6265542 YP_786166.1 CDS BAV1648 NC_010645.1 1727990 >1728673 R LysE family efflux protein complement(1727990..>1728673) Bordetella avium 197N 6265543 YP_786167.1 CDS BAV1649 NC_010645.1 1728714 1729262 D hypothetical protein 1728714..1729262 Bordetella avium 197N 6265544 YP_786168.1 CDS BAV1650 NC_010645.1 1729425 1730021 R lyase complement(1729425..1730021) Bordetella avium 197N 6265545 YP_786169.1 CDS rluF NC_010645.1 1730072 1730803 D ribosomal large subunit pseudouridine synthase F 1730072..1730803 Bordetella avium 197N 6265546 YP_786170.1 CDS BAV1652 NC_010645.1 1730842 1731753 R LysR family transcriptional regulator complement(1730842..1731753) Bordetella avium 197N 6267667 YP_786171.1 CDS acrA NC_010645.1 1731957 1733147 D acriflavine resistance protein A 1731957..1733147 Bordetella avium 197N 6265547 YP_786172.1 CDS acrB NC_010645.1 1733160 1736327 D acriflavine resistance protein B 1733160..1736327 Bordetella avium 197N 6266591 YP_786173.1 CDS BAV1655 NC_010645.1 1736327 1737790 D multidrug efflux system outer membrane protein 1736327..1737790 Bordetella avium 197N 6266592 YP_786174.1 CDS BAV1656 NC_010645.1 1737980 1738681 D adhesin/virulence factor 1737980..1738681 Bordetella avium 197N 6265548 YP_786175.1 CDS BAV1657 NC_010645.1 1738686 1738997 R membrane protein complement(1738686..1738997) Bordetella avium 197N 6265549 YP_786176.1 CDS BAV1658 NC_010645.1 1739034 1739636 R electron transport protein complement(1739034..1739636) Bordetella avium 197N 6265550 YP_786177.1 CDS opdA NC_010645.1 1739971 1742025 R oligopeptidase A complement(1739971..1742025) Bordetella avium 197N 6265551 YP_786178.1 CDS folD NC_010645.1 1742164 1743018 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1742164..1743018) Bordetella avium 197N 6267462 YP_786179.1 CDS BAV1661 NC_010645.1 1743015 1743641 R two-component response regulator complement(1743015..1743641) Bordetella avium 197N 6267026 YP_786180.1 CDS BAV1662 NC_010645.1 1743638 1745392 R two-component sensor kinase complement(1743638..1745392) Bordetella avium 197N 6265552 YP_786181.1 CDS aceE NC_010645.1 1745914 1748619 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 1745914..1748619 Bordetella avium 197N 6265553 YP_786182.1 CDS aceF NC_010645.1 1748637 1750247 D dihydrolipoamide acetyltransferase 1748637..1750247 Bordetella avium 197N 6266580 YP_786183.1 CDS lpd NC_010645.1 1750263 1752035 D dihydrolipoamide dehydrogenase 1750263..1752035 Bordetella avium 197N 6266581 YP_786184.1 CDS BAV1666 NC_010645.1 1752193 1753557 D hypothetical protein 1752193..1753557 Bordetella avium 197N 6267306 YP_786185.1 CDS BAV1667 NC_010645.1 <1753590 1753787 D hypothetical protein <1753590..1753787 Bordetella avium 197N 6265554 YP_786186.1 CDS fliC NC_010645.1 1753980 1755113 R flagellin complement(1753980..1755113) Bordetella avium 197N 6265555 YP_786187.1 CDS flaD NC_010645.1 1755295 1756029 R RNA polymerase sigma factor for flagellar operon complement(1755295..1756029) Bordetella avium 197N 6267014 YP_786188.1 CDS flbB NC_010645.1 1756437 1756760 D with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 1756437..1756760 Bordetella avium 197N 6266985 YP_786189.1 CDS flaI NC_010645.1 1756789 1757361 D With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 1756789..1757361 Bordetella avium 197N 6267007 YP_786190.1 CDS motA NC_010645.1 1757514 1758389 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 1757514..1758389 Bordetella avium 197N 6266988 YP_786191.1 CDS motB NC_010645.1 1758408 1759382 D with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 1758408..1759382 Bordetella avium 197N 6267377 YP_786192.1 CDS cheY NC_010645.1 1759357 1759737 D chemotaxis two-component response regulator 1759357..1759737 Bordetella avium 197N 6267378 YP_786193.1 CDS cheA NC_010645.1 1759770 1761788 D chemotaxis two-cpmponent sensor kinase 1759770..1761788 Bordetella avium 197N 6266781 YP_786194.1 CDS cheW NC_010645.1 1761802 1762305 D chemotaxis protein 1761802..1762305 Bordetella avium 197N 6266772 YP_786195.1 CDS BAV1677 NC_010645.1 1762363 1764048 D methyl-accepting chemotaxis protein 1762363..1764048 Bordetella avium 197N 6266780 YP_786196.1 CDS cheR NC_010645.1 <1764056 1764901 D chemotaxis protein methyltransferase <1764056..1764901 Bordetella avium 197N 6265556 YP_786197.1 CDS cheB NC_010645.1 1764918 1765973 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1764918..1765973 Bordetella avium 197N 6266778 YP_786198.1 CDS cheY NC_010645.1 1766018 1766407 D chemotaxis response regulator 1766018..1766407 Bordetella avium 197N 6266774 YP_786199.1 CDS cheZ NC_010645.1 1766416 1767042 D cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 1766416..1767042 Bordetella avium 197N 6266782 YP_786200.1 CDS flhB NC_010645.1 1767200 1768342 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1767200..1768342 Bordetella avium 197N 6266783 YP_786201.1 CDS flhA NC_010645.1 1768346 1770463 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1768346..1770463 Bordetella avium 197N 6267012 YP_786202.1 CDS flhF NC_010645.1 <1770460 1772916 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF <1770460..1772916 Bordetella avium 197N 6267011 YP_786203.1 CDS flgN NC_010645.1 1772960 >1773430 R flagella biosynthesis protein complement(1772960..>1773430) Bordetella avium 197N 6267013 YP_786204.1 CDS flgM NC_010645.1 1773427 1773714 R negative regulator of flagellin synthesis complement(1773427..1773714) Bordetella avium 197N 6267010 YP_786205.1 CDS flgA NC_010645.1 1773841 1774590 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1773841..1774590) Bordetella avium 197N 6267009 YP_786206.1 CDS flgB NC_010645.1 1774709 1775116 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1774709..1775116 Bordetella avium 197N 6267008 YP_786207.1 CDS flgC NC_010645.1 1775137 1775556 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1775137..1775556 Bordetella avium 197N 6267006 YP_786208.1 CDS flgD NC_010645.1 1775568 1776260 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 1775568..1776260 Bordetella avium 197N 6267002 YP_786209.1 CDS flaK NC_010645.1 1776341 1777561 D flagellar hook protein 1776341..1777561 Bordetella avium 197N 6267001 YP_786210.1 CDS flgF NC_010645.1 1777578 1778345 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1777578..1778345 Bordetella avium 197N 6266989 YP_786211.1 CDS flgG NC_010645.1 1778392 1779177 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1778392..1779177 Bordetella avium 197N 6267003 YP_786212.1 CDS flgH NC_010645.1 <1779174 1779863 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein <1779174..1779863 Bordetella avium 197N 6266990 YP_786213.1 CDS flgI NC_010645.1 1779868 1780998 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1779868..1780998 Bordetella avium 197N 6267004 YP_786214.1 CDS flgJ NC_010645.1 1780998 1781990 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1780998..1781990 Bordetella avium 197N 6266991 YP_786215.1 CDS flgK NC_010645.1 1782066 1783718 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1782066..1783718 Bordetella avium 197N 6267005 YP_786216.1 CDS flaT NC_010645.1 1783735 1784967 D flagellar hook-associated protein 3 1783735..1784967 Bordetella avium 197N 6266998 YP_786217.1 CDS BAV1699 NC_010645.1 1785048 1786871 D methyl-accepting chemotaxis protein 1785048..1786871 Bordetella avium 197N 6266999 YP_786218.1 CDS BAV1700 NC_010645.1 1786976 1788718 D methyl-accepting chemotaxis protein 1786976..1788718 Bordetella avium 197N 6265557 YP_786219.1 CDS BAV1701 NC_010645.1 1788750 1789214 D No similarity to any protein in the database except for Bordetella bronchiseptica lipoprotein; lipoprotein 1788750..1789214 Bordetella avium 197N 6265558 YP_786220.1 CDS BAV1702 NC_010645.1 1789326 1791059 D methyl-accepting chemotaxis protein 1789326..1791059 Bordetella avium 197N 6265559 YP_786221.1 CDS BAV1703 NC_010645.1 <1791164 1792789 D methyl-accepting chemotaxis protein <1791164..1792789 Bordetella avium 197N 6265560 YP_786222.1 CDS flaP NC_010645.1 1792916 >1793710 R flagellar biosynthetic protein complement(1792916..>1793710) Bordetella avium 197N 6265561 YP_786223.1 CDS flaQ NC_010645.1 1793716 1793985 R flagellar biosynthetic protein FliQ complement(1793716..1793985) Bordetella avium 197N 6266995 YP_786224.1 CDS fliP NC_010645.1 1794003 1794770 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(1794003..1794770) Bordetella avium 197N 6266996 YP_786225.1 CDS flaP NC_010645.1 1794780 1795094 R flagellar protein complement(1794780..1795094) Bordetella avium 197N 6266997 YP_786226.1 CDS flaN NC_010645.1 1795101 1795619 R flagellar motor switch protein complement(1795101..1795619) Bordetella avium 197N 6266994 YP_786227.1 CDS CheC2 NC_010645.1 1795612 1796616 R flagellar motor switch protein complement(1795612..1796616) Bordetella avium 197N 6266992 YP_786228.1 CDS cheC1 NC_010645.1 1796619 1797245 R flagellar protein complement(1796619..1797245) Bordetella avium 197N 6266776 YP_786229.1 CDS flaE NC_010645.1 1797385 1798716 R flagellar hook-length control protein complement(1797385..1798716) Bordetella avium 197N 6266775 YP_786230.1 CDS flaO NC_010645.1 1798733 >1799179 R flagellar protein complement(1798733..>1799179) Bordetella avium 197N 6266986 YP_786231.1 CDS flaC NC_010645.1 1799172 >1800611 R flagellum-specific ATP synthase complement(1799172..>1800611) Bordetella avium 197N 6266993 YP_786232.1 CDS fliH NC_010645.1 1800608 1801342 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(1800608..1801342) Bordetella avium 197N 6266984 YP_786233.1 CDS fliG NC_010645.1 1801335 1802348 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(1801335..1802348) Bordetella avium 197N 6267018 YP_786234.1 CDS fliF NC_010645.1 1802338 1803972 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(1802338..1803972) Bordetella avium 197N 6267017 YP_786235.1 CDS fliE NC_010645.1 1804236 1804574 D flagellar hook-basal body complex protein 1804236..1804574 Bordetella avium 197N 6267016 YP_786236.1 CDS BAV1718 NC_010645.1 1804582 1804983 R hypothetical protein complement(1804582..1804983) Bordetella avium 197N 6267015 YP_786237.1 CDS BAV1719 NC_010645.1 1804991 1805284 R flagellar biosynthesis protein complement(1804991..1805284) Bordetella avium 197N 6265562 YP_786238.1 CDS BAV1720 NC_010645.1 1805293 1806582 R hypothetical protein complement(1805293..1806582) Bordetella avium 197N 6265563 YP_786239.1 CDS fliT NC_010645.1 1806586 1806933 R flagellar protein complement(1806586..1806933) Bordetella avium 197N 6265564 YP_786240.1 CDS fliS NC_010645.1 1806975 1807403 R flagellar protein complement(1806975..1807403) Bordetella avium 197N 6267020 YP_786241.1 CDS flaV NC_010645.1 1807417 1808796 R flagellar hook-associated protein 2 complement(1807417..1808796) Bordetella avium 197N 6267019 YP_786242.1 CDS flaG NC_010645.1 1808930 1809310 R flagellar protein complement(1808930..1809310) Bordetella avium 197N 6267000 YP_786243.1 CDS dedC NC_010645.1 1809552 1810856 D bifunctional folylpolyglutamate synthase/dihydrofolate synthase FolC 1809552..1810856 Bordetella avium 197N 6266987 YP_786244.1 CDS dedD NC_010645.1 1810964 1811782 D membrane protein 1810964..1811782 Bordetella avium 197N 6266873 YP_786245.1 CDS cvpA NC_010645.1 <1811779 1812267 D colicin V production protein <1811779..1812267 Bordetella avium 197N 6266874 YP_786246.1 CDS purF NC_010645.1 1812310 1813830 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1812310..1813830 Bordetella avium 197N 6266826 YP_786247.1 CDS BAV1729 NC_010645.1 1813877 1815274 R hypothetical protein complement(1813877..1815274) Bordetella avium 197N 6267598 YP_786248.1 CDS BAV1730 NC_010645.1 1815366 1816268 D LysR family transcriptional regulator 1815366..1816268 Bordetella avium 197N 6265565 YP_786249.1 CDS dsbB NC_010645.1 1816428 1816913 R disulfide bond formation protein B complement(1816428..1816913) Bordetella avium 197N 6265566 YP_786250.1 CDS glnD NC_010645.1 1817084 1819660 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(1817084..1819660) Bordetella avium 197N 6266904 YP_786251.1 CDS map NC_010645.1 1819685 1820506 R methionine aminopeptidase complement(1819685..1820506) Bordetella avium 197N 6267081 YP_786252.1 CDS rpsB NC_010645.1 1821296 1822045 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1821296..1822045 Bordetella avium 197N 6267328 YP_786253.1 CDS tsf NC_010645.1 1822197 1823075 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1822197..1823075 Bordetella avium 197N 6267711 YP_786254.1 CDS pyrH NC_010645.1 1823270 1823932 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1823270..1823932 Bordetella avium 197N 6267902 YP_786255.1 CDS frr NC_010645.1 1823945 1824505 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1823945..1824505 Bordetella avium 197N 6267615 YP_786256.1 CDS rth NC_010645.1 1824708 1825460 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1824708..1825460 Bordetella avium 197N 6267032 YP_786257.1 CDS cdsA NC_010645.1 1825492 1826337 D phosphatidate cytidylyltransferase 1825492..1826337 Bordetella avium 197N 6267734 YP_786258.1 CDS dxr NC_010645.1 1826334 1827533 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1826334..1827533 Bordetella avium 197N 6266768 YP_786259.1 CDS ecfE NC_010645.1 1827609 1828943 D inner membrane protease 1827609..1828943 Bordetella avium 197N 6266910 YP_786260.1 CDS BAV1742 NC_010645.1 1828996 1831374 D surface antigen 1828996..1831374 Bordetella avium 197N 6266913 YP_786261.1 CDS ompH NC_010645.1 1831559 1832107 D outer membrane protein 1831559..1832107 Bordetella avium 197N 6265567 YP_786262.1 CDS lpxD NC_010645.1 1832114 1833199 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1832114..1833199 Bordetella avium 197N 6267460 YP_786263.1 CDS fabZ NC_010645.1 1833280 1833735 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1833280..1833735 Bordetella avium 197N 6266980 YP_786264.1 CDS lpxA NC_010645.1 1833736 1834530 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1833736..1834530 Bordetella avium 197N 6266949 YP_786265.1 CDS lpxB NC_010645.1 1834527 1835714 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1834527..1835714 Bordetella avium 197N 6267311 YP_786266.1 CDS rnhB NC_010645.1 1835701 1836309 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1835701..1836309 Bordetella avium 197N 6267312 YP_786267.1 CDS BAV1749 NC_010645.1 1836306 1837079 D RNA methyltransferase 1836306..1837079 Bordetella avium 197N 6267669 YP_786268.1 CDS BAV1749A NC_010645.1 1837079 1837525 D hypothetical protein 1837079..1837525 Bordetella avium 197N 6265568 YP_786269.1 CDS BAV1750 NC_010645.1 1837533 1838357 R hypothetical protein complement(1837533..1838357) Bordetella avium 197N 6265569 YP_786270.1 CDS ppsA NC_010645.1 1838516 1840882 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1838516..1840882 Bordetella avium 197N 6265570 YP_786271.1 CDS BAV1752 NC_010645.1 1841129 1841560 D membrane protein 1841129..1841560 Bordetella avium 197N 6267564 YP_786272.1 CDS BAV1753 NC_010645.1 1841594 1842520 D membrane protein 1841594..1842520 Bordetella avium 197N 6265571 YP_786273.1 CDS BAV1754 NC_010645.1 1842554 1843699 D signaling protein 1842554..1843699 Bordetella avium 197N 6265572 YP_786274.1 CDS smpB NC_010645.1 1843725 1844186 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1843725..1844186) Bordetella avium 197N 6265573 YP_786275.1 CDS BAV1756 NC_010645.1 1844252 1844686 D cyclase 1844252..1844686 Bordetella avium 197N 6267761 YP_786276.1 CDS BAV1757 NC_010645.1 1844676 1845008 D hypothetical protein 1844676..1845008 Bordetella avium 197N 6265574 YP_786277.1 CDS BAV1758 NC_010645.1 <1845201 1846355 D acyl-CoA dehydrogenase <1845201..1846355 Bordetella avium 197N 6265575 YP_786278.1 CDS BAV1759 NC_010645.1 1846352 1847524 D enoly-CoA hydratase 1846352..1847524 Bordetella avium 197N 6265576 YP_786279.1 CDS mmsB NC_010645.1 1847582 1848466 D Also similar to BAV2903 (35.2 38d); 3-hydroxyisobutyrate dehydrogenase 1847582..1848466 Bordetella avium 197N 6265577 YP_786280.1 CDS BAV1761 NC_010645.1 1848535 1849224 D membrane protein 1848535..1849224 Bordetella avium 197N 6267363 YP_786281.1 CDS BAV1762 NC_010645.1 1849237 1850196 R aminomethyl transferase complement(1849237..1850196) Bordetella avium 197N 6265578 YP_786282.1 CDS BAV1763 NC_010645.1 1850325 1851344 D hypothetical protein 1850325..1851344 Bordetella avium 197N 6265579 YP_786283.1 CDS tmk NC_010645.1 1851341 1851985 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1851341..1851985 Bordetella avium 197N 6265580 YP_786284.1 CDS holB NC_010645.1 1851982 1853025 D DNA polymerase III subunit delta' 1851982..1853025 Bordetella avium 197N 6267814 YP_786285.1 CDS BAV1766 NC_010645.1 1853052 1853822 D deoxyribonuclease 1853052..1853822 Bordetella avium 197N 6267190 YP_786286.1 CDS BAV1767 NC_010645.1 1853864 1854664 D hypothetical protein 1853864..1854664 Bordetella avium 197N 6265581 YP_786287.1 CDS BAV1769 NC_010645.1 1854985 1855410 R No similarity outside the bordetellae; hypothetical protein complement(1854985..1855410) Bordetella avium 197N 6265582 YP_786288.1 CDS rcsB NC_010645.1 1857012 1857707 D two-component response regulator of capsular synthesis 1857012..1857707 Bordetella avium 197N 6265583 YP_786289.1 CDS fabF NC_010645.1 1858090 1859301 R 3-oxoacyl-[acyl-carrier-protein] synthase complement(1858090..1859301) Bordetella avium 197N 6267624 YP_786290.1 CDS BAV1772 NC_010645.1 1859318 1859755 R hypothetical protein complement(1859318..1859755) Bordetella avium 197N 6266945 YP_786291.1 CDS BAV1773 NC_010645.1 1859858 1861048 R adhesin complement(1859858..1861048) Bordetella avium 197N 6265584 YP_786292.1 CDS lpfC NC_010645.1 1861045 >1863567 R fimbrial usher complement(1861045..>1863567) Bordetella avium 197N 6265585 YP_786293.1 CDS lpfB NC_010645.1 1863564 1864343 R fimbrial chaperone complement(1863564..1864343) Bordetella avium 197N 6267308 YP_786294.1 CDS BAV1776 NC_010645.1 1864365 1864901 R One of 11 fimbrial subunits; fimbrial subunit complement(1864365..1864901) Bordetella avium 197N 6267307 YP_786295.1 CDS BAV1777 NC_010645.1 1865029 1865559 R One of 11 fimbrial subunits; fimbrial subunit complement(1865029..1865559) Bordetella avium 197N 6265586 YP_786296.1 CDS BAV1778 NC_010645.1 1865598 1866005 R hypothetical protein complement(1865598..1866005) Bordetella avium 197N 6265587 YP_786297.1 CDS BAV1779 NC_010645.1 1866281 >1867618 R amino acid permease complement(1866281..>1867618) Bordetella avium 197N 6265588 YP_786298.1 CDS rcsC NC_010645.1 1867719 1871147 R two component sensor kinase for capsular biosynthesis complement(1867719..1871147) Bordetella avium 197N 6265589 YP_786299.1 CDS BAV1781 NC_010645.1 1871480 1872400 R LysR family transcriptional regulator complement(1871480..1872400) Bordetella avium 197N 6267625 YP_786300.1 CDS nagI NC_010645.1 1872542 1873591 D gentisate 1,2-dioxygenase 1872542..1873591 Bordetella avium 197N 6265590 YP_786301.1 CDS nagK NC_010645.1 1873647 1874348 D fumarylpyruvate hydrolase 1873647..1874348 Bordetella avium 197N 6267413 YP_786302.1 CDS nagL NC_010645.1 1874345 1874986 D maleylpyruvate isomerase 1874345..1874986 Bordetella avium 197N 6267414 YP_786303.1 CDS BAV1785 NC_010645.1 1875002 1875127 D hypothetical protein 1875002..1875127 Bordetella avium 197N 6267415 YP_786304.1 CDS nagM NC_010645.1 1875120 1876100 D hypothetical protein 1875120..1876100 Bordetella avium 197N 6265591 YP_786305.1 CDS BAV1787 NC_010645.1 1876200 1877414 D catalyzes the formation of catechol from salicylate; salicylate hydroxylase 1876200..1877414 Bordetella avium 197N 6267416 YP_786306.1 CDS BAV1788 NC_010645.1 1877470 1877877 D membrane protein 1877470..1877877 Bordetella avium 197N 6265592 YP_786307.1 CDS BAV1789 NC_010645.1 1878085 1880160 R Its C-terminal region is similar to the C-terminal region of Pseudomonas putida regulator MorA.; signaling protein complement(1878085..1880160) Bordetella avium 197N 6265593 YP_786308.1 CDS BAV1790 NC_010645.1 1880268 1881332 R cointegrate resolution protein complement(1880268..1881332) Bordetella avium 197N 6265594 YP_786309.1 CDS BAV1791 NC_010645.1 1881450 1882562 D integrase 1881450..1882562 Bordetella avium 197N 6265595 YP_786310.1 CDS ppiC NC_010645.1 1882640 1882921 D peptidyl-prolyl cis-trans isomerase 1882640..1882921 Bordetella avium 197N 6265596 YP_786311.1 CDS BAV1793 NC_010645.1 1883033 1883452 R acetyltransferase complement(1883033..1883452) Bordetella avium 197N 6267561 YP_786312.1 CDS BAV1794 NC_010645.1 1883449 >1883709 R membrane protein complement(1883449..>1883709) Bordetella avium 197N 6265597 YP_786313.1 CDS BAV1795 NC_010645.1 1883725 1884024 R hypothetical protein complement(1883725..1884024) Bordetella avium 197N 6265598 YP_786314.1 CDS slyX NC_010645.1 1884083 1884301 D protein SlyX 1884083..1884301 Bordetella avium 197N 6265599 YP_786315.1 CDS BAV1797 NC_010645.1 1884316 1885098 D hydrolase 1884316..1885098 Bordetella avium 197N 6267759 YP_786316.1 CDS BAV1798 NC_010645.1 <1885246 1885386 D Partial CDS. Similar to the N-terminus of Bordetella parapertussis hypothetical protein, Rhizobium meliloti hypothetical protein, and to Ruegeria sp. PR1b rc119; hypothetical protein <1885246..1885386 Bordetella avium 197N 6265600 YP_786317.1 CDS BAV1799 NC_010645.1 1885580 1886446 D GntR family transcriptional regulator 1885580..1886446 Bordetella avium 197N 6265601 YP_786318.1 CDS BAV1800 NC_010645.1 1886573 1887310 D glutamine amidotransferase 1886573..1887310 Bordetella avium 197N 6265602 YP_786319.1 CDS BAV1801 NC_010645.1 1887316 1888176 R LysR family transcriptional regulator complement(1887316..1888176) Bordetella avium 197N 6265603 YP_786320.1 CDS BAV1802 NC_010645.1 1888329 1889702 D transporter 1888329..1889702 Bordetella avium 197N 6265604 YP_786321.1 CDS plcN2 NC_010645.1 1889792 >1891963 R ; Also similar to BAV1084 (49.7 38d.).; non-hemolytic phospholipase C complement(1889792..>1891963) Bordetella avium 197N 6265605 YP_786322.1 CDS BAV1804 NC_010645.1 1892197 1894176 R lipoprotein complement(1892197..1894176) Bordetella avium 197N 6267543 YP_786323.1 CDS adhB NC_010645.1 1894546 1895901 D alcohol dehydrogenase cytochrome c subunit 1894546..1895901 Bordetella avium 197N 6265606 YP_786324.1 CDS BAV1806 NC_010645.1 1895894 1896802 D cytochrome c family protein 1895894..1896802 Bordetella avium 197N 6266601 YP_786325.1 CDS BAV1807 NC_010645.1 <1896806 1896973 D hypothetical protein <1896806..1896973 Bordetella avium 197N 6265607 YP_786326.1 CDS mgtC NC_010645.1 1897160 1897873 D Mg(2+) transport ATPase protein c 1897160..1897873 Bordetella avium 197N 6265608 YP_786327.1 CDS BAV1809 NC_010645.1 1897922 1898365 D dehydratase 1897922..1898365 Bordetella avium 197N 6267350 YP_786328.1 CDS BAV1810 NC_010645.1 1898373 1899986 R hypothetical protein complement(1898373..1899986) Bordetella avium 197N 6265609 YP_786329.1 CDS BAV1810A NC_010645.1 1900026 1900148 R No similarity outside the bordetellae; hypothetical protein complement(1900026..1900148) Bordetella avium 197N 6265610 YP_786330.1 CDS BAV1811 NC_010645.1 1900205 1900489 R No similarity outside the bordetellae; hypothetical protein complement(1900205..1900489) Bordetella avium 197N 6265611 YP_786331.1 CDS BAV1812 NC_010645.1 1900876 1902294 D outer membrane efflux protein 1900876..1902294 Bordetella avium 197N 6265612 YP_786332.1 CDS BAV1813 NC_010645.1 1902291 1903355 D HlyD family secretion protein 1902291..1903355 Bordetella avium 197N 6265613 YP_786333.1 CDS BAV1814 NC_010645.1 1903355 1906075 D ABC transporter ATP-binding protein 1903355..1906075 Bordetella avium 197N 6265614 YP_786334.1 CDS BAV1815 NC_010645.1 1906079 1907206 D ABC transporter permease 1906079..1907206 Bordetella avium 197N 6265615 YP_786335.1 CDS BAV1816 NC_010645.1 1907244 1907693 D hypothetical protein 1907244..1907693 Bordetella avium 197N 6265616 YP_786336.1 CDS BAV1817 NC_010645.1 1907930 1908337 D membrane protein 1907930..1908337 Bordetella avium 197N 6265617 YP_786337.1 CDS BAV1818 NC_010645.1 1908408 1909073 R hypothetical protein complement(1908408..1909073) Bordetella avium 197N 6265618 YP_786338.1 CDS BAV1819 NC_010645.1 1909239 1909730 D hypothetical protein 1909239..1909730 Bordetella avium 197N 6265619 YP_786339.1 CDS BAV1820 NC_010645.1 <1910391 1910651 D hypothetical protein <1910391..1910651 Bordetella avium 197N 6265620 YP_786340.1 CDS BAV1821 NC_010645.1 1910754 1912133 D flavin-containing monooxygenase 1910754..1912133 Bordetella avium 197N 6265621 YP_786341.1 CDS BAV1822 NC_010645.1 1912231 1913658 R amidase complement(1912231..1913658) Bordetella avium 197N 6265622 YP_786342.1 CDS kgtP NC_010645.1 1913758 1915062 R alpha-ketoglutarate permease complement(1913758..1915062) Bordetella avium 197N 6265623 YP_786343.1 CDS BAV1824 NC_010645.1 1915143 1916132 D transcriptional regulator 1915143..1916132 Bordetella avium 197N 6267274 YP_786344.1 CDS BAV1825 NC_010645.1 1916158 1917297 R hypothetical protein complement(1916158..1917297) Bordetella avium 197N 6265624 YP_786345.1 CDS BAV1826 NC_010645.1 1917518 1918585 D No significant similarity outside the bordetellae; membrane protein 1917518..1918585 Bordetella avium 197N 6265625 YP_786346.1 CDS BAV1827 NC_010645.1 1918608 1919039 R hypothetical protein complement(1918608..1919039) Bordetella avium 197N 6265626 YP_786347.1 CDS arsC NC_010645.1 1919125 1919481 R arsenate reductase complement(1919125..1919481) Bordetella avium 197N 6265627 YP_786348.1 CDS BAV1829 NC_010645.1 1919519 1920970 R CoA-transferase complement(1919519..1920970) Bordetella avium 197N 6266663 YP_786349.1 CDS phrB NC_010645.1 1921150 1922607 D deoxyribodipyrimidine photo-lyase 1921150..1922607 Bordetella avium 197N 6265628 YP_786350.1 CDS BAV1831 NC_010645.1 1922604 1922927 R hypothetical protein complement(1922604..1922927) Bordetella avium 197N 6267536 YP_786351.1 CDS BAV1832 NC_010645.1 1923058 1923552 D glutathione peroxidase 1923058..1923552 Bordetella avium 197N 6265629 YP_786352.1 CDS BAV1833 NC_010645.1 1923653 1923928 D hypothetical protein 1923653..1923928 Bordetella avium 197N 6265630 YP_786353.1 CDS BAV1834 NC_010645.1 1923925 1924701 D lipoate-protein ligase A 1923925..1924701 Bordetella avium 197N 6265631 YP_786354.1 CDS BAV1835 NC_010645.1 1924741 1925556 D lipoprotein 1924741..1925556 Bordetella avium 197N 6265632 YP_786355.1 CDS gdhA NC_010645.1 1925730 1927019 R glutamate dehydrogenase complement(1925730..1927019) Bordetella avium 197N 6265633 YP_786356.1 CDS BAV1837 NC_010645.1 1927444 1928850 R GntR family transcriptional regulator complement(1927444..1928850) Bordetella avium 197N 6267063 YP_786357.1 CDS BAV1838 NC_010645.1 1929395 1929625 D hypothetical protein 1929395..1929625 Bordetella avium 197N 6265634 YP_786358.1 CDS BAV1839 NC_010645.1 1929697 1930986 D transporter 1929697..1930986 Bordetella avium 197N 6265635 YP_786359.1 CDS BAV1840 NC_010645.1 1930997 1932124 R membrane protein complement(1930997..1932124) Bordetella avium 197N 6265636 YP_786360.1 CDS cysA NC_010645.1 1932152 1933075 R thiosulfate sulfurtransferase complement(1932152..1933075) Bordetella avium 197N 6265637 YP_786361.1 CDS BAV1842 NC_010645.1 1933343 1933834 D RNA polymerase sigma factor 1933343..1933834 Bordetella avium 197N 6266839 YP_786362.1 CDS ssuE NC_010645.1 1934166 >1934783 R FMN reductase complement(1934166..>1934783) Bordetella avium 197N 6265638 YP_786363.1 CDS BAV1844 NC_010645.1 1934852 >1935973 R monooxygenase complement(1934852..>1935973) Bordetella avium 197N 6267776 YP_786364.1 CDS BAV1845 NC_010645.1 1935970 1937280 R monooxygenase complement(1935970..1937280) Bordetella avium 197N 6265639 YP_786365.1 CDS BAV1846 NC_010645.1 1937286 1938275 R monooxygenase complement(1937286..1938275) Bordetella avium 197N 6265640 YP_786366.1 CDS BAV1847 NC_010645.1 1938289 1939905 R ABC transporter ATP-binding protein complement(1938289..1939905) Bordetella avium 197N 6265641 YP_786367.1 CDS BAV1848 NC_010645.1 1939902 1940729 R ABC transporter permease complement(1939902..1940729) Bordetella avium 197N 6265642 YP_786368.1 CDS BAV1849 NC_010645.1 1940726 1941697 R ABC transporter permease complement(1940726..1941697) Bordetella avium 197N 6265643 YP_786369.1 CDS BAV1850 NC_010645.1 1941707 1943287 R ABC transporter periplasmic binding protein complement(1941707..1943287) Bordetella avium 197N 6265644 YP_786370.1 CDS BAV1851 NC_010645.1 1943519 1944022 D PadR family transcriptional regulator 1943519..1944022 Bordetella avium 197N 6265645 YP_786371.1 CDS BAV1852 NC_010645.1 1944037 1944342 D hypothetical protein 1944037..1944342 Bordetella avium 197N 6265646 YP_786372.1 CDS bfeB NC_010645.1 1944367 1945221 R ferric-enterobactin hydrolase complement(1944367..1945221) Bordetella avium 197N 6265647 YP_786373.1 CDS bfeA NC_010645.1 1945221 1947428 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(1945221..1947428) Bordetella avium 197N 6266703 YP_786374.1 CDS bfeR NC_010645.1 <1947547 1948470 D enterobactin-dependent positive regulator <1947547..1948470 Bordetella avium 197N 6266702 YP_786375.1 CDS BAV1857 NC_010645.1 1949522 1949746 R No similarity outside the bordetellae; integrase complement(1949522..1949746) Bordetella avium 197N 6265648 YP_786376.1 CDS BAV1858 NC_010645.1 1949730 >1949858 R hypothetical protein complement(1949730..>1949858) Bordetella avium 197N 6265649 YP_786377.1 CDS BAV1859 NC_010645.1 1950062 1950946 D No similarity outside the bordetellae; hypothetical protein 1950062..1950946 Bordetella avium 197N 6265650 YP_786378.1 CDS icd NC_010645.1 1951249 1953477 D isocitrate dehydrogenase (NADP) 1951249..1953477 Bordetella avium 197N 6265651 YP_786379.1 CDS BAV1861 NC_010645.1 1953748 1954206 D membrane protein 1953748..1954206 Bordetella avium 197N 6267229 YP_786380.1 CDS BAV1862 NC_010645.1 1954214 1955731 D membrane protein 1954214..1955731 Bordetella avium 197N 6265652 YP_786381.1 CDS BAV1863 NC_010645.1 1956292 1956471 D hypothetical protein 1956292..1956471 Bordetella avium 197N 6265653 YP_786382.1 CDS BAV1864 NC_010645.1 <1956540 1958615 D ; Similar to the C-terminal regions of several autotransporters; autotransporter <1956540..1958615 Bordetella avium 197N 6265654 YP_786383.1 CDS BAV1865 NC_010645.1 1958896 1959648 R ABC transporter ATP-binding protein complement(1958896..1959648) Bordetella avium 197N 6265655 YP_786384.1 CDS BAV1866 NC_010645.1 1959656 1960309 R ABC transporter permease complement(1959656..1960309) Bordetella avium 197N 6265656 YP_786385.1 CDS BAV1867 NC_010645.1 1960334 1961092 R ABC transporter solute-binding protein complement(1960334..1961092) Bordetella avium 197N 6265657 YP_786386.1 CDS BAV1868 NC_010645.1 1961574 1961909 D Similar to exported proteins within the bordetellae only; hypothetical protein 1961574..1961909 Bordetella avium 197N 6265658 YP_786387.1 CDS BAV1869 NC_010645.1 1962173 >1963732 R signaling protein complement(1962173..>1963732) Bordetella avium 197N 6265659 YP_786388.1 CDS BAV1870 NC_010645.1 1963793 >1964581 R ; No significant similarity outside the bordetellae; membrane protein complement(1963793..>1964581) Bordetella avium 197N 6265660 YP_786389.1 CDS BAV1871 NC_010645.1 1964731 1965510 D hydratase 1964731..1965510 Bordetella avium 197N 6265661 YP_786390.1 CDS BAV1872 NC_010645.1 1965515 1967044 R membrane protein complement(1965515..1967044) Bordetella avium 197N 6265662 YP_786391.1 CDS BAV1873 NC_010645.1 <1967185 1967520 D hypothetical protein <1967185..1967520 Bordetella avium 197N 6265663 YP_786392.1 CDS BAV1874 NC_010645.1 1967811 1969010 D response regulator 1967811..1969010 Bordetella avium 197N 6265664 YP_786393.1 CDS bvgA NC_010645.1 1969437 1970060 D virulence factors transcription regulator 1969437..1970060 Bordetella avium 197N 6265665 YP_786394.1 CDS bvgS NC_010645.1 <1970064 1973724 D virulence sensor protein join(<1970064..1973378,1973380..1973724) Bordetella avium 197N 6266746 YP_786395.1 CDS BAV1878 NC_010645.1 1973791 1975815 D membrane protein 1973791..1975815 Bordetella avium 197N 6265666 YP_786396.1 CDS BAV1879 NC_010645.1 1976069 1976794 D GntR family transcriptional regulator 1976069..1976794 Bordetella avium 197N 6265667 YP_786397.1 CDS ilvG NC_010645.1 1976950 1978653 D also similar to BAV0902 (52.585 38d.); thiamine pyrophosphate protein 1976950..1978653 Bordetella avium 197N 6265668 YP_786398.1 CDS BAV1881 NC_010645.1 1978807 1979292 D ; No similarity outside of the bordetellae; hypothetical protein 1978807..1979292 Bordetella avium 197N 6267240 YP_786399.1 CDS psd NC_010645.1 1979369 1980253 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 1979369..1980253 Bordetella avium 197N 6265669 YP_786400.1 CDS lctD NC_010645.1 1980437 1981615 D L-lactate dehydrogenase 1980437..1981615 Bordetella avium 197N 6267586 YP_786401.1 CDS BAV1884 NC_010645.1 1981593 1982417 R hypothetical protein complement(1981593..1982417) Bordetella avium 197N 6267280 YP_786402.1 CDS BAV1885 NC_010645.1 1982511 1983071 R acetyltransferase complement(1982511..1983071) Bordetella avium 197N 6265670 YP_786403.1 CDS hslR NC_010645.1 1983068 1983478 R ribosome-associated heat shock protein complement(1983068..1983478) Bordetella avium 197N 6265671 YP_786404.1 CDS BAV1887 NC_010645.1 1983533 1983910 D membrane protein 1983533..1983910 Bordetella avium 197N 6267213 YP_786405.1 CDS BAV1888 NC_010645.1 1983916 1984806 D membrane protein 1983916..1984806 Bordetella avium 197N 6265672 YP_786406.1 CDS gst NC_010645.1 1984898 1985512 D glutathione S-transferase 1984898..1985512 Bordetella avium 197N 6265673 YP_786407.1 CDS BAV1890 NC_010645.1 1985767 1986498 D aspartate racemase 1985767..1986498 Bordetella avium 197N 6267134 YP_786408.1 CDS livF NC_010645.1 1986554 1987255 R high-affinity branched-chain amino acid ABC transporter ATP-binding protein complement(1986554..1987255) Bordetella avium 197N 6265674 YP_786409.1 CDS livG NC_010645.1 1987256 1988023 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(1987256..1988023) Bordetella avium 197N 6267297 YP_786410.1 CDS livM NC_010645.1 1988020 1989261 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit complement(1988020..1989261) Bordetella avium 197N 6267298 YP_786411.1 CDS livH NC_010645.1 1989261 1990187 R high-affinity branched-chain amino acid ABC transporter permease complement(1989261..1990187) Bordetella avium 197N 6267302 YP_786412.1 CDS livJ1 NC_010645.1 1990291 1991406 R Also similar to BAV1903 (59.299 38d).; high-affinity branched-chain amino acid ABC transporter leu/ile/val-binding protein complement(1990291..1991406) Bordetella avium 197N 6267299 YP_786413.1 CDS BAV1896 NC_010645.1 1991654 1991980 R membrane protein complement(1991654..1991980) Bordetella avium 197N 6267300 YP_786414.1 CDS BAV1897 NC_010645.1 1991977 >1992531 R membrane protein complement(1991977..>1992531) Bordetella avium 197N 6265675 YP_786415.1 CDS proC NC_010645.1 1992528 1993361 R pyrroline-5-carboxylate reductase complement(1992528..1993361) Bordetella avium 197N 6265676 YP_786416.1 CDS ugpB NC_010645.1 1993556 1994866 D glycerol-3-phosphate-binding periplasmic protein 1993556..1994866 Bordetella avium 197N 6267577 YP_786417.1 CDS ugpA NC_010645.1 1995125 1996006 D sn-glycerol-3-phosphate ABC transporter permease 1995125..1996006 Bordetella avium 197N 6267915 YP_786418.1 CDS ugpE NC_010645.1 1996034 1996885 D sn-glycerol-3-phosphate ABC transporter permease 1996034..1996885 Bordetella avium 197N 6267914 YP_786419.1 CDS ugpC NC_010645.1 1996932 1998017 D part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit 1996932..1998017 Bordetella avium 197N 6267917 YP_786420.1 CDS livJ2 NC_010645.1 1998103 1999224 R Also similar to BAV1895 (59.299 38d).; leu/ile/val-binding protein complement(1998103..1999224) Bordetella avium 197N 6267916 YP_786421.1 CDS BAV1904 NC_010645.1 1999412 2000020 D hypothetical protein 1999412..2000020 Bordetella avium 197N 6267301 YP_786422.1 CDS dps NC_010645.1 2000025 2000525 R ferritin-like DNA-binding protein complement(2000025..2000525) Bordetella avium 197N 6265677 YP_786423.1 CDS BAV1906 NC_010645.1 2000592 2001008 R hypothetical protein complement(2000592..2001008) Bordetella avium 197N 6266901 YP_786424.1 CDS betA NC_010645.1 2001005 2002618 R choline dehydrogenase complement(2001005..2002618) Bordetella avium 197N 6265678 YP_786425.1 CDS betB NC_010645.1 2002615 2004105 R betaine aldehyde dehydrogenase complement(2002615..2004105) Bordetella avium 197N 6266698 YP_786426.1 CDS BAV1909 NC_010645.1 2004119 2005132 R hypothetical protein complement(2004119..2005132) Bordetella avium 197N 6266699 YP_786427.1 CDS BAV1910 NC_010645.1 2005159 2005968 R ABC transporter permease complement(2005159..2005968) Bordetella avium 197N 6265679 YP_786428.1 CDS BAV1911 NC_010645.1 2005965 2006795 R ABC transporter ATP-binding protein complement(2005965..2006795) Bordetella avium 197N 6265680 YP_786429.1 CDS BAV1912 NC_010645.1 2006792 2007394 R glutathione S-transferase complement(2006792..2007394) Bordetella avium 197N 6265681 YP_786430.1 CDS BAV1913 NC_010645.1 2007434 2007811 R translation-inhibition endoribonuclease complement(2007434..2007811) Bordetella avium 197N 6265682 YP_786431.1 CDS BAV1914 NC_010645.1 2007814 2008950 R hypothetical protein complement(2007814..2008950) Bordetella avium 197N 6265683 YP_786432.1 CDS BAV1915 NC_010645.1 2008963 2010084 R dioxygenase complement(2008963..2010084) Bordetella avium 197N 6265684 YP_786433.1 CDS BAV1916 NC_010645.1 2010348 2011019 D transcriptional regulator 2010348..2011019 Bordetella avium 197N 6265685 YP_786434.1 CDS mmsA NC_010645.1 2011022 2012527 R methylmalonate-semialdehyde dehydrogenase complement(2011022..2012527) Bordetella avium 197N 6265686 YP_786435.1 CDS BAV1918 NC_010645.1 2012668 2013621 D LysR family transcriptional regulator 2012668..2013621 Bordetella avium 197N 6267362 YP_786436.1 CDS oxyR NC_010645.1 2013543 2014508 R hydrogen peroxide-inducible genes activator complement(2013543..2014508) Bordetella avium 197N 6265687 YP_786437.1 CDS recG NC_010645.1 2014564 2016618 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(2014564..2016618) Bordetella avium 197N 6267466 YP_786438.1 CDS BAV1921 NC_010645.1 2016630 2017016 R translation-inhibition endoribonuclease complement(2016630..2017016) Bordetella avium 197N 6267628 YP_786439.1 CDS fpr NC_010645.1 2017609 2018385 R ferredoxin--NADP reductase complement(2017609..2018385) Bordetella avium 197N 6265688 YP_786440.1 CDS BAV1923 NC_010645.1 2018715 2019758 D ABC transporter substrate-binding protein 2018715..2019758 Bordetella avium 197N 6267031 YP_786441.1 CDS BAV1924 NC_010645.1 2019864 2021522 D ABC transporter permease 2019864..2021522 Bordetella avium 197N 6265689 YP_786442.1 CDS BAV1925 NC_010645.1 <2021527 2022351 D ABC transporter ATP-binding protein <2021527..2022351 Bordetella avium 197N 6265690 YP_786443.1 CDS BAV1926 NC_010645.1 2022285 2023187 R pirin-like protein complement(2022285..2023187) Bordetella avium 197N 6265691 YP_786444.1 CDS BAV1927 NC_010645.1 2023225 2023923 R pirin-like protein complement(2023225..2023923) Bordetella avium 197N 6265692 YP_786445.1 CDS BAV1928 NC_010645.1 2024070 2025020 D LysR family transcriptional regulator 2024070..2025020 Bordetella avium 197N 6265693 YP_786446.1 CDS glnG NC_010645.1 2025161 2026636 R nitrogen regulation protein NR(I) complement(2025161..2026636) Bordetella avium 197N 6265694 YP_786447.1 CDS glnL NC_010645.1 2026636 2027697 R nitrogen regulation protein NR(II) complement(2026636..2027697) Bordetella avium 197N 6267084 YP_786448.1 CDS glnA NC_010645.1 2027791 2029203 R glutamine synthetase complement(2027791..2029203) Bordetella avium 197N 6267087 YP_786449.1 CDS hemN NC_010645.1 2029385 2030602 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(2029385..2030602) Bordetella avium 197N 6267079 YP_786450.1 CDS BAV1933 NC_010645.1 2030613 2031212 R Ham1 protein-like protein complement(2030613..2031212) Bordetella avium 197N 6267161 YP_786451.1 CDS BAV1934 NC_010645.1 2031369 2033174 D signaling protein 2031369..2033174 Bordetella avium 197N 6265695 YP_786452.1 CDS BAV1935 NC_010645.1 2033094 2034737 R methyl-accepting chemotaxis protein complement(2033094..2034737) Bordetella avium 197N 6265696 YP_786453.1 CDS rph NC_010645.1 2035008 2035742 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(2035008..2035742) Bordetella avium 197N 6265697 YP_786454.1 CDS BAV1937 NC_010645.1 2035869 2036801 D hypothetical protein 2035869..2036801 Bordetella avium 197N 6267672 YP_786455.1 CDS BAV1939 NC_010645.1 2037735 2038922 D dehydratase/racemase 2037735..2038922 Bordetella avium 197N 6265699 YP_786456.1 CDS BAV1940 NC_010645.1 2039207 2039992 R HlyD family secretion protein complement(2039207..2039992) Bordetella avium 197N 6265700 YP_786457.1 CDS secA NC_010645.1 2039998 2041980 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(2039998..2041980) Bordetella avium 197N 6265701 YP_786458.1 CDS BAV1942 NC_010645.1 2041982 2044135 R membrane protein complement(2041982..2044135) Bordetella avium 197N 6267745 YP_786459.1 CDS BAV1943 NC_010645.1 2044145 2045968 R signal transduction protein complement(2044145..2045968) Bordetella avium 197N 6265702 YP_786460.1 CDS BAV1944 NC_010645.1 2045961 >2058989 R ; Weakly and partially similar to a wide range of proteins; secreted calcium-binding protein complement(2045961..>2058989) Bordetella avium 197N 6265703 YP_786461.1 CDS BAV1945 NC_010645.1 2059011 2078393 R adhesin complement(2059011..2078393) Bordetella avium 197N 6265704 YP_786462.1 CDS BAV1946 NC_010645.1 2078481 2080082 R outer membrane protein complement(2078481..2080082) Bordetella avium 197N 6265705 YP_786463.1 CDS BAV1947 NC_010645.1 2080075 2080917 R hypothetical protein complement(2080075..2080917) Bordetella avium 197N 6265706 YP_786464.1 CDS BAV1948 NC_010645.1 2080929 2081705 R SapC-like protein complement(2080929..2081705) Bordetella avium 197N 6265707 YP_786465.1 CDS BAV1949 NC_010645.1 2081941 2083782 R two-component sensor histidine kinase complement(2081941..2083782) Bordetella avium 197N 6265708 YP_786466.1 CDS BAV1950 NC_010645.1 2083779 2084456 R two-component response regulator complement(2083779..2084456) Bordetella avium 197N 6265709 YP_786467.1 CDS BAV1951 NC_010645.1 2084709 2085974 R lipoprotein complement(2084709..2085974) Bordetella avium 197N 6265710 YP_786468.1 CDS amn NC_010645.1 2086043 2087533 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(2086043..2087533) Bordetella avium 197N 6265711 YP_786469.1 CDS BAV1953 NC_010645.1 2087769 2088347 D hypothetical protein 2087769..2088347 Bordetella avium 197N 6266620 YP_786470.1 CDS BAV1954 NC_010645.1 2088401 2089171 R oxidoreductase complement(2088401..2089171) Bordetella avium 197N 6265712 YP_786471.1 CDS gmk NC_010645.1 2089307 2089939 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 2089307..2089939 Bordetella avium 197N 6265713 YP_786472.1 CDS rpoZ NC_010645.1 2089971 2090174 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 2089971..2090174 Bordetella avium 197N 6267105 YP_786473.1 CDS spoT NC_010645.1 2090198 2092468 D guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 2090198..2092468 Bordetella avium 197N 6267709 YP_786474.1 CDS glnQ NC_010645.1 2092513 2093241 R similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein complement(2092513..2093241) Bordetella avium 197N 6267767 YP_786475.1 CDS glnP NC_010645.1 2093238 >2093897 R similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease complement(2093238..>2093897) Bordetella avium 197N 6267089 YP_786476.1 CDS glnH NC_010645.1 2093978 2094724 R similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein complement(2093978..2094724) Bordetella avium 197N 6267088 YP_786477.1 CDS fhaC NC_010645.1 2094955 2096733 R A related gene, hagA (BAVXXX) may function to export the B. avium hemagglutinin, HagB; an additional pair of fhaBC/hagAB genes occurs at BAVXXX; hemolysin activator protein complement(2094955..2096733) Bordetella avium 197N 6267085 YP_786478.1 CDS fhaE NC_010645.1 2096726 2097850 R Fimbrial adhesin complement(2096726..2097850) Bordetella avium 197N 6266975 YP_786479.1 CDS fhaA NC_010645.1 2097847 >2100366 R outer membrane fimbrial usher protein complement(2097847..>2100366) Bordetella avium 197N 6266977 YP_786480.1 CDS fhaD NC_010645.1 2100379 2101173 R Fimbrial chaperone protein complement(2100379..2101173) Bordetella avium 197N 6266973 YP_786481.1 CDS fimA NC_010645.1 2101302 2101898 R One of 11 fimbrial subunits; fimbrial subunit complement(2101302..2101898) Bordetella avium 197N 6266976 YP_786482.1 CDS fhaB NC_010645.1 2102421 2110286 R Filamentous hemagglutinin/adhesin complement(2102421..2110286) Bordetella avium 197N 6266978 YP_786483.1 CDS BAV1967 NC_010645.1 2110737 2111411 R ABC transporter ATP-binding protein complement(2110737..2111411) Bordetella avium 197N 6266974 YP_786484.1 CDS BAV1968 NC_010645.1 2111458 2112066 D esterase 2111458..2112066 Bordetella avium 197N 6265714 YP_786485.1 CDS ppiD NC_010645.1 2112051 2113997 R peptidyl-prolyl cis-trans isomerase complement(2112051..2113997) Bordetella avium 197N 6265715 YP_786486.1 CDS ugpQ NC_010645.1 2114259 2115008 D hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; cytoplasmic glycerophosphodiester phosphodiesterase 2114259..2115008 Bordetella avium 197N 6267562 YP_786487.1 CDS BAV1971 NC_010645.1 <2115018 2115881 D hypothetical protein <2115018..2115881 Bordetella avium 197N 6267918 YP_786488.1 CDS BAV1972 NC_010645.1 2115888 2117282 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(2115888..2117282) Bordetella avium 197N 6265716 YP_786489.1 CDS BAV1973 NC_010645.1 2117355 2118083 R antioxidant complement(2117355..2118083) Bordetella avium 197N 6265717 YP_786490.1 CDS BAV1974 NC_010645.1 2118237 2118440 R heavy metal transport protein complement(2118237..2118440) Bordetella avium 197N 6265718 YP_786491.1 CDS BAV1975 NC_010645.1 2118845 2119240 D MerR family transcriptional regulator 2118845..2119240 Bordetella avium 197N 6265719 YP_786492.1 CDS rumA NC_010645.1 2119237 2120667 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(2119237..2120667) Bordetella avium 197N 6265720 YP_786493.1 CDS BAV1977 NC_010645.1 2120780 2121328 R hypothetical protein complement(2120780..2121328) Bordetella avium 197N 6267737 YP_786494.1 CDS BAV1978 NC_010645.1 2121432 2122211 R hypothetical protein complement(2121432..2122211) Bordetella avium 197N 6265721 YP_786495.1 CDS BAV1979 NC_010645.1 2122208 2123059 R peptidoglycan-binding peptidase complement(2122208..2123059) Bordetella avium 197N 6265722 YP_786496.1 CDS pcm NC_010645.1 2123077 2123871 R protein-L-isoaspartate O-methyltransferase complement(2123077..2123871) Bordetella avium 197N 6265723 YP_786497.1 CDS surE NC_010645.1 2123856 2124614 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(2123856..2124614) Bordetella avium 197N 6267490 YP_786498.1 CDS BAV1982 NC_010645.1 2124784 2125422 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 2124784..2125422 Bordetella avium 197N 6267784 YP_786499.1 CDS gcp NC_010645.1 2125575 2126612 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(2125575..2126612) Bordetella avium 197N 6265724 YP_786500.1 CDS BAV1984 NC_010645.1 2126711 2128003 D xanthine/uracil permease 2126711..2128003 Bordetella avium 197N 6267058 YP_786501.1 CDS BAV1985 NC_010645.1 2128157 2129170 D luciferase-like monooxygenase 2128157..2129170 Bordetella avium 197N 6265725 YP_786502.1 CDS trxC NC_010645.1 2129282 2129665 D Also similar to BAV2379 (40.000 38d.); thioredoxin 2 2129282..2129665 Bordetella avium 197N 6265726 YP_786503.1 CDS BAV1987 NC_010645.1 2129668 2130270 R hypothetical protein complement(2129668..2130270) Bordetella avium 197N 6267901 YP_786504.1 CDS BAV1988 NC_010645.1 2130293 2131084 R ABC transporter substrate binding protein complement(2130293..2131084) Bordetella avium 197N 6265727 YP_786505.1 CDS BAV1989 NC_010645.1 2131081 2131848 R ABC transporter permease complement(2131081..2131848) Bordetella avium 197N 6265728 YP_786506.1 CDS BAV1990 NC_010645.1 2131845 2132843 R ABC transporter substrate-binding protein complement(2131845..2132843) Bordetella avium 197N 6265729 YP_786507.1 CDS BAV1991 NC_010645.1 2132872 2133630 R ABC transporter ATP-binding protein complement(2132872..2133630) Bordetella avium 197N 6265730 YP_786508.1 CDS BAV1992 NC_010645.1 2133794 >2135398 R ABC transporter ATP-binding protein complement(2133794..>2135398) Bordetella avium 197N 6265731 YP_786509.1 CDS ldcA NC_010645.1 2135598 2136557 R muramoyltetrapeptide carboxypeptidase complement(2135598..2136557) Bordetella avium 197N 6265732 YP_786510.1 CDS BAV1994 NC_010645.1 2136554 >2137027 R zinc-binding cytidine/deoxycytidylate deaminase complement(2136554..>2137027) Bordetella avium 197N 6267282 YP_786511.1 CDS BAV1995 NC_010645.1 2137020 2137868 R hypothetical protein complement(2137020..2137868) Bordetella avium 197N 6265733 YP_786512.1 CDS BAV1996 NC_010645.1 2137954 2138379 R No similarity outside of the Bordetellae; hypothetical protein complement(2137954..2138379) Bordetella avium 197N 6265734 YP_786513.1 CDS phaG NC_010645.1 2138486 2138839 R subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit G complement(2138486..2138839) Bordetella avium 197N 6265735 YP_786514.1 CDS phaF NC_010645.1 2138836 2139117 R subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit F complement(2138836..2139117) Bordetella avium 197N 6267516 YP_786515.1 CDS phaE NC_010645.1 2139117 2139599 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E complement(2139117..2139599) Bordetella avium 197N 6267515 YP_786516.1 CDS phaD NC_010645.1 2139601 2141223 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(2139601..2141223) Bordetella avium 197N 6267514 YP_786517.1 CDS phaC NC_010645.1 2141220 2141564 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C complement(2141220..2141564) Bordetella avium 197N 6267513 YP_786518.1 CDS phaAB NC_010645.1 2141566 2144487 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A complement(2141566..2144487) Bordetella avium 197N 6267512 YP_786519.1 CDS BAV2003 NC_010645.1 2144874 2147495 R GTP-binding protein complement(2144874..2147495) Bordetella avium 197N 6267511 YP_786520.1 CDS BAV2004 NC_010645.1 2147492 2148607 R exonuclease complement(2147492..2148607) Bordetella avium 197N 6265736 YP_786521.1 CDS dadA2 NC_010645.1 2148648 2149949 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(2148648..2149949) Bordetella avium 197N 6265737 YP_786522.1 CDS lrp NC_010645.1 2150088 2150555 D leucine-responsive regulatory protein 2150088..2150555 Bordetella avium 197N 6266849 YP_786523.1 CDS BAV2007 NC_010645.1 2150908 2151537 D membrane protein 2150908..2151537 Bordetella avium 197N 6267315 YP_786524.1 CDS BAV2008 NC_010645.1 2151621 2152751 D No similarity outside of the Bordetellae; hypothetical protein 2151621..2152751 Bordetella avium 197N 6265738 YP_786525.1 CDS murA NC_010645.1 2152781 2154082 D UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2152781..2154082 Bordetella avium 197N 6265739 YP_786526.1 CDS glpR NC_010645.1 2154244 2155005 D glycerol-3-phosphate regulon repressor 2154244..2155005 Bordetella avium 197N 6267398 YP_786527.1 CDS glpD NC_010645.1 2155034 2156635 D glycerol-3-phosphate dehydrogenase 2155034..2156635 Bordetella avium 197N 6267095 YP_786528.1 CDS BAV2012 NC_010645.1 2156673 2157194 D hypothetical protein 2156673..2157194 Bordetella avium 197N 6267093 YP_786529.1 CDS BAV2013 NC_010645.1 2157196 2157963 D hypothetical protein 2157196..2157963 Bordetella avium 197N 6265740 YP_786530.1 CDS BAV2014 NC_010645.1 2158094 2158534 D hypothetical protein 2158094..2158534 Bordetella avium 197N 6265741 YP_786531.1 CDS BAV2015 NC_010645.1 2158627 2159016 R hypothetical protein complement(2158627..2159016) Bordetella avium 197N 6265742 YP_786532.1 CDS BAV2016 NC_010645.1 2159154 2159975 D membrane-associated protease 2159154..2159975 Bordetella avium 197N 6265743 YP_786533.1 CDS BAV2017 NC_010645.1 2160137 2160553 R peptidyl-tRNA hydrolase domain-containing protein complement(2160137..2160553) Bordetella avium 197N 6265744 YP_786534.1 CDS BAV2018 NC_010645.1 2161003 2162022 D glycosyl transferase 2161003..2162022 Bordetella avium 197N 6265745 YP_786535.1 CDS BAV2019 NC_010645.1 2162110 2162742 D hypothetical protein 2162110..2162742 Bordetella avium 197N 6265746 YP_786536.1 CDS BAV2020 NC_010645.1 <2162771 2163217 D hypothetical protein <2162771..2163217 Bordetella avium 197N 6265747 YP_786537.1 CDS slyA NC_010645.1 2163442 2163909 D MarR family transcriptional regulator 2163442..2163909 Bordetella avium 197N 6265748 YP_786538.1 CDS BAV2022 NC_010645.1 2163906 2165945 D multidrug efflux protein 2163906..2165945 Bordetella avium 197N 6267757 YP_786539.1 CDS BAV2023 NC_010645.1 2165951 2166163 D component of multidrug efflux system 2165951..2166163 Bordetella avium 197N 6265749 YP_786540.1 CDS BAV2024 NC_010645.1 2166168 2167058 D multidrug resistance protein 2166168..2167058 Bordetella avium 197N 6265750 YP_786541.1 CDS BAV2025 NC_010645.1 2167087 2168526 D outer membrane multidrug efflux protein 2167087..2168526 Bordetella avium 197N 6265751 YP_786542.1 CDS BAV2026 NC_010645.1 2168529 2169239 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YpfH complement(2168529..2169239) Bordetella avium 197N 6265752 YP_786543.1 CDS BAV2027 NC_010645.1 2169433 2170134 D hypothetical protein 2169433..2170134 Bordetella avium 197N 6265753 YP_786544.1 CDS BAV2028 NC_010645.1 2170220 2171518 D hypothetical protein 2170220..2171518 Bordetella avium 197N 6265754 YP_786545.1 CDS dnaE2 NC_010645.1 2171534 2174680 D DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 2171534..2174680 Bordetella avium 197N 6265755 YP_786546.1 CDS dadA3 NC_010645.1 2174684 2175925 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(2174684..2175925) Bordetella avium 197N 6266890 YP_786547.1 CDS BAV2031 NC_010645.1 2176041 2176478 R hypothetical protein complement(2176041..2176478) Bordetella avium 197N 6266850 YP_786548.1 CDS hmp NC_010645.1 2176504 2177730 R flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase complement(2176504..2177730) Bordetella avium 197N 6265756 YP_786549.1 CDS BAV2033 NC_010645.1 2177863 2178324 D hypothetical protein 2177863..2178324 Bordetella avium 197N 6267186 YP_786550.1 CDS dinB NC_010645.1 2178330 2179412 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(2178330..2179412) Bordetella avium 197N 6265757 YP_786551.1 CDS BAV2035 NC_010645.1 2179579 2179989 D thioesterase-like protein 2179579..2179989 Bordetella avium 197N 6266880 YP_786552.1 CDS BAV2036 NC_010645.1 2179997 2180443 R . Seems to be unique to the Bordetellae.; lipoprotein complement(2179997..2180443) Bordetella avium 197N 6265758 YP_786553.1 CDS BAV2037 NC_010645.1 2180575 2182503 D peptidase 2180575..2182503 Bordetella avium 197N 6265759 YP_786554.1 CDS mrcA NC_010645.1 2182625 2185141 D penicillin-binding protein 2182625..2185141 Bordetella avium 197N 6265760 YP_786555.1 CDS pphA NC_010645.1 2185149 2185865 R serine/threonine protein phosphatase complement(2185149..2185865) Bordetella avium 197N 6267384 YP_786556.1 CDS BAV2040 NC_010645.1 2185995 2187161 D iron-regulated membrane protein 2185995..2187161 Bordetella avium 197N 6267559 YP_786557.1 CDS BAV2041 NC_010645.1 2187158 2187340 D membrane protein 2187158..2187340 Bordetella avium 197N 6265761 YP_786558.1 CDS BAV2042 NC_010645.1 2187576 2188631 D membrane protein 2187576..2188631 Bordetella avium 197N 6265762 YP_786559.1 CDS BAV2043 NC_010645.1 2188907 2189281 D ferredoxin 2188907..2189281 Bordetella avium 197N 6265763 YP_786560.1 CDS pmi NC_010645.1 2189339 2190403 R mannose-6-phosphate isomerase complement(2189339..2190403) Bordetella avium 197N 6265764 YP_786561.1 CDS BAV2045 NC_010645.1 2190534 2190746 R . Seems to be unique to the Bordetellae.; hypothetical protein complement(2190534..2190746) Bordetella avium 197N 6267546 YP_786562.1 CDS BAV2046 NC_010645.1 2190903 2191151 R . Seems to be unique to the Bordetellae.; hypothetical protein complement(2190903..2191151) Bordetella avium 197N 6265765 YP_786563.1 CDS irlS NC_010645.1 2191372 2192790 R heavy metal sensing two-component sytem, sensor kinase complement(2191372..2192790) Bordetella avium 197N 6265766 YP_786564.1 CDS irlR NC_010645.1 2192787 >2193458 R heavy metal sensing two-component sytem response regulator complement(2192787..>2193458) Bordetella avium 197N 6267249 YP_786565.1 CDS BAV2049 NC_010645.1 2193606 2194091 D hypothetical protein 2193606..2194091 Bordetella avium 197N 6267248 YP_786566.1 CDS BAV2050 NC_010645.1 2194105 2194524 D hypothetical protein 2194105..2194524 Bordetella avium 197N 6265767 YP_786567.1 CDS BAV2051 NC_010645.1 2194577 2194891 R hypothetical protein complement(2194577..2194891) Bordetella avium 197N 6265768 YP_786568.1 CDS BAV2052 NC_010645.1 2194907 2195494 R lipoprotein complement(2194907..2195494) Bordetella avium 197N 6265769 YP_786569.1 CDS BAV2053 NC_010645.1 2195667 2196590 R membrane protein complement(2195667..2196590) Bordetella avium 197N 6265770 YP_786570.1 CDS BAV2054 NC_010645.1 2196741 2197211 D AsnC family transcriptional regulator 2196741..2197211 Bordetella avium 197N 6265771 YP_786571.1 CDS BAV2055 NC_010645.1 2197260 2197538 D . Seems to be unique to the Bordetellae.; hypothetical protein 2197260..2197538 Bordetella avium 197N 6265772 YP_786572.1 CDS BAV2056 NC_010645.1 2197535 2197966 D hypothetical protein 2197535..2197966 Bordetella avium 197N 6265773 YP_786573.1 CDS betT NC_010645.1 2198117 2200078 D high-affinity choline transport protein 2198117..2200078 Bordetella avium 197N 6265774 YP_786574.1 CDS BAV2058 NC_010645.1 2200262 >2200993 R endonuclease complement(2200262..>2200993) Bordetella avium 197N 6266700 YP_786575.1 CDS BAV2058A NC_010645.1 2201649 2201981 R hypothetical protein complement(2201649..2201981) Bordetella avium 197N 6265775 YP_786576.1 CDS BAV2059 NC_010645.1 2202162 2202569 R hypothetical protein complement(2202162..2202569) Bordetella avium 197N 6265776 YP_786577.1 CDS BAV2060 NC_010645.1 2202801 2202923 R Doubtful CDS.; hypothetical protein complement(2202801..2202923) Bordetella avium 197N 6265777 YP_786578.1 CDS BAV2061 NC_010645.1 2202972 >2203106 R phage protein (partial) complement(2202972..>2203106) Bordetella avium 197N 6265778 YP_786579.1 CDS BAV2062 NC_010645.1 2203253 2203735 R ribonuclease complement(2203253..2203735) Bordetella avium 197N 6265779 YP_786580.1 CDS BAV2063 NC_010645.1 2203862 2204041 D Doubtful CDS.; hypothetical protein 2203862..2204041 Bordetella avium 197N 6265780 YP_786581.1 CDS BAV2064 NC_010645.1 2204610 2204981 R MerR family transcriptional regulator complement(2204610..2204981) Bordetella avium 197N 6267878 YP_786582.1 CDS ihfA NC_010645.1 2205039 2205389 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(2205039..2205389) Bordetella avium 197N 6265782 YP_786583.1 CDS pheT NC_010645.1 2205392 2207806 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(2205392..2207806) Bordetella avium 197N 6267232 YP_786584.1 CDS pheS NC_010645.1 2207819 2208841 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2207819..2208841) Bordetella avium 197N 6267526 YP_786585.1 CDS rplT NC_010645.1 2208914 2209273 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2208914..2209273) Bordetella avium 197N 6267525 YP_786586.1 CDS rpmI NC_010645.1 2209289 2209486 R 50S ribosomal protein L35 complement(2209289..2209486) Bordetella avium 197N 6267690 YP_786587.1 CDS comM NC_010645.1 2209839 2211368 R competence protein complement(2209839..2211368) Bordetella avium 197N 6267703 YP_786588.1 CDS BAV2071 NC_010645.1 2211645 2211908 R hypothetical protein complement(2211645..2211908) Bordetella avium 197N 6266802 YP_786589.1 CDS BAV2072 NC_010645.1 2212306 2213502 D ferredoxin reductase 2212306..2213502 Bordetella avium 197N 6265783 YP_786590.1 CDS glnK NC_010645.1 2214129 2214467 D nitrogen regulatory protein P-II 2214129..2214467 Bordetella avium 197N 6265784 YP_786591.1 CDS amtB NC_010645.1 2214503 2215741 D ammonium transporter 2214503..2215741 Bordetella avium 197N 6267086 YP_786592.1 CDS BAV2075 NC_010645.1 2215904 2216392 R Weakly similar to steroid delta-isomerases from Nocardioides simplex and Pseudomonas putida.; isomerase complement(2215904..2216392) Bordetella avium 197N 6266628 YP_786593.1 CDS BAV2076 NC_010645.1 2216395 >2217177 R short-chain dehydrogenase complement(2216395..>2217177) Bordetella avium 197N 6265785 YP_786594.1 CDS BAV2077 NC_010645.1 2217182 2217718 R lipoprotein complement(2217182..2217718) Bordetella avium 197N 6265786 YP_786595.1 CDS BAV2078 NC_010645.1 2217715 2219037 R transporter complement(2217715..2219037) Bordetella avium 197N 6265787 YP_786596.1 CDS BAV2079 NC_010645.1 2219034 2219612 R hypothetical protein complement(2219034..2219612) Bordetella avium 197N 6265788 YP_786597.1 CDS cfa NC_010645.1 2219636 2220856 R cyclopropane-fatty-acyl-phospholipid synthase complement(2219636..2220856) Bordetella avium 197N 6265789 YP_786598.1 CDS BAV2081 NC_010645.1 2220859 2221677 R hypothetical protein complement(2220859..2221677) Bordetella avium 197N 6266770 YP_786599.1 CDS BAV2082 NC_010645.1 2221674 2222972 R dehydrogenase complement(2221674..2222972) Bordetella avium 197N 6265790 YP_786600.1 CDS BAV2083 NC_010645.1 2223286 2224194 D hypothetical protein 2223286..2224194 Bordetella avium 197N 6265791 YP_786601.1 CDS putA NC_010645.1 2224368 2228174 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(2224368..2228174) Bordetella avium 197N 6265792 YP_786602.1 CDS BAV2085 NC_010645.1 2228319 2228969 R lipoprotein complement(2228319..2228969) Bordetella avium 197N 6267550 YP_786603.1 CDS pqiB NC_010645.1 2228974 2230641 R paraquat-inducible protein B complement(2228974..2230641) Bordetella avium 197N 6265793 YP_786604.1 CDS pqiA NC_010645.1 2230673 2231974 R paraquat-inducible protein A complement(2230673..2231974) Bordetella avium 197N 6267567 YP_786605.1 CDS clpA NC_010645.1 2231977 >2234280 R ATP-dependent clp protease ATP-binding complement(2231977..>2234280) Bordetella avium 197N 6267566 YP_786606.1 CDS pbpC NC_010645.1 2234334 2236457 R penicillin-binding protein 1C complement(2234334..2236457) Bordetella avium 197N 6266790 YP_786607.1 CDS BAV2090 NC_010645.1 2236475 >2241589 R peptidase inhibitor complement(2236475..>2241589) Bordetella avium 197N 6267487 YP_786608.1 CDS clpS NC_010645.1 2241750 2242064 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(2241750..2242064) Bordetella avium 197N 6265794 YP_786609.1 CDS cspD NC_010645.1 2242287 2242532 D Also similar to BAV1492 , BAV1494, BAV2327 and BAV3424.; cold shock-like protein 2242287..2242532 Bordetella avium 197N 6266793 YP_786610.1 CDS BAV2093 NC_010645.1 2242662 2243111 D hypothetical protein 2242662..2243111 Bordetella avium 197N 6266818 YP_786611.1 CDS paaJ NC_010645.1 2243221 2244426 R catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase complement(2243221..2244426) Bordetella avium 197N 6265795 YP_786612.1 CDS msrB NC_010645.1 2244423 >2244608 R Partial CDS. Partially similar to peptide methionine sulfoxide reductase, MsrB, from Salmonella typhimurium and S. typhi; peptide methionine sulfoxide reductase (partial) complement(2244423..>2244608) Bordetella avium 197N 6267474 YP_786613.1 CDS sodB NC_010645.1 2244612 2245190 R superoxide dismutase complement(2244612..2245190) Bordetella avium 197N 6267394 YP_786614.1 CDS xseA NC_010645.1 2245283 2246641 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(2245283..2246641) Bordetella avium 197N 6267762 YP_786615.1 CDS exbB2 NC_010645.1 2246987 2247583 D biopolymer transport protein 2246987..2247583 Bordetella avium 197N 6267945 YP_786616.1 CDS exbD2 NC_010645.1 2247580 2247987 D biopolymer transport protein 2247580..2247987 Bordetella avium 197N 6266939 YP_786617.1 CDS lpxK NC_010645.1 2247984 2249012 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2247984..2249012 Bordetella avium 197N 6266941 YP_786618.1 CDS BAV2101 NC_010645.1 2249040 2249231 D hypothetical protein 2249040..2249231 Bordetella avium 197N 6267314 YP_786619.1 CDS kdsB NC_010645.1 2249228 2250052 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2249228..2250052 Bordetella avium 197N 6265796 YP_786620.1 CDS adk NC_010645.1 2250148 2250804 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2250148..2250804 Bordetella avium 197N 6267270 YP_786621.1 CDS BAV2104 NC_010645.1 2250884 2251642 D 3-hydroxyacyl-CoA dehydrogenase 2250884..2251642 Bordetella avium 197N 6266605 YP_786622.1 CDS mviN NC_010645.1 2251703 2253262 D membrane protein 2251703..2253262 Bordetella avium 197N 6265797 YP_786623.1 CDS BAV2106 NC_010645.1 <2253507 2254526 D transmembrane sensor protein <2253507..2254526 Bordetella avium 197N 6267408 YP_786624.1 CDS rpsT NC_010645.1 2254728 2254991 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2254728..2254991 Bordetella avium 197N 6265798 YP_786625.1 CDS BAV2108 NC_010645.1 2255058 2255213 D hypothetical protein 2255058..2255213 Bordetella avium 197N 6267727 YP_786626.1 CDS BAV2109 NC_010645.1 2255249 2256196 D reductase 2255249..2256196 Bordetella avium 197N 6265799 YP_786627.1 CDS BAV2110 NC_010645.1 2256268 2256558 R hypothetical protein complement(2256268..2256558) Bordetella avium 197N 6265800 YP_786628.1 CDS argD NC_010645.1 2256716 2257897 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 2256716..2257897 Bordetella avium 197N 6265801 YP_786629.1 CDS argF NC_010645.1 2257951 2258892 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 2257951..2258892 Bordetella avium 197N 6266645 YP_786630.1 CDS argG NC_010645.1 2258995 2260326 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 2258995..2260326 Bordetella avium 197N 6266647 YP_786631.1 CDS BAV2114 NC_010645.1 2260396 >2261748 R hypothetical protein complement(2260396..>2261748) Bordetella avium 197N 6266648 YP_786632.1 CDS kup NC_010645.1 2261837 2263717 R potassium uptake protein complement(2261837..2263717) Bordetella avium 197N 6265802 YP_786633.1 CDS BAV2116 NC_010645.1 2263701 2264846 R two-component sensor kinase complement(2263701..2264846) Bordetella avium 197N 6267278 YP_786634.1 CDS BAV2117 NC_010645.1 2264953 2265624 R two-component response regulator complement(2264953..2265624) Bordetella avium 197N 6265803 YP_786635.1 CDS exbD1 NC_010645.1 2265719 2266153 R biopolymer transport protein complement(2265719..2266153) Bordetella avium 197N 6265804 YP_786636.1 CDS exbB1 NC_010645.1 2266153 2267067 R biopolymer transport protein complement(2266153..2267067) Bordetella avium 197N 6266940 YP_786637.1 CDS tonB NC_010645.1 2267087 2267890 R siderophore-mediated iron transport protein complement(2267087..2267890) Bordetella avium 197N 6266938 YP_786638.1 CDS hopd NC_010645.1 2268507 2268779 R DNA-binding protein Hu-beta complement(2268507..2268779) Bordetella avium 197N 6267891 YP_786639.1 CDS BAV2122 NC_010645.1 2269095 2270345 R hypothetical protein complement(2269095..2270345) Bordetella avium 197N 6267193 YP_786640.1 CDS BAV2123 NC_010645.1 2270391 2271131 R tRNA/rRNA methyltransferase complement(2270391..2271131) Bordetella avium 197N 6265805 YP_786641.1 CDS rnr NC_010645.1 2271230 2273701 R ribonuclease R complement(2271230..2273701) Bordetella avium 197N 6265806 YP_786642.1 CDS BAV2125 NC_010645.1 2274040 2274645 R hypothetical protein complement(2274040..2274645) Bordetella avium 197N 6267865 YP_786643.1 CDS BAV2126 NC_010645.1 2275216 2275656 R acetyltransferase complement(2275216..2275656) Bordetella avium 197N 6267867 YP_786644.1 CDS arsB NC_010645.1 2275801 2277084 D arsenical pump membrane protein 2275801..2277084 Bordetella avium 197N 6265808 YP_786645.1 CDS BAV2128 NC_010645.1 2277142 2278350 D membrane protein 2277142..2278350 Bordetella avium 197N 6266662 YP_786646.1 CDS BAV2129 NC_010645.1 2278425 2278943 R membrane protein complement(2278425..2278943) Bordetella avium 197N 6265809 YP_786647.1 CDS BAV2130 NC_010645.1 2279040 2279951 D LysR family transcriptional regulator 2279040..2279951 Bordetella avium 197N 6265810 YP_786648.1 CDS BAV2131 NC_010645.1 2280008 2281660 D Similar to an internal region of the large subunit of ferredoxin-dependent glutamate synthase from many organisms.; membrane protein 2280008..2281660 Bordetella avium 197N 6265811 YP_786649.1 CDS BAV2132 NC_010645.1 2283601 2284638 D signaling membrane protein 2283601..2284638 Bordetella avium 197N 6267872 YP_786650.1 CDS BAV2133 NC_010645.1 2284689 2286041 D signaling protein 2284689..2286041 Bordetella avium 197N 6265813 YP_786651.1 CDS BAV2134 NC_010645.1 2286042 2286419 R outer membrane protein complement(2286042..2286419) Bordetella avium 197N 6265814 YP_786652.1 CDS speG NC_010645.1 2286471 2287055 R spermidine N(1)-acetyltransferase complement(2286471..2287055) Bordetella avium 197N 6265815 YP_786653.1 CDS pncA NC_010645.1 2287076 2287717 R pyrazinamidase/nicotinamidase complement(2287076..2287717) Bordetella avium 197N 6267765 YP_786654.1 CDS BAV2137 NC_010645.1 2287746 2288870 R membrane protein complement(2287746..2288870) Bordetella avium 197N 6267547 YP_786655.1 CDS BAV2138 NC_010645.1 2289594 >2289737 R Gene remnant. Similar to an internal region of Ralstonia solanacearum tyrosine recombinase XerD SWALL:XERD_RALSO (SWALL:Q8XWD0) (308 aa) fasta scores: E(): 9.4, 45.94 38d in 37 aa; tyrosine recombinase complement(2289594..>2289737) Bordetella avium 197N 6265816 YP_786656.1 CDS BAV2139 NC_010645.1 2289842 2290123 D . Seems to be unique to the Bordetellae.; hypothetical protein 2289842..2290123 Bordetella avium 197N 6265817 YP_786657.1 CDS BAV2140 NC_010645.1 2290189 2290863 D B-type cytochrome 2290189..2290863 Bordetella avium 197N 6265818 YP_786658.1 CDS BAV2141 NC_010645.1 2290930 2291373 R cytochrome c' complement(2290930..2291373) Bordetella avium 197N 6265819 YP_786659.1 CDS purB NC_010645.1 2291435 2292811 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2291435..2292811) Bordetella avium 197N 6265820 YP_786660.1 CDS BAV2143 NC_010645.1 2292956 2293564 D glutathione transferase 2292956..2293564 Bordetella avium 197N 6267594 YP_786661.1 CDS BAV2144 NC_010645.1 2293575 2294378 R membrane protein complement(2293575..2294378) Bordetella avium 197N 6265821 YP_786662.1 CDS mnmA NC_010645.1 2294458 2295570 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2294458..2295570) Bordetella avium 197N 6265822 YP_786663.1 CDS nntA2 NC_010645.1 2296841 2297149 D Similar to C-terminal of Escherichia coli NAD(P) transhydrogenase subunit alpha PntA SWALL:PNTA_ECOLI (SWALL:P07001); NAD(P) transhydrogenase subunit alpha part 2 2296841..2297149 Bordetella avium 197N 6267423 YP_786664.1 CDS nntB NC_010645.1 2297146 2298579 D NAD(P) transhydrogenase subunit beta 2297146..2298579 Bordetella avium 197N 6267424 YP_786665.1 CDS glcF NC_010645.1 2298576 2299811 R glycolate oxidase iron-sulfur subunit complement(2298576..2299811) Bordetella avium 197N 6267425 YP_786666.1 CDS glcE NC_010645.1 2299822 2300925 R glycolate oxidase FAD binding subunit complement(2299822..2300925) Bordetella avium 197N 6267074 YP_786667.1 CDS glcD1 NC_010645.1 2300935 2302434 R Also similar to the upstream CDS, BAV2152, (30.947 identity).; glycolate oxidase subunit complement(2300935..2302434) Bordetella avium 197N 6267073 YP_786668.1 CDS glcD2 NC_010645.1 2302606 2304015 R Also similar to the downstream CDS, BAV2151,(30.947 38dentity).; glycolate oxidase subunit complement(2302606..2304015) Bordetella avium 197N 6267071 YP_786669.1 CDS aroG2 NC_010645.1 2304208 >2305281 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2304208..>2305281) Bordetella avium 197N 6267072 YP_786670.1 CDS tldD NC_010645.1 2305544 2307004 R protease, modulator of DNA gyrase complement(2305544..2307004) Bordetella avium 197N 6266659 YP_786671.1 CDS bph3 NC_010645.1 2307550 2307912 D DNA-binding protein (histone) 2307550..2307912 Bordetella avium 197N 6267813 YP_786672.1 CDS BAV2156 NC_010645.1 2307973 2308617 R hypothetical protein complement(2307973..2308617) Bordetella avium 197N 6266726 YP_786673.1 CDS pepN NC_010645.1 2308770 2311466 D aminopeptidase N 2308770..2311466 Bordetella avium 197N 6265823 YP_786674.1 CDS fbp NC_010645.1 2311475 2312491 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 2311475..2312491 Bordetella avium 197N 6267501 YP_786675.1 CDS BAV2161 NC_010645.1 2322767 2322988 R lipoprotein complement(2322767..2322988) Bordetella avium 197N 6265825 YP_786676.1 CDS thrC NC_010645.1 2323478 2324887 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(2323478..2324887) Bordetella avium 197N 6265826 YP_786677.1 CDS hom NC_010645.1 2324884 2326188 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(2324884..2326188) Bordetella avium 197N 6267808 YP_786678.1 CDS BAV2164 NC_010645.1 2326185 2327372 R aminotransferase complement(2326185..2327372) Bordetella avium 197N 6267192 YP_786679.1 CDS BAV2165 NC_010645.1 2327597 2328058 D hypothetical protein 2327597..2328058 Bordetella avium 197N 6265827 YP_786680.1 CDS BAV2166 NC_010645.1 2328055 2328519 D antioxidant protein 2328055..2328519 Bordetella avium 197N 6265828 YP_786681.1 CDS BAV2167 NC_010645.1 2328569 2330215 D hypothetical protein 2328569..2330215 Bordetella avium 197N 6265829 YP_786682.1 CDS pdxA2 NC_010645.1 2330366 2331337 D Also similar to BAV0651, (48.318 38d.); 4-hydroxythreonine-4-phosphate dehydrogenase 2330366..2331337 Bordetella avium 197N 6265830 YP_786683.1 CDS BAV2169 NC_010645.1 2331424 2332380 D membrane protein 2331424..2332380 Bordetella avium 197N 6267494 YP_786684.1 CDS dnaB NC_010645.1 2332435 2333808 R unwinds double stranded DNA; replicative DNA helicase complement(2332435..2333808) Bordetella avium 197N 6265831 YP_786685.1 CDS BAV2171 NC_010645.1 2333805 >2334638 R hypothetical protein complement(2333805..>2334638) Bordetella avium 197N 6266888 YP_786686.1 CDS rplI NC_010645.1 2334751 2335206 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(2334751..2335206) Bordetella avium 197N 6265832 YP_786687.1 CDS rpsR NC_010645.1 2335221 2335493 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(2335221..2335493) Bordetella avium 197N 6267680 YP_786688.1 CDS priB NC_010645.1 2335586 2335909 R binds single-stranded DNA at the primosome assembly site; primosomal replication protein N complement(2335586..2335909) Bordetella avium 197N 6267725 YP_786689.1 CDS rpsF NC_010645.1 2335962 2336336 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(2335962..2336336) Bordetella avium 197N 6267571 YP_786690.1 CDS BAV2176 NC_010645.1 2336568 2337365 R similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase complement(2336568..2337365) Bordetella avium 197N 6267714 YP_786691.1 CDS dxs NC_010645.1 2337515 2339377 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(2337515..2339377) Bordetella avium 197N 6265833 YP_786692.1 CDS ispA NC_010645.1 2339420 2340331 R geranyltranstransferase complement(2339420..2340331) Bordetella avium 197N 6266911 YP_786693.1 CDS xseB NC_010645.1 2340340 2340576 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(2340340..2340576) Bordetella avium 197N 6267253 YP_786694.1 CDS BAV2180 NC_010645.1 2340898 2342049 D dioxygenase 2340898..2342049 Bordetella avium 197N 6267946 YP_786695.1 CDS BAV2181 NC_010645.1 2342169 2342738 D hypothetical protein 2342169..2342738 Bordetella avium 197N 6265834 YP_786696.1 CDS BAV2182 NC_010645.1 2342779 2343621 R thiosulfate sulfurtransferase complement(2342779..2343621) Bordetella avium 197N 6265835 YP_786697.1 CDS BAV2183 NC_010645.1 2343653 2344507 R membrane protein complement(2343653..2344507) Bordetella avium 197N 6265836 YP_786698.1 CDS htpX NC_010645.1 2344679 2345560 D putative metalloprotease; heat shock protein HtpX 2344679..2345560 Bordetella avium 197N 6265837 YP_786699.1 CDS BAV2185 NC_010645.1 2345599 2347215 R hypothetical protein complement(2345599..2347215) Bordetella avium 197N 6267217 YP_786700.1 CDS hcz NC_010645.1 2347432 2348421 R quinone oxidoreductase complement(2347432..2348421) Bordetella avium 197N 6265838 YP_786701.1 CDS BAV2187 NC_010645.1 2348453 2349403 R membrane protein complement(2348453..2349403) Bordetella avium 197N 6267147 YP_786702.1 CDS BAV2188 NC_010645.1 2349503 2350360 D membrane protein 2349503..2350360 Bordetella avium 197N 6265839 YP_786703.1 CDS marR NC_010645.1 2350413 2350913 D multiple antibiotic resistance protein 2350413..2350913 Bordetella avium 197N 6265840 YP_786704.1 CDS BAV2190 NC_010645.1 2351034 2352458 D outer membrane multidrug efflux protein 2351034..2352458 Bordetella avium 197N 6267330 YP_786705.1 CDS emrA NC_010645.1 2352468 2353655 D multidrug resistance protein A 2352468..2353655 Bordetella avium 197N 6265841 YP_786706.1 CDS emrB NC_010645.1 2353652 2355238 D multidrug resistance protein B 2353652..2355238 Bordetella avium 197N 6266920 YP_786707.1 CDS BAV2193 NC_010645.1 2355289 >2356356 R tartrate dehydrogenase complement(2355289..>2356356) Bordetella avium 197N 6266921 YP_786708.1 CDS BAV2194 NC_010645.1 2356416 2357930 R GntR family transcriptional regulator complement(2356416..2357930) Bordetella avium 197N 6265842 YP_786709.1 CDS BAV2195 NC_010645.1 <2358318 2359889 D ABC transporter substrate-binding protein <2358318..2359889 Bordetella avium 197N 6265843 YP_786710.1 CDS BAV2196 NC_010645.1 2359981 2360997 D ABC transporter permease 2359981..2360997 Bordetella avium 197N 6265844 YP_786711.1 CDS BAV2197 NC_010645.1 2360994 2361833 D ABC transporter permease 2360994..2361833 Bordetella avium 197N 6265845 YP_786712.1 CDS BAV2198 NC_010645.1 2361844 2363484 D ABC transporter ATP-binding protein 2361844..2363484 Bordetella avium 197N 6265846 YP_786713.1 CDS goaG1 NC_010645.1 2363487 2364773 D Also similar to BAV2548, (67.952 38d.); 4-aminobutyrate aminotransferase 2363487..2364773 Bordetella avium 197N 6265847 YP_786714.1 CDS BAV2200 NC_010645.1 2364792 2365082 D hypothetical protein 2364792..2365082 Bordetella avium 197N 6267106 YP_786715.1 CDS aphA1 NC_010645.1 2365103 2366167 D Also similar to BAV2226 (42.857 38d.); acetylpolyamine aminohydrolase 2365103..2366167 Bordetella avium 197N 6265848 YP_786716.1 CDS amaB NC_010645.1 2366183 2367445 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 2366183..2367445 Bordetella avium 197N 6266632 YP_786717.1 CDS BAV2203 NC_010645.1 2367442 2368329 D membrane protein 2367442..2368329 Bordetella avium 197N 6266618 YP_786718.1 CDS aldH NC_010645.1 2368326 2369807 D aldehyde dehydrogenase 2368326..2369807 Bordetella avium 197N 6265849 YP_786719.1 CDS BAV2205 NC_010645.1 2369857 >2370789 R 2-hydroxyacid dehydrogenase complement(2369857..>2370789) Bordetella avium 197N 6266612 YP_786720.1 CDS BAV2206 NC_010645.1 2370903 2372276 D aminotransferase 2370903..2372276 Bordetella avium 197N 6265850 YP_786721.1 CDS BAV2206A NC_010645.1 <2372642 2372896 D Gene remnant. Similar to the N-terminal region of Human immunodeficiency virus viral infectivity factor ViF; hypothetical protein <2372642..2372896 Bordetella avium 197N 6265851 YP_786722.1 CDS BAV2207 NC_010645.1 2373001 2373732 D hypothetical protein 2373001..2373732 Bordetella avium 197N 6265852 YP_786723.1 CDS purD NC_010645.1 2373800 2375137 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 2373800..2375137 Bordetella avium 197N 6265853 YP_786724.1 CDS hemF NC_010645.1 2375134 2376048 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2375134..2376048 Bordetella avium 197N 6267596 YP_786725.1 CDS nadD NC_010645.1 2376045 2376638 D nicotinate-nucleotide adenylyltransferase 2376045..2376638 Bordetella avium 197N 6267156 YP_786726.1 CDS BAV2211 NC_010645.1 2376676 2377086 D hypothetical protein 2376676..2377086 Bordetella avium 197N 6267410 YP_786727.1 CDS BAV2212 NC_010645.1 2377090 2377560 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 2377090..2377560 Bordetella avium 197N 6265854 YP_786728.1 CDS BAV2213 NC_010645.1 2377565 2378170 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 2377565..2378170 Bordetella avium 197N 6265855 YP_786729.1 CDS BAV2214 NC_010645.1 2378244 2378930 R hypothetical protein complement(2378244..2378930) Bordetella avium 197N 6265856 YP_786730.1 CDS BAV2215 NC_010645.1 2378932 2379558 R DNA-3-methyladenine glycosylase complement(2378932..2379558) Bordetella avium 197N 6265857 YP_786731.1 CDS BAV2216 NC_010645.1 2379564 2380250 R hypothetical protein complement(2379564..2380250) Bordetella avium 197N 6265858 YP_786732.1 CDS BAV2217 NC_010645.1 2380247 2380801 R similar to the C-terminal region of Escherichia coli AdA regulatory protein; similar to the C-terminal region of BAV3120, Ada,(45.399 38d.); methylated-DNA--protein-cysteine methyltransferase complement(2380247..2380801) Bordetella avium 197N 6265859 YP_786733.1 CDS dctA NC_010645.1 2380965 2382302 R aerobic c4-dicarboxylate transport protein complement(2380965..2382302) Bordetella avium 197N 6265860 YP_786734.1 CDS dctB NC_010645.1 <2382543 2384471 D two component sensor kinase for C4-dicarboxylate transport <2382543..2384471 Bordetella avium 197N 6266868 YP_786735.1 CDS dctD NC_010645.1 2384471 2385862 D two component response regulator for C4-dicarboxylate transport 2384471..2385862 Bordetella avium 197N 6266869 YP_786736.1 CDS tdcB NC_010645.1 2385848 2386810 R threonine dehydratase catabolic complement(2385848..2386810) Bordetella avium 197N 6266870 YP_786737.1 CDS BAV2223 NC_010645.1 2387678 2388415 R metal dependent phosphohydrolase complement(2387678..2388415) Bordetella avium 197N 6265861 YP_786738.1 CDS BAV2224 NC_010645.1 2388483 2390039 D hypothetical protein 2388483..2390039 Bordetella avium 197N 6265862 YP_786739.1 CDS BAV2225 NC_010645.1 2390331 2391641 D transporter 2390331..2391641 Bordetella avium 197N 6265863 YP_786740.1 CDS aphA2 NC_010645.1 2391658 2392677 D Also similar to BAV2201 (42.857 38d.); acetylpolyamine aminohydrolase 2391658..2392677 Bordetella avium 197N 6265864 YP_786741.1 CDS BAV2227 NC_010645.1 2393045 2394043 D LysR family transcriptional regulator 2393045..2394043 Bordetella avium 197N 6266633 YP_786742.1 CDS cafA NC_010645.1 2400733 2402196 D ribonuclease G 2400733..2402196 Bordetella avium 197N 6267955 YP_786743.1 CDS msbA NC_010645.1 2402263 2404038 R lipid A export ABC transporter ATP-binding/permease complement(2402263..2404038) Bordetella avium 197N 6266751 YP_786744.1 CDS rfaF NC_010645.1 2404136 2405104 D ADP-heptose--LPS heptosyltransferase II 2404136..2405104 Bordetella avium 197N 6267390 YP_786745.1 CDS BAV2231 NC_010645.1 2405118 2405882 D membrane protein 2405118..2405882 Bordetella avium 197N 6267640 YP_786746.1 CDS BAV2232 NC_010645.1 2405879 2406154 D hypothetical protein 2405879..2406154 Bordetella avium 197N 6265866 YP_786747.1 CDS rfaG NC_010645.1 2406160 2407266 R Also similar to BAV2238 (27.027 38d.); lipopolysaccharide core biosynthesis glycosyl protein complement(2406160..2407266) Bordetella avium 197N 6265867 YP_786748.1 CDS BAV2234 NC_010645.1 2407274 2407999 R lipopolysaccharide core oligosaccharide biosynthesis protein polysaccharide deacetylase complement(2407274..2407999) Bordetella avium 197N 6267641 YP_786749.1 CDS BAV2235 NC_010645.1 2408027 >2409136 R lipopolysaccharide core biosynthesis glycosyl transferase complement(2408027..>2409136) Bordetella avium 197N 6265868 YP_786750.1 CDS waaE NC_010645.1 2409133 2409891 R lipopolysaccharide core biosynthesis glycosyl transferase complement(2409133..2409891) Bordetella avium 197N 6265869 YP_786751.1 CDS BAV2237 NC_010645.1 2409888 2410736 R lipopolysaccharide core oligosaccharide biosynthesis protein complement(2409888..2410736) Bordetella avium 197N 6267931 YP_786752.1 CDS BAV2238 NC_010645.1 2410733 2411833 R Also similar to BAV2233 (27.027 38d.); lipopolysaccharide core biosynthesis glycosyl transferase complement(2410733..2411833) Bordetella avium 197N 6265870 YP_786753.1 CDS dnaE NC_010645.1 2411833 2415324 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(2411833..2415324) Bordetella avium 197N 6265871 YP_786754.1 CDS BAV2240 NC_010645.1 2415463 2416362 D aspartyl/asparaginyl beta-hydroxylase 2415463..2416362 Bordetella avium 197N 6266889 YP_786755.1 CDS hrpA NC_010645.1 2416420 2420298 R ATP-dependent helicase complement(2416420..2420298) Bordetella avium 197N 6265872 YP_786756.1 CDS argA NC_010645.1 2420506 2421861 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 2420506..2421861 Bordetella avium 197N 6267206 YP_786757.1 CDS BAV2243 NC_010645.1 2421971 2422243 D hypothetical protein 2421971..2422243 Bordetella avium 197N 6266641 YP_786758.1 CDS BAV2244 NC_010645.1 2422369 2422869 R acetyltransferase complement(2422369..2422869) Bordetella avium 197N 6265873 YP_786759.1 CDS phoU NC_010645.1 2422990 2423718 R phosphate transport system protein complement(2422990..2423718) Bordetella avium 197N 6265874 YP_786760.1 CDS rpiA NC_010645.1 2423872 2424546 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(2423872..2424546) Bordetella avium 197N 6267534 YP_786761.1 CDS BAV2247 NC_010645.1 2424632 >2425876 R hypothetical protein complement(2424632..>2425876) Bordetella avium 197N 6267673 YP_786762.1 CDS BAV2248 NC_010645.1 2426071 2426760 D hypothetical protein 2426071..2426760 Bordetella avium 197N 6265875 YP_786763.1 CDS BAV2249 NC_010645.1 2426761 2427453 R responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase complement(2426761..2427453) Bordetella avium 197N 6265876 YP_786764.1 CDS BAV2250 NC_010645.1 2427455 2427805 R arsenate reductase complement(2427455..2427805) Bordetella avium 197N 6265877 YP_786765.1 CDS potI NC_010645.1 2427802 2428608 R putrescine ABC transporter permease complement(2427802..2428608) Bordetella avium 197N 6265878 YP_786766.1 CDS potH NC_010645.1 2428605 2429507 R putrescine ABC transporter permease complement(2428605..2429507) Bordetella avium 197N 6267555 YP_786767.1 CDS potG NC_010645.1 2429504 2430631 R putrescine ABC transporter ATP-binding protein complement(2429504..2430631) Bordetella avium 197N 6267554 YP_786768.1 CDS potF NC_010645.1 2430638 2431741 R putrescine ABC transporter substrate-binding protein complement(2430638..2431741) Bordetella avium 197N 6267553 YP_786769.1 CDS BAV2255 NC_010645.1 2431882 >2432580 R catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase complement(2431882..>2432580) Bordetella avium 197N 6267552 YP_786770.1 CDS BAV2256 NC_010645.1 2432570 2432995 R hemoglobin-like protein complement(2432570..2432995) Bordetella avium 197N 6265879 YP_786771.1 CDS BAV2257 NC_010645.1 2432995 2435511 R membrane protein complement(2432995..2435511) Bordetella avium 197N 6265880 YP_786772.1 CDS BAV2258 NC_010645.1 2435622 2436596 D TRAP family transport system, substrate-binding transport protein 2435622..2436596 Bordetella avium 197N 6265881 YP_786773.1 CDS BAV2259 NC_010645.1 2436656 2437156 D TRAP family transport system, permease 2436656..2437156 Bordetella avium 197N 6265882 YP_786774.1 CDS BAV2260 NC_010645.1 2437190 2438467 D TRAP family transport system, permease 2437190..2438467 Bordetella avium 197N 6265883 YP_786775.1 CDS fmdA NC_010645.1 2438773 2440002 D formamidase 2438773..2440002 Bordetella avium 197N 6265884 YP_786776.1 CDS fmdB NC_010645.1 2440013 2440336 D hypothetical protein 2440013..2440336 Bordetella avium 197N 6267021 YP_786777.1 CDS tehA NC_010645.1 2440721 2441719 D tellurite resistance protein 2440721..2441719 Bordetella avium 197N 6267022 YP_786778.1 CDS trpF NC_010645.1 2442221 2442880 R catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase complement(2442221..2442880) Bordetella avium 197N 6267890 YP_786779.1 CDS truA NC_010645.1 2442927 2443730 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(2442927..2443730) Bordetella avium 197N 6267897 YP_786780.1 CDS BAV2266 NC_010645.1 2443737 2445251 R membrane protein complement(2443737..2445251) Bordetella avium 197N 6266674 YP_786781.1 CDS asd NC_010645.1 2445432 2446562 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(2445432..2446562) Bordetella avium 197N 6265885 YP_786782.1 CDS leuB NC_010645.1 2446695 2447771 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(2446695..2447771) Bordetella avium 197N 6266667 YP_786783.1 CDS leuD NC_010645.1 2447827 2448477 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(2447827..2448477) Bordetella avium 197N 6267288 YP_786784.1 CDS leuC2 NC_010645.1 2448491 2449948 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(2448491..2449948) Bordetella avium 197N 6267292 YP_786785.1 CDS BAV2271 NC_010645.1 2450038 >2450226 R ; Doubtful CDS.; hypothetical protein complement(2450038..>2450226) Bordetella avium 197N 6267290 YP_786786.1 CDS BAV2272 NC_010645.1 2450279 2451097 R exported peptidase complement(2450279..2451097) Bordetella avium 197N 6265886 YP_786787.1 CDS aroC NC_010645.1 2451112 2452170 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(2451112..2452170) Bordetella avium 197N 6265887 YP_786788.1 CDS BAV2274 NC_010645.1 2452209 >2453573 R ; Similar to the C_terminal region of many CDSs including Pseudomonas aeruginosa hypothetical signaling protein pa1727 SWALL:YH27_PSEAE (SWALL:Q9I310) (685 aa) fasta scores: E(): 5e-46, 35.98 38d in 453 aa; signaling protein complement(2452209..>2453573) Bordetella avium 197N 6266656 YP_786789.1 CDS BAV2275 NC_010645.1 2453789 2456521 D two-component sensor kinase 2453789..2456521 Bordetella avium 197N 6265888 YP_786790.1 CDS BAV2276 NC_010645.1 2456534 2457259 R two-component response regulator complement(2456534..2457259) Bordetella avium 197N 6265889 YP_786791.1 CDS BAV2277 NC_010645.1 2457410 2458882 R hypothetical protein complement(2457410..2458882) Bordetella avium 197N 6265890 YP_786792.1 CDS BAV2278 NC_010645.1 2459099 2460415 D Similar to over its N-terminal region to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 tRNA processing ribonuclease bn Rbn SWALL:RBN_ECOLI (SWALL:P32146) (290 aa) fasta scores: E(): 1.5e-34, 38.6 38d in 272 aa; membrane-associated ribonuclease 2459099..2460415 Bordetella avium 197N 6265891 YP_786793.1 CDS BAV2279 NC_010645.1 2460480 2460935 D hypothetical protein 2460480..2460935 Bordetella avium 197N 6265892 YP_786794.1 CDS dusA NC_010645.1 2460978 2461961 R tRNA-dihydrouridine synthase A complement(2460978..2461961) Bordetella avium 197N 6265893 YP_786795.1 CDS thrB NC_010645.1 2462110 2463078 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 2462110..2463078 Bordetella avium 197N 6266908 YP_786796.1 CDS BAV2282 NC_010645.1 2463145 2463948 D membrane protein 2463145..2463948 Bordetella avium 197N 6267807 YP_786797.1 CDS BAV2283 NC_010645.1 2464185 2465036 R pilus assembly protein complement(2464185..2465036) Bordetella avium 197N 6265894 YP_786798.1 CDS BAV2284 NC_010645.1 2465033 2465881 R pilus assembly protein complement(2465033..2465881) Bordetella avium 197N 6265895 YP_786799.1 CDS BAV2285 NC_010645.1 2465878 2467404 R pilus assembly protein complement(2465878..2467404) Bordetella avium 197N 6265896 YP_786800.1 CDS BAV2286 NC_010645.1 2467404 2468684 R pilus assembly protein complement(2467404..2468684) Bordetella avium 197N 6265897 YP_786801.1 CDS BAV2287 NC_010645.1 2468681 2469493 R pilus assembly protein complement(2468681..2469493) Bordetella avium 197N 6265898 YP_786802.1 CDS BAV2288 NC_010645.1 2469486 2470064 R pilus assembly protein complement(2469486..2470064) Bordetella avium 197N 6265899 YP_786803.1 CDS BAV2289 NC_010645.1 2470057 2470794 R pilus assembly protein complement(2470057..2470794) Bordetella avium 197N 6265900 YP_786804.1 CDS BAV2290 NC_010645.1 2470791 2472131 R pilus assembly protein complement(2470791..2472131) Bordetella avium 197N 6265901 YP_786805.1 CDS BAV2291 NC_010645.1 2472128 2472400 R type IV pilin complement(2472128..2472400) Bordetella avium 197N 6265902 YP_786806.1 CDS BAV2292 NC_010645.1 2472634 2473041 D heat shock protein 2472634..2473041 Bordetella avium 197N 6265903 YP_786807.1 CDS capR NC_010645.1 2473038 2475365 D ATP-dependent protease La 2473038..2475365 Bordetella avium 197N 6265904 YP_786808.1 CDS ecnB NC_010645.1 2475680 2475811 R Also similar to BAV2317 (44.186 38d.); entericidin B complement(2475680..2475811) Bordetella avium 197N 6266753 YP_786809.1 CDS BAV2295 NC_010645.1 2475831 2476526 R hydrolase complement(2475831..2476526) Bordetella avium 197N 6266915 YP_786810.1 CDS ppa NC_010645.1 2476771 2477304 R inorganic pyrophosphatase complement(2476771..2477304) Bordetella avium 197N 6265905 YP_786811.1 CDS hemY NC_010645.1 2477340 2478896 R protoheme IX synthesis protein complement(2477340..2478896) Bordetella avium 197N 6267557 YP_786812.1 CDS hemX NC_010645.1 2478901 2480052 R uroporphyrin-III C-methyltransferase complement(2478901..2480052) Bordetella avium 197N 6267163 YP_786813.1 CDS hemD NC_010645.1 2480089 2480889 R uroporphyrinogen-III synthase complement(2480089..2480889) Bordetella avium 197N 6267162 YP_786814.1 CDS hemC NC_010645.1 2480886 >2481830 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(2480886..>2481830) Bordetella avium 197N 6267154 YP_786815.1 CDS BAV2301 NC_010645.1 2481943 >2482671 R membrane protein complement(2481943..>2482671) Bordetella avium 197N 6267152 YP_786816.1 CDS BAV2302 NC_010645.1 2482797 2483495 R membrane protein complement(2482797..2483495) Bordetella avium 197N 6265906 YP_786817.1 CDS sucD NC_010645.1 2483774 2484655 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(2483774..2484655) Bordetella avium 197N 6265907 YP_786818.1 CDS sucC NC_010645.1 2484677 2485837 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(2484677..2485837) Bordetella avium 197N 6267778 YP_786819.1 CDS BAV2305 NC_010645.1 2485848 2486450 R hypothetical protein complement(2485848..2486450) Bordetella avium 197N 6267777 YP_786820.1 CDS metE NC_010645.1 2486668 2488968 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase complement(2486668..2488968) Bordetella avium 197N 6265908 YP_786821.1 CDS metR NC_010645.1 2489108 2490028 D LysR family transcriptional regulator 2489108..2490028 Bordetella avium 197N 6267336 YP_786822.1 CDS recX NC_010645.1 2490041 2490580 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(2490041..2490580) Bordetella avium 197N 6267344 YP_786823.1 CDS recA NC_010645.1 2490605 2491666 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(2490605..2491666) Bordetella avium 197N 6267635 YP_786824.1 CDS BAV2310 NC_010645.1 2491999 2492694 D two-component system response regulator 2491999..2492694 Bordetella avium 197N 6267627 YP_786825.1 CDS BAV2311 NC_010645.1 2492798 2494183 D two-component system sensor kinase 2492798..2494183 Bordetella avium 197N 6265909 YP_786826.1 CDS BAV2312 NC_010645.1 2494363 2496033 D transporter 2494363..2496033 Bordetella avium 197N 6265910 YP_786827.1 CDS rdgC NC_010645.1 2496560 2497462 D Required for efficient pilin antigenic variation; recombination associated protein 2496560..2497462 Bordetella avium 197N 6265911 YP_786828.1 CDS pyrB NC_010645.1 2497508 2498803 R catalyzes the conversion of carbamoyl phosphate and aspartate to form N-carbamoyl aspartate; aspartate carbamoyltransferase complement(2497508..2498803) Bordetella avium 197N 6267626 YP_786829.1 CDS BAV2315 NC_010645.1 2498888 2499250 R membrane protein complement(2498888..2499250) Bordetella avium 197N 6267607 YP_786830.1 CDS BAV2316 NC_010645.1 2499260 2499688 R . Seems to be unique to the Bordetellae.; lipoprotein complement(2499260..2499688) Bordetella avium 197N 6265912 YP_786831.1 CDS ecnA NC_010645.1 2499786 2499917 R Also similar to BAV2294 (44.186 38d.); entericidin A complement(2499786..2499917) Bordetella avium 197N 6265913 YP_786832.1 CDS BAV2318 NC_010645.1 2500056 2500394 R . Seems to be unique to the Bordetellae.; hypothetical protein complement(2500056..2500394) Bordetella avium 197N 6266914 YP_786833.1 CDS BAV2319 NC_010645.1 2500588 2500959 R hypothetical protein complement(2500588..2500959) Bordetella avium 197N 6267874 YP_786834.1 CDS BAV2320 NC_010645.1 2501111 2502547 D GntR family transcriptional regulator 2501111..2502547 Bordetella avium 197N 6265915 YP_786835.1 CDS BAV2321 NC_010645.1 2502652 2502897 R . Seems to be unique to the Bordetellae.; hypothetical protein complement(2502652..2502897) Bordetella avium 197N 6265916 YP_786836.1 CDS BAV2322 NC_010645.1 2503058 2503369 D lipoprotein 2503058..2503369 Bordetella avium 197N 6265917 YP_786837.1 CDS BAV2323 NC_010645.1 <2503642 2503776 D hypothetical protein <2503642..2503776 Bordetella avium 197N 6265918 YP_786838.1 CDS BAV2324 NC_010645.1 2503755 2504522 R metal-dependent phosphohydrolase complement(2503755..2504522) Bordetella avium 197N 6265919 YP_786839.1 CDS BAV2325 NC_010645.1 2504585 2504845 D hypothetical protein 2504585..2504845 Bordetella avium 197N 6265920 YP_786840.1 CDS BAV2326 NC_010645.1 2505452 2506171 D membrane protein 2505452..2506171 Bordetella avium 197N 6265921 YP_786841.1 CDS cspA3 NC_010645.1 2506304 2506513 R Also similar to BAV1492 (80.303 38d.), BAV1494 (70.769 38d.), BAV2092 (62.903 0d.) and BAV3424 (58.730 id.); cold shock protein complement(2506304..2506513) Bordetella avium 197N 6265922 YP_786842.1 CDS BAV2328 NC_010645.1 2506664 2507092 R hypothetical protein complement(2506664..2507092) Bordetella avium 197N 6266816 YP_786843.1 CDS rpoD NC_010645.1 2507399 2509579 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(2507399..2509579) Bordetella avium 197N 6267875 YP_786844.1 CDS dnaG NC_010645.1 2510416 2512440 R DNA primase complement(2510416..2512440) Bordetella avium 197N 6267707 YP_786845.1 CDS rpsU NC_010645.1 2512458 2512670 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(2512458..2512670) Bordetella avium 197N 6266891 YP_786846.1 CDS gpt NC_010645.1 2512980 2513519 R xanthine-guanine phosphoribosyltransferase complement(2512980..2513519) Bordetella avium 197N 6267728 YP_786847.1 CDS adeK NC_010645.1 2513646 2514941 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(2513646..2514941) Bordetella avium 197N 6267113 YP_786848.1 CDS hisZ NC_010645.1 2515017 2516174 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(2515017..2516174) Bordetella avium 197N 6266600 YP_786849.1 CDS hflC NC_010645.1 2516544 2517431 R HflC protein complement(2516544..2517431) Bordetella avium 197N 6267181 YP_786850.1 CDS hflK NC_010645.1 2517450 2518751 R HflK protein complement(2517450..2518751) Bordetella avium 197N 6267164 YP_786851.1 CDS hflX NC_010645.1 2518717 2519823 R GTP-binding protein complement(2518717..2519823) Bordetella avium 197N 6267165 YP_786852.1 CDS hfq NC_010645.1 2519911 2520147 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(2519911..2520147) Bordetella avium 197N 6267166 YP_786853.1 CDS hisC2 NC_010645.1 2520308 2521384 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(2520308..2521384) Bordetella avium 197N 6267167 YP_786854.1 CDS engA NC_010645.1 2521381 >2522736 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2521381..>2522736) Bordetella avium 197N 6267172 YP_786855.1 CDS BAV2341 NC_010645.1 2522763 2523923 R lipoprotein complement(2522763..2523923) Bordetella avium 197N 6266922 YP_786856.1 CDS BAV2342 NC_010645.1 2523926 2524564 R membrane protein complement(2523926..2524564) Bordetella avium 197N 6265924 YP_786857.1 CDS hisS NC_010645.1 2524567 2525853 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(2524567..2525853) Bordetella avium 197N 6265925 YP_786858.1 CDS ispG NC_010645.1 2525900 2527186 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2525900..2527186) Bordetella avium 197N 6267180 YP_786859.1 CDS BAV2345 NC_010645.1 2527199 2527687 R membrane protein complement(2527199..2527687) Bordetella avium 197N 6267059 YP_786860.1 CDS BAV2346 NC_010645.1 2527684 2528832 R hypothetical protein complement(2527684..2528832) Bordetella avium 197N 6265926 YP_786861.1 CDS ndk NC_010645.1 2528868 2529293 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(2528868..2529293) Bordetella avium 197N 6265927 YP_786862.1 CDS valS NC_010645.1 2529609 2532494 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 2529609..2532494 Bordetella avium 197N 6267419 YP_786863.1 CDS trmD NC_010645.1 2532874 2533686 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(2532874..2533686) Bordetella avium 197N 6267926 YP_786864.1 CDS rimM NC_010645.1 2533686 2534258 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(2533686..2534258) Bordetella avium 197N 6267830 YP_786865.1 CDS BAV2351 NC_010645.1 2534459 2534578 R hypothetical protein complement(2534459..2534578) Bordetella avium 197N 6267660 YP_786866.1 CDS rpsP NC_010645.1 2534586 2534846 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2534586..2534846) Bordetella avium 197N 6265928 YP_786867.1 CDS BAV2353 NC_010645.1 2534940 2535068 D hypothetical protein 2534940..2535068 Bordetella avium 197N 6267723 YP_786868.1 CDS BAV2354 NC_010645.1 2535185 2535796 D hypothetical protein 2535185..2535796 Bordetella avium 197N 6265929 YP_786869.1 CDS BAV2355 NC_010645.1 2535897 2536148 R hypothetical protein complement(2535897..2536148) Bordetella avium 197N 6265930 YP_786870.1 CDS alaS NC_010645.1 2536135 2538756 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2536135..2538756) Bordetella avium 197N 6265931 YP_786871.1 CDS BAV2357 NC_010645.1 2538834 >2539832 R type IV pilus-associated protein complement(2538834..>2539832) Bordetella avium 197N 6266611 YP_786872.1 CDS BAV2358 NC_010645.1 2539829 2540452 R type IV pilin subunit complement(2539829..2540452) Bordetella avium 197N 6265932 YP_786873.1 CDS BAV2359 NC_010645.1 2540449 2541549 R type IV pilus assembly protein complement(2540449..2541549) Bordetella avium 197N 6265933 YP_786874.1 CDS BAV2360 NC_010645.1 2541542 2543056 R type IV pilus assembly protein complement(2541542..2543056) Bordetella avium 197N 6265934 YP_786875.1 CDS BAV2361 NC_010645.1 2543049 2543471 R . Seems to be unique to the Bordetellae.; type IV pilus assembly protein complement(2543049..2543471) Bordetella avium 197N 6265935 YP_786876.1 CDS BAV2362 NC_010645.1 2543455 2544552 R . Seems to be unique to the Bordetellae.; type IV pilus assembly protein complement(2543455..2544552) Bordetella avium 197N 6265936 YP_786877.1 CDS BAV2363 NC_010645.1 2544545 2546107 R type IV pilus assembly protein complement(2544545..2546107) Bordetella avium 197N 6265937 YP_786878.1 CDS BAV2364 NC_010645.1 2546104 2546898 R type IV pilus assembly protein complement(2546104..2546898) Bordetella avium 197N 6265938 YP_786879.1 CDS BAV2365 NC_010645.1 2547468 2548799 R glycerol-3-phosphate-binding periplasmic protein complement(2547468..2548799) Bordetella avium 197N 6265939 YP_786880.1 CDS dadA4 NC_010645.1 2548804 2550060 R Also similar to BAV2005 (41.809 38d), BAV2030 (36.993 38d), BAV0960 (36.557 0d); D-amino acid dehydrogenase small subunit complement(2548804..2550060) Bordetella avium 197N 6265940 YP_786881.1 CDS BAV2367 NC_010645.1 2550305 2551348 R catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(2550305..2551348) Bordetella avium 197N 6266851 YP_786882.1 CDS panD NC_010645.1 2551400 2551768 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(2551400..2551768) Bordetella avium 197N 6265941 YP_786883.1 CDS sugE NC_010645.1 2552023 2552340 D transporter 2552023..2552340 Bordetella avium 197N 6267483 YP_786884.1 CDS BAV2370 NC_010645.1 2552354 2553355 R hypothetical protein complement(2552354..2553355) Bordetella avium 197N 6267779 YP_786885.1 CDS thpD NC_010645.1 2553467 2554393 R ectoine hydroxylase complement(2553467..2554393) Bordetella avium 197N 6265942 YP_786886.1 CDS ectC NC_010645.1 2554408 2554806 R N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; L-ectoine synthase complement(2554408..2554806) Bordetella avium 197N 6267806 YP_786887.1 CDS ectB NC_010645.1 2554803 2556110 R catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase complement(2554803..2556110) Bordetella avium 197N 6266918 YP_786888.1 CDS ectA NC_010645.1 2556213 2556782 R L-2,4-diaminobutyric acid acetyltransferase complement(2556213..2556782) Bordetella avium 197N 6266917 YP_786889.1 CDS BAV2375 NC_010645.1 2556779 2557318 R MarR family transcriptional regulator complement(2556779..2557318) Bordetella avium 197N 6266916 YP_786890.1 CDS parC NC_010645.1 2557536 2559854 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(2557536..2559854) Bordetella avium 197N 6265943 YP_786891.1 CDS BAV2377 NC_010645.1 2559868 2560455 R Unique to the Bordetellae. No other significant database matches.; membrane protein complement(2559868..2560455) Bordetella avium 197N 6267486 YP_786892.1 CDS nfxD NC_010645.1 2560455 2562467 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(2560455..2562467) Bordetella avium 197N 6265944 YP_786893.1 CDS fipA NC_010645.1 2562664 2563008 D Also similar to BAV1986 (40.000 38d.); thioredoxin 1 2562664..2563008 Bordetella avium 197N 6267420 YP_786894.1 CDS rho NC_010645.1 2563122 2564378 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2563122..2564378 Bordetella avium 197N 6266979 YP_786895.1 CDS BAV2381 NC_010645.1 2564460 >2568065 R hypothetical protein complement(2564460..>2568065) Bordetella avium 197N 6267422 YP_786896.1 CDS glnE NC_010645.1 2568149 2570920 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 2568149..2570920 Bordetella avium 197N 6265945 YP_786897.1 CDS BAV2383 NC_010645.1 2570975 2571649 D hypothetical protein 2570975..2571649 Bordetella avium 197N 6267082 YP_786898.1 CDS tdcG NC_010645.1 2571683 2573074 R L-serine dehydratase complement(2571683..2573074) Bordetella avium 197N 6265946 YP_786899.1 CDS BAV2385 NC_010645.1 2573246 2574910 D Na+/Pi-cotransporter 2573246..2574910 Bordetella avium 197N 6267794 YP_786900.1 CDS clcD NC_010645.1 2574949 2575740 R carboxymethylenebutenolidase complement(2574949..2575740) Bordetella avium 197N 6265947 YP_786901.1 CDS BAV2387 NC_010645.1 2575774 2576610 R zinc transporter complement(2575774..2576610) Bordetella avium 197N 6266789 YP_786902.1 CDS polA NC_010645.1 2576727 2579441 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(2576727..2579441) Bordetella avium 197N 6265948 YP_786903.1 CDS BAV2389 NC_010645.1 <2579551 2580123 D hypothetical protein <2579551..2580123 Bordetella avium 197N 6267551 YP_786904.1 CDS BAV2390 NC_010645.1 <2580212 2580649 D Similar to the C-terminal region of Bordetellae toxin.; toxin (partial) <2580212..2580649 Bordetella avium 197N 6265949 YP_786905.1 CDS bipA NC_010645.1 2580715 2582535 R GTP-binding protein complement(2580715..2582535) Bordetella avium 197N 6265950 YP_786906.1 CDS truB NC_010645.1 2582552 2583286 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(2582552..2583286) Bordetella avium 197N 6266718 YP_786907.1 CDS rbfA NC_010645.1 2583329 2583727 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(2583329..2583727) Bordetella avium 197N 6267899 YP_786908.1 CDS infB NC_010645.1 2583753 2586857 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(2583753..2586857) Bordetella avium 197N 6267623 YP_786909.1 CDS nusA NC_010645.1 2586934 2588412 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(2586934..2588412) Bordetella avium 197N 6267246 YP_786910.1 CDS BAV2396 NC_010645.1 2588409 2588888 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(2588409..2588888) Bordetella avium 197N 6267447 YP_786911.1 CDS rluB NC_010645.1 2589338 2590711 R This CDS is extended at the C-terminus end relative to its Escherichia coli orthologue.; ribosomal large subunit pseudouridine synthase B complement(2589338..2590711) Bordetella avium 197N 6265951 YP_786912.1 CDS BAV2398 NC_010645.1 2591062 2592057 R hypothetical protein complement(2591062..2592057) Bordetella avium 197N 6267664 YP_786913.1 CDS tpr NC_010645.1 2592262 2592363 D protamine-like protein 2592262..2592363 Bordetella avium 197N 6267873 YP_786914.1 CDS BAV2400 NC_010645.1 2592603 2592761 D hypothetical protein 2592603..2592761 Bordetella avium 197N 6267824 YP_786915.1 CDS BAV2401 NC_010645.1 2592973 2594166 R hypothetical protein complement(2592973..2594166) Bordetella avium 197N 6265953 YP_786916.1 CDS maaI NC_010645.1 2594649 2595293 R maleylacetoacetate isomerase complement(2594649..2595293) Bordetella avium 197N 6267884 YP_786917.1 CDS ispH NC_010645.1 2595356 2596342 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(2595356..2596342) Bordetella avium 197N 6267320 YP_786918.1 CDS fkpB NC_010645.1 2596342 2596797 R FkbP-type peptidyl-prolyl cis-trans isomerase complement(2596342..2596797) Bordetella avium 197N 6267257 YP_786919.1 CDS radC NC_010645.1 2596871 2597548 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 2596871..2597548 Bordetella avium 197N 6266983 YP_786920.1 CDS BAV2406 NC_010645.1 2597650 2598279 D cyclase 2597650..2598279 Bordetella avium 197N 6267621 YP_786921.1 CDS BAV2407 NC_010645.1 2598372 2599211 D tryptophan 2,3-dioxygenase 2598372..2599211 Bordetella avium 197N 6265955 YP_786922.1 CDS rpmE2 NC_010645.1 2599387 2599650 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 2599387..2599650 Bordetella avium 197N 6265956 YP_786923.1 CDS BAV2409 NC_010645.1 <2599811 2601541 D membrane protein <2599811..2601541 Bordetella avium 197N 6267700 YP_786924.1 CDS norM NC_010645.1 2601538 2602929 D multidrug resistance protein 2601538..2602929 Bordetella avium 197N 6265957 YP_786925.1 CDS BAV2411 NC_010645.1 2603000 2603206 R hypothetical protein complement(2603000..2603206) Bordetella avium 197N 6267426 YP_786926.1 CDS BAV2412 NC_010645.1 2603366 2604124 R membrane protein complement(2603366..2604124) Bordetella avium 197N 6265958 YP_786927.1 CDS radA NC_010645.1 2604186 2605493 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(2604186..2605493) Bordetella avium 197N 6265959 YP_786928.1 CDS BAV2414 NC_010645.1 2605708 2606310 D . Seems to be unique to the Bordetellae.; hypothetical protein 2605708..2606310 Bordetella avium 197N 6267619 YP_786929.1 CDS BAV2415 NC_010645.1 2606327 2607043 R short chain dehydrogenase complement(2606327..2607043) Bordetella avium 197N 6265960 YP_786930.1 CDS alnB NC_010645.1 2607159 2608283 R alanine racemase, catabolic complement(2607159..2608283) Bordetella avium 197N 6265961 YP_786931.1 CDS BAV2417 NC_010645.1 2608384 2609205 D phytoene synthase 2608384..2609205 Bordetella avium 197N 6266614 YP_786932.1 CDS BAV2418 NC_010645.1 2609202 2610065 D phytoene synthase 2609202..2610065 Bordetella avium 197N 6265962 YP_786933.1 CDS BAV2419 NC_010645.1 2610062 2611372 D zeta-carotene desaturase 2610062..2611372 Bordetella avium 197N 6265963 YP_786934.1 CDS crcB NC_010645.1 2611375 2611764 R membrane protein complement(2611375..2611764) Bordetella avium 197N 6265964 YP_786935.1 CDS BAV2421 NC_010645.1 2611778 2612338 R membrane protein complement(2611778..2612338) Bordetella avium 197N 6266812 YP_786936.1 CDS BAV2422 NC_010645.1 2612542 2613990 R N-acyl-D-glutamate deacylase complement(2612542..2613990) Bordetella avium 197N 6265965 YP_786937.1 CDS BAV2423 NC_010645.1 2614101 2615111 D LysR family transcriptional regulator 2614101..2615111 Bordetella avium 197N 6265966 YP_786938.1 CDS clpB NC_010645.1 2615092 2617695 R ATP-dependent protease ATPase subunit complement(2615092..2617695) Bordetella avium 197N 6265967 YP_786939.1 CDS btr NC_010645.1 2618093 2618821 D previously sequenced in Bordetella pertussis as transcriptional regulatory protein Btr; fumarate and nitrate reduction regulatory protein 2618093..2618821 Bordetella avium 197N 6266791 YP_786940.1 CDS BAV2426 NC_010645.1 2618828 2619943 D hypothetical protein 2618828..2619943 Bordetella avium 197N 6266743 YP_786941.1 CDS BAV2427 NC_010645.1 2619940 2620281 R ferredoxin complement(2619940..2620281) Bordetella avium 197N 6265968 YP_786942.1 CDS nudF NC_010645.1 2620278 2620862 R ADP-ribose pyrophosphatase complement(2620278..2620862) Bordetella avium 197N 6265969 YP_786943.1 CDS BAV2429 NC_010645.1 2620931 2621695 R membrane protein complement(2620931..2621695) Bordetella avium 197N 6267431 YP_786944.1 CDS BAV2430 NC_010645.1 2621779 2622672 D LysR family transcriptional regulator 2621779..2622672 Bordetella avium 197N 6265970 YP_786945.1 CDS BAV2431 NC_010645.1 2622682 2622921 R hypothetical protein complement(2622682..2622921) Bordetella avium 197N 6265971 YP_786946.1 CDS BAV2432 NC_010645.1 2622992 2623312 R hypothetical protein complement(2622992..2623312) Bordetella avium 197N 6265972 YP_786947.1 CDS BAV2433 NC_010645.1 <2623453 2625177 D hypothetical protein <2623453..2625177 Bordetella avium 197N 6265973 YP_786948.1 CDS BAV2434 NC_010645.1 2625241 2625666 D lipoprotein 2625241..2625666 Bordetella avium 197N 6265974 YP_786949.1 CDS BAV2435 NC_010645.1 2625658 2625843 R hypothetical protein complement(2625658..2625843) Bordetella avium 197N 6265975 YP_786950.1 CDS BAV2436 NC_010645.1 2625959 2626591 D hypothetical protein 2625959..2626591 Bordetella avium 197N 6265976 YP_786951.1 CDS BAV2437 NC_010645.1 2626609 2627217 R Weakly similar to several hypothetical proteins.; hypothetical protein complement(2626609..2627217) Bordetella avium 197N 6265977 YP_786952.1 CDS BAV2438 NC_010645.1 2627417 2627629 D hypothetical protein 2627417..2627629 Bordetella avium 197N 6265978 YP_786953.1 CDS BAV2439 NC_010645.1 2627739 2629001 R transporter complement(2627739..2629001) Bordetella avium 197N 6265979 YP_786954.1 CDS BAV2441 NC_010645.1 2629436 2630239 D catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis; putative L-aspartate dehydrogenase 2629436..2630239 Bordetella avium 197N 6265981 YP_786955.1 CDS BAV2442 NC_010645.1 2630384 2632462 D signaling protein 2630384..2632462 Bordetella avium 197N 6265982 YP_786956.1 CDS BAV2443 NC_010645.1 2632556 2633671 D membrane protein 2632556..2633671 Bordetella avium 197N 6265983 YP_786957.1 CDS hndJ NC_010645.1 2633643 2634404 R ABC transporter permease complement(2633643..2634404) Bordetella avium 197N 6265984 YP_786958.1 CDS hndI NC_010645.1 2634401 >2635333 R ABC transporter ATP-binding protein complement(2634401..>2635333) Bordetella avium 197N 6267188 YP_786959.1 CDS ohr NC_010645.1 2635486 2635911 R organic hydroperoxide resistance protein complement(2635486..2635911) Bordetella avium 197N 6267187 YP_786960.1 CDS ohrR NC_010645.1 2636041 2636511 R MarR family transcriptional regulator complement(2636041..2636511) Bordetella avium 197N 6267455 YP_786961.1 CDS bioA NC_010645.1 2636581 2637840 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate transaminase complement(2636581..2637840) Bordetella avium 197N 6267456 YP_786962.1 CDS bioF NC_010645.1 2637936 2639090 D 8-amino-7-oxononanoate synthase 2637936..2639090 Bordetella avium 197N 6266713 YP_786963.1 CDS bioH NC_010645.1 2639087 2639725 D biotin biosynthesis protein 2639087..2639725 Bordetella avium 197N 6266716 YP_786964.1 CDS bioCD NC_010645.1 2639722 2641119 D bifunctional biotin synthesis protein BioCD 2639722..2641119 Bordetella avium 197N 6266717 YP_786965.1 CDS queF NC_010645.1 2646850 2647671 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 2646850..2647671 Bordetella avium 197N 6265985 YP_786966.1 CDS BAV2454 NC_010645.1 2647685 2648914 R transporter complement(2647685..2648914) Bordetella avium 197N 6265986 YP_786967.1 CDS pgsA NC_010645.1 2649044 2649616 R CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2649044..2649616) Bordetella avium 197N 6265987 YP_786968.1 CDS uvrC NC_010645.1 2649659 2651392 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2649659..2651392) Bordetella avium 197N 6267510 YP_786969.1 CDS nagZ NC_010645.1 2651445 2652497 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(2651445..2652497) Bordetella avium 197N 6267924 YP_786970.1 CDS acpS NC_010645.1 2652508 2652951 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(2652508..2652951) Bordetella avium 197N 6267417 YP_786971.1 CDS pdxJ NC_010645.1 2653067 2653792 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(2653067..2653792) Bordetella avium 197N 6266590 YP_786972.1 CDS BAV2460 NC_010645.1 2653789 2655315 R multidrug efflux system outer membrane protein complement(2653789..2655315) Bordetella avium 197N 6267497 YP_786973.1 CDS BAV2461 NC_010645.1 2655312 2658536 R multidrug efflux system transmembrane protein complement(2655312..2658536) Bordetella avium 197N 6265988 YP_786974.1 CDS BAV2462 NC_010645.1 2658597 2659781 R multidrug efflux system inner membrane protein complement(2658597..2659781) Bordetella avium 197N 6265989 YP_786975.1 CDS BAV2463 NC_010645.1 2659969 >2660352 R Partial CDS. Similar to the C-terminal region of many regulators including Rhodobacter sphaeroides DmsR and Escherichia coli aerobic respiration control protein ArcA; transcriptional regulator complement(2659969..>2660352) Bordetella avium 197N 6265990 YP_786976.1 CDS BAV2464 NC_010645.1 2660963 2661559 R lipoprotein complement(2660963..2661559) Bordetella avium 197N 6265991 YP_786977.1 CDS modE NC_010645.1 2661655 2662458 D regulator of molybdenum transport genes 2661655..2662458 Bordetella avium 197N 6265992 YP_786978.1 CDS modC NC_010645.1 2662417 2663154 R molybdenum ABC transporter ATP-binding protein complement(2662417..2663154) Bordetella avium 197N 6267374 YP_786979.1 CDS modB NC_010645.1 2663151 2663825 R molybdenum ABC transporter permease complement(2663151..2663825) Bordetella avium 197N 6267373 YP_786980.1 CDS modA NC_010645.1 2663836 2664591 R molybdenum ABC transporter molybdate-binding periplasmic protein complement(2663836..2664591) Bordetella avium 197N 6267372 YP_786981.1 CDS BAV2469 NC_010645.1 2664696 2665490 R ABC transporter ATP-binding protein complement(2664696..2665490) Bordetella avium 197N 6267371 YP_786982.1 CDS BAV2470 NC_010645.1 2665492 2666382 R ABC transporter permease complement(2665492..2666382) Bordetella avium 197N 6265993 YP_786983.1 CDS BAV2471 NC_010645.1 2666464 2667432 R hypothetical protein complement(2666464..2667432) Bordetella avium 197N 6265994 YP_786984.1 CDS BAV2472 NC_010645.1 2667750 2668517 D hypothetical protein 2667750..2668517 Bordetella avium 197N 6265995 YP_786985.1 CDS sodC NC_010645.1 2668351 2668875 R superoxide dismutase complement(2668351..2668875) Bordetella avium 197N 6265996 YP_786986.1 CDS BAV2474 NC_010645.1 2669000 2669770 R hypothetical protein complement(2669000..2669770) Bordetella avium 197N 6267763 YP_786987.1 CDS BAV2475 NC_010645.1 2669808 2671388 D acylase 2669808..2671388 Bordetella avium 197N 6265997 YP_786988.1 CDS BAV2476 NC_010645.1 2671400 2672581 R catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase complement(2671400..2672581) Bordetella avium 197N 6265998 YP_786989.1 CDS BAV2477 NC_010645.1 2672713 2673207 R acetyltransferase complement(2672713..2673207) Bordetella avium 197N 6265999 YP_786990.1 CDS proV NC_010645.1 2673403 2674641 R glycine betaine/L-proline ABC transporter ATP-binding protein complement(2673403..2674641) Bordetella avium 197N 6266000 YP_786991.1 CDS proW NC_010645.1 2674638 2675495 R glycine betaine/L-proline ABC transporter permease complement(2674638..2675495) Bordetella avium 197N 6267578 YP_786992.1 CDS proX NC_010645.1 2675580 2676575 R glycine betaine/L-proline ABC transporter substrate-binding periplasmic protein complement(2675580..2676575) Bordetella avium 197N 6267579 YP_786993.1 CDS BAV2481 NC_010645.1 2676761 2676868 R Doubtful CDS.; hypothetical protein complement(2676761..2676868) Bordetella avium 197N 6267580 YP_786994.1 CDS BAV2482 NC_010645.1 2676970 2677260 R hypothetical protein complement(2676970..2677260) Bordetella avium 197N 6266001 YP_786995.1 CDS BAV2483 NC_010645.1 2677364 2678632 R cyclopropane-fatty-acyl-phospholipid synthase complement(2677364..2678632) Bordetella avium 197N 6266002 YP_786996.1 CDS bcr NC_010645.1 2678844 2680010 D bicyclomycin resistance protein ( transporter) 2678844..2680010 Bordetella avium 197N 6266003 YP_786997.1 CDS rpmB NC_010645.1 2680313 2680549 D required for 70S ribosome assembly; 50S ribosomal protein L28 2680313..2680549 Bordetella avium 197N 6266690 YP_786998.1 CDS rpmG NC_010645.1 2680627 2680794 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2680627..2680794 Bordetella avium 197N 6267697 YP_786999.1 CDS BAV2487 NC_010645.1 2680947 2682242 D hypothetical protein 2680947..2682242 Bordetella avium 197N 6267702 YP_787000.1 CDS BAV2488 NC_010645.1 2682176 >2683948 R sulfate transporter complement(2682176..>2683948) Bordetella avium 197N 6266004 YP_787001.1 CDS bph2 NC_010645.1 <2684351 2684668 D DNA-binding protein <2684351..2684668 Bordetella avium 197N 6266005 YP_787002.1 CDS BAV2490 NC_010645.1 2684799 2685311 D MarR family transcriptional regulator 2684799..2685311 Bordetella avium 197N 6266725 YP_787003.1 CDS BAV2491 NC_010645.1 2685308 2686498 D transporter 2685308..2686498 Bordetella avium 197N 6266006 YP_787004.1 CDS leuS NC_010645.1 2686574 2689231 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 2686574..2689231 Bordetella avium 197N 6266007 YP_787005.1 CDS BAV2493 NC_010645.1 2689237 2689920 D lipoprotein 2689237..2689920 Bordetella avium 197N 6267293 YP_787006.1 CDS holA NC_010645.1 2689920 2690969 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 2689920..2690969 Bordetella avium 197N 6266008 YP_787007.1 CDS proA NC_010645.1 2690998 2692257 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 2690998..2692257 Bordetella avium 197N 6267189 YP_787008.1 CDS BAV2496 NC_010645.1 2692266 2692655 D . Seems to be unique to the Bordetellae.; membrane protein 2692266..2692655 Bordetella avium 197N 6267575 YP_787009.1 CDS BAV2497 NC_010645.1 2692659 2693183 D acetyltransferase 2692659..2693183 Bordetella avium 197N 6266009 YP_787010.1 CDS BAV2498 NC_010645.1 2693188 >2694579 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(2693188..>2694579) Bordetella avium 197N 6266010 YP_787011.1 CDS BAV2499 NC_010645.1 2694841 2695113 D hypothetical protein 2694841..2695113 Bordetella avium 197N 6266011 YP_787012.1 CDS BAV2500 NC_010645.1 <2695116 2695505 D hypothetical protein <2695116..2695505 Bordetella avium 197N 6266012 YP_787013.1 CDS BAV2501 NC_010645.1 2702065 2703579 R succinyl-CoA:coenzyme a transferase complement(2702065..2703579) Bordetella avium 197N 6267958 YP_787014.1 CDS BAV2502 NC_010645.1 2703813 2704721 D LysR family transcriptional regulator 2703813..2704721 Bordetella avium 197N 6266014 YP_787015.1 CDS BAV2503 NC_010645.1 2704774 2707125 D mechanosensitive protein 2704774..2707125 Bordetella avium 197N 6266015 YP_787016.1 CDS BAV2504 NC_010645.1 2707430 2708200 R membrane protein complement(2707430..2708200) Bordetella avium 197N 6266016 YP_787017.1 CDS eamA NC_010645.1 2708197 2709078 R amino acid metabolite efflux pump complement(2708197..2709078) Bordetella avium 197N 6266017 YP_787018.1 CDS BAV2506 NC_010645.1 <2709237 2709527 D monooxygenase <2709237..2709527 Bordetella avium 197N 6266912 YP_787019.1 CDS BAV2507 NC_010645.1 2709520 >2709879 R hypothetical protein complement(2709520..>2709879) Bordetella avium 197N 6266018 YP_787020.1 CDS BAV2508 NC_010645.1 2709884 2710465 R exonuclease complement(2709884..2710465) Bordetella avium 197N 6266019 YP_787021.1 CDS acnB NC_010645.1 2710627 2713218 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 2710627..2713218 Bordetella avium 197N 6266020 YP_787022.1 CDS cbbbC NC_010645.1 2713286 2715547 R molybdopterin-containing oxidoreductase complement(2713286..2715547) Bordetella avium 197N 6266587 YP_787023.1 CDS BAV2511 NC_010645.1 2715693 2716343 D membrane protein 2715693..2716343 Bordetella avium 197N 6266762 YP_787024.1 CDS bfrB NC_010645.1 2716392 2718572 R ferric siderophore receptor complement(2716392..2718572) Bordetella avium 197N 6266021 YP_787025.1 CDS acnA3 NC_010645.1 2719698 2722403 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2719698..2722403 Bordetella avium 197N 6266022 YP_787026.1 CDS BAV2515 NC_010645.1 2722493 2723269 R 4,5-dopa dioxygenase extradiol complement(2722493..2723269) Bordetella avium 197N 6266585 YP_787027.1 CDS BAV2516 NC_010645.1 2723434 2724627 D hypothetical protein 2723434..2724627 Bordetella avium 197N 6266023 YP_787028.1 CDS BAV2517 NC_010645.1 2724635 2725711 D hypothetical protein 2724635..2725711 Bordetella avium 197N 6266024 YP_787029.1 CDS efp NC_010645.1 2725854 2726411 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2725854..2726411 Bordetella avium 197N 6266025 YP_787030.1 CDS BAV2519 NC_010645.1 2726679 2727413 D short-chain dehydrogenase/reductase 2726679..2727413 Bordetella avium 197N 6266919 YP_787031.1 CDS BAV2520 NC_010645.1 2727498 2728532 R outer membrane porin protein complement(2727498..2728532) Bordetella avium 197N 6266026 YP_787032.1 CDS BAV2521 NC_010645.1 2728657 2729823 R sugar efflux transporter complement(2728657..2729823) Bordetella avium 197N 6266027 YP_787033.1 CDS BAV2523 NC_010645.1 2730909 2731337 R hypothetical protein complement(2730909..2731337) Bordetella avium 197N 6266029 YP_787034.1 CDS BAV2524 NC_010645.1 2731434 2732126 R hypothetical protein complement(2731434..2732126) Bordetella avium 197N 6266030 YP_787035.1 CDS BAV2525b NC_010645.1 2732228 2732485 R Partial CDS. Similar to an internal region of the Bordetellae response regulators BB1834/BPP2384/BP2004.; sigma-54 interacting transcription regulator (partial) complement(join(2732228..2732485,2732487..>2732540)) Bordetella avium 197N 6266031 YP_787036.1 CDS BAV2525A NC_010645.1 2732653 2733004 R Partial CDS. Similar to the N-terminal region of the Bordetellae exported protein BB1833/BPP2383/BP2003.; hypothetical protein complement(join(2732653..2732658,2732660..2733004)) Bordetella avium 197N 6266032 YP_787037.1 CDS BAV2526 NC_010645.1 2733031 >2733378 R hypothetical protein complement(2733031..>2733378) Bordetella avium 197N 6266033 YP_787038.1 CDS BAV2527 NC_010645.1 2733442 >2733954 R Partial CDS. Similar to the Bordetellae lipoprotein BB1831/BPP2381/BP2001.; lipoprotein (partial) complement(2733442..>2733954) Bordetella avium 197N 6266035 YP_787039.1 CDS BAV2528 NC_010645.1 2734183 2735100 R type IV pilus assembly protein complement(2734183..2735100) Bordetella avium 197N 6266036 YP_787040.1 CDS BAV2531 NC_010645.1 2736479 >2737810 R hypothetical protein complement(2736479..>2737810) Bordetella avium 197N 6266039 YP_787041.1 CDS BAV2532 NC_010645.1 2737807 >2738160 R type IV pilus assembly protein (partial) complement(2737807..>2738160) Bordetella avium 197N 6266040 YP_787042.1 CDS BAV2533 NC_010645.1 2738157 2738663 R type 4 prepilin leader peptidase complement(2738157..2738663) Bordetella avium 197N 6266041 YP_787043.1 CDS BAV2534 NC_010645.1 2738762 2738977 R pilin subunit complement(2738762..2738977) Bordetella avium 197N 6266042 YP_787044.1 CDS BAV2535 NC_010645.1 2739110 >2739910 R signaling protein complement(2739110..>2739910) Bordetella avium 197N 6266043 YP_787045.1 CDS BAV2536 NC_010645.1 2740357 2741316 D Partial CDS. truncated at N-terminus; hypothetical protein 2740357..2741316 Bordetella avium 197N 6266044 YP_787046.1 CDS BAV2538 NC_010645.1 2742849 2743385 D MarR family transcriptional regulator 2742849..2743385 Bordetella avium 197N 6266046 YP_787047.1 CDS BAV2539 NC_010645.1 2743434 2745077 R ABC transporter ATP-binding protein complement(2743434..2745077) Bordetella avium 197N 6266047 YP_787048.1 CDS BAV2540 NC_010645.1 2745074 2746513 R ABC transporter permease complement(2745074..2746513) Bordetella avium 197N 6266048 YP_787049.1 CDS BAV2541 NC_010645.1 2746519 2747496 R ABC transporter permease complement(2746519..2747496) Bordetella avium 197N 6266049 YP_787050.1 CDS BAV2542 NC_010645.1 2747489 2749726 R ABC transporter substrate-binding protein complement(2747489..2749726) Bordetella avium 197N 6266050 YP_787051.1 CDS BAV2543 NC_010645.1 2749803 2750351 R nuclease complement(2749803..2750351) Bordetella avium 197N 6266051 YP_787052.1 CDS BAV2544 NC_010645.1 2750382 2751380 R magnesium transporter complement(2750382..2751380) Bordetella avium 197N 6266052 YP_787053.1 CDS BAV2545 NC_010645.1 2751436 2753493 R DNA helicase complement(2751436..2753493) Bordetella avium 197N 6266053 YP_787054.1 CDS BAV2546 NC_010645.1 2753538 2754446 D hypothetical protein 2753538..2754446 Bordetella avium 197N 6266054 YP_787055.1 CDS BAV2547 NC_010645.1 2754421 2755851 R GntR family transcriptional regulator complement(2754421..2755851) Bordetella avium 197N 6266055 YP_787056.1 CDS goaG2 NC_010645.1 2756050 2757315 D Also similar to BAV2199, (67.952 38d.); 4-aminobutyrate aminotransferase 2756050..2757315 Bordetella avium 197N 6266056 YP_787057.1 CDS gabD NC_010645.1 2757391 2758848 D succinate-semialdehyde dehydrogenase (NADP+) 2757391..2758848 Bordetella avium 197N 6267107 YP_787058.1 CDS suhB1 NC_010645.1 2758965 2759831 D Also similar to BAV2568 (31.818 38d.) and BAV2857 (27.413 38d.).; inositol-1-monophosphatase 2758965..2759831 Bordetella avium 197N 6267049 YP_787059.1 CDS cobB NC_010645.1 2759828 2760646 R Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase complement(2759828..2760646) Bordetella avium 197N 6267780 YP_787060.1 CDS srpH NC_010645.1 2760662 2761606 R serine acetyltransferase complement(2760662..2761606) Bordetella avium 197N 6266800 YP_787061.1 CDS phbB NC_010645.1 <2762056 2764440 D ; Similar to N-terminal half of Escherichia coli 3-hydroxybutyryl-coa dehydrogenase paaH SWALL:PAAH_ECOLI (SWALL:P76083) (475 aa) fasta scores: E(): 5.4e-15, 30.79 38d in 328 aa; acetoacetyl-CoA reductase <2762056..2764440 Bordetella avium 197N 6267771 YP_787062.1 CDS BAV2554 NC_010645.1 2764450 2765643 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2764450..2765643 Bordetella avium 197N 6267520 YP_787063.1 CDS BAV2555 NC_010645.1 <2765707 2766297 D hypothetical protein <2765707..2766297 Bordetella avium 197N 6266057 YP_787064.1 CDS morB NC_010645.1 2766511 2767629 R morphinone reductase complement(2766511..2767629) Bordetella avium 197N 6267839 YP_787065.1 CDS BAV2557 NC_010645.1 2767654 2767962 R ArsR family transcriptional regulator complement(2767654..2767962) Bordetella avium 197N 6267376 YP_787066.1 CDS ask NC_010645.1 2768935 2770194 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(2768935..2770194) Bordetella avium 197N 6267881 YP_787067.1 CDS mesJ NC_010645.1 2770287 2771312 R tRNAIle-lysidine synthetase ( cell cycle protein) complement(2770287..2771312) Bordetella avium 197N 6266668 YP_787068.1 CDS accA NC_010645.1 2771331 2772296 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(2771331..2772296) Bordetella avium 197N 6267333 YP_787069.1 CDS aidA NC_010645.1 2772333 2772977 R DNA-3-methyladenine glycosylase complement(2772333..2772977) Bordetella avium 197N 6266573 YP_787070.1 CDS cysS NC_010645.1 2772991 2774442 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(2772991..2774442) Bordetella avium 197N 6266609 YP_787071.1 CDS BAV2563 NC_010645.1 <2774645 2775331 D hypothetical protein <2774645..2775331 Bordetella avium 197N 6266845 YP_787072.1 CDS ppiB NC_010645.1 2775463 2775969 D peptidyl-prolyl cis-trans isomerase B 2775463..2775969 Bordetella avium 197N 6266060 YP_787073.1 CDS lpxH NC_010645.1 2775962 2776732 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 2775962..2776732 Bordetella avium 197N 6267560 YP_787074.1 CDS bacA NC_010645.1 2776839 >2777687 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(2776839..>2777687) Bordetella avium 197N 6267313 YP_787075.1 CDS BAV2567 NC_010645.1 2777715 2779301 R membrane protein complement(2777715..2779301) Bordetella avium 197N 6266687 YP_787076.1 CDS suhB2 NC_010645.1 2779462 2780241 R Also similar to BAV2550 (31.818 38d.) and BAV2857 (38.519 38d.).; inositol-1-monophosphatase complement(2779462..2780241) Bordetella avium 197N 6266061 YP_787077.1 CDS lasT NC_010645.1 2780387 2781190 D tRNA/rRNA methyltransferase 2780387..2781190 Bordetella avium 197N 6267781 YP_787078.1 CDS BAV2570 NC_010645.1 2781279 2781689 D hypothetical protein 2781279..2781689 Bordetella avium 197N 6267279 YP_787080.1 CDS BAV2574 NC_010645.1 2783704 2784459 D IclR family transcriptional regulator 2783704..2784459 Bordetella avium 197N 6266065 YP_787081.1 CDS BAV2575 NC_010645.1 2784470 2785303 R membrane protein complement(2784470..2785303) Bordetella avium 197N 6266066 YP_787082.1 CDS BAV2577 NC_010645.1 2786441 2787499 R hypothetical protein complement(2786441..2787499) Bordetella avium 197N 6266068 YP_787083.1 CDS BAV2578 NC_010645.1 2787496 >2788989 R hypothetical protein complement(2787496..>2788989) Bordetella avium 197N 6266069 YP_787084.1 CDS BAV2579 NC_010645.1 2788986 2790278 R hypothetical protein complement(2788986..2790278) Bordetella avium 197N 6266070 YP_787085.1 CDS BAV2580 NC_010645.1 2790591 2791592 D ABC transporter substrate binding protein 2790591..2791592 Bordetella avium 197N 6266071 YP_787086.1 CDS BAV2581 NC_010645.1 2791596 2792372 D ABC transporter permease 2791596..2792372 Bordetella avium 197N 6266072 YP_787087.1 CDS BAV2582 NC_010645.1 2792369 2793190 D ABC transporter ATP-binding protein 2792369..2793190 Bordetella avium 197N 6266073 YP_787088.1 CDS BAV2583 NC_010645.1 2793187 2793363 D hypothetical protein 2793187..2793363 Bordetella avium 197N 6266074 YP_787089.1 CDS BAV2584 NC_010645.1 2793360 2794739 D amidase 2793360..2794739 Bordetella avium 197N 6266075 YP_787090.1 CDS BAV2585 NC_010645.1 <2794736 2795455 D GntR family transcriptional regulator <2794736..2795455 Bordetella avium 197N 6266076 YP_787091.1 CDS BAV2586 NC_010645.1 2795507 2796073 R membrane protein complement(2795507..2796073) Bordetella avium 197N 6266077 YP_787092.1 CDS BAV2587 NC_010645.1 2796276 2796656 D hypothetical protein 2796276..2796656 Bordetella avium 197N 6266078 YP_787093.1 CDS BAV2588 NC_010645.1 2796725 2797276 D chromate reductase 2796725..2797276 Bordetella avium 197N 6266079 YP_787094.1 CDS BAV2589 NC_010645.1 2797473 >2797634 R ; Doubtful CDS.; hypothetical protein complement(2797473..>2797634) Bordetella avium 197N 6266080 YP_787095.1 CDS mutS NC_010645.1 2798612 2801239 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 2798612..2801239 Bordetella avium 197N 6266081 YP_787096.1 CDS BAV2591 NC_010645.1 2801236 2802423 D hypothetical protein 2801236..2802423 Bordetella avium 197N 6267406 YP_787097.1 CDS BAV2592 NC_010645.1 2802507 2802695 R hypothetical protein complement(2802507..2802695) Bordetella avium 197N 6266082 YP_787098.1 CDS BAV2593 NC_010645.1 2802911 2804029 R lipoprotein complement(2802911..2804029) Bordetella avium 197N 6266083 YP_787099.1 CDS dapA2 NC_010645.1 2804046 2804951 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2804046..2804951) Bordetella avium 197N 6266084 YP_787100.1 CDS BAV2595 NC_010645.1 2805031 2805711 R membrane-associated peptidase complement(2805031..2805711) Bordetella avium 197N 6266854 YP_787101.1 CDS BAV2596 NC_010645.1 2805762 2806388 R hypothetical protein complement(2805762..2806388) Bordetella avium 197N 6266085 YP_787102.1 CDS BAV2598 NC_010645.1 2807536 2808099 D . Seems to be unique to the bordetellae.; hypothetical protein 2807536..2808099 Bordetella avium 197N 6266087 YP_787103.1 CDS BAV2599 NC_010645.1 2808096 2808860 D hypothetical protein 2808096..2808860 Bordetella avium 197N 6266088 YP_787104.1 CDS BAV2600 NC_010645.1 2808871 2809164 R . Seems to be unique to the bordetellae; hypothetical protein complement(2808871..2809164) Bordetella avium 197N 6266089 YP_787105.1 CDS BAV2603 NC_010645.1 2810185 2810514 R carboxymuconolactone decarboxylase complement(2810185..2810514) Bordetella avium 197N 6266092 YP_787106.1 CDS BAV2604 NC_010645.1 2810659 2811624 D AraC family transcriptional regulator 2810659..2811624 Bordetella avium 197N 6266093 YP_787107.1 CDS cls NC_010645.1 2811909 2813369 D cardiolipin synthetase 2811909..2813369 Bordetella avium 197N 6267860 YP_787108.1 CDS BAV2606 NC_010645.1 2813432 >2813545 R hypothetical protein complement(2813432..>2813545) Bordetella avium 197N 6266795 YP_787109.1 CDS BAV2607 NC_010645.1 2813629 2814768 R subtilisin-like protease complement(2813629..2814768) Bordetella avium 197N 6266095 YP_787110.1 CDS BAV2608 NC_010645.1 2815389 2816675 D phospholipase 2815389..2816675 Bordetella avium 197N 6267845 YP_787111.1 CDS BAV2609 NC_010645.1 2816761 2817324 D hypothetical protein 2816761..2817324 Bordetella avium 197N 6266097 YP_787112.1 CDS BAV2610 NC_010645.1 2817511 2819061 R ABC transporter substrate-binding protein complement(2817511..2819061) Bordetella avium 197N 6266098 YP_787113.1 CDS BAV2611 NC_010645.1 2819176 2819838 R GntR family transcriptional regulator complement(2819176..2819838) Bordetella avium 197N 6266099 YP_787114.1 CDS BAV2612 NC_010645.1 2819873 2821528 R ABC transporter ATP-binding protein complement(2819873..2821528) Bordetella avium 197N 6266100 YP_787115.1 CDS BAV2613 NC_010645.1 2821525 2822346 R ABC transporter permease complement(2821525..2822346) Bordetella avium 197N 6266101 YP_787116.1 CDS BAV2614 NC_010645.1 2822343 2823287 R ABC transporter permease complement(2822343..2823287) Bordetella avium 197N 6266102 YP_787117.1 CDS BAV2615 NC_010645.1 2823322 2824188 R poly(aspartic acid) hydrolase complement(2823322..2824188) Bordetella avium 197N 6266103 YP_787118.1 CDS BAV2616 NC_010645.1 2824360 2824848 R AsnC/Lrp family transcriptional regulator complement(2824360..2824848) Bordetella avium 197N 6266104 YP_787119.1 CDS BAV2617 NC_010645.1 2824890 2826257 R Partially similar to Salmonella typhimurium alanine racemase, catabolic DadX SWALL:ALR2_SALTY (SWALL:P06191) (356 aa).; membrane protein complement(2824890..2826257) Bordetella avium 197N 6266105 YP_787120.1 CDS hdeA NC_010645.1 2827668 2827964 D Also similar to BAV2796 (59.1 38d); acid-resistance protein 2827668..2827964 Bordetella avium 197N 6266108 YP_787121.1 CDS wssI NC_010645.1 2829488 2830657 R cellulose acetylase subunit complement(2829488..2830657) Bordetella avium 197N 6266109 YP_787122.1 CDS wssH NC_010645.1 2830669 2832078 R cellulose acetylase subunit complement(2830669..2832078) Bordetella avium 197N 6267942 YP_787123.1 CDS wssG NC_010645.1 2832154 2832822 R cellulose acetylase subunit complement(2832154..2832822) Bordetella avium 197N 6267941 YP_787124.1 CDS wssF NC_010645.1 2832838 2833503 R cellulose biosynthesis protein complement(2832838..2833503) Bordetella avium 197N 6267940 YP_787125.1 CDS bscS NC_010645.1 2833534 2837505 R cellulose synthase protein C complement(2833534..2837505) Bordetella avium 197N 6267939 YP_787126.1 CDS bcsZ NC_010645.1 2837502 2838698 R catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase complement(2837502..2838698) Bordetella avium 197N 6266742 YP_787127.1 CDS bcsB2 NC_010645.1 2838695 2840989 R binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein complement(2838695..2840989) Bordetella avium 197N 6266694 YP_787128.1 CDS bcsB2 NC_010645.1 2840992 2843253 R binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein complement(2840992..2843253) Bordetella avium 197N 6266692 YP_787129.1 CDS bcsA NC_010645.1 2843250 2845451 R cellulose synthase catalytic subunit complement(2843250..2845451) Bordetella avium 197N 6266693 YP_787130.1 CDS wssA NC_010645.1 2845448 2846215 R cellulose biosynthesis protein complement(2845448..2846215) Bordetella avium 197N 6266691 YP_787131.1 CDS BAV2633 NC_010645.1 2846212 2846964 R cellulose biosynthesis protein complement(2846212..2846964) Bordetella avium 197N 6267938 YP_787132.1 CDS acsD NC_010645.1 2847004 >2847465 R cellulose synthase biosynthesis protein complement(2847004..>2847465) Bordetella avium 197N 6266110 YP_787133.1 CDS algA NC_010645.1 2848061 2849479 D capsular polysaccharide biosynthesis mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase 2848061..2849479 Bordetella avium 197N 6266594 YP_787134.1 CDS BAV2636 NC_010645.1 2849487 2850902 D capsular polysaccharide biosynthesis glucosyltransferase 2849487..2850902 Bordetella avium 197N 6266613 YP_787135.1 CDS BAV2637 NC_010645.1 2850913 >2852193 R ; Weakly similar to the C-terminal region of enterics sucrose operon repressor ScrR SWALL:SCRR_SALTY (SWALL:P37077) (334 aa) fasta scores: E(): 3.1, 30.5 38d in 177 aa; capsular polysaccharide biosynthesis protein complement(2850913..>2852193) Bordetella avium 197N 6266111 YP_787136.1 CDS BAV2638 NC_010645.1 2852190 2853005 R capsular polysaccharide biosynthesis glucosyltransferase complement(2852190..2853005) Bordetella avium 197N 6266112 YP_787137.1 CDS BAV2639 NC_010645.1 <2853193 2854287 D capsular polysaccharide export protein <2853193..2854287 Bordetella avium 197N 6266113 YP_787138.1 CDS BAV2640 NC_010645.1 2854329 2855090 D capsular polysaccharide biosynthesis protein 2854329..2855090 Bordetella avium 197N 6266114 YP_787139.1 CDS BAV2641 NC_010645.1 2855106 2856779 D capsular polysaccharide biosynthesis oxidoreductase 2855106..2856779 Bordetella avium 197N 6266115 YP_787140.1 CDS BAV2642 NC_010645.1 2856776 2857714 D capsular polysaccharide biosynthesis protein 2856776..2857714 Bordetella avium 197N 6266116 YP_787141.1 CDS BAV2643 NC_010645.1 2857711 2858748 D capsular polysaccharide biosynthesis protein 2857711..2858748 Bordetella avium 197N 6266117 YP_787142.1 CDS BAV2644 NC_010645.1 2858720 >2859787 R capsular polysaccharide biosynthesis O-acetyl transferase complement(2858720..>2859787) Bordetella avium 197N 6266118 YP_787143.1 CDS BAV2645 NC_010645.1 2859806 2861062 R capsular polysaccharide biosynthesis protein complement(2859806..2861062) Bordetella avium 197N 6266119 YP_787144.1 CDS BAV2646 NC_010645.1 2861059 2862252 R capsular polysaccharide biosynthesis glycosyl transferase complement(2861059..2862252) Bordetella avium 197N 6266120 YP_787145.1 CDS BAV2647 NC_010645.1 2862260 2863192 R capsular polysaccharide biosynthesis glycosyl transferase complement(2862260..2863192) Bordetella avium 197N 6266121 YP_787146.1 CDS BAV2648 NC_010645.1 2863189 2865462 R capsular polysaccharide biosynthesis protein complement(2863189..2865462) Bordetella avium 197N 6266122 YP_787147.1 CDS BAV2649 NC_010645.1 2865459 >2866757 R capsular polysaccharide biosynthesis protein complement(2865459..>2866757) Bordetella avium 197N 6266123 YP_787148.1 CDS BAV2650 NC_010645.1 2866754 2867830 R capsular polysaccharide biosynthesis protein complement(2866754..2867830) Bordetella avium 197N 6266124 YP_787149.1 CDS BAV2651 NC_010645.1 2867827 >2869212 R ; Similar to N-terminus of many polysaccharide biosynthesis proteins; capsular polysaccharide biosynthesis protein complement(2867827..>2869212) Bordetella avium 197N 6266125 YP_787150.1 CDS BAV2652 NC_010645.1 2869548 2870687 R capsular polysaccharide biosynthesis acyltransferase; acetyltransferase complement(2869548..2870687) Bordetella avium 197N 6266126 YP_787151.1 CDS BAV2653 NC_010645.1 2870672 2871040 R capsular polysaccharide biosynthesis protein complement(2870672..2871040) Bordetella avium 197N 6266127 YP_787152.1 CDS BAV2654 NC_010645.1 2871784 2872542 R iron ABC transporter ATP-binding protein complement(2871784..2872542) Bordetella avium 197N 6267868 YP_787153.1 CDS BAV2655 NC_010645.1 2872539 2873495 R iron ABC transporter permease complement(2872539..2873495) Bordetella avium 197N 6266129 YP_787154.1 CDS BAV2656 NC_010645.1 2873488 >2874486 R iron ABC transporter permease complement(2873488..>2874486) Bordetella avium 197N 6266130 YP_787155.1 CDS BAV2657 NC_010645.1 2874487 2875404 R iron ABC transporter substrate-binding protein complement(2874487..2875404) Bordetella avium 197N 6266131 YP_787156.1 CDS secG NC_010645.1 2875645 2876073 R preprotein translocase subunit SecG complement(2875645..2876073) Bordetella avium 197N 6266132 YP_787157.1 CDS tpiA NC_010645.1 2876095 2876844 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(2876095..2876844) Bordetella avium 197N 6267750 YP_787158.1 CDS BAV2660 NC_010645.1 2876978 2877952 R zinc-binding dehydrogenase complement(2876978..2877952) Bordetella avium 197N 6267822 YP_787159.1 CDS BAV2661 NC_010645.1 2878795 2879466 D One of 11 fimbrial subunits; fimbrial subunit 2878795..2879466 Bordetella avium 197N 6267883 YP_787160.1 CDS BAV2661A NC_010645.1 2879494 2879685 D Doubtful CDS.; hypothetical protein 2879494..2879685 Bordetella avium 197N 6266134 YP_787161.1 CDS BAV2662 NC_010645.1 2879701 2879853 D hypothetical protein 2879701..2879853 Bordetella avium 197N 6266135 YP_787162.1 CDS BAV2663 NC_010645.1 2880213 2880797 D hypothetical protein 2880213..2880797 Bordetella avium 197N 6266136 YP_787163.1 CDS tdcB NC_010645.1 2880791 2882008 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(2880791..2882008) Bordetella avium 197N 6266137 YP_787164.1 CDS BAV2665 NC_010645.1 2882020 2882733 R lipoprotein complement(2882020..2882733) Bordetella avium 197N 6267793 YP_787165.1 CDS BAV2666 NC_010645.1 2883094 2884422 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2883094..2884422 Bordetella avium 197N 6266138 YP_787166.1 CDS pnp NC_010645.1 2884562 2886718 R polynucleotide phosphorylase/polyadenylase complement(2884562..2886718) Bordetella avium 197N 6266139 YP_787167.1 CDS rpsO NC_010645.1 2886808 2887077 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(2886808..2887077) Bordetella avium 197N 6267549 YP_787168.1 CDS BAV2669 NC_010645.1 2887323 2887841 D hypothetical protein 2887323..2887841 Bordetella avium 197N 6267722 YP_787169.1 CDS pssA NC_010645.1 2887890 2888657 R CDP-diacylglycerol--serine O-phosphatidyltransferase complement(2887890..2888657) Bordetella avium 197N 6266140 YP_787170.1 CDS ilvC NC_010645.1 2888827 2889843 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(2888827..2889843) Bordetella avium 197N 6267587 YP_787171.1 CDS ilvH NC_010645.1 2889908 2890399 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(2889908..2890399) Bordetella avium 197N 6267236 YP_787172.1 CDS ilvI1 NC_010645.1 2890410 2892125 R Also similar to BAV3387 (46.528 38d); acetolactate synthase isozyme III large subunit complement(2890410..2892125) Bordetella avium 197N 6266741 YP_787173.1 CDS BAV2674 NC_010645.1 2892619 2894826 D membrane protein 2892619..2894826 Bordetella avium 197N 6267241 YP_787174.1 CDS BAV2675 NC_010645.1 2895020 2895793 R hypothetical protein complement(2895020..2895793) Bordetella avium 197N 6266141 YP_787175.1 CDS hbdH NC_010645.1 2895813 2896595 R D-beta-hydroxybutyrate dehydrogenase complement(2895813..2896595) Bordetella avium 197N 6266142 YP_787176.1 CDS BAV2677 NC_010645.1 2897158 2897685 R detoxifying sulfurtransferase complement(2897158..2897685) Bordetella avium 197N 6267880 YP_787177.1 CDS BAV2678 NC_010645.1 2897708 2898019 R ArsR family transcriptional regulator complement(2897708..2898019) Bordetella avium 197N 6266143 YP_787178.1 CDS BAV2679 NC_010645.1 2898125 2899180 R hypothetical protein complement(2898125..2899180) Bordetella avium 197N 6266144 YP_787179.1 CDS BAV2680 NC_010645.1 <2899331 2899525 D ; Doubtful CDS.; hypothetical protein <2899331..2899525 Bordetella avium 197N 6266145 YP_787180.1 CDS BAV2681 NC_010645.1 2899832 2900449 D signaling protein 2899832..2900449 Bordetella avium 197N 6266146 YP_787181.1 CDS BAV2682 NC_010645.1 2900472 2900621 R . Seems to be unique to the bordetellae.; hypothetical protein complement(2900472..2900621) Bordetella avium 197N 6266147 YP_787182.1 CDS vrg-6 NC_010645.1 2900948 2901268 D Virulence protein 2900948..2901268 Bordetella avium 197N 6266148 YP_787183.1 CDS BAV2684 NC_010645.1 2901459 2901707 R . Seems to be unique to the bordetellae.; hypothetical protein complement(2901459..2901707) Bordetella avium 197N 6267930 YP_787184.1 CDS serS NC_010645.1 2902138 2903487 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2902138..2903487) Bordetella avium 197N 6266149 YP_787185.1 CDS arcD1 NC_010645.1 2904204 2905670 D Also similar to BAV2688 (55.511 38d).; arginine/ornithine antiporter 2904204..2905670 Bordetella avium 197N 6267755 YP_787186.1 CDS adiA NC_010645.1 2905720 2908098 D biodegradative arginine decarboxylase 2905720..2908098 Bordetella avium 197N 6266639 YP_787187.1 CDS arcD2 NC_010645.1 <2908117 2909670 D Also similar to BAV2686 (55.511 38d).; arginine/ornithine antiporter <2908117..2909670 Bordetella avium 197N 6266604 YP_787188.1 CDS BAV2689 NC_010645.1 2909839 2910081 D Partial CDS. Similar to the C-terminal region of many transposases.; transposase (partial) 2909839..2910081 Bordetella avium 197N 6266640 YP_787189.1 CDS BAV2690 NC_010645.1 2910624 2910764 D hypothetical protein 2910624..2910764 Bordetella avium 197N 6266150 YP_787190.1 CDS BAV2692 NC_010645.1 2912380 2913759 R recombination factor protein RarA complement(2912380..2913759) Bordetella avium 197N 6266152 YP_787191.1 CDS dsd NC_010645.1 2913851 2915110 D D-serine deaminase 2913851..2915110 Bordetella avium 197N 6266153 YP_787192.1 CDS lolA NC_010645.1 2915390 2916019 R participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein complement(2915390..2916019) Bordetella avium 197N 6266907 YP_787193.1 CDS ftsK NC_010645.1 2916019 2918376 R DNA translocase complement(2916019..2918376) Bordetella avium 197N 6267303 YP_787194.1 CDS trxB NC_010645.1 2918418 2919371 D thioredoxin reductase 2918418..2919371 Bordetella avium 197N 6267038 YP_787195.1 CDS BAV2697 NC_010645.1 2919358 2920026 D hypothetical protein 2919358..2920026 Bordetella avium 197N 6267900 YP_787196.1 CDS qacH NC_010645.1 2920023 2920352 D quaternary ammonium compound-resistance protein 2920023..2920352 Bordetella avium 197N 6266154 YP_787197.1 CDS BAV2699 NC_010645.1 2920357 2922423 R sodium/solute symporter complement(2920357..2922423) Bordetella avium 197N 6267617 YP_787198.1 CDS BAV2700 NC_010645.1 2922423 2922668 R membrane protein complement(2922423..2922668) Bordetella avium 197N 6266155 YP_787199.1 CDS kdpA NC_010645.1 2923366 2925150 D potassium-transporting ATPase A chain 2923366..2925150 Bordetella avium 197N 6266156 YP_787200.1 CDS kdpB NC_010645.1 2925170 2927305 D potassium-transporting ATPase B chain 2925170..2927305 Bordetella avium 197N 6267264 YP_787201.1 CDS kdpC NC_010645.1 2927324 2927908 D potassium-transporting ATPase C chain 2927324..2927908 Bordetella avium 197N 6267265 YP_787202.1 CDS kdpD NC_010645.1 <2927924 2930692 D two component sensor kinase <2927924..2930692 Bordetella avium 197N 6267266 YP_787203.1 CDS kdpE NC_010645.1 2930698 2931390 D two component response regulator 2930698..2931390 Bordetella avium 197N 6267267 YP_787204.1 CDS BAV2706 NC_010645.1 2931504 2932247 D hypothetical protein 2931504..2932247 Bordetella avium 197N 6267268 YP_787205.1 CDS BAV2707 NC_010645.1 <2932321 2932572 D transposase (partial) <2932321..2932572 Bordetella avium 197N 6266157 YP_787206.1 CDS dapA3 NC_010645.1 <2932575 2933462 D ; Also similar to BAV0110 (37.847 38d), BAV2594 (30.241 38d); dihydrodipicolinate synthase <2932575..2933462 Bordetella avium 197N 6266158 YP_787207.1 CDS icd NC_010645.1 2933473 2934729 R isocitrate dehydrogenase (NADP) complement(2933473..2934729) Bordetella avium 197N 6266855 YP_787208.1 CDS BAV2710 NC_010645.1 2934888 2935313 D hypothetical protein 2934888..2935313 Bordetella avium 197N 6267230 YP_787209.1 CDS BAV2711 NC_010645.1 2935425 2936291 D ATPase 2935425..2936291 Bordetella avium 197N 6266159 YP_787210.1 CDS BAV2712 NC_010645.1 2936297 2937469 D hypothetical protein 2936297..2937469 Bordetella avium 197N 6266160 YP_787211.1 CDS BAV2713 NC_010645.1 2937479 2937799 R . Seems to be unique to the bordetellae.; hypothetical protein complement(2937479..2937799) Bordetella avium 197N 6266161 YP_787212.1 CDS BAV2714 NC_010645.1 2938084 2940834 D zinc protease 2938084..2940834 Bordetella avium 197N 6266162 YP_787213.1 CDS dnaJ NC_010645.1 2941020 2942141 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(2941020..2942141) Bordetella avium 197N 6266163 YP_787214.1 CDS dnaK NC_010645.1 2942254 2944188 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(2942254..2944188) Bordetella avium 197N 6266892 YP_787215.1 CDS BAV2717 NC_010645.1 2944268 2944642 R thioredoxin complement(2944268..2944642) Bordetella avium 197N 6266893 YP_787216.1 CDS grpE NC_010645.1 2944668 2945204 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(2944668..2945204) Bordetella avium 197N 6266164 YP_787217.1 CDS BAV2719 NC_010645.1 2945322 2945480 R hypothetical protein complement(2945322..2945480) Bordetella avium 197N 6267118 YP_787218.1 CDS hemH NC_010645.1 2945511 >2946605 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(2945511..>2946605) Bordetella avium 197N 6266165 YP_787219.1 CDS hrcA NC_010645.1 2946653 2947657 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(2946653..2947657) Bordetella avium 197N 6267157 YP_787220.1 CDS ppnK NC_010645.1 2947767 2948666 D catalyzes the phosphorylation of NAD to NADP; NAD(+)/NADH kinase family protein 2947767..2948666 Bordetella avium 197N 6267205 YP_787221.1 CDS radB NC_010645.1 2948685 2950337 D DNA repair protein 2948685..2950337 Bordetella avium 197N 6267412 YP_787222.1 CDS fur NC_010645.1 2950391 2950810 R ferric ion uptake regulator complement(2950391..2950810) Bordetella avium 197N 6267620 YP_787223.1 CDS omlA NC_010645.1 2951038 2951568 D outer membrane lipoprotein 2951038..2951568 Bordetella avium 197N 6267047 YP_787224.1 CDS dapB NC_010645.1 2951586 2952377 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 2951586..2952377 Bordetella avium 197N 6267457 YP_787225.1 CDS murB NC_010645.1 2952406 2953422 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(2952406..2953422) Bordetella avium 197N 6266856 YP_787226.1 CDS dsbG NC_010645.1 2954184 2954963 R Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase complement(2954184..2954963) Bordetella avium 197N 6267857 YP_787227.1 CDS ccmG NC_010645.1 2954966 2955784 R thiol:disulfide interchange protein complement(2954966..2955784) Bordetella avium 197N 6266906 YP_787228.1 CDS BAV2730 NC_010645.1 2956014 2956523 R hypothetical protein complement(2956014..2956523) Bordetella avium 197N 6266767 YP_787229.1 CDS BAV2731 NC_010645.1 2956812 2957513 D GntR family transcriptional regulator 2956812..2957513 Bordetella avium 197N 6266166 YP_787230.1 CDS acnA4 NC_010645.1 2957510 2960119 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2957510..2960119 Bordetella avium 197N 6266167 YP_787231.1 CDS BAV2733 NC_010645.1 2960164 2961342 D hypothetical protein 2960164..2961342 Bordetella avium 197N 6266586 YP_787232.1 CDS BAV2734 NC_010645.1 2961424 2962032 D amino acid efflux protein 2961424..2962032 Bordetella avium 197N 6266168 YP_787233.1 CDS BAV2735 NC_010645.1 2962404 2963183 R subunit of carbon monoxide dehydrogenase complement(2962404..2963183) Bordetella avium 197N 6267858 YP_787234.1 CDS cutL NC_010645.1 2963180 2965573 R carbon monoxide dehydrogenase large subunit complement(2963180..2965573) Bordetella avium 197N 6266170 YP_787235.1 CDS coxS NC_010645.1 2965560 2966069 R carbon monoxide dehydrogenase small subunit complement(2965560..2966069) Bordetella avium 197N 6266823 YP_787236.1 CDS coxM NC_010645.1 2966059 2966934 R carbon monoxide dehydrogenase medium chain complement(2966059..2966934) Bordetella avium 197N 6266805 YP_787237.1 CDS BAV2739 NC_010645.1 2966946 2967938 R 4,5-dihydroxyphthalate decarboxylase complement(2966946..2967938) Bordetella avium 197N 6266804 YP_787238.1 CDS BAV2740 NC_010645.1 2967948 2968943 R hypothetical protein complement(2967948..2968943) Bordetella avium 197N 6266171 YP_787239.1 CDS BAV2741 NC_010645.1 2969508 2970134 R isochorismatase family hydrolase complement(2969508..2970134) Bordetella avium 197N 6266172 YP_787240.1 CDS BAV2742 NC_010645.1 2970167 2971198 R hypothetical protein complement(2970167..2971198) Bordetella avium 197N 6266173 YP_787241.1 CDS BAV2743 NC_010645.1 2971202 2972029 R hydrolase complement(2971202..2972029) Bordetella avium 197N 6266174 YP_787242.1 CDS maiA2 NC_010645.1 2972042 2972794 R Also similar to BAV1531 (79.68 38d); maleate cis-trans isomerase complement(2972042..2972794) Bordetella avium 197N 6266175 YP_787243.1 CDS BAV2745 NC_010645.1 2972821 2973783 R decarboxylase complement(2972821..2973783) Bordetella avium 197N 6267327 YP_787244.1 CDS BAV2746 NC_010645.1 2974075 2974608 R MarR family transcriptional regulator complement(2974075..2974608) Bordetella avium 197N 6266176 YP_787245.1 CDS BAV2747 NC_010645.1 2975180 2975728 D hypothetical protein 2975180..2975728 Bordetella avium 197N 6267851 YP_787246.1 CDS BAV2748 NC_010645.1 2975725 2976129 R membrane protein complement(2975725..2976129) Bordetella avium 197N 6266178 YP_787247.1 CDS BAV2749 NC_010645.1 2976265 2977170 D LysR family transcriptional regulator 2976265..2977170 Bordetella avium 197N 6266179 YP_787248.1 CDS BAV2750 NC_010645.1 2977181 2977762 D NUDIX hydrolase 2977181..2977762 Bordetella avium 197N 6266180 YP_787249.1 CDS aat NC_010645.1 2977759 2978511 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2977759..2978511 Bordetella avium 197N 6266181 YP_787250.1 CDS ate NC_010645.1 2978548 2979270 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2978548..2979270 Bordetella avium 197N 6266572 YP_787251.1 CDS pyrD NC_010645.1 2979300 2980349 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2979300..2980349 Bordetella avium 197N 6266676 YP_787252.1 CDS phaP NC_010645.1 2980590 2981168 R granule-associated protein (phasin) complement(2980590..2981168) Bordetella avium 197N 6267611 YP_787253.1 CDS BAV2755 NC_010645.1 2981518 2982495 D hypothetical protein 2981518..2982495 Bordetella avium 197N 6267517 YP_787254.1 CDS BAV2756 NC_010645.1 2982840 2983658 R IclR family transcriptional regulator complement(2982840..2983658) Bordetella avium 197N 6266182 YP_787255.1 CDS BAV2757 NC_010645.1 2983773 2984588 R hypothetical protein complement(2983773..2984588) Bordetella avium 197N 6266183 YP_787256.1 CDS BAV2758 NC_010645.1 2984585 2985382 R membrane protein complement(2984585..2985382) Bordetella avium 197N 6266184 YP_787257.1 CDS BAV2759 NC_010645.1 2985444 2985821 D thioredoxin 2985444..2985821 Bordetella avium 197N 6266185 YP_787258.1 CDS rhlE NC_010645.1 2985829 2987262 R ATP-dependent RNA helicase complement(2985829..2987262) Bordetella avium 197N 6266186 YP_787259.1 CDS BAV2761 NC_010645.1 2987415 2987744 R membrane protein complement(2987415..2987744) Bordetella avium 197N 6267649 YP_787260.1 CDS BAV2762 NC_010645.1 2987744 >2988490 R membrane protein complement(2987744..>2988490) Bordetella avium 197N 6266187 YP_787261.1 CDS BAV2763 NC_010645.1 2988782 2988976 D hypothetical protein 2988782..2988976 Bordetella avium 197N 6266188 YP_787262.1 CDS BAV2764 NC_010645.1 2988999 2989421 D hypothetical protein 2988999..2989421 Bordetella avium 197N 6266189 YP_787263.1 CDS BAV2765 NC_010645.1 2989551 2990648 D hypothetical protein 2989551..2990648 Bordetella avium 197N 6266190 YP_787264.1 CDS BAV2766 NC_010645.1 2990662 2992173 R exported peptidase complement(2990662..2992173) Bordetella avium 197N 6266191 YP_787265.1 CDS gtaB NC_010645.1 2992249 2993088 D UTP--glucose-1-phosphate uridylyltransferase 2992249..2993088 Bordetella avium 197N 6266192 YP_787266.1 CDS mgtA NC_010645.1 2993150 2995924 R Also similar to BAV3245 (27.7 38d).; magnesium transporting ATPase, P-type 1 complement(2993150..2995924) Bordetella avium 197N 6267135 YP_787267.1 CDS BAV2769 NC_010645.1 2996155 2996487 R hypothetical protein complement(2996155..2996487) Bordetella avium 197N 6267349 YP_787268.1 CDS BAV2770 NC_010645.1 2997136 2997711 D TetR family transcriptional regulator 2997136..2997711 Bordetella avium 197N 6266193 YP_787269.1 CDS BAV2771 NC_010645.1 2997702 2998739 R Ca2+/Na+ antiporter complement(2997702..2998739) Bordetella avium 197N 6266194 YP_787270.1 CDS pepP NC_010645.1 2999004 3000347 D Xaa-Pro aminopeptidase 2999004..3000347 Bordetella avium 197N 6266195 YP_787271.1 CDS ubiH NC_010645.1 3000385 3001518 D Also similar to BAV3230 (29.3 38d); hypothetical protein 3000385..3001518 Bordetella avium 197N 6267502 YP_787272.1 CDS dusB NC_010645.1 3001624 3002649 D tRNA-dihydrouridine synthase B 3001624..3002649 Bordetella avium 197N 6267912 YP_787273.1 CDS fis NC_010645.1 3002693 3002932 D DNA-binding protein 3002693..3002932 Bordetella avium 197N 6266909 YP_787274.1 CDS purH NC_010645.1 3002999 3004588 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3002999..3004588 Bordetella avium 197N 6266981 YP_787275.1 CDS ruvC NC_010645.1 3004588 3005133 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 3004588..3005133 Bordetella avium 197N 6267600 YP_787276.1 CDS ruvA NC_010645.1 3005217 3005789 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 3005217..3005789 Bordetella avium 197N 6267740 YP_787277.1 CDS BAV2779 NC_010645.1 3005793 >3006557 R lipoprotein complement(3005793..>3006557) Bordetella avium 197N 6267738 YP_787278.1 CDS ruvB NC_010645.1 3006837 3007910 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 3006837..3007910 Bordetella avium 197N 6266196 YP_787279.1 CDS recQ NC_010645.1 3007926 3009746 R ATP-dependent DNA helicase complement(3007926..3009746) Bordetella avium 197N 6267739 YP_787280.1 CDS BAV2782 NC_010645.1 3009829 3011133 R . Seems to be unique to the bordetellae.; hypothetical protein complement(3009829..3011133) Bordetella avium 197N 6267631 YP_787281.1 CDS ompB NC_010645.1 3011305 3012006 D osmolarity two component response regulator 3011305..3012006 Bordetella avium 197N 6266197 YP_787282.1 CDS envZ NC_010645.1 3012011 3013489 D osmolarity two component sensor kinase 3012011..3013489 Bordetella avium 197N 6267459 YP_787283.1 CDS BAV2785 NC_010645.1 3013501 3014547 R cytochrome oxidase D ubiquinol oxidase,subunit II complement(3013501..3014547) Bordetella avium 197N 6266930 YP_787284.1 CDS BAV2786 NC_010645.1 3014544 3015878 R cytochrome bd ubiquinol oxidase,subunit I complement(3014544..3015878) Bordetella avium 197N 6266198 YP_787285.1 CDS glnS NC_010645.1 3015989 3017749 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 3015989..3017749 Bordetella avium 197N 6266199 YP_787286.1 CDS minC NC_010645.1 3017922 3018758 D blocks the formation of polar Z-ring septums; septum formation inhibitor 3017922..3018758 Bordetella avium 197N 6267090 YP_787287.1 CDS minD NC_010645.1 3018854 3019669 D septum site-determining protein 3018854..3019669 Bordetella avium 197N 6267354 YP_787288.1 CDS minE NC_010645.1 3019673 3019945 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 3019673..3019945 Bordetella avium 197N 6267355 YP_787289.1 CDS osmB NC_010645.1 3020009 3020230 R osmotically inducible lipoprotein complement(3020009..3020230) Bordetella avium 197N 6267356 YP_787290.1 CDS BAV2792 NC_010645.1 3020419 3020946 R isochorismatase hydrolase complement(3020419..3020946) Bordetella avium 197N 6267464 YP_787291.1 CDS BAV2793 NC_010645.1 3020989 3022662 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(3020989..3022662) Bordetella avium 197N 6266200 YP_787292.1 CDS glsA NC_010645.1 3022763 3023701 R catalyzes the formation of glutamate from glutamine; glutaminase complement(3022763..3023701) Bordetella avium 197N 6266201 YP_787293.1 CDS BAV2795 NC_010645.1 3023747 3025222 R glutamate/gamma-aminobutyrate antiporter complement(3023747..3025222) Bordetella avium 197N 6267096 YP_787294.1 CDS hdeB NC_010645.1 3025619 3025972 D Also similar to BAV2620 (59.184 38d); acid-resistance protein 3025619..3025972 Bordetella avium 197N 6266202 YP_787295.1 CDS gadA2 NC_010645.1 3026043 3027443 D Also similar to BAV2621 (80.679 38d); glutamate decarboxylase alpha/beta 3026043..3027443 Bordetella avium 197N 6267149 YP_787296.1 CDS BAV2798 NC_010645.1 3027455 3028342 R membrane protein complement(3027455..3028342) Bordetella avium 197N 6267051 YP_787297.1 CDS BAV2799 NC_010645.1 3028470 3028958 D . Seems to be unique to the bordetellae.; hypothetical protein 3028470..3028958 Bordetella avium 197N 6266203 YP_787298.1 CDS BAV2800 NC_010645.1 3028967 3029962 R ABC transporter ATP-binding protein complement(3028967..3029962) Bordetella avium 197N 6266204 YP_787299.1 CDS BAV2801 NC_010645.1 3029959 3030933 R ABC transporter ATP-binding protein complement(3029959..3030933) Bordetella avium 197N 6266205 YP_787300.1 CDS BAV2802 NC_010645.1 3030941 3031855 R ABC transporter permease complement(3030941..3031855) Bordetella avium 197N 6266206 YP_787301.1 CDS BAV2803 NC_010645.1 3031855 3032844 R ABC transporter permease complement(3031855..3032844) Bordetella avium 197N 6266207 YP_787302.1 CDS BAV2804 NC_010645.1 3032911 3034482 R ABC transporter substrate-binding protein complement(3032911..3034482) Bordetella avium 197N 6266208 YP_787303.1 CDS BAV2805 NC_010645.1 3034730 3035668 R glycosyl transferase complement(3034730..3035668) Bordetella avium 197N 6266209 YP_787304.1 CDS BAV2806 NC_010645.1 3035871 3036806 D LysR family transcriptional regulator 3035871..3036806 Bordetella avium 197N 6266210 YP_787305.1 CDS BAV2807 NC_010645.1 3036931 3037095 R . Seems to be unique to the bordetellae.; hypothetical protein complement(3036931..3037095) Bordetella avium 197N 6266211 YP_787306.1 CDS BAV2808 NC_010645.1 3037588 3043290 D excinuclease ABC subunit 3037588..3043290 Bordetella avium 197N 6266212 YP_787307.1 CDS pabB NC_010645.1 3043296 3044441 D catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; aminodeoxychorismate synthase 3043296..3044441 Bordetella avium 197N 6266213 YP_787308.1 CDS BAV2810 NC_010645.1 3044449 3045081 D hypothetical protein 3044449..3045081 Bordetella avium 197N 6267480 YP_787309.1 CDS BAV2811 NC_010645.1 3045091 3045900 R hypothetical protein complement(3045091..3045900) Bordetella avium 197N 6266214 YP_787310.1 CDS BAV2812 NC_010645.1 3045900 3047264 R multidrug efflux outer membrane lipoprotein complement(3045900..3047264) Bordetella avium 197N 6266215 YP_787311.1 CDS macB NC_010645.1 3047261 >3049228 R macrolide-specific ABC-type efflux carrier complement(3047261..>3049228) Bordetella avium 197N 6266216 YP_787312.1 CDS BAV2816 NC_010645.1 3050553 3051449 R LysR family transcriptional regulator complement(3050553..3051449) Bordetella avium 197N 6266217 YP_787313.1 CDS ggt NC_010645.1 3051550 3053289 D gamma-glutamyltranspeptidase 3051550..3053289 Bordetella avium 197N 6266218 YP_787314.1 CDS hagA2 NC_010645.1 3053302 3054966 R Higly similar to BAV2824, HagA (53.4 38d). Also similar to the bordetellae FhaC; hemolysin/hemagglutin accessory protein complement(3053302..3054966) Bordetella avium 197N 6267067 YP_787315.1 CDS hagB2 NC_010645.1 3055039 3059094 R Nearly identical copy of BAV2825, HagB, (96 38d.); no mutants isolated.; similar to the N-terminal 1050 residues of the bordetellae FhaB; hemolysin/hemagglutin complement(3055039..3059094) Bordetella avium 197N 6267143 YP_787316.1 CDS purU NC_010645.1 3059416 3060270 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(3059416..3060270) Bordetella avium 197N 6267145 YP_787317.1 CDS BAV2821 NC_010645.1 3060299 3061408 R oxidase complement(3060299..3061408) Bordetella avium 197N 6267605 YP_787318.1 CDS BAV2822 NC_010645.1 3061413 3061916 R oxygenase complement(3061413..3061916) Bordetella avium 197N 6266219 YP_787319.1 CDS pdxH NC_010645.1 3061923 3062555 R pyridoxamine 5'-phosphate oxidase complement(3061923..3062555) Bordetella avium 197N 6266220 YP_787320.1 CDS hagA1 NC_010645.1 3062685 3064298 R Virulence locus as shown in labs of L. Temple and P. Orndorff; both hagA and hagB required for virulence and hemagglutination of guinea pig erythrocytes; Also highly similar to BAV2818, HagA2, (53.4 38d); hemolysin/hemagglutin accessory protein complement(3062685..3064298) Bordetella avium 197N 6267496 YP_787321.1 CDS hagB1 NC_010645.1 3064793 3068860 D HagB is essential for virulence as shown in labs of L. Temple and P. Orndorff; both hagA and hagB required for virulence and hemagglutination of guinea pig erythrocytes; Nearly identical copy of 2819, HagB2, (96 38d.); similar to the N-terminal 1050 residues of the bordetellae FhaB; hemolysin/hemagglutin 3064793..3068860 Bordetella avium 197N 6267142 YP_787322.1 CDS BAV2826 NC_010645.1 3068874 >3069524 R ; Also similar to BAV2865 (58.2 38d.); multidrug efflux-associated protein complement(3068874..>3069524) Bordetella avium 197N 6267144 YP_787323.1 CDS BAV2827 NC_010645.1 3069521 >3070735 R multidrug resistance protein complement(3069521..>3070735) Bordetella avium 197N 6266221 YP_787324.1 CDS BAV2828 NC_010645.1 3071028 3071648 R hypothetical protein complement(3071028..3071648) Bordetella avium 197N 6266222 YP_787325.1 CDS BAV2829 NC_010645.1 3071848 3072042 D hypothetical protein 3071848..3072042 Bordetella avium 197N 6266223 YP_787326.1 CDS cysD2 NC_010645.1 3072512 3073801 R Almost identical to BAV0639 (98.8 38d); O-acetylhomoserine sulfhydrylase complement(3072512..3073801) Bordetella avium 197N 6266224 YP_787327.1 CDS BAV2831 NC_010645.1 3074168 3075064 R lipase/esterase complement(3074168..3075064) Bordetella avium 197N 6266841 YP_787328.1 CDS BAV2832 NC_010645.1 3075581 3076735 D ABC transporter substrate-binding protein 3075581..3076735 Bordetella avium 197N 6266225 YP_787329.1 CDS BAV2833 NC_010645.1 3076816 3077697 D ABC transporter permease 3076816..3077697 Bordetella avium 197N 6266226 YP_787330.1 CDS BAV2834 NC_010645.1 <3077698 3078567 D ABC transporter permease <3077698..3078567 Bordetella avium 197N 6266227 YP_787331.1 CDS BAV2835 NC_010645.1 3078560 3079348 D ABC transporter ATP-binding protein 3078560..3079348 Bordetella avium 197N 6266228 YP_787332.1 CDS BAV2836 NC_010645.1 3079345 3080055 D ABC transporter ATP-binding protein 3079345..3080055 Bordetella avium 197N 6266229 YP_787333.1 CDS BAV2837 NC_010645.1 3080229 3082139 R membrane-associated sulfatase complement(3080229..3082139) Bordetella avium 197N 6266230 YP_787334.1 CDS BAV2838 NC_010645.1 3082317 3083288 R membrane protein complement(3082317..3083288) Bordetella avium 197N 6266231 YP_787335.1 CDS algL NC_010645.1 3083383 3084384 R Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export; poly(beta-D-mannuronate) lyase complement(3083383..3084384) Bordetella avium 197N 6266232 YP_787336.1 CDS BAV2840 NC_010645.1 3084549 3085685 D lipoprotein 3084549..3085685 Bordetella avium 197N 6266233 YP_787337.1 CDS BAV2841 NC_010645.1 3085803 >3086486 R membrane protein complement(3085803..>3086486) Bordetella avium 197N 6266234 YP_787338.1 CDS BAV2842 NC_010645.1 3086547 3086825 R . Seems to be unique to the bordetellae.; hypothetical protein complement(3086547..3086825) Bordetella avium 197N 6266235 YP_787339.1 CDS BAV2843 NC_010645.1 3087104 3088090 R hypothetical protein complement(3087104..3088090) Bordetella avium 197N 6266236 YP_787340.1 CDS BAV2844 NC_010645.1 3088153 3088971 R class II aldolase class complement(3088153..3088971) Bordetella avium 197N 6266237 YP_787341.1 CDS BAV2845 NC_010645.1 3089074 3089997 D LysR family transcriptional regulator 3089074..3089997 Bordetella avium 197N 6266238 YP_787342.1 CDS BAV2846 NC_010645.1 3090157 3092964 D Shown to be expressed in lab of L. Temple; autotransporter 3090157..3092964 Bordetella avium 197N 6266239 YP_787343.1 CDS BAV2847 NC_010645.1 3093303 3095366 R hypothetical protein complement(3093303..3095366) Bordetella avium 197N 6267870 YP_787344.1 CDS tag NC_010645.1 3095497 3096099 R DNA-3-methyladenine glycosylase complement(3095497..3096099) Bordetella avium 197N 6266241 YP_787345.1 CDS BAV2849 NC_010645.1 3096213 3096683 D hypothetical protein 3096213..3096683 Bordetella avium 197N 6267785 YP_787346.1 CDS BAV2850 NC_010645.1 3096825 3097394 R iron transport sensor protein complement(3096825..3097394) Bordetella avium 197N 6266242 YP_787347.1 CDS kdsA NC_010645.1 3097600 3098448 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 3097600..3098448 Bordetella avium 197N 6266243 YP_787348.1 CDS metQ NC_010645.1 3098822 3099619 R Also similar to BAV3166 (55.8 38d.); D-methionine ABC transporter substrate-binding protein complement(3098822..3099619) Bordetella avium 197N 6267871 YP_787349.1 CDS metI NC_010645.1 3099663 3100262 R D-methionine ABC transporter permease complement(3099663..3100262) Bordetella avium 197N 6267343 YP_787350.1 CDS metN NC_010645.1 3100273 3101361 R D-methionine ABC transporter ATP-binding protein complement(3100273..3101361) Bordetella avium 197N 6267340 YP_787351.1 CDS BAV2855 NC_010645.1 3101561 >3103786 R glycoside hydrolase complement(3101561..>3103786) Bordetella avium 197N 6267342 YP_787352.1 CDS BAV2856 NC_010645.1 3104034 3105878 R hypothetical protein complement(3104034..3105878) Bordetella avium 197N 6266244 YP_787353.1 CDS suhB3 NC_010645.1 3105993 3106865 D Also similar to BAV2550 (27.413 38d 0d.) and BAV2568 (38.519 38d.).; inositol-1-monophosphatase 3 3105993..3106865 Bordetella avium 197N 6266245 YP_787354.1 CDS fadD NC_010645.1 3106871 3108556 R long-chain-fatty-acid--CoA ligase complement(3106871..3108556) Bordetella avium 197N 6267782 YP_787355.1 CDS BAV2859 NC_010645.1 3108635 3109828 D Also similar to several including BAV3418 (55.4 id.) and BAV2890 (50.7 38d); amidohydrolase/peptidase 3108635..3109828 Bordetella avium 197N 6266950 YP_787356.1 CDS BAV2860 NC_010645.1 3109830 >3110711 R LysR family transcriptional regulator complement(3109830..>3110711) Bordetella avium 197N 6266246 YP_787357.1 CDS BAV2861 NC_010645.1 3110817 3111854 D membrane protein 3110817..3111854 Bordetella avium 197N 6266247 YP_787358.1 CDS BAV2862 NC_010645.1 3111935 3112339 D acyl-CoA thioesterase 3111935..3112339 Bordetella avium 197N 6266248 YP_787359.1 CDS BAV2863 NC_010645.1 3112352 3113824 D magnesium transporter 3112352..3113824 Bordetella avium 197N 6266249 YP_787360.1 CDS pagP NC_010645.1 <3114132 3114689 D catalyzes the transfer of palmitate to lipid A; palmitoyl transferase <3114132..3114689 Bordetella avium 197N 6266250 YP_787361.1 CDS BAV2865 NC_010645.1 3114699 3115295 R Also similar to BAV2826 (58.2 38d.); cation transport-associated protein complement(3114699..3115295) Bordetella avium 197N 6267481 YP_787362.1 CDS grp NC_010645.1 3115457 >3115915 R AsnC/Lrp family transcriptional regulator complement(3115457..>3115915) Bordetella avium 197N 6266251 YP_787363.1 CDS BAV2867 NC_010645.1 3116136 3116660 D hypothetical protein 3116136..3116660 Bordetella avium 197N 6267117 YP_787364.1 CDS BAV2868 NC_010645.1 3116852 3117559 R hypothetical protein complement(3116852..3117559) Bordetella avium 197N 6266252 YP_787365.1 CDS secA2 NC_010645.1 3117562 3120294 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(3117562..3120294) Bordetella avium 197N 6266253 YP_787366.1 CDS BAV2870 NC_010645.1 3120440 3121423 R exported peptidase complement(3120440..3121423) Bordetella avium 197N 6267746 YP_787367.1 CDS BAV2871 NC_010645.1 3121550 3121960 D hypothetical protein 3121550..3121960 Bordetella avium 197N 6266254 YP_787368.1 CDS BAV2872 NC_010645.1 3121972 3122208 R lipoprotein complement(3121972..3122208) Bordetella avium 197N 6266255 YP_787369.1 CDS lpxC NC_010645.1 3122286 3123209 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(3122286..3123209) Bordetella avium 197N 6266256 YP_787370.1 CDS ftsZ NC_010645.1 3123458 3124642 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(3123458..3124642) Bordetella avium 197N 6266669 YP_787371.1 CDS divA NC_010645.1 3124825 3126051 R cell division protein complement(3124825..3126051) Bordetella avium 197N 6267044 YP_787372.1 CDS ftsQ NC_010645.1 3126056 >3126880 R cell division protein complement(3126056..>3126880) Bordetella avium 197N 6266881 YP_787373.1 CDS ddl NC_010645.1 3126889 3127842 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(3126889..3127842) Bordetella avium 197N 6267040 YP_787374.1 CDS murC NC_010645.1 3127839 3129245 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(3127839..3129245) Bordetella avium 197N 6266871 YP_787375.1 CDS murG NC_010645.1 3129242 3130315 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(3129242..3130315) Bordetella avium 197N 6267401 YP_787376.1 CDS ftsW NC_010645.1 3130312 3131505 R cell division protein complement(3130312..3131505) Bordetella avium 197N 6267404 YP_787377.1 CDS murD NC_010645.1 3131502 3133028 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(3131502..3133028) Bordetella avium 197N 6267041 YP_787378.1 CDS mraY NC_010645.1 3133025 >3134158 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(3133025..>3134158) Bordetella avium 197N 6267402 YP_787379.1 CDS murE NC_010645.1 3134184 3137003 R putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase complement(3134184..3137003) Bordetella avium 197N 6267382 YP_787380.1 CDS ftsI NC_010645.1 3137000 3138733 R penicillin-binding protein complement(3137000..3138733) Bordetella avium 197N 6267403 YP_787381.1 CDS ftsL NC_010645.1 3138730 3139005 R cell division protein complement(3138730..3139005) Bordetella avium 197N 6267036 YP_787382.1 CDS mraW NC_010645.1 3139005 3140072 R S-adenosyl-methyltransferase MraW complement(3139005..3140072) Bordetella avium 197N 6267039 YP_787383.1 CDS mraZ NC_010645.1 3140081 >3140509 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(3140081..>3140509) Bordetella avium 197N 6267381 YP_787384.1 CDS uup NC_010645.1 3141285 3143078 D ABC transporter ATP-binding protein 3141285..3143078 Bordetella avium 197N 6267959 YP_787385.1 CDS pyrC NC_010645.1 3143139 3144200 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(3143139..3144200) Bordetella avium 197N 6267921 YP_787386.1 CDS BAV2890 NC_010645.1 3144213 3145406 R amidohydrolase/peptidase complement(3144213..3145406) Bordetella avium 197N 6267609 YP_787387.1 CDS BAV2891 NC_010645.1 3145555 3145833 D hypothetical protein 3145555..3145833 Bordetella avium 197N 6266257 YP_787388.1 CDS BAV2892 NC_010645.1 3146038 >3146412 R membrane protein complement(3146038..>3146412) Bordetella avium 197N 6266258 YP_787389.1 CDS alsB NC_010645.1 3153014 3153490 R leucine-responsive regulatory protein complement(3153014..3153490) Bordetella avium 197N 6267961 YP_787390.1 CDS bllY NC_010645.1 3153635 3154747 D 4-hydroxyphenylpyruvate dioxygenase 3153635..3154747 Bordetella avium 197N 6266616 YP_787391.1 CDS msrA NC_010645.1 3154805 3155362 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(3154805..3155362) Bordetella avium 197N 6266721 YP_787392.1 CDS BAV2896 NC_010645.1 3155384 3155713 R cytochrome C complement(3155384..3155713) Bordetella avium 197N 6267392 YP_787393.1 CDS lgt NC_010645.1 3155883 3156677 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3155883..3156677 Bordetella avium 197N 6266260 YP_787394.1 CDS BAV2898 NC_010645.1 3156646 3157389 R hypothetical protein complement(3156646..3157389) Bordetella avium 197N 6267294 YP_787395.1 CDS BAV2899 NC_010645.1 3157728 3158039 R hypothetical protein complement(3157728..3158039) Bordetella avium 197N 6266261 YP_787396.1 CDS BAV2900 NC_010645.1 3158039 >3158563 R ; . Seems to be unique to the bordetellae.; hypothetical protein complement(3158039..>3158563) Bordetella avium 197N 6266262 YP_787397.1 CDS BAV2901 NC_010645.1 3158961 3159416 D membrane protein 3158961..3159416 Bordetella avium 197N 6266263 YP_787398.1 CDS glxR NC_010645.1 3161237 3162142 D Also similar to BAV1760 (35.2 38d); 2-hydroxy-3-oxopropionate reductase 3161237..3162142 Bordetella avium 197N 6266265 YP_787399.1 CDS acpD NC_010645.1 3162171 3162782 R acyl carrier protein phosphodiesterase complement(3162171..3162782) Bordetella avium 197N 6267100 YP_787400.1 CDS BAV2905 NC_010645.1 3162895 3163824 D LysR family transcriptional regulator 3162895..3163824 Bordetella avium 197N 6266588 YP_787401.1 CDS BAV2906 NC_010645.1 3163925 3164638 D hypothetical protein 3163925..3164638 Bordetella avium 197N 6266266 YP_787402.1 CDS BAV2907 NC_010645.1 3164873 3166369 R two-component sensor kinase complement(3164873..3166369) Bordetella avium 197N 6266267 YP_787403.1 CDS BAV2908 NC_010645.1 3166386 3167039 R two-component response regulator complement(3166386..3167039) Bordetella avium 197N 6266268 YP_787404.1 CDS nudH NC_010645.1 3167053 3167622 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(3167053..3167622) Bordetella avium 197N 6266269 YP_787405.1 CDS drpA NC_010645.1 3167688 3169418 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3167688..3169418 Bordetella avium 197N 6267432 YP_787406.1 CDS BAV2911 NC_010645.1 <3169472 3169894 D thioesterase <3169472..3169894 Bordetella avium 197N 6266902 YP_787407.1 CDS tolQ NC_010645.1 3169897 3170571 D TolQ protein 3169897..3170571 Bordetella avium 197N 6266270 YP_787408.1 CDS tolR NC_010645.1 3170571 3171026 D TolR protein 3170571..3171026 Bordetella avium 197N 6267818 YP_787409.1 CDS tolA NC_010645.1 3171034 3172167 D TolA protein 3171034..3172167 Bordetella avium 197N 6267819 YP_787410.1 CDS tolB NC_010645.1 3172175 3173500 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 3172175..3173500 Bordetella avium 197N 6267815 YP_787411.1 CDS excC NC_010645.1 3173532 3174029 D peptidoglycan-associated lipoprotein 3173532..3174029 Bordetella avium 197N 6267816 YP_787412.1 CDS BAV2917 NC_010645.1 3174112 3174798 D hypothetical protein 3174112..3174798 Bordetella avium 197N 6266942 YP_787413.1 CDS BAV2918 NC_010645.1 3174897 3175694 D hydrolase 3174897..3175694 Bordetella avium 197N 6266271 YP_787414.1 CDS far NC_010645.1 3175734 3177851 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3175734..3177851) Bordetella avium 197N 6266272 YP_787415.1 CDS BAV2920 NC_010645.1 3178244 3178705 R universal stress protein complement(3178244..3178705) Bordetella avium 197N 6266953 YP_787416.1 CDS BAV2921 NC_010645.1 3178793 3179137 R hypothetical protein complement(3178793..3179137) Bordetella avium 197N 6266273 YP_787417.1 CDS BAV2922 NC_010645.1 3179219 >3180628 R GntR family transcriptional regulator complement(3179219..>3180628) Bordetella avium 197N 6266274 YP_787418.1 CDS BAV2923 NC_010645.1 <3180753 3181682 D membrane protein <3180753..3181682 Bordetella avium 197N 6266275 YP_787419.1 CDS BAV2924 NC_010645.1 3181704 3182336 D amino acid efflux protein 3181704..3182336 Bordetella avium 197N 6266276 YP_787420.1 CDS BAV2925 NC_010645.1 3182356 3183192 R hypothetical protein complement(3182356..3183192) Bordetella avium 197N 6266277 YP_787421.1 CDS gtrA NC_010645.1 3183272 3183679 D bactoprenol-linked glucose translocase 3183272..3183679 Bordetella avium 197N 6266278 YP_787422.1 CDS arnT NC_010645.1 3183615 3185201 R 4-amino-4-deoxy-l-arabinose lipid A transferase complement(3183615..3185201) Bordetella avium 197N 6267136 YP_787423.1 CDS gtrB NC_010645.1 3185198 3186256 R bactoprenol glucosyl transferase complement(3185198..3186256) Bordetella avium 197N 6266653 YP_787424.1 CDS BAV2929 NC_010645.1 3186410 3186934 D acetyltransferase 3186410..3186934 Bordetella avium 197N 6267137 YP_787425.1 CDS BAV2930 NC_010645.1 3186931 3187107 R membrane protein complement(3186931..3187107) Bordetella avium 197N 6266279 YP_787426.1 CDS dnaQ NC_010645.1 3187721 3188452 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(3187721..3188452) Bordetella avium 197N 6267889 YP_787427.1 CDS BAV2932 NC_010645.1 3188472 >3191537 R multidrug efflux system transmembrane protein complement(3188472..>3191537) Bordetella avium 197N 6266896 YP_787428.1 CDS BAV2933 NC_010645.1 3191552 3192619 R multidrug efflux system inner membrane protein complement(3191552..3192619) Bordetella avium 197N 6266281 YP_787429.1 CDS rnhA NC_010645.1 3192760 3193221 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(3192760..3193221) Bordetella avium 197N 6266282 YP_787430.1 CDS BAV2935 NC_010645.1 3193282 >3194040 R hypothetical protein complement(3193282..>3194040) Bordetella avium 197N 6266861 YP_787431.1 CDS gloB NC_010645.1 3194058 3194867 D hydroxyacylglutathione hydrolase 3194058..3194867 Bordetella avium 197N 6266283 YP_787432.1 CDS mltD NC_010645.1 3194875 3196275 D membrane-bound lytic murein transglycosylase D 3194875..3196275 Bordetella avium 197N 6267092 YP_787433.1 CDS envM NC_010645.1 3196331 3197116 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 3196331..3197116 Bordetella avium 197N 6267360 YP_787434.1 CDS BAV2939 NC_010645.1 3197158 3197949 D hypothetical protein 3197158..3197949 Bordetella avium 197N 6266929 YP_787435.1 CDS BAV2940 NC_010645.1 3197946 3198911 R hypothetical protein complement(3197946..3198911) Bordetella avium 197N 6266284 YP_787436.1 CDS nadC NC_010645.1 3198986 3199876 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase complement(3198986..3199876) Bordetella avium 197N 6266285 YP_787437.1 CDS BAV2942 NC_010645.1 3199975 3200868 R hypothetical protein complement(3199975..3200868) Bordetella avium 197N 6267409 YP_787438.1 CDS BAV2943 NC_010645.1 3200976 3201782 R two-component response regulator complement(3200976..3201782) Bordetella avium 197N 6266286 YP_787439.1 CDS BAV2944 NC_010645.1 3201955 3202065 D hypothetical protein 3201955..3202065 Bordetella avium 197N 6266287 YP_787440.1 CDS BAV2945 NC_010645.1 <3202098 3202433 D transcriptional regulator <3202098..3202433 Bordetella avium 197N 6266288 YP_787441.1 CDS BAV2946 NC_010645.1 3202409 3202741 R hypothetical protein complement(3202409..3202741) Bordetella avium 197N 6266289 YP_787442.1 CDS nudC NC_010645.1 <3203014 3203787 D NADH pyrophosphatase <3203014..3203787 Bordetella avium 197N 6266290 YP_787443.1 CDS BAV2948 NC_010645.1 3203789 3204484 R hypothetical protein complement(3203789..3204484) Bordetella avium 197N 6267430 YP_787444.1 CDS BAV2949 NC_010645.1 3204557 3204922 D hypothetical protein 3204557..3204922 Bordetella avium 197N 6266291 YP_787445.1 CDS BAV2950 NC_010645.1 3204975 3205934 D hypothetical protein 3204975..3205934 Bordetella avium 197N 6266292 YP_787446.1 CDS hpaI NC_010645.1 3206191 >3207033 R 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase complement(3206191..>3207033) Bordetella avium 197N 6266293 YP_787447.1 CDS BAV2952 NC_010645.1 3207256 3208119 D hypothetical protein 3207256..3208119 Bordetella avium 197N 6267203 YP_787448.1 CDS BAV2953 NC_010645.1 3208558 3210078 R SpoVR family protein complement(3208558..3210078) Bordetella avium 197N 6267882 YP_787449.1 CDS BAV2954 NC_010645.1 3210075 3211334 R hypothetical protein complement(3210075..3211334) Bordetella avium 197N 6266295 YP_787450.1 CDS BAV2955 NC_010645.1 3211348 >3213273 R serine protein kinase complement(3211348..>3213273) Bordetella avium 197N 6266296 YP_787451.1 CDS ribE NC_010645.1 3213619 3214230 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(3213619..3214230) Bordetella avium 197N 6266297 YP_787452.1 CDS ribD NC_010645.1 3214241 3215356 R riboflavin biosynthesis protein [includes diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase complement(3214241..3215356) Bordetella avium 197N 6267653 YP_787453.1 CDS BAV2958 NC_010645.1 3215558 3216112 D isochorismatase family hydrolase 3215558..3216112 Bordetella avium 197N 6267652 YP_787454.1 CDS BAV2959 NC_010645.1 3216112 3217074 D transcriptional regulator 3216112..3217074 Bordetella avium 197N 6266298 YP_787455.1 CDS nrdR NC_010645.1 3217078 3217560 R transcriptional regulator NrdR complement(3217078..3217560) Bordetella avium 197N 6266299 YP_787456.1 CDS glyA NC_010645.1 3217707 3218957 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(3217707..3218957) Bordetella avium 197N 6267657 YP_787457.1 CDS BAV2962 NC_010645.1 3219157 3219813 R hypothetical protein complement(3219157..3219813) Bordetella avium 197N 6267101 YP_787458.1 CDS tyrS NC_010645.1 3219857 3221086 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(3219857..3221086) Bordetella avium 197N 6266300 YP_787459.1 CDS BAV2964 NC_010645.1 3221363 3222778 D peptidase 3221363..3222778 Bordetella avium 197N 6267909 YP_787460.1 CDS anmK NC_010645.1 3222780 3223898 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 3222780..3223898 Bordetella avium 197N 6266301 YP_787461.1 CDS BAV2966 NC_010645.1 3223953 3224324 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(3223953..3224324) Bordetella avium 197N 6266302 YP_787462.1 CDS BAV2967 NC_010645.1 3224412 3225212 R hypothetical protein complement(3224412..3225212) Bordetella avium 197N 6266303 YP_787463.1 CDS argC NC_010645.1 3225241 3226302 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(3225241..3226302) Bordetella avium 197N 6266304 YP_787464.1 CDS rpsI NC_010645.1 3226444 3226836 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(3226444..3226836) Bordetella avium 197N 6266644 YP_787465.1 CDS rplM NC_010645.1 3226846 3227274 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(3226846..3227274) Bordetella avium 197N 6267717 YP_787466.1 CDS BAV2971 NC_010645.1 3227521 3228600 R exported solute binding protein complement(3227521..3228600) Bordetella avium 197N 6267683 YP_787467.1 CDS BAV2972 NC_010645.1 3228691 3229929 R hypothetical protein complement(3228691..3229929) Bordetella avium 197N 6266305 YP_787468.1 CDS pmbA NC_010645.1 3230236 3231600 R protease complement(3230236..3231600) Bordetella avium 197N 6266306 YP_787469.1 CDS BAV2974 NC_010645.1 3231659 3232213 D hypothetical protein 3231659..3232213 Bordetella avium 197N 6267545 YP_787470.1 CDS estB NC_010645.1 3232221 3232886 D carboxylesterase 3232221..3232886 Bordetella avium 197N 6266307 YP_787471.1 CDS BAV2976 NC_010645.1 3232891 3235377 R acetyltransferase complement(3232891..3235377) Bordetella avium 197N 6266932 YP_787472.1 CDS gltX NC_010645.1 3235504 3236907 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 3235504..3236907 Bordetella avium 197N 6266308 YP_787473.1 CDS BAV2978 NC_010645.1 3236917 3238104 R transporter complement(3236917..3238104) Bordetella avium 197N 6267099 YP_787474.1 CDS BAV2979 NC_010645.1 3238157 3238675 R . Seems to be unique to the bordetellae.; hypothetical protein complement(3238157..3238675) Bordetella avium 197N 6266309 YP_787475.1 CDS BAV2980 NC_010645.1 3238845 3239297 R AsnC/Lrp family transcriptional regulator complement(3238845..3239297) Bordetella avium 197N 6266310 YP_787476.1 CDS BAV2981 NC_010645.1 3239420 3242899 D catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; 2-oxoacid ferredoxin oxidoreductase 3239420..3242899 Bordetella avium 197N 6266311 YP_787477.1 CDS nrdA NC_010645.1 3243201 3246113 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3243201..3246113 Bordetella avium 197N 6266312 YP_787478.1 CDS nrdB NC_010645.1 3246135 3247319 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 3246135..3247319 Bordetella avium 197N 6267427 YP_787479.1 CDS bph1 NC_010645.1 3247623 3248348 D histone 3247623..3248348 Bordetella avium 197N 6267428 YP_787480.1 CDS dnt NC_010645.1 3248423 3252817 R dermonecrotic toxin complement(3248423..3252817) Bordetella avium 197N 6266724 YP_787481.1 CDS BAV2986 NC_010645.1 3253047 3253589 D membrane protein 3253047..3253589 Bordetella avium 197N 6266899 YP_787482.1 CDS dltA NC_010645.1 3253611 3255047 R D-alanine-D-alanyl carrier protein ligase complement(3253611..3255047) Bordetella avium 197N 6266313 YP_787483.1 CDS dltB NC_010645.1 3255058 3256185 R D-alanine transferase complement(3255058..3256185) Bordetella avium 197N 6266883 YP_787484.1 CDS BAV2989 NC_010645.1 3256196 3256321 R . Seems to be unique to the bordetellae.; hypothetical protein complement(3256196..3256321) Bordetella avium 197N 6266884 YP_787485.1 CDS dltD NC_010645.1 3256318 3257493 R D-alanine transferase complement(3256318..3257493) Bordetella avium 197N 6266314 YP_787486.1 CDS BAV2991 NC_010645.1 3257474 3257710 R acyl carrier protein complement(3257474..3257710) Bordetella avium 197N 6266885 YP_787487.1 CDS slyB NC_010645.1 3257976 3258473 R outer membrane lipoprotein complement(3257976..3258473) Bordetella avium 197N 6266315 YP_787488.1 CDS adoK NC_010645.1 3258655 3259596 R adenosine kinase complement(3258655..3259596) Bordetella avium 197N 6267758 YP_787489.1 CDS BAV2994 NC_010645.1 3259606 3260730 R membrane protein complement(3259606..3260730) Bordetella avium 197N 6266606 YP_787490.1 CDS prmA NC_010645.1 3260752 3261669 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(3260752..3261669) Bordetella avium 197N 6266316 YP_787491.1 CDS accC NC_010645.1 3261760 3263106 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(3261760..3263106) Bordetella avium 197N 6267574 YP_787492.1 CDS accB NC_010645.1 3263115 3263558 R composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit complement(3263115..3263558) Bordetella avium 197N 6266576 YP_787493.1 CDS aroQ NC_010645.1 3263649 3264083 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(3263649..3264083) Bordetella avium 197N 6266574 YP_787494.1 CDS BAV2999 NC_010645.1 3264159 3264674 R thiol:disulfide interchange protein complement(3264159..3264674) Bordetella avium 197N 6266661 YP_787495.1 CDS mpl NC_010645.1 3264742 3266112 D UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 3264742..3266112 Bordetella avium 197N 6266317 YP_787496.1 CDS BAV3001 NC_010645.1 3266123 3266716 D hypothetical protein 3266123..3266716 Bordetella avium 197N 6267379 YP_787497.1 CDS BAV3002 NC_010645.1 3266764 3268650 D ribonuclease 3266764..3268650 Bordetella avium 197N 6266318 YP_787498.1 CDS BAV3003 NC_010645.1 <3268705 3269577 D membrane protein <3268705..3269577 Bordetella avium 197N 6266319 YP_787499.1 CDS aroE NC_010645.1 3269574 3270431 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3269574..3270431 Bordetella avium 197N 6266320 YP_787500.1 CDS mtgA NC_010645.1 3270514 3271236 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3270514..3271236 Bordetella avium 197N 6266657 YP_787501.1 CDS BAV3006 NC_010645.1 3271326 3272495 D permease 3271326..3272495 Bordetella avium 197N 6267395 YP_787502.1 CDS apaH NC_010645.1 3272543 3273379 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 3272543..3273379 Bordetella avium 197N 6266321 YP_787503.1 CDS BAV3008 NC_010645.1 3273383 3274123 R phospholipid/glycerol acyltransferase complement(3273383..3274123) Bordetella avium 197N 6266631 YP_787504.1 CDS pyrC NC_010645.1 3274120 >3275292 R dihydroorotase complement(3274120..>3275292) Bordetella avium 197N 6266322 YP_787505.1 CDS pyrB NC_010645.1 3275295 3276065 R aspartate carbamoyltransferase complement(3275295..3276065) Bordetella avium 197N 6267610 YP_787506.1 CDS yqgF NC_010645.1 3276069 3276464 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(3276069..3276464) Bordetella avium 197N 6267608 YP_787507.1 CDS BAV3012 NC_010645.1 3276457 3277050 R hypothetical protein complement(3276457..3277050) Bordetella avium 197N 6267950 YP_787508.1 CDS rub NC_010645.1 3277136 3277300 R rubredoxin complement(3277136..3277300) Bordetella avium 197N 6266323 YP_787509.1 CDS thiD NC_010645.1 <3277448 3278257 D phosphomethylpyrimidine kinase <3277448..3278257 Bordetella avium 197N 6267736 YP_787510.1 CDS thiE NC_010645.1 3278254 3278904 D Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 3278254..3278904 Bordetella avium 197N 6267799 YP_787511.1 CDS hemL NC_010645.1 3278909 3280192 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3278909..3280192 Bordetella avium 197N 6267801 YP_787512.1 CDS BAV3017 NC_010645.1 3280413 3282044 D hypothetical protein 3280413..3282044 Bordetella avium 197N 6267159 YP_787513.1 CDS BAV3018 NC_010645.1 3282041 3282454 R endoribonuclease complement(3282041..3282454) Bordetella avium 197N 6266324 YP_787514.1 CDS BAV3019 NC_010645.1 3282471 3282899 R 4-hydroxybenzoyl CoA thioesterase complement(3282471..3282899) Bordetella avium 197N 6266325 YP_787515.1 CDS BAV3020 NC_010645.1 3282899 3284551 R 2-aminobenzoate-CoA ligase complement(3282899..3284551) Bordetella avium 197N 6266326 YP_787516.1 CDS BAV3021 NC_010645.1 3284590 3285747 R acyl-CoA dehydrogenase complement(3284590..3285747) Bordetella avium 197N 6266327 YP_787517.1 CDS BAV3022 NC_010645.1 3285751 3286596 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3285751..3286596) Bordetella avium 197N 6266328 YP_787518.1 CDS BAV3023 NC_010645.1 3286613 3287401 R D-beta-hydroxybutyrate dehydrogenase complement(3286613..3287401) Bordetella avium 197N 6266329 YP_787519.1 CDS BAV3024 NC_010645.1 3287398 3289743 R catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; salicylyl-CoA 5-hydroxylase complement(3287398..3289743) Bordetella avium 197N 6266330 YP_787520.1 CDS BAV3025 NC_010645.1 3289882 3290679 R signaling protein complement(3289882..3290679) Bordetella avium 197N 6266331 YP_787521.1 CDS BAV3026 NC_010645.1 3290676 3291056 R hypothetical protein complement(3290676..3291056) Bordetella avium 197N 6266332 YP_787522.1 CDS BAV3027 NC_010645.1 3291090 3291629 R hypothetical protein complement(3291090..3291629) Bordetella avium 197N 6266333 YP_787523.1 CDS BAV3028 NC_010645.1 3291651 3293639 R sensor kinase complement(3291651..3293639) Bordetella avium 197N 6266334 YP_787524.1 CDS BAV3029 NC_010645.1 3293931 3294635 R ABC transporter ATP-binding protein complement(3293931..3294635) Bordetella avium 197N 6266335 YP_787525.1 CDS BAV3030 NC_010645.1 3294629 3295411 R ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein complement(3294629..3295411) Bordetella avium 197N 6266336 YP_787526.1 CDS BAV3031 NC_010645.1 3295408 3296361 R ABC transporter permease complement(3295408..3296361) Bordetella avium 197N 6266337 YP_787527.1 CDS BAV3032 NC_010645.1 3296369 3297289 R ABC transporter permease complement(3296369..3297289) Bordetella avium 197N 6266338 YP_787528.1 CDS BAV3033 NC_010645.1 3297352 3298515 R ABC transporter substrate-binding protein complement(3297352..3298515) Bordetella avium 197N 6266339 YP_787529.1 CDS BAV3034 NC_010645.1 3298864 3299349 D MarR family transcriptional regulator 3298864..3299349 Bordetella avium 197N 6266340 YP_787530.1 CDS BAV3035 NC_010645.1 3299397 3300392 D membrane protein 3299397..3300392 Bordetella avium 197N 6266341 YP_787531.1 CDS argJ NC_010645.1 3300481 3301707 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 3300481..3301707 Bordetella avium 197N 6266342 YP_787532.1 CDS BAV3037 NC_010645.1 <3301871 3302737 D hypothetical protein <3301871..3302737 Bordetella avium 197N 6266650 YP_787533.1 CDS BAV3038 NC_010645.1 3302730 3303695 D hypothetical protein 3302730..3303695 Bordetella avium 197N 6266343 YP_787534.1 CDS BAV3039 NC_010645.1 3303834 3304430 D One of 11 fimbrial subunits; fimbrial subunit 3303834..3304430 Bordetella avium 197N 6266344 YP_787535.1 CDS BAV3040 NC_010645.1 3304405 3305841 R multidrug efflux system outer membrane protein complement(3304405..3305841) Bordetella avium 197N 6266345 YP_787536.1 CDS BAV3041 NC_010645.1 3305838 3308948 R multidrug efflux system transmembrane protein complement(3305838..3308948) Bordetella avium 197N 6266346 YP_787537.1 CDS BAV3042 NC_010645.1 3308945 >3312031 R multidrug efflux system transmembrane protein complement(3308945..>3312031) Bordetella avium 197N 6266347 YP_787538.1 CDS BAV3043 NC_010645.1 3312038 3313273 R multidrug efflux system inner membrane protein complement(3312038..3313273) Bordetella avium 197N 6266348 YP_787539.1 CDS BAV3044 NC_010645.1 3313450 >3314202 R hypothetical protein complement(3313450..>3314202) Bordetella avium 197N 6266349 YP_787540.1 CDS coaE NC_010645.1 3314248 3314889 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(3314248..3314889) Bordetella avium 197N 6266350 YP_787541.1 CDS BAV3046 NC_010645.1 3314901 3315653 R type 4 prepilin-like protein leader peptide processing enzyme complement(3314901..3315653) Bordetella avium 197N 6266799 YP_787542.1 CDS BAV3047 NC_010645.1 3315896 3316567 D . Seems to be unique to the bordetellae.; hypothetical protein 3315896..3316567 Bordetella avium 197N 6266351 YP_787543.1 CDS panC NC_010645.1 3316925 3317767 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(3316925..3317767) Bordetella avium 197N 6266352 YP_787544.1 CDS BAV3049 NC_010645.1 3317800 3318681 R hypothetical protein complement(3317800..3318681) Bordetella avium 197N 6267482 YP_787545.1 CDS BAV3050 NC_010645.1 3318704 3318907 R hypothetical protein complement(3318704..3318907) Bordetella avium 197N 6266353 YP_787546.1 CDS BAV3051 NC_010645.1 3319076 3320461 D transporter 3319076..3320461 Bordetella avium 197N 6266354 YP_787547.1 CDS glpK NC_010645.1 3320451 3321950 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 3320451..3321950 Bordetella avium 197N 6266355 YP_787548.1 CDS BAV3053 NC_010645.1 3321958 >3322365 R membrane protein complement(3321958..>3322365) Bordetella avium 197N 6267094 YP_787549.1 CDS BAV3054 NC_010645.1 3322383 3323399 R hypothetical protein complement(3322383..3323399) Bordetella avium 197N 6266356 YP_787550.1 CDS aapP NC_010645.1 3323533 3324273 R L-amino acid ABC transporter ATP-binding protein complement(3323533..3324273) Bordetella avium 197N 6266357 YP_787551.1 CDS aapM NC_010645.1 3324323 3325423 R L-amino acid ABC transporter permease complement(3324323..3325423) Bordetella avium 197N 6266568 YP_787552.1 CDS aapQ NC_010645.1 3325425 3326603 R L-amino acid ABC transporter permease complement(3325425..3326603) Bordetella avium 197N 6266567 YP_787553.1 CDS aapJ NC_010645.1 3326708 3327724 R L-amino acid ABC transporter substrate-binding protein complement(3326708..3327724) Bordetella avium 197N 6266569 YP_787554.1 CDS ftsE NC_010645.1 3327975 3328646 D cell division ATP-binding protein 3327975..3328646 Bordetella avium 197N 6266566 YP_787555.1 CDS ftsX NC_010645.1 3328643 3329551 D cell division protein 3328643..3329551 Bordetella avium 197N 6267034 YP_787556.1 CDS BAV3061 NC_010645.1 3329812 3330492 D catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 3329812..3330492 Bordetella avium 197N 6267042 YP_787557.1 CDS BAV3062 NC_010645.1 3330524 3334144 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(3330524..3334144) Bordetella avium 197N 6266358 YP_787558.1 CDS micA NC_010645.1 3334300 3335367 D A/G-specific adenine glycosylase 3334300..3335367 Bordetella avium 197N 6266359 YP_787559.1 CDS BAV3064 NC_010645.1 3335309 3336175 R hypothetical protein complement(3335309..3336175) Bordetella avium 197N 6267353 YP_787560.1 CDS BAV3065 NC_010645.1 3336256 3337020 D methyltransferase 3336256..3337020 Bordetella avium 197N 6266360 YP_787561.1 CDS metH NC_010645.1 3337028 >3340804 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(3337028..>3340804) Bordetella avium 197N 6266361 YP_787562.1 CDS btuB NC_010645.1 <3341112 3343082 D TonB-dependent vitamin B12 receptor <3341112..3343082 Bordetella avium 197N 6267339 YP_787563.1 CDS btuF NC_010645.1 3343098 3344003 D vitamin B12 transport protein 3343098..3344003 Bordetella avium 197N 6266744 YP_787564.1 CDS thiG NC_010645.1 3344268 3345065 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 3344268..3345065 Bordetella avium 197N 6266745 YP_787565.1 CDS thiD NC_010645.1 3345062 3345886 D phosphomethylpyrimidine kinase 3345062..3345886 Bordetella avium 197N 6267803 YP_787566.1 CDS pcm NC_010645.1 3345957 3346637 D protein-L-isoaspartate O-methyltransferase 3345957..3346637 Bordetella avium 197N 6267800 YP_787567.1 CDS tolC NC_010645.1 3346643 3347968 D outer membrane protein 3346643..3347968 Bordetella avium 197N 6267491 YP_787568.1 CDS aut NC_010645.1 3347977 3348465 R Similar to the C-terminal region of Escherichia coli bifunctional protein HldE. this region encodes D-beta-D- heptose 1-phosphate adenosyltransferase that is involved in inner core lipopolysaccharide biosynthesis.; transferase complement(3347977..3348465) Bordetella avium 197N 6267817 YP_787569.1 CDS BAV3074 NC_010645.1 3348503 3349390 R hypothetical protein complement(3348503..3349390) Bordetella avium 197N 6266686 YP_787570.1 CDS ubiB NC_010645.1 3349573 3351126 R an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB complement(3349573..3351126) Bordetella avium 197N 6266362 YP_787571.1 CDS BAV3076 NC_010645.1 3351123 3351758 R hypothetical protein complement(3351123..3351758) Bordetella avium 197N 6266570 YP_787572.1 CDS BAV3077 NC_010645.1 3351837 3352988 R exopolysaccharide biosynthesis aminotransferase complement(3351837..3352988) Bordetella avium 197N 6266363 YP_787573.1 CDS BAV3078 NC_010645.1 3352985 3353566 R exopolysaccharide biosynthesis glycosyl transferase complement(3352985..3353566) Bordetella avium 197N 6266364 YP_787574.1 CDS BAV3079 NC_010645.1 3353569 3354216 R O-acyltransferase complement(3353569..3354216) Bordetella avium 197N 6266365 YP_787575.1 CDS BAV3080 NC_010645.1 3354219 3355367 R dioxygenase complement(3354219..3355367) Bordetella avium 197N 6266366 YP_787576.1 CDS BAV3081 NC_010645.1 3355364 3355978 R glycosyl transferase complement(3355364..3355978) Bordetella avium 197N 6266367 YP_787577.1 CDS BAV3082 NC_010645.1 3355975 3356694 R short-chain dehydrogenase/reductase complement(3355975..3356694) Bordetella avium 197N 6266368 YP_787578.1 CDS BAV3083 NC_010645.1 3356691 3357356 R short-chain dehydrogenase/reductase complement(3356691..3357356) Bordetella avium 197N 6266369 YP_787579.1 CDS BAV3084 NC_010645.1 3357367 >3358458 R 3-oxoacyl-[acyl-carrier-protein] synthase complement(3357367..>3358458) Bordetella avium 197N 6266370 YP_787580.1 CDS BAV3085 NC_010645.1 3358455 >3358712 R acyl carrier protein complement(3358455..>3358712) Bordetella avium 197N 6266371 YP_787581.1 CDS BAV3086 NC_010645.1 3358705 3359451 R O-antigen export ABC transporter ATP-binding protein complement(3358705..3359451) Bordetella avium 197N 6266372 YP_787582.1 CDS BAV3087 NC_010645.1 3359453 3360223 R O-antigen export ABC transporter permease complement(3359453..3360223) Bordetella avium 197N 6266373 YP_787583.1 CDS BAV3088 NC_010645.1 3360531 3361517 R membrane protein complement(3360531..3361517) Bordetella avium 197N 6266374 YP_787584.1 CDS ubiE NC_010645.1 3361662 3362432 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(3361662..3362432) Bordetella avium 197N 6266375 YP_787585.1 CDS phoB NC_010645.1 3362574 3363272 D phosphate regulon two-component response regulator 3362574..3363272 Bordetella avium 197N 6267911 YP_787586.1 CDS phoR NC_010645.1 3363285 3364607 D phosphate regulon two-component system sensor kinase 3363285..3364607 Bordetella avium 197N 6267529 YP_787587.1 CDS BAV3092 NC_010645.1 3364748 3365209 D hypothetical protein 3364748..3365209 Bordetella avium 197N 6267530 YP_787588.1 CDS serA NC_010645.1 3365362 3366561 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3365362..3366561 Bordetella avium 197N 6266376 YP_787589.1 CDS brg1 NC_010645.1 3366567 3367448 R LysR family transcriptional regulator complement(3366567..3367448) Bordetella avium 197N 6267753 YP_787590.1 CDS BAV3095 NC_010645.1 3367591 3368022 D dioxygenase 3367591..3368022 Bordetella avium 197N 6266739 YP_787591.1 CDS kipI NC_010645.1 3368044 3368769 D Also similar to BAV3298 (28.6 38d).; histidine kinase inhibitor 3368044..3368769 Bordetella avium 197N 6266377 YP_787592.1 CDS kipA NC_010645.1 3368766 3369782 D Also similar to BAV3297 (36.8 38d); histidine kinase inhibitor antagonist 3368766..3369782 Bordetella avium 197N 6267276 YP_787593.1 CDS BAV3098 NC_010645.1 3369779 3370537 D LamB/YcsF family protein 3369779..3370537 Bordetella avium 197N 6267275 YP_787594.1 CDS BAV3099 NC_010645.1 3370534 3371313 R GntR family transcriptional regulator complement(3370534..3371313) Bordetella avium 197N 6266378 YP_787595.1 CDS BAV3100 NC_010645.1 3371344 3375306 R FAD-linked oxidase complement(3371344..3375306) Bordetella avium 197N 6266379 YP_787596.1 CDS BAV3101 NC_010645.1 3375421 3375942 R membrane protein complement(3375421..3375942) Bordetella avium 197N 6266380 YP_787597.1 CDS ilvA NC_010645.1 3376035 3377543 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 3376035..3377543 Bordetella avium 197N 6266381 YP_787598.1 CDS BAV3103 NC_010645.1 3377733 3378845 R outer membrane porin complement(3377733..3378845) Bordetella avium 197N 6267234 YP_787599.1 CDS BAV3104 NC_010645.1 3379111 3379326 D hypothetical protein 3379111..3379326 Bordetella avium 197N 6266382 YP_787600.1 CDS BAV3105 NC_010645.1 3379475 3380365 D LysR family transcriptional regulator 3379475..3380365 Bordetella avium 197N 6266383 YP_787601.1 CDS apt NC_010645.1 3380392 3380940 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(3380392..3380940) Bordetella avium 197N 6266384 YP_787602.1 CDS cydC NC_010645.1 3381003 3382652 R ABC transporter ATP-binding protein complement(3381003..3382652) Bordetella avium 197N 6266637 YP_787603.1 CDS cydD NC_010645.1 3382654 >3384393 R ABC transporter ATP-binding protein complement(3382654..>3384393) Bordetella avium 197N 6266832 YP_787604.1 CDS BAV3109 NC_010645.1 3384390 3384515 R hypothetical protein complement(3384390..3384515) Bordetella avium 197N 6266833 YP_787605.1 CDS cydB2 NC_010645.1 3384530 3385681 R Also similar to BAV0992 (44.3 38d 0d.); cytochrome D ubiquinol oxidase subunit II complement(3384530..3385681) Bordetella avium 197N 6266385 YP_787606.1 CDS cydA2 NC_010645.1 3385699 3387276 R Also similar to BAV0991 (54.6 38d.); cytochrome D ubiquinol oxidase subunit I complement(3385699..3387276) Bordetella avium 197N 6266831 YP_787607.1 CDS BAV3112 NC_010645.1 3387333 >3387905 R hypothetical protein complement(3387333..>3387905) Bordetella avium 197N 6266829 YP_787608.1 CDS purT NC_010645.1 3388164 3389381 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(3388164..3389381) Bordetella avium 197N 6266386 YP_787609.1 CDS kdsD NC_010645.1 3389500 3390486 D arabinose 5-phosphate isomerase 3389500..3390486 Bordetella avium 197N 6267604 YP_787610.1 CDS kdsC NC_010645.1 3390483 3391094 D 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3390483..3391094 Bordetella avium 197N 6267272 YP_787611.1 CDS BAV3116 NC_010645.1 3391100 3391723 D hypothetical protein 3391100..3391723 Bordetella avium 197N 6267271 YP_787612.1 CDS BAV3117 NC_010645.1 3391720 3392325 D hypothetical protein 3391720..3392325 Bordetella avium 197N 6266387 YP_787613.1 CDS BAV3118 NC_010645.1 3392362 3393141 D ABC transporter ATP-binding protein 3392362..3393141 Bordetella avium 197N 6266388 YP_787614.1 CDS BAV3119 NC_010645.1 3393185 3394426 R heat shock protein complement(3393185..3394426) Bordetella avium 197N 6266389 YP_787615.1 CDS ada NC_010645.1 3394663 3395739 R similar over its C-terminal region to BAV2217 (45.399 38d.); Ada regulatory protein complement(3394663..3395739) Bordetella avium 197N 6266390 YP_787616.1 CDS aidD NC_010645.1 3395833 3396474 R alkylated DNA repair protein complement(3395833..3396474) Bordetella avium 197N 6266597 YP_787617.1 CDS BAV3122 NC_010645.1 3396557 3397456 R LysR family transcriptional regulator complement(3396557..3397456) Bordetella avium 197N 6266610 YP_787618.1 CDS BAV3123 NC_010645.1 3397606 3398586 D hypothetical protein 3397606..3398586 Bordetella avium 197N 6266391 YP_787619.1 CDS BAV3124 NC_010645.1 3398590 3399789 D amidohydrolase/peptidase 3398590..3399789 Bordetella avium 197N 6266392 YP_787620.1 CDS BAV3125 NC_010645.1 <3399786 3400478 D Involved in nucleotide synthesis and salvage; phosphoribosyltransferase <3399786..3400478 Bordetella avium 197N 6266393 YP_787621.1 CDS BAV3126 NC_010645.1 3400905 3402461 D FAD-dependent oxidoreductase 3400905..3402461 Bordetella avium 197N 6266394 YP_787622.1 CDS BAV3127 NC_010645.1 3402458 3402631 D hypothetical protein 3402458..3402631 Bordetella avium 197N 6266395 YP_787623.1 CDS BAV3128 NC_010645.1 3402665 3403621 D hypothetical protein 3402665..3403621 Bordetella avium 197N 6266396 YP_787624.1 CDS BAV3129 NC_010645.1 3403672 3404133 D MarR family transcriptional regulator 3403672..3404133 Bordetella avium 197N 6266397 YP_787625.1 CDS hmuV NC_010645.1 3404139 3404924 R with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit complement(3404139..3404924) Bordetella avium 197N 6266398 YP_787626.1 CDS bhuU NC_010645.1 3404924 3405928 R hemin ABC transporter permease complement(3404924..3405928) Bordetella avium 197N 6266712 YP_787627.1 CDS bhuT NC_010645.1 3405912 3406745 R hemin ABC transporter substrate-binding protein complement(3405912..3406745) Bordetella avium 197N 6266711 YP_787628.1 CDS bhuS NC_010645.1 3406753 3407799 R heme degradase complement(3406753..3407799) Bordetella avium 197N 6266710 YP_787629.1 CDS bhuR NC_010645.1 3407856 3410330 R outer membrane TonB-dependent heme receptor complement(3407856..3410330) Bordetella avium 197N 6266709 YP_787630.1 CDS hurR NC_010645.1 3410526 3411449 R heme uptake transmembrane sensor complement(3410526..3411449) Bordetella avium 197N 6266708 YP_787631.1 CDS hurI NC_010645.1 3411446 3411961 R heme uptake RNA polymerase sigma-70 factor complement(3411446..3411961) Bordetella avium 197N 6267222 YP_787632.1 CDS BAV3137 NC_010645.1 3412276 3413274 D hypothetical protein 3412276..3413274 Bordetella avium 197N 6267221 YP_787633.1 CDS BAV3138 NC_010645.1 3413258 3414046 D exported polysaccharide deacetylase 3413258..3414046 Bordetella avium 197N 6266399 YP_787634.1 CDS BAV3139 NC_010645.1 3414053 3415042 D membrane protein 3414053..3415042 Bordetella avium 197N 6266400 YP_787635.1 CDS BAV3140 NC_010645.1 3415011 3415511 R acyl-CoA thioester hydrolase complement(3415011..3415511) Bordetella avium 197N 6266401 YP_787636.1 CDS BAV3141 NC_010645.1 3415553 3416974 R hypothetical protein complement(3415553..3416974) Bordetella avium 197N 6266402 YP_787637.1 CDS fdnG NC_010645.1 3417241 3420309 D the active-site selenocysteine, residue 197, is encoded by an opal stop codon; formate dehydrogenase, major subunit join(3417241..3417828,3417832..3420309) Bordetella avium 197N 6266403 YP_787638.1 CDS fdnH NC_010645.1 3420319 3421218 D formate dehydrogenase, iron-sulfur subunit 3420319..3421218 Bordetella avium 197N 6266406 YP_787639.1 CDS fdnI NC_010645.1 3421211 3421858 D formate dehydrogenase, cytochrome b556 3421211..3421858 Bordetella avium 197N 6266961 YP_787640.1 CDS fdhE NC_010645.1 3421938 3422873 D formate dehydrogenase formation protein 3421938..3422873 Bordetella avium 197N 6266962 YP_787641.1 CDS selA NC_010645.1 3422870 3424273 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 3422870..3424273 Bordetella avium 197N 6266958 YP_787642.1 CDS SelB(TCA) NC_010645.1 3424270 3426180 D selenocysteine-specific elongation factor 3424270..3426180 Bordetella avium 197N 6267751 YP_787643.1 CDS fdhB NC_010645.1 3426329 3427378 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 3426329..3427378 Bordetella avium 197N 6267962 YP_787644.1 CDS BAV3150 NC_010645.1 3427503 3428402 R LysR family transcriptional regulator complement(3427503..3428402) Bordetella avium 197N 6266956 YP_787645.1 CDS BAV3151 NC_010645.1 3428593 3429219 D isomerase 3428593..3429219 Bordetella avium 197N 6266407 YP_787646.1 CDS trpC NC_010645.1 3429220 3430008 R involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase complement(3429220..3430008) Bordetella avium 197N 6266408 YP_787647.1 CDS trpD NC_010645.1 3430005 3431036 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(3430005..3431036) Bordetella avium 197N 6267894 YP_787648.1 CDS pabA NC_010645.1 3431053 3431616 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(3431053..3431616) Bordetella avium 197N 6267895 YP_787649.1 CDS BAV3155 NC_010645.1 3432245 3432577 D sigma(54) modulation protein 3432245..3432577 Bordetella avium 197N 6267479 YP_787650.1 CDS BAV3155A NC_010645.1 3432650 3432790 D hypothetical protein 3432650..3432790 Bordetella avium 197N 6266409 YP_787651.1 CDS ptsN NC_010645.1 3432790 3433254 D nitrogen regulatory IIA protein 3432790..3433254 Bordetella avium 197N 6266410 YP_787652.1 CDS hprK NC_010645.1 3433268 3434194 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 3433268..3434194 Bordetella avium 197N 6267592 YP_787653.1 CDS BAV3158 NC_010645.1 3434293 3435165 D hypothetical protein 3434293..3435165 Bordetella avium 197N 6267204 YP_787654.1 CDS BAV3159 NC_010645.1 3435162 3436049 D lipoprotein 3435162..3436049 Bordetella avium 197N 6266411 YP_787655.1 CDS ogt NC_010645.1 3436060 3436617 R methylated-DNA--protein-cysteine methyltransferase complement(3436060..3436617) Bordetella avium 197N 6266412 YP_787656.1 CDS BAV3161 NC_010645.1 3436614 3437546 R uroporphyrin-III C/tetrapyrrole methyltransferase complement(3436614..3437546) Bordetella avium 197N 6267454 YP_787657.1 CDS BAV3162 NC_010645.1 3437587 3438024 D hypothetical protein 3437587..3438024 Bordetella avium 197N 6266413 YP_787658.1 CDS gmhA NC_010645.1 3438059 3438652 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 3438059..3438652 Bordetella avium 197N 6266414 YP_787659.1 CDS BAV3164 NC_010645.1 3438652 3439389 D transport lipoprotein 3438652..3439389 Bordetella avium 197N 6267104 YP_787660.1 CDS BAV3165 NC_010645.1 3439386 3439880 D thiol-disulfide oxidoreductase 3439386..3439880 Bordetella avium 197N 6266415 YP_787661.1 CDS BAV3166 NC_010645.1 3439931 3440719 R Also similar to BAV2852 (55.8 38d.); hypothetical protein complement(3439931..3440719) Bordetella avium 197N 6266416 YP_787662.1 CDS argB NC_010645.1 3440958 3441860 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 3440958..3441860 Bordetella avium 197N 6266417 YP_787663.1 CDS BAV3168 NC_010645.1 3441860 3442603 D phosphatase 3441860..3442603 Bordetella avium 197N 6266642 YP_787664.1 CDS slmA NC_010645.1 3442633 3443208 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 3442633..3443208 Bordetella avium 197N 6266418 YP_787665.1 CDS BAV3170 NC_010645.1 3443361 3444857 D transporter 3443361..3444857 Bordetella avium 197N 6266419 YP_787666.1 CDS ldh NC_010645.1 3444868 3445920 D L-lactate dehydrogenase 3444868..3445920 Bordetella avium 197N 6266420 YP_787667.1 CDS mrdB NC_010645.1 3445957 3447093 R rod shape-determining protein complement(3445957..3447093) Bordetella avium 197N 6267283 YP_787668.1 CDS mrdA NC_010645.1 3447090 3448988 R penicillin-binding protein complement(3447090..3448988) Bordetella avium 197N 6267386 YP_787669.1 CDS mreD NC_010645.1 3449000 >3449506 R rod shape-determining protein complement(3449000..>3449506) Bordetella avium 197N 6267385 YP_787670.1 CDS mreC NC_010645.1 3449541 3450425 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(3449541..3450425) Bordetella avium 197N 6267388 YP_787671.1 CDS envB NC_010645.1 3450510 3451553 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(3450510..3451553) Bordetella avium 197N 6267387 YP_787672.1 CDS gatC NC_010645.1 3451781 3452089 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 3451781..3452089 Bordetella avium 197N 6266927 YP_787673.1 CDS gatA NC_010645.1 3452093 3453625 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 3452093..3453625 Bordetella avium 197N 6267056 YP_787674.1 CDS gatB NC_010645.1 3453628 3455085 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 3453628..3455085 Bordetella avium 197N 6267054 YP_787675.1 CDS pyrE NC_010645.1 3455432 3456094 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(3455432..3456094) Bordetella avium 197N 6267055 YP_787676.1 CDS crc NC_010645.1 3456193 3456975 R catabolite repression control protein complement(3456193..3456975) Bordetella avium 197N 6267612 YP_787677.1 CDS gdhA NC_010645.1 3457467 3458804 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 3457467..3458804 Bordetella avium 197N 6266811 YP_787678.1 CDS BAV3183 NC_010645.1 3458856 3459428 R membrane protein complement(3458856..3459428) Bordetella avium 197N 6267064 YP_787679.1 CDS BAV3184 NC_010645.1 3459622 3460476 D universal stress protein 3459622..3460476 Bordetella avium 197N 6266421 YP_787680.1 CDS ampG NC_010645.1 3460478 >3461692 R muropeptide transporter complement(3460478..>3461692) Bordetella avium 197N 6266422 YP_787681.1 CDS metW NC_010645.1 3461806 3462417 R methionine biosynthesis protein complement(3461806..3462417) Bordetella avium 197N 6266626 YP_787682.1 CDS metX NC_010645.1 3462414 3463661 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(3462414..3463661) Bordetella avium 197N 6267345 YP_787683.1 CDS gshA NC_010645.1 <3464073 3465659 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase <3464073..3465659 Bordetella avium 197N 6267346 YP_787684.1 CDS BAV3189 NC_010645.1 3465693 3466211 D This CDS does not exhibit a typical prokaryotic lipoprotein signal peptide.; Also similar to BAV0354 (36.6 38d); hypothetical protein 3465693..3466211 Bordetella avium 197N 6267121 YP_787685.1 CDS BAV3190 NC_010645.1 3466445 3467374 D LysR family transcriptional regulator 3466445..3467374 Bordetella avium 197N 6266423 YP_787686.1 CDS BAV3191 NC_010645.1 <3467506 3468276 D Partial CDS. Similar to the C-terminal region of many methyl-accepting chemotaxis proteins.; methyl-accepting chemotaxis protein (partial) <3467506..3468276 Bordetella avium 197N 6266424 YP_787687.1 CDS BAV3192 NC_010645.1 3468851 3469282 D Truncated at N-terminus relative its orthologue in B. bronchiseptica.; cytochrome C 3468851..3469282 Bordetella avium 197N 6267842 YP_787688.1 CDS dcaH NC_010645.1 3469342 3470850 R converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxy-acyl-CoA dehydrogenase complement(3469342..3470850) Bordetella avium 197N 6266426 YP_787689.1 CDS BAV3194 NC_010645.1 3470886 3472112 R CoA-transferase complement(3470886..3472112) Bordetella avium 197N 6266866 YP_787690.1 CDS dcaA NC_010645.1 3472221 3473366 R acyl-CoA dehydrogenase complement(3472221..3473366) Bordetella avium 197N 6266427 YP_787691.1 CDS BAV3196 NC_010645.1 3473372 3474004 R TetR family transcriptional regulator complement(3473372..3474004) Bordetella avium 197N 6266864 YP_787692.1 CDS BAV3197 NC_010645.1 3474135 3475115 D 2-nitropropane dioxygenase 3474135..3475115 Bordetella avium 197N 6266428 YP_787693.1 CDS dcaE NC_010645.1 3475112 3475846 D enoyl-CoA hydratase 3475112..3475846 Bordetella avium 197N 6266429 YP_787694.1 CDS BAV3199 NC_010645.1 3475855 3476670 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3475855..3476670) Bordetella avium 197N 6266865 YP_787695.1 CDS BAV3200 NC_010645.1 3476749 3477630 D hypothetical protein 3476749..3477630 Bordetella avium 197N 6266430 YP_787696.1 CDS BAV3201 NC_010645.1 3477721 3477954 D . Seems to be unique to the bordetellae.; hypothetical protein 3477721..3477954 Bordetella avium 197N 6266431 YP_787697.1 CDS BAV3202 NC_010645.1 3478213 3479838 D ABC transporter substrate-binding protein 3478213..3479838 Bordetella avium 197N 6266432 YP_787698.1 CDS BAV3203 NC_010645.1 <3480129 3481106 D ABC transporter permease <3480129..3481106 Bordetella avium 197N 6266433 YP_787699.1 CDS BAV3204 NC_010645.1 3481115 3482035 D ABC transporter permease 3481115..3482035 Bordetella avium 197N 6266434 YP_787700.1 CDS BAV3205 NC_010645.1 3482032 3483009 D ABC transporter ATP-binding protein 3482032..3483009 Bordetella avium 197N 6266435 YP_787701.1 CDS BAV3206 NC_010645.1 3483006 3484016 D ABC transporter ATP-binding protein 3483006..3484016 Bordetella avium 197N 6266436 YP_787702.1 CDS BAV3207 NC_010645.1 3484019 3484924 D poly(aspartic acid) Hydrolase 3484019..3484924 Bordetella avium 197N 6266437 YP_787703.1 CDS BAV3208 NC_010645.1 3484950 3486080 D amidohydrolase/peptidase 3484950..3486080 Bordetella avium 197N 6266438 YP_787704.1 CDS rep NC_010645.1 3486379 3488433 R ATP-dependent DNA helicase complement(3486379..3488433) Bordetella avium 197N 6266439 YP_787705.1 CDS priA NC_010645.1 3488486 3490534 R primosomal protein N' complement(3488486..3490534) Bordetella avium 197N 6267638 YP_787706.1 CDS hemE NC_010645.1 3490861 >3491931 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(3490861..>3491931) Bordetella avium 197N 6267570 YP_787707.1 CDS BAV3212 NC_010645.1 3492008 3492808 R . Seems to be unique to the bordetellae.; hypothetical protein complement(3492008..3492808) Bordetella avium 197N 6267155 YP_787708.1 CDS atpC NC_010645.1 3492991 3493416 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(3492991..3493416) Bordetella avium 197N 6266440 YP_787709.1 CDS atpD NC_010645.1 3493426 3494826 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(3493426..3494826) Bordetella avium 197N 6266679 YP_787710.1 CDS atpG NC_010645.1 3494864 3495769 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(3494864..3495769) Bordetella avium 197N 6266680 YP_787711.1 CDS atpA NC_010645.1 3495868 3497409 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(3495868..3497409) Bordetella avium 197N 6266683 YP_787712.1 CDS atpH NC_010645.1 3497447 3497986 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(3497447..3497986) Bordetella avium 197N 6266677 YP_787713.1 CDS atpF NC_010645.1 3497999 >3498469 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(3497999..>3498469) Bordetella avium 197N 6266684 YP_787714.1 CDS atpE NC_010645.1 3498599 3498841 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(3498599..3498841) Bordetella avium 197N 6266682 YP_787715.1 CDS atpB NC_010645.1 3498957 3499838 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(3498957..3499838) Bordetella avium 197N 6266681 YP_787716.1 CDS atpI NC_010645.1 3499905 3500249 R ATP synthase complement(3499905..3500249) Bordetella avium 197N 6266678 YP_787717.1 CDS BAV3222 NC_010645.1 3500708 3501484 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3500708..3501484) Bordetella avium 197N 6266685 YP_787718.1 CDS BAV3223 NC_010645.1 3501521 3503284 D signaling protein 3501521..3503284 Bordetella avium 197N 6266441 YP_787719.1 CDS BAV3224 NC_010645.1 3503294 3504181 R thioredoxin reductase complement(3503294..3504181) Bordetella avium 197N 6266442 YP_787720.1 CDS folB NC_010645.1 3504303 3504662 D dihydroneopterin aldolase 3504303..3504662 Bordetella avium 197N 6266443 YP_787721.1 CDS BAV3226 NC_010645.1 3504665 3505612 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 3504665..3505612 Bordetella avium 197N 6267025 YP_787722.1 CDS BAV3227 NC_010645.1 3505605 3506342 R hypothetical protein complement(3505605..3506342) Bordetella avium 197N 6266444 YP_787723.1 CDS BAV3228 NC_010645.1 3506668 3507621 R D-isomer specific 2-hydroxyacid dehydrogenase complement(3506668..3507621) Bordetella avium 197N 6266445 YP_787724.1 CDS dsbC NC_010645.1 3507657 3508490 R thiol:disulfide interchange protein complement(3507657..3508490) Bordetella avium 197N 6266446 YP_787725.1 CDS visC NC_010645.1 3508517 3509680 R Also similar to BAV2773 (29.3 38d); ubiquinone biosynthesis hydroxylase family protein complement(3508517..3509680) Bordetella avium 197N 6266905 YP_787726.1 CDS mltA NC_010645.1 3509677 3510957 R membrane-bound lytic murein transglycosylase complement(3509677..3510957) Bordetella avium 197N 6267928 YP_787727.1 CDS apaG NC_010645.1 3510969 3511343 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(3510969..3511343) Bordetella avium 197N 6267358 YP_787728.1 CDS cbbeP NC_010645.1 3511459 3512184 D ribulose-phosphate 3-epimerase 3511459..3512184 Bordetella avium 197N 6266630 YP_787729.1 CDS cbbzC NC_010645.1 3512192 3512884 D phosphoglycolate phosphatase 3512192..3512884 Bordetella avium 197N 6266763 YP_787730.1 CDS trpE NC_010645.1 3513124 3514644 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 3513124..3514644 Bordetella avium 197N 6266764 YP_787731.1 CDS BAV3236 NC_010645.1 3514701 3515165 R hypothetical protein complement(3514701..3515165) Bordetella avium 197N 6267896 YP_787732.1 CDS BAV3237 NC_010645.1 3515172 3515435 R hypothetical protein complement(3515172..3515435) Bordetella avium 197N 6266447 YP_787733.1 CDS csiD NC_010645.1 3515758 3516675 R in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein complement(3515758..3516675) Bordetella avium 197N 6266448 YP_787734.1 CDS BAV3239 NC_010645.1 3516758 3517696 D LysR family transcriptional regulator 3516758..3517696 Bordetella avium 197N 6266813 YP_787735.1 CDS BAV3240 NC_010645.1 3517811 3518506 R GntR family transcriptional regulator complement(3517811..3518506) Bordetella avium 197N 6266449 YP_787736.1 CDS BAV3241 NC_010645.1 3518607 3520367 R catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase complement(3518607..3520367) Bordetella avium 197N 6266450 YP_787737.1 CDS BAV3242 NC_010645.1 3520573 3520876 D Partial CDS. Similar to the C-terminal region of many transporters.; transporter (partial) join(3520573..3520707,3520709..3520876) Bordetella avium 197N 6266451 YP_787738.1 CDS BAV3243 NC_010645.1 3521264 3522499 R transporter complement(3521264..3522499) Bordetella avium 197N 6266452 YP_787739.1 CDS BAV3244 NC_010645.1 3522509 3523417 R hypothetical protein complement(3522509..3523417) Bordetella avium 197N 6266453 YP_787740.1 CDS BAV3245 NC_010645.1 3523488 >3526133 R ; Also similar to BAV2768 (27.7 38d). Seems to be more similar to eukaryotic plasma membrane ATPase.; plasma membrane-type ATPase complement(3523488..>3526133) Bordetella avium 197N 6266454 YP_787741.1 CDS BAV3246 NC_010645.1 3526407 3526640 D hypothetical protein 3526407..3526640 Bordetella avium 197N 6266455 YP_787742.1 CDS BAV3247 NC_010645.1 3526799 3528178 R cytochrome C subunit of gluconate dehydrogenase complement(3526799..3528178) Bordetella avium 197N 6266456 YP_787743.1 CDS BAV3248 NC_010645.1 3528198 3529964 R gluconate dehydrogenase subunit complement(3528198..3529964) Bordetella avium 197N 6266457 YP_787744.1 CDS BAV3249 NC_010645.1 3529981 3530736 R gluconate dehydrogenase subunit complement(3529981..3530736) Bordetella avium 197N 6266458 YP_787745.1 CDS BAV3250 NC_010645.1 3531132 3531506 R hypothetical protein complement(3531132..3531506) Bordetella avium 197N 6266459 YP_787746.1 CDS BAV3251 NC_010645.1 3531806 3531988 D hypothetical protein 3531806..3531988 Bordetella avium 197N 6266460 YP_787747.1 CDS BAV3252 NC_010645.1 <3532932 3533936 D hypothetical protein <3532932..3533936 Bordetella avium 197N 6266461 YP_787748.1 CDS BAV3253 NC_010645.1 3534094 3535032 D LysR family transcriptional regulator 3534094..3535032 Bordetella avium 197N 6266462 YP_787749.1 CDS BAV3254 NC_010645.1 3535093 3536490 R Also similar to BAV0956 (29.2 38d); reductase flavoprotein subunit complement(3535093..3536490) Bordetella avium 197N 6266463 YP_787750.1 CDS BAV3255 NC_010645.1 3536487 3537299 R racemase complement(3536487..3537299) Bordetella avium 197N 6266464 YP_787751.1 CDS BAV3256 NC_010645.1 3537325 3537933 R chorismatase hydrolase complement(3537325..3537933) Bordetella avium 197N 6266465 YP_787752.1 CDS BAV3257 NC_010645.1 3537976 3538737 R N-acylmannosamine 1-dehydrogenase complement(3537976..3538737) Bordetella avium 197N 6266466 YP_787753.1 CDS BAV3258 NC_010645.1 3538820 3540265 R Similarity to kstd2 is limited to the C-terminus; dehydrogenase complement(3538820..3540265) Bordetella avium 197N 6266467 YP_787754.1 CDS BAV3259 NC_010645.1 3540563 3541543 D hypothetical protein 3540563..3541543 Bordetella avium 197N 6266468 YP_787755.1 CDS BAV3260 NC_010645.1 <3541593 3543014 D hypothetical protein <3541593..3543014 Bordetella avium 197N 6266469 YP_787756.1 CDS BAV3261 NC_010645.1 3543088 3544008 D hypothetical protein 3543088..3544008 Bordetella avium 197N 6266470 YP_787757.1 CDS BAV3262 NC_010645.1 3544089 3545060 R electron transfer flavoprotein subunit alpha complement(3544089..3545060) Bordetella avium 197N 6266471 YP_787758.1 CDS BAV3263 NC_010645.1 3545057 3545848 R electron transfer flavoprotein subunit beta complement(3545057..3545848) Bordetella avium 197N 6266472 YP_787759.1 CDS BAV3264 NC_010645.1 <3546143 3547639 D catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase <3546143..3547639 Bordetella avium 197N 6266473 YP_787760.1 CDS etfB2 NC_010645.1 3547747 3548496 D Also similar to BAV1364 (81.9); electron transfer flavoprotein subunit beta 3547747..3548496 Bordetella avium 197N 6266474 YP_787761.1 CDS etfA2 NC_010645.1 3548517 3549449 D Also similar to BAV1365 (75.4); electron transfer flavoprotein subunit alpha 3548517..3549449 Bordetella avium 197N 6266937 YP_787762.1 CDS BAV3267 NC_010645.1 3549547 3550530 D hypothetical protein 3549547..3550530 Bordetella avium 197N 6266935 YP_787763.1 CDS bcpA NC_010645.1 3550533 3551393 D carboxyvinyl-carboxyphosphonate phosphorylmutase 3550533..3551393 Bordetella avium 197N 6266475 YP_787764.1 CDS BAV3269 NC_010645.1 3551896 3554583 D autotransporter 3551896..3554583 Bordetella avium 197N 6266689 YP_787765.1 CDS glmS NC_010645.1 3554692 3556524 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(3554692..3556524) Bordetella avium 197N 6266476 YP_787766.1 CDS BAV3271 NC_010645.1 3556673 3557161 D AsnC/Lrp family transcriptional regulator 3556673..3557161 Bordetella avium 197N 6267077 YP_787767.1 CDS BAV3272 NC_010645.1 3557162 3558217 R lipopolysaccharide core biosynthesis glycosyl transferase complement(3557162..3558217) Bordetella avium 197N 6266477 YP_787768.1 CDS rkpK NC_010645.1 3558214 3559536 R UDP-glucose 6-dehydrogenase complement(3558214..3559536) Bordetella avium 197N 6266478 YP_787769.1 CDS BAV3274 NC_010645.1 3559605 >3560975 R transporter complement(3559605..>3560975) Bordetella avium 197N 6267663 YP_787770.1 CDS glmU NC_010645.1 3560972 3562345 R bifunctional GlmU protein (includes UDP-N-acetylglucosamine pyrophosphorylase and glucosamine-1-phosphate n-acetyltransferase) complement(3560972..3562345) Bordetella avium 197N 6266479 YP_787771.1 CDS BAV3276 NC_010645.1 3562405 3563058 R regulatory protein complement(3562405..3563058) Bordetella avium 197N 6267078 YP_787772.1 CDS BAV3277 NC_010645.1 3563055 3563180 R hypothetical protein complement(3563055..3563180) Bordetella avium 197N 6266480 YP_787773.1 CDS BAV3278 NC_010645.1 3563288 3563503 D hypothetical protein 3563288..3563503 Bordetella avium 197N 6266481 YP_787774.1 CDS BAV3279 NC_010645.1 3563514 3564122 R electron transport protein complement(3563514..3564122) Bordetella avium 197N 6266482 YP_787775.1 CDS cyoE NC_010645.1 3564147 3565043 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(3564147..3565043) Bordetella avium 197N 6266483 YP_787776.1 CDS BAV3281 NC_010645.1 3565072 3566085 R cytochrome oxidase assembly protein complement(3565072..3566085) Bordetella avium 197N 6266838 YP_787777.1 CDS BAV3282 NC_010645.1 3566428 3567243 D NUDIX hydrolase 3566428..3567243 Bordetella avium 197N 6266484 YP_787778.1 CDS BAV3283 NC_010645.1 3567250 3569841 R sodium/hydrogen antiporter complement(3567250..3569841) Bordetella avium 197N 6266485 YP_787779.1 CDS cpdA NC_010645.1 3570019 3570831 D cAMP phosphodiesterase 3570019..3570831 Bordetella avium 197N 6266486 YP_787780.1 CDS fam NC_010645.1 3571171 3572094 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(3571171..3572094) Bordetella avium 197N 6266806 YP_787781.1 CDS BAV3286 NC_010645.1 3572196 3572663 R hypothetical protein complement(3572196..3572663) Bordetella avium 197N 6266952 YP_787782.1 CDS BAV3287 NC_010645.1 3572764 >3573453 R membrane protein complement(3572764..>3573453) Bordetella avium 197N 6266487 YP_787783.1 CDS BAV3288 NC_010645.1 3573512 3574351 R esterase complement(3573512..3574351) Bordetella avium 197N 6266488 YP_787784.1 CDS adhC NC_010645.1 3574353 3575459 R deleted EC_number 1.2.1.1; glutathione-dependent formaldehyde dehydrogenase complement(3574353..3575459) Bordetella avium 197N 6266489 YP_787785.1 CDS BAV3290 NC_010645.1 3575633 3576358 D hypothetical protein 3575633..3576358 Bordetella avium 197N 6266602 YP_787786.1 CDS aspB NC_010645.1 3576700 3581439 D glutamate synthase [NADPH] large chain 3576700..3581439 Bordetella avium 197N 6266490 YP_787787.1 CDS gltD NC_010645.1 3581448 3582914 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3581448..3582914 Bordetella avium 197N 6266670 YP_787788.1 CDS hyuB NC_010645.1 3583076 3584842 D hydantoin utilization protein B 3583076..3584842 Bordetella avium 197N 6266671 YP_787789.1 CDS hyuA NC_010645.1 3584853 3586937 D hydantoin hydantoinase A 3584853..3586937 Bordetella avium 197N 6267228 YP_787790.1 CDS BAV3295 NC_010645.1 3586987 3587943 D AraC family transcriptional regulator 3586987..3587943 Bordetella avium 197N 6267226 YP_787791.1 CDS BAV3296 NC_010645.1 3587944 3589260 R permease complement(3587944..3589260) Bordetella avium 197N 6266491 YP_787792.1 CDS BAV3297 NC_010645.1 3589447 3590439 R Also similar to BAV3097 (36.8 38d); urea amidolyase-like protein complement(3589447..3590439) Bordetella avium 197N 6266492 YP_787793.1 CDS BAV3298 NC_010645.1 3590429 3591304 R Also similar to BAV3096 (28.6 38d).; hypothetical protein complement(3590429..3591304) Bordetella avium 197N 6266493 YP_787794.1 CDS accC NC_010645.1 3591301 3592689 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(3591301..3592689) Bordetella avium 197N 6266494 YP_787795.1 CDS accB NC_010645.1 3592693 3592935 R Similarity to orthologues limited to C-terminal 73 aa; hypothetical protein complement(3592693..3592935) Bordetella avium 197N 6266577 YP_787796.1 CDS BAV3301 NC_010645.1 3592974 3593750 R Similar to the N-terminal 120 aa of Emericella nidulans lactam utilization protein LamB SWALL:LAMB_EMENI (SWALL:P38096) (262 aa).; hypothetical protein complement(3592974..3593750) Bordetella avium 197N 6266575 YP_787797.1 CDS BAV3302 NC_010645.1 3594008 3594907 D LysR family transcriptional regulator 3594008..3594907 Bordetella avium 197N 6266495 YP_787798.1 CDS ompW NC_010645.1 3595033 3595668 D outer membrane protein 3595033..3595668 Bordetella avium 197N 6266496 YP_787799.1 CDS BAV3304 NC_010645.1 3596048 3596884 D ABC transporter ATP-binding protein 3596048..3596884 Bordetella avium 197N 6267461 YP_787800.1 CDS BAV3305 NC_010645.1 3596881 3597669 D membrane protein 3596881..3597669 Bordetella avium 197N 6266497 YP_787801.1 CDS vpsC NC_010645.1 3597682 3598170 D virulence protein transporter 3597682..3598170 Bordetella avium 197N 6266498 YP_787802.1 CDS vacJ NC_010645.1 3598243 3599025 D intercellular spreading lipoprotein 3598243..3599025 Bordetella avium 197N 6267929 YP_787803.1 CDS BAV3308 NC_010645.1 3599056 3599682 D hypothetical protein 3599056..3599682 Bordetella avium 197N 6267925 YP_787804.1 CDS BAV3309 NC_010645.1 3599814 3600623 D ABC transporter ATP-binding protein 3599814..3600623 Bordetella avium 197N 6266499 YP_787805.1 CDS BAV3310 NC_010645.1 <3600620 3601417 D ABC transporter permease <3600620..3601417 Bordetella avium 197N 6266500 YP_787806.1 CDS BAV3311 NC_010645.1 3601421 3601666 D Also similar to BAV1074 (37.6 38d).; BolA-like protein 3601421..3601666 Bordetella avium 197N 6266501 YP_787807.1 CDS murA NC_010645.1 3601666 3602931 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3601666..3602931 Bordetella avium 197N 6266502 YP_787808.1 CDS hisG NC_010645.1 3602928 3603611 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 3602928..3603611 Bordetella avium 197N 6267399 YP_787809.1 CDS hisD NC_010645.1 3603621 3604928 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 3603621..3604928 Bordetella avium 197N 6267177 YP_787810.1 CDS hisC3 NC_010645.1 3604925 3606016 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 3604925..3606016 Bordetella avium 197N 6267174 YP_787811.1 CDS hisB NC_010645.1 3606018 3606605 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 3606018..3606605 Bordetella avium 197N 6267173 YP_787812.1 CDS hisH NC_010645.1 3606622 3607308 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 3606622..3607308 Bordetella avium 197N 6267170 YP_787813.1 CDS hisA NC_010645.1 3607372 3608112 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 3607372..3608112 Bordetella avium 197N 6267178 YP_787814.1 CDS hisF NC_010645.1 3608109 3608912 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 3608109..3608912 Bordetella avium 197N 6267169 YP_787815.1 CDS hisI NC_010645.1 3608915 3609319 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 3608915..3609319 Bordetella avium 197N 6267176 YP_787816.1 CDS hisE NC_010645.1 3609316 3609666 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 3609316..3609666 Bordetella avium 197N 6267179 YP_787817.1 CDS BAV3322 NC_010645.1 3609675 3610043 D hypothetical protein 3609675..3610043 Bordetella avium 197N 6267175 YP_787818.1 CDS tatA NC_010645.1 3610059 3610274 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 3610059..3610274 Bordetella avium 197N 6266503 YP_787819.1 CDS tatB NC_010645.1 3610326 3610823 D Sec-independent protein translocase protein TatB 3610326..3610823 Bordetella avium 197N 6267789 YP_787820.1 CDS tatC NC_010645.1 <3610820 3611605 D Sec-independent protein translocase protein TatC <3610820..3611605 Bordetella avium 197N 6267790 YP_787821.1 CDS degQ NC_010645.1 3611633 3612691 R protease complement(3611633..3612691) Bordetella avium 197N 6267791 YP_787822.1 CDS BAV3327 NC_010645.1 3612783 3613559 D hypothetical protein 3612783..3613559 Bordetella avium 197N 6266877 YP_787823.1 CDS mscL NC_010645.1 3613573 3614019 R homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(3613573..3614019) Bordetella avium 197N 6266504 YP_787824.1 CDS petA NC_010645.1 3614161 3614802 D ubiquinol-cytochrome C reductase iron-sulfur subunit 3614161..3614802 Bordetella avium 197N 6267391 YP_787825.1 CDS petB NC_010645.1 3614853 3616256 D cytochrome B 3614853..3616256 Bordetella avium 197N 6267503 YP_787826.1 CDS petC NC_010645.1 3616253 3617083 D cytochrome C 3616253..3617083 Bordetella avium 197N 6267504 YP_787827.1 CDS ssp NC_010645.1 3617231 3617842 D stringent starvation protein 3617231..3617842 Bordetella avium 197N 6267505 YP_787828.1 CDS sspB NC_010645.1 3617851 3618288 D ClpXP protease specificity-enhancing factor 3617851..3618288 Bordetella avium 197N 6267773 YP_787829.1 CDS BAV3334 NC_010645.1 3618576 3618911 D membrane protein 3618576..3618911 Bordetella avium 197N 6267886 YP_787830.1 CDS BAV3335 NC_010645.1 3619351 3620727 D membrane protein 3619351..3620727 Bordetella avium 197N 6267846 YP_787831.1 CDS BAV3336 NC_010645.1 3620720 3622114 D hypothetical protein 3620720..3622114 Bordetella avium 197N 6266506 YP_787832.1 CDS BAV3337 NC_010645.1 3622348 3623952 D ABC transporter substrate-binding protein 3622348..3623952 Bordetella avium 197N 6266507 YP_787833.1 CDS BAV3338 NC_010645.1 3624035 3625006 D ABC transporter permease 3624035..3625006 Bordetella avium 197N 6266508 YP_787834.1 CDS BAV3339 NC_010645.1 3625015 3625941 D ABC transporter permease 3625015..3625941 Bordetella avium 197N 6266509 YP_787835.1 CDS BAV3340 NC_010645.1 3625951 3627681 D ABC transporter ATP-binding protein 3625951..3627681 Bordetella avium 197N 6266510 YP_787836.1 CDS BAV3341 NC_010645.1 3627687 >3628460 R membrane protein complement(3627687..>3628460) Bordetella avium 197N 6266511 YP_787837.1 CDS BAV3342 NC_010645.1 3628519 3629133 R lipoprotein complement(3628519..3629133) Bordetella avium 197N 6266512 YP_787838.1 CDS rhlE NC_010645.1 3629392 3630825 D ATP-dependent RNA helicase 3629392..3630825 Bordetella avium 197N 6266513 YP_787839.1 CDS BAV3344 NC_010645.1 3630847 3631476 D amino acid efflux protein 3630847..3631476 Bordetella avium 197N 6267650 YP_787840.1 CDS prfC NC_010645.1 3631502 3633109 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 3631502..3633109 Bordetella avium 197N 6266514 YP_787841.1 CDS BAV3346 NC_010645.1 3633146 3633811 D . Seems to be unique to the bordetellae.; hypothetical protein 3633146..3633811 Bordetella avium 197N 6267352 YP_787842.1 CDS bfr NC_010645.1 3633884 3634360 R bacterioferritin complement(3633884..3634360) Bordetella avium 197N 6266515 YP_787843.1 CDS bfd NC_010645.1 3634868 3635164 D bacterioferritin-associated ferredoxin 3634868..3635164 Bordetella avium 197N 6266705 YP_787844.1 CDS glnF NC_010645.1 3635225 3636646 R RNA polymerase sigma-54 factor complement(3635225..3636646) Bordetella avium 197N 6266701 YP_787845.1 CDS BAV3350 NC_010645.1 3636645 3637280 D . Seems to be unique to the bordetellae.; membrane protein 3636645..3637280 Bordetella avium 197N 6267083 YP_787846.1 CDS leuA2 NC_010645.1 3637637 3639346 D Also similar to BAV1174 (55.3 38d.).; 2-isopropylmalate synthase 3637637..3639346 Bordetella avium 197N 6266516 YP_787847.1 CDS BAV3352 NC_010645.1 3639426 3640715 R amidase complement(3639426..3640715) Bordetella avium 197N 6267287 YP_787848.1 CDS BAV3353 NC_010645.1 3640928 3641962 D LacI family transcriptional regulator 3640928..3641962 Bordetella avium 197N 6266517 YP_787849.1 CDS BAV3354 NC_010645.1 3641983 3642981 D ABC transporter substrate-binding protein 3641983..3642981 Bordetella avium 197N 6266518 YP_787850.1 CDS BAV3355 NC_010645.1 3642981 3643790 D ABC transporter permease 3642981..3643790 Bordetella avium 197N 6266519 YP_787851.1 CDS BAV3356 NC_010645.1 3643792 3644586 D ABC transporter permease 3643792..3644586 Bordetella avium 197N 6266520 YP_787852.1 CDS BAV3357 NC_010645.1 3644583 3645569 D ABC transporter ATP-binding protein 3644583..3645569 Bordetella avium 197N 6266521 YP_787853.1 CDS BAV3358 NC_010645.1 3645586 3646401 D phosphohydrolase 3645586..3646401 Bordetella avium 197N 6266522 YP_787854.1 CDS BAV3359 NC_010645.1 3646576 3646893 R . Seems to be unique to the bordetellae.; hypothetical protein complement(3646576..3646893) Bordetella avium 197N 6266523 YP_787855.1 CDS BAV3360 NC_010645.1 3646976 3647317 R hypothetical protein complement(3646976..3647317) Bordetella avium 197N 6266524 YP_787856.1 CDS argS NC_010645.1 3647501 3649186 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 3647501..3649186 Bordetella avium 197N 6266525 YP_787857.1 CDS BAV3362 NC_010645.1 3649195 3649878 D hypothetical protein 3649195..3649878 Bordetella avium 197N 6266652 YP_787858.1 CDS dsbA NC_010645.1 3649940 3650569 D thiol:disulfide interchange protein 3649940..3650569 Bordetella avium 197N 6266526 YP_787859.1 CDS rtn NC_010645.1 3650673 3652235 D signaling protein 3650673..3652235 Bordetella avium 197N 6266903 YP_787860.1 CDS metC NC_010645.1 3652240 3653430 R Previously sequenced as Bordetella avium cystathionine beta-lyase metC SWALL:METC_BORAV (SWALL:Q07703) (395 aa).; cystathionine beta-lyase complement(3652240..3653430) Bordetella avium 197N 6267735 YP_787861.1 CDS BAV3366 NC_010645.1 3653572 3654198 D amino acid efflux protein 3653572..3654198 Bordetella avium 197N 6267334 YP_787862.1 CDS BAV3367 NC_010645.1 3654222 3655283 R metallo-beta-lactamase family protein complement(3654222..3655283) Bordetella avium 197N 6266527 YP_787863.1 CDS BAV3368 NC_010645.1 3655356 3655736 D MerR family transcriptional regulator 3655356..3655736 Bordetella avium 197N 6266528 YP_787864.1 CDS ivd NC_010645.1 3655855 3657033 D isovaleryl-CoA dehydrogenase 3655855..3657033 Bordetella avium 197N 6266529 YP_787865.1 CDS BAV3370 NC_010645.1 3657150 3658331 D acetyl-CoA acetyltransferase 3657150..3658331 Bordetella avium 197N 6267259 YP_787866.1 CDS BAV3371 NC_010645.1 3658421 3660028 D methylcrotonyl-CoA carboxylase beta chain 3658421..3660028 Bordetella avium 197N 6266530 YP_787867.1 CDS BAV3372 NC_010645.1 <3660054 3662060 D methylcrotonyl-CoA carboxylase subunit alpha <3660054..3662060 Bordetella avium 197N 6266531 YP_787868.1 CDS BAV3373 NC_010645.1 3662107 3662352 R hypothetical protein complement(3662107..3662352) Bordetella avium 197N 6266532 YP_787869.1 CDS argD NC_010645.1 3662412 3663602 R DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein complement(3662412..3663602) Bordetella avium 197N 6266533 YP_787870.1 CDS BAV3375 NC_010645.1 3663721 3664734 R low-specificity D-threonine aldolase complement(3663721..3664734) Bordetella avium 197N 6266651 YP_787871.1 CDS hemC NC_010645.1 3665195 3667429 D TonB-dependent heme receptor 3665195..3667429 Bordetella avium 197N 6266534 YP_787872.1 CDS BAV3377 NC_010645.1 3667576 3668034 D hypothetical protein 3667576..3668034 Bordetella avium 197N 6267153 YP_787873.1 CDS BAV3378 NC_010645.1 3668084 3668959 D Also similar to BAV2977 (34.9 38d); glutamyl-tRNA synthetase 3668084..3668959 Bordetella avium 197N 6266535 YP_787874.1 CDS BAV3379 NC_010645.1 3668956 3671514 R membrane protein complement(3668956..3671514) Bordetella avium 197N 6266536 YP_787875.1 CDS topB NC_010645.1 3671578 3674214 D decatenates replicating daughter chromosomes; DNA topoisomerase III 3671578..3674214 Bordetella avium 197N 6266537 YP_787876.1 CDS BAV3381 NC_010645.1 3674349 3675398 D ABC transporter substrate-binding protein 3674349..3675398 Bordetella avium 197N 6267821 YP_787877.1 CDS BAV3382 NC_010645.1 3675395 3676168 D ABC transporter ATP-binding protein 3675395..3676168 Bordetella avium 197N 6266538 YP_787878.1 CDS BAV3383 NC_010645.1 3676180 3677034 D ABC transporter permease 3676180..3677034 Bordetella avium 197N 6266539 YP_787879.1 CDS idnO NC_010645.1 3677034 3677834 D Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 3677034..3677834 Bordetella avium 197N 6266540 YP_787880.1 CDS fabG NC_010645.1 3679297 3680055 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 3679297..3680055 Bordetella avium 197N 6266541 YP_787881.1 CDS ilvI2 NC_010645.1 3680065 3681879 R Also similar to BAV2673 (46.528 38d); acetolactate synthase isozyme III large subunit complement(3680065..3681879) Bordetella avium 197N 6266542 YP_787882.1 CDS BAV3388 NC_010645.1 3681973 3682455 D AsnC/Lrp family transcriptional regulator 3681973..3682455 Bordetella avium 197N 6267242 YP_787883.1 CDS BAV3389 NC_010645.1 3682440 3683366 R membrane protein complement(3682440..3683366) Bordetella avium 197N 6266543 YP_787884.1 CDS BAV3390 NC_010645.1 3683496 3684008 D hypothetical protein 3683496..3684008 Bordetella avium 197N 6266544 YP_787885.1 CDS ribB NC_010645.1 3684351 3685037 D DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3684351..3685037 Bordetella avium 197N 6267963 YP_787886.1 CDS BAV3392 NC_010645.1 3685048 3685539 R nucleoside 2-deoxyribosyltransferase complement(3685048..3685539) Bordetella avium 197N 6267220 YP_787887.1 CDS BAV3393 NC_010645.1 3685554 3686009 R hypothetical protein complement(3685554..3686009) Bordetella avium 197N 6266546 YP_787888.1 CDS BAV3394 NC_010645.1 3686104 3687024 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(3686104..3687024) Bordetella avium 197N 6266547 YP_787889.1 CDS BAV3395 NC_010645.1 3687396 3688409 D ABC transporter substrate-binding protein 3687396..3688409 Bordetella avium 197N 6266548 YP_787890.1 CDS BAV3396 NC_010645.1 3688406 3689935 D ABC transporter ATP-binding protein 3688406..3689935 Bordetella avium 197N 6266549 YP_787891.1 CDS BAV3397 NC_010645.1 3689932 3691005 D ABC transporter permease 3689932..3691005 Bordetella avium 197N 6266550 YP_787892.1 CDS BAV3398 NC_010645.1 3691016 3691960 D ABC transporter permease 3691016..3691960 Bordetella avium 197N 6266551 YP_787893.1 CDS codA NC_010645.1 3691976 3693253 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 3691976..3693253 Bordetella avium 197N 6266552 YP_787894.1 CDS BAV3400 NC_010645.1 3693288 3694127 R AraC family transcriptional regulator complement(3693288..3694127) Bordetella avium 197N 6266801 YP_787895.1 CDS lctD NC_010645.1 3694199 3695362 R L-lactate dehydrogenase complement(3694199..3695362) Bordetella avium 197N 6266553 YP_787896.1 CDS BAV3402 NC_010645.1 3695537 3695821 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 3695537..3695821 Bordetella avium 197N 6267281 YP_787897.1 CDS BAV3403 NC_010645.1 3696024 3697334 R dehydrogenase, cytochrome C subunit complement(3696024..3697334) Bordetella avium 197N 6266554 YP_787898.1 CDS BAV3404 NC_010645.1 3697331 3697876 R dehydrogenase, iron-sulfur binding subunit complement(3697331..3697876) Bordetella avium 197N 6266555 YP_787899.1 CDS BAV3405 NC_010645.1 3697873 >3700707 R dehydrogenase, molybdenum binding subunit complement(3697873..>3700707) Bordetella avium 197N 6266556 YP_787900.1 CDS BAV3406 NC_010645.1 3701011 3701619 R hypothetical protein complement(3701011..3701619) Bordetella avium 197N 6266557 YP_787901.1 CDS BAV3407 NC_010645.1 3701696 3702685 D hypothetical protein 3701696..3702685 Bordetella avium 197N 6266558 YP_787902.1 CDS rtcB NC_010645.1 3702854 3704080 R hypothetical protein complement(3702854..3704080) Bordetella avium 197N 6266559 YP_787903.1 CDS rtcR NC_010645.1 3704368 3705972 D transcriptional regulator 3704368..3705972 Bordetella avium 197N 6267732 YP_787904.1 CDS gyrB NC_010645.1 3706184 3708637 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(3706184..3708637) Bordetella avium 197N 6267733 YP_787905.1 CDS dnaN NC_010645.1 3708720 3709835 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(3708720..3709835) Bordetella avium 197N 6267141 YP_787906.1 CDS dnaA NC_010645.1 3709832 3711283 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(3709832..3711283) Bordetella avium 197N 6266895 YP_787907.1 CDS rpmH NC_010645.1 3711798 3711932 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 3711798..3711932 Bordetella avium 197N 6266887 YP_787908.1 CDS rnpA NC_010645.1 3712053 3712415 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 3712053..3712415 Bordetella avium 197N 6267658 YP_787909.1 CDS BAV3415 NC_010645.1 3712412 3712696 D hypothetical protein 3712412..3712696 Bordetella avium 197N 6267670 YP_787910.1 CDS oxaA NC_010645.1 3712745 3714424 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 3712745..3714424 Bordetella avium 197N 6266560 YP_787911.1 CDS katG NC_010645.1 3714524 3716848 R catalase-peroxidase complement(3714524..3716848) Bordetella avium 197N 6267465 YP_787912.1 CDS BAV3418 NC_010645.1 3717500 3718699 R Also similar to several including BAV2859 (55.4 id.); amidohydrolase/peptidase complement(3717500..3718699) Bordetella avium 197N 6267261 YP_787913.1 CDS trmE NC_010645.1 3718864 3720216 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 3718864..3720216 Bordetella avium 197N 6266561 YP_787914.1 CDS BAV3420 NC_010645.1 3720501 3722594 D prolyl endopeptidase 3720501..3722594 Bordetella avium 197N 6267364 YP_787915.1 CDS BAV3421 NC_010645.1 3722608 >3723567 R LysR family regulatory protein complement(3722608..>3723567) Bordetella avium 197N 6266562 YP_787916.1 CDS maeB2 NC_010645.1 3723726 3726020 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 3723726..3726020 Bordetella avium 197N 6266563 YP_787917.1 CDS BAV3423 NC_010645.1 3729216 3730382 R catalyzes the transfer of an amino moiety; putative aminotransferase complement(3729216..3730382) Bordetella avium 197N 6267325 YP_787918.1 CDS cspC NC_010645.1 3730788 3730994 D Also similar to BAV1492 , BAV1494, BAV2092 and BAV2327.; cold shock protein 3730788..3730994 Bordetella avium 197N 6266564 YP_787919.1 CDS BAV3425 NC_010645.1 <3731179 3731391 D hypothetical protein <3731179..3731391 Bordetella avium 197N 6266817 YP_787920.1 CDS BAV3426 NC_010645.1 3731807 3731935 D hypothetical protein 3731807..3731935 Bordetella avium 197N 6266565 BAVt01 tRNA tRNA-Tyr(GTA) NC_010645.1 5439 5522 D tRNA-Tyr 5439..5522 Bordetella avium 197N 6266629 BAVt02 tRNA tRNA-Gly(TCC) NC_010645.1 5642 5712 D tRNA-Gly 5642..5712 Bordetella avium 197N 6267888 BAVt03 tRNA tRNA-Thr(GGT) NC_010645.1 5719 5790 D tRNA-Thr 5719..5790 Bordetella avium 197N 6267859 BAVt04 tRNA tRNA-Trp(CCA) NC_010645.1 7199 7271 D tRNA-Trp 7199..7271 Bordetella avium 197N 6267903 BAVt05 tRNA tRNA-Pro(CGG) NC_010645.1 267998 268071 D tRNA-Pro 267998..268071 Bordetella avium 197N 6266769 BAVt06 tRNA tRNA-Phe(GAA) NC_010645.1 309251 309323 R tRNA-Phe complement(309251..309323) Bordetella avium 197N 6264630 BAVt07 tRNA tRNA-Leu(CAA) NC_010645.1 443684 443768 R tRNA-Leu complement(443684..443768) Bordetella avium 197N 6264748 BAVt08 tRNA tRNA-Gly(CCC) NC_010645.1 455847 455917 D tRNA-Gly 455847..455917 Bordetella avium 197N 6267949 BAVt09 tRNA tRNA-Gln(TTG) NC_010645.1 558750 558823 D tRNA-Gln 558750..558823 Bordetella avium 197N 6267255 BAVt10 tRNA tRNA-Asp(GTC) NC_010645.1 876772 876845 R tRNA-Asp complement(876772..876845) Bordetella avium 197N 6265008 BAVt11 tRNA tRNA-Glu(TTC) NC_010645.1 876887 876959 R tRNA-Glu complement(876887..876959) Bordetella avium 197N 6267849 BAVt12 tRNA tRNA-Ala(GGC) NC_010645.1 876987 877059 R tRNA-Ala complement(876987..877059) Bordetella avium 197N 6267854 BAVt13 tRNA tRNA-Asp(GTC) NC_010645.1 877347 877420 R tRNA-Asp complement(877347..877420) Bordetella avium 197N 6267834 BAVt14 tRNA tRNA-Glu(TTC) NC_010645.1 877462 877534 R tRNA-Glu complement(877462..877534) Bordetella avium 197N 6267850 BAVt15 tRNA tRNA-Ala(GGC) NC_010645.1 877562 877634 R tRNA-Ala complement(877562..877634) Bordetella avium 197N 6267855 BAVt16 tRNA tRNA-Ala(GGC) NC_010645.1 885428 885500 D tRNA-Ala 885428..885500 Bordetella avium 197N 6265013 BAVt17 tRNA tRNA-Glu(TTC) NC_010645.1 885527 885599 D tRNA-Glu 885527..885599 Bordetella avium 197N 6267833 BAVt18 tRNA tRNA-Asp(GTC) NC_010645.1 885641 885714 D tRNA-Asp 885641..885714 Bordetella avium 197N 6267853 BAVt19 tRNA tRNA-Arg(CCT) NC_010645.1 962825 962896 D tRNA-Arg 962825..962896 Bordetella avium 197N 6265055 BAVt20 tRNA tRNA-Pro(TGG) NC_010645.1 1013977 1014050 D tRNA-Pro 1013977..1014050 Bordetella avium 197N 6267533 BAVt21 tRNA tRNA-Arg(TCT) NC_010645.1 1380215 1380288 R tRNA-Arg complement(1380215..1380288) Bordetella avium 197N 6265286 BAVt22 tRNA tRNA-Leu(TAG) NC_010645.1 1496530 1496613 D tRNA-Leu 1496530..1496613 Bordetella avium 197N 6266857 BAVt23 tRNA tRNA-Ala(CGC) NC_010645.1 1703522 1703594 R tRNA-Ala complement(1703522..1703594) Bordetella avium 197N 6265534 BAVt24 tRNA tRNA-Pro(GGG) NC_010645.1 2204171 2204244 R tRNA-Pro complement(2204171..2204244) Bordetella avium 197N 6265781 BAVt25 tRNA tRNA-Val(TAC) NC_010645.1 2268322 2268394 R tRNA-Val complement(2268322..2268394) Bordetella avium 197N 6267820 BAVt26 tRNA tRNA-Leu(CAG) NC_010645.1 2273831 2273912 D tRNA-Leu 2273831..2273912 Bordetella avium 197N 6267671 BAVt27 tRNA tRNA-Leu(CAG) NC_010645.1 2274782 2274863 D tRNA-Leu 2274782..2274863 Bordetella avium 197N 6265807 BAVt28 tRNA tRNA-Leu(CAG) NC_010645.1 2275016 2275097 D tRNA-Leu 2275016..2275097 Bordetella avium 197N 6267866 BAVt29 tRNA tRNA-Met(CAT) NC_010645.1 2281839 2281912 D tRNA-Met 2281839..2281912 Bordetella avium 197N 6265812 BAVt30 tRNA tRNA-Ala(TGC) NC_010645.1 2397981 2398053 R tRNA-Ala complement(2397981..2398053) Bordetella avium 197N 6267954 BAVt31 tRNA tRNA-Ile(GAT) NC_010645.1 2398064 2398137 R tRNA-Ile complement(2398064..2398137) Bordetella avium 197N 6267836 BAVt32 tRNA tRNA-Val(GAC) NC_010645.1 2442015 2442088 R tRNA-Val complement(2442015..2442088) Bordetella avium 197N 6267795 BAVt33 tRNA tRNA-Met(CAT) NC_010645.1 2500553 2500626 R tRNA-Met complement(2500553..2500626) Bordetella avium 197N 6265914 BAVt34 tRNA tRNA-Met(CAT) NC_010645.1 2507316 2507391 R tRNA-Met complement(2507316..2507391) Bordetella avium 197N 6265923 BAVt35 tRNA tRNA-Met(CAT) NC_010645.1 2592127 2592200 D tRNA-Met 2592127..2592200 Bordetella avium 197N 6265952 BAVt36 tRNA tRNA-Asn(GTT) NC_010645.1 2594198 2594270 R tRNA-Asn complement(2594198..2594270) Bordetella avium 197N 6265954 BAVt37 tRNA tRNA-Thr(CGT) NC_010645.1 2594464 2594536 R tRNA-Thr complement(2594464..2594536) Bordetella avium 197N 6267847 BAVt38 tRNA tRNA-Ala(TGC) NC_010645.1 2699183 2699255 R tRNA-Ala complement(2699183..2699255) Bordetella avium 197N 6267957 BAVt39 tRNA tRNA-Ile(GAT) NC_010645.1 2699266 2699339 R tRNA-Ile complement(2699266..2699339) Bordetella avium 197N 6267837 BAVt40 tRNA tRNA-Arg(ACG) NC_010645.1 2766392 2766465 R tRNA-Arg complement(2766392..2766465) Bordetella avium 197N 6266058 BAVt41 tRNA tRNA-Arg(ACG) NC_010645.1 2768227 2768300 R tRNA-Arg complement(2768227..2768300) Bordetella avium 197N 6266059 BAVt42 tRNA tRNA-Arg(ACG) NC_010645.1 2768438 2768511 R tRNA-Arg complement(2768438..2768511) Bordetella avium 197N 6267840 BAVt43 tRNA tRNA-Ser(GCT) NC_010645.1 2768770 2768859 R tRNA-Ser complement(2768770..2768859) Bordetella avium 197N 6267841 BAVt44 tRNA tRNA-His(GTG) NC_010645.1 2811698 2811770 R tRNA-His complement(2811698..2811770) Bordetella avium 197N 6266094 BAVt45 tRNA tRNA-Arg(TCT) NC_010645.1 2815208 2815281 R tRNA-Arg complement(2815208..2815281) Bordetella avium 197N 6266096 BAVt46 tRNA tRNA-Leu(GAG) NC_010645.1 2871563 2871644 R tRNA-Leu complement(2871563..2871644) Bordetella avium 197N 6266128 BAVt47 tRNA tRNA-Ser(TGA) NC_010645.1 2878073 2878159 D tRNA-Ser 2878073..2878159 Bordetella avium 197N 6266133 BAVt48 tRNA tRNA-Ser(CGA) NC_010645.1 2896943 2897029 D tRNA-Ser 2896943..2897029 Bordetella avium 197N 6267146 BAVt49 tRNA tRNA-Gly(GCC) NC_010645.1 2953742 2953814 D tRNA-Gly 2953742..2953814 Bordetella avium 197N 6267400 BAVt50 tRNA tRNA-Gly(GCC) NC_010645.1 2962130 2962202 D tRNA-Gly 2962130..2962202 Bordetella avium 197N 6266169 BAVt51 tRNA tRNA-Cys(GCA) NC_010645.1 2974965 2975035 D tRNA-Cys 2974965..2975035 Bordetella avium 197N 6266177 BAVt52 tRNA tRNA-Lys(CTT) NC_010645.1 3093063 3093135 R tRNA-Lys complement(3093063..3093135) Bordetella avium 197N 6266240 BAVt53 tRNA tRNA-Lys(TTT) NC_010645.1 3098628 3098700 R tRNA-Lys complement(3098628..3098700) Bordetella avium 197N 6267269 BAVt54 tRNA tRNA-Ala(TGC) NC_010645.1 3150288 3150360 R tRNA-Ala complement(3150288..3150360) Bordetella avium 197N 6267960 BAVt55 tRNA tRNA-Ile(GAT) NC_010645.1 3150371 3150444 R tRNA-Ile complement(3150371..3150444) Bordetella avium 197N 6267838 BAVt56 tRNA tRNA-Val(CAC) NC_010645.1 3187597 3187668 R tRNA-Val complement(3187597..3187668) Bordetella avium 197N 6266280 BAVt57 tRNA tRNA-Ser(GGA) NC_010645.1 3208248 3208335 R tRNA-Ser complement(3208248..3208335) Bordetella avium 197N 6266294 BAVt58 tRNA BAVt58 NC_010645.1 3426189 3426279 D tRNA-OTHER 3426189..3426279 Bordetella avium 197N 6267752 BAVt59 tRNA tRNA-Arg(CCG) NC_010645.1 3468547 3468618 R tRNA-Arg complement(3468547..3468618) Bordetella avium 197N 6266425 BAVt60 tRNA tRNA-Thr(TGT) NC_010645.1 3618347 3618419 D tRNA-Thr 3618347..3618419 Bordetella avium 197N 6267774 BAVt61 tRNA tRNA-Asn(GTT) NC_010645.1 3619019 3619091 D tRNA-Asn 3619019..3619091 Bordetella avium 197N 6266505 BAVr01 rRNA BAVr01 NC_010645.1 2394467 2394683 R 5S ribosomal RNA complement(2394467..2394683) Bordetella avium 197N 6265865 BAVr02 rRNA BAVr02 NC_010645.1 2394765 2397646 R 23S ribosomal RNA complement(2394765..2397646) Bordetella avium 197N 6267953 BAVr03 rRNA BAVr03 NC_010645.1 2398232 2399753 R 16S ribosomal RNA complement(2398232..2399753) Bordetella avium 197N 6267861 BAVr04 rRNA BAVr04 NC_010645.1 2695669 2695885 R 5S ribosomal RNA complement(2695669..2695885) Bordetella avium 197N 6266013 BAVr05 rRNA BAVr05 NC_010645.1 2695967 2698848 R 23S ribosomal RNA complement(2695967..2698848) Bordetella avium 197N 6267956 BAVr06 rRNA BAVr06 NC_010645.1 2699434 2700955 R 16S ribosomal RNA complement(2699434..2700955) Bordetella avium 197N 6267862 BAV2892a rRNA BAV2892a NC_010645.1 3146774 3146990 R 5S ribosomal RNA complement(3146774..3146990) Bordetella avium 197N 6266259 BAVr07 rRNA BAVr07 NC_010645.1 3147072 3149953 R 23S ribosomal RNA complement(3147072..3149953) Bordetella avium 197N 6267951 BAVr08 rRNA BAVr08 NC_010645.1 3150539 3152060 R 16S ribosomal RNA complement(3150539..3152060) Bordetella avium 197N 6267863