-- dump date 20140619_003732 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 257310000001 SEQ_END SEQ_END NC_002927.3 5339179 5339179 DR NC_002927.3; contig end 5339179..5339179 Bordetella bronchiseptica RB50 NP_886554.1 CDS gidA NC_002927.3 1 1920 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1..1920 Bordetella bronchiseptica RB50 2662552 NP_886555.1 CDS gidB NC_002927.3 1917 2549 D ortholog of Bordetella pertussis (BX470248) BP0002; glucose inhibited division protein B 1917..2549 Bordetella bronchiseptica RB50 2662528 NP_886556.1 CDS parA NC_002927.3 2546 3343 D ortholog of Bordetella pertussis (BX470248) BP0003; ParA family protein 2546..3343 Bordetella bronchiseptica RB50 2662357 NP_886557.1 CDS BB0004 NC_002927.3 3350 4156 D ortholog of Bordetella pertussis (BX470248) BP0004; GNAT family acetyltransferase 3350..4156 Bordetella bronchiseptica RB50 2662349 NP_886558.1 CDS parB NC_002927.3 4200 5117 D ortholog of Bordetella pertussis (BX470248) BP0005; chromosome partitioning protein ParB 4200..5117 Bordetella bronchiseptica RB50 2662345 NP_886559.1 CDS ansB NC_002927.3 5110 6111 D ortholog of Bordetella pertussis (BX470248) BP0006; L-asparaginase II precursor 5110..6111 Bordetella bronchiseptica RB50 2662332 NP_886560.1 CDS tuf NC_002927.3 6707 7897 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 6707..7897 Bordetella bronchiseptica RB50 2662267 NP_886561.1 CDS secE NC_002927.3 8136 8516 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 8136..8516 Bordetella bronchiseptica RB50 2662378 NP_886562.1 CDS nusG NC_002927.3 8526 9059 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 8526..9059 Bordetella bronchiseptica RB50 2661916 NP_886563.1 CDS rplK NC_002927.3 9123 9554 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 9123..9554 Bordetella bronchiseptica RB50 2661653 NP_886564.1 CDS rplA NC_002927.3 9557 10255 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 9557..10255 Bordetella bronchiseptica RB50 2659389 NP_886565.1 CDS rplJ NC_002927.3 10498 11022 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 10498..11022 Bordetella bronchiseptica RB50 2659321 NP_886566.1 CDS rplL NC_002927.3 11104 11487 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 11104..11487 Bordetella bronchiseptica RB50 2662558 NP_886567.1 CDS rpoB NC_002927.3 11623 15759 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 11623..15759 Bordetella bronchiseptica RB50 2662571 NP_886568.1 CDS rpoC NC_002927.3 15759 20003 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 15759..20003 Bordetella bronchiseptica RB50 2662520 NP_886569.1 CDS BB0016 NC_002927.3 20112 20516 R ortholog of Bordetella pertussis (BX470248) BP0017; lipoprotein complement(20112..20516) Bordetella bronchiseptica RB50 2662535 NP_886570.1 CDS BB0017 NC_002927.3 20757 21989 D ortholog of Bordetella pertussis (BX470248) BP0018; hypothetical protein 20757..21989 Bordetella bronchiseptica RB50 2662511 NP_886571.1 CDS BB0018 NC_002927.3 22005 24350 R ortholog of Bordetella pertussis (BX470248) BP0019; two-component sensor protein complement(22005..24350) Bordetella bronchiseptica RB50 2662512 NP_886572.1 CDS BB0019 NC_002927.3 24352 25458 R ortholog of Bordetella pertussis (BX470248) BP0020; peptidoglycan binding protein complement(24352..25458) Bordetella bronchiseptica RB50 2662144 NP_886573.1 CDS BB0020 NC_002927.3 25476 26210 R ortholog of Bordetella pertussis (BX470248) BP0021; two-component response regulator complement(25476..26210) Bordetella bronchiseptica RB50 2659255 NP_886574.1 CDS BB0021 NC_002927.3 26468 27280 D ortholog of Bordetella pertussis (BX470248) BP0022; two-component response regulator 26468..27280 Bordetella bronchiseptica RB50 2662548 NP_886575.1 CDS BB0022 NC_002927.3 27310 28245 R metal transporter complement(27310..28245) Bordetella bronchiseptica RB50 2659776 NP_886576.1 CDS BB0023 NC_002927.3 28251 28526 R hypothetical protein complement(28251..28526) Bordetella bronchiseptica RB50 2660243 NP_886577.2 CDS rpsL NC_002927.3 29103 29480 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 29103..29480 Bordetella bronchiseptica RB50 2660060 NP_886578.1 CDS rpsG NC_002927.3 29644 30114 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 29644..30114 Bordetella bronchiseptica RB50 2659636 NP_886579.1 CDS fusA NC_002927.3 30132 32234 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 30132..32234 Bordetella bronchiseptica RB50 2662567 NP_886580.1 CDS tuf NC_002927.3 32311 33501 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 32311..33501 Bordetella bronchiseptica RB50 2660270 NP_886581.1 CDS rpsJ NC_002927.3 33565 33876 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 33565..33876 Bordetella bronchiseptica RB50 2661798 NP_886582.2 CDS rplC NC_002927.3 34234 34923 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 34234..34923 Bordetella bronchiseptica RB50 2659148 NP_886583.1 CDS rplD NC_002927.3 34928 35545 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 34928..35545 Bordetella bronchiseptica RB50 2662246 NP_886584.1 CDS rplW NC_002927.3 35542 35838 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 35542..35838 Bordetella bronchiseptica RB50 2662331 NP_886585.1 CDS rplB NC_002927.3 35839 36666 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 35839..36666 Bordetella bronchiseptica RB50 2661287 NP_886586.1 CDS rpsS NC_002927.3 36679 36954 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 36679..36954 Bordetella bronchiseptica RB50 2662413 NP_886587.1 CDS rplV NC_002927.3 36958 37287 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 36958..37287 Bordetella bronchiseptica RB50 2662435 NP_886588.1 CDS rpsC NC_002927.3 37297 38088 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 37297..38088 Bordetella bronchiseptica RB50 2662406 NP_886589.1 CDS rplP NC_002927.3 38091 38507 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 38091..38507 Bordetella bronchiseptica RB50 2660136 NP_886590.1 CDS rpmC NC_002927.3 38518 38709 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 38518..38709 Bordetella bronchiseptica RB50 2659349 NP_886591.1 CDS rpsQ NC_002927.3 38711 38992 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 38711..38992 Bordetella bronchiseptica RB50 2660161 NP_886592.1 CDS BB0039 NC_002927.3 39159 40022 R ortholog of Bordetella pertussis (BX470248) BP3623; hydrolase complement(39159..40022) Bordetella bronchiseptica RB50 2660141 NP_886593.1 CDS BB0040 NC_002927.3 40109 41536 R ortholog of Bordetella pertussis (BX470248) BP3624; aldehyde dehydrogenase complement(40109..41536) Bordetella bronchiseptica RB50 2662328 NP_886594.1 CDS rplN NC_002927.3 42435 42803 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 42435..42803 Bordetella bronchiseptica RB50 2660077 NP_886595.1 CDS rplX NC_002927.3 42814 43134 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 42814..43134 Bordetella bronchiseptica RB50 2661671 NP_886596.1 CDS rplE NC_002927.3 43147 43686 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 43147..43686 Bordetella bronchiseptica RB50 2661731 NP_886597.1 CDS rpsN NC_002927.3 43699 44004 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 43699..44004 Bordetella bronchiseptica RB50 2659717 NP_886598.1 CDS rpsH NC_002927.3 44015 44410 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 44015..44410 Bordetella bronchiseptica RB50 2659305 NP_886599.1 CDS rplF NC_002927.3 44421 44954 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 44421..44954 Bordetella bronchiseptica RB50 2661760 NP_886600.1 CDS rplR NC_002927.3 44976 45338 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 44976..45338 Bordetella bronchiseptica RB50 2661732 NP_886601.1 CDS rpsE NC_002927.3 45354 45878 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 45354..45878 Bordetella bronchiseptica RB50 2661994 NP_886602.1 CDS rpmD NC_002927.3 45882 46067 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 45882..46067 Bordetella bronchiseptica RB50 2660158 NP_886603.1 CDS rplO NC_002927.3 46077 46517 D late assembly protein; 50S ribosomal protein L15 46077..46517 Bordetella bronchiseptica RB50 2661651 NP_886604.1 CDS secY NC_002927.3 46532 47857 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 46532..47857 Bordetella bronchiseptica RB50 2661764 NP_886605.1 CDS infA NC_002927.3 47867 48085 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 47867..48085 Bordetella bronchiseptica RB50 2660240 NP_886606.1 CDS rpmJ NC_002927.3 48120 48233 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 48120..48233 Bordetella bronchiseptica RB50 2660099 NP_886607.1 CDS rpsM NC_002927.3 48275 48640 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 48275..48640 Bordetella bronchiseptica RB50 2659288 NP_886608.1 CDS rpsK NC_002927.3 48656 49057 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 48656..49057 Bordetella bronchiseptica RB50 2659708 NP_886609.1 CDS rpsD NC_002927.3 49069 49692 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 49069..49692 Bordetella bronchiseptica RB50 2660271 NP_886610.1 CDS rpoA NC_002927.3 49907 50893 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 49907..50893 Bordetella bronchiseptica RB50 2660041 NP_886611.1 CDS rplQ NC_002927.3 51052 51447 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 51052..51447 Bordetella bronchiseptica RB50 2659737 NP_886612.1 CDS BB0059 NC_002927.3 51576 52013 R ortholog of Bordetella pertussis (BX470248) BP3644; histidine triad protein complement(51576..52013) Bordetella bronchiseptica RB50 2661670 NP_886613.1 CDS cutA NC_002927.3 52120 52461 D ortholog of Bordetella pertussis (BX470248) BP3645; divalent cation tolerance protein 52120..52461 Bordetella bronchiseptica RB50 2662411 NP_886614.1 CDS BB0061 NC_002927.3 52472 54409 D ortholog of Bordetella pertussis (BX470248) BP3646; thiol:disulfide interchange protein 52472..54409 Bordetella bronchiseptica RB50 2660046 NP_886615.1 CDS BB0062 NC_002927.3 54450 55487 D ortholog of Bordetella pertussis (BX470248) BP3647; hypothetical protein 54450..55487 Bordetella bronchiseptica RB50 2662427 NP_886616.1 CDS hemB NC_002927.3 55484 56500 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(55484..56500) Bordetella bronchiseptica RB50 2662431 NP_886617.1 CDS engB NC_002927.3 56497 57120 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(56497..57120) Bordetella bronchiseptica RB50 2662478 NP_886618.1 CDS BB0065 NC_002927.3 57344 58045 D ortholog of Bordetella pertussis (BX470248) BP3650; cytochrome C precursor 57344..58045 Bordetella bronchiseptica RB50 2662492 NP_886619.1 CDS BB0066 NC_002927.3 58164 60260 D ortholog of Bordetella pertussis (BX470248) BP3651; hypothetical protein 58164..60260 Bordetella bronchiseptica RB50 2662490 NP_886620.1 CDS BB0067 NC_002927.3 60270 61604 D ortholog of Bordetella pertussis (BX470248) BP3652; cytochrome c asssembly protein 60270..61604 Bordetella bronchiseptica RB50 2662500 NP_886621.1 CDS lysA NC_002927.3 61675 62964 R ortholog of Bordetella pertussis (BX470248) BP3653; diaminopimelate decarboxylase complement(61675..62964) Bordetella bronchiseptica RB50 2662510 NP_886622.1 CDS cyaY NC_002927.3 63178 63507 D ortholog of Bordetella pertussis (BX470248) BP3654; hypothetical protein 63178..63507 Bordetella bronchiseptica RB50 2662497 NP_886623.1 CDS BB0070 NC_002927.3 63564 66008 R ortholog of Bordetella pertussis (BX470248) BP3655; penicillin-binding protein 1A complement(63564..66008) Bordetella bronchiseptica RB50 2660320 NP_886624.1 CDS aroK NC_002927.3 66122 66757 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 66122..66757 Bordetella bronchiseptica RB50 2662361 NP_886625.1 CDS aroB NC_002927.3 66757 67833 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 66757..67833 Bordetella bronchiseptica RB50 2662499 NP_886626.1 CDS BB0073 NC_002927.3 67830 68984 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 67830..68984 Bordetella bronchiseptica RB50 2662360 NP_886627.1 CDS BB0074 NC_002927.3 69158 69817 R ortholog of Bordetella pertussis (BX470248) BP3659; glutathione S-transferase complement(69158..69817) Bordetella bronchiseptica RB50 2662488 NP_886628.1 CDS uvrA NC_002927.3 69874 72732 R ortholog of Bordetella pertussis (BX470248) BP3660; excinuclease ABC subunit A complement(69874..72732) Bordetella bronchiseptica RB50 2663850 NP_886629.1 CDS BB0076 NC_002927.3 72888 74072 D ortholog of Bordetella pertussis (BX470248) BP3661; transport protein 72888..74072 Bordetella bronchiseptica RB50 2663390 NP_886630.1 CDS ssb NC_002927.3 74305 74805 D ortholog of Bordetella pertussis (BX470248) BP3662; single-strand binding protein 74305..74805 Bordetella bronchiseptica RB50 2662823 NP_886631.1 CDS bfrC NC_002927.3 75038 77152 D ortholog of Bordetella pertussis (BX470248) BP3663; ferric siderophore receptor 75038..77152 Bordetella bronchiseptica RB50 2663366 NP_886632.1 CDS BB0079 NC_002927.3 77289 77792 D ortholog of Bordetella pertussis (BX470248) BP3664; hypothetical protein 77289..77792 Bordetella bronchiseptica RB50 2663411 NP_886633.1 CDS BB0080 NC_002927.3 77811 78590 D ortholog of Bordetella pertussis (BX470248) BP3665; aldolase 77811..78590 Bordetella bronchiseptica RB50 2663347 NP_886634.1 CDS BB0081 NC_002927.3 78619 79635 D ortholog of Bordetella pertussis (BX470248) BP3666; hypothetical protein 78619..79635 Bordetella bronchiseptica RB50 2663869 NP_886635.1 CDS BB0082 NC_002927.3 79689 80483 D ortholog of Bordetella pertussis (BX470248) BP3667; GntR family transcriptional regulator 79689..80483 Bordetella bronchiseptica RB50 2663671 NP_886636.1 CDS BB0083 NC_002927.3 80480 81421 R ortholog of Bordetella pertussis (BX470248) BP3668; transcriptional regulator complement(80480..81421) Bordetella bronchiseptica RB50 2663372 NP_886637.1 CDS BB0084 NC_002927.3 81701 83191 D Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase 81701..83191 Bordetella bronchiseptica RB50 2663168 NP_886638.1 CDS BB0085 NC_002927.3 83230 84216 D ortholog of Bordetella pertussis (BX470248) BP3670; hypothetical protein 83230..84216 Bordetella bronchiseptica RB50 2662867 NP_886639.1 CDS BB0086 NC_002927.3 84369 85514 D ortholog of Bordetella pertussis (BX470248) BP3671; glycosyl transferase family protein 84369..85514 Bordetella bronchiseptica RB50 2662821 NP_886640.1 CDS BB0087 NC_002927.3 85521 86339 D ortholog of Bordetella pertussis (BX470248) BP3672; hypothetical protein 85521..86339 Bordetella bronchiseptica RB50 2663669 NP_886641.1 CDS BB0088 NC_002927.3 86499 87470 D ortholog of Bordetella pertussis (BX470248) BP3673; LysR family transcriptional regulator 86499..87470 Bordetella bronchiseptica RB50 2663412 NP_886642.1 CDS BB0089 NC_002927.3 87496 88497 D ortholog of Bordetella pertussis (BX470248) BP3674; ABC transporter substrate-binding protein 87496..88497 Bordetella bronchiseptica RB50 2663739 NP_886643.1 CDS BB0090 NC_002927.3 88561 89331 D ortholog of Bordetella pertussis (BX470248) BP3675; taurine ABC transporter permease 88561..89331 Bordetella bronchiseptica RB50 2663517 NP_886644.1 CDS BB0091 NC_002927.3 89319 90110 D ortholog of Bordetella pertussis (BX470248) BP3676; taurine ABC transporter ATP-binding protein 89319..90110 Bordetella bronchiseptica RB50 2663513 NP_886645.1 CDS BB0092 NC_002927.3 90138 91454 D ortholog of Bordetella pertussis (BX470248) BP3677; hypothetical protein 90138..91454 Bordetella bronchiseptica RB50 2663202 NP_886646.1 CDS BB0093 NC_002927.3 91591 91779 R ortholog of Bordetella pertussis (BX470248) BP3678; hypothetical protein complement(91591..91779) Bordetella bronchiseptica RB50 2663843 NP_886647.1 CDS BB0094 NC_002927.3 91788 92432 R ortholog of Bordetella pertussis (BX470248) BP3679; TetR family transcriptional regulator complement(91788..92432) Bordetella bronchiseptica RB50 2662925 NP_886648.1 CDS glcB NC_002927.3 92468 94645 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(92468..94645) Bordetella bronchiseptica RB50 2662908 NP_886649.1 CDS glcC NC_002927.3 94889 95653 D ortholog of Bordetella pertussis (BX470248) BP3681; DNA-binding transcriptional regulator GlcC 94889..95653 Bordetella bronchiseptica RB50 2661227 NP_886650.1 CDS BB0097 NC_002927.3 95650 96777 R ortholog of Bordetella pertussis (BX470248) BP3682; dehydrogenase complement(95650..96777) Bordetella bronchiseptica RB50 2663123 NP_886651.1 CDS BB0098 NC_002927.3 97002 97388 R ortholog of Bordetella pertussis (BX470248) BP3683; hypothetical protein complement(97002..97388) Bordetella bronchiseptica RB50 2662996 NP_886652.1 CDS ubiA NC_002927.3 97654 98580 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(97654..98580) Bordetella bronchiseptica RB50 2663150 NP_886653.1 CDS BB0100 NC_002927.3 98667 99866 R ortholog of Bordetella pertussis (BX470248) BP3685; aminotransferase complement(98667..99866) Bordetella bronchiseptica RB50 2662848 NP_886654.1 CDS BB0101 NC_002927.3 100005 100499 D ortholog of Bordetella pertussis (BX470248) BP3686; hypothetical protein 100005..100499 Bordetella bronchiseptica RB50 2663403 NP_886655.1 CDS BB0102 NC_002927.3 100787 101686 D ortholog of Bordetella pertussis (BX470248) BP3687; dihydrodipicolinate synthase 100787..101686 Bordetella bronchiseptica RB50 2663505 NP_886656.1 CDS BB0103 NC_002927.3 101913 102689 D ortholog of Bordetella pertussis (BX470248) BP3205; desaturase 101913..102689 Bordetella bronchiseptica RB50 2663094 NP_886657.1 CDS BB0105 NC_002927.3 102673 103551 D ortholog of Bordetella pertussis (BX470248) BP3207; fatty acid desaturase 102673..103551 Bordetella bronchiseptica RB50 2663559 NP_886658.1 CDS BB0106 NC_002927.3 103579 105492 D Catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; 3-oxoacyl-ACP synthase 103579..105492 Bordetella bronchiseptica RB50 2663762 NP_886659.1 CDS BB0107 NC_002927.3 105489 106370 D hypothetical protein 105489..106370 Bordetella bronchiseptica RB50 2663060 NP_886660.1 CDS BB0108 NC_002927.3 106377 107714 R amino acid permease complement(106377..107714) Bordetella bronchiseptica RB50 2663050 NP_886661.1 CDS BB0109 NC_002927.3 107711 108556 R methyltransferase complement(107711..108556) Bordetella bronchiseptica RB50 2662917 NP_886662.1 CDS BB0110 NC_002927.3 108997 111906 D Similar to Bordetella bronchiseptica outer membrane ligand binding protein BipA SWALL:Q9APE8 (EMBL:AF304006) (1578 aa) fasta scores: E(): 1.2e-114, 48.69% id in 807 aa, and to Escherichia coli O157:H7 adhesin EaeH or z0375 or ecs0336 SWALL:Q8X6G3 (EMBL:AE005207) (1417 aa) fasta scores: E(): 2.8e-16, 23.87% id in 1001 aa; adhesin 108997..111906 Bordetella bronchiseptica RB50 2663022 NP_886663.1 CDS BB0111 NC_002927.3 112001 113629 D ortholog of Bordetella pertussis (BX470248) BP3209+BP0705; dehydrogenase 112001..113629 Bordetella bronchiseptica RB50 2663511 NP_886664.1 CDS BB0112 NC_002927.3 113756 115042 D ortholog of Bordetella pertussis (BX470248) BP0706; hypothetical protein 113756..115042 Bordetella bronchiseptica RB50 2663838 NP_886665.1 CDS BB0113 NC_002927.3 115216 115515 D ortholog of Bordetella pertussis (BX470248) BP0707; hypothetical protein 115216..115515 Bordetella bronchiseptica RB50 2663560 NP_886666.1 CDS BB0114 NC_002927.3 115516 116181 D ortholog of Bordetella pertussis (BX470248) BP0708; hypothetical protein 115516..116181 Bordetella bronchiseptica RB50 2663554 NP_886667.1 CDS aspS NC_002927.3 116222 118012 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 116222..118012 Bordetella bronchiseptica RB50 2663080 NP_886668.1 CDS BB0116 NC_002927.3 118125 118985 D ortholog of Bordetella pertussis (BX470248) BP0710; endonuclease/exonuclease/phosphatase family protein 118125..118985 Bordetella bronchiseptica RB50 2663766 NP_886669.1 CDS BB0117 NC_002927.3 118982 120193 D ortholog of Bordetella pertussis (BX470248) BP0711; phospholipase 118982..120193 Bordetella bronchiseptica RB50 2663776 NP_886670.1 CDS BB0118 NC_002927.3 120194 121078 R ortholog of Bordetella pertussis (BX470248) BP0712; hypothetical protein complement(120194..121078) Bordetella bronchiseptica RB50 2663499 NP_886671.1 CDS BB0119 NC_002927.3 121094 122527 R ortholog of Bordetella pertussis (BX470248) BP0713; hypothetical protein complement(121094..122527) Bordetella bronchiseptica RB50 2663051 NP_886672.1 CDS BB0120 NC_002927.3 122578 123147 R ortholog of Bordetella pertussis (BX470248) BP0715; hypothetical protein complement(122578..123147) Bordetella bronchiseptica RB50 2663777 NP_886673.1 CDS BB0121 NC_002927.3 123421 124398 D NAD dependent epimerase/dehydratase family protein 123421..124398 Bordetella bronchiseptica RB50 2661763 NP_886674.1 CDS BB0122 NC_002927.3 124395 125555 D DegT/DnrJ/EryC1/StrS aminotransferase family protein 124395..125555 Bordetella bronchiseptica RB50 2660165 NP_886675.1 CDS BB0123 NC_002927.3 125694 127589 D Similar to Mycobacterium tuberculosis asparagine synthetase [glutamine-hydrolyzing] rv2201 or mt2257 or mtcy190.12 SWALL:ASNH_MYCTU (SWALL:Q10374) (652 aa) fasta scores: E(): 2.8e-41, 30.4% id in 671 aa; asparagine synthetase 125694..127589 Bordetella bronchiseptica RB50 2661667 NP_886676.1 CDS BB0124 NC_002927.3 127586 128509 D Similar to Streptomyces venezuelae TDP-glucose-4,6-dehydratase DesiV SWALL:Q9ZGH3 (EMBL:AF079762) (337 aa) fasta scores: E(): 4e-12, 27.07% id in 314 aa, and to Pyrococcus abyssi UDP-glucose 4-epimerase Pab2145 SWALL:Q9V1X1 (EMBL:AJ248284) (307 aa) fasta scores: E(): 1.7e-13, 27.85% id in 298 aa; UDP-glucose 4-epimerase 127586..128509 Bordetella bronchiseptica RB50 2659258 NP_886677.1 CDS BB0125 NC_002927.3 128487 129164 D Similar to Methanopyrus kandleri diadenosine tetraphosphatase apah or mk0804 SWALL:Q8TX71 (EMBL:AE010371) (232 aa) fasta scores: E(): 4.9e-14, 32.68% id in 205 aa, and to Pyrococcus horikoshii hypothetical protein Ph1616 ph1616 SWALL:O59233 (EMBL:AP000006) (233 aa) fasta scores: E(): 1.6e-13, 35.21% id in 213 aa; phosphoesterase 128487..129164 Bordetella bronchiseptica RB50 2660267 NP_886678.1 CDS BB0126 NC_002927.3 129177 130247 D undetermined role; similar to CarB protein but much smaller; carbamoyl phosphate synthase-like protein 129177..130247 Bordetella bronchiseptica RB50 2660174 NP_886679.1 CDS BB0127 NC_002927.3 130255 131418 D Similar to Streptomyces rishiriensis C-methyltransferase CouU SWALL:Q9F8S9 (EMBL:AF235050) (420 aa) fasta scores: E(): 7.6e-07, 25.95% id in 339 aa, and to Rhizobium meliloti NDP-hexose 3-C-methyltransferase Rb0640 or Smb21061 SWALL:Q92VQ9 (EMBL:AL603644) (415 aa) fasta scores: E(): 3.4e-09, 29.64% id in 280 aa; C-methyltransferase 130255..131418 Bordetella bronchiseptica RB50 2660124 NP_886680.1 CDS wbmS NC_002927.3 131477 132247 D hypothetical protein 131477..132247 Bordetella bronchiseptica RB50 2659635 NP_886681.1 CDS wbmR NC_002927.3 132244 133173 D formyl transferase 132244..133173 Bordetella bronchiseptica RB50 2661735 NP_886682.1 CDS wbmO NC_002927.3 133281 134606 D hypothetical protein 133281..134606 Bordetella bronchiseptica RB50 2659161 NP_886683.1 CDS wbmN NC_002927.3 134603 135772 D ABC transporter ATP-binding protein 134603..135772 Bordetella bronchiseptica RB50 2659162 NP_886684.1 CDS wbmM NC_002927.3 135765 136973 D ABC transporter ATP-binding protein 135765..136973 Bordetella bronchiseptica RB50 2660228 NP_886685.1 CDS wbmL NC_002927.3 136980 137771 D ABC transporter 136980..137771 Bordetella bronchiseptica RB50 2661699 NP_886686.1 CDS wbmK NC_002927.3 137768 140368 D hypothetical protein 137768..140368 Bordetella bronchiseptica RB50 2659144 NP_886687.1 CDS wbmJ NC_002927.3 140424 143060 D hypothetical protein 140424..143060 Bordetella bronchiseptica RB50 2660118 NP_886688.1 CDS wbmI NC_002927.3 143161 145071 D asparagine synthetase 143161..145071 Bordetella bronchiseptica RB50 2660172 NP_886689.1 CDS wbmH NC_002927.3 145100 146041 D nucleotide sugar epimerase/dehydratase 145100..146041 Bordetella bronchiseptica RB50 2660170 NP_886690.1 CDS wbmG NC_002927.3 146046 146978 D nucleotide sugar epimerase/dehydratase 146046..146978 Bordetella bronchiseptica RB50 2662020 NP_886691.1 CDS wbmF NC_002927.3 146983 148056 D nucleotide sugar epimerase/dehydratase 146983..148056 Bordetella bronchiseptica RB50 2660132 NP_886692.1 CDS wbmE NC_002927.3 148416 149597 R papain-like transglutaminase superfamily protein complement(148416..149597) Bordetella bronchiseptica RB50 2660185 NP_886693.1 CDS wbmD NC_002927.3 149720 150742 R hypothetical protein complement(149720..150742) Bordetella bronchiseptica RB50 2660129 NP_886694.1 CDS wbmC NC_002927.3 150818 152704 R glutamine amidotransferase complement(150818..152704) Bordetella bronchiseptica RB50 2661894 NP_886695.1 CDS wbmB NC_002927.3 152766 153866 D hypothetical protein 152766..153866 Bordetella bronchiseptica RB50 2661728 NP_886696.1 CDS wbmA NC_002927.3 153856 155073 D glycosyl transferase family protein 153856..155073 Bordetella bronchiseptica RB50 2660220 NP_886697.1 CDS bplL NC_002927.3 155091 156965 R ortholog of Bordetella pertussis (BX470248) bplL; lipopolysaccharide biosynthesis protein complement(155091..156965) Bordetella bronchiseptica RB50 2661766 NP_886698.1 CDS bplJ NC_002927.3 157014 158261 R ortholog of Bordetella pertussis (BX470248) bplJ; hypothetical protein complement(157014..158261) Bordetella bronchiseptica RB50 2659399 NP_886699.1 CDS bplI NC_002927.3 158311 159015 R ortholog of Bordetella pertussis (BX470248) bplI; lipopolysaccharide biosynthesis protein complement(158311..159015) Bordetella bronchiseptica RB50 2661680 NP_886700.1 CDS bplH NC_002927.3 159012 160118 R ortholog of Bordetella pertussis (BX470248) bplH; glycosyl transferase family protein complement(159012..160118) Bordetella bronchiseptica RB50 2661816 NP_886701.1 CDS bplG NC_002927.3 160380 160973 R ortholog of Bordetella pertussis (BX470248) bplG; sugar transferase complement(160380..160973) Bordetella bronchiseptica RB50 2661913 NP_886702.1 CDS bplF NC_002927.3 160970 162202 R ortholog of Bordetella pertussis (BX470248) bplF; lipopolysaccharide biosynthesis protein complement(160970..162202) Bordetella bronchiseptica RB50 2661640 NP_886703.1 CDS bplE NC_002927.3 162220 163479 R ortholog of Bordetella pertussis (BX470248) bplE; glycosyl transferase family protein complement(162220..163479) Bordetella bronchiseptica RB50 2661703 NP_886704.1 CDS bplD NC_002927.3 163503 164489 R ortholog of Bordetella pertussis (BX470248) bplD; UDP-N-acetylglucosamine 2-epimerase complement(163503..164489) Bordetella bronchiseptica RB50 2661785 NP_886705.1 CDS bplC NC_002927.3 164599 165699 R ortholog of Bordetella pertussis (BX470248) bplC; lipopolysaccharide biosynthesis protein complement(164599..165699) Bordetella bronchiseptica RB50 2661823 NP_886706.1 CDS bplB NC_002927.3 165703 166278 R ortholog of Bordetella pertussis (BX470248) bplB; acetyltransferase complement(165703..166278) Bordetella bronchiseptica RB50 2661918 NP_886707.1 CDS bplA NC_002927.3 166282 167334 R ortholog of Bordetella pertussis (BX470248) bplA; oxidoreductase complement(166282..167334) Bordetella bronchiseptica RB50 2662247 NP_886708.1 CDS rfaC NC_002927.3 167510 168472 D ortholog of Bordetella pertussis (BX470248) BP0094; heptosyltransferase 167510..168472 Bordetella bronchiseptica RB50 2662268 NP_886709.1 CDS kdtA NC_002927.3 168474 169766 D ortholog of Bordetella pertussis (BX470248) BP0095; 3-deoxy-D-manno-octulosonic-acid transferase 168474..169766 Bordetella bronchiseptica RB50 2662269 NP_886710.1 CDS BB0158 NC_002927.3 169792 170628 R hypothetical protein complement(169792..170628) Bordetella bronchiseptica RB50 2662276 NP_886711.1 CDS BB0159 NC_002927.3 170799 170954 R ortholog of Bordetella pertussis (BX470248) BP0096; Previously sequenced as Bordetella bronchiseptica secreted protein Bblps1.35C SWALL:O88004 (EMBL:AJ007747) (51 aa) fasta scores: E(): 5.1e-20, 100% id in 51 aa; hypothetical protein complement(170799..170954) Bordetella bronchiseptica RB50 2662277 NP_886712.1 CDS baf NC_002927.3 170980 171783 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(170980..171783) Bordetella bronchiseptica RB50 2662293 NP_886713.1 CDS birA NC_002927.3 171780 172622 R ortholog of Bordetella pertussis (BX470248) BP0098; biotin--protein ligase complement(171780..172622) Bordetella bronchiseptica RB50 2662359 NP_886714.1 CDS BB0163 NC_002927.3 172715 173851 D ortholog of Bordetella pertussis (BX470248) BP0099; integral membrane protein 172715..173851 Bordetella bronchiseptica RB50 2662536 NP_886715.1 CDS BB0164 NC_002927.3 173851 174690 D ortholog of Bordetella pertussis (BX470248) BP0100; ABC transporter ATP-binding protein 173851..174690 Bordetella bronchiseptica RB50 2659083 NP_886716.1 CDS BB0165 NC_002927.3 174677 175624 D ortholog of Bordetella pertussis (BX470248) BP0101; hypothetical protein 174677..175624 Bordetella bronchiseptica RB50 2659380 NP_886717.1 CDS BB0166 NC_002927.3 175625 176230 D ortholog of Bordetella pertussis (BX470248) BP0101A; hypothetical protein 175625..176230 Bordetella bronchiseptica RB50 2659050 NP_886718.1 CDS BB0167 NC_002927.3 176260 176913 D ortholog of Bordetella pertussis (BX470248) BP0101B; hypothetical protein 176260..176913 Bordetella bronchiseptica RB50 2662104 NP_886719.1 CDS BB0168 NC_002927.3 177046 178302 D ortholog of Bordetella pertussis (BX470248) BP0102; penicillin-binding protein precursor 177046..178302 Bordetella bronchiseptica RB50 2662096 NP_886720.1 CDS BB0169 NC_002927.3 178305 179249 D ortholog of Bordetella pertussis (BX470248) BP0103; class IV aminotransferase 178305..179249 Bordetella bronchiseptica RB50 2662155 NP_886721.1 CDS BB0170 NC_002927.3 179325 179600 D ortholog of Bordetella pertussis (BX470248) BP0104; hypothetical protein 179325..179600 Bordetella bronchiseptica RB50 2659381 NP_886722.1 CDS lipB NC_002927.3 179608 180270 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 179608..180270 Bordetella bronchiseptica RB50 2660094 NP_886723.1 CDS lipA NC_002927.3 180332 181333 D catalyzes the radical-mediated insertion of two sulfur atoms into an ACP (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 180332..181333 Bordetella bronchiseptica RB50 2662572 NP_886724.1 CDS rfbC NC_002927.3 181348 181896 R ortholog of Bordetella pertussis (BX470248) BP0107; dTDP-4-dehydrorhamnose 3,5-epimerase complement(181348..181896) Bordetella bronchiseptica RB50 2662561 NP_886725.1 CDS rfbD NC_002927.3 181954 182850 R ortholog of Bordetella pertussis (BX470248) BP0108; dTDP-4-dehydrorhamnose reductase complement(181954..182850) Bordetella bronchiseptica RB50 2662553 NP_886726.1 CDS rfbB NC_002927.3 182847 183908 R ortholog of Bordetella pertussis (BX470248) BP0109; dTDP-glucose 4,6-dehydratase complement(182847..183908) Bordetella bronchiseptica RB50 2662557 NP_886727.1 CDS BB0176 NC_002927.3 183944 184504 R ortholog of Bordetella pertussis (BX470248) BP3090; hypothetical protein complement(183944..184504) Bordetella bronchiseptica RB50 2662541 NP_886728.1 CDS BB0177 NC_002927.3 184927 185232 D ortholog of Bordetella pertussis (BX470248) BP3088; hypothetical protein 184927..185232 Bordetella bronchiseptica RB50 2662538 NP_886729.1 CDS hslU NC_002927.3 185275 186609 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding protein HslU complement(185275..186609) Bordetella bronchiseptica RB50 2662534 NP_886730.1 CDS hslV NC_002927.3 186631 187170 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(186631..187170) Bordetella bronchiseptica RB50 2662527 NP_886731.1 CDS dksA NC_002927.3 187318 187782 R ortholog of Bordetella pertussis (BX470248) BP3085; dnaK suppressor protein complement(187318..187782) Bordetella bronchiseptica RB50 2662521 NP_886732.1 CDS BB0181 NC_002927.3 187926 189035 R ortholog of Bordetella pertussis (BX470248) BP3084; hypothetical protein complement(187926..189035) Bordetella bronchiseptica RB50 2662517 NP_886733.1 CDS BB0182 NC_002927.3 189312 189815 R ortholog of Bordetella pertussis (BX470248) BP3083; regulatory protein complement(189312..189815) Bordetella bronchiseptica RB50 2662503 NP_886734.1 CDS BB0183 NC_002927.3 190144 190866 D ortholog of Bordetella pertussis (BX470248) BP3082; transport protein ATP-binding 190144..190866 Bordetella bronchiseptica RB50 2662504 NP_886735.1 CDS BB0184 NC_002927.3 190863 191759 D ortholog of Bordetella pertussis (BX470248) BP3081; ABC transporter permease 190863..191759 Bordetella bronchiseptica RB50 2662494 NP_886736.1 CDS BB0185 NC_002927.3 191756 192685 D ortholog of Bordetella pertussis (BX470248) BP3080; ABC transporter substrate-binding protein 191756..192685 Bordetella bronchiseptica RB50 2662493 NP_886737.1 CDS BB0186 NC_002927.3 192733 193314 D ortholog of Bordetella pertussis (BX470248) BP3079; hypothetical protein 192733..193314 Bordetella bronchiseptica RB50 2662477 NP_886738.1 CDS BB0187 NC_002927.3 193305 194273 D ortholog of Bordetella pertussis (BX470248) BP3078; hypothetical protein 193305..194273 Bordetella bronchiseptica RB50 2662400 NP_886739.1 CDS BB0189 NC_002927.3 194322 196463 D ortholog of Bordetella pertussis (BX470248) BP3077; outer membrane protein 194322..196463 Bordetella bronchiseptica RB50 2662475 NP_886740.1 CDS xerC NC_002927.3 196476 197456 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(196476..197456) Bordetella bronchiseptica RB50 2662470 NP_886741.1 CDS BB0191 NC_002927.3 197471 198163 R ortholog of Bordetella pertussis (BX470248) BP3075; hypothetical protein complement(197471..198163) Bordetella bronchiseptica RB50 2662463 NP_886742.1 CDS dapF NC_002927.3 198190 199101 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(198190..199101) Bordetella bronchiseptica RB50 2662464 NP_886743.1 CDS BB0193 NC_002927.3 199144 200034 R ortholog of Bordetella pertussis (BX470248) BP3073; acyltransferase complement(199144..200034) Bordetella bronchiseptica RB50 2662449 NP_886744.1 CDS BB0194 NC_002927.3 200031 200897 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(200031..200897) Bordetella bronchiseptica RB50 2662448 NP_886745.2 CDS metK NC_002927.3 201180 202343 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 201180..202343 Bordetella bronchiseptica RB50 2662446 NP_886746.1 CDS BB0196 NC_002927.3 202454 202702 D ortholog of Bordetella pertussis (BX470248) BP3070; hypothetical protein 202454..202702 Bordetella bronchiseptica RB50 2662415 NP_886747.1 CDS BB0197 NC_002927.3 202782 203822 D ortholog of Bordetella pertussis (BX470248) BP3069; glycosyl transferase family protein 202782..203822 Bordetella bronchiseptica RB50 2662433 NP_886748.1 CDS acyH NC_002927.3 204102 205520 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 204102..205520 Bordetella bronchiseptica RB50 2662414 NP_886749.1 CDS BB0199 NC_002927.3 205591 205926 D ortholog of Bordetella pertussis (BX470248) BP3067; hypothetical protein 205591..205926 Bordetella bronchiseptica RB50 2662399 NP_886750.1 CDS BB0200 NC_002927.3 205926 206768 D ortholog of Bordetella pertussis (BX470248) BP3066; methylenetetrahydrofolate reductase 205926..206768 Bordetella bronchiseptica RB50 2662395 NP_886751.1 CDS BB0201 NC_002927.3 206832 207803 R ortholog of Bordetella pertussis (BX470248) BP3064; transcriptional regulator complement(206832..207803) Bordetella bronchiseptica RB50 2662394 NP_886752.1 CDS BB0202 NC_002927.3 207867 208886 R ortholog of Bordetella pertussis (BX470248) BP3063; aminohydrolase complement(207867..208886) Bordetella bronchiseptica RB50 2662381 NP_886753.1 CDS BB0203 NC_002927.3 208888 210261 R ortholog of Bordetella pertussis (BX470248) BP3062; integral membrane transport protein complement(208888..210261) Bordetella bronchiseptica RB50 2662371 NP_886754.1 CDS BB0205 NC_002927.3 210539 211219 R ortholog of Bordetella pertussis (BX470248) BP3061; 5-formyltetrahydrofolate cyclo-ligase complement(210539..211219) Bordetella bronchiseptica RB50 2662372 NP_886755.1 CDS BB0206 NC_002927.3 211232 213358 D ortholog of Bordetella pertussis (BX470248) BP3060; transglycosylase 211232..213358 Bordetella bronchiseptica RB50 2662366 NP_886756.1 CDS cca NC_002927.3 213355 214449 D catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 213355..214449 Bordetella bronchiseptica RB50 2662352 NP_886757.1 CDS BB0208 NC_002927.3 214464 215723 R ortholog of Bordetella pertussis (BX470248) BP3058; hypothetical protein complement(214464..215723) Bordetella bronchiseptica RB50 2662341 NP_886758.1 CDS BB0209 NC_002927.3 215743 217467 R ortholog of Bordetella pertussis (BX470248) BP3057; ATP-dependent RNA helicase complement(215743..217467) Bordetella bronchiseptica RB50 2662333 NP_886759.1 CDS ung NC_002927.3 217706 218458 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(217706..218458) Bordetella bronchiseptica RB50 2662329 NP_886760.1 CDS BB0211 NC_002927.3 218495 219223 R haloacid dehalogenase-like hydrolase complement(218495..219223) Bordetella bronchiseptica RB50 2662317 NP_886761.1 CDS BB0212 NC_002927.3 219276 220013 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(219276..220013) Bordetella bronchiseptica RB50 2662316 NP_886762.1 CDS BB0213 NC_002927.3 220172 220987 D hypothetical protein 220172..220987 Bordetella bronchiseptica RB50 2662313 NP_886763.1 CDS BB0214 NC_002927.3 220993 221772 R AraC family transcriptional regulator complement(220993..221772) Bordetella bronchiseptica RB50 2662310 NP_886764.1 CDS fur NC_002927.3 221884 222324 D ferric uptake regulation protein 221884..222324 Bordetella bronchiseptica RB50 2662309 NP_886765.1 CDS BB0216 NC_002927.3 222321 222719 D hypothetical protein 222321..222719 Bordetella bronchiseptica RB50 2662295 NP_886766.1 CDS BB0217 NC_002927.3 222727 223923 R Na+/H+ antiporter protein complement(222727..223923) Bordetella bronchiseptica RB50 2662298 NP_886767.1 CDS BB0218 NC_002927.3 224115 224465 D hypothetical protein 224115..224465 Bordetella bronchiseptica RB50 2662294 NP_886768.1 CDS BB0219 NC_002927.3 224449 225582 D glycosyl transferase family protein 224449..225582 Bordetella bronchiseptica RB50 2662296 NP_886769.1 CDS BB0220 NC_002927.3 225592 226056 R hypothetical protein complement(225592..226056) Bordetella bronchiseptica RB50 2662280 NP_886770.1 CDS BB0221 NC_002927.3 226053 226502 R acetyltransferase (GNAT) family protein complement(226053..226502) Bordetella bronchiseptica RB50 2662271 NP_886771.1 CDS BB0222 NC_002927.3 226535 228058 R hypothetical protein complement(226535..228058) Bordetella bronchiseptica RB50 2662272 NP_886772.1 CDS BB0223 NC_002927.3 228072 228941 R metallo-beta-lactamase superfamily protein complement(228072..228941) Bordetella bronchiseptica RB50 2662265 NP_886773.1 CDS BB0224 NC_002927.3 229045 229380 D transcription regulator ArsR 229045..229380 Bordetella bronchiseptica RB50 2662255 NP_886774.1 CDS BB0225 NC_002927.3 229377 229808 D hypothetical protein 229377..229808 Bordetella bronchiseptica RB50 2662250 NP_886775.1 CDS BB0226 NC_002927.3 229810 230226 D hypothetical protein 229810..230226 Bordetella bronchiseptica RB50 2662245 NP_886776.1 CDS BB0227 NC_002927.3 230242 231507 R phenylacetate-CoA ligase complement(230242..231507) Bordetella bronchiseptica RB50 2661902 NP_886777.1 CDS BB0228 NC_002927.3 231576 232406 R ABC transporter ATP-binding protein complement(231576..232406) Bordetella bronchiseptica RB50 2661901 NP_886778.1 CDS BB0229 NC_002927.3 232468 233805 R hypothetical protein complement(232468..233805) Bordetella bronchiseptica RB50 2661665 NP_886779.1 CDS BB0230 NC_002927.3 233918 234982 R branched-chain amino acid transport system permease complement(233918..234982) Bordetella bronchiseptica RB50 2660177 NP_886780.1 CDS BB0231 NC_002927.3 234993 235922 R branched-chain amino acid transport system permease complement(234993..235922) Bordetella bronchiseptica RB50 2661908 NP_886781.1 CDS BB0232 NC_002927.3 235933 236730 R high-affinity branched-chain amino acid transport ATP-binding protein complement(235933..236730) Bordetella bronchiseptica RB50 2660128 NP_886782.1 CDS BB0233 NC_002927.3 236734 238710 R AMP-binding protein complement(236734..238710) Bordetella bronchiseptica RB50 2659754 NP_886783.1 CDS BB0234 NC_002927.3 238877 239587 D cyclic nucleotide-binding protein 238877..239587 Bordetella bronchiseptica RB50 2661741 NP_886784.1 CDS BB0235 NC_002927.3 239594 240229 R ortholog of Bordetella pertussis (BX470248) BP0564; transporter complement(239594..240229) Bordetella bronchiseptica RB50 2661770 NP_886785.1 CDS BB0236 NC_002927.3 240359 241258 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 240359..241258 Bordetella bronchiseptica RB50 2661893 NP_886786.1 CDS BB0237 NC_002927.3 241354 241845 D ortholog of Bordetella pertussis (BX470248) BP0562; hypothetical protein 241354..241845 Bordetella bronchiseptica RB50 2659241 NP_886787.1 CDS BB0238 NC_002927.3 241892 242857 R ortholog of Bordetella pertussis (BX470248) BP0561; hypothetical protein complement(241892..242857) Bordetella bronchiseptica RB50 2661786 NP_886788.1 CDS BB0239 NC_002927.3 243015 243767 R ortholog of Bordetella pertussis (BX470248) BP0560; hypothetical protein complement(243015..243767) Bordetella bronchiseptica RB50 2661750 NP_886789.1 CDS BB0240 NC_002927.3 243970 245211 D ortholog of Bordetella pertussis (BX470248) BP0559; aminotransferase 243970..245211 Bordetella bronchiseptica RB50 2659275 NP_886790.1 CDS BB0241 NC_002927.3 245325 246341 D ortholog of Bordetella pertussis (BX470248) BP0558; amino acid ABC transporter substrate-binding protein 245325..246341 Bordetella bronchiseptica RB50 2661925 NP_886791.1 CDS BB0242 NC_002927.3 246376 246852 R ortholog of Bordetella pertussis (BX470248) BP0557; hypothetical protein complement(246376..246852) Bordetella bronchiseptica RB50 2660242 NP_886792.1 CDS hmgcL NC_002927.3 246995 247903 R catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase complement(246995..247903) Bordetella bronchiseptica RB50 2661748 NP_886793.1 CDS smf NC_002927.3 248017 249129 R ortholog of Bordetella pertussis (BX470248) BP0555; hypothetical protein complement(248017..249129) Bordetella bronchiseptica RB50 2661709 NP_886794.1 CDS lrp NC_002927.3 249230 249763 R ortholog of Bordetella pertussis (BX470248) BP0554; leucine-responsive regulatory protein complement(249230..249763) Bordetella bronchiseptica RB50 2661745 NP_886795.1 CDS BB0246 NC_002927.3 249852 251102 D ortholog of Bordetella pertussis (BX470248) BP0553; hypothetical protein 249852..251102 Bordetella bronchiseptica RB50 2661788 NP_886796.1 CDS def NC_002927.3 251204 251716 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 251204..251716 Bordetella bronchiseptica RB50 2660219 NP_886797.1 CDS fmt NC_002927.3 251782 252720 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 251782..252720 Bordetella bronchiseptica RB50 2659179 NP_886798.1 CDS BB0249 NC_002927.3 252743 253369 R ortholog of Bordetella pertussis (BX470248) BP0550; hypothetical protein complement(252743..253369) Bordetella bronchiseptica RB50 2661951 NP_886799.1 CDS BB0250 NC_002927.3 253366 254022 R ortholog of Bordetella pertussis (BX470248) BP0549; haloacid dehalogenase-like hydrolase complement(253366..254022) Bordetella bronchiseptica RB50 2660180 NP_886800.1 CDS BB0251 NC_002927.3 254019 254621 R ortholog of Bordetella pertussis (BX470248) BP0548; hypothetical protein complement(254019..254621) Bordetella bronchiseptica RB50 2661628 NP_886801.1 CDS BB0252 NC_002927.3 254628 255254 R ortholog of Bordetella pertussis (BX470248) BP0547; lysine decarboxylase complement(254628..255254) Bordetella bronchiseptica RB50 2660101 NP_886802.1 CDS BB0253 NC_002927.3 255396 255965 D ortholog of Bordetella pertussis (BX470248) BP0546; bacterioferritin 255396..255965 Bordetella bronchiseptica RB50 2660121 NP_886803.1 CDS rimO NC_002927.3 256036 257355 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase complement(256036..257355) Bordetella bronchiseptica RB50 2661692 NP_886804.1 CDS BB0255 NC_002927.3 257463 257654 R 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase complement(257463..257654) Bordetella bronchiseptica RB50 2660123 NP_886805.1 CDS BB0256 NC_002927.3 257906 259279 D ortholog of Bordetella pertussis (BX470248) BP0543; hypothetical protein 257906..259279 Bordetella bronchiseptica RB50 2661658 NP_886806.1 CDS BB0257 NC_002927.3 259350 260345 D ortholog of Bordetella pertussis (BX470248) BP0542; hypothetical protein 259350..260345 Bordetella bronchiseptica RB50 2661700 NP_886807.1 CDS BB0258 NC_002927.3 260430 261104 D ortholog of Bordetella pertussis (BX470248) BP0541; transcriptional regulator 260430..261104 Bordetella bronchiseptica RB50 2661625 NP_886808.1 CDS BB0259 NC_002927.3 261137 261985 R ortholog of Bordetella pertussis (BX470248) BP0566; dioxygenase complement(261137..261985) Bordetella bronchiseptica RB50 2660260 NP_886809.1 CDS BB0260 NC_002927.3 262119 262895 D catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis; L-aspartate dehydrogenase 262119..262895 Bordetella bronchiseptica RB50 2659356 NP_886810.1 CDS BB0261 NC_002927.3 262941 263570 R ortholog of Bordetella pertussis (BX470248) BP0568; amino acid efflux protein complement(262941..263570) Bordetella bronchiseptica RB50 2660069 NP_886811.1 CDS BB0262 NC_002927.3 263678 265012 D ortholog of Bordetella pertussis (BX470248) BP0569; hypothetical protein 263678..265012 Bordetella bronchiseptica RB50 2661716 NP_886812.1 CDS BB0263 NC_002927.3 265031 265642 D ortholog of Bordetella pertussis (BX470248) BP0570; hypothetical protein 265031..265642 Bordetella bronchiseptica RB50 2659229 NP_886813.1 CDS BB0264 NC_002927.3 265639 267948 D ortholog of Bordetella pertussis (BX470248) BP0571; two-component sensor kinase 265639..267948 Bordetella bronchiseptica RB50 2660210 NP_886814.1 CDS BB0265 NC_002927.3 267959 268648 D ortholog of Bordetella pertussis (BX470248) BP0572; two-component response regulator 267959..268648 Bordetella bronchiseptica RB50 2660285 NP_886815.1 CDS trkA NC_002927.3 268645 270024 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 268645..270024 Bordetella bronchiseptica RB50 2660175 NP_886816.1 CDS trkH NC_002927.3 270073 271542 D ortholog of Bordetella pertussis (BX470248) BP0574; Trk system potassium uptake protein 270073..271542 Bordetella bronchiseptica RB50 2660202 NP_886817.1 CDS BB0268 NC_002927.3 271622 272155 D ortholog of Bordetella pertussis (BX470248) BP0575; MarR family transcriptional regulator 271622..272155 Bordetella bronchiseptica RB50 2660152 NP_886818.1 CDS BB0269 NC_002927.3 272163 273158 R ortholog of Bordetella pertussis (BX470248) BP0576; hypothetical protein complement(272163..273158) Bordetella bronchiseptica RB50 2661973 NP_886819.1 CDS BB0270 NC_002927.3 273241 273891 D ortholog of Bordetella pertussis (BX470248) BP0577; hypothetical protein 273241..273891 Bordetella bronchiseptica RB50 2661690 NP_886820.1 CDS BB0271 NC_002927.3 274215 275177 D ortholog of Bordetella pertussis (BX470248) BP0578; hypothetical protein 274215..275177 Bordetella bronchiseptica RB50 2661664 NP_886821.1 CDS maiA NC_002927.3 275203 275955 D ortholog of Bordetella pertussis (BX470248) BP0579; maleate cis-trans isomerase 275203..275955 Bordetella bronchiseptica RB50 2662841 NP_886822.1 CDS BB0273 NC_002927.3 275975 276796 D ortholog of Bordetella pertussis (BX470248) BP0580; alpha/beta hydrolase 275975..276796 Bordetella bronchiseptica RB50 2662852 NP_886823.1 CDS BB0274 NC_002927.3 276824 277855 D ortholog of Bordetella pertussis (BX470248) BP0581; hypothetical protein 276824..277855 Bordetella bronchiseptica RB50 2663445 NP_886824.1 CDS BB0275 NC_002927.3 277871 278488 D ortholog of Bordetella pertussis (BX470248) BP0582; isochorismatase 277871..278488 Bordetella bronchiseptica RB50 2662937 NP_886825.1 CDS BB0276 NC_002927.3 278605 279120 R ortholog of Bordetella pertussis (BX470248) BP0583; ring hydroxylating beta subunit complement(278605..279120) Bordetella bronchiseptica RB50 2663392 NP_886826.1 CDS BB0277 NC_002927.3 279135 280424 R ortholog of Bordetella pertussis (BX470248) BP0584; ring hydroxylating alpha subunit complement(279135..280424) Bordetella bronchiseptica RB50 2663438 NP_886827.1 CDS BB0278 NC_002927.3 280460 281722 R ortholog of Bordetella pertussis (BX470248) BP0585; ferredoxin reductase complement(280460..281722) Bordetella bronchiseptica RB50 2662914 NP_886828.1 CDS BB0279 NC_002927.3 281725 282036 R ortholog of Bordetella pertussis (BX470248) BP0586; ferredoxin complement(281725..282036) Bordetella bronchiseptica RB50 2662899 NP_886829.1 CDS BB0280 NC_002927.3 282506 283609 D ortholog of Bordetella pertussis (BX470248) BP0589; hypothetical protein 282506..283609 Bordetella bronchiseptica RB50 2663370 NP_886830.1 CDS BB0281 NC_002927.3 283639 286017 D ortholog of Bordetella pertussis (BX470248) BP0590; oxidoreductase, large chain 283639..286017 Bordetella bronchiseptica RB50 2663288 NP_886831.1 CDS BB0282 NC_002927.3 286014 286850 D ortholog of Bordetella pertussis (BX470248) BP0591; oxidoreductase, medium chain 286014..286850 Bordetella bronchiseptica RB50 2663356 NP_886832.1 CDS BB0283 NC_002927.3 286847 288034 D ortholog of Bordetella pertussis (BX470248) BP0592; iron-sulfur binding protein 286847..288034 Bordetella bronchiseptica RB50 2663836 NP_886833.1 CDS BB0284 NC_002927.3 288069 289100 D ortholog of Bordetella pertussis (BX470248) BP0593; hypothetical protein 288069..289100 Bordetella bronchiseptica RB50 2662978 NP_886834.1 CDS BB0285 NC_002927.3 289097 289885 D ortholog of Bordetella pertussis (BX470248) BP0594; ABC transporter ATP-binding protein 289097..289885 Bordetella bronchiseptica RB50 2663613 NP_886835.1 CDS BB0286 NC_002927.3 289882 290421 D ortholog of Bordetella pertussis (BX470248) BP0595; ABC transporter permease 289882..290421 Bordetella bronchiseptica RB50 2662782 NP_886836.1 CDS BB0287 NC_002927.3 290461 291090 D ortholog of Bordetella pertussis (BX470248) BP0596; hypothetical protein 290461..291090 Bordetella bronchiseptica RB50 2663870 NP_886837.1 CDS BB0288 NC_002927.3 291093 292751 D ortholog of Bordetella pertussis (BX470248) BP0597; hypothetical protein 291093..292751 Bordetella bronchiseptica RB50 2663119 NP_886838.1 CDS BB0289 NC_002927.3 293100 294341 D ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 293100..294341 Bordetella bronchiseptica RB50 2663861 NP_886839.1 CDS BB0290 NC_002927.3 294357 295391 R ortholog of Bordetella pertussis (BX470248) BP0599; hypothetical protein complement(294357..295391) Bordetella bronchiseptica RB50 2663367 NP_886840.1 CDS BB0291 NC_002927.3 295488 296102 D ortholog of Bordetella pertussis (BX470248) BP0600; hypothetical protein 295488..296102 Bordetella bronchiseptica RB50 2663206 NP_886841.1 CDS BB0292 NC_002927.3 296129 296647 D ortholog of Bordetella pertussis (BX470248) BP0601; rRNA methylase 296129..296647 Bordetella bronchiseptica RB50 2663340 NP_886842.1 CDS BB0293 NC_002927.3 296666 297661 R ortholog of Bordetella pertussis (BX470248) BP0602; hypothetical protein complement(296666..297661) Bordetella bronchiseptica RB50 2663401 NP_886843.1 CDS gpsA NC_002927.3 297716 298771 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(297716..298771) Bordetella bronchiseptica RB50 2662718 NP_886844.1 CDS secB NC_002927.3 298787 299314 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(298787..299314) Bordetella bronchiseptica RB50 2663856 NP_886845.1 CDS grxC NC_002927.3 299368 299661 R ortholog of Bordetella pertussis (BX470248) BP0605; glutaredoxin 3 complement(299368..299661) Bordetella bronchiseptica RB50 2663280 NP_886846.1 CDS BB0297 NC_002927.3 299662 300012 R ortholog of Bordetella pertussis (BX470248) BP0606; hypothetical protein complement(299662..300012) Bordetella bronchiseptica RB50 2663419 NP_886847.1 CDS gpmA NC_002927.3 300237 300989 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 300237..300989 Bordetella bronchiseptica RB50 2663301 NP_886848.1 CDS BB0299 NC_002927.3 300993 302558 D ortholog of Bordetella pertussis (BX470248) BP0608; peptidase 300993..302558 Bordetella bronchiseptica RB50 2663807 NP_886849.1 CDS ctpA NC_002927.3 302579 304030 D ortholog of Bordetella pertussis (BX470248) BP0609; carboxy-terminal processing protease precursor 302579..304030 Bordetella bronchiseptica RB50 2663147 NP_886850.1 CDS thiF NC_002927.3 304027 304821 D ortholog of Bordetella pertussis (BX470248) BP0610; adenylyltransferase 304027..304821 Bordetella bronchiseptica RB50 2663076 NP_886851.1 CDS BB0302 NC_002927.3 304958 305653 D ortholog of Bordetella pertussis (BX470248) BP0209; GntR family transcriptional regulator 304958..305653 Bordetella bronchiseptica RB50 2662762 NP_886852.1 CDS BB0303 NC_002927.3 305670 307082 D ortholog of Bordetella pertussis (BX470248) BP0208; oxidoreductase 305670..307082 Bordetella bronchiseptica RB50 2663032 NP_886853.1 CDS thiC NC_002927.3 307181 309094 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(307181..309094) Bordetella bronchiseptica RB50 2663802 NP_886854.1 CDS BB0305 NC_002927.3 309413 309979 D ortholog of Bordetella pertussis (BX470248) BP0205; lipoprotein 309413..309979 Bordetella bronchiseptica RB50 2663830 NP_886855.1 CDS BB0306 NC_002927.3 310070 311059 D ortholog of Bordetella pertussis (BX470248) BP0204; restriction endonuclease 310070..311059 Bordetella bronchiseptica RB50 2663096 NP_886856.1 CDS BB0307 NC_002927.3 311072 313267 R ortholog of Bordetella pertussis (BX470248) BP0740; DNA methylase complement(311072..313267) Bordetella bronchiseptica RB50 2663059 NP_886857.1 CDS BB0308 NC_002927.3 313340 313747 R ortholog of Bordetella pertussis (BX470248) BP0741; transcriptional regulator complement(313340..313747) Bordetella bronchiseptica RB50 2663061 NP_886858.1 CDS BB0309 NC_002927.3 313887 314330 R ortholog of Bordetella pertussis (BX470248) BP0744; transcriptional regulator complement(313887..314330) Bordetella bronchiseptica RB50 2663673 NP_886859.1 CDS BB0310 NC_002927.3 314393 315187 D ortholog of Bordetella pertussis (BX470248) BP0745; transcriptional regulator 314393..315187 Bordetella bronchiseptica RB50 2663751 NP_886860.1 CDS proB NC_002927.3 315353 316489 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(315353..316489) Bordetella bronchiseptica RB50 2663808 NP_886861.1 CDS obgE NC_002927.3 316560 317693 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(316560..317693) Bordetella bronchiseptica RB50 2662363 NP_886862.1 CDS rpmA NC_002927.3 317843 318103 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(317843..318103) Bordetella bronchiseptica RB50 2662281 NP_886863.1 CDS rplU NC_002927.3 318137 318448 R ortholog of Bordetella pertussis (BX470248) BP0749; 50S ribosomal protein L21 complement(318137..318448) Bordetella bronchiseptica RB50 2662076 NP_886864.1 CDS BB0315 NC_002927.3 318873 320021 D ortholog of Bordetella pertussis (BX470248) BP0750; hypothetical protein 318873..320021 Bordetella bronchiseptica RB50 2661929 NP_886865.1 CDS ispB NC_002927.3 320136 321101 D ortholog of Bordetella pertussis (BX470248) BP0751; octaprenyl-diphosphate synthase 320136..321101 Bordetella bronchiseptica RB50 2661633 NP_886866.1 CDS BB0317 NC_002927.3 321369 322241 R ortholog of Bordetella pertussis (BX470248) BP0752; LysR family transcriptional regulator complement(321369..322241) Bordetella bronchiseptica RB50 2659246 NP_886867.1 CDS hyuA NC_002927.3 322411 324459 D ortholog of Bordetella pertussis (BX470248) BP0753; hydantoin utilization protein A 322411..324459 Bordetella bronchiseptica RB50 2662412 NP_886868.1 CDS hyuB NC_002927.3 324477 326474 D ortholog of Bordetella pertussis (BX470248) BP0754; hydantoin utilization protein B 324477..326474 Bordetella bronchiseptica RB50 2660311 NP_886869.1 CDS BB0320 NC_002927.3 326509 327846 D ortholog of Bordetella pertussis (BX470248) BP0755; amino acid deaminase 326509..327846 Bordetella bronchiseptica RB50 2662452 NP_886870.1 CDS BB0321 NC_002927.3 327843 328913 D ortholog of Bordetella pertussis (BX470248) BP0756; hypothetical protein 327843..328913 Bordetella bronchiseptica RB50 2659655 NP_886871.1 CDS gabD NC_002927.3 328968 330449 D ortholog of Bordetella pertussis (BX470248) BP0757; succinate-semialdehyde dehydrogenase 328968..330449 Bordetella bronchiseptica RB50 2661164 NP_886872.1 CDS cyaC NC_002927.3 330465 331052 R ortholog of Bordetella pertussis (BX470248) BP0758; cyclolysin-activating lysine-acyltransferase complement(330465..331052) Bordetella bronchiseptica RB50 2661810 NP_886873.1 CDS cyaA NC_002927.3 331400 336622 D ortholog of Bordetella pertussis (BX470248) BP0760; bifunctional hemolysin-adenylate cyclase 331400..336622 Bordetella bronchiseptica RB50 2661688 NP_886874.1 CDS cyaB NC_002927.3 336629 338836 D ortholog of Bordetella pertussis (BX470248) BP0761; cyclolysin secretion ATP-binding protein 336629..338836 Bordetella bronchiseptica RB50 2662479 NP_886875.1 CDS cyaD NC_002927.3 338833 340155 D ortholog of Bordetella pertussis (BX470248) BP0762; cyclolysin secretion protein 338833..340155 Bordetella bronchiseptica RB50 2663640 NP_886876.1 CDS cyaE NC_002927.3 340157 341581 D ortholog of Bordetella pertussis (BX470248) BP0763; cyclolysin secretion protein 340157..341581 Bordetella bronchiseptica RB50 2663023 NP_886877.1 CDS cyaX NC_002927.3 341672 342580 D ortholog of Bordetella pertussis (BX470248) BP0764; LysR family transcriptional regulator 341672..342580 Bordetella bronchiseptica RB50 2663178 NP_886878.1 CDS BB0329 NC_002927.3 342645 343559 D ortholog of Bordetella pertussis (BX470248) BP0765; glutamate/aspartate ABC transporter substrate-binding protein 342645..343559 Bordetella bronchiseptica RB50 2663238 NP_886879.1 CDS gltJ NC_002927.3 343643 344401 D ortholog of Bordetella pertussis (BX470248) BP0766; glutamate/aspartate transport system permease 343643..344401 Bordetella bronchiseptica RB50 2663325 NP_886880.1 CDS gltK NC_002927.3 344398 345081 D ortholog of Bordetella pertussis (BX470248) BP0767; glutamate/aspartate transport system permease 344398..345081 Bordetella bronchiseptica RB50 2663710 NP_886881.1 CDS gltL NC_002927.3 345098 345841 D ortholog of Bordetella pertussis (BX470248) BP0768; glutamate/aspartate transport ATP-binding protein 345098..345841 Bordetella bronchiseptica RB50 2663158 NP_886882.1 CDS BB0333 NC_002927.3 345871 346731 D ortholog of Bordetella pertussis (BX470248) BP0769; aminotransferase 345871..346731 Bordetella bronchiseptica RB50 2663163 NP_886883.1 CDS BB0334 NC_002927.3 346739 347305 R ortholog of Bordetella pertussis (BX470248) BP0770; hypothetical protein complement(346739..347305) Bordetella bronchiseptica RB50 2663626 NP_886884.1 CDS BB0335 NC_002927.3 347394 348350 R ortholog of Bordetella pertussis (BX470248) BP0771; hypothetical protein complement(347394..348350) Bordetella bronchiseptica RB50 2662966 NP_886885.1 CDS fabG NC_002927.3 348395 349147 R catalyzes the conversion of 3-hydroxyacyl-CoA to 3-oxyacyl-CoA; acetoacetyl-CoA reductase complement(348395..349147) Bordetella bronchiseptica RB50 2662871 NP_886886.1 CDS BB0337 NC_002927.3 349144 350889 R catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; catalytic; acetolactate synthase catalytic subunit complement(349144..350889) Bordetella bronchiseptica RB50 2662850 NP_886887.1 CDS BB0338 NC_002927.3 350974 351708 D ortholog of Bordetella pertussis (BX470248) BP0774; GntR family transcriptional regulator 350974..351708 Bordetella bronchiseptica RB50 2662791 NP_886888.1 CDS BB0339 NC_002927.3 351716 351895 R hypothetical protein complement(351716..351895) Bordetella bronchiseptica RB50 2662863 NP_886889.1 CDS BB0340 NC_002927.3 352042 353064 D ortholog of Bordetella pertussis (BX470248) BP0775; hypothetical protein 352042..353064 Bordetella bronchiseptica RB50 2663221 NP_886890.1 CDS BB0341 NC_002927.3 353076 353798 R ortholog of Bordetella pertussis (BX470248) BP0776; GntR family transcriptional regulator complement(353076..353798) Bordetella bronchiseptica RB50 2663466 NP_886891.1 CDS BB0342 NC_002927.3 353943 354950 R ortholog of Bordetella pertussis (BX470248) BP0777; Zinc-binding dehydrogenase complement(353943..354950) Bordetella bronchiseptica RB50 2663048 NP_886892.1 CDS BB0343 NC_002927.3 354991 356541 R ortholog of Bordetella pertussis (BX470248) BP0778; acetyl-CoA synthetase complement(354991..356541) Bordetella bronchiseptica RB50 2663227 NP_886893.1 CDS BB0344 NC_002927.3 356538 357656 R ortholog of Bordetella pertussis (BX470248) BP0779; hypothetical protein complement(356538..357656) Bordetella bronchiseptica RB50 2663192 NP_886894.1 CDS BB0345 NC_002927.3 357653 358435 R ortholog of Bordetella pertussis (BX470248) BP0780; hypothetical protein complement(357653..358435) Bordetella bronchiseptica RB50 2663305 NP_886895.1 CDS BB0346 NC_002927.3 358447 359310 R ortholog of Bordetella pertussis (BX470248) BP0781; ABC transporter ATP-binding protein complement(358447..359310) Bordetella bronchiseptica RB50 2663155 NP_886896.1 CDS BB0347 NC_002927.3 359329 360426 R ortholog of Bordetella pertussis (BX470248) BP0782; hypothetical protein complement(359329..360426) Bordetella bronchiseptica RB50 2663612 NP_886897.1 CDS BB0348 NC_002927.3 360495 361421 R ortholog of Bordetella pertussis (BX470248) BP0783; dioxygenase complement(360495..361421) Bordetella bronchiseptica RB50 2662891 NP_886898.1 CDS ilvB NC_002927.3 361456 363150 R ortholog of Bordetella pertussis (BX470248) BP0784; acetolactate synthase large subunit complement(361456..363150) Bordetella bronchiseptica RB50 2663659 NP_886899.1 CDS BB0350 NC_002927.3 363350 364243 R ortholog of Bordetella pertussis (BX470248) BP0785; mechanosensitive channel protein complement(363350..364243) Bordetella bronchiseptica RB50 2662946 NP_886900.1 CDS BB0351 NC_002927.3 364391 365302 R LysR family transcriptional regulator complement(364391..365302) Bordetella bronchiseptica RB50 2663374 NP_886901.1 CDS BB0352 NC_002927.3 365420 366601 D CAIB/BAIF family protein 365420..366601 Bordetella bronchiseptica RB50 2662859 NP_886902.1 CDS BB0353 NC_002927.3 366598 367428 D hypothetical protein 366598..367428 Bordetella bronchiseptica RB50 2663249 NP_886903.1 CDS BB0354 NC_002927.3 367441 368232 R GntR family transcriptional regulator complement(367441..368232) Bordetella bronchiseptica RB50 2663282 NP_886904.1 CDS BB0355 NC_002927.3 368234 368797 R hypothetical protein complement(368234..368797) Bordetella bronchiseptica RB50 2662942 NP_886905.1 CDS BB0356 NC_002927.3 368807 369649 R Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase complement(368807..369649) Bordetella bronchiseptica RB50 2663148 NP_886906.1 CDS BB0357 NC_002927.3 369715 370689 R hypothetical protein complement(369715..370689) Bordetella bronchiseptica RB50 2662975 NP_886907.1 CDS BB0358 NC_002927.3 370947 371918 R hypothetical protein complement(370947..371918) Bordetella bronchiseptica RB50 2663321 NP_886908.1 CDS BB0359 NC_002927.3 371969 373858 R hypothetical protein complement(371969..373858) Bordetella bronchiseptica RB50 2663173 NP_886909.1 CDS BB0360 NC_002927.3 373942 374751 D transcriptional regulator 373942..374751 Bordetella bronchiseptica RB50 2663169 NP_886910.1 CDS scoB NC_002927.3 374789 375427 R succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B protein complement(374789..375427) Bordetella bronchiseptica RB50 2663235 NP_886911.1 CDS scoA NC_002927.3 375441 376145 R succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A complement(375441..376145) Bordetella bronchiseptica RB50 2663548 NP_886912.1 CDS BB0363 NC_002927.3 376292 377236 R LysR family transcriptional regulator complement(376292..377236) Bordetella bronchiseptica RB50 2662913 NP_886913.1 CDS BB0364 NC_002927.3 377390 378205 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 377390..378205 Bordetella bronchiseptica RB50 2662973 NP_886914.1 CDS BB0365 NC_002927.3 378220 379110 D hypothetical protein 378220..379110 Bordetella bronchiseptica RB50 2663876 NP_886915.1 CDS BB0366 NC_002927.3 379200 380408 D hypothetical protein 379200..380408 Bordetella bronchiseptica RB50 2663196 NP_886916.1 CDS BB0367 NC_002927.3 380444 381319 D branched-chain amino acid transport system permease 380444..381319 Bordetella bronchiseptica RB50 2663655 NP_886917.1 CDS BB0368 NC_002927.3 381312 382256 D branched-chain amino acid transport system permease 381312..382256 Bordetella bronchiseptica RB50 2663019 NP_886918.1 CDS BB0369 NC_002927.3 382265 382999 D ABC transporter ATP-binding protein 382265..382999 Bordetella bronchiseptica RB50 2663185 NP_886919.1 CDS BB0370 NC_002927.3 382989 383711 D ABC transporter ATP-binding protein 382989..383711 Bordetella bronchiseptica RB50 2663712 NP_886920.1 CDS BB0371 NC_002927.3 383760 384521 D short chain dehydrogenase 383760..384521 Bordetella bronchiseptica RB50 2662983 NP_886921.1 CDS BB0372 NC_002927.3 384539 384829 D hypothetical protein 384539..384829 Bordetella bronchiseptica RB50 2662783 NP_886922.1 CDS BB0373 NC_002927.3 384864 385646 D short chain dehydrogenase 384864..385646 Bordetella bronchiseptica RB50 2663047 NP_886923.1 CDS BB0374 NC_002927.3 385662 386813 D NADH:flavin oxidoreductase / NADH oxidase family protein 385662..386813 Bordetella bronchiseptica RB50 2663794 NP_886924.1 CDS BB0375 NC_002927.3 387063 387818 D hypothetical protein 387063..387818 Bordetella bronchiseptica RB50 2662793 NP_886925.1 CDS BB0376 NC_002927.3 388153 388602 D hypothetical protein 388153..388602 Bordetella bronchiseptica RB50 2663161 NP_886926.1 CDS BB0377 NC_002927.3 388615 390132 D hypothetical protein 388615..390132 Bordetella bronchiseptica RB50 2663628 NP_886927.1 CDS BB0378 NC_002927.3 390213 391586 R sensor kinase complement(390213..391586) Bordetella bronchiseptica RB50 2663885 NP_886928.1 CDS BB0379 NC_002927.3 391583 392296 R transcriptional regulatory protein complement(391583..392296) Bordetella bronchiseptica RB50 2662586 NP_886929.1 CDS BB0380 NC_002927.3 392776 392991 D Similar to Ralstonia solanacearum hypothetical protein Rsc2574 or Rs00781 SWALL:Q8XWA1 (EMBL:AL646070) (80 aa) fasta scores: E(): 0.016, 44.06% id in 59 aa; hypothetical protein 392776..392991 Bordetella bronchiseptica RB50 2663570 NP_886930.1 CDS BB0381 NC_002927.3 393007 393891 D Weakly similar to Bacillus thuringiensis hypothetical protein Pbt074 SWALL:CAD30119 (EMBL:AL731825) (349 aa) fasta scores: E(): 0.058, 25.98% id in 304 aa; hypothetical protein 393007..393891 Bordetella bronchiseptica RB50 2663569 NP_886931.1 CDS BB0382 NC_002927.3 393868 394755 R Weakly similar to Halobacterium sp. Orf H1617 Vng6088C SWALL:O54575 (EMBL:AF016485) (276 aa) fasta scores: E(): 0.56, 23.44% id in 290 aa; hypothetical protein complement(393868..394755) Bordetella bronchiseptica RB50 2662877 NP_886932.1 CDS hemA NC_002927.3 395820 397094 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 395820..397094 Bordetella bronchiseptica RB50 2663607 NP_886933.1 CDS prfA NC_002927.3 397181 398263 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 397181..398263 Bordetella bronchiseptica RB50 2662758 NP_886934.1 CDS hemK NC_002927.3 398331 399086 D ortholog of Bordetella pertussis (BX470248) BP0679; heme biosynthesis protein 398331..399086 Bordetella bronchiseptica RB50 2663136 NP_886935.1 CDS BB0386 NC_002927.3 399124 399450 D ortholog of Bordetella pertussis (BX470248) BP0680; hypothetical protein 399124..399450 Bordetella bronchiseptica RB50 2663541 NP_886936.1 CDS BB0387 NC_002927.3 399455 400015 D catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 399455..400015 Bordetella bronchiseptica RB50 2663683 NP_886937.1 CDS BB0388 NC_002927.3 400257 401249 D ortholog of Bordetella pertussis (BX470248) BP0682; hypothetical protein 400257..401249 Bordetella bronchiseptica RB50 2663197 NP_886938.1 CDS BB0389 NC_002927.3 401268 402263 D ortholog of Bordetella pertussis (BX470248) BP0683; 4,5-dihydroxyphthalate decarboxylase 401268..402263 Bordetella bronchiseptica RB50 2663276 NP_886939.1 CDS BB0390 NC_002927.3 402279 403148 D ortholog of Bordetella pertussis (BX470248) BP0684; molybdopterin dehydrogenase 402279..403148 Bordetella bronchiseptica RB50 2663887 NP_886940.1 CDS BB0391 NC_002927.3 403145 403654 D ortholog of Bordetella pertussis (BX470248) BP0684A; 2Fe-2S ferredoxin 403145..403654 Bordetella bronchiseptica RB50 2663146 NP_886941.1 CDS BB0392 NC_002927.3 403647 406028 D ortholog of Bordetella pertussis (BX470248) BP0685; dehydrogenase/oxidase 403647..406028 Bordetella bronchiseptica RB50 2662869 NP_886942.1 CDS BB0393 NC_002927.3 406072 406791 D ortholog of Bordetella pertussis (BX470248) BP0686; hypothetical protein 406072..406791 Bordetella bronchiseptica RB50 2663116 NP_886943.1 CDS BB0394 NC_002927.3 406967 408040 R ortholog of Bordetella pertussis (BX470248) BP3435; hypothetical protein complement(406967..408040) Bordetella bronchiseptica RB50 2663351 NP_886944.1 CDS BB0395 NC_002927.3 408208 409002 D ortholog of Bordetella pertussis (BX470248) BP3434; hypothetical protein 408208..409002 Bordetella bronchiseptica RB50 2662901 NP_886945.1 CDS BB0396 NC_002927.3 409042 409566 R ortholog of Bordetella pertussis (BX470248) BP3433; hypothetical protein complement(409042..409566) Bordetella bronchiseptica RB50 2663141 NP_886946.1 CDS cysI NC_002927.3 409559 411301 R ortholog of Bordetella pertussis (BX470248) BP3432; sulfite reductase complement(409559..411301) Bordetella bronchiseptica RB50 2663273 NP_886947.1 CDS BB0398 NC_002927.3 411642 412187 D hypothetical protein 411642..412187 Bordetella bronchiseptica RB50 2663427 NP_886948.1 CDS BB0399 NC_002927.3 412336 413094 R ortholog of Bordetella pertussis (BX470248) BP3431; branched-chain amino acid transport ATP-binding ABC transporter complement(412336..413094) Bordetella bronchiseptica RB50 2663639 NP_886949.1 CDS BB0400 NC_002927.3 413097 413804 R ortholog of Bordetella pertussis (BX470248) BP3430; branched-chain amino acid transport ATP-binding ABC transporter complement(413097..413804) Bordetella bronchiseptica RB50 2663484 NP_886950.1 CDS BB0401 NC_002927.3 413821 414702 R ortholog of Bordetella pertussis (BX470248) BP3429; branched-chain amino acid transport permease complement(413821..414702) Bordetella bronchiseptica RB50 2663255 NP_886951.1 CDS BB0402 NC_002927.3 414713 415702 R ortholog of Bordetella pertussis (BX470248) BP3428; branched-chain amino acid transport permease complement(414713..415702) Bordetella bronchiseptica RB50 2662965 NP_886952.1 CDS BB0403 NC_002927.3 415805 416722 R LysR family transcriptional regulator complement(415805..416722) Bordetella bronchiseptica RB50 2663333 NP_886953.1 CDS BB0404 NC_002927.3 416844 418076 D ortholog of Bordetella pertussis (BX470248) BP3427; branched-chain amino acid binding protein 416844..418076 Bordetella bronchiseptica RB50 2663212 NP_886954.1 CDS BB0405 NC_002927.3 418146 419564 D ortholog of Bordetella pertussis (BX470248) BP3426; amidase 418146..419564 Bordetella bronchiseptica RB50 2663144 NP_886955.1 CDS BB0406 NC_002927.3 419586 420236 R ortholog of Bordetella pertussis (BX470248) BP3425; carbonic anhydrase complement(419586..420236) Bordetella bronchiseptica RB50 2663447 NP_886956.1 CDS BB0407 NC_002927.3 420370 420714 R ortholog of Bordetella pertussis (BX470248) BP3424; hypothetical protein complement(420370..420714) Bordetella bronchiseptica RB50 2663483 NP_886957.1 CDS psiF NC_002927.3 420954 421277 D ortholog of Bordetella pertussis (BX470248) BP0227; phosphate starvation-inducible protein precursor 420954..421277 Bordetella bronchiseptica RB50 2663113 NP_886958.1 CDS BB0409 NC_002927.3 421395 422444 R ortholog of Bordetella pertussis (BX470248) BP0226; hypothetical protein complement(421395..422444) Bordetella bronchiseptica RB50 2663177 NP_886959.1 CDS catD2 NC_002927.3 422441 423265 R ortholog of Bordetella pertussis (BX470248) BP0225; 3-oxoadipate enol-lactone hydrolase complement(422441..423265) Bordetella bronchiseptica RB50 2663867 NP_886960.1 CDS BB0411 NC_002927.3 423266 423562 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(423266..423562) Bordetella bronchiseptica RB50 2663724 NP_886961.1 CDS catC2 NC_002927.3 423588 423863 R ortholog of Bordetella pertussis (BX470248) BP0223; methylmuconolactone isomerase complement(423588..423863) Bordetella bronchiseptica RB50 2663507 NP_886962.1 CDS catJ NC_002927.3 423920 424564 R ortholog of Bordetella pertussis (BX470248) BP0222; 3-oxoadipate CoA-transferase subunit B complement(423920..424564) Bordetella bronchiseptica RB50 2663104 NP_886963.1 CDS catI NC_002927.3 424564 425184 R ortholog of Bordetella pertussis (BX470248) BP0221; 3-oxoadipate CoA-transferase subunit A complement(424564..425184) Bordetella bronchiseptica RB50 2663535 NP_886964.1 CDS BB0415 NC_002927.3 425380 426231 D ortholog of Bordetella pertussis (BX470248) BP0220; transcriptional regulator 425380..426231 Bordetella bronchiseptica RB50 2663069 NP_886965.1 CDS BB0416 NC_002927.3 426282 427007 R ortholog of Bordetella pertussis (BX470248) BP0219; short-chain dehydrogenase complement(426282..427007) Bordetella bronchiseptica RB50 2663702 NP_886966.1 CDS BB0417 NC_002927.3 427040 428473 R ortholog of Bordetella pertussis (BX470248) BP0218; short-chain fatty acids transporter complement(427040..428473) Bordetella bronchiseptica RB50 2663512 NP_886967.1 CDS BB0418 NC_002927.3 428493 429425 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(428493..429425) Bordetella bronchiseptica RB50 2663129 NP_886968.1 CDS sphB1 NC_002927.3 429824 432619 R ortholog of Bordetella pertussis (BX470248) BP0216; autotransporter subtilisin-like protease complement(429824..432619) Bordetella bronchiseptica RB50 2663764 NP_886969.1 CDS ppc NC_002927.3 433213 436161 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(433213..436161) Bordetella bronchiseptica RB50 2663386 NP_886970.1 CDS BB0421 NC_002927.3 436218 436952 D ortholog of Bordetella pertussis (BX470248) BP0214; hypothetical protein 436218..436952 Bordetella bronchiseptica RB50 2663579 NP_886971.1 CDS BB0422 NC_002927.3 436991 437539 R ortholog of Bordetella pertussis (BX470248) BP0213; acetyltransferase complement(436991..437539) Bordetella bronchiseptica RB50 2663597 NP_886972.1 CDS BB0423 NC_002927.3 437694 438593 D ortholog of Bordetella pertussis (BX470248) BP0212; hydrolase 437694..438593 Bordetella bronchiseptica RB50 2663742 NP_886973.1 CDS BB0424 NC_002927.3 438618 439244 R ortholog of Bordetella pertussis (BX470248) BP0282; regulatory protein complement(438618..439244) Bordetella bronchiseptica RB50 2663770 NP_886974.1 CDS BB0425 NC_002927.3 439267 440193 R ortholog of Bordetella pertussis (BX470248) BP0283; 2-hydroxyacid dehydrogenase complement(439267..440193) Bordetella bronchiseptica RB50 2663775 NP_886975.1 CDS BB0426 NC_002927.3 440202 441788 R ortholog of Bordetella pertussis (BX470248) BP0284; peptide ABC transporter substrate-binding protein complement(440202..441788) Bordetella bronchiseptica RB50 2662928 NP_886976.1 CDS BB0427 NC_002927.3 441785 442825 R ortholog of Bordetella pertussis (BX470248) BP0285; acetyl esterase complement(441785..442825) Bordetella bronchiseptica RB50 2663067 NP_886977.1 CDS BB0428 NC_002927.3 442990 443850 D ortholog of Bordetella pertussis (BX470248) BP0286; transcriptional regulator 442990..443850 Bordetella bronchiseptica RB50 2663046 NP_886978.1 CDS leuA NC_002927.3 443882 444883 R ortholog of Bordetella pertussis (BX470248) BP0287; hypothetical protein complement(443882..444883) Bordetella bronchiseptica RB50 2663600 NP_886979.1 CDS BB0430 NC_002927.3 444954 445763 D ortholog of Bordetella pertussis (BX470248) BP0288; transcriptional regulator 444954..445763 Bordetella bronchiseptica RB50 2663577 NP_886980.1 CDS ilvD NC_002927.3 445841 447700 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 445841..447700 Bordetella bronchiseptica RB50 2663573 NP_886981.1 CDS BB0432 NC_002927.3 447760 449097 R ortholog of Bordetella pertussis (BX470248) BP0292; hypothetical protein complement(447760..449097) Bordetella bronchiseptica RB50 2663750 NP_886982.1 CDS BB0433 NC_002927.3 449227 449787 R ortholog of Bordetella pertussis (BX470248) BP0294; 5'(3')-deoxyribonucleotidase complement(449227..449787) Bordetella bronchiseptica RB50 2663571 NP_886983.1 CDS BB0434 NC_002927.3 449847 450434 R 2'-5' RNA ligase complement(449847..450434) Bordetella bronchiseptica RB50 2663816 NP_886984.1 CDS BB0435 NC_002927.3 450558 452087 R hypothetical protein complement(450558..452087) Bordetella bronchiseptica RB50 2663008 NP_886985.1 CDS BB0436 NC_002927.3 452084 455269 R multidrug-efflux system protein complement(452084..455269) Bordetella bronchiseptica RB50 2662777 NP_886986.1 CDS BB0437 NC_002927.3 455286 456467 R hemolysin D complement(455286..456467) Bordetella bronchiseptica RB50 2663025 NP_886987.1 CDS BB0438 NC_002927.3 456711 457733 D LysR family transcriptional regulator 456711..457733 Bordetella bronchiseptica RB50 2663754 NP_886988.1 CDS BB0439 NC_002927.3 457942 459045 D ortholog of Bordetella pertussis (BX470248) BP3604; hypothetical protein 457942..459045 Bordetella bronchiseptica RB50 2663831 NP_886989.1 CDS BB0440 NC_002927.3 459132 459896 D ortholog of Bordetella pertussis (BX470248) BP3605; hypothetical protein 459132..459896 Bordetella bronchiseptica RB50 2663755 NP_886990.1 CDS BB0441 NC_002927.3 460018 461208 D ortholog of Bordetella pertussis (BX470248) BP3606; voltage-gated potassium channel 460018..461208 Bordetella bronchiseptica RB50 2663714 NP_886991.1 CDS BB0442 NC_002927.3 461216 461611 R ortholog of Bordetella pertussis (BX470248) BP0518; hypothetical protein complement(461216..461611) Bordetella bronchiseptica RB50 2663594 NP_886992.1 CDS BB0443 NC_002927.3 461781 462482 D ortholog of Bordetella pertussis (BX470248) BP0519; glutathione S-transferase 461781..462482 Bordetella bronchiseptica RB50 2663066 NP_886993.1 CDS BB0444 NC_002927.3 462745 463605 D ortholog of Bordetella pertussis (BX470248) BP0520; hypothetical protein 462745..463605 Bordetella bronchiseptica RB50 2663088 NP_886994.1 CDS BB0445 NC_002927.3 463681 464016 R ortholog of Bordetella pertussis (BX470248) BP0521; hypothetical protein complement(463681..464016) Bordetella bronchiseptica RB50 2663064 NP_886995.1 CDS BB0446 NC_002927.3 464157 465302 R ortholog of Bordetella pertussis (BX470248) BP0522; metal-activated pyridoxal enzyme complement(464157..465302) Bordetella bronchiseptica RB50 2663488 NP_886996.1 CDS BB0447 NC_002927.3 465329 465988 R ortholog of Bordetella pertussis (BX470248) BP0523; haloacid dehalogenase complement(465329..465988) Bordetella bronchiseptica RB50 2663090 NP_886997.1 CDS BB0448 NC_002927.3 466080 466988 D ortholog of Bordetella pertussis (BX470248) BP0524; transcriptional regulator 466080..466988 Bordetella bronchiseptica RB50 2663581 NP_886998.1 CDS BB0449 NC_002927.3 466985 467179 D ortholog of Bordetella pertussis (BX470248) BP0525; integrase 466985..467179 Bordetella bronchiseptica RB50 2663711 NP_886999.1 CDS BB0450 NC_002927.3 467491 473949 D autotransporter 467491..473949 Bordetella bronchiseptica RB50 2663699 NP_887000.1 CDS BB0450A NC_002927.3 474034 474195 D ortholog of Bordetella pertussis (BX470248) BP0526; hypothetical protein 474034..474195 Bordetella bronchiseptica RB50 2662244 NP_887001.1 CDS ecnA1 NC_002927.3 474227 474358 D ortholog of Bordetella pertussis (BX470248) BP0527; entericidin A anti-toxin 474227..474358 Bordetella bronchiseptica RB50 2659695 NP_887002.1 CDS BB0452 NC_002927.3 474574 481707 D ortholog of Bordetella pertussis (BX470248) BP0529; autotransporter 474574..481707 Bordetella bronchiseptica RB50 2660195 NP_887003.1 CDS BB0453 NC_002927.3 481759 482340 D ortholog of Bordetella pertussis (BX470248) BP0530; hypothetical protein 481759..482340 Bordetella bronchiseptica RB50 2659612 NP_887004.1 CDS BB0454 NC_002927.3 482729 483706 D ortholog of Bordetella pertussis (BX470248) BP0531; hypothetical protein 482729..483706 Bordetella bronchiseptica RB50 2661353 NP_887005.1 CDS BB0455 NC_002927.3 483720 485294 D ortholog of Bordetella pertussis (BX470248) BP0532; substrate-CoA ligase 483720..485294 Bordetella bronchiseptica RB50 2660291 NP_887006.1 CDS BB0456 NC_002927.3 485302 486042 D ortholog of Bordetella pertussis (BX470248) BP0533; transcriptional regulator 485302..486042 Bordetella bronchiseptica RB50 2660150 NP_887007.1 CDS BB0457 NC_002927.3 486066 486830 D ortholog of Bordetella pertussis (BX470248) BP0534; enoyl-CoA hydratase 486066..486830 Bordetella bronchiseptica RB50 2661190 NP_887008.1 CDS BB0458 NC_002927.3 486875 487210 D ortholog of Bordetella pertussis (BX470248) BP0535; carboxymuconolactone decarboxylase 486875..487210 Bordetella bronchiseptica RB50 2662249 NP_887009.1 CDS BB0459 NC_002927.3 487264 488265 D ortholog of Bordetella pertussis (BX470248) BP0536; hypothetical protein 487264..488265 Bordetella bronchiseptica RB50 2662306 NP_887010.1 CDS BB0460 NC_002927.3 488366 489388 D zinc-binding dehydrogenase 488366..489388 Bordetella bronchiseptica RB50 2662358 NP_887011.1 CDS BB0461 NC_002927.3 489480 490733 D ortholog of Bordetella pertussis (BX470248) BP0438; hypothetical protein 489480..490733 Bordetella bronchiseptica RB50 2662386 NP_887012.1 CDS BB0462 NC_002927.3 490711 491673 R ortholog of Bordetella pertussis (BX470248) BP0437; LysR family transcriptional regulator complement(490711..491673) Bordetella bronchiseptica RB50 2661641 NP_887013.1 CDS BB0463 NC_002927.3 491826 492302 D ortholog of Bordetella pertussis (BX470248) BP0436; hypothetical protein 491826..492302 Bordetella bronchiseptica RB50 2659167 NP_887014.1 CDS BB0464 NC_002927.3 492299 493531 D ortholog of Bordetella pertussis (BX470248) BP0435; dehydratase/racemase 492299..493531 Bordetella bronchiseptica RB50 2659312 NP_887015.1 CDS BB0465 NC_002927.3 493595 494560 D ortholog of Bordetella pertussis (BX470248) BP0434; hypothetical protein 493595..494560 Bordetella bronchiseptica RB50 2659653 NP_887016.1 CDS BB0466 NC_002927.3 494547 495533 R ortholog of Bordetella pertussis (BX470248) BP0433; LysR family transcriptional regulator complement(494547..495533) Bordetella bronchiseptica RB50 2662444 NP_887017.1 CDS BB0467 NC_002927.3 495677 496081 D ortholog of Bordetella pertussis (BX470248) BP0432; hypothetical protein 495677..496081 Bordetella bronchiseptica RB50 2659154 NP_887018.1 CDS BB0468 NC_002927.3 496261 499632 D ortholog of Bordetella pertussis (BX470248) BP0431; molybdopterin oxidoreductase 496261..499632 Bordetella bronchiseptica RB50 2662408 NP_887019.1 CDS BB0469 NC_002927.3 499663 501126 D ortholog of Bordetella pertussis (BX470248) BP0430; short-chain fatty acids transporter 499663..501126 Bordetella bronchiseptica RB50 2662811 NP_887020.1 CDS BB0470 NC_002927.3 501283 501918 D ortholog of Bordetella pertussis (BX470248) BP0428; GntR family transcriptional regulator 501283..501918 Bordetella bronchiseptica RB50 2663179 NP_887021.1 CDS BB0471 NC_002927.3 501948 502385 R ortholog of Bordetella pertussis (BX470248) BP0427; hypothetical protein complement(501948..502385) Bordetella bronchiseptica RB50 2663492 NP_887022.1 CDS cspA NC_002927.3 503887 504090 D ortholog of Bordetella pertussis (BX470248) BP0426; cold shock protein 503887..504090 Bordetella bronchiseptica RB50 2663713 NP_887023.1 CDS BB0473 NC_002927.3 504267 505172 D ortholog of Bordetella pertussis (BX470248) BP0425; LysR family transcriptional regulator 504267..505172 Bordetella bronchiseptica RB50 2662261 NP_887024.1 CDS BB0474 NC_002927.3 505198 506172 R hypothetical protein complement(505198..506172) Bordetella bronchiseptica RB50 2662038 NP_887025.1 CDS BB0475 NC_002927.3 506183 507772 R sulfatase complement(506183..507772) Bordetella bronchiseptica RB50 2660258 NP_887026.1 CDS BB0476 NC_002927.3 507780 508820 R hypothetical protein complement(507780..508820) Bordetella bronchiseptica RB50 2660079 NP_887027.1 CDS BB0477 NC_002927.3 509096 510103 D hypothetical protein 509096..510103 Bordetella bronchiseptica RB50 2659615 NP_887028.1 CDS BB0478 NC_002927.3 510163 511812 D hypothetical protein 510163..511812 Bordetella bronchiseptica RB50 2659338 NP_887029.1 CDS BB0479 NC_002927.3 511809 512819 D hypothetical protein 511809..512819 Bordetella bronchiseptica RB50 2662418 NP_887030.1 CDS BB0480 NC_002927.3 512946 514190 R hypothetical protein complement(512946..514190) Bordetella bronchiseptica RB50 2662173 NP_887031.1 CDS BB0481 NC_002927.3 514187 514810 R TetR family transcriptional regulator complement(514187..514810) Bordetella bronchiseptica RB50 2662326 NP_887032.1 CDS BB0482 NC_002927.3 515442 516023 R no significant database matches; hypothetical protein complement(515442..516023) Bordetella bronchiseptica RB50 2662266 NP_887033.1 CDS BB0483 NC_002927.3 516036 517469 R Similar to Pediococcus pentosaceus UsG protein usG SWALL:Q9F3X3 (EMBL:AJ276891) (477 aa) fasta scores: E(): 1.7e-64, 43.08% id in 434 aa; hypothetical protein complement(516036..517469) Bordetella bronchiseptica RB50 2659097 NP_887034.1 CDS BB0484 NC_002927.3 517497 517994 R no significant database matches; hypothetical protein complement(517497..517994) Bordetella bronchiseptica RB50 2660114 NP_887035.1 CDS BB0484A NC_002927.3 518018 518212 R no significant database matches; hypothetical protein complement(518018..518212) Bordetella bronchiseptica RB50 2662149 NP_887036.1 CDS BB0485 NC_002927.3 518209 518442 R Similar to Rhizobium meliloti hypothetical 12.7 kDa protein SWALL:Q91UM4 (EMBL:AJ304453) (110 aa) fasta scores: E(): 3.3e-10, 65.45% id in 55 aa, and to Escherichia coli hypothetical 13.1 kDa protein SWALL:Q91UU7 (EMBL:AJ297913) (117 aa) fasta scores: E(): 2.1e-07, 47.22% id in 72 aa; hypothetical protein complement(518209..518442) Bordetella bronchiseptica RB50 2662578 NP_887037.1 CDS BB0486 NC_002927.3 518550 518783 R no significant database matches; hypothetical protein complement(518550..518783) Bordetella bronchiseptica RB50 2659250 NP_887038.1 CDS BB0487 NC_002927.3 518815 519105 R no significant database matches; hypothetical protein complement(518815..519105) Bordetella bronchiseptica RB50 2661712 NP_887039.1 CDS virB6 NC_002927.3 519095 520147 R Similar to Rhizobium meliloti VirB6 protein SWALL:Q91UR2 (EMBL:AJ304453) (360 aa) fasta scores: E(): 2.9e-40, 46.51% id in 359 aa, and to Escherichia coli VirB6 protein SWALL:Q91UX1 (EMBL:AJ297913) (360 aa) fasta scores: E(): 1.9e-37, 45.4% id in 359 aa; hypothetical protein complement(519095..520147) Bordetella bronchiseptica RB50 2661805 NP_887040.1 CDS BB0489 NC_002927.3 520149 520409 R Similar to Rhizobium meliloti Eex protein SWALL:Q91UR1 (EMBL:AJ304453) (93 aa) fasta scores: E(): 4.7e-10, 45.94% id in 74 aa, and to Escherichia coli hypothetical 10.3 kDa protein SWALL:Q91UX2 (EMBL:AJ297913) (98 aa) fasta scores: E(): 5.8e-10, 42.85% id in 91 aa; hypothetical protein complement(520149..520409) Bordetella bronchiseptica RB50 2660164 NP_887041.1 CDS BB0490 NC_002927.3 520406 520852 R no significant database matches; hypothetical protein complement(520406..520852) Bordetella bronchiseptica RB50 2660253 NP_887042.1 CDS virB5 NC_002927.3 520863 521588 R Similar to Escherichia coli VirB5 protein SWALL:Q91UX3 (EMBL:AJ297913) (239 aa) fasta scores: E(): 1.1e-50, 67.71% id in 223 aa, and to Rhizobium meliloti VirB5 protein SWALL:Q91UQ9 (EMBL:AJ304453) (242 aa) fasta scores: E(): 4.6e-43, 59.05% id in 232 aa; hypothetical protein complement(520863..521588) Bordetella bronchiseptica RB50 2660216 NP_887043.1 CDS BB0492 NC_002927.3 521846 522124 R no significant database matches; hypothetical protein complement(521846..522124) Bordetella bronchiseptica RB50 2660130 NP_887044.1 CDS virD2 NC_002927.3 522129 523124 R Similar to Escherichia coli VirD2 protein SWALL:Q91UW0 (EMBL:AJ297913) (364 aa) fasta scores: E(): 1.4e-49, 53.65% id in 315 aa, and to Rhizobium meliloti VirD2 protein SWALL:Q91US6 (EMBL:AJ304453) (352 aa) fasta scores: E(): 2.1e-49, 50.13% id in 359 aa; hypothetical protein complement(522129..523124) Bordetella bronchiseptica RB50 2660313 NP_887045.1 CDS BB0494 NC_002927.3 523121 523660 R Similar to Escherichia coli hypothetical 20.3 kDa protein SWALL:Q91UV9 (EMBL:AJ297913) (180 aa) fasta scores: E(): 2.2e-19, 41.76% id in 170 aa, and to Rhizobium meliloti hypothetical 22.9 kDa protein SWALL:Q91US7 (EMBL:AJ304453) (201 aa) fasta scores: E(): 4e-17, 36.93% id in 176 aa; hypothetical protein complement(523121..523660) Bordetella bronchiseptica RB50 2661568 NP_887046.1 CDS BB0495 NC_002927.3 523657 524667 R no significant database matches; hypothetical protein complement(523657..524667) Bordetella bronchiseptica RB50 2660244 NP_887047.1 CDS BB0496 NC_002927.3 525357 525713 D Similar to the N-terminal regions of Escherichia coli O157:H7 O218 protein or PphB or z4044 or ecs3590 SWALL:Q9S6P9 (EMBL:AJ006210) (218 aa) fasta scores: E(): 2.6e-09, 42.15% id in 102 aa, and to Escherichia coli O157:H7 PrpB SWALL:Q9XDI3 (EMBL:AF054420) (218 aa) fasta scores: E(): 2.6e-09, 42.15% id in 102 aa; hypothetical protein 525357..525713 Bordetella bronchiseptica RB50 2660162 NP_887048.1 CDS BB0497 NC_002927.3 525735 528851 R no significant database matches; hypothetical protein complement(525735..528851) Bordetella bronchiseptica RB50 2658953 NP_887049.1 CDS BB0498 NC_002927.3 529049 529693 D no significant database matches; hypothetical protein 529049..529693 Bordetella bronchiseptica RB50 2660188 NP_887050.1 CDS BB0499 NC_002927.3 529856 530212 R hypothetical protein complement(529856..530212) Bordetella bronchiseptica RB50 2660282 NP_887051.1 CDS BB0500 NC_002927.3 530239 530604 R Similar to Haemophilus influenzae integrase/recombinase Hi1572 SWALL:YF72_HAEIN (SWALL:P46495) (366 aa) fasta scores: E(): 0.002, 31.89% id in 116 aa, and to Ralstonia solanacearum probable integrase/recombinase Rsc1655 or Rs03938 SWALL:Q8XYV1 (EMBL:AL646065) (334 aa) fasta scores: E(): 0.023, 39.24% id in 79 aa; integrase complement(530239..530604) Bordetella bronchiseptica RB50 2660169 NP_887052.1 CDS htpG NC_002927.3 530986 532893 D molecular chaperone; heat shock protein 90 530986..532893 Bordetella bronchiseptica RB50 2659160 NP_887053.1 CDS BB0502 NC_002927.3 533184 533804 R ortholog of Bordetella pertussis (BX470248) BP0075; glutathione S-transferase complement(533184..533804) Bordetella bronchiseptica RB50 2662569 NP_887054.1 CDS ampD NC_002927.3 533836 534417 R ortholog of Bordetella pertussis (BX470248) BP0076; N-acetyl-anhydromuranmyl-L-alanine amidase complement(533836..534417) Bordetella bronchiseptica RB50 2661213 NP_887055.1 CDS BB0504 NC_002927.3 534503 534754 R ortholog of Bordetella pertussis (BX470248) BP0077; hypothetical protein complement(534503..534754) Bordetella bronchiseptica RB50 2659212 NP_887056.1 CDS BB0505 NC_002927.3 534756 535505 R ortholog of Bordetella pertussis (BX470248) BP0078; hypothetical protein complement(534756..535505) Bordetella bronchiseptica RB50 2662297 NP_887057.1 CDS ffh NC_002927.3 535704 537113 D ortholog of Bordetella pertussis (BX470248) BP0079; signal recognition particle protein 535704..537113 Bordetella bronchiseptica RB50 2662302 NP_887058.1 CDS BB0507 NC_002927.3 537246 537797 R ortholog of Bordetella pertussis (BX470248) BP3689; LysM domain/BON superfamily protein complement(537246..537797) Bordetella bronchiseptica RB50 2662387 NP_887059.1 CDS BB0508 NC_002927.3 537837 538037 R ortholog of Bordetella pertussis (BX470248) BP3690; hypothetical protein complement(537837..538037) Bordetella bronchiseptica RB50 2662439 NP_887060.1 CDS BB0509 NC_002927.3 538048 538995 R ortholog of Bordetella pertussis (BX470248) BP3691; prolyl iminopeptidase complement(538048..538995) Bordetella bronchiseptica RB50 2662122 NP_887061.1 CDS trmB NC_002927.3 538996 539826 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(538996..539826) Bordetella bronchiseptica RB50 2659316 NP_887062.1 CDS BB0511 NC_002927.3 539853 540752 D ortholog of Bordetella pertussis (BX470248) BP3693; LysR family transcriptional regulator 539853..540752 Bordetella bronchiseptica RB50 2661698 NP_887063.1 CDS BB0512 NC_002927.3 540796 542061 D ortholog of Bordetella pertussis (BX470248) BP3694; hypothetical protein 540796..542061 Bordetella bronchiseptica RB50 2661806 NP_887064.1 CDS BB0514 NC_002927.3 543053 544036 D ortholog of Bordetella pertussis (BX470248) BP3696; hypothetical protein 543053..544036 Bordetella bronchiseptica RB50 2661897 NP_887065.1 CDS BB0515 NC_002927.3 544370 544711 R ortholog of Bordetella pertussis (BX470248) BP3697; hypothetical protein complement(544370..544711) Bordetella bronchiseptica RB50 2660171 NP_887066.1 CDS BB0516 NC_002927.3 544903 545700 D transcriptional regulator 544903..545700 Bordetella bronchiseptica RB50 2660237 NP_887067.1 CDS BB0517 NC_002927.3 545741 546922 D dioxygenase subunit 545741..546922 Bordetella bronchiseptica RB50 2662530 NP_887068.1 CDS BB0518 NC_002927.3 546980 547438 D ortholog of Bordetella pertussis (BX470248) BP0070; hydroxylase 546980..547438 Bordetella bronchiseptica RB50 2662547 NP_887069.1 CDS BB0519 NC_002927.3 547459 548640 D ortholog of Bordetella pertussis (BX470248) BP0069; hypothetical protein 547459..548640 Bordetella bronchiseptica RB50 2663362 NP_887070.1 CDS BB0520 NC_002927.3 548701 549237 D ortholog of Bordetella pertussis (BX470248) BP0068; hypothetical protein 548701..549237 Bordetella bronchiseptica RB50 2663307 NP_887071.1 CDS BB0521 NC_002927.3 549268 550539 D ortholog of Bordetella pertussis (BX470248) BP0067; integral membrane protein 549268..550539 Bordetella bronchiseptica RB50 2663415 NP_887072.1 CDS BB0522 NC_002927.3 550574 551632 D ortholog of Bordetella pertussis (BX470248) BP0066; oxidoreductase 550574..551632 Bordetella bronchiseptica RB50 2663226 NP_887073.1 CDS BB0523 NC_002927.3 551733 552050 D ortholog of Bordetella pertussis (BX470248) BP0065; ferredoxin 551733..552050 Bordetella bronchiseptica RB50 2663319 NP_887074.1 CDS BB0524 NC_002927.3 552063 552644 D ortholog of Bordetella pertussis (BX470248) BP0064; hypothetical protein 552063..552644 Bordetella bronchiseptica RB50 2662960 NP_887075.1 CDS BB0525 NC_002927.3 552701 553675 D ortholog of Bordetella pertussis (BX470248) BP0063; hypothetical protein 552701..553675 Bordetella bronchiseptica RB50 2662851 NP_887076.1 CDS BB0526 NC_002927.3 553982 554443 R no significant database matches; hypothetical protein complement(553982..554443) Bordetella bronchiseptica RB50 2663342 NP_887077.1 CDS BB0527 NC_002927.3 554544 555839 R hypothetical protein complement(554544..555839) Bordetella bronchiseptica RB50 2663529 NP_887078.1 CDS BB0528 NC_002927.3 555836 556165 R Similar to Rhizobium etli hypothetical protein Yh035 SWALL:AAM54968 (EMBL:U80928) (101 aa) fasta scores: E(): 9.2e-09, 40.81% id in 98 aa, and to Caulobacter crescentus transcriptional regulator, cro/ci family Cc2771 SWALL:Q9A4Q9 (EMBL:AE005942) (119 aa) fasta scores: E(): 0.043, 30.61% id in 98 aa; DNA-binding protein complement(555836..556165) Bordetella bronchiseptica RB50 2663416 NP_887079.1 CDS BB0529 NC_002927.3 556234 556410 D no significant database matches; hypothetical protein 556234..556410 Bordetella bronchiseptica RB50 2662876 NP_887080.1 CDS BB0530 NC_002927.3 556568 557497 R ortholog of Bordetella pertussis (BX470248) BP0059; regulatory protein complement(556568..557497) Bordetella bronchiseptica RB50 2663451 NP_887081.1 CDS BB0531 NC_002927.3 557617 558600 D hypothetical protein 557617..558600 Bordetella bronchiseptica RB50 2663623 NP_887082.1 CDS BB0532 NC_002927.3 558597 560729 D acyl-CoA synthetase 558597..560729 Bordetella bronchiseptica RB50 2662853 NP_887083.1 CDS BB0533 NC_002927.3 560777 561511 D enoyl-CoA hydratase 560777..561511 Bordetella bronchiseptica RB50 2663263 NP_887084.1 CDS BB0534 NC_002927.3 561590 562567 D hypothetical protein 561590..562567 Bordetella bronchiseptica RB50 2663228 NP_887085.1 CDS BB0535 NC_002927.3 563028 563627 D hypothetical protein 563028..563627 Bordetella bronchiseptica RB50 2663111 NP_887086.1 CDS BB0536 NC_002927.3 563696 564688 D hypothetical protein 563696..564688 Bordetella bronchiseptica RB50 2663156 NP_887087.1 CDS BB0537 NC_002927.3 564738 566327 D sulfurtransferase 564738..566327 Bordetella bronchiseptica RB50 2663863 NP_887088.1 CDS BB0538 NC_002927.3 566368 567258 D LysR family transcriptional regulator 566368..567258 Bordetella bronchiseptica RB50 2663030 NP_887089.1 CDS BB0539 NC_002927.3 567255 568961 D hypothetical protein 567255..568961 Bordetella bronchiseptica RB50 2663421 NP_887090.1 CDS BB0540 NC_002927.3 569066 570307 D hypothetical protein 569066..570307 Bordetella bronchiseptica RB50 2663455 NP_887091.1 CDS BB0541 NC_002927.3 570304 571074 D enoyl-CoA hydratase 570304..571074 Bordetella bronchiseptica RB50 2663110 NP_887092.1 CDS BB0542 NC_002927.3 571123 572109 D hypothetical protein 571123..572109 Bordetella bronchiseptica RB50 2663109 NP_887093.1 CDS BB0543 NC_002927.3 572106 572918 D transcriptional regulator 572106..572918 Bordetella bronchiseptica RB50 2663408 NP_887094.1 CDS BB0544 NC_002927.3 572943 573905 R hypothetical protein complement(572943..573905) Bordetella bronchiseptica RB50 2663748 NP_887095.1 CDS BB0545 NC_002927.3 573987 574385 R hypothetical protein complement(573987..574385) Bordetella bronchiseptica RB50 2663214 NP_887096.1 CDS BB0546 NC_002927.3 574382 575554 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(574382..575554) Bordetella bronchiseptica RB50 2663243 NP_887097.1 CDS BB0547 NC_002927.3 575598 577154 R ligase complement(575598..577154) Bordetella bronchiseptica RB50 2663213 NP_887098.1 CDS BB0548 NC_002927.3 577323 578339 D LacI family regulatory protein 577323..578339 Bordetella bronchiseptica RB50 2663881 NP_887099.1 CDS BB0549 NC_002927.3 578507 578845 D hypothetical protein 578507..578845 Bordetella bronchiseptica RB50 2663606 NP_887100.1 CDS BB0550 NC_002927.3 578888 579097 R hypothetical protein complement(578888..579097) Bordetella bronchiseptica RB50 2663398 NP_887101.1 CDS BB0551 NC_002927.3 579104 580525 R hypothetical protein complement(579104..580525) Bordetella bronchiseptica RB50 2663231 NP_887102.1 CDS BB0552 NC_002927.3 580525 581607 R Zinc-binding dehydrogenase complement(580525..581607) Bordetella bronchiseptica RB50 2663270 NP_887103.1 CDS BB0553 NC_002927.3 581839 582741 D hypothetical protein 581839..582741 Bordetella bronchiseptica RB50 2663035 NP_887104.1 CDS BB0554 NC_002927.3 582766 583131 D carboxymuconolactone decarboxylase 582766..583131 Bordetella bronchiseptica RB50 2663388 NP_887105.1 CDS BB0555 NC_002927.3 583179 583949 R enoyl-CoA hydratase complement(583179..583949) Bordetella bronchiseptica RB50 2663062 NP_887106.1 CDS BB0556 NC_002927.3 583996 585183 R iron-containing alcohol dehydrogenase complement(583996..585183) Bordetella bronchiseptica RB50 2663668 NP_887107.1 CDS BB0557 NC_002927.3 585233 586474 R CaiB/BaiF family protein complement(585233..586474) Bordetella bronchiseptica RB50 2663016 NP_887108.1 CDS BB0558 NC_002927.3 586713 587924 D racemase 586713..587924 Bordetella bronchiseptica RB50 2662934 NP_887109.1 CDS BB0559 NC_002927.3 588130 589095 D hypothetical protein 588130..589095 Bordetella bronchiseptica RB50 2663473 NP_887110.1 CDS BB0560 NC_002927.3 589158 590045 R LysR family transcriptional regulator complement(589158..590045) Bordetella bronchiseptica RB50 2663272 NP_887111.1 CDS BB0561 NC_002927.3 590154 590864 R hypothetical protein complement(590154..590864) Bordetella bronchiseptica RB50 2663720 NP_887112.1 CDS BB0562 NC_002927.3 590917 591897 R hypothetical protein complement(590917..591897) Bordetella bronchiseptica RB50 2662962 NP_887113.1 CDS BB0563 NC_002927.3 592224 593390 D acyl-CoA dehydrogenase 592224..593390 Bordetella bronchiseptica RB50 2663677 NP_887114.1 CDS BB0564 NC_002927.3 593508 594488 D hypothetical protein 593508..594488 Bordetella bronchiseptica RB50 2663526 NP_887115.1 CDS BB0565 NC_002927.3 594583 595119 R hypothetical protein complement(594583..595119) Bordetella bronchiseptica RB50 2663085 NP_887116.1 CDS BB0566 NC_002927.3 595116 596426 R aconitase family protein complement(595116..596426) Bordetella bronchiseptica RB50 2663703 NP_887117.1 CDS BB0567 NC_002927.3 596595 597488 D LysR family transcriptional regulator 596595..597488 Bordetella bronchiseptica RB50 2663783 NP_887118.1 CDS BB0568 NC_002927.3 597522 598937 R hypothetical protein complement(597522..598937) Bordetella bronchiseptica RB50 2663596 NP_887119.1 CDS BB0569 NC_002927.3 598934 599176 R hypothetical protein complement(598934..599176) Bordetella bronchiseptica RB50 2663097 NP_887120.1 CDS BB0570 NC_002927.3 599177 600001 R hydrolase complement(599177..600001) Bordetella bronchiseptica RB50 2663599 NP_887121.1 CDS BB0571 NC_002927.3 600004 600738 R branched-chain amino acid transport ATP-binding protein complement(600004..600738) Bordetella bronchiseptica RB50 2663771 NP_887122.1 CDS BB0572 NC_002927.3 600731 601444 R ABC transporter ATP-binding protein complement(600731..601444) Bordetella bronchiseptica RB50 2662771 NP_887123.1 CDS BB0573 NC_002927.3 601446 602483 R branched-chain amino acid transport system permease complement(601446..602483) Bordetella bronchiseptica RB50 2663728 NP_887124.1 CDS BB0574 NC_002927.3 602500 603375 R branched-chain amino acid transport system permease complement(602500..603375) Bordetella bronchiseptica RB50 2663540 NP_887125.1 CDS BB0575 NC_002927.3 603399 604688 R hypothetical protein complement(603399..604688) Bordetella bronchiseptica RB50 2663727 NP_887126.1 CDS BB0576 NC_002927.3 604968 605711 D TetR family transcriptional regulator 604968..605711 Bordetella bronchiseptica RB50 2663053 NP_887127.1 CDS BB0577 NC_002927.3 605748 606185 R hypothetical protein complement(605748..606185) Bordetella bronchiseptica RB50 2662436 NP_887128.1 CDS BB0578 NC_002927.3 606182 607381 R hypothetical protein complement(606182..607381) Bordetella bronchiseptica RB50 2662397 NP_887129.1 CDS BB0579 NC_002927.3 607422 608225 R hypothetical protein complement(607422..608225) Bordetella bronchiseptica RB50 2662348 NP_887130.1 CDS BB0580 NC_002927.3 608219 608986 R short chain dehydrogenase complement(608219..608986) Bordetella bronchiseptica RB50 2662315 NP_887131.1 CDS BB0581 NC_002927.3 609049 610206 R acyl-CoA dehydrogenase complement(609049..610206) Bordetella bronchiseptica RB50 2662254 NP_887132.1 CDS BB0582 NC_002927.3 610218 610970 R short chain dehydrogenase complement(610218..610970) Bordetella bronchiseptica RB50 2660215 NP_887133.1 CDS BB0583 NC_002927.3 610988 612673 R crotonobetaine/carnitine-CoA ligase complement(610988..612673) Bordetella bronchiseptica RB50 2661725 NP_887134.1 CDS BB0584 NC_002927.3 612724 613341 R hypothetical protein complement(612724..613341) Bordetella bronchiseptica RB50 2660106 NP_887135.1 CDS BB0585 NC_002927.3 613492 614298 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 613492..614298 Bordetella bronchiseptica RB50 2660051 NP_887136.1 CDS BB0586 NC_002927.3 614487 615470 D hypothetical protein 614487..615470 Bordetella bronchiseptica RB50 2661646 NP_887137.1 CDS BB0587 NC_002927.3 615473 616045 D hypothetical protein 615473..616045 Bordetella bronchiseptica RB50 2661751 NP_887138.1 CDS BB0588 NC_002927.3 616063 617826 D proposed role in polysaccahride synthesis; succinate dehydrogenase 616063..617826 Bordetella bronchiseptica RB50 2661845 NP_887139.1 CDS BB0589 NC_002927.3 618085 618972 D hypothetical protein 618085..618972 Bordetella bronchiseptica RB50 2660067 NP_887140.1 CDS BB0590 NC_002927.3 619008 619463 D hypothetical protein 619008..619463 Bordetella bronchiseptica RB50 2661839 NP_887141.1 CDS BB0591 NC_002927.3 619489 620655 D acyl-CoA dehydrogenase 619489..620655 Bordetella bronchiseptica RB50 2662290 NP_887142.1 CDS BB0592 NC_002927.3 620748 621986 D CaiB/BaiF family protein 620748..621986 Bordetella bronchiseptica RB50 2662543 NP_887143.1 CDS BB0593 NC_002927.3 621988 623163 D CaiB/BaiF family protein 621988..623163 Bordetella bronchiseptica RB50 2662484 NP_887144.1 CDS BB0594 NC_002927.3 623174 624148 D hypothetical protein 623174..624148 Bordetella bronchiseptica RB50 2662455 NP_887145.1 CDS BB0595 NC_002927.3 624159 624581 D hypothetical protein 624159..624581 Bordetella bronchiseptica RB50 2662423 NP_887146.1 CDS BB0596 NC_002927.3 624601 625284 D nitroreductase family protein 624601..625284 Bordetella bronchiseptica RB50 2662402 NP_887147.1 CDS BB0597 NC_002927.3 625319 626092 D enoyl-CoA hydratase 625319..626092 Bordetella bronchiseptica RB50 2662380 NP_887148.1 CDS BB0598 NC_002927.3 626248 627417 D branched-chain amino acid ABC transporter substrate-binding protein 626248..627417 Bordetella bronchiseptica RB50 2662339 NP_887149.1 CDS BB0599 NC_002927.3 627434 628309 D branched-chain amino acid ABC transporter permease 627434..628309 Bordetella bronchiseptica RB50 2662289 NP_887150.1 CDS BB0600 NC_002927.3 628302 629198 D branched-chain amino acid transport system permease 628302..629198 Bordetella bronchiseptica RB50 2662257 NP_887151.1 CDS BB0601 NC_002927.3 629208 629957 D ABC transporter ATP-binding protein 629208..629957 Bordetella bronchiseptica RB50 2661787 NP_887152.1 CDS BB0602 NC_002927.3 629947 630666 D ABC transporter ATP-binding protein 629947..630666 Bordetella bronchiseptica RB50 2661730 NP_887153.1 CDS BB0603 NC_002927.3 630681 632651 R NADH:flavin oxidoreductase / NADH oxidase family protein complement(630681..632651) Bordetella bronchiseptica RB50 2661999 NP_887154.1 CDS BB0604 NC_002927.3 632648 633430 R short chain dehydrogenase complement(632648..633430) Bordetella bronchiseptica RB50 2661774 NP_887155.1 CDS BB0605 NC_002927.3 633717 634682 D hypothetical protein 633717..634682 Bordetella bronchiseptica RB50 2660151 NP_887156.1 CDS BB0606 NC_002927.3 634694 635977 D acetyl-CoA hydrolase/transferase 634694..635977 Bordetella bronchiseptica RB50 2661672 NP_887157.1 CDS BB0607 NC_002927.3 635991 637511 D AMP-binding protein 635991..637511 Bordetella bronchiseptica RB50 2659297 NP_887158.1 CDS BB0608 NC_002927.3 637524 638333 R IclR family transcriptional regulator complement(637524..638333) Bordetella bronchiseptica RB50 2662307 NP_887159.1 CDS BB0609 NC_002927.3 638330 639139 R IclR family transcriptional regulator complement(638330..639139) Bordetella bronchiseptica RB50 2662274 NP_887160.1 CDS BB0610 NC_002927.3 639355 642858 R biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase complement(639355..642858) Bordetella bronchiseptica RB50 2662370 NP_887161.1 CDS BB0611 NC_002927.3 642901 644049 R acyl-CoA dehydrogenase complement(642901..644049) Bordetella bronchiseptica RB50 2662209 NP_887162.1 CDS BB0612 NC_002927.3 644138 645163 D enoyl-CoA hydratase 644138..645163 Bordetella bronchiseptica RB50 2659353 NP_887163.1 CDS BB0613 NC_002927.3 645189 645938 D short chain dehydrogenase 645189..645938 Bordetella bronchiseptica RB50 2662325 NP_887164.1 CDS BB0614 NC_002927.3 646042 647247 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 646042..647247 Bordetella bronchiseptica RB50 2659395 NP_887165.1 CDS BB0615 NC_002927.3 647257 649206 D AMP-binding protein 647257..649206 Bordetella bronchiseptica RB50 2659351 NP_887166.1 CDS BB0616 NC_002927.3 649220 650071 D IclR family transcriptional regulator 649220..650071 Bordetella bronchiseptica RB50 2660268 NP_887167.1 CDS BB0617 NC_002927.3 650122 651303 D CaiB/BaiF family protein 650122..651303 Bordetella bronchiseptica RB50 2661747 NP_887168.1 CDS BB0618 NC_002927.3 651327 652256 R LysR family transcriptional regulator complement(651327..652256) Bordetella bronchiseptica RB50 2661876 NP_887169.1 CDS BB0619 NC_002927.3 652370 653536 D acyl-CoA dehydrogenase 652370..653536 Bordetella bronchiseptica RB50 2660248 NP_887170.1 CDS etfB NC_002927.3 653555 654310 D electron transfer flavoprotein subunit beta 653555..654310 Bordetella bronchiseptica RB50 2661645 NP_887171.1 CDS etfA NC_002927.3 654320 655258 D electron transfer flavoprotein subunit alpha 654320..655258 Bordetella bronchiseptica RB50 2660249 NP_887172.1 CDS BB0622 NC_002927.3 655322 656170 D hypothetical protein 655322..656170 Bordetella bronchiseptica RB50 2659296 NP_887173.1 CDS BB0623 NC_002927.3 656241 657197 R LysR family transcriptional regulator complement(656241..657197) Bordetella bronchiseptica RB50 2662498 NP_887174.1 CDS BB0624 NC_002927.3 657308 658732 D hypothetical protein 657308..658732 Bordetella bronchiseptica RB50 2661815 NP_887175.1 CDS BB0625 NC_002927.3 658958 659929 D hypothetical protein 658958..659929 Bordetella bronchiseptica RB50 2661803 NP_887176.1 CDS BB0626 NC_002927.3 659992 660981 D hypothetical protein 659992..660981 Bordetella bronchiseptica RB50 2662199 NP_887177.1 CDS BB0627 NC_002927.3 661132 661743 D hypothetical protein 661132..661743 Bordetella bronchiseptica RB50 2662074 NP_887178.1 CDS BB0628 NC_002927.3 661796 663217 R ortholog of Bordetella pertussis (BX470248) BP0030; hypothetical protein complement(661796..663217) Bordetella bronchiseptica RB50 2662429 NP_887179.1 CDS BB0629 NC_002927.3 663259 664116 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(663259..664116) Bordetella bronchiseptica RB50 2662118 NP_887180.1 CDS BB0630 NC_002927.3 664279 665040 D ortholog of Bordetella pertussis (BX470248) BP3845; nitroreductase family protein 664279..665040 Bordetella bronchiseptica RB50 2662562 NP_887181.1 CDS BB0631 NC_002927.3 665120 665806 R ortholog of Bordetella pertussis (BX470248) BP3846; TetR family transcriptional regulator complement(665120..665806) Bordetella bronchiseptica RB50 2661920 NP_887182.1 CDS BB0632 NC_002927.3 666103 666987 D ortholog of Bordetella pertussis (BX470248) BP3847; hydroxymethylglutaryl-CoA lyase 666103..666987 Bordetella bronchiseptica RB50 2661927 NP_887183.1 CDS BB0633 NC_002927.3 666984 667763 D ortholog of Bordetella pertussis (BX470248) BP3848; enoyl-CoA hydratase 666984..667763 Bordetella bronchiseptica RB50 2662401 NP_887184.1 CDS BB0634 NC_002927.3 667821 669083 D ortholog of Bordetella pertussis (BX470248) BP3849; CAIB/BAIF family protein 667821..669083 Bordetella bronchiseptica RB50 2662389 NP_887185.1 CDS BB0635 NC_002927.3 669182 670153 D ortholog of Bordetella pertussis (BX470248) BP3850; lipoprotein 669182..670153 Bordetella bronchiseptica RB50 2660592 NP_887186.1 CDS BB0636 NC_002927.3 670162 671334 D iron-containing alcohol dehydrogenase 670162..671334 Bordetella bronchiseptica RB50 2662279 NP_887187.1 CDS BB0637 NC_002927.3 671357 672115 D enoyl-CoA hydratase 671357..672115 Bordetella bronchiseptica RB50 2662368 NP_887188.1 CDS BB0638 NC_002927.3 672156 673637 R amidase complement(672156..673637) Bordetella bronchiseptica RB50 2662516 NP_887189.1 CDS BB0639 NC_002927.3 673641 674474 R hypothetical protein complement(673641..674474) Bordetella bronchiseptica RB50 2662456 NP_887190.1 CDS BB0640 NC_002927.3 674492 674935 R hypothetical protein complement(674492..674935) Bordetella bronchiseptica RB50 2662447 NP_887191.1 CDS BB0641 NC_002927.3 674975 676432 R aldehyde dehydrogenase complement(674975..676432) Bordetella bronchiseptica RB50 2661226 NP_887192.1 CDS BB0642 NC_002927.3 676440 677048 R NADPH-dependent FMN reductase complement(676440..677048) Bordetella bronchiseptica RB50 2659298 NP_887193.1 CDS BB0643 NC_002927.3 677056 677841 R transport system permease complement(677056..677841) Bordetella bronchiseptica RB50 2659178 NP_887194.1 CDS BB0644 NC_002927.3 677857 678672 R ABC transporter ATP-binding protein complement(677857..678672) Bordetella bronchiseptica RB50 2662355 NP_887195.1 CDS BB0645 NC_002927.3 678700 679776 R hypothetical protein complement(678700..679776) Bordetella bronchiseptica RB50 2662319 NP_887196.1 CDS BB0646 NC_002927.3 679808 680914 R luciferase-like monooxygenase complement(679808..680914) Bordetella bronchiseptica RB50 2661772 NP_887197.1 CDS BB0647 NC_002927.3 681160 681987 D IclR family transcriptional regulator 681160..681987 Bordetella bronchiseptica RB50 2662180 NP_887198.1 CDS BB0648 NC_002927.3 682015 682719 D regulator 682015..682719 Bordetella bronchiseptica RB50 2660276 NP_887199.1 CDS BB0649 NC_002927.3 682816 683565 D short chain dehydrogenase 682816..683565 Bordetella bronchiseptica RB50 2659317 NP_887200.1 CDS BB0650 NC_002927.3 683633 684610 D hypothetical protein 683633..684610 Bordetella bronchiseptica RB50 2662262 NP_887201.1 CDS BB0651 NC_002927.3 684640 686124 R Similar to Bacillus stearothermophilus aldehyde dehydrogenase AldH SWALL:Q8RKJ5 (EMBL:AJ458323) (494 aa) fasta scores: E(): 1.8e-65, 39.28% id in 476 aa, and to Bacillus halodurans NADP-dependent aldehyde dehydrogenase DhaS or bh0539 SWALL:Q9KFE2 (EMBL:AP001508) (498 aa) fasta scores: E(): 6.6e-66, 38.86% id in 494 aa; aldehyde dehydrogenase complement(684640..686124) Bordetella bronchiseptica RB50 2661762 NP_887202.1 CDS BB0652 NC_002927.3 686130 687137 R Similar to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.9e-46, 43.16% id in 322 aa, and to Agrobacterium tumefaciens hypothetical protein Atu4727 or Agr_l_312 SWALL:Q8U6S9 (EMBL:AE009401) (329 aa) fasta scores: E(): 1.7e-42, 41.17% id in 323 aa; hypothetical protein complement(686130..687137) Bordetella bronchiseptica RB50 2659208 NP_887203.1 CDS BB0653 NC_002927.3 687227 688513 R Similar to Homo sapiens 3-hydroxyisobutyrate dehydrogenase, mitochondrial precursor HibadH SWALL:D3HI_HUMAN (SWALL:P31937) (336 aa) fasta scores: E(): 1.1e-26, 36.03% id in 308 aa, and to Yersinia pestis 2-hydroxy-3-oxopropionate reductase Ypo3648 SWALL:Q8ZAY4 (EMBL:AJ414158) (296 aa) fasta scores: E(): 6e-31, 38.96% id in 290 aa; 3-hydroxyisobutyrate dehydrogenase complement(687227..688513) Bordetella bronchiseptica RB50 2662013 NP_887204.1 CDS BB0654 NC_002927.3 688637 689557 R Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa3778 SWALL:Q9HXL7 (EMBL:AE004796) (311 aa) fasta scores: E(): 1e-31, 35.19% id in 304 aa, and to Ralstonia solanacearum probable transcriptional regulator transcription regulator protein Rsp1571 or Rs02127 SWALL:Q8XPR7 (EMBL:AL646085) (324 aa) fasta scores: E(): 6.2e-25, 30.71% id in 280 aa; LysR family transcriptional regulator complement(688637..689557) Bordetella bronchiseptica RB50 2660265 NP_887205.1 CDS BB0655 NC_002927.3 689827 690612 R transcriptional regulator complement(689827..690612) Bordetella bronchiseptica RB50 2662416 NP_887206.1 CDS BB0656 NC_002927.3 690800 691990 D acyl-CoA dehydrogenase 690800..691990 Bordetella bronchiseptica RB50 2662559 NP_887207.1 CDS BB0657 NC_002927.3 691987 693495 D acetyl-CoA synthetase 691987..693495 Bordetella bronchiseptica RB50 2661926 NP_887208.1 CDS BB0658 NC_002927.3 693527 694546 D hypothetical protein 693527..694546 Bordetella bronchiseptica RB50 2659601 NP_887209.1 CDS BB0659 NC_002927.3 694556 695041 D hypothetical protein 694556..695041 Bordetella bronchiseptica RB50 2660468 NP_887210.1 CDS BB0660 NC_002927.3 695104 696087 D hypothetical protein 695104..696087 Bordetella bronchiseptica RB50 2660486 NP_887211.1 CDS BB0661 NC_002927.3 696133 696966 R enoyl-CoA hydratase complement(696133..696966) Bordetella bronchiseptica RB50 2662390 NP_887212.1 CDS BB0662 NC_002927.3 696963 698366 R hypothetical protein complement(696963..698366) Bordetella bronchiseptica RB50 2661910 NP_887213.1 CDS gcdH NC_002927.3 698363 699589 R glutaryl-CoA dehydrogenase complement(698363..699589) Bordetella bronchiseptica RB50 2662545 NP_887214.1 CDS BB0664 NC_002927.3 699636 700436 R enoyl CoA hydratase complement(699636..700436) Bordetella bronchiseptica RB50 2659225 NP_887215.1 CDS BB0665 NC_002927.3 700455 701639 R thiolase complement(700455..701639) Bordetella bronchiseptica RB50 2662468 NP_887216.1 CDS BB0666 NC_002927.3 701906 702880 D hypothetical protein 701906..702880 Bordetella bronchiseptica RB50 2661773 NP_887217.1 CDS BB0667 NC_002927.3 702882 704324 D acetyl-CoA synthetase 702882..704324 Bordetella bronchiseptica RB50 2662260 NP_887218.1 CDS BB0668 NC_002927.3 704340 705053 D hypothetical protein 704340..705053 Bordetella bronchiseptica RB50 2659301 NP_887219.1 CDS BB0669 NC_002927.3 705028 705984 R LysR family transcriptional regulator complement(705028..705984) Bordetella bronchiseptica RB50 2660206 NP_887220.1 CDS BB0670 NC_002927.3 706204 707061 R hydrolase complement(706204..707061) Bordetella bronchiseptica RB50 2661634 NP_887221.1 CDS BB0671 NC_002927.3 707087 707689 R hypothetical protein complement(707087..707689) Bordetella bronchiseptica RB50 2660223 NP_887222.1 CDS BB0672 NC_002927.3 707730 708764 R hypothetical protein complement(707730..708764) Bordetella bronchiseptica RB50 2662048 NP_887223.1 CDS gst NC_002927.3 709017 709655 D glutathione S-transferase 709017..709655 Bordetella bronchiseptica RB50 2662045 NP_887224.1 CDS BB0674 NC_002927.3 709693 710658 D hypothetical protein 709693..710658 Bordetella bronchiseptica RB50 2659361 NP_887225.1 CDS BB0675 NC_002927.3 710704 711690 R hypothetical protein complement(710704..711690) Bordetella bronchiseptica RB50 2661930 NP_887226.1 CDS BB0676 NC_002927.3 711833 712531 R GntR family transcriptional regulator complement(711833..712531) Bordetella bronchiseptica RB50 2661912 NP_887227.1 CDS BB0677 NC_002927.3 712745 714274 D aldehyde dehydrogenase 712745..714274 Bordetella bronchiseptica RB50 2662288 NP_887228.1 CDS metC NC_002927.3 714291 715454 D cystathionine beta-lyase 714291..715454 Bordetella bronchiseptica RB50 2662379 NP_887229.1 CDS BB0679 NC_002927.3 715485 715835 D hypothetical protein 715485..715835 Bordetella bronchiseptica RB50 2662453 NP_887230.1 CDS BB0680 NC_002927.3 716138 717097 D hypothetical protein 716138..717097 Bordetella bronchiseptica RB50 2662474 NP_887231.1 CDS BB0681 NC_002927.3 717122 718234 D hypothetical protein 717122..718234 Bordetella bronchiseptica RB50 2662509 NP_887232.1 CDS BB0682 NC_002927.3 718249 719271 D hypothetical protein 718249..719271 Bordetella bronchiseptica RB50 2662583 NP_887233.1 CDS BB0683 NC_002927.3 719268 720269 D hypothetical protein 719268..720269 Bordetella bronchiseptica RB50 2663332 NP_887234.1 CDS BB0684 NC_002927.3 720272 720562 D hypothetical protein 720272..720562 Bordetella bronchiseptica RB50 2663290 NP_887235.1 CDS BB0685 NC_002927.3 720652 721395 D transcriptional regulator 720652..721395 Bordetella bronchiseptica RB50 2663296 NP_887236.1 CDS dapA NC_002927.3 721788 722678 D dihydrodipicolinate synthase 721788..722678 Bordetella bronchiseptica RB50 2663294 NP_887237.1 CDS aatB NC_002927.3 722679 723914 D aspartate aminotransferase 722679..723914 Bordetella bronchiseptica RB50 2662858 NP_887238.1 CDS BB0688 NC_002927.3 723999 724829 D ABC transporter substrate-binding protein 723999..724829 Bordetella bronchiseptica RB50 2663354 NP_887239.1 CDS BB0689 NC_002927.3 724826 725476 D amino acid ABC transporter permease 724826..725476 Bordetella bronchiseptica RB50 2663295 NP_887240.1 CDS BB0690 NC_002927.3 725476 726255 D arginine ABC transporter ATP-binding protein 725476..726255 Bordetella bronchiseptica RB50 2663304 NP_887241.1 CDS BB0691 NC_002927.3 726252 727490 D peptidase 726252..727490 Bordetella bronchiseptica RB50 2663676 NP_887242.1 CDS BB0692 NC_002927.3 727563 728360 D transcriptional regulator 727563..728360 Bordetella bronchiseptica RB50 2663649 NP_887243.1 CDS amaB NC_002927.3 728398 729669 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 728398..729669 Bordetella bronchiseptica RB50 2663006 NP_887244.1 CDS BB0694 NC_002927.3 729666 730940 R amidase complement(729666..730940) Bordetella bronchiseptica RB50 2663309 NP_887245.1 CDS BB0695 NC_002927.3 730949 731875 R polysaccharide deacetylase complement(730949..731875) Bordetella bronchiseptica RB50 2663237 NP_887246.1 CDS allA NC_002927.3 731872 732363 R catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase complement(731872..732363) Bordetella bronchiseptica RB50 2663658 NP_887247.1 CDS BB0697 NC_002927.3 732380 733672 R hypothetical protein complement(732380..733672) Bordetella bronchiseptica RB50 2662974 NP_887248.1 CDS BB0698 NC_002927.3 733672 734286 R hypothetical protein complement(733672..734286) Bordetella bronchiseptica RB50 2662861 NP_887249.1 CDS BB0699 NC_002927.3 734349 735395 R C4-dicarboxylate ABC transporter substrate-binding porotein complement(734349..735395) Bordetella bronchiseptica RB50 2663241 NP_887250.1 CDS BB0700 NC_002927.3 735537 736442 D LysR family transcriptional regulator 735537..736442 Bordetella bronchiseptica RB50 2662857 NP_887251.1 CDS BB0701 NC_002927.3 736544 736930 D hypothetical protein 736544..736930 Bordetella bronchiseptica RB50 2663806 NP_887252.1 CDS BB0702 NC_002927.3 736927 737610 R GntR family transcriptional regulator complement(736927..737610) Bordetella bronchiseptica RB50 2662988 NP_887253.1 CDS BB0703 NC_002927.3 737882 738367 D hypothetical protein 737882..738367 Bordetella bronchiseptica RB50 2663188 NP_887254.1 CDS BB0704 NC_002927.3 738467 738991 D hypothetical protein 738467..738991 Bordetella bronchiseptica RB50 2662828 NP_887255.1 CDS BB0705 NC_002927.3 738988 740343 D hypothetical protein 738988..740343 Bordetella bronchiseptica RB50 2663864 NP_887256.1 CDS BB0706 NC_002927.3 740384 741508 D C4-dicarboxylate ABC transporter substrate-binding protein 740384..741508 Bordetella bronchiseptica RB50 2662728 NP_887257.1 CDS BB0707 NC_002927.3 741557 743065 D GntR family transcriptional regulator 741557..743065 Bordetella bronchiseptica RB50 2663027 NP_887258.1 CDS glyA NC_002927.3 743080 744372 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(743080..744372) Bordetella bronchiseptica RB50 2663126 NP_887259.1 CDS benE NC_002927.3 744369 745604 R benzoate membrane transport protein complement(744369..745604) Bordetella bronchiseptica RB50 2663359 NP_887260.1 CDS BB0710 NC_002927.3 745843 746307 D oxidoreductase 745843..746307 Bordetella bronchiseptica RB50 2662921 NP_887261.1 CDS BB0711 NC_002927.3 746304 748655 D aldehyde dehydrogenase 746304..748655 Bordetella bronchiseptica RB50 2663670 NP_887262.1 CDS BB0712 NC_002927.3 748724 749674 D LysR family transcriptional regulator 748724..749674 Bordetella bronchiseptica RB50 2662889 NP_887263.1 CDS BB0713 NC_002927.3 749671 750381 R transcriptional regulator complement(749671..750381) Bordetella bronchiseptica RB50 2663259 NP_887264.1 CDS hmgL NC_002927.3 750474 751472 D Similar to Rhodospirillum rubrum 3-hydroxy-3-methylglutaryl-CoA lyase HmgL SWALL:P95639 (EMBL:U41280) (303 aa) fasta scores: E(): 7.9e-37, 42.43% id in 304 aa, and to Bacillus halodurans hydroxymethylglutaryl-CoA lyase Bh1134 SWALL:Q9KDS7 (EMBL:AP001511) (303 aa) fasta scores: E(): 4e-38, 39.4% id in 302 aa; 3-hydroxy-3-methylglutaryl-CoA lyase 750474..751472 Bordetella bronchiseptica RB50 2662888 NP_887265.1 CDS BB0715 NC_002927.3 751469 752653 D Similar to Ralstonia solanacearum hypothetical protein Rsp1421 or Rs03121 SWALL:Q8XQ65 (EMBL:AL646084) (383 aa) fasta scores: E(): 6e-80, 55.87% id in 383 aa, and to Rhizobium meliloti conserved membrane-anchored protein Rb0848 or Smb21182 SWALL:Q92V66 (EMBL:AL603645) (394 aa) fasta scores: E(): 9.4e-47, 39.58% id in 384 aa; hypothetical protein 751469..752653 Bordetella bronchiseptica RB50 2662720 NP_887266.1 CDS BB0716 NC_002927.3 752650 753318 D Similar to Caulobacter crescentus isochorismatase family protein Cc1170 SWALL:Q9A924 (EMBL:AE005795) (209 aa) fasta scores: E(): 5.4e-17, 35.54% id in 211 aa, and to Thermoplasma volcanium isochorismatase Tv0543 or Tvg0534221 SWALL:Q97BB4 (EMBL:AP000992) (208 aa) fasta scores: E(): 2.1e-10, 24.88% id in 209 aa; isochorismatase 752650..753318 Bordetella bronchiseptica RB50 2662721 NP_887267.1 CDS BB0717 NC_002927.3 753332 754312 D Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 8e-34, 39.48% id in 309 aa, and to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.5e-35, 38.15% id in 304 aa; hypothetical protein 753332..754312 Bordetella bronchiseptica RB50 2662999 NP_887268.1 CDS bcpA NC_002927.3 754309 755286 D Similar to Streptomyces hygroscopicus carboxyvinyl-carboxyphosphonate phosphorylmutase BcpA SWALL:CPPM_STRHY (SWALL:P11435) (294 aa) fasta scores: E(): 2.5e-40, 44.75% id in 286 aa, and to Anabaena sp. carboxyphosphonoenolpyruvate phosphonomutase All1863 SWALL:Q8YVW0 (EMBL:AP003587) (287 aa) fasta scores: E(): 1.4e-40, 43.4% id in 288 aa; carboxyvinyl-carboxyphosphonate phosphorylmutase 754309..755286 Bordetella bronchiseptica RB50 2663439 NP_887269.1 CDS BB0719 NC_002927.3 755365 756345 D Similar to Rhizobium meliloti ABC transporter periplasmic substrate-binding protein Rb0039 or Smb20036 SWALL:Q92XC3 (EMBL:AL603642) (338 aa) fasta scores: E(): 3.3e-10, 24.85% id in 338 aa, and to Fusobacterium nucleatum N-acetylneuraminate-binding protein Fn1472 SWALL:Q8RDN9 (EMBL:AE010653) (327 aa) fasta scores: E(): 5e-09, 25% id in 332 aa; ABC transporter substrate-binding protein 755365..756345 Bordetella bronchiseptica RB50 2663203 NP_887270.1 CDS BB0720 NC_002927.3 756364 756888 D Similar to Rhizobium meliloti hypothetical protein Rb0359 or Smb20373 SWALL:Q92WI0 (EMBL:AL603643) (155 aa) fasta scores: E(): 0.00049, 31.57% id in 152 aa, and to Halomonas elongata small transmembrane protein TeaB SWALL:Q8VPB2 (EMBL:AY061646) (201 aa) fasta scores: E(): 0.00084, 26.7% id in 161 aa; hypothetical protein 756364..756888 Bordetella bronchiseptica RB50 2663461 NP_887271.1 CDS BB0721 NC_002927.3 756890 758182 D Similar to Agrobacterium tumefaciens transmembrane protein DctM SWALL:Q9F7C8 (EMBL:AF282677) (416 aa) fasta scores: E(): 4e-51, 40.97% id in 410 aa, and to Pasteurella multocida hypothetical protein Pm1527 SWALL:Q9CKS9 (EMBL:AE006189) (442 aa) fasta scores: E(): 6.5e-44, 35.51% id in 428 aa; hypothetical protein 756890..758182 Bordetella bronchiseptica RB50 2663643 NP_887272.1 CDS BB0722 NC_002927.3 758187 759104 D Similar to Xylella fastidiosa hypothetical protein Xf1742 SWALL:Q9PCN6 (EMBL:AE003997) (356 aa) fasta scores: E(): 3.7e-15, 29.96% id in 307 aa, and to Xanthomonas axonopodis gluconolactonase Xac0887 SWALL:AAM35775 (EMBL:AE011720) (286 aa) fasta scores: E(): 7.3e-15, 29.5% id in 261 aa; hypothetical protein 758187..759104 Bordetella bronchiseptica RB50 2662712 NP_887273.1 CDS BB0723 NC_002927.3 759101 759421 D Similar to Escherichia coli O157:H7 hypothetical protein Z0890 or Ecs0759 SWALL:Q8X998 (EMBL:AE005251) (105 aa) fasta scores: E(): 7.3e-15, 46.46% id in 99 aa; hypothetical protein 759101..759421 Bordetella bronchiseptica RB50 2663057 NP_887274.1 CDS BB0724 NC_002927.3 759418 760839 D Similar to Escherichia coli O157:H7 hypothetical protein Z0891 or Ecs0760 SWALL:Q8X991 (EMBL:AE005251) (456 aa) fasta scores: E(): 5.5e-59, 37.96% id in 453 aa; hypothetical protein 759418..760839 Bordetella bronchiseptica RB50 2662846 NP_887275.1 CDS BB0725 NC_002927.3 760870 761646 R Similar to Agrobacterium tumefaciens transcriptional regulator SWALL:Q9F7C7 (EMBL:AF282677) (260 aa) fasta scores: E(): 1.7e-15, 30.73% id in 257 aa, and to Streptomyces coelicolor IclR-family regulatory protein Sco0574 or Sc5g5.06 SWALL:Q93RZ6 (EMBL:AL591823) (277 aa) fasta scores: E(): 1.5e-15, 31.71% id in 227 aa; transcriptional regulator complement(760870..761646) Bordetella bronchiseptica RB50 2662800 NP_887276.1 CDS BB0726 NC_002927.3 761810 762784 D Similar to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.4e-36, 36.42% id in 324 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 8.2e-30, 35.22% id in 335 aa; hypothetical protein 761810..762784 Bordetella bronchiseptica RB50 2663338 NP_887277.1 CDS BB0727 NC_002927.3 762806 763807 D Similar to Pseudomonas putida toluate 1,2-dioxygenase electron transfer component [includes: ferredoxin; ferredoxin--NAD(+) reductase] xylZ SWALL:XYLZ_PSEPU (SWALL:P23101) (336 aa) fasta scores: E(): 3.2e-31, 34.25% id in 327 aa, and to Burkholderia sp. NK8 electron transfer component of chlorobenzoate 1,2-dioxygenase CbeC SWALL:Q9AQS2 (EMBL:AB024746) (342 aa) fasta scores: E(): 2.1e-31, 35.41% id in 336 aa; electron transfer component of a dioxygenase system 762806..763807 Bordetella bronchiseptica RB50 2662822 NP_887278.1 CDS hcaE NC_002927.3 763822 765186 D Similar to Escherichia coli and Escherichia coli O157:H7 3-phenylpropionate dioxygenase alpha subunit HcaE or PhdC1 or HcaA or HcaA1 or DigA or b2538 or z3809 or ecs3404 SWALL:HCAE_ECOLI (SWALL:Q47139) (453 aa) fasta scores: E(): 3.8e-63, 38.2% id in 445 aa, and to Sphingomonas sp ring-hydroxylating dioxygenase, large subunit SWALL:O86913 (EMBL:AJ223220) (416 aa) fasta scores: E(): 4.4e-79, 48.44% id in 386 aa; hydroxylating alpha subunit of a dioxygenase system 763822..765186 Bordetella bronchiseptica RB50 2663803 NP_887279.1 CDS BB0729 NC_002927.3 765183 766022 D Similar to Rhizobium etli short chain type dehydrogenase reductase Yp008 SWALL:AAM54803 (EMBL:U80928) (280 aa) fasta scores: E(): 1.1e-17, 37.27% id in 279 aa, and to Ralstonia solanacearum probable toluenesulfonate zinc-independent alcohol dehydrogenase oxidoreductase TsaC or rsc2351 or rs01195 SWALL:Q8XWW9 (EMBL:AL646069) (252 aa) fasta scores: E(): 4.5e-18, 36.82% id in 258 aa; short chain dehydrogenase 765183..766022 Bordetella bronchiseptica RB50 2663033 NP_887280.1 CDS BB0730 NC_002927.3 766015 766599 D Similar to Pseudomonas putida benzene 1,2-dioxygenase beta subunit bedc2 SWALL:BED2_PSEPU (SWALL:Q07945) (187 aa) fasta scores: E(): 1.9e-17, 36.99% id in 173 aa, and to Rhodococcus erythropolis isopropylbenzene 2,3-dioxygenase ipba2 SWALL:P72257 (EMBL:U24277) (187 aa) fasta scores: E(): 2.1e-18, 36.31% id in 190 aa; 3-phenylpropionate dioxygenase subunit beta 766015..766599 Bordetella bronchiseptica RB50 2663617 NP_887281.1 CDS BB0731 NC_002927.3 766609 766797 D no significant database matches; hypothetical protein 766609..766797 Bordetella bronchiseptica RB50 2663500 NP_887282.1 CDS cadA NC_002927.3 766922 768568 D Similar to Pseudomonas putida FAD-monooxygenase CadA SWALL:Q93AG2 (EMBL:AF421356) (553 aa) fasta scores: E(): 1e-121, 56.37% id in 541 aa, and to Nocardia aerocolonigenes monooxygenase SWALL:CAC93716 (EMBL:AJ414559) (529 aa) fasta scores: E(): 3.8e-36, 34.18% id in 550 aa; hypothetical protein 766922..768568 Bordetella bronchiseptica RB50 2663504 NP_887283.1 CDS BB0733 NC_002927.3 768609 769574 D Similar to Agrobacterium tumefaciens hypothetical protein Atu4727 or Agr_l_312 SWALL:Q8U6S9 (EMBL:AE009401) (329 aa) fasta scores: E(): 1.3e-46, 46.68% id in 317 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 6.3e-37, 37.53% id in 325 aa; hypothetical protein 768609..769574 Bordetella bronchiseptica RB50 2663112 NP_887284.1 CDS hpaG NC_002927.3 769619 770293 D Similar to the N-terminal region of Escherichia coli 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpaG SWALL:HPAG_ECOLI (SWALL:Q46978) (429 aa) fasta scores: E(): 2.9e-20, 37.25% id in 204 aa, and similar to Pseudomonas aeruginosa hypothetical protein Pa4121 SWALL:Q9HWR0 (EMBL:AE004828) (219 aa) fasta scores: E(): 7.1e-22, 37.25% id in 204 aa; fumarylacetoacetate hydrolase family protein 769619..770293 Bordetella bronchiseptica RB50 2663717 NP_887285.1 CDS BB0735 NC_002927.3 770290 771057 D Similar to the N-terminal region of Escherichia coli 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpaG SWALL:HPAG_ECOLI (SWALL:Q46978) (429 aa) fasta scores: E(): 1.3e-42, 57.82% id in 211 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4122 SWALL:Q9HWQ9 (EMBL:AE004828) (259 aa) fasta scores: E(): 9.6e-58, 58.98% id in 256 aa; fumarylacetoacetate hydrolase family protein 770290..771057 Bordetella bronchiseptica RB50 2663120 NP_887286.1 CDS hpaE NC_002927.3 771067 772536 D Similar to Escherichia coli 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase HpaE SWALL:Q46979 (EMBL:Z37980) (488 aa) fasta scores: E(): 7.9e-133, 67.82% id in 488 aa, and to Salmonella typhimurium 4-hydroxyphenylacetate catabolism HpaE or Stm1102 SWALL:Q8ZQ48 (EMBL:AE008747) (488 aa) fasta scores: E(): 2.5e-133, 68.03% id in 488 aa; 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 771067..772536 Bordetella bronchiseptica RB50 2663091 NP_887287.1 CDS hpaD NC_002927.3 772533 773402 D Similar to Pseudomonas sp. DJ-12 homoprotocatechuate 2,3-dioxygenase HpaD SWALL:Q93A27 (EMBL:AF433158) (287 aa) fasta scores: E(): 1.8e-101, 80.35% id in 285 aa, and to Escherichia coli 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD SWALL:Q46980 (EMBL:Z37980) (282 aa) fasta scores: E(): 8.1e-78, 66.54% id in 281 aa; homoprotocatechuate 2,3-dioxygenase 772533..773402 Bordetella bronchiseptica RB50 2663735 NP_887288.1 CDS hpaF NC_002927.3 773404 773841 D Similar to Escherichia coli 5-carboxymethyl-2-hydroxymuconate delta-isomerase HpaF SWALL:Q46981 (EMBL:Z37980) (125 aa) fasta scores: E(): 0.008, 25.71% id in 140 aa, and to Deinococcus radiodurans 5-carboxymethyl-2-hydroxymuconate isomerase Dra0227 SWALL:Q9RYT1 (EMBL:AE001863) (128 aa) fasta scores: E(): 0.00078, 31.69% id in 142 aa; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 773404..773841 Bordetella bronchiseptica RB50 2663784 NP_887289.1 CDS hpcG NC_002927.3 773841 774656 D Similar to Rhodococcus sp 2-oxo-hepta-3-ene-1,7-dioic acid hydratase BphE or EtbE SWALL:O05150 (EMBL:D78322) (267 aa) fasta scores: E(): 3.6e-61, 61.11% id in 270 aa, and to Escherichia coli 2-oxo-hepta-3-ene-1,7-dioic acid hydratase HpcG SWALL:HPCG_ECOLI (SWALL:P42270) (264 aa) fasta scores: E(): 2e-52, 56.27% id in 263 aa; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 773841..774656 Bordetella bronchiseptica RB50 2663084 NP_887290.1 CDS hpaI NC_002927.3 774659 775468 D Similar to Escherichia coli 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH or HpaI SWALL:HPAI_ECOLI (SWALL:Q47098) (262 aa) fasta scores: E(): 4.3e-60, 64.88% id in 262 aa, and to Deinococcus radiodurans 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Dra0291 SWALL:Q9RYM1 (EMBL:AE001863) (277 aa) fasta scores: E(): 1.1e-65, 67.39% id in 273 aa; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 774659..775468 Bordetella bronchiseptica RB50 2663079 NP_887291.1 CDS BB0741 NC_002927.3 775542 776456 D Similar to Comamonas testosteroni TsaR SWALL:P94678 (EMBL:U32622) (298 aa) fasta scores: E(): 1.8e-19, 31.72% id in 290 aa, and to Escherichia coli transcriptional regulator AbgR or b1339 SWALL:ABGR_ECOLI (SWALL:P77744) (302 aa) fasta scores: E(): 4.3e-19, 26.78% id in 295 aa; LysR family transcriptional regulator 775542..776456 Bordetella bronchiseptica RB50 2663086 NP_887292.1 CDS BB0742 NC_002927.3 776599 777576 D Similar to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.2e-34, 38.94% id in 303 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 4.4e-33, 36.47% id in 318 aa; hypothetical protein 776599..777576 Bordetella bronchiseptica RB50 2663592 NP_887293.1 CDS BB0743 NC_002927.3 777604 779280 D Similar to Citrobacter freundii valine-sensitive acetohydroxy acid synthase SWALL:P94783 (EMBL:D89674) (561 aa) fasta scores: E(): 5.2e-35, 30.03% id in 536 aa, and to Rhizobium meliloti acetolactate synthase isozyme I large subunit protein IlvB1 or r00567 or smc02263 SWALL:Q92S59 (EMBL:AL591784) (537 aa) fasta scores: E(): 3.6e-42, 35.49% id in 541 aa; hypothetical protein 777604..779280 Bordetella bronchiseptica RB50 2663518 NP_887294.1 CDS BB0744 NC_002927.3 779277 780716 D Similar to Rhodococcus ruber 6-oxolauric acid dehydrogenase CddD SWALL:Q938F1 (EMBL:AY052630) (474 aa) fasta scores: E(): 1.9e-68, 43.46% id in 474 aa, and to Deinococcus radiodurans aldehyde dehydrogenase Dra0126 SWALL:Q9RZ27 (EMBL:AE001862) (495 aa) fasta scores: E(): 7.5e-68, 46.48% id in 469 aa; aldehyde dehydrogenase 779277..780716 Bordetella bronchiseptica RB50 2663835 NP_887295.1 CDS BB0745 NC_002927.3 780822 781784 D Similar to Pseudomonas sp. lipase LipP SWALL:O52270 (EMBL:AF034088) (308 aa) fasta scores: E(): 8.7e-33, 41.4% id in 285 aa, and to Mycobacterium tuberculosis carboxylesterase family protein rv1399c or mtcy21b4.16c or mt1443 SWALL:P71667 (EMBL:Z80108) (319 aa) fasta scores: E(): 5.1e-33, 44.89% id in 274 aa; lipase 780822..781784 Bordetella bronchiseptica RB50 2659782 NP_887296.1 CDS BB0746 NC_002927.3 781795 782400 R Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa4987 SWALL:Q9HUH8 (EMBL:AE004911) (199 aa) fasta scores: E(): 4.2e-15, 35.29% id in 187 aa, and to Rhizobium loti hypothetical protein Mll7669 SWALL:Q985H7 (EMBL:AP003012) (205 aa) fasta scores: E(): 1.6e-11, 33.15% id in 190 aa; transcriptional regulator complement(781795..782400) Bordetella bronchiseptica RB50 2659783 NP_887297.1 CDS BB0747 NC_002927.3 782421 783422 R Similar to Variovorax paradoxus, and Burkholderia cepacia 2,4-diphenoxyacetic acid gene cluster SWALL:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 6.1e-38, 40.38% id in 312 aa, and to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.8e-40, 41.87% id in 320 aa; hypothetical protein complement(782421..783422) Bordetella bronchiseptica RB50 2659795 NP_887298.1 CDS BB0748 NC_002927.3 783714 784088 D Weakly similar to Escherichia coli O157:H7 z3937 protein z3937 or ecs3506 SWALL:Q8X978 (EMBL:AE005493) (131 aa) fasta scores: E(): 0.22, 27.61% id in 105 aa; hypothetical protein 783714..784088 Bordetella bronchiseptica RB50 2659820 NP_887299.1 CDS BB0749 NC_002927.3 784138 784476 D Similar to Mycobacterium tuberculosis hypothetical 10.8 kDa protein rv1214c or mtci364.26c or mt1252 SWALL:O05315 (EMBL:Z93777) (110 aa) fasta scores: E(): 7.2, 28.44% id in 109 aa; lipoprotein 784138..784476 Bordetella bronchiseptica RB50 2659838 NP_887300.1 CDS BB0750 NC_002927.3 784486 785295 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(784486..785295) Bordetella bronchiseptica RB50 2659843 NP_887301.1 CDS BB0751 NC_002927.3 785331 786146 R ortholog of Bordetella pertussis (BX470248) BP3187; Similar to Cavia sp peroxisomal trans 2-enoyl CoA reductase SWALL:Q9JIF5 (EMBL:AF232010) (302 aa) fasta scores: E(): 3.4e-26, 39.92% id in 253 aa, and to Rattus norvegicus short-chain dehydrogenase/reductase MrnA, complete cds SWALL:Q9WVK3 (EMBL:AF099742) (303 aa) fasta scores: E(): 6.3e-27, 39.14% id in 258 aa; short-chain dehydrogenase complement(785331..786146) Bordetella bronchiseptica RB50 2659862 NP_887302.1 CDS BB0752 NC_002927.3 786193 787287 R ortholog of Bordetella pertussis (BX470248) BP3188; Similar to Streptomyces coelicolor hypothetical protein sco2032 or sc3a3.10 SWALL:Q9S2Y3 (EMBL:AL109849) (404 aa) fasta scores: E(): 7.9e-21, 33.93% id in 330 aa, and to Rhizobium loti hypothetical protein Mlr6096 SWALL:Q98A97 (EMBL:AP003008) (387 aa) fasta scores: E(): 1.6e-19, 32.78% id in 305 aa; hypothetical protein complement(786193..787287) Bordetella bronchiseptica RB50 2659883 NP_887303.1 CDS BB0753 NC_002927.3 787280 788614 R ortholog of Bordetella pertussis (BX470248) BP3189; Similar to Archaeoglobus fulgidus coenzyme F390 synthetase af2013 SWALL:O28266 (EMBL:AE000964) (440 aa) fasta scores: E(): 8e-55, 39.18% id in 444 aa, and to Methanosarcina acetivorans coenzyme A ligase ma2244 SWALL:Q8TNN9 (EMBL:AE010911) (433 aa) fasta scores: E(): 1.7e-47, 37.81% id in 439 aa; coenzyme A ligase complement(787280..788614) Bordetella bronchiseptica RB50 2659925 NP_887304.1 CDS BB0754 NC_002927.3 788568 789251 R ortholog of Bordetella pertussis (BX470248) BP3190; Similar to Bacillus halodurans transcriptional regulator bh2958 SWALL:Q9K8P5 (EMBL:AP001517) (215 aa) fasta scores: E(): 5.2e-09, 24.73% id in 190 aa, and to Deinococcus radiodurans transcriptional regulator, tetr family dr2376 SWALL:Q9RRV9 (EMBL:AE002068) (197 aa) fasta scores: E(): 5.1e-08, 27.97% id in 193 aa; TetR family transcriptional regulator complement(788568..789251) Bordetella bronchiseptica RB50 2659908 NP_887305.1 CDS BB0755 NC_002927.3 789277 790440 R ortholog of Bordetella pertussis (BX470248) BP3191; Similar to Thermoanaerobacter tengcongensis acyl-CoA dehydrogenases CaiA or tte0545 SWALL:Q8RC91 (EMBL:AE013024) (380 aa) fasta scores: E(): 2.7e-50, 40.1% id in 379 aa, and to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase pa2552 SWALL:Q9I0T2 (EMBL:AE004683) (375 aa) fasta scores: E(): 2.7e-49, 40.22% id in 363 aa; acyl-CoA dehyrdogenase complement(789277..790440) Bordetella bronchiseptica RB50 2659610 NP_887306.1 CDS BB0756 NC_002927.3 790437 791438 R ortholog of Bordetella pertussis (BX470248) BP3192; Similar to Deinococcus radiodurans branched-chain amino acid ABC transporter permease Dr0282 SWALL:Q9RXM8 (EMBL:AE001889) (334 aa) fasta scores: E(): 2.3e-21, 31.77% id in 321 aa, and to Archaeoglobus fulgidus branched-chain amino acid ABC transporter permease Af0824 SWALL:O29434 (EMBL:AE001047) (323 aa) fasta scores: E(): 4.6e-21, 28.57% id in 294 aa; branched-chain amino acid ABC transporter permease complement(790437..791438) Bordetella bronchiseptica RB50 2660507 NP_887307.1 CDS BB0757 NC_002927.3 791438 792310 R ortholog of Bordetella pertussis (BX470248) BP3193; Similar to Deinococcus radiodurans branched-chain amino acid ABC transporter permease dr0281 SWALL:Q9RXM9 (EMBL:AE001889) (285 aa) fasta scores: E(): 1.8e-25, 31.57% id in 285 aa, and to Brucella melitensis high-affinity branched-chain amino acid transport system permease livh / high-affinity branched-chain amino acid transport ATP-binding protein livg bmeii0874 SWALL:Q8YBM5 (EMBL:AE009721) (916 aa) fasta scores: E(): 1.3e-26, 34.5% id in 284 aa; branched-chain amino acid ABC transporter permease complement(791438..792310) Bordetella bronchiseptica RB50 2660521 NP_887308.1 CDS BB0758 NC_002927.3 792307 793056 R ortholog of Bordetella pertussis (BX470248) BP3194; Similar to Deinococcus radiodurans branched-chain amino acid ABC transporter ATP-binding protein dra0260 SWALL:Q9RYP9 (EMBL:AE001863) (238 aa) fasta scores: E(): 4.8e-30, 49.19% id in 248 aa, and to Ralstonia solanacearum probable amino-acid composite ATP-binding transmembrane ABC transporter protein rsp0707 or rs01742 SWALL:Q8XRX4 (EMBL:AL646080) (247 aa) fasta scores: E(): 5e-30, 45.37% id in 238 aa; branched-chain amino acid ABC transporter ATP-binding protein complement(792307..793056) Bordetella bronchiseptica RB50 2660593 NP_887309.1 CDS BB0759 NC_002927.3 793053 793844 R ortholog of Bordetella pertussis (BX470248) BP3195; ABC transporter ATP-binding protein complement(793053..793844) Bordetella bronchiseptica RB50 2658950 NP_887310.1 CDS BB0761 NC_002927.3 793841 794980 R ortholog of Bordetella pertussis (BX470248) BP3196; Similar to Citrobacter freundii leu/ile/val-binding protein precursor LivJ SWALL:LIVJ_CITFR (SWALL:P25399) (367 aa) fasta scores: E(): 2.4e-14, 28.41% id in 359 aa, and to Rhizobium loti ABC transporter binding protein mlr7721 SWALL:Q985D9 (EMBL:AP003012) (399 aa) fasta scores: E(): 4e-17, 26.68% id in 371 aa; branched-chain amino acid ABC transporter binding protein complement(793841..794980) Bordetella bronchiseptica RB50 2661119 NP_887311.1 CDS BB0762 NC_002927.3 795305 796072 D ortholog of Bordetella pertussis (BX470248) BP3197; Similar to Bos taurus 3-hydroxyacyl-CoA dehydrogenase type II HadH2 SWALL:HCD2_BOVIN (SWALL:O02691) (261 aa) fasta scores: E(): 4e-41, 52.17% id in 253 aa, and to Mycobacterium tuberculosis oxidoreductase, short-chain dehydrogenase/reductase family rv1144 or mtci65.11 or mt1177 SWALL:O06544 (EMBL:Z95584) (250 aa) fasta scores: E(): 4.8e-47, 58.98% id in 256 aa; short chain dehydrogenase 795305..796072 Bordetella bronchiseptica RB50 2660286 NP_887312.1 CDS BB0763 NC_002927.3 796105 796887 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 796105..796887 Bordetella bronchiseptica RB50 2661252 NP_887313.1 CDS BB0764 NC_002927.3 796891 797280 D ortholog of Bordetella pertussis (BX470248) BP3199; Similar to Archaeoglobus fulgidus hypothetical protein Af1292 SWALL:O28977 (EMBL:AE001015) (136 aa) fasta scores: E(): 5.3e-05, 31.62% id in 117 aa, and to Methanopyrus kandleri predicted nucleic-acid-binding protein containing a zn-ribbon mk1377 SWALL:Q8TVL2 (EMBL:AE010431) (134 aa) fasta scores: E(): 0.0002, 33.02% id in 109 aa; hypothetical protein 796891..797280 Bordetella bronchiseptica RB50 2662092 NP_887314.1 CDS BB0765 NC_002927.3 797277 798428 D ortholog of Bordetella pertussis (BX470248) BP3200; Similar to Rhodococcus sp. NCIMB 9784 non-specific lipid carrier-like protein CampC SWALL:Q93TU4 (EMBL:AF323755) (408 aa) fasta scores: E(): 3.7e-23, 31% id in 387 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1016 SWALL:Q9I4V7 (EMBL:AE004534) (383 aa) fasta scores: E(): 1.2e-90, 62.14% id in 383 aa; thiolase 797277..798428 Bordetella bronchiseptica RB50 2661866 NP_887315.1 CDS BB0766 NC_002927.3 798425 799300 D ortholog of Bordetella pertussis (BX470248) BP3201; Similar to Pseudomonas aeruginosa PhaJ2 or pa1018 SWALL:Q9LBK1 (EMBL:AB040026) (288 aa) fasta scores: E(): 8.9e-40, 46.45% id in 282 aa, and to Mycobacterium tuberculosis maoc family protein rv3389c or mtv004.47c or mt3496 SWALL:Q11198 (EMBL:U27357) (290 aa) fasta scores: E(): 1e-31, 41.61% id in 298 aa; hydratase 798425..799300 Bordetella bronchiseptica RB50 2661781 NP_887316.1 CDS BB0767 NC_002927.3 799336 800424 D ortholog of Bordetella pertussis (BX470248) BP3202; Similar to Xanthomonas campestris hypothetical protein Xcc2124 SWALL:AAM41409 (EMBL:AE012319) (354 aa) fasta scores: E(): 1.3e-28, 32.7% id in 370 aa, and to Arabidopsis thaliana hypothetical 44.2 kDa protein t22a6.50 or at4g24220 or at4g24220, t22a6.50 SWALL:Q9STX2 (EMBL:AL078637) (388 aa) fasta scores: E(): 1.3e-17, 30.42% id in 378 aa; hypothetical protein 799336..800424 Bordetella bronchiseptica RB50 2660257 NP_887317.1 CDS BB0768 NC_002927.3 800458 801438 R Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 2.2e-40, 39.56% id in 321 aa, and to Rhizobium meliloti hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 5.2e-38, 39.24% id in 316 aa; hypothetical protein complement(800458..801438) Bordetella bronchiseptica RB50 2661756 NP_887318.1 CDS BB0769 NC_002927.3 801540 802562 R Similar to Streptomyces coelicolor hypothetical protein sco6307 or scif3.09C SWALL:Q93RT4 (EMBL:AL590982) (320 aa) fasta scores: E(): 6.7e-06, 30.83% id in 334 aa, and to Arthrobacter nicotinovorans hypothetical polyketide cyclase SWALL:Q93NG4 (EMBL:AF373840) (310 aa) fasta scores: E(): 0.0014, 30.26% id in 337 aa; hypothetical protein complement(801540..802562) Bordetella bronchiseptica RB50 2661662 NP_887319.1 CDS BB0770 NC_002927.3 802844 803641 R Similar to Ralstonia solanacearum probable transcription regulator protein rsc3411 or rs01720 SWALL:Q8XTY4 (EMBL:AL646075) (262 aa) fasta scores: E(): 5.1e-31, 42% id in 250 aa, and to Rhodococcus opacus PcaR pcaR SWALL:O67983 (EMBL:AF003947) (265 aa) fasta scores: E(): 1.3e-20, 36.32% id in 234 aa; transcriptional regulator complement(802844..803641) Bordetella bronchiseptica RB50 2661710 NP_887320.1 CDS BB0771 NC_002927.3 803770 805077 D Similar to Proteus mirabilis amino acid deaminase AaD SWALL:Q51890 (EMBL:U35383) (473 aa) fasta scores: E(): 1.9e-39, 34.33% id in 431 aa, and to Agrobacterium tumefaciens oxidoreductase AgaE or atu3050 or agr_l_3510 SWALL:Q8UBG6 (EMBL:AE009235) (449 aa) fasta scores: E(): 2.1e-67, 45.54% id in 426 aa; FAD dependent oxidoreductase 803770..805077 Bordetella bronchiseptica RB50 2660135 NP_887321.1 CDS BB0772 NC_002927.3 805074 806147 D Similar to Brevibacillus borstelensis thermostable dipeptidase Bdp SWALL:Q9KH70 (EMBL:AF268476) (307 aa) fasta scores: E(): 1.9e-16, 33.69% id in 184 aa, and to Ralstonia solanacearum dipeptidase rsp0056 or rs02031 SWALL:Q8XTQ0 (EMBL:AL646076) (323 aa) fasta scores: E(): 4.6e-33, 37.95% id in 332 aa; dipeptidase 805074..806147 Bordetella bronchiseptica RB50 2660147 NP_887322.1 CDS BB0773 NC_002927.3 806164 807132 D Similar to Alcaligenes eutrophus hypothetical 35.6 kDa protein in gbd 5'region precursor SWALL:YGB7_ALCEU (SWALL:Q44018) (327 aa) fasta scores: E(): 2e-47, 42.3% id in 312 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 4.4e-25, 29.19% id in 322 aa; hypothetical protein 806164..807132 Bordetella bronchiseptica RB50 2660157 NP_887323.1 CDS BB0774 NC_002927.3 807255 810914 R no significant database matches; hypothetical protein complement(807255..810914) Bordetella bronchiseptica RB50 2659355 NP_887324.1 CDS BB0775 NC_002927.3 811043 812113 D Similar to Agrobacterium tumefaciens transcriptional regulator, AraC family atu4132 or agr_l_1441 SWALL:Q8U8G0 (EMBL:AE009344) (347 aa) fasta scores: E(): 1.3e-06, 27.88% id in 269 aa, and to Caulobacter crescentus transcriptional regulator, AraC family cc0713 SWALL:Q9AA93 (EMBL:AE005746) (446 aa) fasta scores: E(): 2.2e-05, 25.42% id in 354 aa; transcriptional regulator 811043..812113 Bordetella bronchiseptica RB50 2660168 NP_887325.1 CDS BB0776 NC_002927.3 812110 812829 R no significant database matches; hypothetical protein complement(812110..812829) Bordetella bronchiseptica RB50 2661813 NP_887326.1 CDS BB0777 NC_002927.3 812826 814037 R no significant database matches; hypothetical protein complement(812826..814037) Bordetella bronchiseptica RB50 2659257 NP_887327.1 CDS BB0778 NC_002927.3 814034 815071 R no significant database matches; hypothetical protein complement(814034..815071) Bordetella bronchiseptica RB50 2661702 NP_887328.1 CDS BB0779 NC_002927.3 815064 817331 R no significant database matches; hypothetical protein complement(815064..817331) Bordetella bronchiseptica RB50 2661635 NP_887329.1 CDS BB0780 NC_002927.3 817328 818581 R Similar to Pseudomonas putida type 4 fimbrial assembly protein PilC SWALL:PILC_PSEPU (SWALL:P36641) (401 aa) fasta scores: E(): 7.2e-28, 29.68% id in 411 aa, and to Pseudomonas aeruginosa general secretion pathway protein F XcpS or pa3102 SWALL:GSPF_PSEAE (SWALL:Q00513) (405 aa) fasta scores: E(): 5.1e-27, 27.42% id in 412 aa; type II secretion system protein complement(817328..818581) Bordetella bronchiseptica RB50 2661713 NP_887330.1 CDS BB0781 NC_002927.3 818578 820203 R Similar to Pseudomonas putida XcpR protein SWALL:Q52292 (EMBL:X81085) (482 aa) fasta scores: E(): 8.6e-51, 43.21% id in 405 aa, and to Vibrio cholerae general secretion pathway protein E EpsE or vc2732 SWALL:GSPE_VIBCH (SWALL:P37093) (503 aa) fasta scores: E(): 6.2e-50, 38.51% id in 457 aa; type II secretion system protein complement(818578..820203) Bordetella bronchiseptica RB50 2663812 NP_887331.1 CDS BB0782 NC_002927.3 820271 821650 R Similar to Aeromonas hydrophila general secretion pathway protein A ExeA SWALL:GSPA_AERHY (SWALL:P45754) (547 aa) fasta scores: E(): 8.2e-19, 37.69% id in 260 aa, and to Vibrio cholerae general secretion pathway protein A vc2445 SWALL:Q9KPC7 (EMBL:AE004314) (529 aa) fasta scores: E(): 5.1e-18, 32.55% id in 301 aa; type II secretion system protein complement(820271..821650) Bordetella bronchiseptica RB50 2661696 NP_887332.1 CDS BB0783 NC_002927.3 821685 822587 R no significant database matches; hypothetical protein complement(821685..822587) Bordetella bronchiseptica RB50 2659383 NP_887333.1 CDS BB0784 NC_002927.3 822584 824221 R Similar to Vibrio cholerae mannose-sensitive hemagglutinin D MshD SWALL:Q56673 (EMBL:L19085) (559 aa) fasta scores: E(): 1.8e-19, 24.1% id in 560 aa, and to Xanthomonas campestris general secretion pathway protein D precursor XpsD or PefD or xcc0670 SWALL:GSPD_XANCP (SWALL:P29041) (759 aa) fasta scores: E(): 3.4e-14, 26.76% id in 426 aa; type II secretion system protein complement(822584..824221) Bordetella bronchiseptica RB50 2661678 NP_887334.1 CDS BB0785 NC_002927.3 824235 824999 R no significant database matches; hypothetical protein complement(824235..824999) Bordetella bronchiseptica RB50 2659166 NP_887335.1 CDS BB0786 NC_002927.3 824996 825595 R no significant database matches; hypothetical protein complement(824996..825595) Bordetella bronchiseptica RB50 2659327 NP_887336.1 CDS BB0787 NC_002927.3 825621 826130 R no significant database matches; hypothetical protein complement(825621..826130) Bordetella bronchiseptica RB50 2659168 NP_887337.1 CDS BB0788 NC_002927.3 826127 827497 R no significant database matches; hypothetical protein complement(826127..827497) Bordetella bronchiseptica RB50 2660281 NP_887338.1 CDS BB0789 NC_002927.3 827502 828008 R no significant database matches; hypothetical protein complement(827502..828008) Bordetella bronchiseptica RB50 2661193 NP_887339.1 CDS BB0790 NC_002927.3 828015 828809 R Similar to Escherichia coli CFA/III pilin CofA SWALL:Q59393 (EMBL:D37957) (238 aa) fasta scores: E(): 7, 25.74% id in 202 aa, and to Escherichia coli hypothetical type II secretion protein GspG gspG SWALL:Q8VRM7 (EMBL:AF426313) (151 aa) fasta scores: E(): 1, 28.7% id in 108 aa; type II secretion system protein complement(828015..828809) Bordetella bronchiseptica RB50 2660230 NP_887340.1 CDS pilT NC_002927.3 828844 829884 R Similar to Pseudomonas aeruginosa twitching mobility protein PilT or pa0395 SWALL:PILT_PSEAE (SWALL:P24559) (344 aa) fasta scores: E(): 1.1e-74, 66.37% id in 339 aa, and to Xanthomonas axonopodis twitching motility protein PilT or xac2924 or xcc2755 SWALL:AAM42027 (EMBL:AE011934) (345 aa) fasta scores: E(): 1.6e-83, 70.46% id in 342 aa; twitching mobility protein complement(828844..829884) Bordetella bronchiseptica RB50 2661867 NP_887341.1 CDS gspO NC_002927.3 830131 830958 D Similar to Burkholderia pseudomallei type 4 prepilin-like proteins leader peptide processing enzyme [includes: leader peptidase gspO SWALL:LEP4_BURPS (SWALL:Q9ZF70) (275 aa) fasta scores: E(): 5.3e-41, 51.35% id in 259 aa, and to Erwinia chrysanthemi type 4 prepilin-like proteins leader peptide processing enzyme outO SWALL:LEP4_ERWCH (SWALL:P31711) (283 aa) fasta scores: E(): 3.7e-37, 49.43% id in 267 aa; type 4 prepilin-like proteins leader peptide processing enzyme 830131..830958 Bordetella bronchiseptica RB50 2662204 NP_887342.1 CDS vrgS NC_002927.3 831107 833470 D Similar to Salmonella enterica subsp. enterica serovar Typhimurium VrgS protein SWALL:Q93IR3 (EMBL:AJ320483) (729 aa) fasta scores: E(): 5.1e-85, 41.82% id in 593 aa, and to Escherichia coli VgrE protein SWALL:O52660 (EMBL:AF044499) (702 aa) fasta scores: E(): 4.4e-54, 29.18% id in 699 aa; hypothetical protein 831107..833470 Bordetella bronchiseptica RB50 2659637 NP_887343.1 CDS BB0794 NC_002927.3 833487 833900 D hypothetical protein 833487..833900 Bordetella bronchiseptica RB50 2660256 NP_887344.1 CDS BB0795 NC_002927.3 833897 836521 D hypothetical protein 833897..836521 Bordetella bronchiseptica RB50 2661800 NP_887345.1 CDS BB0796 NC_002927.3 836511 837572 D hypothetical protein 836511..837572 Bordetella bronchiseptica RB50 2660166 NP_887346.1 CDS BB0797 NC_002927.3 837603 838511 D hypothetical protein 837603..838511 Bordetella bronchiseptica RB50 2660201 NP_887347.1 CDS BB0798 NC_002927.3 838552 839112 D hypothetical protein 838552..839112 Bordetella bronchiseptica RB50 2660159 NP_887348.1 CDS BB0799 NC_002927.3 839515 840564 D hypothetical protein 839515..840564 Bordetella bronchiseptica RB50 2660227 NP_887349.1 CDS BB0800 NC_002927.3 840607 841170 D hypothetical protein 840607..841170 Bordetella bronchiseptica RB50 2660272 NP_887350.1 CDS BB0801 NC_002927.3 841192 842694 D hypothetical protein 841192..842694 Bordetella bronchiseptica RB50 2660252 NP_887351.1 CDS BB0802 NC_002927.3 842770 843237 D hypothetical protein 842770..843237 Bordetella bronchiseptica RB50 2661666 NP_887352.1 CDS BB0803 NC_002927.3 843287 844096 D hypothetical protein 843287..844096 Bordetella bronchiseptica RB50 2661632 NP_887353.1 CDS BB0804 NC_002927.3 844093 844611 D hypothetical protein 844093..844611 Bordetella bronchiseptica RB50 2661689 NP_887354.1 CDS BB0805 NC_002927.3 844611 846524 D hypothetical protein 844611..846524 Bordetella bronchiseptica RB50 2661675 NP_887355.1 CDS BB0806 NC_002927.3 846559 847218 D hypothetical protein 846559..847218 Bordetella bronchiseptica RB50 2661784 NP_887356.1 CDS BB0807 NC_002927.3 847215 848309 D hypothetical protein 847215..848309 Bordetella bronchiseptica RB50 2661708 NP_887357.1 CDS BB0808 NC_002927.3 848306 848839 D hypothetical protein 848306..848839 Bordetella bronchiseptica RB50 2661639 NP_887358.1 CDS BB0809 NC_002927.3 848829 849206 D hypothetical protein 848829..849206 Bordetella bronchiseptica RB50 2661799 NP_887359.1 CDS BB0810 NC_002927.3 849230 851839 D ATPase 849230..851839 Bordetella bronchiseptica RB50 2661638 NP_887360.1 CDS BB0811 NC_002927.3 851938 852738 R hypothetical protein complement(851938..852738) Bordetella bronchiseptica RB50 2661882 NP_887361.1 CDS BB0812 NC_002927.3 852766 853161 R lipoprotein complement(852766..853161) Bordetella bronchiseptica RB50 2660068 NP_887362.1 CDS BB0813 NC_002927.3 853426 853968 D lipoprotein 853426..853968 Bordetella bronchiseptica RB50 2661923 NP_887363.1 CDS BB0814 NC_002927.3 854014 855348 D hypothetical protein 854014..855348 Bordetella bronchiseptica RB50 2661892 NP_887364.1 CDS BB0815 NC_002927.3 855369 856649 D hypothetical protein 855369..856649 Bordetella bronchiseptica RB50 2661907 NP_887365.1 CDS BB0816 NC_002927.3 856646 860251 D hypothetical protein 856646..860251 Bordetella bronchiseptica RB50 2661919 NP_887366.1 CDS BB0817 NC_002927.3 860248 860982 D hypothetical protein 860248..860982 Bordetella bronchiseptica RB50 2661896 NP_887367.1 CDS BB0818 NC_002927.3 861007 862185 D hypothetical protein 861007..862185 Bordetella bronchiseptica RB50 2661911 NP_887368.1 CDS BB0819 NC_002927.3 862283 863449 D calcium/proton antiporter 862283..863449 Bordetella bronchiseptica RB50 2662253 NP_887369.1 CDS BB0820 NC_002927.3 863623 865035 D lipoprotein 863623..865035 Bordetella bronchiseptica RB50 2662258 NP_887370.1 CDS BB0821 NC_002927.3 865043 868006 R autotransporter complement(865043..868006) Bordetella bronchiseptica RB50 2662263 NP_887371.1 CDS BB0822 NC_002927.3 868456 869934 D ortholog of Bordetella pertussis (BX470248) BP3092; phospholipase D 868456..869934 Bordetella bronchiseptica RB50 2662285 NP_887372.1 CDS modD NC_002927.3 869941 871050 R ortholog of Bordetella pertussis (BX470248) BP3093; molybdenum transport ATP-binding protein complement(869941..871050) Bordetella bronchiseptica RB50 2662299 NP_887373.1 CDS modC NC_002927.3 871062 871742 R ortholog of Bordetella pertussis (BX470248) BP3094; molybdenum transport system permease complement(871062..871742) Bordetella bronchiseptica RB50 2662321 NP_887374.1 CDS modB NC_002927.3 871764 872519 R ortholog of Bordetella pertussis (BX470248) BP3095; molybdate ABC transporter substrate-binding protein complement(871764..872519) Bordetella bronchiseptica RB50 2662340 NP_887375.1 CDS BB0826 NC_002927.3 872655 873539 R ortholog of Bordetella pertussis (BX470248) BP3096; hydrolase complement(872655..873539) Bordetella bronchiseptica RB50 2662335 NP_887376.1 CDS BB0827 NC_002927.3 873564 874208 D ortholog of Bordetella pertussis (BX470248) BP3097; hypothetical protein 873564..874208 Bordetella bronchiseptica RB50 2662350 NP_887377.1 CDS BB0828 NC_002927.3 874310 874432 R ortholog of Bordetella pertussis (BX470248) BP3098; hypothetical protein complement(874310..874432) Bordetella bronchiseptica RB50 2662347 NP_887378.1 CDS BB0829 NC_002927.3 874478 874777 R ortholog of Bordetella pertussis (BX470248) BP3099; hypothetical protein complement(874478..874777) Bordetella bronchiseptica RB50 2662364 NP_887379.1 CDS BB0830 NC_002927.3 874929 875354 R ortholog of Bordetella pertussis (BX470248) BP3100; hypothetical protein complement(874929..875354) Bordetella bronchiseptica RB50 2662369 NP_887380.1 CDS BB0831 NC_002927.3 875424 875777 R hypothetical protein complement(875424..875777) Bordetella bronchiseptica RB50 2662356 NP_887381.1 CDS BB0832 NC_002927.3 875845 877944 R ortholog of Bordetella pertussis (BX470248) BP3101; TonB-dependent receptor complement(875845..877944) Bordetella bronchiseptica RB50 2662374 NP_887382.1 CDS BB0833 NC_002927.3 877941 878444 R ortholog of Bordetella pertussis (BX470248) BP3102; regulatory protein complement(877941..878444) Bordetella bronchiseptica RB50 2662393 NP_887383.1 CDS rocD NC_002927.3 878523 879764 D ortholog of Bordetella pertussis (BX470248) BP0539; ornithine--oxo-acid transaminase 878523..879764 Bordetella bronchiseptica RB50 2662403 NP_887384.1 CDS BB0835 NC_002927.3 879761 880705 D ortholog of Bordetella pertussis (BX470248) BP0538; arginase 879761..880705 Bordetella bronchiseptica RB50 2662419 NP_887385.1 CDS BB0836 NC_002927.3 880722 881531 R ortholog of Bordetella pertussis (BX470248) BP0176; two-component response regulator complement(880722..881531) Bordetella bronchiseptica RB50 2662445 NP_887386.1 CDS BB0837 NC_002927.3 881844 882371 D ortholog of Bordetella pertussis (BX470248) BP0177; lipoprotein 881844..882371 Bordetella bronchiseptica RB50 2662458 NP_887387.1 CDS BB0838 NC_002927.3 882463 883278 D ortholog of Bordetella pertussis (BX470248) BP0178; lipoprotein 882463..883278 Bordetella bronchiseptica RB50 2662473 NP_887388.1 CDS BB0839 NC_002927.3 883339 884073 D ortholog of Bordetella pertussis (BX470248) BP0179; rhodanese superfamily protein 883339..884073 Bordetella bronchiseptica RB50 2662487 NP_887389.1 CDS metG NC_002927.3 884111 886189 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(884111..886189) Bordetella bronchiseptica RB50 2662481 NP_887390.1 CDS BB0841 NC_002927.3 886439 886711 R ortholog of Bordetella pertussis (BX470248) BP0181; hypothetical protein complement(886439..886711) Bordetella bronchiseptica RB50 2662507 NP_887391.1 CDS BB0842 NC_002927.3 886810 887898 D ortholog of Bordetella pertussis (BX470248) BP0182; iron sulfur binding protein 886810..887898 Bordetella bronchiseptica RB50 2662514 NP_887392.1 CDS BB0843 NC_002927.3 887902 889806 D ortholog of Bordetella pertussis (BX470248) BP0183; hypothetical protein 887902..889806 Bordetella bronchiseptica RB50 2662524 NP_887393.1 CDS BB0844 NC_002927.3 889803 893477 D ortholog of Bordetella pertussis (BX470248) BP0184; hypothetical protein 889803..893477 Bordetella bronchiseptica RB50 2662526 NP_887394.1 CDS dcd NC_002927.3 893538 894101 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 893538..894101 Bordetella bronchiseptica RB50 2662539 NP_887395.1 CDS BB0846 NC_002927.3 894109 894531 R ortholog of Bordetella pertussis (BX470248) BP0186; hypothetical protein complement(894109..894531) Bordetella bronchiseptica RB50 2662542 NP_887396.1 CDS BB0847 NC_002927.3 894559 894978 R ortholog of Bordetella pertussis (BX470248) BP0187; lyase complement(894559..894978) Bordetella bronchiseptica RB50 2662564 NP_887397.1 CDS BB0848 NC_002927.3 895007 895525 R ortholog of Bordetella pertussis (BX470248) BP0188; acetyltransferase complement(895007..895525) Bordetella bronchiseptica RB50 2662568 NP_887398.1 CDS BB0849 NC_002927.3 895578 896075 D ortholog of Bordetella pertussis (BX470248) BP0189; hypothetical protein 895578..896075 Bordetella bronchiseptica RB50 2662574 NP_887399.1 CDS BB0850 NC_002927.3 896230 898500 D ortholog of Bordetella pertussis (BX470248) BP0190; Orn/Arg/Lys decarboxylase 896230..898500 Bordetella bronchiseptica RB50 2662585 NP_887400.1 CDS BB0851 NC_002927.3 898544 899776 D ortholog of Bordetella pertussis (BX470248) BP0191; hypothetical protein 898544..899776 Bordetella bronchiseptica RB50 2659126 NP_887401.1 CDS sodA NC_002927.3 899822 900514 D ortholog of Bordetella pertussis (BX470248) BP0193; superoxide dismutase 899822..900514 Bordetella bronchiseptica RB50 2659228 NP_887402.1 CDS BB0853 NC_002927.3 900511 901404 D ortholog of Bordetella pertussis (BX470248) BP0194; metal transporter 900511..901404 Bordetella bronchiseptica RB50 2659709 NP_887403.1 CDS gcvT NC_002927.3 901799 902899 D catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 901799..902899 Bordetella bronchiseptica RB50 2660134 NP_887404.1 CDS gcvH NC_002927.3 903044 903355 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 903044..903355 Bordetella bronchiseptica RB50 2661701 NP_887405.1 CDS gcvP NC_002927.3 903415 906279 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 903415..906279 Bordetella bronchiseptica RB50 2661761 NP_887406.1 CDS BB0857 NC_002927.3 906634 907374 R ortholog of Bordetella pertussis (BX470248) BP0198; GntR family transcriptional regulator complement(906634..907374) Bordetella bronchiseptica RB50 2660222 NP_887407.1 CDS BB0858 NC_002927.3 907444 908655 D ortholog of Bordetella pertussis (BX470248) BP0199; hypothetical protein 907444..908655 Bordetella bronchiseptica RB50 2660262 NP_887408.1 CDS BB0859 NC_002927.3 908684 909652 D ortholog of Bordetella pertussis (BX470248) BP0200; hypothetical protein 908684..909652 Bordetella bronchiseptica RB50 2661178 NP_887409.1 CDS BB0860 NC_002927.3 909649 910482 D ortholog of Bordetella pertussis (BX470248) BP0201; enoyl-CoA hydratase 909649..910482 Bordetella bronchiseptica RB50 2659694 NP_887410.1 CDS BB0861 NC_002927.3 910533 912557 R hypothetical protein complement(910533..912557) Bordetella bronchiseptica RB50 2661718 NP_887411.1 CDS BB0862 NC_002927.3 912685 914133 R hypothetical protein complement(912685..914133) Bordetella bronchiseptica RB50 2661782 NP_887412.1 CDS BB0863 NC_002927.3 914309 915784 R ortholog of Bordetella pertussis (BX470248) BP3163; hypothetical protein complement(914309..915784) Bordetella bronchiseptica RB50 2660214 NP_887413.1 CDS BB0864 NC_002927.3 915828 917486 R ortholog of Bordetella pertussis (BX470248) BP3162; ABC transporter ATP-binding protein complement(915828..917486) Bordetella bronchiseptica RB50 2660247 NP_887414.1 CDS BB0865 NC_002927.3 917490 918389 R ortholog of Bordetella pertussis (BX470248) BP3161; peptide ABC transporter permease complement(917490..918389) Bordetella bronchiseptica RB50 2659270 NP_887415.1 CDS BB0866 NC_002927.3 918392 919333 R ortholog of Bordetella pertussis (BX470248) BP3160; ABC transporter permease complement(918392..919333) Bordetella bronchiseptica RB50 2660143 NP_887416.1 CDS BB0867 NC_002927.3 919379 920944 R ortholog of Bordetella pertussis (BX470248) BP3159; peptide ABC transporter substrate-binding protein complement(919379..920944) Bordetella bronchiseptica RB50 2661744 NP_887417.1 CDS mmsA NC_002927.3 921230 922723 R ortholog of Bordetella pertussis (BX470248) BP3158; methylmalonate-semialdehyde dehydrogenase complement(921230..922723) Bordetella bronchiseptica RB50 2660221 NP_887418.1 CDS BB0869 NC_002927.3 922755 924038 R catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase complement(922755..924038) Bordetella bronchiseptica RB50 2660200 NP_887419.1 CDS BB0870 NC_002927.3 924263 925720 D ortholog of Bordetella pertussis (BX470248) BP3156; GntR family transcriptional regulator 924263..925720 Bordetella bronchiseptica RB50 2661652 NP_887420.1 CDS folA NC_002927.3 925684 926181 R ortholog of Bordetella pertussis (BX470248) BP3155; dihydrofolate reductase complement(925684..926181) Bordetella bronchiseptica RB50 2661736 NP_887421.1 CDS thyA NC_002927.3 926212 927183 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(926212..927183) Bordetella bronchiseptica RB50 2660120 NP_887422.1 CDS BB0873 NC_002927.3 927236 927673 R ortholog of Bordetella pertussis (BX470248) BP3153; hypothetical protein complement(927236..927673) Bordetella bronchiseptica RB50 2661891 NP_887423.1 CDS BB0874 NC_002927.3 927797 928465 D ortholog of Bordetella pertussis (BX470248) BP3152; hypothetical protein 927797..928465 Bordetella bronchiseptica RB50 2661905 NP_887424.1 CDS BB0875 NC_002927.3 929193 930296 D ortholog of Bordetella pertussis (BX470248) BP3151; glycosyltransferase 929193..930296 Bordetella bronchiseptica RB50 2661914 NP_887425.1 CDS wbpO NC_002927.3 930303 931676 D ortholog of Bordetella pertussis (BX470248) BP3150; polysaccharide biosynthesis protein 930303..931676 Bordetella bronchiseptica RB50 2662259 NP_887426.1 CDS BB0877 NC_002927.3 931688 932713 D ortholog of Bordetella pertussis (BX470248) BP3149; UDP-N-acetylglucosamine C4 epimerase 931688..932713 Bordetella bronchiseptica RB50 2662314 NP_887427.1 CDS BB0878 NC_002927.3 932715 934085 D ortholog of Bordetella pertussis (BX470248) BP3148; hypothetical protein 932715..934085 Bordetella bronchiseptica RB50 2662324 NP_887428.1 CDS BB0879 NC_002927.3 934086 935222 D ortholog of Bordetella pertussis (BX470248) BP3147; glycosyltransferase 934086..935222 Bordetella bronchiseptica RB50 2662343 NP_887429.1 CDS BB0880 NC_002927.3 935269 937194 D ortholog of Bordetella pertussis (BX470248) BP3146; asparagine synthase 935269..937194 Bordetella bronchiseptica RB50 2662353 NP_887430.1 CDS BB0881 NC_002927.3 937191 938312 D ortholog of Bordetella pertussis (BX470248) BP3145; glycosyltransferase 937191..938312 Bordetella bronchiseptica RB50 2662410 NP_887431.1 CDS BB0882 NC_002927.3 938309 939463 D ortholog of Bordetella pertussis (BX470248) BP3144; glycosyltransferase 938309..939463 Bordetella bronchiseptica RB50 2662428 NP_887432.1 CDS BB0883 NC_002927.3 939460 940590 D ortholog of Bordetella pertussis (BX470248) BP3143; glycosyltransferase 939460..940590 Bordetella bronchiseptica RB50 2662438 NP_887433.1 CDS pgi NC_002927.3 940598 942163 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(940598..942163) Bordetella bronchiseptica RB50 2662471 NP_887434.1 CDS pgm NC_002927.3 942170 943552 R ortholog of Bordetella pertussis (BX470248) BP3141; phosphoglucomutase complement(942170..943552) Bordetella bronchiseptica RB50 2662525 NP_887435.1 CDS BB0886 NC_002927.3 943831 944442 D ortholog of Bordetella pertussis (BX470248) BP3140; hypothetical protein 943831..944442 Bordetella bronchiseptica RB50 2662098 NP_887436.1 CDS BB0887 NC_002927.3 944534 945949 D ortholog of Bordetella pertussis (BX470248) BP3139; oxidoreductase 944534..945949 Bordetella bronchiseptica RB50 2659293 NP_887437.1 CDS BB0888 NC_002927.3 945964 946674 D ortholog of Bordetella pertussis (BX470248) BP3138; two-component system response regulator 945964..946674 Bordetella bronchiseptica RB50 2663646 NP_887438.1 CDS BB0889 NC_002927.3 946671 947993 D ortholog of Bordetella pertussis (BX470248) BP3137; two-component system sensor protein 946671..947993 Bordetella bronchiseptica RB50 2663335 NP_887439.1 CDS BB0890 NC_002927.3 948073 950034 D ortholog of Bordetella pertussis (BX470248) BP3136; sulfatase 948073..950034 Bordetella bronchiseptica RB50 2663345 NP_887440.1 CDS fahA NC_002927.3 950146 951459 R ortholog of Bordetella pertussis (BX470248) BP3135; fumarylacetoacetase complement(950146..951459) Bordetella bronchiseptica RB50 2663341 NP_887441.1 CDS hmgA NC_002927.3 951568 952866 R An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase complement(951568..952866) Bordetella bronchiseptica RB50 2663339 NP_887442.1 CDS BB0893 NC_002927.3 953049 953957 D ortholog of Bordetella pertussis (BX470248) BP3133; LysR family transcriptional regulator 953049..953957 Bordetella bronchiseptica RB50 2663328 NP_887443.1 CDS BB0894 NC_002927.3 953967 954176 R ortholog of Bordetella pertussis (BX470248) BP3132; hypothetical protein complement(953967..954176) Bordetella bronchiseptica RB50 2663857 NP_887444.1 CDS BB0895 NC_002927.3 954188 955867 R ortholog of Bordetella pertussis (BX470248) BP3131; FAD-dependent oxidoreductase complement(954188..955867) Bordetella bronchiseptica RB50 2662775 NP_887445.1 CDS BB0896 NC_002927.3 955969 956988 R ortholog of Bordetella pertussis (BX470248) BP3130; cyclase complement(955969..956988) Bordetella bronchiseptica RB50 2662690 NP_887446.2 CDS mutM NC_002927.3 957012 957839 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(957012..957839) Bordetella bronchiseptica RB50 2663664 NP_887447.1 CDS BB0898 NC_002927.3 957838 959724 D ortholog of Bordetella pertussis (BX470248) BP3128; hypothetical protein 957838..959724 Bordetella bronchiseptica RB50 2663132 NP_887448.1 CDS lolB NC_002927.3 959721 960320 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 959721..960320 Bordetella bronchiseptica RB50 2663648 NP_887449.1 CDS ipk NC_002927.3 960369 961268 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 960369..961268 Bordetella bronchiseptica RB50 2663204 NP_887450.1 CDS prsA NC_002927.3 961495 962427 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 961495..962427 Bordetella bronchiseptica RB50 2662705 NP_887451.1 CDS rplY NC_002927.3 962550 963164 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 962550..963164 Bordetella bronchiseptica RB50 2663884 NP_887452.1 CDS pth NC_002927.3 963242 963889 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 963242..963889 Bordetella bronchiseptica RB50 2662730 NP_887453.1 CDS BB0904 NC_002927.3 963886 964668 D ortholog of Bordetella pertussis (BX470248) BP3122; hypothetical protein 963886..964668 Bordetella bronchiseptica RB50 2662991 NP_887454.1 CDS BB0905 NC_002927.3 964741 965832 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 964741..965832 Bordetella bronchiseptica RB50 2663587 NP_887455.1 CDS BB0906 NC_002927.3 966029 967240 D ortholog of Bordetella pertussis (BX470248) BP3120; Similar to Escherichia coli integrase Int SWALL:Q93SE7 (EMBL:AJ278144) (394 aa) fasta scores: E(): 5.8e-38, 32.23% id in 394 aa, and to Shigella flexneri Int SWALL:Q9XCI7 (EMBL:AF141323) (394 aa) fasta scores: E(): 5e-38, 32.48% id in 394 aa; integrase 966029..967240 Bordetella bronchiseptica RB50 2663181 NP_887456.1 CDS BB0907 NC_002927.3 967588 968634 D ortholog of Bordetella pertussis (BX470248) BP3118; Similar to Methanosarcina mazei hypothetical protein Mm2606 SWALL:AAM32302 (EMBL:AE013505) (359 aa) fasta scores: E(): 6.3e-09, 22.75% id in 334 aa, and to Escherichia coli O157:H7 orf, hypothetical protein z5009 or ecs4465 SWALL:Q8XDJ0 (EMBL:AE005585) (431 aa) fasta scores: E(): 1.2e-08, 27.64% id in 322 aa; hypothetical protein 967588..968634 Bordetella bronchiseptica RB50 2663159 NP_887457.1 CDS BB0908 NC_002927.3 968645 971932 D Similar to Pasteurella multocida hypothetical protein Pm0696 SWALL:Q9CMV8 (EMBL:AE006106) (1089 aa) fasta scores: E(): 0, 61.3% id in 1101 aa, and to Listeria innocua hypothetical protein Pli0027 pli0027 SWALL:Q926M9 (EMBL:AL592102) (1001 aa) fasta scores: E(): 4.1e-113, 50.14% id in 1031 aa; helicase 968645..971932 Bordetella bronchiseptica RB50 2663694 NP_887458.1 CDS BB0909 NC_002927.3 971929 972588 D Similar to Pasteurella multocida hypothetical protein Pm0697 SWALL:Q9CMV7 (EMBL:AE006106) (220 aa) fasta scores: E(): 2.7e-27, 38.63% id in 220 aa, and to Chlorobium tepidum TLS hypothetical protein ct0907 SWALL:AAM72142 (EMBL:AE012856) (252 aa) fasta scores: E(): 0.00094, 29.48% id in 234 aa; hypothetical protein 971929..972588 Bordetella bronchiseptica RB50 2663297 NP_887459.1 CDS BB0910 NC_002927.3 972650 973645 D Similar to Rhizobium sp. hypothetical 37.6 kDa aaa-family ATPase Y4kL y4kL SWALL:Y4KL_RHISN (SWALL:P55530) (330 aa) fasta scores: E(): 1.8e-38, 41.41% id in 326 aa, and to Salmonella enterica subsp. enterica serovar Typhimurium ATPase s026 SWALL:Q9ADT7 (EMBL:AF261825) (329 aa) fasta scores: E(): 2.2e-28, 34.46% id in 325 aa; ATPase 972650..973645 Bordetella bronchiseptica RB50 2663795 NP_887460.1 CDS BB0911 NC_002927.3 973652 976006 D Similar to Rhizobium etli hypothetical protein yp094 SWALL:AAM55046 (EMBL:U80928) (823 aa) fasta scores: E(): 1.7e-08, 24.12% id in 858 aa, and to Agrobacterium tumefaciens hypothetical protein atu6083 atu6083 or agr_pti_160 SWALL:Q8U652 (EMBL:AE009427) (836 aa) fasta scores: E(): 3e-08, 25.19% id in 647 aa; serine protease 973652..976006 Bordetella bronchiseptica RB50 2663118 NP_887461.1 CDS BB0912 NC_002927.3 976070 977911 D Similar to Moraxella catarrhalis type III restriction-modification system methyltransferase Mod SWALL:Q93LB8 (EMBL:AY049056) (636 aa) fasta scores: E(): 2e-74, 37.9% id in 612 aa, and to Pasteurella multocida hypothetical protein Pm0698 pm0698 SWALL:Q9CMV6 (EMBL:AE006106) (636 aa) fasta scores: E(): 9.5e-69, 50.31% id in 644 aa; type III restriction-modification system methyltransferase 976070..977911 Bordetella bronchiseptica RB50 2662919 NP_887462.1 CDS BB0913 NC_002927.3 977922 981008 D Similar to Salmonella typhimurium type III restriction-modification system stylti enzyme res res or stm0358 SWALL:T3RE_SALTY (SWALL:P40815) (990 aa) fasta scores: E(): 1.2e-21, 26.35% id in 1017 aa, and to Pasteurella multocida hypothetical protein Pm0699 pm0699 SWALL:Q9CMV5 (EMBL:AE006106) (1043 aa) fasta scores: E(): 2.4e-134, 52.32% id in 1055 aa; type III restriction enzyme 977922..981008 Bordetella bronchiseptica RB50 2663666 NP_887463.1 CDS BB0914 NC_002927.3 981172 981885 R Similar to Salmonella enterica subsp. enterica serovar Typhimurium integrase s020 SWALL:Q9ADU1 (EMBL:AF261825) (321 aa) fasta scores: E(): 1.4e-05, 29.43% id in 214 aa, and to Francisella novicida hypothetical 33.7 kDa protein SWALL:Q9Z5W6 (EMBL:AF121418) (292 aa) fasta scores: E(): 1.2e-31, 41.94% id in 236 aa; integrase complement(981172..981885) Bordetella bronchiseptica RB50 2662952 NP_887464.1 CDS BB0915 NC_002927.3 982505 983689 R Similar to Xanthomonas axonopodis hypothetical protein Xac2208 xac2208 SWALL:AAM37061 (EMBL:AE011858) (407 aa) fasta scores: E(): 8.9e-15, 33.06% id in 366 aa, and to Xylella fastidiosa hypothetical protein Xf1781 xf1781 SWALL:Q9PCJ8 (EMBL:AE004000) (418 aa) fasta scores: E(): 5.3e-14, 32.59% id in 359 aa; hypothetical protein complement(982505..983689) Bordetella bronchiseptica RB50 2663284 NP_887465.1 CDS BB0916 NC_002927.3 984031 988248 R autotransporter complement(984031..988248) Bordetella bronchiseptica RB50 2663105 NP_887466.1 CDS BB0917 NC_002927.3 988824 990395 D regulatory protein 988824..990395 Bordetella bronchiseptica RB50 2663108 NP_887467.1 CDS BB0918 NC_002927.3 990446 991450 R hypothetical protein complement(990446..991450) Bordetella bronchiseptica RB50 2663470 NP_887468.1 CDS BB0919 NC_002927.3 991824 992564 R TetR family transcriptional regulator complement(991824..992564) Bordetella bronchiseptica RB50 2663071 NP_887469.1 CDS BB0920 NC_002927.3 992791 993738 R hypothetical protein complement(992791..993738) Bordetella bronchiseptica RB50 2663300 NP_887470.1 CDS BB0921 NC_002927.3 993954 995129 D hypothetical protein 993954..995129 Bordetella bronchiseptica RB50 2663317 NP_887471.1 CDS BB0922 NC_002927.3 995176 995961 R ortholog of Bordetella pertussis (BX470248) BP3452; GntR family transcriptional regulator complement(995176..995961) Bordetella bronchiseptica RB50 2662936 NP_887472.1 CDS BB0923 NC_002927.3 995958 997619 R catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; thiamine pyrophosphate protein complement(995958..997619) Bordetella bronchiseptica RB50 2662824 NP_887473.1 CDS BB0924 NC_002927.3 997694 998659 R ortholog of Bordetella pertussis (BX470248) BP3454; lipoprotein complement(997694..998659) Bordetella bronchiseptica RB50 2663622 NP_887474.1 CDS BB0925 NC_002927.3 998714 999622 R ortholog of Bordetella pertussis (BX470248) BP3455; taurine dioxygenase complement(998714..999622) Bordetella bronchiseptica RB50 2663233 NP_887475.1 CDS maeB NC_002927.3 999929 1002217 R catalyzes the oxidative decarboxylation of malate to form pyruvate; malic enzyme complement(999929..1002217) Bordetella bronchiseptica RB50 2663218 NP_887476.1 CDS BB0927 NC_002927.3 1002335 1003330 D ortholog of Bordetella pertussis (BX470248) BP3457; LysR family transcriptional regulator 1002335..1003330 Bordetella bronchiseptica RB50 2662819 NP_887477.1 CDS BB0928 NC_002927.3 1003582 1004523 D ortholog of Bordetella pertussis (BX470248) BP3458; peptide ABC transporter permease 1003582..1004523 Bordetella bronchiseptica RB50 2662686 NP_887478.1 CDS BB0929 NC_002927.3 1004523 1005356 D ortholog of Bordetella pertussis (BX470248) BP3459; peptide ABC transporter permease 1004523..1005356 Bordetella bronchiseptica RB50 2662803 NP_887479.1 CDS BB0930 NC_002927.3 1005360 1007210 D ortholog of Bordetella pertussis (BX470248) BP3460; ABC transporter ATP-binding protein 1005360..1007210 Bordetella bronchiseptica RB50 2662826 NP_887480.1 CDS BB0931 NC_002927.3 1007279 1008871 D ortholog of Bordetella pertussis (BX470248) BP3461; peptide ABC transporter substrate-binding protein 1007279..1008871 Bordetella bronchiseptica RB50 2662740 NP_887481.1 CDS BB0932 NC_002927.3 1008890 1010428 D ortholog of Bordetella pertussis (BX470248) BP3462; hypothetical protein 1008890..1010428 Bordetella bronchiseptica RB50 2663688 NP_887482.1 CDS BB0933 NC_002927.3 1010522 1011463 R ortholog of Bordetella pertussis (BX470248) BP3463; LysR family transcriptional regulator complement(1010522..1011463) Bordetella bronchiseptica RB50 2663391 NP_887483.1 CDS BB0934 NC_002927.3 1011533 1012372 D ortholog of Bordetella pertussis (BX470248) BP3464; hypothetical protein 1011533..1012372 Bordetella bronchiseptica RB50 2663420 NP_887484.1 CDS BB0935 NC_002927.3 1012434 1012940 R ortholog of Bordetella pertussis (BX470248) BP3465; hypothetical protein complement(1012434..1012940) Bordetella bronchiseptica RB50 2663230 NP_887485.1 CDS BB0936 NC_002927.3 1012937 1013275 R ortholog of Bordetella pertussis (BX470248) BP3466; ArsR family transcriptional regulator complement(1012937..1013275) Bordetella bronchiseptica RB50 2662885 NP_887486.1 CDS BB0937 NC_002927.3 1013713 1016232 D ortholog of Bordetella pertussis (BX470248) BP3467; hypothetical protein 1013713..1016232 Bordetella bronchiseptica RB50 2662643 NP_887487.1 CDS BB0938 NC_002927.3 1016229 1016615 D ortholog of Bordetella pertussis (BX470248) BP3468; hypothetical protein 1016229..1016615 Bordetella bronchiseptica RB50 2663636 NP_887488.1 CDS BB0939 NC_002927.3 1016623 1017840 R ortholog of Bordetella pertussis (BX470248) BP3469; transport protein complement(1016623..1017840) Bordetella bronchiseptica RB50 2663637 NP_887489.1 CDS fdx NC_002927.3 1017837 1018088 R ortholog of Bordetella pertussis (BX470248) BP3470; ferredoxin complement(1017837..1018088) Bordetella bronchiseptica RB50 2663400 NP_887490.1 CDS coaD NC_002927.3 1018143 1018652 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(1018143..1018652) Bordetella bronchiseptica RB50 2663139 NP_887491.1 CDS BB0942 NC_002927.3 1018673 1019293 R ortholog of Bordetella pertussis (BX470248) BP3472; hypothetical protein complement(1018673..1019293) Bordetella bronchiseptica RB50 2662808 NP_887492.1 CDS ftsY NC_002927.3 1019501 1020568 D ortholog of Bordetella pertussis (BX470248) BP3473; cell division protein 1019501..1020568 Bordetella bronchiseptica RB50 2662713 NP_887493.1 CDS BB0944 NC_002927.3 1020615 1022213 R ortholog of Bordetella pertussis (BX470248) BP3474; hypothetical protein complement(1020615..1022213) Bordetella bronchiseptica RB50 2663313 NP_887494.1 CDS BB0945 NC_002927.3 1022454 1023275 R ortholog of Bordetella pertussis (BX470248) BP3476; binding-protein-dependent transport system permease complement(1022454..1023275) Bordetella bronchiseptica RB50 2663189 NP_887495.1 CDS BB0946 NC_002927.3 1023272 1024162 R ortholog of Bordetella pertussis (BX470248) BP3477; phosphate/phosphonate ABC transporter permease complement(1023272..1024162) Bordetella bronchiseptica RB50 2663475 NP_887496.1 CDS BB0947 NC_002927.3 1024159 1024929 R ortholog of Bordetella pertussis (BX470248) BP3479; transport system ATP-binding protein complement(1024159..1024929) Bordetella bronchiseptica RB50 2662886 NP_887497.1 CDS BB0948 NC_002927.3 1024932 1025939 R ortholog of Bordetella pertussis (BX470248) BP3481; hypothetical protein complement(1024932..1025939) Bordetella bronchiseptica RB50 2662784 NP_887498.1 CDS BB0949 NC_002927.3 1026088 1026915 R ortholog of Bordetella pertussis (BX470248) BP3482; transcriptional regulator complement(1026088..1026915) Bordetella bronchiseptica RB50 2662693 NP_887499.1 CDS BB0950 NC_002927.3 1026921 1027700 R ortholog of Bordetella pertussis (BX470248) BP3483; haloacid dehalogenase-like hydrolase complement(1026921..1027700) Bordetella bronchiseptica RB50 2663406 NP_887500.1 CDS ribB NC_002927.3 1027864 1029039 D bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 1027864..1029039 Bordetella bronchiseptica RB50 2663236 NP_887501.1 CDS ribH NC_002927.3 1029053 1029580 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1029053..1029580 Bordetella bronchiseptica RB50 2662692 NP_887502.1 CDS nusB NC_002927.3 1029588 1030052 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1029588..1030052 Bordetella bronchiseptica RB50 2662948 NP_887503.1 CDS thiL NC_002927.3 1030092 1031108 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 1030092..1031108 Bordetella bronchiseptica RB50 2663251 NP_887504.1 CDS BB0955 NC_002927.3 1031105 1031647 D ortholog of Bordetella pertussis (BX470248) BP3488; phosphatidylglycerophosphatase 1031105..1031647 Bordetella bronchiseptica RB50 2663242 NP_887505.1 CDS BB0956 NC_002927.3 1031644 1032210 D ortholog of Bordetella pertussis (BX470248) BP3489; hypothetical protein 1031644..1032210 Bordetella bronchiseptica RB50 2663215 NP_887506.1 CDS pyrF NC_002927.3 1032377 1033198 R OMP decarboxylase; OMPDCase; OMPdecase; type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1032377..1033198) Bordetella bronchiseptica RB50 2663472 NP_887507.1 CDS ndh NC_002927.3 1033206 1034525 R ortholog of Bordetella pertussis (BX470248) BP3491; NADH dehydrogenase complement(1033206..1034525) Bordetella bronchiseptica RB50 2663303 NP_887508.1 CDS dgkA NC_002927.3 1034576 1034974 R ortholog of Bordetella pertussis (BX470248) BP3492; diacylglycerol kinase complement(1034576..1034974) Bordetella bronchiseptica RB50 2662990 NP_887509.1 CDS brkB NC_002927.3 1035063 1035953 R ortholog of Bordetella pertussis (BX470248) BP3493; serum resistance protein complement(1035063..1035953) Bordetella bronchiseptica RB50 2663244 NP_887510.1 CDS groEL NC_002927.3 1039390 1041033 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(1039390..1041033) Bordetella bronchiseptica RB50 2662796 NP_887511.1 CDS groES NC_002927.3 1041066 1041353 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(1041066..1041353) Bordetella bronchiseptica RB50 2662742 NP_887512.1 CDS BB0964 NC_002927.3 1041745 1042374 R ortholog of Bordetella pertussis (BX470248) BP3497; hypothetical protein complement(1041745..1042374) Bordetella bronchiseptica RB50 2662749 NP_887513.1 CDS BB0965 NC_002927.3 1042371 1043072 R ortholog of Bordetella pertussis (BX470248) BP3498; hypothetical protein complement(1042371..1043072) Bordetella bronchiseptica RB50 2662724 NP_887514.1 CDS BB0966 NC_002927.3 1043121 1043756 R ortholog of Bordetella pertussis (BX470248) BP3499; hypothetical protein complement(1043121..1043756) Bordetella bronchiseptica RB50 2663200 NP_887515.1 CDS BB0967 NC_002927.3 1043800 1045509 R proposed role in polysaccahride synthesis; FAD-binding dehydrogenase complement(1043800..1045509) Bordetella bronchiseptica RB50 2663302 NP_887516.1 CDS BB0968 NC_002927.3 1045571 1046521 R ortholog of Bordetella pertussis (BX470248) BP3501; hypothetical protein complement(1045571..1046521) Bordetella bronchiseptica RB50 2663407 NP_887517.1 CDS BB0969 NC_002927.3 1047127 1048140 R ortholog of Bordetella pertussis (BX470248) BP3503; LysR family transcriptional regulator complement(1047127..1048140) Bordetella bronchiseptica RB50 2662743 NP_887518.1 CDS BB0970 NC_002927.3 1048188 1049933 D proposed role in polysaccahride synthesis; FAD-binding dehydrogenase 1048188..1049933 Bordetella bronchiseptica RB50 2663164 NP_887519.1 CDS BB0971 NC_002927.3 1050044 1051009 D hypothetical protein 1050044..1051009 Bordetella bronchiseptica RB50 2663306 NP_887520.1 CDS BB0972 NC_002927.3 1051046 1051798 R transcriptional regulator complement(1051046..1051798) Bordetella bronchiseptica RB50 2663644 NP_887521.1 CDS BB0973 NC_002927.3 1051913 1052296 R carboxymuconolactone decarboxylase complement(1051913..1052296) Bordetella bronchiseptica RB50 2662878 NP_887522.1 CDS BB0974 NC_002927.3 1052312 1053301 R 6-phosphogluconate dehydrogenase complement(1052312..1053301) Bordetella bronchiseptica RB50 2663176 NP_887523.1 CDS BB0975 NC_002927.3 1053474 1054160 R hydrolase complement(1053474..1054160) Bordetella bronchiseptica RB50 2662933 NP_887524.1 CDS BB0976 NC_002927.3 1054705 1056336 D lactate permease family protein 1054705..1056336 Bordetella bronchiseptica RB50 2662926 NP_887525.1 CDS BB0977 NC_002927.3 1056333 1056545 D hypothetical protein 1056333..1056545 Bordetella bronchiseptica RB50 2663453 NP_887526.1 CDS ggt NC_002927.3 1056589 1058250 D gamma-glutamyltranspeptidase 1056589..1058250 Bordetella bronchiseptica RB50 2663616 NP_887527.1 CDS BB0979 NC_002927.3 1058269 1058730 D universal stress protein 1058269..1058730 Bordetella bronchiseptica RB50 2662710 NP_887528.1 CDS BB0980 NC_002927.3 1058748 1059221 R GNAT family acetyltransferase complement(1058748..1059221) Bordetella bronchiseptica RB50 2663225 NP_887529.1 CDS BB0981 NC_002927.3 1059332 1061179 R acyl-CoA dehydrogenase complement(1059332..1061179) Bordetella bronchiseptica RB50 2663449 NP_887530.1 CDS BB0982 NC_002927.3 1061213 1062439 R hypothetical protein complement(1061213..1062439) Bordetella bronchiseptica RB50 2662944 NP_887531.1 CDS BB0983 NC_002927.3 1062488 1063477 R hypothetical protein complement(1062488..1063477) Bordetella bronchiseptica RB50 2662838 NP_887532.1 CDS BB0984 NC_002927.3 1063618 1064511 D LysR family transcriptional regulator 1063618..1064511 Bordetella bronchiseptica RB50 2662685 NP_887533.1 CDS BB0985 NC_002927.3 1064650 1065339 D hypothetical protein 1064650..1065339 Bordetella bronchiseptica RB50 2662812 NP_887534.1 CDS BB0986 NC_002927.3 1065323 1066306 R hypothetical protein complement(1065323..1066306) Bordetella bronchiseptica RB50 2662949 NP_887535.1 CDS BB0987 NC_002927.3 1066387 1067127 R hypothetical protein complement(1066387..1067127) Bordetella bronchiseptica RB50 2662918 NP_887536.1 CDS BB0988 NC_002927.3 1067143 1068672 R hypothetical protein complement(1067143..1068672) Bordetella bronchiseptica RB50 2662773 NP_887537.1 CDS BB0989 NC_002927.3 1068685 1069683 R hypothetical protein complement(1068685..1069683) Bordetella bronchiseptica RB50 2662776 NP_887538.1 CDS BB0990 NC_002927.3 1069793 1070710 D LysR family transcriptional regulator 1069793..1070710 Bordetella bronchiseptica RB50 2663842 NP_887539.1 CDS BB0991 NC_002927.3 1070707 1071870 R hypothetical protein complement(1070707..1071870) Bordetella bronchiseptica RB50 2663682 NP_887540.1 CDS BB0992 NC_002927.3 1072011 1073453 R pyridine nucleotide-disulfide oxidoreductase complement(1072011..1073453) Bordetella bronchiseptica RB50 2663458 NP_887541.1 CDS BB0993 NC_002927.3 1073450 1073758 R hypothetical protein complement(1073450..1073758) Bordetella bronchiseptica RB50 2663264 NP_887542.1 CDS BB0994 NC_002927.3 1073742 1074896 R FAD dependent oxidoreductase complement(1073742..1074896) Bordetella bronchiseptica RB50 2662725 NP_887543.1 CDS BB0995 NC_002927.3 1074924 1075973 R dipeptidase complement(1074924..1075973) Bordetella bronchiseptica RB50 2662947 NP_887544.1 CDS BB0996 NC_002927.3 1076032 1077150 R ABC transporter ATP-binding protein complement(1076032..1077150) Bordetella bronchiseptica RB50 2662706 NP_887545.1 CDS BB0997 NC_002927.3 1077147 1077920 R spermidine/putrescine ABC transporter permease complement(1077147..1077920) Bordetella bronchiseptica RB50 2663685 NP_887546.1 CDS BB0998 NC_002927.3 1077917 1078783 R spermidine/putrescine ABC transporter substrate-binding protein complement(1077917..1078783) Bordetella bronchiseptica RB50 2662854 NP_887547.1 CDS BB0999 NC_002927.3 1078878 1079939 R spermidine/putrescine ABC transporter substrate-binding protein complement(1078878..1079939) Bordetella bronchiseptica RB50 2662927 NP_887548.1 CDS BB1000 NC_002927.3 1080178 1081098 R LysR family transcriptional regulator complement(1080178..1081098) Bordetella bronchiseptica RB50 2662902 NP_887549.1 CDS BB1001 NC_002927.3 1081317 1082090 R enoyl-CoA hydratase complement(1081317..1082090) Bordetella bronchiseptica RB50 2662704 NP_887550.1 CDS BB1002 NC_002927.3 1082135 1083754 R long-chain-fatty-acid-CoA ligase complement(1082135..1083754) Bordetella bronchiseptica RB50 2662659 NP_887551.1 CDS BB1003 NC_002927.3 1083756 1084724 R Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 4.3e-30, 36.72% id in 324 aa, and to Rhizobium meliloti hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 7.4e-30, 34.4% id in 311 aa; hypothetical protein complement(1083756..1084724) Bordetella bronchiseptica RB50 2663162 NP_887552.1 CDS BB1004 NC_002927.3 1084893 1085804 D Similar to Salmonella typhimurium OsmT protein SWALL:Q93IN5 (EMBL:AJ313506) (308 aa) fasta scores: E(): 1.1e-19, 29.86% id in 298 aa, and to Salmonella typhi LysR-family transcriptioanl regulator sty3944 SWALL:Q8Z2N3 (EMBL:AL627280) (302 aa) fasta scores: E(): 4e-20, 28.96% id in 290 aa; LysR family transcriptional regulator 1084893..1085804 Bordetella bronchiseptica RB50 2662924 NP_887553.1 CDS BB1005 NC_002927.3 1085821 1087470 R Similar to Pseudomonas aeruginosa probable ATP-binding protein of ABC transporter pa2061 SWALL:Q9I254 (EMBL:AE004632) (536 aa) fasta scores: E(): 4.5e-71, 46.08% id in 523 aa, and to Agrobacterium tumefaciens ABC transporter nucleotide binding/ATPase atu5068 or agr_pat_93 SWALL:Q8UKN2 (EMBL:AE008931) (539 aa) fasta scores: E(): 9.8e-69, 41.87% id in 554 aa; ABC transporter ATP-binding protein complement(1085821..1087470) Bordetella bronchiseptica RB50 2662703 NP_887554.1 CDS BB1006 NC_002927.3 1087479 1088399 R Similar to Bacillus halodurans oligopeptide ABC transporter AppB or bh0348 SWALL:Q9KFX2 (EMBL:AP001508) (305 aa) fasta scores: E(): 3.6e-28, 32.51% id in 286 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc1381 or rs04750 SWALL:Q8XZL4 (EMBL:AL646064) (307 aa) fasta scores: E(): 1.4e-26, 34.69% id in 294 aa; peptide ABC transporter permease complement(1087479..1088399) Bordetella bronchiseptica RB50 2663229 NP_887555.1 CDS BB1007 NC_002927.3 1088396 1089229 R Similar to Agrobacterium tumefaciens AgaC SWALL:O50261 (EMBL:AF242881) (275 aa) fasta scores: E(): 7.8e-30, 38.49% id in 265 aa, and to Bacillus halodurans oligopeptide ABC transporter bh0030 SWALL:Q9KGM8 (EMBL:AP001507) (301 aa) fasta scores: E(): 2.7e-30, 35.15% id in 256 aa; peptide ABC transporter permease complement(1088396..1089229) Bordetella bronchiseptica RB50 2663377 NP_887556.1 CDS BB1008 NC_002927.3 1089229 1090779 R Similar to Agrobacterium tumefaciens ABC transporter substrate-binding protein atu5343 or agr_pat_490 SWALL:Q8UJY1 (EMBL:AE008956) (517 aa) fasta scores: E(): 1.9e-22, 31.03% id in 406 aa, and to Rhizobium loti dipeptide-binding protein of ABC transporter mlr1186 SWALL:Q98L42 (EMBL:AP002996) (497 aa) fasta scores: E(): 1.8e-21, 28.38% id in 465 aa; peptide ABC transporter substrate-binding protein complement(1089229..1090779) Bordetella bronchiseptica RB50 2663125 NP_887557.1 CDS BB1009 NC_002927.3 1090776 1092083 R Weakly similar to Clostridium acetobutylicum ap superfamily cac0477 SWALL:Q97LS7 (EMBL:AE007562) (434 aa) fasta scores: E(): 0.00024, 20.63% id in 441 aa, and to Clostridium perfringens hypothetical protein Cpe1375 cpe1375 SWALL:Q8XKL9 (EMBL:AP003190) (431 aa) fasta scores: E(): 0.13, 20.5% id in 434 aa; hypothetical protein complement(1090776..1092083) Bordetella bronchiseptica RB50 2663145 NP_887558.1 CDS phnA NC_002927.3 1092236 1093495 R Similar to Pseudomonas fluorescens phosphonoacetate hydrolase PhnA SWALL:Q51782 (EMBL:L49465) (407 aa) fasta scores: E(): 1.7e-79, 52.06% id in 411 aa, and to Rhizobium meliloti phosphonoacetate hydrolase PhnA or rb0978 or smb21538 SWALL:Q92UV8 (EMBL:AL603645) (424 aa) fasta scores: E(): 1.7e-70, 46.42% id in 420 aa; phosphonoacetate hydrolase complement(1092236..1093495) Bordetella bronchiseptica RB50 2662717 NP_887559.1 CDS phnR NC_002927.3 1093635 1094528 D Similar to Pseudomonas fluorescens positive transcriptional regulator PhnR SWALL:O69758 (EMBL:L49465) (299 aa) fasta scores: E(): 1.3e-57, 53.33% id in 285 aa, and to Agrobacterium tumefaciens transcriptional regulator, LysR-family atu4419 or agr_l_895 SWALL:Q8U7N0 (EMBL:AE009370) (306 aa) fasta scores: E(): 4.4e-28, 32.87% id in 292 aa; LysR family transcriptional regulator 1093635..1094528 Bordetella bronchiseptica RB50 2663384 NP_887560.1 CDS BB1012 NC_002927.3 1094548 1095480 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(1094548..1095480) Bordetella bronchiseptica RB50 2663695 NP_887561.1 CDS aphA NC_002927.3 1095517 1096563 R Similar to Mycoplana ramosa acetylpolyamine aminohydrolase apha or apH SWALL:APHA_MYCRA (SWALL:Q48935) (341 aa) fasta scores: E(): 3.4e-49, 42.64% id in 340 aa, and to Rhizobium loti acetylpolyamine aminohydrolase mll0103 SWALL:Q98NK3 (EMBL:AP002994) (342 aa) fasta scores: E(): 7.8e-74, 54.3% id in 337 aa; acetylpolyamine aminohydrolase complement(1095517..1096563) Bordetella bronchiseptica RB50 2662683 NP_887562.1 CDS leuB NC_002927.3 1096604 1097716 R Similar to Pseudomonas aeruginosa 3-isopropylmalate dehydrogenase LeuB or pa3118 SWALL:LEU3_PSEAE (SWALL:Q51375) (360 aa) fasta scores: E(): 5.9e-61, 48.09% id in 368 aa, and to Agrobacterium tumefaciens 3-isopropylmalate dehydrogenase LeuB or atu2791 or agr_c_5067 SWALL:LEU3_AGRT5 (SWALL:P24404) (370 aa) fasta scores: E(): 6e-62, 46.72% id in 366 aa; 3-isopropylmalate dehydrogenase complement(1096604..1097716) Bordetella bronchiseptica RB50 2663175 NP_887563.1 CDS leuD NC_002927.3 1097720 1098349 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(1097720..1098349) Bordetella bronchiseptica RB50 2662750 NP_887564.1 CDS leuC NC_002927.3 1098390 1099784 R dehydratase, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(1098390..1099784) Bordetella bronchiseptica RB50 2662989 NP_887565.1 CDS BB1017 NC_002927.3 1099789 1100853 R Similar to Ralstonia solanacearum probable signal peptide protein rsc1198 or rs05730 SWALL:Q8Y046 (EMBL:AL646063) (349 aa) fasta scores: E(): 3.9e-52, 48.67% id in 339 aa, and to Brucella melitensis taurine-binding periplasmic protein precursor bmeii0963 SWALL:Q8YBD7 (EMBL:AE009729) (320 aa) fasta scores: E(): 6.3e-45, 42.35% id in 314 aa; taurine ABC transporter substrate-binding protein complement(1099789..1100853) Bordetella bronchiseptica RB50 2663423 NP_887566.1 CDS BB1018 NC_002927.3 1100946 1101698 R Similar to Ralstonia solanacearum probable transmembrane permease ABC transporter protein rsc1200 or rs02669 SWALL:Q8Y044 (EMBL:AL646063) (263 aa) fasta scores: E(): 1.1e-60, 68.18% id in 242 aa, and to Brucella melitensis taurine transport permease tauc bmeii0962 SWALL:Q8YBD8 (EMBL:AE009729) (263 aa) fasta scores: E(): 4.1e-53, 57.76% id in 251 aa; transmembrane permease ABC transporter protein complement(1100946..1101698) Bordetella bronchiseptica RB50 2663457 NP_887567.1 CDS BB1019 NC_002927.3 1101745 1102578 R Similar to Ralstonia solanacearum probable ATP-binding ABC transporter protein rsc1199 or rs02665 SWALL:Q8Y045 (EMBL:AL646063) (270 aa) fasta scores: E(): 1.7e-59, 67.17% id in 262 aa, and to Brucella melitensis taurine transport ATP-binding protein TauB bmeii0961 SWALL:Q8YBD9 (EMBL:AE009729) (281 aa) fasta scores: E(): 1.9e-46, 53.48% id in 258 aa; ATP-binding ABC transporter protein complement(1101745..1102578) Bordetella bronchiseptica RB50 2662695 NP_887568.1 CDS BB1020 NC_002927.3 1102731 1103642 R Similar to Pseudomonas aeruginosa probable transcriptional regulator pa0877 SWALL:Q9I568 (EMBL:AE004522) (298 aa) fasta scores: E(): 2e-34, 34.01% id in 294 aa, and to Brucella melitensis transcriptional regulatory protein, LysR-family bmeii1077 SWALL:Q8YB24 (EMBL:AE009740) (294 aa) fasta scores: E(): 5.6e-34, 34.12% id in 296 aa; LysR family transcriptional regulator complement(1102731..1103642) Bordetella bronchiseptica RB50 2663385 NP_887569.1 CDS BB1021 NC_002927.3 1103786 1104172 D Similar to Pseudomonas putida hypothetical 15.9 kDa protein SWALL:Q8VMK3 (EMBL:AJ344068) (138 aa) fasta scores: E(): 1.2e-23, 50.42% id in 117 aa, and to Rhizobium meliloti hypothetical protein rb0250 rb0250 or smb20260 SWALL:Q92WS9 (EMBL:AL603642) (130 aa) fasta scores: E(): 4.5e-18, 48.43% id in 128 aa; hypothetical protein 1103786..1104172 Bordetella bronchiseptica RB50 2663450 NP_887570.1 CDS BB1022 NC_002927.3 1104180 1104710 R Similar to Bacillus subtilis probable acetyltransferase YdaF SWALL:P96579 (EMBL:AB001488) (183 aa) fasta scores: E(): 4e-08, 27.84% id in 176 aa, and to Staphylococcus aureus Mw0318 protein SWALL:BAB94183 (EMBL:AP004823) (181 aa) fasta scores: E(): 1.6e-12, 27.48% id in 171 aa; acetyltransferase complement(1104180..1104710) Bordetella bronchiseptica RB50 2663329 NP_887571.1 CDS BB1023 NC_002927.3 1104758 1104895 R no significant database matches; hypothetical protein complement(1104758..1104895) Bordetella bronchiseptica RB50 2663397 NP_887572.1 CDS BB1024 NC_002927.3 1104915 1105838 R Similar to Escherichia coli cyn operon transcriptional activator CynR or b0338 SWALL:CYNR_ECOLI (SWALL:P27111) (311 aa) fasta scores: E(): 7.6e-17, 30.16% id in 305 aa, and to Xylella fastidiosa oxidative stress transcriptional regulator xf1532 SWALL:Q9PD47 (EMBL:AE003983) (325 aa) fasta scores: E(): 3.9e-17, 29.54% id in 308 aa; LysR family transcriptional regulator complement(1104915..1105838) Bordetella bronchiseptica RB50 2663396 NP_887573.1 CDS BB1025 NC_002927.3 1105937 1107268 D Similar to Homo sapiens arylsulfatase a precursor ArsA SWALL:ARSA_HUMAN (SWALL:P15289) (507 aa) fasta scores: E(): 1.9e-42, 35.63% id in 449 aa, and to Rhizobium meliloti arylsulfatase AslA1 or rb1214 or smb20915 SWALL:Q92UC0 (EMBL:AL603646) (537 aa) fasta scores: E(): 3.8e-36, 33.1% id in 438 aa; sulfatase 1105937..1107268 Bordetella bronchiseptica RB50 2663603 NP_887574.1 CDS BB1026 NC_002927.3 1107309 1108271 D Similar to Rhizobium meliloti hypothetical protein Ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 2e-28, 33.12% id in 323 aa, and to Pseudomonas putida, and Pseudomonas sp. hypothetical 34.5 kDa protein in clcb-clcd intergenic region precursor SWALL:YCLC_PSEPU (SWALL:Q47100) (329 aa) fasta scores: E(): 5.1e-28, 35.39% id in 308 aa; hypothetical protein 1107309..1108271 Bordetella bronchiseptica RB50 2662696 NP_887575.1 CDS BB1027 NC_002927.3 1108387 1109343 R Similar to Azorhizobium caulinodans Nac protein SWALL:O66393 (EMBL:AJ006238) (311 aa) fasta scores: E(): 3.3e-27, 33.97% id in 312 aa, and to Agrobacterium tumefaciens transcriptional regulator, LysR family Nac or atu4279 or agr_l_1169 SWALL:Q8U820 (EMBL:AE009356) (301 aa) fasta scores: E(): 1.7e-19, 27.74% id in 310 aa; LysR family transcriptional regulator complement(1108387..1109343) Bordetella bronchiseptica RB50 2663667 NP_887576.1 CDS BB1028 NC_002927.3 1109472 1110446 D Similar to Rhizobium meliloti hypothetical protein Ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 3.4e-43, 40.86% id in 323 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 9.9e-38, 37.8% id in 328 aa; hypothetical protein 1109472..1110446 Bordetella bronchiseptica RB50 2663602 NP_887577.1 CDS BB1029 NC_002927.3 1110443 1111219 D Similar to Clostridium thermosaccharolyticum crotonase crT SWALL:P97087 (EMBL:Z92974) (259 aa) fasta scores: E(): 4.8e-22, 31.87% id in 251 aa, and to Thermoanaerobacter tengcongensis enoyl-coa hydratase/carnithine racemase caid or tte0544 SWALL:Q8RC92 (EMBL:AE013024) (260 aa) fasta scores: E(): 1.5e-21, 31.87% id in 251 aa; enoyl-CoA hydratase 1110443..1111219 Bordetella bronchiseptica RB50 2662694 NP_887578.1 CDS BB1030 NC_002927.3 1111258 1112229 R Similar to Rhizobium meliloti hypothetical protein ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 9.8e-48, 45.06% id in 324 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.3e-40, 40.74% id in 324 aa; hypothetical protein complement(1111258..1112229) Bordetella bronchiseptica RB50 2663153 NP_887579.1 CDS BB1031 NC_002927.3 1112547 1113467 D Similar to Pseudomonas aeruginosa 3-hydroxyisobutyrate dehydrogenase MmsB or pa3569 SWALL:MMSB_PSEAE (SWALL:P28811) (298 aa) fasta scores: E(): 6.2e-21, 35.5% id in 276 aa, and to Rhizobium meliloti hypothetical protein rb1375 rb1375 or smb20668 SWALL:Q92TW9 (EMBL:AL603646) (301 aa) fasta scores: E(): 1.9e-34, 44.48% id in 290 aa; 3-hydroxyisobutyrate dehydrogenase 1112547..1113467 Bordetella bronchiseptica RB50 2662938 NP_887580.1 CDS BB1032 NC_002927.3 1113464 1114324 D Similar to the N-terminal region of Rhodobacter sphaeroides molybdenum cofactor biosynthesis protein a moeA SWALL:Q9ZFA5 (EMBL:AF108766) (394 aa) fasta scores: E(): 0.47, 26.59% id in 282 aa; hypothetical protein 1113464..1114324 Bordetella bronchiseptica RB50 2663609 NP_887581.1 CDS BB1033 NC_002927.3 1114349 1115044 D Similar to Escherichia coli 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH or HpaI SWALL:HPAI_ECOLI (SWALL:Q47098) (262 aa) fasta scores: E(): 8.6e-07, 26.93% id in 245 aa, and to Yersinia pestis 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpaI or ypo1767 SWALL:Q8ZFE7 (EMBL:AJ414150) (268 aa) fasta scores: E(): 3.7e-08, 28.76% id in 219 aa; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 1114349..1115044 Bordetella bronchiseptica RB50 2661840 NP_887582.1 CDS BB1034 NC_002927.3 1115041 1116402 D Similar to Rhizobium meliloti hypothetical protein rb0380 or smb20394 SWALL:Q92WF9 (EMBL:AL603643) (442 aa) fasta scores: E(): 1e-47, 41.13% id in 440 aa, and to Rhizobium loti hypothetical protein Mll7005 SWALL:Q987L2 (EMBL:AP003010) (438 aa) fasta scores: E(): 2.1e-44, 39.41% id in 444 aa; hypothetical protein 1115041..1116402 Bordetella bronchiseptica RB50 2662754 NP_887583.1 CDS BB1035 NC_002927.3 1116443 1117714 R Similar to Chlorobium limicola f.sp. thiosulfatophilum rubisco-like protein RbcL SWALL:Q9AMC5 (EMBL:AF326322) (434 aa) fasta scores: E(): 4.1e-40, 33.33% id in 408 aa, and to Rhizobium meliloti ribulose bisphosphate carboxylaseoxygenase, large subunit protein rbcl or rb0379 or smb20393 SWALL:Q92WG0 (EMBL:AL603643) (418 aa) fasta scores: E(): 1.7e-61, 45.52% id in 413 aa; ribulose bisphosphate carboxylaseoxygenase,large subunit complement(1116443..1117714) Bordetella bronchiseptica RB50 2663854 NP_887584.1 CDS BB1036 NC_002927.3 1117890 1118771 D Similar to Pseudomonas syringae trpba operon transcriptional activator TrpI SWALL:TRPI_PSESY (SWALL:P34818) (298 aa) fasta scores: E(): 3.3e-37, 43.52% id in 301 aa, and to Pseudomonas aeruginosa trpba operon transcriptional activator TrpI or pa0037 SWALL:TRPI_PSEAE (SWALL:P11720) (295 aa) fasta scores: E(): 3.8e-37, 42.28% id in 298 aa; LysR family transcriptional regulator 1117890..1118771 Bordetella bronchiseptica RB50 2663389 NP_887585.1 CDS BB1037 NC_002927.3 1118782 1119681 R Similar to Pseudomonas aeruginosa probable transcriptional regulator pa3594 SWALL:Q9HY32 (EMBL:AE004780) (295 aa) fasta scores: E(): 2.4e-41, 44.56% id in 285 aa, and to Deinococcus radiodurans transcriptional regulator, LysR family dr0615 SWALL:Q9RWQ1 (EMBL:AE001919) (317 aa) fasta scores: E(): 2.2e-32, 38.48% id in 304 aa; LysR family transcriptional regulator complement(1118782..1119681) Bordetella bronchiseptica RB50 2663482 NP_887586.1 CDS BB1038 NC_002927.3 1119810 1120586 D Similar to Escherichia coli probable enoyl-CoA hydratase PaaF or b1393 SWALL:PAAF_ECOLI (SWALL:P76082) (255 aa) fasta scores: E(): 5e-20, 33.06% id in 245 aa, and to Bacillus halodurans enoyl CoA hydratase YngF or PhaA or bh0201 SWALL:Q9Z9V2 (EMBL:AB011837) (257 aa) fasta scores: E(): 4e-23, 31.78% id in 258 aa; enoyl-CoA hydratase 1119810..1120586 Bordetella bronchiseptica RB50 2663452 NP_887587.1 CDS BB1039 NC_002927.3 1120632 1121597 D Similar to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1e-36, 39.29% id in 313 aa, and to Comamonas testosteroni OrfJ protein OrfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.1e-31, 36.76% id in 321 aa; hypothetical protein 1120632..1121597 Bordetella bronchiseptica RB50 2662748 NP_887588.1 CDS BB1040 NC_002927.3 1121629 1122837 D Similar to Acinetobacter sp. NCIMB9871 L-carnitine dehydrogenase Orf17 SWALL:Q93RL7 (EMBL:AB026669) (405 aa) fasta scores: E(): 2.9e-82, 53.13% id in 399 aa, and to Ralstonia solanacearum transmembrane protein rsc0796 or rs05041 SWALL:Q8Y194 (EMBL:AL646061) (420 aa) fasta scores: E(): 2.2e-84, 55.77% id in 398 aa; hypothetical protein 1121629..1122837 Bordetella bronchiseptica RB50 2663070 NP_887589.1 CDS BB1041 NC_002927.3 1122842 1123732 R Similar to Rhizobium meliloti LysR type regulator ra0164 or sma0303 SWALL:Q930N1 (EMBL:AE007210) (292 aa) fasta scores: E(): 3.4e-18, 31.35% id in 287 aa, and to Xanthomonas campestris transcriptional regulator TrpI or xcc2544 SWALL:AAM41816 (EMBL:AE012366) (298 aa) fasta scores: E(): 5e-17, 32% id in 300 aa; LysR family transcriptional regulator complement(1122842..1123732) Bordetella bronchiseptica RB50 2663487 NP_887590.1 CDS BB1042 NC_002927.3 1123857 1124840 D Similar to Treponema hyodysenteriae periplasmic-iron-binding protein BitC SWALL:O54369 (EMBL:U75349) (339 aa) fasta scores: E(): 7.1e-28, 30.48% id in 328 aa, and to Agrobacterium tumefaciens ABC transporter substrate-binding protein atu4577 or agr_l_591 SWALL:Q8U777 (EMBL:AE009386) (387 aa) fasta scores: E(): 2.4e-26, 32.45% id in 302 aa; iron ABC transporter substrate-binding protein 1123857..1124840 Bordetella bronchiseptica RB50 2663073 NP_887591.1 CDS BB1043 NC_002927.3 1124868 1125932 D Similar to Agrobacterium tumefaciens ABC transporter nucleotide binding/ATPase AfuC or atu4786 or agr_l_193 SWALL:Q8U6M1 (EMBL:AE009407) (353 aa) fasta scores: E(): 1.6e-45, 50.92% id in 324 aa, and to Rhizobium meliloti iron ABC transporter ATP-binding protein rb0349 or smb20363 SWALL:Q92WJ0 (EMBL:AL603643) (353 aa) fasta scores: E(): 2.9e-43, 49.68% id in 322 aa; iron ABC transporter ATP-binding protein 1124868..1125932 Bordetella bronchiseptica RB50 2663580 NP_887592.1 CDS BB1044 NC_002927.3 1125929 1127587 D Similar to Agrobacterium tumefaciens ABC transporter membrane spanning protein atu4579 or agr_l_586 SWALL:Q8U775 (EMBL:AE009386) (561 aa) fasta scores: E(): 3.9e-57, 32.1% id in 542 aa, and to Fusobacterium nucleatum iron fn0377 SWALL:Q8RGC7 (EMBL:AE010549) (550 aa) fasta scores: E(): 1.3e-49, 27.58% id in 551 aa; iron ABC transporter permease 1125929..1127587 Bordetella bronchiseptica RB50 2663741 NP_887593.1 CDS aatB NC_002927.3 1127584 1128810 D Similar to Rhizobium meliloti aspartate aminotransferase b AatB SWALL:AAB2_RHIME (SWALL:Q06191) (410 aa) fasta scores: E(): 5.4e-83, 54.14% id in 410 aa, and to Agrobacterium tumefaciens aspartate aminotransferase a AatA or atu2196 or agr_c_3991 SWALL:Q8UDD1 (EMBL:AE009170) (400 aa) fasta scores: E(): 1.2e-82, 55.44% id in 395 aa; aspartate aminotransferase 1127584..1128810 Bordetella bronchiseptica RB50 2663785 NP_887594.1 CDS pepM NC_002927.3 1128853 1129725 D Similar to Tetrahymena pyriformis phosphoenolpyruvate phosphomutase precursor PepM SWALL:PEPM_TETPY (SWALL:P33182) (300 aa) fasta scores: E(): 3e-38, 41.81% id in 287 aa, and to Mytilus edulis phosphoenolpyruvate phosphomutase SWALL:PEPM_MYTED (SWALL:P56839) (295 aa) fasta scores: E(): 4.8e-37, 42.7% id in 288 aa; phosphoenolpyruvate phosphomutase 1128853..1129725 Bordetella bronchiseptica RB50 2663653 NP_887595.1 CDS BB1047 NC_002927.3 1129741 1130712 R Similar to Rhizobium meliloti hypothetical protein ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 4.8e-38, 39.29% id in 313 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 4e-30, 32.4% id in 324 aa; hypothetical protein complement(1129741..1130712) Bordetella bronchiseptica RB50 2663041 NP_887596.1 CDS BB1048 NC_002927.3 1130759 1131679 R Similar to Zymomonas mobilis gluconolactonase precursor Gnl SWALL:GNL_ZYMMO (SWALL:Q01578) (320 aa) fasta scores: E(): 0.0024, 29.85% id in 211 aa, and to Caulobacter crescentus gluconolactonase, cc2128 SWALL:Q9A6G6 (EMBL:AE005885) (303 aa) fasta scores: E(): 2.4e-47, 47.36% id in 304 aa; gluconolactonase complement(1130759..1131679) Bordetella bronchiseptica RB50 2662770 NP_887597.1 CDS BB1049 NC_002927.3 1131720 1132565 R Similar to Erwinia chrysanthemi AcsB SWALL:Q93AU1 (EMBL:AF416739) (258 aa) fasta scores: E(): 5.5e-19, 37.26% id in 212 aa, and to Ralstonia solanacearum probable aldolase rsp0423 or rs00880 SWALL:Q8XSP4 (EMBL:AL646078) (267 aa) fasta scores: E(): 2.8e-19, 39.13% id in 207 aa; aldolase complement(1131720..1132565) Bordetella bronchiseptica RB50 2662774 NP_887598.1 CDS BB1050 NC_002927.3 1132562 1133563 R Similar to Agrobacterium tumefaciens phosphoglycerate dehydrogenase SerA or atu5399 or agr_pat_578 SWALL:Q8UJS6 (EMBL:AE008961) (317 aa) fasta scores: E(): 2.2e-32, 41.33% id in 254 aa, and to Aeropyrum pernix 326aa long hypothetical formate dehydrogenase ape2507 SWALL:Q9Y8X7 (EMBL:AP000064) (326 aa) fasta scores: E(): 8e-30, 35.62% id in 320 aa; dehydrogenase complement(1132562..1133563) Bordetella bronchiseptica RB50 2662778 NP_887599.1 CDS BB1053 NC_002927.3 1135229 1136098 R Similar to Escherichia coli alpha-ketoglutarate-dependent taurine dioxygenase TauD or SsiD or b0368 SWALL:TAUD_ECOLI (SWALL:P37610) (282 aa) fasta scores: E(): 5.9e-21, 32.5% id in 283 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2310 pa2310 SWALL:Q9I1G5 (EMBL:AE004657) (295 aa) fasta scores: E(): 3.5e-30, 38.72% id in 297 aa; dioxygenase complement(1135229..1136098) Bordetella bronchiseptica RB50 2662842 NP_887600.1 CDS BB1054 NC_002927.3 1136220 1137188 D Similar to Escherichia coli transcriptional activator protein LysR or b2839 SWALL:LYSR_ECOLI (SWALL:P03030) (311 aa) fasta scores: E(): 2.3e-21, 33.21% id in 289 aa, and to Rhizobium loti transcriptional regulator mlr7023 SWALL:Q987J8 (EMBL:AP003010) (301 aa) fasta scores: E(): 4.8e-22, 32.74% id in 281 aa; LysR family transcriptional regulator 1136220..1137188 Bordetella bronchiseptica RB50 2662804 NP_887601.1 CDS metY NC_002927.3 1137334 1138629 D Similar to Leptospira meyeri O-acetylhomoserine sulfhydrylase MetY SWALL:P94890 (EMBL:Y10744) (442 aa) fasta scores: E(): 4.1e-86, 55.58% id in 439 aa, and to Xanthomonas campestris homocysteine synthase pa5025 MetB or xcc3068 SWALL:AAM42339 (EMBL:AE012421) (428 aa) fasta scores: E(): 7.5e-129, 80.33% id in 422 aa; O-acetylhomoserine sulfhydrylase 1137334..1138629 Bordetella bronchiseptica RB50 2663604 NP_887602.1 CDS BB1056 NC_002927.3 1138677 1139201 R Similar to Legionella pneumophila Mip SWALL:Q53427 (EMBL:S71704) (184 aa) fasta scores: E(): 2.6e-06, 30.33% id in 178 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0269 SWALL:Q9I6M1 (EMBL:AE004465) (145 aa) fasta scores: E(): 1.8e-07, 33.82% id in 136 aa; hypothetical protein complement(1138677..1139201) Bordetella bronchiseptica RB50 2663678 NP_887603.1 CDS BB1057 NC_002927.3 1139302 1140096 R Similar to Rhizobium meliloti hypothetical protein rb1005 or smb21565 SWALL:Q92UT2 (EMBL:AL603645) (248 aa) fasta scores: E(): 2.5e-83, 80.32% id in 244 aa, and to Rhizobium loti hypothetical protein Mlr1911 SWALL:Q98JJ9 (EMBL:AP002998) (249 aa) fasta scores: E(): 3.1e-78, 74.69% id in 245 aa; hypothetical protein complement(1139302..1140096) Bordetella bronchiseptica RB50 2663610 NP_887604.1 CDS BB1058 NC_002927.3 1140221 1140880 R Similar to Rhizobium loti transcriptional regulator mll7060 SWALL:Q987G6 (EMBL:AP003010) (230 aa) fasta scores: E(): 1.7e-20, 37.11% id in 194 aa, and to Acinetobacter calcoaceticus transcriptional repressor MdcY SWALL:Q9F0Q8 (EMBL:AF209728) (224 aa) fasta scores: E(): 7.2e-18, 32.82% id in 195 aa; GntR family transcriptional regulator complement(1140221..1140880) Bordetella bronchiseptica RB50 2663314 NP_887605.1 CDS BB1059 NC_002927.3 1141076 1142263 D Similar to Agrobacterium tumefaciens L-carnitine dehydratase CaiB or atu2127 or agr_c_3858 SWALL:Q8UDJ8 (EMBL:AE009163) (419 aa) fasta scores: E(): 1.3e-50, 40.31% id in 382 aa, and to Thermoplasma volcanium L-carnitine dehydratase tv1186 or tvg1215416 SWALL:Q979H5 (EMBL:AP000995) (399 aa) fasta scores: E(): 4.5e-48, 34.27% id in 388 aa; hypothetical protein 1141076..1142263 Bordetella bronchiseptica RB50 2663471 NP_887606.1 CDS BB1060 NC_002927.3 1142343 1143347 D Similar to Pseudomonas stutzeri probable c4 dicarboxylate binding protein DctP SWALL:Q93JT7 (EMBL:AJ313422) (331 aa) fasta scores: E(): 3.9e-26, 32.68% id in 309 aa, and to Rhodobacter capsulatus c4-dicarboxylate-binding periplasmic protein precursor DctP SWALL:DCTP_RHOCA (SWALL:P37735) (333 aa) fasta scores: E(): 6.8e-26, 31.83% id in 333 aa; C4-dicarboxylate ABC transporter substrate-binding protein 1142343..1143347 Bordetella bronchiseptica RB50 2662827 NP_887607.1 CDS BB1061 NC_002927.3 1143370 1143897 D Similar to Wolinella succinogenes small integral C4-dicarboxylate membrane transport protein, dctQ SWALL:Q9ZEJ3 (EMBL:AJ132740) (170 aa) fasta scores: E(): 7.2e-09, 27.27% id in 165 aa, and to Bacillus halodurans C4-dicarboxylate transport system bh2672 SWALL:Q9K9H5 (EMBL:AP001516) (183 aa) fasta scores: E(): 2.2e-08, 29.57% id in 142 aa; integral membrane transport protein 1143370..1143897 Bordetella bronchiseptica RB50 2663886 NP_887608.1 CDS BB1062 NC_002927.3 1143919 1145175 D Similar to Pasteurella multocida hypothetical protein Pm0273 SWALL:Q9CNZ7 (EMBL:AE006062) (427 aa) fasta scores: E(): 2.8e-54, 40.09% id in 414 aa, and to Pseudomonas stutzeri probable c4-dicarboxylate transporter DctM SWALL:Q93JT5 (EMBL:AJ313422) (426 aa) fasta scores: E(): 2.1e-51, 40.53% id in 412 aa; C4-dicarboxylate ABC transporter permease 1143919..1145175 Bordetella bronchiseptica RB50 2663368 NP_887609.1 CDS BB1063 NC_002927.3 1145178 1145978 D Similar to Streptomyces coelicolor hypothetical protein sco2750 or scc57a.21C SWALL:Q9RDH7 (EMBL:AL136519) (287 aa) fasta scores: E(): 1.8e-10, 28.67% id in 265 aa, and to Agrobacterium tumefaciens hypothetical protein atu3118 or agr_l_3383 SWALL:Q8UB98 (EMBL:AE009242) (273 aa) fasta scores: E(): 1e-08, 31.42% id in 245 aa; hypothetical protein 1145178..1145978 Bordetella bronchiseptica RB50 2663369 NP_887610.1 CDS BB1064 NC_002927.3 1145984 1146877 D Similar to Ralstonia metallidurans esterase estA SWALL:Q9RBF3 (EMBL:AJ251831) (275 aa) fasta scores: E(): 4.7e-14, 29.03% id in 279 aa, and to Pseudomonas sp. 3-oxoadipate enol-lactone hydrolase catD SWALL:Q8VPF0 (EMBL:AY044272) (262 aa) fasta scores: E(): 4.1e-13, 31.52% id in 276 aa; hydrolase 1145984..1146877 Bordetella bronchiseptica RB50 2663376 NP_887611.1 CDS BB1065 NC_002927.3 1146874 1147881 D Similar to Micromonospora echinospora CalS9 SWALL:AAM70333 (EMBL:AF497482) (329 aa) fasta scores: E(): 9.8e-13, 40.65% id in 182 aa, and to Streptomyces griseus TDP-glucose-4,6-dehydratase homolog GrsE SWALL:Q9X5W0 (EMBL:AF128273) (324 aa) fasta scores: E(): 1.3e-12, 28.09% id in 331 aa; NAD dependent epimerase/dehydratase 1146874..1147881 Bordetella bronchiseptica RB50 2662711 NP_887612.1 CDS BB1066 NC_002927.3 1147878 1148783 D Similar to Rhizobium loti hypothetical protein Mll1137 SWALL:Q98L83 (EMBL:AP002996) (291 aa) fasta scores: E(): 4.5e-36, 41.55% id in 296 aa, and to Rhizobium meliloti hypothetical protein transmembrane rb0043 or smb20040 SWALL:Q92XB9 (EMBL:AL603642) (286 aa) fasta scores: E(): 5.1e-36, 42.1% id in 285 aa; hypothetical protein 1147878..1148783 Bordetella bronchiseptica RB50 2663133 NP_887613.1 CDS BB1067 NC_002927.3 1148830 1149807 R Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 9.6e-34, 35.86% id in 329 aa, and to Comamonas testosteroni Orf4 protein SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 4e-31, 34.92% id in 315 aa; hypothetical protein complement(1148830..1149807) Bordetella bronchiseptica RB50 2662702 NP_887614.1 CDS BB1068 NC_002927.3 1149804 1151285 R Similar to Pseudomonas aeruginosa probable aldehyde dehydrogenase pa3504 SWALL:Q9HYA5 (EMBL:AE004771) (494 aa) fasta scores: E(): 4e-65, 44.58% id in 471 aa, and to Rhizobium loti aldehyde dehydrogenase mll2319 SWALL:Q98IP1 (EMBL:AP002999) (498 aa) fasta scores: E(): 5.7e-63, 46.45% id in 480 aa; aldehyde dehydrogenase complement(1149804..1151285) Bordetella bronchiseptica RB50 2662735 NP_887615.1 CDS BB1069 NC_002927.3 1151394 1153004 D Similar to Rhizobium loti alcohol dehydrogenase mlr2604 SWALL:Q98I22 (EMBL:AP003000) (538 aa) fasta scores: E(): 3.2e-71, 39.51% id in 534 aa, and to Agrobacterium tumefaciens oxidoreductase, gmc family atu6063 or agr_pti_129 SWALL:Q8U672 (EMBL:AE009425) (541 aa) fasta scores: E(): 4.9e-71, 41.5% id in 530 aa; dehydrogenase 1151394..1153004 Bordetella bronchiseptica RB50 2662729 NP_887616.1 CDS BB1070 NC_002927.3 1153037 1153834 D Similar to Yersinia pestis hypothetical protein Ypo3647 SWALL:Q8ZAY5 (EMBL:AJ414158) (275 aa) fasta scores: E(): 3.2e-49, 48.48% id in 264 aa, and to Rhizobium etli hypothetical protein yp053 SWALL:AAM54941 (EMBL:U80928) (169 aa) fasta scores: E(): 3.3e-27, 47.5% id in 160 aa; hypothetical protein 1153037..1153834 Bordetella bronchiseptica RB50 2663380 NP_887617.1 CDS BB1071 NC_002927.3 1153989 1154810 D Similar to Bacillus subtilis aliphatic sulfonates transport permease SsuC SWALL:SSUC_BACSU (SWALL:P40401) (276 aa) fasta scores: E(): 3.2e-39, 42.3% id in 260 aa, and to Agrobacterium tumefaciens ABC transporter membrane spanning protein SsuC or atu6057 or agr_pti_116 SWALL:Q8U678 (EMBL:AE009424) (313 aa) fasta scores: E(): 5.3e-54, 58.26% id in 242 aa; ABC transporter permease 1153989..1154810 Bordetella bronchiseptica RB50 2663441 NP_887618.1 CDS BB1072 NC_002927.3 1154823 1155575 D Similar to Pseudomonas putida AtsC SWALL:Q9WWU7 (EMBL:AF126201) (287 aa) fasta scores: E(): 4.9e-39, 51.02% id in 243 aa, and to Agrobacterium tumefaciens ABC transporter nucleotide binding/ATPase SsuB or atu6058 or agr_pti_117 SWALL:Q8U677 (EMBL:AE009424) (267 aa) fasta scores: E(): 1.6e-44, 56.91% id in 246 aa; sulfate ABC transporter ATP-binding protein 1154823..1155575 Bordetella bronchiseptica RB50 2662789 NP_887619.1 CDS BB1073 NC_002927.3 1155618 1156571 D Similar to Bacillus subtilis aliphatic sulfonates binding protein precursor SsuA SWALL:SSUA_BACSU (SWALL:P40400) (332 aa) fasta scores: E(): 9.8e-19, 28.57% id in 301 aa, and to Agrobacterium tumefaciens ABC transporter substrate-binding protein ssua or atu6059 or agr_pti_119 SWALL:Q8U676 (EMBL:AE009424) (320 aa) fasta scores: E(): 1.1e-37, 36.62% id in 314 aa; substrate binding component of ABC transporter 1155618..1156571 Bordetella bronchiseptica RB50 2662741 NP_887620.1 CDS BB1074 NC_002927.3 1156592 1157278 R Similar to Yersinia pestis GntR-family transcriptional regulatory protein ypo3651 SWALL:Q8ZAY1 (EMBL:AJ414158) (220 aa) fasta scores: E(): 7.9e-24, 40.09% id in 222 aa, and to Rhizobium etli hypothetical protein yp052 SWALL:AAM54940 (EMBL:U80928) (229 aa) fasta scores: E(): 1.6e-27, 42.54% id in 228 aa; GntR family transcriptional regulator complement(1156592..1157278) Bordetella bronchiseptica RB50 2663868 NP_887621.1 CDS BB1075 NC_002927.3 1157422 1157829 D Similar to Acinetobacter calcoaceticus 4-carboxymuconolactone decarboxylase PcaC SWALL:DC4C_ACICA (SWALL:P20370) (134 aa) fasta scores: E(): 6.3e-18, 41.6% id in 125 aa, and to Rhizobium etli probable gamma-carboxymuconolactone decarboxylase PcaC1 SWALL:AAM54935 (EMBL:U80928) (158 aa) fasta scores: E(): 5.2e-27, 54.91% id in 122 aa; carboxymuconolactone decarboxylase 1157422..1157829 Bordetella bronchiseptica RB50 2662890 NP_887622.1 CDS BB1076 NC_002927.3 1157878 1158732 D Similar to Mycobacterium tuberculosis hypothetical protein rv3510c or mtv023.17 or mt3614 SWALL:O53555 (EMBL:AL022022) (278 aa) fasta scores: E(): 2.9e-12, 27.08% id in 288 aa, and to Streptomyces griseus subsp. griseus NonC SWALL:Q9XDF3 (EMBL:AF074603) (317 aa) fasta scores: E(): 2.4e-09, 27.82% id in 248 aa; hypothetical protein 1157878..1158732 Bordetella bronchiseptica RB50 2662788 NP_887623.1 CDS BB1077 NC_002927.3 1158738 1159595 D Similar to Sulfolobus solfataricus hypothetical protein sso2112 or c02006 SWALL:P95886 (EMBL:Y08256) (269 aa) fasta scores: E(): 8.8e-10, 28.57% id in 294 aa, and to Mycobacterium tuberculosis hypothetical protein rv2303c or mtcy339.06 or mt2360 SWALL:Q50662 (EMBL:Z77163) (307 aa) fasta scores: E(): 8.9e-16, 27.36% id in 296 aa; hypothetical protein 1158738..1159595 Bordetella bronchiseptica RB50 2663224 NP_887624.1 CDS BB1078 NC_002927.3 1159654 1160628 D Similar to Rhizobium meliloti hypothetical protein ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 6.2e-47, 44.69% id in 311 aa, and to Agrobacterium tumefaciens hypothetical protein atu4727 or agr_l_312 SWALL:Q8U6S9 (EMBL:AE009401) (329 aa) fasta scores: E(): 8e-45, 43.12% id in 320 aa; hypothetical protein 1159654..1160628 Bordetella bronchiseptica RB50 2663465 NP_887625.1 CDS BB1079 NC_002927.3 1160642 1161904 D Similar to Methanosarcina mazei hydrolase mm2650 SWALL:AAM32346 (EMBL:AE013511) (264 aa) fasta scores: E(): 1.4e-06, 24.4% id in 254 aa, and to Rhizobium etli hypothetical protein yp051 SWALL:AAM54939 (EMBL:U80928) (409 aa) fasta scores: E(): 2.6e-56, 43.6% id in 399 aa; hydrolase 1160642..1161904 Bordetella bronchiseptica RB50 2663443 NP_887626.1 CDS BB1080 NC_002927.3 1162097 1162774 D Similar to Salmonella typhimurium, and Salmonella typhi SlsA or stm3761 or sty4025 SWALL:Q9Z622 (EMBL:AF106566) (226 aa) fasta scores: E(): 1.7e-73, 88.44% id in 225 aa, and to Salmonella typhi hypothetical protein Sty0948 SWALL:Q8Z819 (EMBL:AL627268) (225 aa) fasta scores: E(): 5.5e-74, 89.77% id in 225 aa; isochorismatase 1162097..1162774 Bordetella bronchiseptica RB50 2663851 NP_887627.1 CDS BB1081 NC_002927.3 1162967 1163911 D Similar to Yersinia pestis LysR family transcriptional regulatory protein ypo2150 SWALL:Q8ZEL4 (EMBL:AJ414151) (301 aa) fasta scores: E(): 3.4e-52, 48.33% id in 300 aa, and to Ralstonia solanacearum probable transcription regulator protein rsp0662 or rs01787 SWALL:Q8XS19 (EMBL:AL646080) (297 aa) fasta scores: E(): 2.2e-52, 49.66% id in 298 aa; LysR family transcriptional regulator 1162967..1163911 Bordetella bronchiseptica RB50 2662687 NP_887628.1 CDS BB1082 NC_002927.3 1163966 1164463 D Similar to Clostridium acetobutylicum nh2-acetyltransferase cap0111 SWALL:Q97TJ0 (EMBL:AE001438) (162 aa) fasta scores: E(): 1e-13, 33.33% id in 150 aa, and to Staphylococcus aureus hypothetical protein Mw2581 SWALL:BAB96446 (EMBL:AP004831) (166 aa) fasta scores: E(): 1.1e-11, 28.84% id in 156 aa; acetyltransferase 1163966..1164463 Bordetella bronchiseptica RB50 2662727 NP_887629.1 CDS BB1083 NC_002927.3 1164743 1165963 R Similar to Ralstonia solanacearum hypothetical protein rsc1197 or rs05729 SWALL:Q8Y047 (EMBL:AL646063) (405 aa) fasta scores: E(): 2.1e-60, 44.78% id in 393 aa, and to Caulobacter crescentus hypothetical protein Cc3562 WALL:Q9A2J9 (EMBL:AE006014) (433 aa) fasta scores: E(): 2.5e-68, 47% id in 400 aa; hypothetical protein complement(1164743..1165963) Bordetella bronchiseptica RB50 2662734 NP_887630.1 CDS BB1084 NC_002927.3 1165980 1166579 R Similar to Streptomyces coelicolor transcriptional regulator sco3833 or sch69.03C SWALL:Q9XA31 (EMBL:AL079308) (209 aa) fasta scores: E(): 5e-10, 33.14% id in 181 aa, and to Azoarcus evansii regulator SWALL:Q9FA56 (EMBL:AJ278756) (194 aa) fasta scores: E(): 5.5e-10, 28.93% id in 197 aa; TetR family transcriptional regulator complement(1165980..1166579) Bordetella bronchiseptica RB50 2662731 NP_887631.1 CDS BB1085 NC_002927.3 1166712 1167716 R Similar to Variovorax paradoxus, and Burkholderia cepacia 2,4-diphenoxyacetic acid gene cluster SWALL:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 1e-38, 39.55% id in 316 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1e-36, 40.37% id in 317 aa; hypothetical protein complement(1166712..1167716) Bordetella bronchiseptica RB50 2662714 NP_887632.1 CDS BB1086 NC_002927.3 1167779 1168957 R Similar to Archaeoglobus fulgidus 3-ketoacyl-CoA thiolase af2416 SWALL:O30255 (EMBL:AE001108) (384 aa) fasta scores: E(): 1.7e-41, 39.39% id in 396 aa, and to Methanopyrus kandleri acetyl-CoA acetyltransferase mk1378 SWALL:Q8TVL1 (EMBL:AE010431) (394 aa) fasta scores: E(): 4.2e-39, 37.37% id in 388 aa; thiolase complement(1167779..1168957) Bordetella bronchiseptica RB50 2663563 NP_887633.1 CDS BB1087 NC_002927.3 1168988 1169767 R Similar to Pseudomonas putida Fadb1X SWALL:Q9AHX8 (EMBL:AF290950) (257 aa) fasta scores: E(): 1.7e-27, 39.53% id in 258 aa, and to Caulobacter crescentus enoyl-CoA hydratase cc0006 SWALL:Q9AC55 (EMBL:AE005675) (262 aa) fasta scores: E(): 1.1e-30, 44.48% id in 254 aa; enoyl-CoA hydratase complement(1168988..1169767) Bordetella bronchiseptica RB50 2663634 NP_887634.1 CDS BB1088 NC_002927.3 1169850 1170635 D Similar to Synechocystis sp. 3-oxoacyl-ACP reductase 1 FabG1 or slr0886 SWALL:FAG1_SYNY3 (SWALL:P73574) (247 aa) fasta scores: E(): 1.9e-23, 38.73% id in 253 aa, and to Anabaena sp. 3-oxoacyl-ACP reductase FabG or alr1894 SWALL:Q8YVT0 (EMBL:AP003587) (251 aa) fasta scores: E(): 1.3e-23, 36.61% id in 254 aa; short chain dehydrogenase 1169850..1170635 Bordetella bronchiseptica RB50 2662753 NP_887635.1 CDS BB1089 NC_002927.3 1171039 1171833 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1171039..1171833 Bordetella bronchiseptica RB50 2662738 NP_887636.1 CDS BB1090 NC_002927.3 1171833 1172969 D Similar to Rhodococcus sp. AD45 racemase IsoG SWALL:Q9RBP6 (EMBL:AJ249207) (405 aa) fasta scores: E(): 8.5e-41, 35.42% id in 367 aa, and to Streptomyces coelicolor racemase sco0362 or scf41.21 SWALL:Q9RJU8 (EMBL:AL117387) (403 aa) fasta scores: E(): 2.6e-36, 37.13% id in 377 aa; hypothetical protein 1171833..1172969 Bordetella bronchiseptica RB50 2663697 NP_887637.1 CDS BB1091 NC_002927.3 1173009 1173923 D Similar to Pseudomonas aeruginosa probable transcriptional regulator pa1998 SWALL:Q9I2B1 (EMBL:AE004626) (306 aa) fasta scores: E(): 2.2e-18, 30.1% id in 289 aa, and to Rhizobium meliloti transcriptional regulator protein rb0123 or smb20123 SWALL:Q92X39 (EMBL:AL603642) (298 aa) fasta scores: E(): 1.2e-20, 28.76% id in 292 aa; LysR family transcriptional regulator 1173009..1173923 Bordetella bronchiseptica RB50 2663625 NP_887638.1 CDS BB1092 NC_002927.3 1174036 1175019 D Similar to Rhizobium meliloti hypothetical protein ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 4.7e-37, 35.04% id in 331 aa, and to Xanthomonas axonopodis hypothetical protein Xac2278 SWALL:AAM37131 (EMBL:AE011865) (315 aa) fasta scores: E(): 5.6e-35, 37.07% id in 321 aa; hypothetical protein 1174036..1175019 Bordetella bronchiseptica RB50 2662995 NP_887639.1 CDS BB1093 NC_002927.3 1175340 1176317 D Similar to Xanthomonas campestris hypothetical protein Xcc0756 SWALL:AAM40071 (EMBL:AE012175) (347 aa) fasta scores: E(): 8.9e-52, 47.46% id in 316 aa, and to Brucella melitensis hypothetical membrane spanning protein Bmeii0279 SWALL:Q8YD98 (EMBL:AE009666) (331 aa) fasta scores: E(): 6.9e-51, 45.79% id in 321 aa; hypothetical protein 1175340..1176317 Bordetella bronchiseptica RB50 2663216 NP_887640.1 CDS BB1094 NC_002927.3 1176298 1176777 R Similar to Rhizobium loti hypothetical protein Mlr1489 SWALL:Q98KG3 (EMBL:AP002997) (159 aa) fasta scores: E(): 8.3e-12, 31.41% id in 156 aa, and to Pseudomonas aeruginosa hypothetical protein Pa5385 SWALL:Q9HTH9 (EMBL:AE004951) (159 aa) fasta scores: E(): 2.3e-09, 29.67% id in 155 aa; hypothetical protein complement(1176298..1176777) Bordetella bronchiseptica RB50 2662967 NP_887641.1 CDS BB1095 NC_002927.3 1176899 1177870 R Similar to Rhizobium meliloti hypothetical protein ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 9.8e-50, 48.36% id in 306 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 4.9e-42, 40.92% id in 303 aa; hypothetical protein complement(1176899..1177870) Bordetella bronchiseptica RB50 2663324 NP_887642.1 CDS BB1096 NC_002927.3 1177963 1178844 R Similar to Pseudomonas aeruginosa probable transcriptional regulator pa3594 SWALL:Q9HY32 (EMBL:AE004780) (295 aa) fasta scores: E(): 9.1e-46, 48.74% id in 279 aa, and to Xanthomonas axonopodis transcriptional regulator LysR family xac0316 SWALL:AAM35208 (EMBL:AE011657) (295 aa) fasta scores: E(): 8e-32, 38.56% id in 293 aa; LysR family transcriptional regulator complement(1177963..1178844) Bordetella bronchiseptica RB50 2662772 NP_887643.1 CDS BB1097 NC_002927.3 1178957 1180078 D Similar to Pseudomonas aeruginosa hypothetical protein Pa3592 SWALL:Q9HY34 (EMBL:AE004779) (395 aa) fasta scores: E(): 2.5e-81, 56.78% id in 361 aa, and to Rhizobium meliloti conserved membrane-anchored protein rb0848 or smb21182 SWALL:Q92V66 (EMBL:AL603645) (394 aa) fasta scores: E(): 3.3e-52, 42.89% id in 359 aa; hypothetical protein 1178957..1180078 Bordetella bronchiseptica RB50 2663882 NP_887644.1 CDS BB1098 NC_002927.3 1180151 1181809 D Similar to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase pa3593 SWALL:Q9HY33 (EMBL:AE004779) (575 aa) fasta scores: E(): 5e-121, 59.77% id in 542 aa, and to Mycobacterium tuberculosis acyl CoA dehydrogenase fade35 or rv3797 or mtv026.02 or mt3904 SWALL:O53577 (EMBL:AL022076) (593 aa) fasta scores: E(): 1.6e-47, 37.41% id in 564 aa; acyl-CoA dehydrogenase 1180151..1181809 Bordetella bronchiseptica RB50 2663199 NP_887645.1 CDS BB1099 NC_002927.3 1181845 1182840 D Similar to Rhizobium meliloti hypothetical protein ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 7.6e-39, 37.82% id in 312 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 7e-38, 37.57% id in 322 aa; no significant database matches; hypothetical protein 1181845..1182840 Bordetella bronchiseptica RB50 2662744 NP_887646.1 CDS mgtA NC_002927.3 1183238 1185994 D P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 1183238..1185994 Bordetella bronchiseptica RB50 2662874 NP_887647.1 CDS BB1101 NC_002927.3 1186083 1187156 D Similar to Brucella melitensis sensory transduction histidine kinase bmeii0052 SWALL:Q8YDX2 (EMBL:AE009643) (355 aa) fasta scores: E(): 9.4e-55, 51.19% id in 334 aa, and to Xanthomonas axonopodis nodulation protein NodV or xac2149 SWALL:AAM37002 (EMBL:AE011850) (457 aa) fasta scores: E(): 1.9e-60, 51.85% id in 351 aa; two component sensor kinase 1186083..1187156 Bordetella bronchiseptica RB50 2663207 NP_887648.1 CDS BB1102 NC_002927.3 1187153 1187776 D Similar to Xanthomonas axonopodis nodulation protein NodW or xac2150 SWALL:AAM37003 (EMBL:AE011850) (203 aa) fasta scores: E(): 2.3e-50, 70.64% id in 201 aa, and to Brucella melitensis nodulation protein bmeii0051 SWALL:Q8YDX3 (EMBL:AE009643) (212 aa) fasta scores: E(): 2.7e-42, 61.02% id in 195 aa; two component response regulator 1187153..1187776 Bordetella bronchiseptica RB50 2662640 NP_887649.1 CDS BB1103 NC_002927.3 1188020 1189018 D Similar to Rhizobium meliloti hypothetical protein ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.7e-37, 36.94% id in 314 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1e-36, 36.3% id in 325 aa; no significant database matches; hypothetical protein 1188020..1189018 Bordetella bronchiseptica RB50 2663114 NP_887650.1 CDS BB1104 NC_002927.3 1189075 1190226 D Similar to Beta vulgaris choline monooxygenase, chloroplast precursor Cmo SWALL:CHMO_BETVU (SWALL:O22553) (446 aa) fasta scores: E(): 4.9e-26, 30.31% id in 376 aa, and to Suaeda liaotungensis choline monooxygenase Cmo SWALL:AAM43920 (EMBL:AF354442) (442 aa) fasta scores: E(): 3.6e-26, 30.25% id in 357 aa; [2Fe-2S] protein 1189075..1190226 Bordetella bronchiseptica RB50 2662757 NP_887651.1 CDS BB1105 NC_002927.3 1190223 1191329 D Similar to Rhizobium loti hypothetical protein Mll9370 SWALL:Q981H8 (EMBL:AP003016) (399 aa) fasta scores: E(): 0.37, 26.56% id in 384 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2597 SWALL:Q9I0P0 (EMBL:AE004688) (383 aa) fasta scores: E(): 1.6, 28.46% id in 260 aa; hypothetical protein 1190223..1191329 Bordetella bronchiseptica RB50 2662745 NP_887652.1 CDS BB1106 NC_002927.3 1191364 1191684 D Similar to Rhodococcus erythropolis rhodocoxin ThcC SWALL:THCC_RHOER (SWALL:P43493) (106 aa) fasta scores: E(): 1.8e-12, 43.56% id in 101 aa, and to Corynebacterium glutamicum ferredoxin cgl0549 SWALL:BAB97942 (EMBL:AP005275) (106 aa) fasta scores: E(): 8.4e-13, 46.22% id in 106 aa; ferredoxin 1191364..1191684 Bordetella bronchiseptica RB50 2662746 NP_887653.1 CDS BB1107 NC_002927.3 1191692 1192942 D Similar to Pseudomonas putida putidaredoxin reductase CamA SWALL:CAMA_PSEPU (SWALL:P16640) (422 aa) fasta scores: E(): 8.9e-64, 49.26% id in 408 aa, and to Acinetobacter sp. EB104 ferredoxin reductase NonO SWALL:Q93SX2 (EMBL:AJ311718) (401 aa) fasta scores: E(): 3.3e-62, 50% id in 400 aa; ferredoxin reductase 1191692..1192942 Bordetella bronchiseptica RB50 2663479 NP_887654.1 CDS dapA NC_002927.3 1192972 1193877 D Similar to Escherichia coli dihydrodipicolinate synthase DapA or b2478 SWALL:DAPA_ECOLI (SWALL:P05640) (292 aa) fasta scores: E(): 1.8e-23, 32.98% id in 285 aa, and to Xanthomonas axonopodis dihydroxydipicolinate synthase DapA or xac1760 SWALL:AAM36624 (EMBL:AE011807) (302 aa) fasta scores: E(): 7.7e-28, 40.22% id in 261 aa; dihydrodipicolinate synthase 1192972..1193877 Bordetella bronchiseptica RB50 2662843 NP_887655.1 CDS lldD NC_002927.3 1193874 1195067 D Similar to Escherichia coli L-lactate dehydrogenase LldD or LctD or b3605 SWALL:LLDD_ECOLI (SWALL:P33232) (396 aa) fasta scores: E(): 1e-45, 38.56% id in 376 aa, and to Pseudomonas putida l MdlB SWALL:MDLB_PSEPU (SWALL:P20932) (393 aa) fasta scores: E(): 2.8e-62, 48.08% id in 391 aa; FMN-dependent dehydrogenase 1193874..1195067 Bordetella bronchiseptica RB50 2663180 NP_887656.1 CDS BB1110 NC_002927.3 1195064 1195666 D Similar to Bacillus halodurans hypothetical protein Bh2278 SWALL:YM78_BACHD (SWALL:Q9KAK9) (209 aa) fasta scores: E(): 2.3e-22, 38.07% id in 197 aa, and to Agrobacterium tumefaciens hypothetical protein atu5415 or agr_pat_605 SWALL:Q8UJR1 (EMBL:AE008962) (235 aa) fasta scores: E(): 4.6e-22, 35.46% id in 203 aa; hypothetical protein 1195064..1195666 Bordetella bronchiseptica RB50 2663442 NP_887657.1 CDS BB1111 NC_002927.3 1195719 1196555 D Similar to Alcaligenes eutrophus hypothetical 30.8 kDa protein SWALL:Q9L789 (EMBL:AF225972) (279 aa) fasta scores: E(): 3.8e-36, 41.69% id in 259 aa, and to Ralstonia solanacearum probable transcription regulator protein rsc3411 or rs01720 SWALL:Q8XTY4 (EMBL:AL646075) (262 aa) fasta scores: E(): 5.9e-32, 39.76% id in 254 aa; IclR family transcriptional regulator 1195719..1196555 Bordetella bronchiseptica RB50 2663435 NP_887658.1 CDS BB1112 NC_002927.3 1196612 1197532 D Similar to Escherichia coli cyn operon transcriptional activator CynR or b0338 SWALL:CYNR_ECOLI (SWALL:P27111) (311 aa) fasta scores: E(): 1.2e-13, 28.91% id in 294 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa2206 SWALL:Q9I1R1 (EMBL:AE004647) (315 aa) fasta scores: E(): 1.1e-14, 27.33% id in 289 aa; LysR family transcriptional regulator 1196612..1197532 Bordetella bronchiseptica RB50 2663102 NP_887659.1 CDS BB1113 NC_002927.3 1197704 1198501 D Similar to Rhizobium loti probable short chain dehydrogenase mll1981 SWALL:Q98JE4 (EMBL:AP002998) (258 aa) fasta scores: E(): 7.9e-21, 39.83% id in 246 aa, and to Caulobacter crescentus oxidoreductase, short-chain dehydrogenase/reductase family cc2655 SWALL:Q9A514 (EMBL:AE005933) (267 aa) fasta scores: E(): 8.9e-22, 39.39% id in 264 aa; short chain dehydrogenase 1197704..1198501 Bordetella bronchiseptica RB50 2663285 NP_887660.1 CDS BB1114 NC_002927.3 1198536 1199513 D Similar to Alcaligenes eutrophus hypothetical 35.6 kDa protein in gbd 5'region precursor SWALL:YGB7_ALCEU (SWALL:Q44018) (327 aa) fasta scores: E(): 3.6e-39, 39.62% id in 318 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 5.8e-25, 34.16% id in 281 aa; hypothetical protein 1198536..1199513 Bordetella bronchiseptica RB50 2663160 NP_887661.1 CDS BB1115 NC_002927.3 1199515 1200342 D no significant database matches; hypothetical protein 1199515..1200342 Bordetella bronchiseptica RB50 2662849 NP_887662.1 CDS BB1116 NC_002927.3 1200356 1201288 R Similar to Klebsiella pneumoniae nitrilase, bromoxynil-specific Bxn SWALL:NRLB_KLEPO (SWALL:P10045) (349 aa) fasta scores: E(): 4.4e-25, 34.5% id in 313 aa, and to Nicotiana tabacum nitrilase 4 Nit4 SWALL:NRL4_TOBAC (SWALL:Q42965) (349 aa) fasta scores: E(): 3.9e-68, 53.72% id in 309 aa; nitrilase complement(1200356..1201288) Bordetella bronchiseptica RB50 2663131 NP_887663.1 CDS BB1117 NC_002927.3 1201330 1201692 R Similar to Streptomyces olivaceus ElmJ SWALL:Q9L4X8 (EMBL:AF263463) (143 aa) fasta scores: E(): 0.0082, 30.47% id in 105 aa, and to Xanthomonas campestris hypothetical protein Xcc2241 SWALL:AAM41520 (EMBL:AE012331) (135 aa) fasta scores: E(): 0.027, 33.01% id in 106 aa; hypothetical protein complement(1201330..1201692) Bordetella bronchiseptica RB50 2663568 NP_887664.1 CDS BB1118 NC_002927.3 1201732 1202700 R Similar to Variovorax paradoxus, and Burkholderia cepacia 2,4-diphenoxyacetic acid gene cluster SWALL:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 1e-33, 37.83% id in 296 aa, and to Comamonas testosteroni Orf4 protein SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 3.6e-32, 36.57% id in 309 aa; hypothetical protein complement(1201732..1202700) Bordetella bronchiseptica RB50 2663866 NP_887665.1 CDS BB1119 NC_002927.3 1202922 1203815 D Similar to Bacillus subtilis als operon regulatory protein AlsR SWALL:ALSR_BACSU (SWALL:Q04778) (302 aa) fasta scores: E(): 5.4e-36, 36.36% id in 286 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa5029 SWALL:Q9HUE0 (EMBL:AE004916) (301 aa) fasta scores: E(): 1.7e-36, 40.34% id in 290 aa; LysR family transcriptional regulator 1202922..1203815 Bordetella bronchiseptica RB50 2663546 NP_887666.1 CDS BB1120 NC_002927.3 1203831 1204457 R Similar to Ralstonia solanacearum VsrD SWALL:Q45416 (EMBL:U18135) (210 aa) fasta scores: E(): 2.2e-29, 42.85% id in 210 aa, and to Ralstonia solanacearum response regulator transcription regulator protein VsrD or rsc0292 or rs03259 SWALL:Q8Y2P3 (EMBL:AL646058) (210 aa) fasta scores: E(): 2.5e-29, 42.85% id in 210 aa; two-component system response regulator complement(1203831..1204457) Bordetella bronchiseptica RB50 2663721 NP_887667.1 CDS BB1121 NC_002927.3 1204477 1205466 R hypothetical protein complement(1204477..1205466) Bordetella bronchiseptica RB50 2663491 NP_887668.1 CDS BB1122 NC_002927.3 1205622 1206719 D two-component system sensor kinase 1205622..1206719 Bordetella bronchiseptica RB50 2663525 NP_887669.1 CDS BB1123 NC_002927.3 1206716 1207504 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1206716..1207504) Bordetella bronchiseptica RB50 2662795 NP_887670.1 CDS BB1124 NC_002927.3 1207524 1208321 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1207524..1208321) Bordetella bronchiseptica RB50 2663522 NP_887671.1 CDS BB1125 NC_002927.3 1208331 1210208 R activates fatty acids by binding to coenzyme A; AMP-binding protein complement(1208331..1210208) Bordetella bronchiseptica RB50 2663497 NP_887672.1 CDS BB1126 NC_002927.3 1210235 1212022 R acyl-CoA dehydrogenase complement(1210235..1212022) Bordetella bronchiseptica RB50 2663578 NP_887673.1 CDS BB1127 NC_002927.3 1212140 1213360 D hypothetical protein 1212140..1213360 Bordetella bronchiseptica RB50 2663704 NP_887674.1 CDS BB1128 NC_002927.3 1213396 1214034 D hypothetical protein 1213396..1214034 Bordetella bronchiseptica RB50 2663719 NP_887675.1 CDS BB1129 NC_002927.3 1214054 1214647 R hypothetical protein complement(1214054..1214647) Bordetella bronchiseptica RB50 2663732 NP_887676.1 CDS BB1130 NC_002927.3 1214640 1215287 R hypothetical protein complement(1214640..1215287) Bordetella bronchiseptica RB50 2663716 NP_887677.1 CDS BB1131 NC_002927.3 1215284 1217917 R hypothetical protein complement(1215284..1217917) Bordetella bronchiseptica RB50 2663790 NP_887678.1 CDS BB1132 NC_002927.3 1217928 1218656 R hypothetical protein complement(1217928..1218656) Bordetella bronchiseptica RB50 2663549 NP_887679.1 CDS BB1133 NC_002927.3 1218876 1219505 D hypothetical protein 1218876..1219505 Bordetella bronchiseptica RB50 2663550 NP_887680.1 CDS BB1134 NC_002927.3 1219610 1220116 D hypothetical protein 1219610..1220116 Bordetella bronchiseptica RB50 2663598 NP_887681.1 CDS BB1135 NC_002927.3 1220123 1220512 R hypothetical protein complement(1220123..1220512) Bordetella bronchiseptica RB50 2663515 NP_887682.1 CDS BB1136 NC_002927.3 1220571 1221650 R calcium/proton antiporter complement(1220571..1221650) Bordetella bronchiseptica RB50 2663552 NP_887683.1 CDS BB1137 NC_002927.3 1221847 1222278 D hypothetical protein 1221847..1222278 Bordetella bronchiseptica RB50 2663087 NP_887684.1 CDS BB1138 NC_002927.3 1222337 1223083 D GntR family transcriptional regulator 1222337..1223083 Bordetella bronchiseptica RB50 2663532 NP_887685.1 CDS BB1139 NC_002927.3 1223080 1223934 D hypothetical protein 1223080..1223934 Bordetella bronchiseptica RB50 2662719 NP_887686.1 CDS BB1140 NC_002927.3 1223931 1224227 D hypothetical protein 1223931..1224227 Bordetella bronchiseptica RB50 2663805 NP_887687.1 CDS BB1141 NC_002927.3 1224228 1224890 R GntR family transcriptional regulator complement(1224228..1224890) Bordetella bronchiseptica RB50 2663078 NP_887688.1 CDS BB1142 NC_002927.3 1225152 1226537 D amidase 1225152..1226537 Bordetella bronchiseptica RB50 2663701 NP_887689.1 CDS BB1143 NC_002927.3 1226540 1227736 D hypothetical protein 1226540..1227736 Bordetella bronchiseptica RB50 2663772 NP_887690.1 CDS BB1144 NC_002927.3 1227757 1228560 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1227757..1228560 Bordetella bronchiseptica RB50 2663556 NP_887691.1 CDS BB1145 NC_002927.3 1228640 1229617 D hypothetical protein 1228640..1229617 Bordetella bronchiseptica RB50 2663520 NP_887692.1 CDS BB1146 NC_002927.3 1229658 1230515 D nitrate/sulfonate/bicarbonate ABC transporter permease 1229658..1230515 Bordetella bronchiseptica RB50 2663545 NP_887693.1 CDS BB1147 NC_002927.3 1230523 1231272 D ABC transporter ATP-binding protein 1230523..1231272 Bordetella bronchiseptica RB50 2663028 NP_887694.1 CDS BB1148 NC_002927.3 1231294 1232166 D hypothetical protein 1231294..1232166 Bordetella bronchiseptica RB50 2662998 NP_887695.1 CDS BB1149 NC_002927.3 1232195 1232974 D short chain dehydrogenase 1232195..1232974 Bordetella bronchiseptica RB50 2662780 NP_887696.1 CDS BB1150 NC_002927.3 1233008 1233805 R transcriptional regulator complement(1233008..1233805) Bordetella bronchiseptica RB50 2663502 NP_887697.1 CDS BB1151 NC_002927.3 1234057 1235271 D branched-chain amino acid-binding protein 1234057..1235271 Bordetella bronchiseptica RB50 2663537 NP_887698.1 CDS BB1152 NC_002927.3 1235268 1235747 D hypothetical protein 1235268..1235747 Bordetella bronchiseptica RB50 2663528 NP_887699.1 CDS BB1153 NC_002927.3 1235764 1237395 D acetyl-CoA synthetase 1235764..1237395 Bordetella bronchiseptica RB50 2663584 NP_887700.1 CDS BB1154 NC_002927.3 1237426 1237818 D hypothetical protein 1237426..1237818 Bordetella bronchiseptica RB50 2663738 NP_887701.1 CDS BB1155 NC_002927.3 1237812 1238678 D branched chain amino acid ABC transporter permease 1237812..1238678 Bordetella bronchiseptica RB50 2663749 NP_887702.1 CDS BB1156 NC_002927.3 1238682 1239644 D branched chain amino acid ABC transporter permease 1238682..1239644 Bordetella bronchiseptica RB50 2663757 NP_887703.1 CDS livG NC_002927.3 1239641 1240429 D high-affinity branched-chain amino acid transport ATP-binding protein 1239641..1240429 Bordetella bronchiseptica RB50 2663765 NP_887704.1 CDS livF NC_002927.3 1240422 1241111 D high-affinity branched-chain amino acid transport ATP-binding protein 1240422..1241111 Bordetella bronchiseptica RB50 2663798 NP_887705.1 CDS BB1159 NC_002927.3 1241130 1242212 D ortholog of Bordetella pertussis (BX470248) BP2883; NADH:flavin oxidoreductase 1241130..1242212 Bordetella bronchiseptica RB50 2663029 NP_887706.1 CDS BB1160 NC_002927.3 1242223 1243104 R ortholog of Bordetella pertussis (BX470248) BP2882; lysR family transcriptional regulator complement(1242223..1243104) Bordetella bronchiseptica RB50 2662707 NP_887707.1 CDS BB1161 NC_002927.3 1243163 1243858 D ortholog of Bordetella pertussis (BX470248) BP2881; hypothetical protein 1243163..1243858 Bordetella bronchiseptica RB50 2663736 NP_887708.1 CDS BB1162 NC_002927.3 1243848 1244357 D ortholog of Bordetella pertussis (BX470248) BP2880; hypothetical protein 1243848..1244357 Bordetella bronchiseptica RB50 2663789 NP_887709.1 CDS BB1163 NC_002927.3 1244354 1245586 D ortholog of Bordetella pertussis (BX470248) BP2879; membrane transport protein 1244354..1245586 Bordetella bronchiseptica RB50 2663527 NP_887710.1 CDS BB1164 NC_002927.3 1245534 1246436 R ortholog of Bordetella pertussis (BX470248) BP2878; LysR family transcriptional regulator complement(1245534..1246436) Bordetella bronchiseptica RB50 2663588 NP_887711.1 CDS BB1165 NC_002927.3 1246589 1247560 D ortholog of Bordetella pertussis (BX470248) BP2877; hypothetical protein 1246589..1247560 Bordetella bronchiseptica RB50 2663756 NP_887712.1 CDS BB1166 NC_002927.3 1247599 1248972 D ortholog of Bordetella pertussis (BX470248) BP2875; amidase 1247599..1248972 Bordetella bronchiseptica RB50 2663768 NP_887713.1 CDS ribE NC_002927.3 1249014 1249715 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1249014..1249715) Bordetella bronchiseptica RB50 2663074 NP_887714.1 CDS BB1168 NC_002927.3 1249982 1251019 D ortholog of Bordetella pertussis (BX470248) BP2873; hypothetical protein 1249982..1251019 Bordetella bronchiseptica RB50 2662992 NP_887715.1 CDS BB1169 NC_002927.3 1251120 1251581 D ortholog of Bordetella pertussis (BX470248) BP2872; AsnC family transcriptional regulator 1251120..1251581 Bordetella bronchiseptica RB50 2663083 NP_887716.1 CDS BB1170 NC_002927.3 1251597 1252145 R ortholog of Bordetella pertussis (BX470248) BP2871; hypothetical protein complement(1251597..1252145) Bordetella bronchiseptica RB50 2663740 NP_887717.1 CDS BB1171 NC_002927.3 1252287 1253777 R ortholog of Bordetella pertussis (BX470248) BP2870; acid CoA ligase complement(1252287..1253777) Bordetella bronchiseptica RB50 2663820 NP_887718.1 CDS BB1172 NC_002927.3 1253883 1254974 D ortholog of Bordetella pertussis (BX470248) BP2869; hypothetical protein 1253883..1254974 Bordetella bronchiseptica RB50 2663089 NP_887719.1 CDS BB1173 NC_002927.3 1254978 1255760 R ortholog of Bordetella pertussis (BX470248) BP2868; ABC transporter complement(1254978..1255760) Bordetella bronchiseptica RB50 2662755 NP_887720.1 CDS BB1174 NC_002927.3 1255770 1256558 R ortholog of Bordetella pertussis (BX470248) BP2867; ABC transporter ATP-binding protein complement(1255770..1256558) Bordetella bronchiseptica RB50 2663758 NP_887721.1 CDS BB1175 NC_002927.3 1256570 1257646 R ortholog of Bordetella pertussis (BX470248) BP2866; hypothetical protein complement(1256570..1257646) Bordetella bronchiseptica RB50 2663542 NP_887722.1 CDS BB1176 NC_002927.3 1257683 1258117 R ortholog of Bordetella pertussis (BX470248) BP2865; hypothetical protein complement(1257683..1258117) Bordetella bronchiseptica RB50 2663521 NP_887723.1 CDS BB1177 NC_002927.3 1258114 1259124 R ortholog of Bordetella pertussis (BX470248) BP2864; alcohol dehydrogenase complement(1258114..1259124) Bordetella bronchiseptica RB50 2663054 NP_887724.1 CDS BB1178 NC_002927.3 1259168 1260094 R ortholog of Bordetella pertussis (BX470248) BP2863; hypothetical protein complement(1259168..1260094) Bordetella bronchiseptica RB50 2663495 NP_887725.1 CDS BB1179 NC_002927.3 1260381 1260749 D ortholog of Bordetella pertussis (BX470248) BP2862; hypothetical protein 1260381..1260749 Bordetella bronchiseptica RB50 2662434 NP_887726.1 CDS BB1180 NC_002927.3 1260912 1263338 D ortholog of Bordetella pertussis (BX470248) BP2860; cation-transporting ATPase 1260912..1263338 Bordetella bronchiseptica RB50 2662424 NP_887727.1 CDS BB1181 NC_002927.3 1263387 1264079 D ortholog of Bordetella pertussis (BX470248) BP2859; hypothetical protein 1263387..1264079 Bordetella bronchiseptica RB50 2662385 NP_887728.1 CDS tyrB NC_002927.3 1264152 1265351 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1264152..1265351 Bordetella bronchiseptica RB50 2662377 NP_887729.1 CDS BB1183 NC_002927.3 1265536 1266162 D isochorismatase 1265536..1266162 Bordetella bronchiseptica RB50 2662334 NP_887730.1 CDS BB1184 NC_002927.3 1266211 1268187 R hypothetical protein complement(1266211..1268187) Bordetella bronchiseptica RB50 2662323 NP_887731.1 CDS BB1185 NC_002927.3 1268203 1268886 R hypothetical protein complement(1268203..1268886) Bordetella bronchiseptica RB50 2662292 NP_887732.1 CDS BB1186 NC_002927.3 1268967 1279007 R hemolysin complement(1268967..1279007) Bordetella bronchiseptica RB50 2662275 NP_887733.1 CDS BB1187 NC_002927.3 1279258 1279923 R LuxR family transcriptional regulator complement(1279258..1279923) Bordetella bronchiseptica RB50 2661883 NP_887734.1 CDS BB1188 NC_002927.3 1279945 1281387 R hemolysin D complement(1279945..1281387) Bordetella bronchiseptica RB50 2660273 NP_887735.1 CDS BB1189 NC_002927.3 1281390 1283564 R ABC transporter complement(1281390..1283564) Bordetella bronchiseptica RB50 2661729 NP_887736.1 CDS BB1190 NC_002927.3 1283542 1283757 R hypothetical protein complement(1283542..1283757) Bordetella bronchiseptica RB50 2660186 NP_887737.1 CDS BB1191 NC_002927.3 1283768 1285237 R outer membrane protein complement(1283768..1285237) Bordetella bronchiseptica RB50 2660283 NP_887738.1 CDS BB1192 NC_002927.3 1285589 1286779 R hypothetical protein complement(1285589..1286779) Bordetella bronchiseptica RB50 2662189 NP_887739.1 CDS arsR NC_002927.3 1287034 1287360 D transcription regulator ArsR 1287034..1287360 Bordetella bronchiseptica RB50 2660078 NP_887740.1 CDS arsB NC_002927.3 1287357 1288637 D arsenical pump membrane protein 1287357..1288637 Bordetella bronchiseptica RB50 2659693 NP_887741.1 CDS BB1195 NC_002927.3 1288678 1289643 R hypothetical protein complement(1288678..1289643) Bordetella bronchiseptica RB50 2660156 NP_887742.1 CDS BB1196 NC_002927.3 1289687 1290823 R hypothetical protein complement(1289687..1290823) Bordetella bronchiseptica RB50 2661775 NP_887743.1 CDS BB1197 NC_002927.3 1290853 1291908 R hypothetical protein complement(1290853..1291908) Bordetella bronchiseptica RB50 2661714 NP_887744.1 CDS BB1198 NC_002927.3 1291923 1292570 R TetR family transcriptional regulator complement(1291923..1292570) Bordetella bronchiseptica RB50 2660181 NP_887745.1 CDS BB1199 NC_002927.3 1292573 1293739 R acyl-CoA dehydrogenase complement(1292573..1293739) Bordetella bronchiseptica RB50 2660189 NP_887746.1 CDS BB1200 NC_002927.3 1293953 1294690 D short-chain dehydrogenase 1293953..1294690 Bordetella bronchiseptica RB50 2661697 NP_887747.1 CDS sugE NC_002927.3 1294693 1295028 D chaperone 1294693..1295028 Bordetella bronchiseptica RB50 2660207 NP_887748.1 CDS BB1202 NC_002927.3 1295025 1295645 D TetR family transcriptional regulator 1295025..1295645 Bordetella bronchiseptica RB50 2662205 NP_887749.1 CDS BB1203 NC_002927.3 1295706 1296590 R Similar to Rhizobium meliloti hypothetical protein ra1150 or sma2109 SWALL:Q92XU0 (EMBL:AE007300) (308 aa) fasta scores: E(): 2e-76, 70% id in 290 aa, and to Methanosarcina mazei nucleoside-diphosphate-sugar epimerase mm0150 SWALL:AAM29846 (EMBL:AE013236) (289 aa) fasta scores: E(): 8.1e-28, 32.75% id in 290 aa; hypothetical protein complement(1295706..1296590) Bordetella bronchiseptica RB50 2661746 NP_887750.1 CDS BB1204 NC_002927.3 1296698 1297651 D Similar to Rhizobium meliloti probable GstR transcriptional regulator ra1149 or sma2107 SWALL:Q92XU1 (EMBL:AE007300) (301 aa) fasta scores: E(): 4.1e-82, 71.18% id in 295 aa, and to Synechocystis sp. transcriptional regulator slr1245 SWALL:P73778 (EMBL:D90909) (302 aa) fasta scores: E(): 1.8e-37, 37.5% id in 288 aa; LysR family transcriptional regulator 1296698..1297651 Bordetella bronchiseptica RB50 2662518 NP_887751.1 CDS BB1205 NC_002927.3 1297681 1299258 R no significant database matches; hypothetical protein complement(1297681..1299258) Bordetella bronchiseptica RB50 2662546 NP_887752.1 CDS BB1206 NC_002927.3 1299607 1300356 R no significant database matches; hypothetical protein complement(1299607..1300356) Bordetella bronchiseptica RB50 2661648 NP_887753.1 CDS BB1207 NC_002927.3 1300601 1301395 D hypothetical protein 1300601..1301395 Bordetella bronchiseptica RB50 2662312 NP_887754.1 CDS BB1208 NC_002927.3 1301551 1303047 D methyl-accepting chemotaxis protein 1301551..1303047 Bordetella bronchiseptica RB50 2662384 NP_887755.1 CDS BB1209 NC_002927.3 1303257 1304174 R LysR family transcriptional regulator complement(1303257..1304174) Bordetella bronchiseptica RB50 2660139 NP_887756.1 CDS BB1210 NC_002927.3 1304283 1304726 D hypothetical protein 1304283..1304726 Bordetella bronchiseptica RB50 2659333 NP_887757.1 CDS BB1211 NC_002927.3 1304723 1305172 D hypothetical protein 1304723..1305172 Bordetella bronchiseptica RB50 2661946 NP_887758.1 CDS BB1212 NC_002927.3 1305174 1306607 R hypothetical protein complement(1305174..1306607) Bordetella bronchiseptica RB50 2661186 NP_887759.1 CDS BB1213 NC_002927.3 1306703 1307131 D hypothetical protein 1306703..1307131 Bordetella bronchiseptica RB50 2662587 NP_887760.1 CDS BB1214 NC_002927.3 1307306 1308283 D hypothetical protein 1307306..1308283 Bordetella bronchiseptica RB50 2660363 NP_887761.1 CDS BB1215 NC_002927.3 1308285 1309943 D hypothetical protein 1308285..1309943 Bordetella bronchiseptica RB50 2660275 NP_887762.1 CDS BB1216 NC_002927.3 1309959 1311386 D aldehyde dehydrogenase 1309959..1311386 Bordetella bronchiseptica RB50 2661771 NP_887763.1 CDS BB1217 NC_002927.3 1311428 1312627 D hypothetical protein 1311428..1312627 Bordetella bronchiseptica RB50 2660203 NP_887764.1 CDS BB1218 NC_002927.3 1312644 1313435 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1312644..1313435 Bordetella bronchiseptica RB50 2661285 NP_887765.1 CDS BB1219 NC_002927.3 1313444 1314361 R LysR family transcriptional regulator complement(1313444..1314361) Bordetella bronchiseptica RB50 2661737 NP_887766.1 CDS BB1220 NC_002927.3 1314427 1316130 D hypothetical protein 1314427..1316130 Bordetella bronchiseptica RB50 2661204 NP_887767.1 CDS BB1221 NC_002927.3 1316183 1316461 R hypothetical protein complement(1316183..1316461) Bordetella bronchiseptica RB50 2661630 NP_887768.1 CDS BB1222 NC_002927.3 1316819 1317070 D hypothetical protein 1316819..1317070 Bordetella bronchiseptica RB50 2662582 NP_887769.1 CDS BB1223 NC_002927.3 1317095 1317997 R no significant database matches; acetyltransferase complement(1317095..1317997) Bordetella bronchiseptica RB50 2662373 NP_887770.1 CDS aadA4 NC_002927.3 1318123 1318914 D streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 1318123..1318914 Bordetella bronchiseptica RB50 2662391 NP_887771.1 CDS BB1225 NC_002927.3 1318920 1320365 R amidase complement(1318920..1320365) Bordetella bronchiseptica RB50 2662291 NP_887772.1 CDS BB1226 NC_002927.3 1320371 1321657 R hypothetical protein complement(1320371..1321657) Bordetella bronchiseptica RB50 2661888 NP_887773.1 CDS BB1227 NC_002927.3 1321658 1322161 R hypothetical protein complement(1321658..1322161) Bordetella bronchiseptica RB50 2661898 NP_887774.1 CDS BB1228 NC_002927.3 1322193 1323215 R C4-dicarboxylate ABC transporter substrate-binding protein complement(1322193..1323215) Bordetella bronchiseptica RB50 2662495 NP_887775.1 CDS BB1229 NC_002927.3 1323250 1323870 R 2-hydroxychromene-2-carboxylate isomerase complement(1323250..1323870) Bordetella bronchiseptica RB50 2659242 NP_887776.1 CDS BB1230 NC_002927.3 1323921 1324340 R cyclase complement(1323921..1324340) Bordetella bronchiseptica RB50 2660146 NP_887777.1 CDS BB1231 NC_002927.3 1324542 1325069 R hypothetical protein complement(1324542..1325069) Bordetella bronchiseptica RB50 2662336 NP_887778.1 CDS BB1232 NC_002927.3 1325107 1325397 R hypothetical protein complement(1325107..1325397) Bordetella bronchiseptica RB50 2662362 NP_887779.1 CDS BB1233 NC_002927.3 1325394 1326029 R hypothetical protein complement(1325394..1326029) Bordetella bronchiseptica RB50 2662555 NP_887780.1 CDS ada NC_002927.3 1326026 1327102 R O6-methylguanine-DNA methyltransferase complement(1326026..1327102) Bordetella bronchiseptica RB50 2662556 NP_887781.1 CDS BB1235 NC_002927.3 1327161 1327820 R DNA-3-methyladenine glycosylase 1 complement(1327161..1327820) Bordetella bronchiseptica RB50 2662451 NP_887782.1 CDS BB1236 NC_002927.3 1327922 1328425 R glyxalase complement(1327922..1328425) Bordetella bronchiseptica RB50 2660274 NP_887783.1 CDS BB1237 NC_002927.3 1328593 1329750 R phosphoesterase complement(1328593..1329750) Bordetella bronchiseptica RB50 2662252 NP_887784.1 CDS cioA NC_002927.3 1329990 1331378 D cytochrome oxidase subunit I 1329990..1331378 Bordetella bronchiseptica RB50 2662529 NP_887785.1 CDS cioB NC_002927.3 1331380 1332387 D cytochrome oxidase subunit II 1331380..1332387 Bordetella bronchiseptica RB50 2662404 NP_887786.1 CDS BB1240 NC_002927.3 1332398 1332544 D hypothetical protein 1332398..1332544 Bordetella bronchiseptica RB50 2661765 NP_887787.1 CDS BB1241 NC_002927.3 1332561 1333982 D aminotransferase 1332561..1333982 Bordetella bronchiseptica RB50 2661724 NP_887788.1 CDS BB1242 NC_002927.3 1334134 1334466 D hypothetical protein 1334134..1334466 Bordetella bronchiseptica RB50 2661885 NP_887789.1 CDS ttrA NC_002927.3 1334477 1337638 R tetrathionate reductase subunit A complement(1334477..1337638) Bordetella bronchiseptica RB50 2660071 NP_887790.1 CDS ttrC NC_002927.3 1337665 1338699 R tetrathionate reductase subunit C complement(1337665..1338699) Bordetella bronchiseptica RB50 2662589 NP_887791.1 CDS ttrB NC_002927.3 1338713 1339486 R tetrathionate reductase subunit B complement(1338713..1339486) Bordetella bronchiseptica RB50 2661838 NP_887792.1 CDS BB1246 NC_002927.3 1339802 1340155 D hypothetical protein 1339802..1340155 Bordetella bronchiseptica RB50 2659259 NP_887793.1 CDS BB1247 NC_002927.3 1340178 1341104 R hydrolase complement(1340178..1341104) Bordetella bronchiseptica RB50 2661831 NP_887794.1 CDS lon NC_002927.3 1341430 1343781 R ATP-dependent protease La complement(1341430..1343781) Bordetella bronchiseptica RB50 2661626 NP_887795.1 CDS BB1249 NC_002927.3 1343778 1344185 R heat shock protein complement(1343778..1344185) Bordetella bronchiseptica RB50 2662132 NP_887796.1 CDS BB1250 NC_002927.3 1344501 1345268 R Similar to Pseudomonas aeruginosa hypothetical protein Pa0278 SWALL:Q9I6L2 (EMBL:AE004466) (250 aa) fasta scores: E(): 2.7e-37, 57.14% id in 238 aa, and to Rhizobium loti hypothetical protein Mll2193 SWALL:Q98IY4 (EMBL:AP002999) (249 aa) fasta scores: E(): 2.5e-35, 54.25% id in 247 aa; hypothetical protein complement(1344501..1345268) Bordetella bronchiseptica RB50 2660176 NP_887797.1 CDS BB1251 NC_002927.3 1345265 1345615 R hypothetical protein complement(1345265..1345615) Bordetella bronchiseptica RB50 2659315 NP_887798.1 CDS BB1252 NC_002927.3 1345731 1346636 D LysR family transcriptional regulator 1345731..1346636 Bordetella bronchiseptica RB50 2661874 NP_887799.1 CDS BB1253 NC_002927.3 1346633 1347124 R hypothetical protein complement(1346633..1347124) Bordetella bronchiseptica RB50 2662133 NP_887800.1 CDS add NC_002927.3 1347223 1348176 D catalyzes the formation of inosine from adenosine; adenosine deaminase 1347223..1348176 Bordetella bronchiseptica RB50 2659658 NP_887801.1 CDS BB1255 NC_002927.3 1348193 1349155 R hypothetical protein complement(1348193..1349155) Bordetella bronchiseptica RB50 2660266 NP_887802.1 CDS BB1256 NC_002927.3 1349186 1349815 R dimethylmenaquinone methyltransferase complement(1349186..1349815) Bordetella bronchiseptica RB50 2661809 NP_887803.1 CDS BB1257 NC_002927.3 1349821 1350540 R hypothetical protein complement(1349821..1350540) Bordetella bronchiseptica RB50 2661767 NP_887804.1 CDS BB1258 NC_002927.3 1350640 1351347 D transcriptional regulator 1350640..1351347 Bordetella bronchiseptica RB50 2659377 NP_887805.1 CDS BB1259 NC_002927.3 1351361 1352479 R 2-nitropropane dioxygenase complement(1351361..1352479) Bordetella bronchiseptica RB50 2661302 NP_887806.1 CDS BB1260 NC_002927.3 1352476 1353351 R LysR family transcriptional regulator complement(1352476..1353351) Bordetella bronchiseptica RB50 2661238 NP_887807.1 CDS BB1261 NC_002927.3 1353415 1354359 R hypothetical protein complement(1353415..1354359) Bordetella bronchiseptica RB50 2660261 NP_887808.1 CDS BB1262 NC_002927.3 1354409 1355212 R AraC family transcriptional regulator complement(1354409..1355212) Bordetella bronchiseptica RB50 2661717 NP_887809.1 CDS BB1263 NC_002927.3 1355261 1357063 R lipoprotein complement(1355261..1357063) Bordetella bronchiseptica RB50 2661734 NP_887810.1 CDS BB1264 NC_002927.3 1357312 1357536 D hypothetical protein 1357312..1357536 Bordetella bronchiseptica RB50 2661705 NP_887811.1 CDS BB1265 NC_002927.3 1357662 1358693 D hypothetical protein 1357662..1358693 Bordetella bronchiseptica RB50 2661721 NP_887812.1 CDS BB1266 NC_002927.3 1358707 1358925 R hypothetical protein complement(1358707..1358925) Bordetella bronchiseptica RB50 2660264 NP_887813.1 CDS BB1267 NC_002927.3 1359003 1359485 D hypothetical protein 1359003..1359485 Bordetella bronchiseptica RB50 2659398 NP_887814.1 CDS ilvA NC_002927.3 1359666 1361246 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 1359666..1361246 Bordetella bronchiseptica RB50 2660191 NP_887815.1 CDS BB1269 NC_002927.3 1361461 1361775 D hypothetical protein 1361461..1361775 Bordetella bronchiseptica RB50 2661682 NP_887816.1 CDS BB1270 NC_002927.3 1361798 1362433 R ortholog of Bordetella pertussis (BX470248) BP2946; ArsR family transcriptional regulator complement(1361798..1362433) Bordetella bronchiseptica RB50 2660037 NP_887817.1 CDS BB1271 NC_002927.3 1362709 1363875 D ortholog of Bordetella pertussis (BX470248) BP2945; acyl-CoA dehydrogenase 1362709..1363875 Bordetella bronchiseptica RB50 2660049 NP_887818.1 CDS BB1272 NC_002927.3 1363889 1364356 D ortholog of Bordetella pertussis (BX470248) BP2944; hypothetical protein 1363889..1364356 Bordetella bronchiseptica RB50 2661631 NP_887819.1 CDS BB1273 NC_002927.3 1364381 1365370 D ortholog of Bordetella pertussis (BX470248) BP2943; hypothetical protein 1364381..1365370 Bordetella bronchiseptica RB50 2661668 NP_887820.1 CDS BB1274 NC_002927.3 1365383 1366294 R ortholog of Bordetella pertussis (BX470248) BP2942; LysR family transcriptional regulator complement(1365383..1366294) Bordetella bronchiseptica RB50 2659352 NP_887821.1 CDS BB1275 NC_002927.3 1366420 1367541 D ortholog of Bordetella pertussis (BX470248) BP2941; racemase 1366420..1367541 Bordetella bronchiseptica RB50 2660131 NP_887822.1 CDS BB1276 NC_002927.3 1367538 1368770 R ortholog of Bordetella pertussis (BX470248) BP2940; integral membrane protein complement(1367538..1368770) Bordetella bronchiseptica RB50 2660149 NP_887823.1 CDS BB1277 NC_002927.3 1368895 1369767 D ortholog of Bordetella pertussis (BX470248) BP2939; LysR family transcriptional regulator 1368895..1369767 Bordetella bronchiseptica RB50 2659243 NP_887824.1 CDS BB1278 NC_002927.3 1369884 1370489 D ortholog of Bordetella pertussis (BX470248) BP2938; hypothetical protein 1369884..1370489 Bordetella bronchiseptica RB50 2660153 NP_887825.1 CDS BB1279 NC_002927.3 1370606 1371472 D ortholog of Bordetella pertussis (BX470248) BP2937; hypothetical protein 1370606..1371472 Bordetella bronchiseptica RB50 2660205 NP_887826.1 CDS BB1280 NC_002927.3 1371654 1372562 D ortholog of Bordetella pertussis (BX470248) BP2936; hypothetical protein 1371654..1372562 Bordetella bronchiseptica RB50 2661642 NP_887827.1 CDS BB1281 NC_002927.3 1372757 1373968 D ortholog of Bordetella pertussis (BX470248) BP2935; two component system sensor kinase 1372757..1373968 Bordetella bronchiseptica RB50 2661679 NP_887828.1 CDS BB1282 NC_002927.3 1373965 1374519 D ortholog of Bordetella pertussis (BX470248) BP2934; two component system response regulator 1373965..1374519 Bordetella bronchiseptica RB50 2661777 NP_887829.1 CDS cyoA NC_002927.3 1374728 1375642 D ortholog of Bordetella pertussis (BX470248) BP2933; ubiquinol oxidase polypeptide II 1374728..1375642 Bordetella bronchiseptica RB50 2661727 NP_887830.1 CDS cyoB NC_002927.3 1375643 1377625 D ortholog of Bordetella pertussis (BX470248) BP2932; ubiquinol oxidase subunit I 1375643..1377625 Bordetella bronchiseptica RB50 2660236 NP_887831.1 CDS cyoC NC_002927.3 1377629 1378240 D ortholog of Bordetella pertussis (BX470248) BP2931; cytochrome O ubiquinol oxidase 1377629..1378240 Bordetella bronchiseptica RB50 2660250 NP_887832.1 CDS cyoD NC_002927.3 1378240 1378587 D ortholog of Bordetella pertussis (BX470248) BP2930; cytochrome 0 ubiquinol oxidase 1378240..1378587 Bordetella bronchiseptica RB50 2661742 NP_887833.1 CDS BB1287 NC_002927.3 1378705 1379052 R ortholog of Bordetella pertussis (BX470248) BP2929; regulatory protein complement(1378705..1379052) Bordetella bronchiseptica RB50 2661928 NP_887834.1 CDS BB1288 NC_002927.3 1379192 1380622 D ortholog of Bordetella pertussis (BX470248) BP2928; transport protein 1379192..1380622 Bordetella bronchiseptica RB50 2661881 NP_887835.1 CDS BB1289 NC_002927.3 1380654 1381151 R ortholog of Bordetella pertussis (BX470248) BP2927; integral membrane protein complement(1380654..1381151) Bordetella bronchiseptica RB50 2661886 NP_887836.1 CDS BB1290 NC_002927.3 1381155 1381910 R ortholog of Bordetella pertussis (BX470248) BP2926; hypothetical protein complement(1381155..1381910) Bordetella bronchiseptica RB50 2660070 NP_887837.1 CDS BB1291 NC_002927.3 1381925 1382794 R ortholog of Bordetella pertussis (BX470248) BP2925; hypothetical protein complement(1381925..1382794) Bordetella bronchiseptica RB50 2661884 NP_887838.1 CDS BB1292 NC_002927.3 1382806 1383138 R ortholog of Bordetella pertussis (BX470248) BP2924; hypothetical protein complement(1382806..1383138) Bordetella bronchiseptica RB50 2661922 NP_887839.1 CDS BB1293 NC_002927.3 1383404 1383841 D ortholog of Bordetella pertussis (BX470248) BP2923; lipoprotein 1383404..1383841 Bordetella bronchiseptica RB50 2661887 NP_887840.1 CDS bfrG NC_002927.3 1384005 1386203 D ortholog of Bordetella pertussis (BX470248) BP2922; TonB-dependent receptor 1384005..1386203 Bordetella bronchiseptica RB50 2661890 NP_887841.1 CDS BB1295 NC_002927.3 1386215 1387684 D ortholog of Bordetella pertussis (BX470248) BP2921; hypothetical protein 1386215..1387684 Bordetella bronchiseptica RB50 2661909 NP_887842.1 CDS BB1296 NC_002927.3 1387687 1389012 R ortholog of Bordetella pertussis (BX470248) BP2920; chromate transport protein complement(1387687..1389012) Bordetella bronchiseptica RB50 2661917 NP_887843.1 CDS BB1297 NC_002927.3 1389131 1389805 D ortholog of Bordetella pertussis (BX470248) BP2919; lipoprotein 1389131..1389805 Bordetella bronchiseptica RB50 2662251 NP_887844.1 CDS BB1298 NC_002927.3 1389927 1390340 D ortholog of Bordetella pertussis (BX470248) BP2918; hypothetical protein 1389927..1390340 Bordetella bronchiseptica RB50 2662264 NP_887845.1 CDS BB1299 NC_002927.3 1390348 1390800 R ortholog of Bordetella pertussis (BX470248) BP2917; hypothetical protein complement(1390348..1390800) Bordetella bronchiseptica RB50 2662278 NP_887846.1 CDS BB1300 NC_002927.3 1390931 1391413 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 1390931..1391413 Bordetella bronchiseptica RB50 2662282 NP_887847.1 CDS BB1301 NC_002927.3 1391553 1391921 D ortholog of Bordetella pertussis (BX470248) BP2915; hypothetical protein 1391553..1391921 Bordetella bronchiseptica RB50 2662284 NP_887848.1 CDS BB1302 NC_002927.3 1391972 1392499 D ortholog of Bordetella pertussis (BX470248) BP2914; RNA polymerase sigma factor 1391972..1392499 Bordetella bronchiseptica RB50 2662300 NP_887849.1 CDS BB1303 NC_002927.3 1392496 1393299 D ortholog of Bordetella pertussis (BX470248) BP2913; hypothetical protein 1392496..1393299 Bordetella bronchiseptica RB50 2662301 NP_887850.1 CDS BB1304 NC_002927.3 1393321 1394112 R ortholog of Bordetella pertussis (BX470248) BP2725; hypothetical protein complement(1393321..1394112) Bordetella bronchiseptica RB50 2662308 NP_887851.1 CDS BB1305 NC_002927.3 1394144 1394848 R ortholog of Bordetella pertussis (BX470248) BP2726; oxidoreductase complement(1394144..1394848) Bordetella bronchiseptica RB50 2662303 NP_887852.1 CDS BB1306 NC_002927.3 1394923 1395723 R ortholog of Bordetella pertussis (BX470248) BP2727; cytochrome oxidase biogenesis protein Surf1 complement(1394923..1395723) Bordetella bronchiseptica RB50 2662318 NP_887853.1 CDS BB1307 NC_002927.3 1395720 1396127 R ortholog of Bordetella pertussis (BX470248) BP2728; cytochrome ubiquinol oxidase subunit IV complement(1395720..1396127) Bordetella bronchiseptica RB50 2662327 NP_887854.1 CDS BB1308 NC_002927.3 1396124 1396762 R ortholog of Bordetella pertussis (BX470248) BP2729; cytochrome ubiquinol oxidase subunit III complement(1396124..1396762) Bordetella bronchiseptica RB50 2662337 NP_887855.1 CDS BB1309 NC_002927.3 1396755 1398776 R ortholog of Bordetella pertussis (BX470248) BP2730; cytochrome ubiquinol oxidase subunit I complement(1396755..1398776) Bordetella bronchiseptica RB50 2662344 NP_887856.1 CDS BB1310 NC_002927.3 1398813 1399778 R ortholog of Bordetella pertussis (BX470248) BP2731; ubiquinol oxidase subunit II complement(1398813..1399778) Bordetella bronchiseptica RB50 2662354 NP_887857.1 CDS BB1311 NC_002927.3 1400015 1401346 D ortholog of Bordetella pertussis (BX470248) BP2732; membrane transport protein 1400015..1401346 Bordetella bronchiseptica RB50 2662365 NP_887858.1 CDS BB1312 NC_002927.3 1401454 1401855 D hypothetical protein 1401454..1401855 Bordetella bronchiseptica RB50 2662382 NP_887859.1 CDS BB1313 NC_002927.3 1401868 1402854 R amino-acid dehydratase complement(1401868..1402854) Bordetella bronchiseptica RB50 2662383 NP_887860.1 CDS BB1314 NC_002927.3 1402985 1403788 R hypothetical protein complement(1402985..1403788) Bordetella bronchiseptica RB50 2662392 NP_887861.1 CDS BB1315 NC_002927.3 1403900 1404325 R universal stress protein complement(1403900..1404325) Bordetella bronchiseptica RB50 2662398 NP_887862.1 CDS BB1316 NC_002927.3 1404504 1405076 D chromate transporter 1404504..1405076 Bordetella bronchiseptica RB50 2662407 NP_887863.1 CDS BB1317 NC_002927.3 1405073 1405594 D chromate transporter 1405073..1405594 Bordetella bronchiseptica RB50 2662409 NP_887864.1 CDS BB1318 NC_002927.3 1405615 1406733 R hypothetical protein complement(1405615..1406733) Bordetella bronchiseptica RB50 2662417 NP_887865.1 CDS fdsD NC_002927.3 1406870 1407118 R NAD-dependent formate dehydrogenase subunit delta complement(1406870..1407118) Bordetella bronchiseptica RB50 2662420 NP_887866.1 CDS fdhD NC_002927.3 1407130 1407960 R involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein complement(1407130..1407960) Bordetella bronchiseptica RB50 2662422 NP_887867.1 CDS fdsA NC_002927.3 1407976 1410852 R NAD-dependent formate dehydrogenase subunit alpha complement(1407976..1410852) Bordetella bronchiseptica RB50 2662437 NP_887868.1 CDS fdsB NC_002927.3 1410870 1412450 R NAD-dependent formate dehydrogenase subunit beta complement(1410870..1412450) Bordetella bronchiseptica RB50 2662469 NP_887869.1 CDS fdsG NC_002927.3 1412447 1413004 R catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma complement(1412447..1413004) Bordetella bronchiseptica RB50 2662496 NP_887870.1 CDS BB1324 NC_002927.3 1413154 1414260 D ortholog of Bordetella pertussis (BX470248) BP2705; molybdenum-binding protein 1413154..1414260 Bordetella bronchiseptica RB50 2662501 NP_887871.1 CDS moaA NC_002927.3 1414271 1415368 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 1414271..1415368 Bordetella bronchiseptica RB50 2662505 NP_887872.1 CDS moeA NC_002927.3 1415556 1416761 R ortholog of Bordetella pertussis (BX470248) BP2707; molybdopterin cofactor biosynthesis protein complement(1415556..1416761) Bordetella bronchiseptica RB50 2662519 NP_887873.1 CDS moaB NC_002927.3 1416768 1417289 R ortholog of Bordetella pertussis (BX470248) BP2708; molybdenum cofactor biosynthesis protein complement(1416768..1417289) Bordetella bronchiseptica RB50 2662537 NP_887874.1 CDS moaE NC_002927.3 1417286 1417777 R ortholog of Bordetella pertussis (BX470248) BP2709; molybdopterin converting factor complement(1417286..1417777) Bordetella bronchiseptica RB50 2662540 NP_887875.1 CDS moaD NC_002927.3 1417774 1418025 R ortholog of Bordetella pertussis (BX470248) BP2710; molybdopterin converting factor complement(1417774..1418025) Bordetella bronchiseptica RB50 2662554 NP_887876.1 CDS moaC NC_002927.3 1418006 1418491 R ortholog of Bordetella pertussis (BX470248) BP2711; molybdenum cofactor biosynthesis protein complement(1418006..1418491) Bordetella bronchiseptica RB50 2662566 NP_887877.1 CDS BB1331 NC_002927.3 1418627 1422076 D ortholog of Bordetella pertussis (BX470248) BP2712; hypothetical protein 1418627..1422076 Bordetella bronchiseptica RB50 2662573 NP_887878.1 CDS BB1332 NC_002927.3 1422073 1422978 D ortholog of Bordetella pertussis (BX470248) BP2713; hydrolase 1422073..1422978 Bordetella bronchiseptica RB50 2662575 NP_887879.1 CDS BB1333 NC_002927.3 1422988 1423419 R ortholog of Bordetella pertussis (BX470248) BP2714; lipoprotein complement(1422988..1423419) Bordetella bronchiseptica RB50 2662130 NP_887880.1 CDS BB1334 NC_002927.3 1423658 1424161 D ortholog of Bordetella pertussis (BX470248) BP2715; AhpC/TSA-family protein 1423658..1424161 Bordetella bronchiseptica RB50 2662480 NP_887881.1 CDS BB1335 NC_002927.3 1424173 1425639 D ortholog of Bordetella pertussis (BX470248) BP2716; membrane transport protein 1424173..1425639 Bordetella bronchiseptica RB50 2662860 NP_887882.1 CDS BB1336 NC_002927.3 1425753 1426628 R ortholog of Bordetella pertussis (BX470248) BP2717; hypothetical protein complement(1425753..1426628) Bordetella bronchiseptica RB50 2662912 NP_887883.1 CDS BB1337 NC_002927.3 1426625 1427632 R ortholog of Bordetella pertussis (BX470248) BP2718; biotin synthase complement(1426625..1427632) Bordetella bronchiseptica RB50 2663486 NP_887884.1 CDS BB1338 NC_002927.3 1428101 1428406 D hypothetical protein 1428101..1428406 Bordetella bronchiseptica RB50 2663334 NP_887885.1 CDS BB1339 NC_002927.3 1428470 1428775 D ortholog of Bordetella pertussis (BX470248) BP2719; hypothetical protein 1428470..1428775 Bordetella bronchiseptica RB50 2663336 NP_887886.1 CDS BB1340 NC_002927.3 1428902 1429492 D ortholog of Bordetella pertussis (BX470248) BP2720; TetR family transcriptional regulator 1428902..1429492 Bordetella bronchiseptica RB50 2663331 NP_887887.1 CDS BB1341 NC_002927.3 1430145 1431038 R carboxyvinyl-carboxyphosphonate phosphorylmutase complement(1430145..1431038) Bordetella bronchiseptica RB50 2663343 NP_887888.1 CDS acnA NC_002927.3 1431238 1433922 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1431238..1433922 Bordetella bronchiseptica RB50 2663647 NP_887889.1 CDS BB1343 NC_002927.3 1433947 1435320 D dihydroorotase-like protein 1433947..1435320 Bordetella bronchiseptica RB50 2663211 NP_887890.1 CDS BB1344 NC_002927.3 1435354 1436073 D hydrolase 1435354..1436073 Bordetella bronchiseptica RB50 2663330 NP_887891.1 CDS BB1345 NC_002927.3 1436084 1437085 D hypothetical protein 1436084..1437085 Bordetella bronchiseptica RB50 2663151 NP_887892.1 CDS BB1346 NC_002927.3 1437223 1438242 D hypothetical protein 1437223..1438242 Bordetella bronchiseptica RB50 2662768 NP_887893.1 CDS BB1347 NC_002927.3 1438261 1439646 D fumarate reductase flavoprotein subunit 1438261..1439646 Bordetella bronchiseptica RB50 2662980 NP_887894.1 CDS BB1348 NC_002927.3 1439643 1441019 D hypothetical protein 1439643..1441019 Bordetella bronchiseptica RB50 2663660 NP_887895.1 CDS BB1349 NC_002927.3 1441088 1442083 D hypothetical protein 1441088..1442083 Bordetella bronchiseptica RB50 2663373 NP_887896.1 CDS BB1350 NC_002927.3 1442114 1443499 R hypothetical protein complement(1442114..1443499) Bordetella bronchiseptica RB50 2663134 NP_887897.1 CDS BB1351 NC_002927.3 1443496 1444194 R GntR family transcriptional regulator complement(1443496..1444194) Bordetella bronchiseptica RB50 2663448 NP_887898.1 CDS BB1352 NC_002927.3 1445104 1446111 D ortholog of Bordetella pertussis (BX470248) BP1036; aldo/keto reductase 1445104..1446111 Bordetella bronchiseptica RB50 2663353 NP_887899.1 CDS lnt NC_002927.3 1446108 1447751 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(1446108..1447751) Bordetella bronchiseptica RB50 2663650 NP_887900.1 CDS corC NC_002927.3 1447748 1448650 R ortholog of Bordetella pertussis (BX470248) BP1038; magnesium and cobalt efflux protein complement(1447748..1448650) Bordetella bronchiseptica RB50 2663248 NP_887901.1 CDS BB1355 NC_002927.3 1448776 1449249 R ortholog of Bordetella pertussis (BX470248) BP1039; metalloprotease complement(1448776..1449249) Bordetella bronchiseptica RB50 2663318 NP_887902.1 CDS BB1356 NC_002927.3 1449239 1450261 R ortholog of Bordetella pertussis (BX470248) BP1040; PhoH-like protein complement(1449239..1450261) Bordetella bronchiseptica RB50 2663315 NP_887903.1 CDS BB1357 NC_002927.3 1450258 1451685 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1450258..1451685) Bordetella bronchiseptica RB50 2663852 NP_887904.1 CDS BB1358 NC_002927.3 1451842 1452570 D ortholog of Bordetella pertussis (BX470248) BP1042; hypothetical protein 1451842..1452570 Bordetella bronchiseptica RB50 2663167 NP_887905.1 CDS secF NC_002927.3 1452733 1453668 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(1452733..1453668) Bordetella bronchiseptica RB50 2662887 NP_887906.1 CDS secD NC_002927.3 1453718 1455598 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(1453718..1455598) Bordetella bronchiseptica RB50 2663662 NP_887907.1 CDS BB1361 NC_002927.3 1455665 1456009 R ortholog of Bordetella pertussis (BX470248) BP1047; secreted protein complement(1455665..1456009) Bordetella bronchiseptica RB50 2663063 NP_887908.1 CDS tgt NC_002927.3 1456158 1457294 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1456158..1457294) Bordetella bronchiseptica RB50 2663862 NP_887909.1 CDS queA NC_002927.3 1457291 1458364 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(1457291..1458364) Bordetella bronchiseptica RB50 2663589 NP_887910.1 CDS BB1364 NC_002927.3 1458522 1459958 D ortholog of Bordetella pertussis (BX470248) BP1051; D-alanyl-D-alanine carboxypeptidase 1458522..1459958 Bordetella bronchiseptica RB50 2662955 NP_887911.1 CDS upp NC_002927.3 1460048 1460689 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1460048..1460689 Bordetella bronchiseptica RB50 2663024 NP_887912.1 CDS prn NC_002927.3 1461346 1464096 D ortholog of Bordetella pertussis (BX470248) BP1054; pertactin precursor 1461346..1464096 Bordetella bronchiseptica RB50 2663000 NP_887913.1 CDS cysG NC_002927.3 1464164 1465585 R ortholog of Bordetella pertussis (BX470248) BP1055; siroheme synthase complement(1464164..1465585) Bordetella bronchiseptica RB50 2663154 NP_887914.1 CDS BB1368 NC_002927.3 1465850 1466566 D ortholog of Bordetella pertussis (BX470248) BP1056; hypothetical protein 1465850..1466566 Bordetella bronchiseptica RB50 2663709 NP_887915.1 CDS BB1369 NC_002927.3 1466651 1466968 D ortholog of Bordetella pertussis (BX470248) BP1057; hypothetical protein 1466651..1466968 Bordetella bronchiseptica RB50 2663115 NP_887916.1 CDS BB1370 NC_002927.3 1467009 1467422 D ortholog of Bordetella pertussis (BX470248) BP1058; hypothetical protein 1467009..1467422 Bordetella bronchiseptica RB50 2663081 NP_887917.1 CDS BB1371 NC_002927.3 1467424 1467783 D ortholog of Bordetella pertussis (BX470248) BP1059; hypothetical protein 1467424..1467783 Bordetella bronchiseptica RB50 2662956 NP_887918.1 CDS ubiD NC_002927.3 1467826 1469370 R ortholog of Bordetella pertussis (BX470248) BP1060; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(1467826..1469370) Bordetella bronchiseptica RB50 2662954 NP_887919.1 CDS BB1373 NC_002927.3 1469454 1470284 D ortholog of Bordetella pertussis (BX470248) BP1061; transglycosylase 1469454..1470284 Bordetella bronchiseptica RB50 2662794 NP_887920.1 CDS BB1374 NC_002927.3 1470319 1471473 R ortholog of Bordetella pertussis (BX470248) BP1062; aminotransferase complement(1470319..1471473) Bordetella bronchiseptica RB50 2663157 NP_887921.1 CDS BB1375 NC_002927.3 1471648 1472388 D ortholog of Bordetella pertussis (BX470248) BP1063; hypothetical protein 1471648..1472388 Bordetella bronchiseptica RB50 2663533 NP_887922.1 CDS maeB NC_002927.3 1472406 1474793 D NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate; malic enzyme 1472406..1474793 Bordetella bronchiseptica RB50 2663534 NP_887923.1 CDS BB1377 NC_002927.3 1474843 1476006 D ortholog of Bordetella pertussis (BX470248) BP1065; hypothetical protein 1474843..1476006 Bordetella bronchiseptica RB50 2663310 NP_887924.1 CDS BB1378 NC_002927.3 1476003 1476467 D ortholog of Bordetella pertussis (BX470248) BP1066; hypothetical protein 1476003..1476467 Bordetella bronchiseptica RB50 2663103 NP_887925.1 CDS BB1379 NC_002927.3 1476494 1477234 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1476494..1477234) Bordetella bronchiseptica RB50 2662799 NP_887926.1 CDS tktA NC_002927.3 1477429 1479465 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1477429..1479465 Bordetella bronchiseptica RB50 2662798 NP_887927.1 CDS gap NC_002927.3 1479483 1480493 D ortholog of Bordetella pertussis (BX470248) BP1000; glyceraldehyde-3-phosphate dehydrogenase 1479483..1480493 Bordetella bronchiseptica RB50 2663383 NP_887928.1 CDS pgk NC_002927.3 1480611 1481804 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1480611..1481804 Bordetella bronchiseptica RB50 2662959 NP_887929.1 CDS fabI NC_002927.3 1481834 1482607 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase complement(1481834..1482607) Bordetella bronchiseptica RB50 2662932 NP_887930.1 CDS ackA NC_002927.3 1482604 1483794 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1482604..1483794) Bordetella bronchiseptica RB50 2663348 NP_887931.1 CDS BB1385 NC_002927.3 1483820 1484758 R catalyzes the formation of acetyl phosphate from acetyl-CoA and phosphate; can also act with other short-chain acyl-CoAs; phosphate acetyltransferase complement(1483820..1484758) Bordetella bronchiseptica RB50 2663293 NP_887932.1 CDS BB1386 NC_002927.3 1484755 1487085 R ortholog of Bordetella pertussis (BX470248) BP1005; hypothetical protein complement(1484755..1487085) Bordetella bronchiseptica RB50 2662964 NP_887933.1 CDS BB1387 NC_002927.3 1487240 1487947 R ortholog of Bordetella pertussis (BX470248) BP1006; glutathione S-transferase complement(1487240..1487947) Bordetella bronchiseptica RB50 2663352 NP_887934.1 CDS BB1388 NC_002927.3 1487985 1488314 R ortholog of Bordetella pertussis (BX470248) BP1008; hypothetical protein complement(1487985..1488314) Bordetella bronchiseptica RB50 2663220 NP_887935.1 CDS BB1389 NC_002927.3 1488346 1488894 R ortholog of Bordetella pertussis (BX470248) BP1009; hypothetical protein complement(1488346..1488894) Bordetella bronchiseptica RB50 2663222 NP_887936.1 CDS BB1390 NC_002927.3 1488913 1489398 R ortholog of Bordetella pertussis (BX470248) BP1010; acetyltransferase complement(1488913..1489398) Bordetella bronchiseptica RB50 2663687 NP_887937.1 CDS cbpA NC_002927.3 1489711 1490514 D ortholog of Bordetella pertussis (BX470248) BP1011; curved DNA-binding protein 1489711..1490514 Bordetella bronchiseptica RB50 2663201 NP_887938.1 CDS BB1392 NC_002927.3 1490517 1490834 D ortholog of Bordetella pertussis (BX470248) BP1012; hypothetical protein 1490517..1490834 Bordetella bronchiseptica RB50 2663128 NP_887939.1 CDS BB1393 NC_002927.3 1490880 1491593 D ortholog of Bordetella pertussis (BX470248) BP1013; hypothetical protein 1490880..1491593 Bordetella bronchiseptica RB50 2662894 NP_887940.1 CDS BB1394 NC_002927.3 1491590 1491934 D ortholog of Bordetella pertussis (BX470248) BP1013; hypothetical protein 1491590..1491934 Bordetella bronchiseptica RB50 2663417 NP_887941.1 CDS pitA NC_002927.3 1491955 1493430 R ortholog of Bordetella pertussis (BX470248) BP1014; phosphate transporter complement(1491955..1493430) Bordetella bronchiseptica RB50 2663349 NP_887942.1 CDS mogA NC_002927.3 1493615 1494265 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 1493615..1494265 Bordetella bronchiseptica RB50 2662810 NP_887943.1 CDS BB1397 NC_002927.3 1494319 1494654 D ortholog of Bordetella pertussis (BX470248) BP1016; hypothetical protein 1494319..1494654 Bordetella bronchiseptica RB50 2662982 NP_887944.1 CDS BB1398 NC_002927.3 1494651 1495511 D ortholog of Bordetella pertussis (BX470248) BP1017; peptidase 1494651..1495511 Bordetella bronchiseptica RB50 2663011 NP_887945.1 CDS BB1399 NC_002927.3 1495528 1495809 R ortholog of Bordetella pertussis (BX470248) BP1018; hypothetical protein complement(1495528..1495809) Bordetella bronchiseptica RB50 2663815 NP_887946.1 CDS infA NC_002927.3 1495883 1496146 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1495883..1496146) Bordetella bronchiseptica RB50 2663845 NP_887947.1 CDS BB1401 NC_002927.3 1496509 1496913 R ortholog of Bordetella pertussis (BX470248) BP1512; hypothetical protein complement(1496509..1496913) Bordetella bronchiseptica RB50 2662814 NP_887948.1 CDS BB1402 NC_002927.3 1496987 1498186 R Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen, nitrate, sulphate or fumarate; formate dehydrogenase complement(1496987..1498186) Bordetella bronchiseptica RB50 2662818 NP_887949.1 CDS BB1403 NC_002927.3 1498220 1498546 R ortholog of Bordetella pertussis (BX470248) BP1514; hypothetical protein complement(1498220..1498546) Bordetella bronchiseptica RB50 2662829 NP_887950.1 CDS BB1404 NC_002927.3 1498569 1499084 R ortholog of Bordetella pertussis (BX470248) BP1515; transporter protein complement(1498569..1499084) Bordetella bronchiseptica RB50 2663393 NP_887951.1 CDS fmdA NC_002927.3 1499143 1500369 R ortholog of Bordetella pertussis (BX470248) BP1516; formamidase complement(1499143..1500369) Bordetella bronchiseptica RB50 2662790 NP_887952.1 CDS BB1406 NC_002927.3 1500547 1501677 R ortholog of Bordetella pertussis (BX470248) BP1517; LuxR family transcriptional regulator complement(1500547..1501677) Bordetella bronchiseptica RB50 2663524 NP_887953.1 CDS BB1407 NC_002927.3 1501912 1502454 D ortholog of Bordetella pertussis (BX470248) BP1518; hypothetical protein 1501912..1502454 Bordetella bronchiseptica RB50 2663478 NP_887954.1 CDS fba NC_002927.3 1502630 1503694 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 1502630..1503694 Bordetella bronchiseptica RB50 2662805 NP_887955.1 CDS BB1409 NC_002927.3 1503780 1504226 R ortholog of Bordetella pertussis (BX470248) BP1520; hypothetical protein complement(1503780..1504226) Bordetella bronchiseptica RB50 2663001 NP_887956.1 CDS hemH NC_002927.3 1504452 1505333 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1504452..1505333 Bordetella bronchiseptica RB50 2663002 NP_887957.1 CDS BB1411 NC_002927.3 1505616 1505912 D ortholog of Bordetella pertussis (BX470248) BP1522; hypothetical protein 1505616..1505912 Bordetella bronchiseptica RB50 2663428 NP_887958.1 CDS BB1412 NC_002927.3 1505915 1506316 D ortholog of Bordetella pertussis (BX470248) BP1523; DNA-binding protein 1505915..1506316 Bordetella bronchiseptica RB50 2663464 NP_887959.1 CDS BB1413 NC_002927.3 1506336 1506572 D ortholog of Bordetella pertussis (BX470248) BP1524; hypothetical protein 1506336..1506572 Bordetella bronchiseptica RB50 2662953 NP_887960.1 CDS BB1414 NC_002927.3 1506580 1507059 D ortholog of Bordetella pertussis (BX470248) BP1525; hypothetical protein 1506580..1507059 Bordetella bronchiseptica RB50 2662815 NP_887961.1 CDS purE NC_002927.3 1507243 1507722 D ortholog of Bordetella pertussis (BX470248) BP1526; phosphoribosylaminoimidazole carboxylase catalytic subunit 1507243..1507722 Bordetella bronchiseptica RB50 2663322 NP_887962.1 CDS purK NC_002927.3 1507725 1508915 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1507725..1508915 Bordetella bronchiseptica RB50 2663460 NP_887963.1 CDS BB1417 NC_002927.3 1508935 1509972 D ortholog of Bordetella pertussis (BX470248) BP1528; hypothetical protein 1508935..1509972 Bordetella bronchiseptica RB50 2662958 NP_887964.1 CDS BB1418 NC_002927.3 1510109 1511131 D ortholog of Bordetella pertussis (BX470248) BP1529; amino acid ABC transporter substrate-binding protein 1510109..1511131 Bordetella bronchiseptica RB50 2663258 NP_887965.1 CDS BB1419 NC_002927.3 1511223 1512059 D ortholog of Bordetella pertussis (BX470248) BP1530; IclR family transcriptional regulator 1511223..1512059 Bordetella bronchiseptica RB50 2662986 NP_887966.1 CDS BB1420 NC_002927.3 1512252 1513157 D ortholog of Bordetella pertussis (BX470248) BP1531; arginase 1512252..1513157 Bordetella bronchiseptica RB50 2663193 NP_887967.1 CDS BB1421 NC_002927.3 1513184 1513975 D ortholog of Bordetella pertussis (BX470248) BP1532; amino acid ABC transporter substrate-binding protein 1513184..1513975 Bordetella bronchiseptica RB50 2663253 NP_887968.1 CDS BB1422 NC_002927.3 1513998 1514690 D ortholog of Bordetella pertussis (BX470248) BP1533; amino acid ABC transporter permease 1513998..1514690 Bordetella bronchiseptica RB50 2663877 NP_887969.1 CDS BB1423 NC_002927.3 1514712 1515464 D ortholog of Bordetella pertussis (BX470248) BP1534; amino acid ABC transporter ATP-binding protein 1514712..1515464 Bordetella bronchiseptica RB50 2662997 NP_887970.1 CDS BB1424 NC_002927.3 1515593 1517152 D thiamine-pyrophosphate requiring enzyme; hypothetical protein 1515593..1517152 Bordetella bronchiseptica RB50 2663629 NP_887971.1 CDS BB1425 NC_002927.3 1517184 1517729 D ortholog of Bordetella pertussis (BX470248) BP1536; hypothetical protein 1517184..1517729 Bordetella bronchiseptica RB50 2663880 NP_887972.1 CDS gcdH NC_002927.3 1517869 1519125 R ortholog of Bordetella pertussis (BX470248) BP1537; glutaryl-CoA dehydrogenase complement(1517869..1519125) Bordetella bronchiseptica RB50 2663174 NP_887973.1 CDS ilvG NC_002927.3 1519142 1520836 R catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; thiamine pyrophosphate protein complement(1519142..1520836) Bordetella bronchiseptica RB50 2663143 NP_887974.1 CDS BB1428 NC_002927.3 1520994 1521881 D ortholog of Bordetella pertussis (BX470248) BP1539; LysR family transcriptional regulator 1520994..1521881 Bordetella bronchiseptica RB50 2662968 NP_887975.1 CDS xerD NC_002927.3 1521919 1522851 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 1521919..1522851 Bordetella bronchiseptica RB50 2663346 NP_887976.1 CDS BB1430 NC_002927.3 1522865 1523353 D ortholog of Bordetella pertussis (BX470248) BP1541; hypothetical protein 1522865..1523353 Bordetella bronchiseptica RB50 2662931 NP_887977.1 CDS BB1431 NC_002927.3 1523422 1524051 D ortholog of Bordetella pertussis (BX470248) BP1542; hypothetical protein 1523422..1524051 Bordetella bronchiseptica RB50 2663217 NP_887978.1 CDS BB1432 NC_002927.3 1524113 1524514 D ortholog of Bordetella pertussis (BX470248) BP1543; hypothetical protein 1524113..1524514 Bordetella bronchiseptica RB50 2663456 NP_887979.1 CDS pbpG NC_002927.3 1524521 1525300 R ortholog of Bordetella pertussis (BX470248) BP1545; D-alanyl-D-alanine carboxypeptidase complement(1524521..1525300) Bordetella bronchiseptica RB50 2662994 NP_887980.1 CDS BB1434 NC_002927.3 1525299 1525559 D ortholog of Bordetella pertussis (BX470248) BP1545A; hypothetical protein 1525299..1525559 Bordetella bronchiseptica RB50 2663477 NP_887981.1 CDS BB1435 NC_002927.3 1526320 1527522 D ortholog of Bordetella pertussis (BX470248) BP1546; hypothetical protein 1526320..1527522 Bordetella bronchiseptica RB50 2663395 NP_887982.1 CDS BB1436 NC_002927.3 1527726 1530386 D ortholog of Bordetella pertussis (BX470248) BP1547; hypothetical protein 1527726..1530386 Bordetella bronchiseptica RB50 2663638 NP_887983.1 CDS BB1437 NC_002927.3 1530399 1533803 D ortholog of Bordetella pertussis (BX470248) BP1548; nuclease/helicase 1530399..1533803 Bordetella bronchiseptica RB50 2662751 NP_887984.2 CDS dnaX NC_002927.3 1534507 1536603 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1534507..1536603 Bordetella bronchiseptica RB50 2662830 NP_887985.1 CDS BB1439 NC_002927.3 1536650 1536976 D ortholog of Bordetella pertussis (BX470248) BP1550; hypothetical protein 1536650..1536976 Bordetella bronchiseptica RB50 2662831 NP_887986.1 CDS recR NC_002927.3 1537026 1537634 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1537026..1537634 Bordetella bronchiseptica RB50 2663010 NP_887987.1 CDS BB1441 NC_002927.3 1537709 1538959 D hypothetical protein 1537709..1538959 Bordetella bronchiseptica RB50 2662862 NP_887988.1 CDS BB1442 NC_002927.3 1539065 1540105 D hypothetical protein 1539065..1540105 Bordetella bronchiseptica RB50 2663375 NP_887989.1 CDS BB1443 NC_002927.3 1540098 1540907 D ABC transporter ATP-binding protein 1540098..1540907 Bordetella bronchiseptica RB50 2663257 NP_887990.1 CDS BB1444 NC_002927.3 1540911 1541705 D transmembrane permease ABC transporter protein 1540911..1541705 Bordetella bronchiseptica RB50 2662950 NP_887991.2 CDS talB NC_002927.3 1541747 1542709 R Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B complement(1541747..1542709) Bordetella bronchiseptica RB50 2663299 NP_887992.1 CDS carA NC_002927.3 1543047 1544090 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1543047..1544090 Bordetella bronchiseptica RB50 2663627 NP_887993.1 CDS carB NC_002927.3 1544101 1547343 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1544101..1547343 Bordetella bronchiseptica RB50 2663320 NP_887994.1 CDS BB1448 NC_002927.3 1547495 1548259 D ortholog of Bordetella pertussis (BX470248) BP1454; short chain dehydrogenase 1547495..1548259 Bordetella bronchiseptica RB50 2662809 NP_887995.1 CDS gpmB NC_002927.3 1548440 1549084 R ortholog of Bordetella pertussis (BX470248) BP1455; phosphoglycerate mutase complement(1548440..1549084) Bordetella bronchiseptica RB50 2663379 NP_887996.1 CDS BB1450 NC_002927.3 1549095 1549994 R ortholog of Bordetella pertussis (BX470248) BP1456; LysR family transcriptional regulator complement(1549095..1549994) Bordetella bronchiseptica RB50 2662972 NP_887997.1 CDS BB1451 NC_002927.3 1550042 1551127 R ortholog of Bordetella pertussis (BX470248) BP1457; ABC transporter ATP-binding protein complement(1550042..1551127) Bordetella bronchiseptica RB50 2662870 NP_887998.1 CDS BB1452 NC_002927.3 1551124 1552833 R ortholog of Bordetella pertussis (BX470248) BP1458; ABC transporter permease complement(1551124..1552833) Bordetella bronchiseptica RB50 2663485 NP_887999.1 CDS BB1453 NC_002927.3 1552910 1554232 R ortholog of Bordetella pertussis (BX470248) BP2271; regulatory lipoprotein complement(1552910..1554232) Bordetella bronchiseptica RB50 2663124 NP_888000.1 CDS BB1455 NC_002927.3 1554784 1556097 D ortholog of Bordetella pertussis (BX470248) BP2269; xanthine/uracil family permease 1554784..1556097 Bordetella bronchiseptica RB50 2663564 NP_888001.1 CDS BB1456 NC_002927.3 1556128 1557759 R ortholog of Bordetella pertussis (BX470248) BP2268; methyl-accepting chemotaxis protein complement(1556128..1557759) Bordetella bronchiseptica RB50 2663289 NP_888002.1 CDS greA NC_002927.3 1558389 1558865 D ortholog of Bordetella pertussis (BX470248) BP2267; transcription elongation factor 1558389..1558865 Bordetella bronchiseptica RB50 2663605 NP_888003.1 CDS BB1458 NC_002927.3 1559220 1559822 R ortholog of Bordetella pertussis (BX470248) BP1079; hypothetical protein complement(1559220..1559822) Bordetella bronchiseptica RB50 2663654 NP_888004.1 CDS rrmJ NC_002927.3 1559841 1560473 D ortholog of Bordetella pertussis (BX470248) BP1078; ribosomal RNA large subunit methyltransferase j 1559841..1560473 Bordetella bronchiseptica RB50 2663275 NP_888005.1 CDS ftsH NC_002927.3 1560711 1562597 D ortholog of Bordetella pertussis (BX470248) BP1077; cell division protein 1560711..1562597 Bordetella bronchiseptica RB50 2662820 NP_888006.1 CDS folP NC_002927.3 1562616 1563458 D ortholog of Bordetella pertussis (BX470248) BP1076; dihydropteroate synthase 1562616..1563458 Bordetella bronchiseptica RB50 2662898 NP_888007.1 CDS glmM NC_002927.3 1563455 1564813 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1563455..1564813 Bordetella bronchiseptica RB50 2663878 NP_888008.1 CDS BB1463 NC_002927.3 1565034 1565828 D ortholog of Bordetella pertussis (BX470248) BP1074; hypothetical protein 1565034..1565828 Bordetella bronchiseptica RB50 2663582 NP_888009.1 CDS ppx NC_002927.3 1566134 1567627 R ortholog of Bordetella pertussis (BX470248) BP1073; exopolyphosphatase complement(1566134..1567627) Bordetella bronchiseptica RB50 2662872 NP_888010.1 CDS ppk NC_002927.3 1567863 1569944 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 1567863..1569944 Bordetella bronchiseptica RB50 2662961 NP_888011.1 CDS pstS NC_002927.3 1570139 1571179 D ortholog of Bordetella pertussis (BX470248) BP1071; phosphate ABC transporter substrate-binding portein 1570139..1571179 Bordetella bronchiseptica RB50 2662979 NP_888012.1 CDS pstC NC_002927.3 1571314 1572330 D ortholog of Bordetella pertussis (BX470248) BP1070; phosphate ABC transporter permease 1571314..1572330 Bordetella bronchiseptica RB50 2663135 NP_888013.1 CDS pstA NC_002927.3 1572352 1573209 D ortholog of Bordetella pertussis (BX470248) BP1069; phosphate ABC transporter permease 1572352..1573209 Bordetella bronchiseptica RB50 2662943 NP_888014.1 CDS pstB NC_002927.3 1573206 1574030 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1573206..1574030 Bordetella bronchiseptica RB50 2663444 NP_888015.1 CDS BB1470 NC_002927.3 1574264 1575265 R Similar to Pseudomonas aeruginosa hypothetical protein Pa1166 SWALL:Q9I4H1 (EMBL:AE004547) (262 aa) fasta scores: E(): 0.00026, 26.66% id in 240 aa, and to Methanosarcina acetivorans predicted protein ma0077 SWALL:Q8TUJ0 (EMBL:AE010664) (288 aa) fasta scores: E(): 0.0024, 28.37% id in 215 aa; hypothetical protein complement(1574264..1575265) Bordetella bronchiseptica RB50 2662873 NP_888016.1 CDS BB1471 NC_002927.3 1575274 1576242 R Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 6.2e-30, 35.43% id in 302 aa, and to Rhizobium meliloti hypothetical protein ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 5.6e-29, 33.33% id in 324 aa; hypothetical protein complement(1575274..1576242) Bordetella bronchiseptica RB50 2663283 NP_888017.1 CDS BB1472 NC_002927.3 1576283 1576630 R Similar to Pseudomonas aeruginosa hypothetical protein Pa1917 SWALL:Q9I2I7 (EMBL:AE004617) (115 aa) fasta scores: E(): 7.9e-16, 44.82% id in 116 aa, and to Rhizobium meliloti hypothetical protein ra1014 or sma1840 SWALL:Q92Y73 (EMBL:AE007287) (117 aa) fasta scores: E(): 5.4e-08, 39.08% id in 87 aa; hypothetical protein complement(1576283..1576630) Bordetella bronchiseptica RB50 2663182 NP_888018.1 CDS BB1473 NC_002927.3 1576648 1578006 R Similar to Escherichia coli probable oxidoreductase OrdL or b1301 SWALL:ORDL_ECOLI (SWALL:P37906) (426 aa) fasta scores: E(): 2.8e-23, 30.66% id in 437 aa, and to Agrobacterium tumefaciens oxidoreductase OrdL or atu3404 or agr_l_2836 SWALL:Q8UAH0 (EMBL:AE009271) (424 aa) fasta scores: E(): 5.8e-34, 32.42% id in 404 aa; oxidoreductase complement(1576648..1578006) Bordetella bronchiseptica RB50 2663686 NP_888019.1 CDS BB1474 NC_002927.3 1578153 1578671 D Similar to Brucella melitensis transcriptional regulator, MerR family bmeii0372 SWALL:Q8YD05 (EMBL:AE009674) (182 aa) fasta scores: E(): 1.2e-22, 41.37% id in 174 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa5301 SWALL:Q9HTQ3 (EMBL:AE004943) (182 aa) fasta scores: E(): 4.6e-22, 39.2% id in 176 aa; DNA-binding protein 1578153..1578671 Bordetella bronchiseptica RB50 2663184 NP_888020.1 CDS BB1475 NC_002927.3 1579051 1579749 D hypothetical protein 1579051..1579749 Bordetella bronchiseptica RB50 2662769 NP_888021.1 CDS BB1476 NC_002927.3 1579753 1581522 D gluconate dehydrogenase 1579753..1581522 Bordetella bronchiseptica RB50 2663068 NP_888022.1 CDS BB1477 NC_002927.3 1581533 1582888 D cytochrome C precursor 1581533..1582888 Bordetella bronchiseptica RB50 2663839 NP_888023.1 CDS BB1478 NC_002927.3 1582900 1583640 R carbonic anhydrase precursor complement(1582900..1583640) Bordetella bronchiseptica RB50 2663601 NP_888024.1 CDS BB1479 NC_002927.3 1583738 1584685 R regulatory protein complement(1583738..1584685) Bordetella bronchiseptica RB50 2663583 NP_888025.1 CDS gbd NC_002927.3 1584851 1585990 D NAD-dependent 4-hydroxybutyrate dehydrogenase 1584851..1585990 Bordetella bronchiseptica RB50 2663761 NP_888026.1 CDS BB1481 NC_002927.3 1586033 1587613 D ketoglutarate semialdehyde dehydrogenase 1586033..1587613 Bordetella bronchiseptica RB50 2663769 NP_888027.1 CDS BB1482 NC_002927.3 1587712 1588170 D hypothetical protein 1587712..1588170 Bordetella bronchiseptica RB50 2663819 NP_888028.1 CDS BB1483 NC_002927.3 1588244 1588987 D hypothetical protein 1588244..1588987 Bordetella bronchiseptica RB50 2663791 NP_888029.1 CDS BB1484 NC_002927.3 1589263 1590114 D branched chain amino acid ABC transporter ATP-binding protein 1589263..1590114 Bordetella bronchiseptica RB50 2663804 NP_888030.1 CDS BB1485 NC_002927.3 1590107 1590811 D branched chain amino acid ABC transporter ATP-binding protein 1590107..1590811 Bordetella bronchiseptica RB50 2663007 NP_888031.1 CDS BB1486 NC_002927.3 1590815 1591702 D high-affinity branched-chain amino acid transporter membrane protein 1590815..1591702 Bordetella bronchiseptica RB50 2663557 NP_888032.1 CDS BB1487 NC_002927.3 1591710 1592723 D branched chain amino acid ABC transporter 1591710..1592723 Bordetella bronchiseptica RB50 2663496 NP_888033.1 CDS BB1488 NC_002927.3 1592807 1594033 D branched chain amino-acid ABC transporter substrate-binding protein 1592807..1594033 Bordetella bronchiseptica RB50 2662985 NP_888034.1 CDS BB1489 NC_002927.3 1594058 1594780 R high-affinity branched-chain amino acid transporter ATP-binding protein complement(1594058..1594780) Bordetella bronchiseptica RB50 2662976 NP_888035.1 CDS BB1490 NC_002927.3 1594777 1595511 R branched chain amino acid ABC transporter ATP-binding protein complement(1594777..1595511) Bordetella bronchiseptica RB50 2663298 NP_888036.1 CDS BB1491 NC_002927.3 1595508 1596455 R high-affinity branched-chain amino acid transporter membrane protein complement(1595508..1596455) Bordetella bronchiseptica RB50 2663645 NP_888037.1 CDS BB1492 NC_002927.3 1596452 1597315 R high-affinity branched-chain amino acid transporter membrane protein complement(1596452..1597315) Bordetella bronchiseptica RB50 2663431 NP_888038.1 CDS BB1493 NC_002927.3 1597343 1598551 R branched chain amino-acid ABC transporter substrate-binding protein complement(1597343..1598551) Bordetella bronchiseptica RB50 2663875 NP_888039.1 CDS BB1494 NC_002927.3 1598775 1600154 D hypothetical protein 1598775..1600154 Bordetella bronchiseptica RB50 2663611 NP_888040.1 CDS BB1495 NC_002927.3 1600151 1600936 D transcriptional regulator 1600151..1600936 Bordetella bronchiseptica RB50 2663467 NP_888041.1 CDS BB1496 NC_002927.3 1601068 1601817 D short chain dehydrogenase 1601068..1601817 Bordetella bronchiseptica RB50 2663652 NP_888042.1 CDS BB1497 NC_002927.3 1601884 1602858 D hypothetical protein 1601884..1602858 Bordetella bronchiseptica RB50 2663544 NP_888043.1 CDS BB1498 NC_002927.3 1602910 1603758 D hydrolase 1602910..1603758 Bordetella bronchiseptica RB50 2662689 NP_888044.1 CDS BB1499 NC_002927.3 1603775 1605289 D monoxygenase 1603775..1605289 Bordetella bronchiseptica RB50 2663378 NP_888045.1 CDS BB1500 NC_002927.3 1605286 1606194 D 3-hydroxybutyryl-CoA dehydrogenase 1605286..1606194 Bordetella bronchiseptica RB50 2663642 NP_888046.1 CDS BB1501 NC_002927.3 1606631 1607398 D enoyl-CoA hydratase 1606631..1607398 Bordetella bronchiseptica RB50 2662765 NP_888047.1 CDS BB1502 NC_002927.3 1607436 1608638 D L-carnitine dehydrogenase 1607436..1608638 Bordetella bronchiseptica RB50 2663618 NP_888048.1 CDS BB1503 NC_002927.3 1608725 1609963 D ABC transporter substrate-binding protein 1608725..1609963 Bordetella bronchiseptica RB50 2662752 NP_888049.1 CDS BB1504 NC_002927.3 1610001 1610876 D ABC transporter permease 1610001..1610876 Bordetella bronchiseptica RB50 2662747 NP_888050.1 CDS BB1505 NC_002927.3 1610877 1611776 D ABC transporter permease 1610877..1611776 Bordetella bronchiseptica RB50 2663044 NP_888051.1 CDS BB1506 NC_002927.3 1611779 1612540 D ABC transporter ATP-binding protein 1611779..1612540 Bordetella bronchiseptica RB50 2663572 NP_888052.1 CDS BB1507 NC_002927.3 1612537 1613262 D ABC transporter ATP-binding protein 1612537..1613262 Bordetella bronchiseptica RB50 2662691 NP_888053.1 CDS BB1508 NC_002927.3 1613259 1614641 D amidase 1613259..1614641 Bordetella bronchiseptica RB50 2662907 NP_888054.1 CDS BB1509 NC_002927.3 1614721 1616115 D hypothetical protein 1614721..1616115 Bordetella bronchiseptica RB50 2663651 NP_888055.1 CDS BB1510 NC_002927.3 1616180 1616893 D GntR family transcriptional regulator 1616180..1616893 Bordetella bronchiseptica RB50 2662915 NP_888056.1 CDS BB1511 NC_002927.3 1616937 1617245 R hypothetical protein complement(1616937..1617245) Bordetella bronchiseptica RB50 2663281 NP_888057.1 CDS BB1512 NC_002927.3 1617265 1618044 R Similar to Gluconobacter oxydans gluconate 5-dehydrogenase Gno SWALL:GNO_GLUOX (SWALL:P50199) (256 aa) fasta scores: E(): 3.4e-28, 38.61% id in 259 aa, and to Ralstonia solanacearum probable gluconate 5-dehydrogenase oxidoreductase IdnO or rsp0947 or rs05386 SWALL:Q8XRB1 (EMBL:AL646081) (258 aa) fasta scores: E(): 1.1e-30, 39.6% id in 250 aa; short chain dehydrogenase complement(1617265..1618044) Bordetella bronchiseptica RB50 2663620 NP_888058.1 CDS BB1513 NC_002927.3 1618064 1618846 R Similar to Acinetobacter sp. ADP1 DcaC SWALL:Q937T4 (EMBL:L05770) (253 aa) fasta scores: E(): 5.4e-33, 43.37% id in 249 aa, and to Rhizobium loti probable short chain dehydrogenase mll1036 SWALL:Q98LG1 (EMBL:AP002996) (268 aa) fasta scores: E(): 2.8e-39, 47.01% id in 251 aa; short chain dehydrogenase complement(1618064..1618846) Bordetella bronchiseptica RB50 2663474 NP_888059.1 CDS BB1514 NC_002927.3 1618881 1620161 R ABC transporter complement(1618881..1620161) Bordetella bronchiseptica RB50 2662840 NP_888060.1 CDS BB1515 NC_002927.3 1620161 1620673 R ABC transporter complement(1620161..1620673) Bordetella bronchiseptica RB50 2663446 NP_888061.1 CDS BB1516 NC_002927.3 1620752 1621813 R ABC transporter substrate-binding protein complement(1620752..1621813) Bordetella bronchiseptica RB50 2663254 NP_888062.1 CDS BB1517 NC_002927.3 1621810 1622205 R hypothetical protein complement(1621810..1622205) Bordetella bronchiseptica RB50 2663277 NP_888063.1 CDS BB1518 NC_002927.3 1622246 1623160 R hydrolase complement(1622246..1623160) Bordetella bronchiseptica RB50 2663661 NP_888064.1 CDS BB1519 NC_002927.3 1623207 1623878 R GntR family transcriptional regulator complement(1623207..1623878) Bordetella bronchiseptica RB50 2663117 NP_888065.1 CDS BB1520 NC_002927.3 1624028 1624519 R AsnC family transcriptional regulator complement(1624028..1624519) Bordetella bronchiseptica RB50 2663234 NP_888066.1 CDS BB1521 NC_002927.3 1624754 1625956 R catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase complement(1624754..1625956) Bordetella bronchiseptica RB50 2662971 NP_888067.1 CDS BB1522 NC_002927.3 1626329 1627513 D peptidase 1626329..1627513 Bordetella bronchiseptica RB50 2663100 NP_888068.1 CDS BB1523 NC_002927.3 1627510 1628520 D ABC transporter substrate-binding protein 1627510..1628520 Bordetella bronchiseptica RB50 2663142 NP_888069.1 CDS BB1524 NC_002927.3 1628651 1629862 D ABC transporter 1628651..1629862 Bordetella bronchiseptica RB50 2663265 NP_888070.1 CDS BB1525 NC_002927.3 1629875 1631029 D ABC transporter 1629875..1631029 Bordetella bronchiseptica RB50 2663543 NP_888071.1 CDS BB1526 NC_002927.3 1631035 1631823 D ABC transporter ATP-binding protein 1631035..1631823 Bordetella bronchiseptica RB50 2663267 NP_888072.1 CDS BB1527 NC_002927.3 1631908 1632252 D hypothetical protein 1631908..1632252 Bordetella bronchiseptica RB50 2662832 NP_888073.1 CDS BB1528 NC_002927.3 1632272 1633495 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(1632272..1633495) Bordetella bronchiseptica RB50 2663250 NP_888074.1 CDS BB1529 NC_002927.3 1633517 1634509 R dehydrogenase complement(1633517..1634509) Bordetella bronchiseptica RB50 2663402 NP_888075.1 CDS BB1530 NC_002927.3 1634506 1635780 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(1634506..1635780) Bordetella bronchiseptica RB50 2663106 NP_888076.1 CDS BB1531 NC_002927.3 1635785 1636582 R decarboxylase complement(1635785..1636582) Bordetella bronchiseptica RB50 2662940 NP_888077.1 CDS BB1532 NC_002927.3 1636582 1637376 R aldolase complement(1636582..1637376) Bordetella bronchiseptica RB50 2663853 NP_888078.1 CDS BB1533 NC_002927.3 1637373 1638167 R creatinine amidohydrolase complement(1637373..1638167) Bordetella bronchiseptica RB50 2663787 NP_888079.1 CDS BB1534 NC_002927.3 1638206 1639174 R hypothetical protein complement(1638206..1639174) Bordetella bronchiseptica RB50 2663801 NP_888080.1 CDS BB1535 NC_002927.3 1639171 1640130 R hypothetical protein complement(1639171..1640130) Bordetella bronchiseptica RB50 2663788 NP_888081.1 CDS BB1536 NC_002927.3 1640337 1641236 D LysR family transcriptional regulator 1640337..1641236 Bordetella bronchiseptica RB50 2663752 NP_888082.1 CDS BB1537 NC_002927.3 1641328 1641903 D hypothetical protein 1641328..1641903 Bordetella bronchiseptica RB50 2662761 NP_888083.1 CDS BB1538 NC_002927.3 1642125 1643840 D hypothetical protein 1642125..1643840 Bordetella bronchiseptica RB50 2663698 NP_888084.1 CDS BB1539 NC_002927.3 1643837 1644727 R LysR family transcriptional regulator complement(1643837..1644727) Bordetella bronchiseptica RB50 2663523 NP_888085.1 CDS BB1540 NC_002927.3 1644835 1645425 D hypothetical protein 1644835..1645425 Bordetella bronchiseptica RB50 2663498 NP_888086.1 CDS BB1541 NC_002927.3 1645427 1647028 D transferase 1645427..1647028 Bordetella bronchiseptica RB50 2663553 NP_888087.1 CDS metC NC_002927.3 1647059 1648285 D cystathionase beta-lyase 1647059..1648285 Bordetella bronchiseptica RB50 2663723 NP_888088.1 CDS BB1543 NC_002927.3 1648282 1649313 D hypothetical protein 1648282..1649313 Bordetella bronchiseptica RB50 2663018 NP_888089.1 CDS BB1544 NC_002927.3 1649368 1650360 D hypothetical protein 1649368..1650360 Bordetella bronchiseptica RB50 2663846 NP_888090.1 CDS bisC NC_002927.3 1650421 1652760 D biotin sulfoxide reductase 1650421..1652760 Bordetella bronchiseptica RB50 2663099 NP_888091.1 CDS BB1546 NC_002927.3 1652773 1653603 R hypothetical protein complement(1652773..1653603) Bordetella bronchiseptica RB50 2663753 NP_888092.1 CDS BB1547 NC_002927.3 1653617 1654369 R amino acid ABC transporter ATP-binding protein complement(1653617..1654369) Bordetella bronchiseptica RB50 2663591 NP_888093.1 CDS BB1548 NC_002927.3 1654362 1655165 R amino acid ABC transporter ATP-binding protein complement(1654362..1655165) Bordetella bronchiseptica RB50 2663706 NP_888094.1 CDS BB1549 NC_002927.3 1655162 1656166 R amino acid ABC transporter complement(1655162..1656166) Bordetella bronchiseptica RB50 2663056 NP_888095.1 CDS BB1550 NC_002927.3 1656163 1657035 R amino acid ABC transporter complement(1656163..1657035) Bordetella bronchiseptica RB50 2663017 NP_888096.1 CDS BB1551 NC_002927.3 1657100 1658239 R amino acid ABC transporter substrate-binding protein complement(1657100..1658239) Bordetella bronchiseptica RB50 2663514 NP_888097.1 CDS BB1552 NC_002927.3 1658393 1658713 R hypothetical protein complement(1658393..1658713) Bordetella bronchiseptica RB50 2662726 NP_888098.1 CDS BB1553 NC_002927.3 1659004 1659207 D hypothetical protein 1659004..1659207 Bordetella bronchiseptica RB50 2663020 NP_888099.1 CDS BB1554 NC_002927.3 1659328 1660629 D UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1659328..1660629 Bordetella bronchiseptica RB50 2663055 NP_888100.1 CDS BB1555 NC_002927.3 1660834 1661376 R hypothetical protein complement(1660834..1661376) Bordetella bronchiseptica RB50 2663098 NP_888101.1 CDS BB1556 NC_002927.3 1661421 1663271 R ortholog of Bordetella pertussis (BX470248) BP0872; ABC transporter ATP-binding protein complement(1661421..1663271) Bordetella bronchiseptica RB50 2663049 NP_888102.1 CDS tpm NC_002927.3 1663652 1664311 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 1663652..1664311 Bordetella bronchiseptica RB50 2663707 NP_888103.1 CDS vir-18 NC_002927.3 1664399 1664551 D ortholog of Bordetella pertussis (BX470248) BP0874; vir-repressed protein 1664399..1664551 Bordetella bronchiseptica RB50 2663026 NP_888104.1 CDS BB1559 NC_002927.3 1664660 1664827 D ortholog of Bordetella pertussis (BX470248) BP0875; hypothetical protein 1664660..1664827 Bordetella bronchiseptica RB50 2663731 NP_888105.1 CDS BB1560 NC_002927.3 1664839 1665519 R ortholog of Bordetella pertussis (BX470248) BP0876; lipoprotein complement(1664839..1665519) Bordetella bronchiseptica RB50 2663746 NP_888106.1 CDS BB1561 NC_002927.3 1665801 1666517 D ortholog of Bordetella pertussis (BX470248) BP0877; hypothetical protein 1665801..1666517 Bordetella bronchiseptica RB50 2663780 NP_888107.1 CDS BB1562 NC_002927.3 1666533 1667834 R ortholog of Bordetella pertussis (BX470248) BP0878; phospholipase complement(1666533..1667834) Bordetella bronchiseptica RB50 2663797 NP_888108.1 CDS BB1563 NC_002927.3 1667969 1669471 R ortholog of Bordetella pertussis (BX470248) BP0879; aldehyde dehydrogenase complement(1667969..1669471) Bordetella bronchiseptica RB50 2663814 NP_888109.1 CDS BB1564 NC_002927.3 1669991 1672879 D ortholog of Bordetella pertussis (BX470248) BP0880; hypothetical protein 1669991..1672879 Bordetella bronchiseptica RB50 2663037 NP_888110.1 CDS BB1565 NC_002927.3 1673103 1674455 D ortholog of Bordetella pertussis (BX470248) BP0882; hypothetical protein 1673103..1674455 Bordetella bronchiseptica RB50 2663510 NP_888111.1 CDS BB1566 NC_002927.3 1674484 1675008 D ortholog of Bordetella pertussis (BX470248) BP0883; biotin carboxyl carrier protein 1674484..1675008 Bordetella bronchiseptica RB50 2663506 NP_888112.1 CDS BB1567 NC_002927.3 1675005 1676459 D ortholog of Bordetella pertussis (BX470248) BP0884; carboxylase 1675005..1676459 Bordetella bronchiseptica RB50 2663551 NP_888113.1 CDS BB1568 NC_002927.3 1676494 1676802 D ortholog of Bordetella pertussis (BX470248) BP0885; hypothetical protein 1676494..1676802 Bordetella bronchiseptica RB50 2663718 NP_888114.1 CDS BB1569 NC_002927.3 1676848 1677723 D ortholog of Bordetella pertussis (BX470248) BP0886; hypothetical protein 1676848..1677723 Bordetella bronchiseptica RB50 2663725 NP_888115.1 CDS BB1570 NC_002927.3 1677749 1678804 D ortholog of Bordetella pertussis (BX470248) BP0887; hypothetical protein 1677749..1678804 Bordetella bronchiseptica RB50 2663726 NP_888116.1 CDS BB1571 NC_002927.3 1678817 1679608 D ortholog of Bordetella pertussis (BX470248) BP0888; GntR family transcriptional regulator 1678817..1679608 Bordetella bronchiseptica RB50 2663745 NP_888117.1 CDS accC NC_002927.3 1679641 1681011 D ortholog of Bordetella pertussis (BX470248) BP0889; biotin carboxylase 1679641..1681011 Bordetella bronchiseptica RB50 2663387 NP_888118.1 CDS BB1573 NC_002927.3 1681027 1682562 D ortholog of Bordetella pertussis (BX470248) BP0890; acyl-CoA carboxylase 1681027..1682562 Bordetella bronchiseptica RB50 2663576 NP_888119.1 CDS BB1574 NC_002927.3 1682608 1682829 D biotinylated protein 1682608..1682829 Bordetella bronchiseptica RB50 2663792 NP_888120.1 CDS BB1575 NC_002927.3 1682826 1683551 D acetyl-CoA synthetase 1682826..1683551 Bordetella bronchiseptica RB50 2663705 NP_888121.1 CDS BB1576 NC_002927.3 1683559 1685055 D hypothetical protein 1683559..1685055 Bordetella bronchiseptica RB50 2663036 NP_888122.1 CDS BB1577 NC_002927.3 1685094 1686101 D substrate-binding protein 1685094..1686101 Bordetella bronchiseptica RB50 2663012 NP_888123.1 CDS BB1578 NC_002927.3 1686204 1686761 D hypothetical protein 1686204..1686761 Bordetella bronchiseptica RB50 2663813 NP_888124.1 CDS BB1579 NC_002927.3 1686779 1688065 D hypothetical protein 1686779..1688065 Bordetella bronchiseptica RB50 2663759 NP_888125.1 CDS BB1580 NC_002927.3 1688078 1689316 D hypothetical protein 1688078..1689316 Bordetella bronchiseptica RB50 2663034 NP_888126.1 CDS BB1581 NC_002927.3 1689417 1690649 D reductase 1689417..1690649 Bordetella bronchiseptica RB50 2663065 NP_888127.1 CDS BB1582 NC_002927.3 1690748 1691158 D hypothetical protein 1690748..1691158 Bordetella bronchiseptica RB50 2663793 NP_888128.1 CDS BB1583 NC_002927.3 1691185 1691994 D decarboxylase 1691185..1691994 Bordetella bronchiseptica RB50 2663708 NP_888129.1 CDS BB1584 NC_002927.3 1692177 1693121 D LysR family transcriptional regulator 1692177..1693121 Bordetella bronchiseptica RB50 2663013 NP_888130.1 CDS BB1585 NC_002927.3 1693118 1694017 R hypothetical protein complement(1693118..1694017) Bordetella bronchiseptica RB50 2662462 NP_888131.1 CDS ndoA NC_002927.3 1694202 1694525 D ferredoxin 1694202..1694525 Bordetella bronchiseptica RB50 2659882 NP_888132.1 CDS BB1587 NC_002927.3 1694647 1695510 D oxygenase 1694647..1695510 Bordetella bronchiseptica RB50 2661331 NP_888133.1 CDS BB1588 NC_002927.3 1695522 1696520 D cyclodeaminase 1695522..1696520 Bordetella bronchiseptica RB50 2661540 NP_888134.1 CDS BB1589 NC_002927.3 1696548 1697666 D dioxygenase 1696548..1697666 Bordetella bronchiseptica RB50 2659311 NP_888135.1 CDS BB1590 NC_002927.3 1697695 1698192 D dioxygenase small subunit 1697695..1698192 Bordetella bronchiseptica RB50 2662055 NP_888136.1 CDS BB1591 NC_002927.3 1698208 1699449 D oxygenase (large subunit) 1698208..1699449 Bordetella bronchiseptica RB50 2659016 NP_888137.1 CDS BB1592 NC_002927.3 1699524 1700744 D ABC transporter substrate-binding protein 1699524..1700744 Bordetella bronchiseptica RB50 2658977 NP_888138.1 CDS BB1593 NC_002927.3 1700812 1701675 D ABC transporter 1700812..1701675 Bordetella bronchiseptica RB50 2660116 NP_888139.1 CDS BB1594 NC_002927.3 1701678 1702679 D ABC transporter 1701678..1702679 Bordetella bronchiseptica RB50 2660259 NP_888140.1 CDS BB1595 NC_002927.3 1702676 1703419 D ABC transporter ATP-binding protein 1702676..1703419 Bordetella bronchiseptica RB50 2661673 NP_888141.1 CDS BB1596 NC_002927.3 1703419 1704114 D ABC transporter ATP-binding protein 1703419..1704114 Bordetella bronchiseptica RB50 2661790 NP_888142.1 CDS BB1597 NC_002927.3 1704123 1704866 D oxidoreductase 1704123..1704866 Bordetella bronchiseptica RB50 2661159 NP_888143.1 CDS BB1598 NC_002927.3 1704902 1706497 R glutamyltransferase complement(1704902..1706497) Bordetella bronchiseptica RB50 2662563 NP_888144.1 CDS BB1599 NC_002927.3 1706520 1707491 R hypothetical protein complement(1706520..1707491) Bordetella bronchiseptica RB50 2662502 NP_888145.1 CDS BB1600 NC_002927.3 1707679 1708335 D GntR family transcriptional regulator 1707679..1708335 Bordetella bronchiseptica RB50 2662425 NP_888146.1 CDS BB1601 NC_002927.3 1708451 1709728 D hypothetical protein 1708451..1709728 Bordetella bronchiseptica RB50 2659127 NP_888147.1 CDS BB1602 NC_002927.3 1709730 1710293 R hypothetical protein complement(1709730..1710293) Bordetella bronchiseptica RB50 2662506 NP_888148.1 CDS BB1603 NC_002927.3 1710290 1710871 R hypothetical protein complement(1710290..1710871) Bordetella bronchiseptica RB50 2662588 NP_888149.1 CDS BB1604 NC_002927.3 1710868 1711458 R hypothetical protein complement(1710868..1711458) Bordetella bronchiseptica RB50 2662590 NP_888150.1 CDS BB1605 NC_002927.3 1711631 1713004 R hypothetical protein complement(1711631..1713004) Bordetella bronchiseptica RB50 2662482 NP_888151.1 CDS BB1606 NC_002927.3 1713075 1714139 R oxidoreductase complement(1713075..1714139) Bordetella bronchiseptica RB50 2662533 NP_888152.1 CDS BB1607 NC_002927.3 1714239 1715165 D LysR family transcriptional regulator 1714239..1715165 Bordetella bronchiseptica RB50 2659055 NP_888153.1 CDS BB1608 NC_002927.3 1715407 1715862 D ortholog of Bordetella pertussis (BX470248) BP2265; hypothetical protein 1715407..1715862 Bordetella bronchiseptica RB50 2662283 NP_888154.1 CDS bscF NC_002927.3 1715899 1716165 R ortholog of Bordetella pertussis (BX470248) BP2264; type III secretion protein complement(1715899..1716165) Bordetella bronchiseptica RB50 2663945 NP_888155.1 CDS bscE NC_002927.3 1716155 1716454 R ortholog of Bordetella pertussis (BX470248) BP2263; hypothetical protein complement(1716155..1716454) Bordetella bronchiseptica RB50 2661889 NP_888156.1 CDS bscD NC_002927.3 1716495 1717775 R ortholog of Bordetella pertussis (BX470248) BP2262; type III secretion protein complement(1716495..1717775) Bordetella bronchiseptica RB50 2661903 NP_888157.1 CDS bcrD NC_002927.3 1717772 1719871 R ortholog of Bordetella pertussis (BX470248) BP2261; type III secretion pore protein complement(1717772..1719871) Bordetella bronchiseptica RB50 2660167 NP_888158.1 CDS BB1613 NC_002927.3 1719868 1720236 R ortholog of Bordetella pertussis (BX470248) BP2260; hypothetical protein complement(1719868..1720236) Bordetella bronchiseptica RB50 2659207 NP_888159.1 CDS BB1614 NC_002927.3 1720233 1720643 R ortholog of Bordetella pertussis (BX470248) BP2259; hypothetical protein complement(1720233..1720643) Bordetella bronchiseptica RB50 2660263 NP_888160.1 CDS BB1615 NC_002927.3 1720648 1721025 R ortholog of Bordetella pertussis (BX470248) BP2258; hypothetical protein complement(1720648..1721025) Bordetella bronchiseptica RB50 2662200 NP_888161.1 CDS bopN NC_002927.3 1721022 1722119 R ortholog of Bordetella pertussis (BX470248) BP2257; outer protein N complement(1721022..1722119) Bordetella bronchiseptica RB50 2661677 NP_888162.1 CDS bsp22 NC_002927.3 1722283 1722900 D ortholog of Bordetella pertussis (BX470248) BP2256; secreted protein 1722283..1722900 Bordetella bronchiseptica RB50 2660218 NP_888163.1 CDS BB1618 NC_002927.3 1722923 1723198 D ortholog of Bordetella pertussis (BX470248) BP2255; hypothetical protein 1722923..1723198 Bordetella bronchiseptica RB50 2661758 NP_888164.1 CDS bcrH1 NC_002927.3 1723214 1723699 D ortholog of Bordetella pertussis (BX470248) BP2254; regulatory protein 1723214..1723699 Bordetella bronchiseptica RB50 2661789 NP_888165.1 CDS bopD NC_002927.3 1723747 1724688 D ortholog of Bordetella pertussis (BX470248) BP2253; outer protein D 1723747..1724688 Bordetella bronchiseptica RB50 2659170 NP_888166.1 CDS bopB NC_002927.3 1724718 1725920 D ortholog of Bordetella pertussis (BX470248) BP2252; outer protein B 1724718..1725920 Bordetella bronchiseptica RB50 2660119 NP_888167.1 CDS bcrH2 NC_002927.3 1725944 1726405 D ortholog of Bordetella pertussis (BX470248) BP2251; regulatory protein 1725944..1726405 Bordetella bronchiseptica RB50 2659350 NP_888168.1 CDS bcr4 NC_002927.3 1726410 1726931 D ortholog of Bordetella pertussis (BX470248) BP2250; hypothetical protein 1726410..1726931 Bordetella bronchiseptica RB50 2660600 NP_888169.1 CDS bscI NC_002927.3 1726928 1727356 D ortholog of Bordetella pertussis (BX470248) BP2249; type III secretion protein 1726928..1727356 Bordetella bronchiseptica RB50 2660534 NP_888170.1 CDS bscJ NC_002927.3 1727353 1728177 D ortholog of Bordetella pertussis (BX470248) BP2248; type III secretion protein 1727353..1728177 Bordetella bronchiseptica RB50 2660407 NP_888171.1 CDS bscK NC_002927.3 1728170 1728832 D ortholog of Bordetella pertussis (BX470248) BP2247; hypothetical protein 1728170..1728832 Bordetella bronchiseptica RB50 2661230 NP_888172.1 CDS bscL NC_002927.3 1728877 1729440 D ortholog of Bordetella pertussis (BX470248) BP2246; type III secretion system protein 1728877..1729440 Bordetella bronchiseptica RB50 2659498 NP_888173.1 CDS bscN NC_002927.3 1729445 1730779 D ortholog of Bordetella pertussis (BX470248) BP2245; type III secretion system ATPase 1729445..1730779 Bordetella bronchiseptica RB50 2662485 NP_888174.1 CDS bscO NC_002927.3 1730779 1731288 D ortholog of Bordetella pertussis (BX470248) BP2244; type III secretion protein 1730779..1731288 Bordetella bronchiseptica RB50 2659846 NP_888175.1 CDS bscP NC_002927.3 1731285 1731833 D ortholog of Bordetella pertussis (BX470248) BP2243; hypothetical protein 1731285..1731833 Bordetella bronchiseptica RB50 2659853 NP_888176.1 CDS bscQ NC_002927.3 1731830 1732909 D ortholog of Bordetella pertussis (BX470248) BP2241; type III secretion protein 1731830..1732909 Bordetella bronchiseptica RB50 2659861 NP_888177.1 CDS bscR NC_002927.3 1732906 1733577 D part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 1732906..1733577 Bordetella bronchiseptica RB50 2661312 NP_888178.1 CDS bscS NC_002927.3 1733574 1733849 D ortholog of Bordetella pertussis (BX470248) BP2239; type III secretion protein 1733574..1733849 Bordetella bronchiseptica RB50 2661604 NP_888179.1 CDS bscT NC_002927.3 1733861 1734661 D ortholog of Bordetella pertussis (BX470248) BP2238; type III secretion protein 1733861..1734661 Bordetella bronchiseptica RB50 2659871 NP_888180.1 CDS bscU NC_002927.3 1734658 1735707 D ortholog of Bordetella pertussis (BX470248) BP2237; type III secretion protein 1734658..1735707 Bordetella bronchiseptica RB50 2661171 NP_888181.1 CDS bscW NC_002927.3 1735704 1736102 D ortholog of Bordetella pertussis (BX470248) BP2236; hypothetical protein 1735704..1736102 Bordetella bronchiseptica RB50 2659779 NP_888182.1 CDS bscC NC_002927.3 1736093 1737895 D ortholog of Bordetella pertussis (BX470248) BP2235; type III secretion protein 1736093..1737895 Bordetella bronchiseptica RB50 2662270 NP_888183.1 CDS btrS NC_002927.3 1737917 1738519 R ortholog of Bordetella pertussis (BX470248) BP2234; RNA polymerase sigma factor complement(1737917..1738519) Bordetella bronchiseptica RB50 2661921 NP_888184.1 CDS BB1639 NC_002927.3 1738694 1739374 R ortholog of Bordetella pertussis (BX470248) BP2233; hypothetical protein complement(1738694..1739374) Bordetella bronchiseptica RB50 2659248 NP_888185.1 CDS BB1640 NC_002927.3 1739436 1740920 D ortholog of Bordetella pertussis (BX470248) BP2232; hypothetical protein 1739436..1740920 Bordetella bronchiseptica RB50 2662579 NP_888186.1 CDS BB1641 NC_002927.3 1740962 1742149 R ortholog of Bordetella pertussis (BX470248) BP2231; hypothetical protein complement(1740962..1742149) Bordetella bronchiseptica RB50 2662073 NP_888187.1 CDS btrU NC_002927.3 1742146 1744167 R ortholog of Bordetella pertussis (BX470248) BP2230; regulator complement(1742146..1744167) Bordetella bronchiseptica RB50 2662560 NP_888188.1 CDS BB1643 NC_002927.3 1744252 1746699 D ortholog of Bordetella pertussis (BX470248) BP2229; inner membrane transport protein 1744252..1746699 Bordetella bronchiseptica RB50 2662531 NP_888189.1 CDS alr NC_002927.3 1746696 1747859 R ortholog of Bordetella pertussis (BX470248) BP2228; alanine racemase, catabolic complement(1746696..1747859) Bordetella bronchiseptica RB50 2661802 NP_888190.1 CDS btrW NC_002927.3 1747943 1748371 R ortholog of Bordetella pertussis (BX470248) BP2227; anti-sigma factor complement(1747943..1748371) Bordetella bronchiseptica RB50 2661695 NP_888191.1 CDS btrV NC_002927.3 1748515 1748865 D ortholog of Bordetella pertussis (BX470248) BP2226; anti-sigma factor antagonist 1748515..1748865 Bordetella bronchiseptica RB50 2661684 NP_888192.1 CDS BB1647 NC_002927.3 1748862 1750406 R ortholog of Bordetella pertussis (BX470248) BP2225; phospholipase complement(1748862..1750406) Bordetella bronchiseptica RB50 2659360 NP_888193.1 CDS BB1648 NC_002927.3 1750724 1751191 R Similar to Salmonella typhi acetyltransferase YjaB or sty4399 SWALL:Q8Z1W2 (EMBL:AL627282) (145 aa) fasta scores: E(): 1.3e-30, 56.73% id in 141 aa, and to Escherichia coli hypothetical acetyltransferase YjaB or b4012 SWALL:YJAB_ECOLI (SWALL:P09163) (147 aa) fasta scores: E(): 6.1e-29, 54.67% id in 139 aa; hypothetical protein complement(1750724..1751191) Bordetella bronchiseptica RB50 2661778 NP_888194.1 CDS bapA NC_002927.3 1751345 1754056 D ortholog of Bordetella pertussis (BX470248) BP2224; autotransporter 1751345..1754056 Bordetella bronchiseptica RB50 2661757 NP_888195.1 CDS BB1650 NC_002927.3 1754319 1754591 D ortholog of Bordetella pertussis (BX470248) BP2222; hypothetical protein 1754319..1754591 Bordetella bronchiseptica RB50 2661733 NP_888196.1 CDS BB1651 NC_002927.3 1754661 1755425 R ortholog of Bordetella pertussis (BX470248) BP1553; hypothetical protein complement(1754661..1755425) Bordetella bronchiseptica RB50 2660155 NP_888197.1 CDS BB1652 NC_002927.3 1755422 1756021 R ortholog of Bordetella pertussis (BX470248) BP1554; hypothetical protein complement(1755422..1756021) Bordetella bronchiseptica RB50 2660229 NP_888198.1 CDS BB1653 NC_002927.3 1756126 1756971 R ortholog of Bordetella pertussis (BX470248) BP1555; hypothetical protein complement(1756126..1756971) Bordetella bronchiseptica RB50 2662131 NP_888199.1 CDS BB1654 NC_002927.3 1757039 1757665 D ortholog of Bordetella pertussis (BX470248) BP1556; hypothetical protein 1757039..1757665 Bordetella bronchiseptica RB50 2659202 NP_888200.1 CDS BB1655 NC_002927.3 1757698 1758369 D ortholog of Bordetella pertussis (BX470248) BP1571; hypothetical protein 1757698..1758369 Bordetella bronchiseptica RB50 2662460 NP_888201.1 CDS dapA NC_002927.3 1758455 1759360 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1758455..1759360 Bordetella bronchiseptica RB50 2661167 NP_888202.1 CDS BB1657 NC_002927.3 1759372 1760499 D ortholog of Bordetella pertussis (BX470248) BP1569; lipoprotein 1759372..1760499 Bordetella bronchiseptica RB50 2662792 NP_888203.1 CDS fim3 NC_002927.3 1760587 1761213 R ortholog of Bordetella pertussis (BX470248) BP1568; serotype 3 fimbrial subunit precursor complement(1760587..1761213) Bordetella bronchiseptica RB50 2662807 NP_888204.1 CDS BB1659 NC_002927.3 1761942 1763129 R ortholog of Bordetella pertussis (BX470248) BP1567; hypothetical protein complement(1761942..1763129) Bordetella bronchiseptica RB50 2663107 NP_888205.1 CDS mutS NC_002927.3 1763126 1765723 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1763126..1765723) Bordetella bronchiseptica RB50 2662916 NP_888206.1 CDS BB1661 NC_002927.3 1765780 1766739 R Similar to Bacteriophage HK022 integrase SWALL:AAF30377 (EMBL:AF069308) (357 aa) fasta scores: E(): 6.6e-11, 29.88% id in 338 aa, and to Escherichia coli O157:H7 integrase for cryptic prophage cp-933m z1323 or ecs1055 SWALL:Q8XD80 (EMBL:AE005287) (339 aa) fasta scores: E(): 3.1e-19, 29.32% id in 324 aa; integrase complement(1765780..1766739) Bordetella bronchiseptica RB50 2662900 NP_888207.1 CDS BB1662 NC_002927.3 1766747 1766959 R no significant database matches; hypothetical protein complement(1766747..1766959) Bordetella bronchiseptica RB50 2663075 NP_888208.1 CDS BB1663 NC_002927.3 1767116 1767763 R Similar to Xylella fastidiosa phage-related protein xf0485 SWALL:Q9PG17 (EMBL:AE003898) (181 aa) fasta scores: E(): 6.5e-16, 36.4% id in 206 aa, and to Sinorhizobium meliloti phage PBC5 hypothetical 28.0 kDa protein orf72 SWALL:Q8W6F5 (EMBL:AF448724) (246 aa) fasta scores: E(): 3.7e-14, 35.65% id in 244 aa; hypothetical protein complement(1767116..1767763) Bordetella bronchiseptica RB50 2662756 NP_888209.1 CDS BB1664 NC_002927.3 1767760 1767882 R no significant database matches; phage-related membrane protein complement(1767760..1767882) Bordetella bronchiseptica RB50 2662906 NP_888210.1 CDS BB1665 NC_002927.3 1767875 1768051 R no significant database matches; hypothetical protein complement(1767875..1768051) Bordetella bronchiseptica RB50 2663404 NP_888211.1 CDS BB1666 NC_002927.3 1768048 1769559 R no significant database matches; hypothetical protein complement(1768048..1769559) Bordetella bronchiseptica RB50 2662875 NP_888212.1 CDS BB1667 NC_002927.3 1769556 1769789 R no significant database matches; hypothetical protein complement(1769556..1769789) Bordetella bronchiseptica RB50 2663440 NP_888213.1 CDS BB1668 NC_002927.3 1769786 1771720 R Similar to Bacteriophage phi-H cytosine methylase dcm5A SWALL:Q38204 (EMBL:X80164) (245 aa) fasta scores: E(): 3e-09, 30.7% id in 241 aa, and to Rhizobium loti modification methylase mlr8517 SWALL:Q982S6 (EMBL:AP003014) (667 aa) fasta scores: E(): 2.4e-41, 40.73% id in 680 aa; modification methylase complement(1769786..1771720) Bordetella bronchiseptica RB50 2663619 NP_888214.1 CDS BB1669 NC_002927.3 1771722 1772207 R Similar to Neisseria gonorrhoeae DNA N-4 cytosine methyltransferase m.ngomxv SWALL:Q9AKV2 (EMBL:AJ004687) (153 aa) fasta scores: E(): 8.2e-28, 47.68% id in 151 aa, and to Salmonella typhi methyltransferase sty1026 SWALL:Q8Z7X6 (EMBL:AL627268) (157 aa) fasta scores: E(): 1.2e-39, 60.25% id in 156 aa; methyltransferase complement(1771722..1772207) Bordetella bronchiseptica RB50 2663365 NP_888215.1 CDS BB1670 NC_002927.3 1772209 1772550 R no significant database matches; hypothetical protein complement(1772209..1772550) Bordetella bronchiseptica RB50 2663357 NP_888216.1 CDS BB1671 NC_002927.3 1772547 1772774 R no significant database matches; hypothetical protein complement(1772547..1772774) Bordetella bronchiseptica RB50 2663418 NP_888217.1 CDS BB1672 NC_002927.3 1772771 1773292 R no significant database matches; hypothetical protein complement(1772771..1773292) Bordetella bronchiseptica RB50 2663433 NP_888218.1 CDS BB1673 NC_002927.3 1773289 1773933 R no significant database matches; hypothetical protein complement(1773289..1773933) Bordetella bronchiseptica RB50 2663860 NP_888219.1 CDS BB1674 NC_002927.3 1773930 1774754 R Similar to Bacteriophage phiE125 Gp58 58 SWALL:Q8W6P2 (EMBL:AF447491) (273 aa) fasta scores: E(): 1.9e-39, 49.43% id in 267 aa, and to Chlamydia muridarum probable chromosome partitioning protein ParB or tc0060 SWALL:PARB_CHLMU (SWALL:Q9PLN9) (280 aa) fasta scores: E(): 0.00047, 25.68% id in 218 aa; hypothetical protein complement(1773930..1774754) Bordetella bronchiseptica RB50 2663837 NP_888220.1 CDS BB1675 NC_002927.3 1774775 1775146 R no significant database matches; hypothetical protein complement(1774775..1775146) Bordetella bronchiseptica RB50 2663827 NP_888221.1 CDS BB1676 NC_002927.3 1775157 1775393 R no significant database matches; phage-related membrane protein complement(1775157..1775393) Bordetella bronchiseptica RB50 2663434 NP_888222.1 CDS BB1677 NC_002927.3 1775766 1776062 D no significant database matches; hypothetical protein 1775766..1776062 Bordetella bronchiseptica RB50 2662963 NP_888223.1 CDS BB1678 NC_002927.3 1776367 1777050 R Similar to Bacteriophage HK97 prophage repressor CI SWALL:Q9MCQ2 (EMBL:AF069529) (237 aa) fasta scores: E(): 6e-08, 28.88% id in 225 aa, and to Bacteriophage P27 lambda repressor SWALL:Q8W648 (EMBL:AJ298298) (218 aa) fasta scores: E(): 4.7e-10, 32.9% id in 231 aa; phage repressor complement(1776367..1777050) Bordetella bronchiseptica RB50 2663015 NP_888224.1 CDS BB1679 NC_002927.3 1777452 1777982 D Similar to Ralstonia solanacearum hypothetical protein rsc1675 rsc1675 or rs04063 SWALL:Q8XYT3 (EMBL:AL646065) (167 aa) fasta scores: E(): 0.009, 28.96% id in 145 aa; hypothetical protein 1777452..1777982 Bordetella bronchiseptica RB50 2662688 NP_888225.1 CDS BB1680 NC_002927.3 1777979 1778284 D no significant database matches; hypothetical protein 1777979..1778284 Bordetella bronchiseptica RB50 2663286 NP_888226.1 CDS BB1681 NC_002927.3 1778277 1778579 D no significant database matches; hypothetical protein 1778277..1778579 Bordetella bronchiseptica RB50 2663432 NP_888227.1 CDS BB1682 NC_002927.3 1778576 1779070 D no significant database matches; hypothetical protein 1778576..1779070 Bordetella bronchiseptica RB50 2663430 NP_888228.1 CDS BB1683 NC_002927.3 1779067 1780023 D no significant database matches; hypothetical protein 1779067..1780023 Bordetella bronchiseptica RB50 2663665 NP_888229.1 CDS BB1684 NC_002927.3 1780265 1780744 D no significant database matches; hypothetical protein 1780265..1780744 Bordetella bronchiseptica RB50 2663410 NP_888230.1 CDS BB1685 NC_002927.3 1780741 1781109 D no significant database matches; hypothetical protein 1780741..1781109 Bordetella bronchiseptica RB50 2663858 NP_888231.1 CDS BB1686 NC_002927.3 1781109 1781606 D Similar to Bacteriophage D3 Orf76 orf76 SWALL:Q9MC52 (EMBL:AF165214) (169 aa) fasta scores: E(): 1.6e-09, 28.65% id in 171 aa; hypothetical protein 1781109..1781606 Bordetella bronchiseptica RB50 2663539 NP_888232.1 CDS BB1687 NC_002927.3 1781607 1782290 D no significant database matches; hypothetical protein 1781607..1782290 Bordetella bronchiseptica RB50 2662987 NP_888233.1 CDS BB1688 NC_002927.3 1782547 1782825 R Similar to Xylella fastidiosa hypothetical protein Xf1563 SWALL:Q9PD17 (EMBL:AE003986) (112 aa) fasta scores: E(): 3.9e-07, 50% id in 108 aa, and to Neisseria meningitidis hypothetical protein Nma1326 SWALL:Q9JUG2 (EMBL:AL162755) (100 aa) fasta scores: E(): 2.8e-05, 40.69% id in 86 aa; hypothetical protein complement(1782547..1782825) Bordetella bronchiseptica RB50 2663630 NP_888234.1 CDS BB1689 NC_002927.3 1782812 1783078 R Similar to Xylella fastidiosa hypothetical protein Xf1562 SWALL:Q9PD18 (EMBL:AE003986) (88 aa) fasta scores: E(): 6.7e-16, 56.81% id in 88 aa, and to Synechocystis sp. hypothetical protein Sll1965 SWALL:P73378 (EMBL:D90905) (136 aa) fasta scores: E(): 1.5e-05, 38.37% id in 86 aa; hypothetical protein complement(1782812..1783078) Bordetella bronchiseptica RB50 2663873 NP_888235.1 CDS BB1690 NC_002927.3 1783437 1784057 D no significant database matches; phage-related endonuclease 1783437..1784057 Bordetella bronchiseptica RB50 2662911 NP_888236.1 CDS BB1691 NC_002927.3 1784163 1784582 D no significant database matches; hypothetical protein 1784163..1784582 Bordetella bronchiseptica RB50 2663844 NP_888237.1 CDS BB1692 NC_002927.3 1784560 1786329 D Similar to Bacteriophage D3 terminase orf2 SWALL:Q9XJT6 (EMBL:AF165214) (563 aa) fasta scores: E(): 1e-25, 32.43% id in 592 aa, and to Bacteriophage P27 terminase SWALL:Q8W631 (EMBL:AJ298298) (570 aa) fasta scores: E(): 1.4e-28, 29.69% id in 586 aa; terminase 1784560..1786329 Bordetella bronchiseptica RB50 2663426 NP_888238.1 CDS BB1693 NC_002927.3 1786326 1787621 D Similar to Bacteriophage D3 portal protein orf4 SWALL:Q9XJT5 (EMBL:AF165214) (434 aa) fasta scores: E(): 2.4e-69, 44.44% id in 414 aa, and to Bacteriophage HK97 portal protein 3 SWALL:VP3_BPHK7 (SWALL:P49859) (424 aa) fasta scores: E(): 1.5e-31, 31.68% id in 385 aa; portal protein 1786326..1787621 Bordetella bronchiseptica RB50 2663371 NP_888239.1 CDS BB1694 NC_002927.3 1787633 1788508 D Similar to Bacteriophage D3 ClpP protease orf5 SWALL:Q9XJT4 (EMBL:AF165214) (296 aa) fasta scores: E(): 1.8e-53, 54% id in 287 aa, and to Rhizobium loti hypothetical protein Mlr8523 SWALL:Q982R9 (EMBL:AP003014) (281 aa) fasta scores: E(): 1.5e-36, 44.77% id in 268 aa; phage-related Clp protease 1787633..1788508 Bordetella bronchiseptica RB50 2662779 NP_888240.1 CDS BB1695 NC_002927.3 1788513 1789712 D Similar to Bacteriophage D3 major head protein orf6 SWALL:Q9XJT3 (EMBL:AF165214) (395 aa) fasta scores: E(): 7.8e-60, 46.58% id in 395 aa, and to Bacteriophage HK022 major capsid subunit precursor SWALL:AAF30357 (EMBL:AF069308) (385 aa) fasta scores: E(): 1.1e-49, 42.38% id in 394 aa; major head protein 1788513..1789712 Bordetella bronchiseptica RB50 2663531 NP_888241.1 CDS BB1696 NC_002927.3 1789762 1789995 D no significant database matches; hypothetical protein 1789762..1789995 Bordetella bronchiseptica RB50 2663700 NP_888242.1 CDS BB1697 NC_002927.3 1789998 1790327 D Similar to Bacteriophage D3 Orf9 SWALL:Q9XJT1 (EMBL:AF165214) (106 aa) fasta scores: E(): 1.7e-16, 57.79% id in 109 aa; hypothetical protein 1789998..1790327 Bordetella bronchiseptica RB50 2663796 NP_888243.1 CDS BB1698 NC_002927.3 1790324 1790701 D Similar to Bacteriophage D3 Orf10 SWALL:Q9XJT0 (EMBL:AF165214) (118 aa) fasta scores: E(): 7.7e-21, 49.19% id in 124 aa, and to Bacteriophage HK022 Gp9 SWALL:Q9MCV2 (EMBL:AF069308) (110 aa) fasta scores: E(): 0.37, 30.46% id in 128 aa; hypothetical protein 1790324..1790701 Bordetella bronchiseptica RB50 2663009 NP_888244.1 CDS BB1699 NC_002927.3 1790704 1790922 D no significant database matches; hypothetical protein 1790704..1790922 Bordetella bronchiseptica RB50 2663508 NP_888245.1 CDS BB1700 NC_002927.3 1790919 1791404 D no significant database matches; hypothetical protein 1790919..1791404 Bordetella bronchiseptica RB50 2662977 NP_888246.1 CDS BB1701 NC_002927.3 1791404 1791775 D Similar to Bacteriophage D3 Orf15 orf15 SWALL:Q9MCA6 (EMBL:AF165214) (121 aa) fasta scores: E(): 2.8e-10, 37.6% id in 125 aa, and to Bacteriophage HK022 gp11 SWALL:Q9MCV0 (EMBL:AF069308) (121 aa) fasta scores: E(): 5.7e-08, 32.79% id in 125 aa; hypothetical protein 1791404..1791775 Bordetella bronchiseptica RB50 2663737 NP_888247.1 CDS BB1702 NC_002927.3 1791838 1792335 D Similar to Bacteriophage D3 orf15 orf16 SWALL:Q9MCA5 (EMBL:AF165214) (173 aa) fasta scores: E(): 2.6e-07, 35.63% id in 174 aa, and to Pseudomonas aeruginosa vf2 protein or pa0633 SWALL:Q9R3G3 (EMBL:AB030825) (164 aa) fasta scores: E(): 4.6e-09, 32.53% id in 166 aa; hypothetical protein 1791838..1792335 Bordetella bronchiseptica RB50 2663733 NP_888248.1 CDS BB1703 NC_002927.3 1792345 1792677 D no significant database matches; hypothetical protein 1792345..1792677 Bordetella bronchiseptica RB50 2663823 NP_888249.1 CDS BB1704 NC_002927.3 1792737 1793003 D no significant database matches; hypothetical protein 1792737..1793003 Bordetella bronchiseptica RB50 2662922 NP_888250.1 CDS BB1705 NC_002927.3 1793117 1793476 D no significant database matches; hypothetical protein 1793117..1793476 Bordetella bronchiseptica RB50 2663834 NP_888251.1 CDS BB1706 NC_002927.3 1793694 1796516 D Similar to Escherichia coli O157:H7 minor tail protein precursor H or ecs2949 SWALL:Q9EYE1 (EMBL:AP000400) (881 aa) fasta scores: E(): 4.9e-18, 24.74% id in 885 aa, and to Salmonella typhimurium fels-1 prophage, minor tail protein stm0918 SWALL:Q8ZQG3 (EMBL:AE008738) (1053 aa) fasta scores: E(): 6e-14, 22.86% id in 888 aa; tail component of prophage 1793694..1796516 Bordetella bronchiseptica RB50 2663031 NP_888252.1 CDS BB1707 NC_002927.3 1796518 1796865 D no significant database matches; hypothetical protein 1796518..1796865 Bordetella bronchiseptica RB50 2663810 NP_888253.1 CDS BB1708 NC_002927.3 1796867 1797343 D no significant database matches; hypothetical protein 1796867..1797343 Bordetella bronchiseptica RB50 2663809 NP_888254.1 CDS BB1709 NC_002927.3 1797343 1797729 D no significant database matches; hypothetical protein 1797343..1797729 Bordetella bronchiseptica RB50 2663763 NP_888255.1 CDS BB1710 NC_002927.3 1797756 1801562 D no significant database matches; hypothetical protein 1797756..1801562 Bordetella bronchiseptica RB50 2663829 NP_888256.1 CDS BB1711 NC_002927.3 1801567 1802343 D no significant database matches; hypothetical protein 1801567..1802343 Bordetella bronchiseptica RB50 2663888 NP_888257.1 CDS BB1712 NC_002927.3 1802340 1802729 D no significant database matches; hypothetical protein 1802340..1802729 Bordetella bronchiseptica RB50 2661676 NP_888258.1 CDS BB1713 NC_002927.3 1802789 1803259 D no significant database matches; phage-related membrane protein 1802789..1803259 Bordetella bronchiseptica RB50 2661629 NP_888259.1 CDS BB1714 NC_002927.3 1803256 1803804 D no significant database matches; hypothetical protein 1803256..1803804 Bordetella bronchiseptica RB50 2660148 NP_888260.1 CDS BB1715 NC_002927.3 1803804 1804070 D no significant database matches; hypothetical protein 1803804..1804070 Bordetella bronchiseptica RB50 2661711 NP_888261.1 CDS BB1716 NC_002927.3 1804172 1804498 R no significant database matches; hypothetical protein complement(1804172..1804498) Bordetella bronchiseptica RB50 2659634 NP_888262.1 CDS BB1717 NC_002927.3 1804550 1805209 R Similar to Bacteriophage phiE125 gp33 33 SWALL:Q8W6R8 (EMBL:AF447491) (223 aa) fasta scores: E(): 8.8e-13, 34.73% id in 167 aa, and to Pseudomonas syringae pv. maculicola hypothetical 24.0 kDa protein SWALL:Q93TE6 (EMBL:AF359557) (213 aa) fasta scores: E(): 3.7e-36, 49.54% id in 218 aa; hypothetical protein complement(1804550..1805209) Bordetella bronchiseptica RB50 2662160 NP_888263.1 CDS BB1718 NC_002927.3 1805664 1805879 D ortholog of Bordetella pertussis (BX470248) BP1565; hypothetical protein 1805664..1805879 Bordetella bronchiseptica RB50 2660217 NP_888264.1 CDS BB1719 NC_002927.3 1806335 1806889 R ortholog of Bordetella pertussis (BX470248) BP1563; chromate reductase complement(1806335..1806889) Bordetella bronchiseptica RB50 2661726 NP_888265.1 CDS BB1720 NC_002927.3 1807168 1807716 D ortholog of Bordetella pertussis (BX470248) BP1562; hypothetical protein 1807168..1807716 Bordetella bronchiseptica RB50 2660142 NP_888266.1 CDS BB1721 NC_002927.3 1807828 1809132 D ortholog of Bordetella pertussis (BX470248) BP1561; hypothetical protein 1807828..1809132 Bordetella bronchiseptica RB50 2660255 NP_888267.1 CDS BB1722 NC_002927.3 1809129 1810640 D ortholog of Bordetella pertussis (BX470248) BP1560; hypothetical protein 1809129..1810640 Bordetella bronchiseptica RB50 2659169 NP_888268.1 CDS BB1723 NC_002927.3 1810670 1811758 D ortholog of Bordetella pertussis (BX470248) BP1559; hypothetical protein 1810670..1811758 Bordetella bronchiseptica RB50 2661694 NP_888269.1 CDS BB1724 NC_002927.3 1811748 1812854 D ortholog of Bordetella pertussis (BX470248) BP1558; hypothetical protein 1811748..1812854 Bordetella bronchiseptica RB50 2661707 NP_888270.1 CDS BB1725 NC_002927.3 1812960 1813793 D ortholog of Bordetella pertussis (BX470248) BP1898; hypothetical protein 1812960..1813793 Bordetella bronchiseptica RB50 2661292 NP_888271.1 CDS BB1726 NC_002927.3 1813800 1814618 R ortholog of Bordetella pertussis (BX470248) BP1899; transcriptional regulator complement(1813800..1814618) Bordetella bronchiseptica RB50 2661495 NP_888272.1 CDS BB1727 NC_002927.3 1814720 1815712 D ortholog of Bordetella pertussis (BX470248) BP1900; hypothetical protein 1814720..1815712 Bordetella bronchiseptica RB50 2660269 NP_888273.1 CDS BB1728 NC_002927.3 1815931 1816707 R ortholog of Bordetella pertussis (BX470248) BP1901; methyltransferase complement(1815931..1816707) Bordetella bronchiseptica RB50 2660182 NP_888274.1 CDS suhB NC_002927.3 1816815 1817597 D ortholog of Bordetella pertussis (BX470248) BP1902; probable inositol monophosphatase; inositol-1-monophosphatase 1816815..1817597 Bordetella bronchiseptica RB50 2660091 NP_888275.1 CDS BB1730 NC_002927.3 1817752 1819338 D ortholog of Bordetella pertussis (BX470248) BP1903; hypothetical protein 1817752..1819338 Bordetella bronchiseptica RB50 2661715 NP_888276.1 CDS uppP NC_002927.3 1819363 1820226 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1819363..1820226 Bordetella bronchiseptica RB50 2661924 NP_888277.1 CDS lpxH NC_002927.3 1820381 1821157 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(1820381..1821157) Bordetella bronchiseptica RB50 2661904 NP_888278.1 CDS ppiB NC_002927.3 1821150 1821659 R ortholog of Bordetella pertussis (BX470248) BP1906; peptidyl-prolyl cis-trans isomerase B complement(1821150..1821659) Bordetella bronchiseptica RB50 2662248 NP_888279.1 CDS BB1734 NC_002927.3 1821788 1822471 R ortholog of Bordetella pertussis (BX470248) BP1907; hypothetical protein complement(1821788..1822471) Bordetella bronchiseptica RB50 2661900 NP_888280.1 CDS cysS NC_002927.3 1822711 1824168 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1822711..1824168 Bordetella bronchiseptica RB50 2662322 NP_888281.1 CDS BB1736 NC_002927.3 1824189 1824833 D ortholog of Bordetella pertussis (BX470248) BP1909; DNA-3-methyladenine glycosylase 1824189..1824833 Bordetella bronchiseptica RB50 2662330 NP_888282.1 CDS accA NC_002927.3 1824870 1825835 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1824870..1825835 Bordetella bronchiseptica RB50 2662304 NP_888283.1 CDS BB1738 NC_002927.3 1825896 1826930 D ortholog of Bordetella pertussis (BX470248) BP1912; hypothetical protein 1825896..1826930 Bordetella bronchiseptica RB50 2662351 NP_888284.1 CDS ask NC_002927.3 1827003 1828295 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1827003..1828295 Bordetella bronchiseptica RB50 2662342 NP_888285.1 CDS BB1740 NC_002927.3 1828838 1829338 D ortholog of Bordetella pertussis (BX470248) BP1915; hypothetical protein 1828838..1829338 Bordetella bronchiseptica RB50 2662396 NP_888286.1 CDS BB1741 NC_002927.3 1829380 1829694 D ortholog of Bordetella pertussis (BX470248) BP1916; hypothetical protein 1829380..1829694 Bordetella bronchiseptica RB50 2662287 NP_888287.1 CDS BB1742 NC_002927.3 1829704 1830645 D Converts (S)-3-hydroxyactk-CoA to 3-oxoayl-CoA; 3-hydroxyacyl-CoA dehydrogenase 1829704..1830645 Bordetella bronchiseptica RB50 2662367 NP_888288.1 CDS BB1743 NC_002927.3 1830642 1831166 D ortholog of Bordetella pertussis (BX470248) BP1918; hypothetical protein 1830642..1831166 Bordetella bronchiseptica RB50 2662286 NP_888289.1 CDS BB1744 NC_002927.3 1831169 1832437 D ortholog of Bordetella pertussis (BX470248) BP1919; hypothetical protein 1831169..1832437 Bordetella bronchiseptica RB50 2662450 NP_888290.1 CDS BB1745 NC_002927.3 1832466 1833449 D ortholog of Bordetella pertussis (BX470248) BP1920; hypothetical protein 1832466..1833449 Bordetella bronchiseptica RB50 2662459 NP_888291.1 CDS bioH NC_002927.3 1833446 1834255 D ortholog of Bordetella pertussis (BX470248) BP1921; hydrolase 1833446..1834255 Bordetella bronchiseptica RB50 2662461 NP_888292.1 CDS BB1747 NC_002927.3 1834252 1835055 D catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis; L-aspartate dehydrogenase 1834252..1835055 Bordetella bronchiseptica RB50 2662476 NP_888293.1 CDS BB1748 NC_002927.3 1835070 1835837 D ortholog of Bordetella pertussis (BX470248) BP1923; short chain dehydrogenase 1835070..1835837 Bordetella bronchiseptica RB50 2662489 NP_888294.1 CDS BB1749 NC_002927.3 1835925 1836563 D ortholog of Bordetella pertussis (BX470248) BP1924; TetR family transcriptional regulator 1835925..1836563 Bordetella bronchiseptica RB50 2662532 NP_888295.1 CDS BB1750 NC_002927.3 1836568 1837521 R ortholog of Bordetella pertussis (BX470248) BP1925; LysR family transcriptional regulator complement(1836568..1837521) Bordetella bronchiseptica RB50 2662457 NP_888296.1 CDS BB1751 NC_002927.3 1837633 1838757 D ortholog of Bordetella pertussis (BX470248) BP1926; spermidine/putrescine ABC transporter substrate-binding protein 1837633..1838757 Bordetella bronchiseptica RB50 2662577 NP_888297.1 CDS BB1752 NC_002927.3 1838768 1840408 D ortholog of Bordetella pertussis (BX470248) BP1927; hypothetical protein 1838768..1840408 Bordetella bronchiseptica RB50 2662549 NP_888298.1 CDS BB1753 NC_002927.3 1840411 1841238 D ortholog of Bordetella pertussis (BX470248) BP1928; ABC transporter permease 1840411..1841238 Bordetella bronchiseptica RB50 2662570 NP_888299.1 CDS BB1754 NC_002927.3 1841235 1842038 D ortholog of Bordetella pertussis (BX470248) BP1929; ABC transporter permease 1841235..1842038 Bordetella bronchiseptica RB50 2662576 NP_888300.1 CDS BB1755 NC_002927.3 1842035 1843126 D ortholog of Bordetella pertussis (BX470248) BP1930; ABC transporter ATP-binding protein 1842035..1843126 Bordetella bronchiseptica RB50 2659025 NP_888301.1 CDS BB1756 NC_002927.3 1843504 1844532 R ortholog of Bordetella pertussis (BX470248) BP1931; NADH-dependent flavin oxidoreductase complement(1843504..1844532) Bordetella bronchiseptica RB50 2662515 NP_888302.1 CDS BB1757 NC_002927.3 1844529 1845395 R ortholog of Bordetella pertussis (BX470248) BP1932; transcriptional regulator complement(1844529..1845395) Bordetella bronchiseptica RB50 2662565 NP_888303.1 CDS BB1758 NC_002927.3 1845404 1847524 R ortholog of Bordetella pertussis (BX470248) BP1933; pimeloyl-CoA synthetase complement(1845404..1847524) Bordetella bronchiseptica RB50 2662513 NP_888304.1 CDS BB1759 NC_002927.3 1847525 1848550 R ortholog of Bordetella pertussis (BX470248) BP1934; hypothetical protein complement(1847525..1848550) Bordetella bronchiseptica RB50 2662440 NP_888305.1 CDS BB1760 NC_002927.3 1848550 1848942 R ortholog of Bordetella pertussis (BX470248) BP1935; hypothetical protein complement(1848550..1848942) Bordetella bronchiseptica RB50 2662491 NP_888306.1 CDS BB1761 NC_002927.3 1848946 1849434 R ortholog of Bordetella pertussis (BX470248) BP1936; hypothetical protein complement(1848946..1849434) Bordetella bronchiseptica RB50 2662486 NP_888307.1 CDS BB1762 NC_002927.3 1849448 1849783 R ortholog of Bordetella pertussis (BX470248) BP1937; hypothetical protein complement(1849448..1849783) Bordetella bronchiseptica RB50 2662426 NP_888308.1 CDS BB1763 NC_002927.3 1849790 1850239 R ortholog of Bordetella pertussis (BX470248) BP1938; hypothetical protein complement(1849790..1850239) Bordetella bronchiseptica RB50 2662483 NP_888309.1 CDS BB1764 NC_002927.3 1850447 1850746 D ortholog of Bordetella pertussis (BX470248) BP1939; ArsR family transcriptional regulator 1850447..1850746 Bordetella bronchiseptica RB50 2662430 NP_888310.1 CDS nemA NC_002927.3 1850788 1851900 D ortholog of Bordetella pertussis (BX470248) BP1940; N-ethylmaleimide reductase 1850788..1851900 Bordetella bronchiseptica RB50 2662405 NP_888311.1 CDS BB1766 NC_002927.3 1851905 1852555 R ortholog of Bordetella pertussis (BX470248) BP1941; hypothetical protein complement(1851905..1852555) Bordetella bronchiseptica RB50 2662472 NP_888312.1 CDS hmsR NC_002927.3 1852536 1853795 R predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase complement(1852536..1853795) Bordetella bronchiseptica RB50 2662454 NP_888313.1 CDS hmsF NC_002927.3 1853799 1855904 R ortholog of Bordetella pertussis (BX470248) BP1943; hemin storage protein complement(1853799..1855904) Bordetella bronchiseptica RB50 2662388 NP_888314.1 CDS hmsH NC_002927.3 1855910 1857895 R ortholog of Bordetella pertussis (BX470248) BP1944; hemin storage protein complement(1855910..1857895) Bordetella bronchiseptica RB50 2662421 NP_888315.1 CDS BB1770 NC_002927.3 1858104 1858340 D ortholog of Bordetella pertussis (BX470248) BP1945; hypothetical protein 1858104..1858340 Bordetella bronchiseptica RB50 2662441 NP_888316.1 CDS BB1771 NC_002927.3 1858687 1859172 D ortholog of Bordetella pertussis (BX470248) BP1946; MarR family transcriptional regulator 1858687..1859172 Bordetella bronchiseptica RB50 2662375 NP_888317.1 CDS BB1772 NC_002927.3 1859488 1860696 D ortholog of Bordetella pertussis (BX470248) BP1948; branched-chain amino acid-binding protein 1859488..1860696 Bordetella bronchiseptica RB50 2662432 NP_888318.1 CDS BB1773 NC_002927.3 1860788 1862737 D ortholog of Bordetella pertussis (BX470248) BP1949; branched-chain amino acid ABCtransporter permease 1860788..1862737 Bordetella bronchiseptica RB50 2662346 NP_888319.1 CDS BB1774 NC_002927.3 1862734 1863510 D ortholog of Bordetella pertussis (BX470248) BP1950; branched-chain amino acid ABC transporter ATP-binding protein 1862734..1863510 Bordetella bronchiseptica RB50 2662376 NP_888320.1 CDS BB1775 NC_002927.3 1863507 1864277 D ortholog of Bordetella pertussis (BX470248) BP1951; branched-chain amino acid ABC transporter ATP-binding protein 1863507..1864277 Bordetella bronchiseptica RB50 2662338 NP_888321.1 CDS BB1776 NC_002927.3 1864431 1867271 R ortholog of Bordetella pertussis (BX470248) BP1952; cytochrome complement(1864431..1867271) Bordetella bronchiseptica RB50 2662320 NP_888322.1 CDS BB1777 NC_002927.3 1867268 1867756 R ortholog of Bordetella pertussis (BX470248) BP1953; oxidoreductase complement(1867268..1867756) Bordetella bronchiseptica RB50 2662311 NP_888323.1 CDS BB1778 NC_002927.3 1867866 1869017 R ortholog of Bordetella pertussis (BX470248) BP1954; monooxygenase complement(1867866..1869017) Bordetella bronchiseptica RB50 2661899 NP_888324.1 CDS maiA NC_002927.3 1869318 1870070 D ortholog of Bordetella pertussis (BX470248) BP1955; maleate cis-trans isomerase 1869318..1870070 Bordetella bronchiseptica RB50 2661674 NP_888325.1 CDS BB1780 NC_002927.3 1870090 1870911 D ortholog of Bordetella pertussis (BX470248) BP1956; alpha/beta hydrolase 1870090..1870911 Bordetella bronchiseptica RB50 2660199 NP_888326.1 CDS BB1781 NC_002927.3 1870939 1871970 D ortholog of Bordetella pertussis (BX470248) BP1957; hypothetical protein 1870939..1871970 Bordetella bronchiseptica RB50 2661880 NP_888327.1 CDS BB1782 NC_002927.3 1871986 1872603 D ortholog of Bordetella pertussis (BX470248) BP1958; isochorismatase 1871986..1872603 Bordetella bronchiseptica RB50 2660211 NP_888328.1 CDS BB1783 NC_002927.3 1872600 1874924 D ortholog of Bordetella pertussis (BX470248) BP1960; aldehyde dehydrogenase 1872600..1874924 Bordetella bronchiseptica RB50 2661743 NP_888329.1 CDS BB1784 NC_002927.3 1874975 1876381 D ortholog of Bordetella pertussis (BX470248) BP1961; flavocytochrome 1874975..1876381 Bordetella bronchiseptica RB50 2661801 NP_888330.1 CDS bfrI NC_002927.3 1876392 1878500 R ortholog of Bordetella pertussis (BX470248) BP1962; ferrisiderophore receptor complement(1876392..1878500) Bordetella bronchiseptica RB50 2660040 NP_888331.1 CDS BB1786 NC_002927.3 1878627 1879154 R ortholog of Bordetella pertussis (BX470248) BP1963; transcriptional regulator complement(1878627..1879154) Bordetella bronchiseptica RB50 2662078 NP_888332.1 CDS BB1787 NC_002927.3 1879248 1880213 D ortholog of Bordetella pertussis (BX470248) BP1965; hypothetical protein 1879248..1880213 Bordetella bronchiseptica RB50 2661663 NP_888333.1 CDS BB1788 NC_002927.3 1880230 1881795 D ortholog of Bordetella pertussis (BX470248) BP1966; sulfatase 1880230..1881795 Bordetella bronchiseptica RB50 2661187 NP_888334.1 CDS fadD NC_002927.3 1881817 1883490 R long-chain-fatty-acid--CoA ligase complement(1881817..1883490) Bordetella bronchiseptica RB50 2661194 NP_888335.1 CDS BB1790 NC_002927.3 1883499 1884047 R hypothetical protein complement(1883499..1884047) Bordetella bronchiseptica RB50 2661749 NP_888336.1 CDS BB1791 NC_002927.3 1884044 1885243 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(1884044..1885243) Bordetella bronchiseptica RB50 2659405 NP_888337.1 CDS BB1792 NC_002927.3 1885253 1887643 R 3-hydroxyacyl-CoA dehydrogenase oxidoreductase complement(1885253..1887643) Bordetella bronchiseptica RB50 2659165 NP_888338.1 CDS BB1793 NC_002927.3 1887714 1889018 R fatty acid transport system, membrane protein complement(1887714..1889018) Bordetella bronchiseptica RB50 2659390 NP_888339.1 CDS BB1794 NC_002927.3 1889090 1891033 R enoyl-CoA hydratase complement(1889090..1891033) Bordetella bronchiseptica RB50 2661655 NP_888340.1 CDS BB1795 NC_002927.3 1891030 1892322 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(1891030..1892322) Bordetella bronchiseptica RB50 2660224 NP_888341.1 CDS fadE NC_002927.3 1892335 1894683 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(1892335..1894683) Bordetella bronchiseptica RB50 2659716 NP_888342.1 CDS BB1797 NC_002927.3 1894709 1895374 R TetR family transcriptional regulator complement(1894709..1895374) Bordetella bronchiseptica RB50 2659753 NP_888343.1 CDS BB1798 NC_002927.3 1896537 1897301 D LuxR family transcriptional regulator 1896537..1897301 Bordetella bronchiseptica RB50 2660190 NP_888344.1 CDS BB1799 NC_002927.3 1897611 1898267 D ortholog of Bordetella pertussis (BX470248) BP1969; LuxR family transcriptional regulator 1897611..1898267 Bordetella bronchiseptica RB50 2659319 NP_888345.1 CDS pgm NC_002927.3 1898369 1899796 D ortholog of Bordetella pertussis (BX470248) BP1970; phosphoglucomutase 1898369..1899796 Bordetella bronchiseptica RB50 2659382 NP_888346.1 CDS pgi NC_002927.3 1899806 1901377 D ortholog of Bordetella pertussis (BX470248) BP1971; glucose-6-phosphate isomerase 1899806..1901377 Bordetella bronchiseptica RB50 2661198 NP_888347.1 CDS srpH NC_002927.3 1901560 1902513 D ortholog of Bordetella pertussis (BX470248) BP1972; serine acetyltransferase 1901560..1902513 Bordetella bronchiseptica RB50 2661759 NP_888348.1 CDS BB1803 NC_002927.3 1902575 1903801 D ortholog of Bordetella pertussis (BX470248) BP1973; hypothetical protein 1902575..1903801 Bordetella bronchiseptica RB50 2659378 NP_888349.1 CDS BB1804 NC_002927.3 1903814 1904638 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1903814..1904638 Bordetella bronchiseptica RB50 2660140 NP_888350.1 CDS BB1805 NC_002927.3 1904762 1905628 R ortholog of Bordetella pertussis (BX470248) BP1975; inositol monophosphatase complement(1904762..1905628) Bordetella bronchiseptica RB50 2661738 NP_888351.1 CDS gabD NC_002927.3 1905790 1907259 R ortholog of Bordetella pertussis (BX470248) BP1976; succinate-semialdehyde dehydrogenase complement(1905790..1907259) Bordetella bronchiseptica RB50 2661783 NP_888352.1 CDS goaG NC_002927.3 1907339 1908604 R ortholog of Bordetella pertussis (BX470248) BP1977; 4-aminobutyrate aminotransferase complement(1907339..1908604) Bordetella bronchiseptica RB50 2661647 NP_888353.1 CDS BB1808 NC_002927.3 1908801 1910234 D ortholog of Bordetella pertussis (BX470248) BP1978; GntR family transcriptional regulator 1908801..1910234 Bordetella bronchiseptica RB50 2660251 NP_888354.1 CDS BB1809 NC_002927.3 1910235 1911215 R ortholog of Bordetella pertussis (BX470248) BP1979; hypothetical protein complement(1910235..1911215) Bordetella bronchiseptica RB50 2660133 NP_888355.1 CDS BB1810 NC_002927.3 1911214 1913307 D ortholog of Bordetella pertussis (BX470248) BP1980; ATP-dependent DNA helicase 1911214..1913307 Bordetella bronchiseptica RB50 2660231 NP_888356.1 CDS BB1811 NC_002927.3 1913386 1914390 D ortholog of Bordetella pertussis (BX470248) BP1981; magnesium transporter 1913386..1914390 Bordetella bronchiseptica RB50 2660254 NP_888357.1 CDS BB1812 NC_002927.3 1914453 1915091 D ortholog of Bordetella pertussis (BX470248) BP1982; nuclease 1914453..1915091 Bordetella bronchiseptica RB50 2661627 NP_888358.1 CDS BB1813 NC_002927.3 1915188 1917437 D ortholog of Bordetella pertussis (BX470248) BP1983; Ser/Thr protein kinase 1915188..1917437 Bordetella bronchiseptica RB50 2660184 NP_888359.1 CDS BB1814 NC_002927.3 1917434 1918411 D ortholog of Bordetella pertussis (BX470248) BP1984; oligopeptide transport system permease 1917434..1918411 Bordetella bronchiseptica RB50 2660122 NP_888360.1 CDS BB1815 NC_002927.3 1918417 1919868 D ortholog of Bordetella pertussis (BX470248) BP1985; oligopeptide transport integral membrane protein 1918417..1919868 Bordetella bronchiseptica RB50 2661915 NP_888361.1 CDS BB1816 NC_002927.3 1919865 1921541 D ortholog of Bordetella pertussis (BX470248) BP1986; ABC transporter ATP-binding protein 1919865..1921541 Bordetella bronchiseptica RB50 2662256 NP_888362.1 CDS BB1817 NC_002927.3 1921590 1922141 R ortholog of Bordetella pertussis (BX470248) BP1987; MarR family transcriptional regulator complement(1921590..1922141) Bordetella bronchiseptica RB50 2663641 NP_888363.1 CDS BB1818 NC_002927.3 1922175 1923782 R ortholog of Bordetella pertussis (BX470248) BP1988; hypothetical protein complement(1922175..1923782) Bordetella bronchiseptica RB50 2663195 NP_888364.1 CDS BB1819 NC_002927.3 1924087 1925799 R ortholog of Bordetella pertussis (BX470248) BP1989; hypothetical protein complement(1924087..1925799) Bordetella bronchiseptica RB50 2663045 NP_888365.1 CDS BB1820 NC_002927.3 1926274 1927074 D ortholog of Bordetella pertussis (BX470248) BP1990; hypothetical protein 1926274..1927074 Bordetella bronchiseptica RB50 2662813 NP_888366.1 CDS BB1821 NC_002927.3 1927172 1927348 D ortholog of Bordetella pertussis (BX470248) BP1991; hypothetical protein 1927172..1927348 Bordetella bronchiseptica RB50 2662837 NP_888367.1 CDS BB1822 NC_002927.3 1927418 1927942 D ortholog of Bordetella pertussis (BX470248) BP1992; hypothetical protein 1927418..1927942 Bordetella bronchiseptica RB50 2663205 NP_888368.1 CDS BB1823 NC_002927.3 1927939 1928346 D ortholog of Bordetella pertussis (BX470248) BP1993; hypothetical protein 1927939..1928346 Bordetella bronchiseptica RB50 2662847 NP_888369.1 CDS BB1824 NC_002927.3 1928348 1928824 D ortholog of Bordetella pertussis (BX470248) BP1994; hypothetical protein 1928348..1928824 Bordetella bronchiseptica RB50 2663278 NP_888370.1 CDS BB1825 NC_002927.3 1928821 1929762 D ortholog of Bordetella pertussis (BX470248) BP1995; hypothetical protein 1928821..1929762 Bordetella bronchiseptica RB50 2663422 NP_888371.1 CDS BB1826 NC_002927.3 1929818 1931164 D ortholog of Bordetella pertussis (BX470248) BP1996; type II secretion system protein 1929818..1931164 Bordetella bronchiseptica RB50 2663672 NP_888372.1 CDS BB1827 NC_002927.3 1931161 1932510 D ortholog of Bordetella pertussis (BX470248) BP1997; hypothetical protein 1931161..1932510 Bordetella bronchiseptica RB50 2663082 NP_888373.1 CDS BB1828 NC_002927.3 1932519 1933874 D ortholog of Bordetella pertussis (BX470248) BP1998; type II secretion system protein 1932519..1933874 Bordetella bronchiseptica RB50 2663183 NP_888374.1 CDS BB1829 NC_002927.3 1933871 1934797 D ortholog of Bordetella pertussis (BX470248) BP1999; hypothetical protein 1933871..1934797 Bordetella bronchiseptica RB50 2663847 NP_888375.1 CDS BB1830 NC_002927.3 1934806 1935792 D ortholog of Bordetella pertussis (BX470248) BP2000; hypothetical protein 1934806..1935792 Bordetella bronchiseptica RB50 2662736 NP_888376.1 CDS BB1831 NC_002927.3 1935792 1936634 D ortholog of Bordetella pertussis (BX470248) BP2001; lipoprotein 1935792..1936634 Bordetella bronchiseptica RB50 2663516 NP_888377.1 CDS BB1832 NC_002927.3 1936653 1937120 D ortholog of Bordetella pertussis (BX470248) BP2002; hypothetical protein 1936653..1937120 Bordetella bronchiseptica RB50 2663621 NP_888378.1 CDS BB1833 NC_002927.3 1937134 1939377 D ortholog of Bordetella pertussis (BX470248) BP2003; hypothetical protein 1937134..1939377 Bordetella bronchiseptica RB50 2662939 NP_888379.1 CDS BB1834 NC_002927.3 1939399 1940790 D ortholog of Bordetella pertussis (BX470248) BP2004; response regulator 1939399..1940790 Bordetella bronchiseptica RB50 2663149 NP_888380.1 CDS BB1835 NC_002927.3 1940870 1941565 D ortholog of Bordetella pertussis (BX470248) BP2005; lipoprotein 1940870..1941565 Bordetella bronchiseptica RB50 2662709 NP_888381.1 CDS BB1836 NC_002927.3 1941638 1942120 D ortholog of Bordetella pertussis (BX470248) BP2006; hypothetical protein 1941638..1942120 Bordetella bronchiseptica RB50 2662766 NP_888382.1 CDS BB1837 NC_002927.3 1942178 1942882 D member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1942178..1942882 Bordetella bronchiseptica RB50 2663828 NP_888383.1 CDS BB1838 NC_002927.3 1943029 1943598 D ortholog of Bordetella pertussis (BX470248) BP2008; hypothetical protein 1943029..1943598 Bordetella bronchiseptica RB50 2663198 NP_888384.1 CDS BB1839 NC_002927.3 1943595 1944005 D ortholog of Bordetella pertussis (BX470248) BP2009; cytochrome c 1943595..1944005 Bordetella bronchiseptica RB50 2663005 NP_888385.1 CDS efp NC_002927.3 1944173 1944730 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1944173..1944730) Bordetella bronchiseptica RB50 2662923 NP_888386.1 CDS BB1841 NC_002927.3 1944873 1945985 R ortholog of Bordetella pertussis (BX470248) BP2011; hypothetical protein complement(1944873..1945985) Bordetella bronchiseptica RB50 2663454 NP_888387.1 CDS BB1842 NC_002927.3 1946001 1947203 R ortholog of Bordetella pertussis (BX470248) BP2012; hypothetical protein complement(1946001..1947203) Bordetella bronchiseptica RB50 2662864 NP_888388.1 CDS BB1843 NC_002927.3 1947310 1948149 D ortholog of Bordetella pertussis (BX470248) BP2013; hypothetical protein 1947310..1948149 Bordetella bronchiseptica RB50 2662708 NP_888389.1 CDS acnA NC_002927.3 1948258 1950963 R catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1948258..1950963) Bordetella bronchiseptica RB50 2663140 NP_888390.1 CDS BB1845 NC_002927.3 1951201 1951803 R ortholog of Bordetella pertussis (BX470248) BP2015; lipoprotein complement(1951201..1951803) Bordetella bronchiseptica RB50 2663130 NP_888391.1 CDS brfB NC_002927.3 1952080 1954284 D ortholog of Bordetella pertussis (BX470248) BP2016; ferric siderophore receptor 1952080..1954284 Bordetella bronchiseptica RB50 2663121 NP_888392.1 CDS BB1847 NC_002927.3 1954446 1955183 D ortholog of Bordetella pertussis (BX470248) BP2017; haloacid-type dehydrogenase 1954446..1955183 Bordetella bronchiseptica RB50 2662883 NP_888393.1 CDS BB1848 NC_002927.3 1955189 1955791 R ortholog of Bordetella pertussis (BX470248) BP2019; lipoprotein complement(1955189..1955791) Bordetella bronchiseptica RB50 2662733 NP_888394.1 CDS BB1849 NC_002927.3 1955793 1956131 R ortholog of Bordetella pertussis (BX470248) BP2020; hypothetical protein complement(1955793..1956131) Bordetella bronchiseptica RB50 2663279 NP_888395.1 CDS acnB NC_002927.3 1956526 1959117 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(1956526..1959117) Bordetella bronchiseptica RB50 2662865 NP_888396.1 CDS BB1851 NC_002927.3 1959184 1959927 D ortholog of Bordetella pertussis (BX470248) BP2022; exonuclease 1959184..1959927 Bordetella bronchiseptica RB50 2662839 NP_888397.1 CDS BB1852 NC_002927.3 1959940 1960326 D ortholog of Bordetella pertussis (BX470248) BP2023; hypothetical protein 1959940..1960326 Bordetella bronchiseptica RB50 2663595 NP_888398.1 CDS BB1853 NC_002927.3 1960333 1960623 R ortholog of Bordetella pertussis (BX470248) BP2024; hypothetical protein complement(1960333..1960623) Bordetella bronchiseptica RB50 2662969 NP_888399.1 CDS BB1854 NC_002927.3 1960759 1961058 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1960759..1961058 Bordetella bronchiseptica RB50 2663555 NP_888400.1 CDS BB1855 NC_002927.3 1961127 1962029 D ortholog of Bordetella pertussis (BX470248) BP2026; integral membrane protein 1961127..1962029 Bordetella bronchiseptica RB50 2663865 NP_888401.1 CDS BB1856 NC_002927.3 1962033 1962803 D ortholog of Bordetella pertussis (BX470248) BP2027; integral membrane protein 1962033..1962803 Bordetella bronchiseptica RB50 2663058 NP_888402.1 CDS BB1857 NC_002927.3 1963189 1963638 D ortholog of Bordetella pertussis (BX470248) BP2028; hypothetical protein 1963189..1963638 Bordetella bronchiseptica RB50 2663266 NP_888403.1 CDS BB1858 NC_002927.3 1963694 1964257 D hypothetical protein 1963694..1964257 Bordetella bronchiseptica RB50 2663824 NP_888404.1 CDS BB1859 NC_002927.3 1964271 1966691 R ortholog of Bordetella pertussis (BX470248) BP2029A; hypothetical protein complement(1964271..1966691) Bordetella bronchiseptica RB50 2663077 NP_888405.1 CDS BB1860 NC_002927.3 1966836 1967747 R ortholog of Bordetella pertussis (BX470248) BP2030; LysR family transcriptional regulator complement(1966836..1967747) Bordetella bronchiseptica RB50 2663822 NP_888406.1 CDS BB1861 NC_002927.3 1967973 1969490 D ortholog of Bordetella pertussis (BX470248) BP2031; acyl-CoA transferase 1967973..1969490 Bordetella bronchiseptica RB50 2663503 NP_888407.1 CDS BB1862 NC_002927.3 1969540 1970598 R ortholog of Bordetella pertussis (BX470248) BP2032; transmembrane transport protein complement(1969540..1970598) Bordetella bronchiseptica RB50 2663585 NP_888408.1 CDS BB1863 NC_002927.3 1970720 1971682 R ortholog of Bordetella pertussis (BX470248) BP2034; LysR family transcriptional regulator complement(1970720..1971682) Bordetella bronchiseptica RB50 2663558 NP_888409.1 CDS vag8 NC_002927.3 1979287 1982034 D ortholog of Bordetella pertussis (BX470248) BP2315; autotransporter 1979287..1982034 Bordetella bronchiseptica RB50 2663743 NP_888410.1 CDS maf NC_002927.3 1982053 1982676 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1982053..1982676) Bordetella bronchiseptica RB50 2662920 NP_888411.1 CDS BB1866 NC_002927.3 1982688 1983158 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(1982688..1983158) Bordetella bronchiseptica RB50 2662737 NP_888412.1 CDS BB1867 NC_002927.3 1983170 1983556 R ortholog of Bordetella pertussis (BX470248) BP2312; hypothetical protein complement(1983170..1983556) Bordetella bronchiseptica RB50 2663684 NP_888413.1 CDS nadD NC_002927.3 1983619 1984206 R ortholog of Bordetella pertussis (BX470248) BP2311; nicotinate-nucleotide adenylyltransferase complement(1983619..1984206) Bordetella bronchiseptica RB50 2662701 NP_888414.1 CDS hemF NC_002927.3 1984203 1985114 R catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase complement(1984203..1985114) Bordetella bronchiseptica RB50 2663574 NP_888415.1 CDS purD NC_002927.3 1985130 1986503 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(1985130..1986503) Bordetella bronchiseptica RB50 2663399 NP_888416.1 CDS BB1871 NC_002927.3 1986538 1987269 R ortholog of Bordetella pertussis (BX470248) BP2308; hypothetical protein complement(1986538..1987269) Bordetella bronchiseptica RB50 2663821 NP_888417.1 CDS BB1872 NC_002927.3 1987346 1988944 D ortholog of Bordetella pertussis (BX470248) BP2307; ATP-binding protein 1987346..1988944 Bordetella bronchiseptica RB50 2663781 NP_888418.1 CDS BB1873 NC_002927.3 1989014 1990384 R ortholog of Bordetella pertussis (BX470248) BP2305; aminotransferase complement(1989014..1990384) Bordetella bronchiseptica RB50 2663409 NP_888419.1 CDS BB1874 NC_002927.3 1990521 1991453 D ortholog of Bordetella pertussis (BX470248) BP2304; 2-hydroxyacid dehydrogenase 1990521..1991453 Bordetella bronchiseptica RB50 2663586 NP_888420.1 CDS BB1875 NC_002927.3 1991464 1992957 R ortholog of Bordetella pertussis (BX470248) BP2303; aldehyde dehydrogenase complement(1991464..1992957) Bordetella bronchiseptica RB50 2663501 NP_888421.1 CDS BB1876 NC_002927.3 1992954 1993877 R ortholog of Bordetella pertussis (BX470248) BP2302; hypothetical protein complement(1992954..1993877) Bordetella bronchiseptica RB50 2663859 NP_888422.1 CDS BB1877 NC_002927.3 1993880 1995142 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(1993880..1995142) Bordetella bronchiseptica RB50 2663734 NP_888423.1 CDS BB1878 NC_002927.3 1995162 1996226 R ortholog of Bordetella pertussis (BX470248) BP2300; acetylpolyamine aminohydrolase complement(1995162..1996226) Bordetella bronchiseptica RB50 2659974 NP_888424.1 CDS BB1879 NC_002927.3 1996249 1996572 R ortholog of Bordetella pertussis (BX470248) BP2299; hypothetical protein complement(1996249..1996572) Bordetella bronchiseptica RB50 2661497 NP_888425.1 CDS BB1880 NC_002927.3 1996569 1997843 R ortholog of Bordetella pertussis (BX470248) BP2298; aminobutyrate aminotransferase complement(1996569..1997843) Bordetella bronchiseptica RB50 2661498 NP_888426.1 CDS BB1881 NC_002927.3 1997884 1999521 R ortholog of Bordetella pertussis (BX470248) BP2296; ABC transporter ATP-binding protein complement(1997884..1999521) Bordetella bronchiseptica RB50 2661581 NP_888427.1 CDS BB1882 NC_002927.3 1999526 2000365 R ortholog of Bordetella pertussis (BX470248) BP2295; integral membrane transport protein complement(1999526..2000365) Bordetella bronchiseptica RB50 2660886 NP_888428.1 CDS BB1883 NC_002927.3 2000362 2001378 R ortholog of Bordetella pertussis (BX470248) BP2294; integral membrane transport protein complement(2000362..2001378) Bordetella bronchiseptica RB50 2660855 NP_888429.1 CDS BB1884 NC_002927.3 2001486 2003060 R ortholog of Bordetella pertussis (BX470248) BP2293; ABC transporter substrate-binding protein complement(2001486..2003060) Bordetella bronchiseptica RB50 2660348 NP_888430.1 CDS BB1885 NC_002927.3 2003480 2005024 D ortholog of Bordetella pertussis (BX470248) BP2292; transcriptional regulator 2003480..2005024 Bordetella bronchiseptica RB50 2661542 NP_888431.1 CDS BB1886 NC_002927.3 2005129 2006196 D ortholog of Bordetella pertussis (BX470248) BP2291; tartrate dehydrogenase 2005129..2006196 Bordetella bronchiseptica RB50 2662604 NP_888432.1 CDS BB1887 NC_002927.3 2006215 2007801 R ortholog of Bordetella pertussis (BX470248) BP2290; multidrug resistance protein complement(2006215..2007801) Bordetella bronchiseptica RB50 2662631 NP_888433.1 CDS BB1888 NC_002927.3 2007798 2009012 R ortholog of Bordetella pertussis (BX470248) BP2289; multidrug resistance protein complement(2007798..2009012) Bordetella bronchiseptica RB50 2661449 NP_888434.1 CDS BB1889 NC_002927.3 2009009 2010430 R ortholog of Bordetella pertussis (BX470248) BP2287; outer membrane protein complement(2009009..2010430) Bordetella bronchiseptica RB50 2661342 NP_888435.1 CDS BB1890 NC_002927.3 2010554 2011042 R ortholog of Bordetella pertussis (BX470248) BP2286; MarR family transcriptional regulator complement(2010554..2011042) Bordetella bronchiseptica RB50 2659952 NP_888436.1 CDS BB1891 NC_002927.3 2011102 2011959 R ortholog of Bordetella pertussis (BX470248) BP2285; hypothetical protein complement(2011102..2011959) Bordetella bronchiseptica RB50 2661362 NP_888437.1 CDS BB1892 NC_002927.3 2012022 2012972 D ortholog of Bordetella pertussis (BX470248) BP2284; hypothetical protein 2012022..2012972 Bordetella bronchiseptica RB50 2661517 NP_888438.1 CDS qor NC_002927.3 2013035 2014024 D ortholog of Bordetella pertussis (BX470248) BP2283; quinone oxidoreductase 2013035..2014024 Bordetella bronchiseptica RB50 2660551 NP_888439.1 CDS BB1894 NC_002927.3 2014100 2014981 R metalloprotease; heat shock protein HtpX complement(2014100..2014981) Bordetella bronchiseptica RB50 2660867 NP_888440.1 CDS BB1895 NC_002927.3 2015135 2015989 D ortholog of Bordetella pertussis (BX470248) BP2281; integral membrane protein 2015135..2015989 Bordetella bronchiseptica RB50 2661622 NP_888441.1 CDS BB1896 NC_002927.3 2016042 2016893 D ortholog of Bordetella pertussis (BX470248) BP2280; sulfurtransferase 2016042..2016893 Bordetella bronchiseptica RB50 2659828 NP_888442.1 CDS BB1897 NC_002927.3 2016910 2017479 R ortholog of Bordetella pertussis (BX470248) BP2279; hypothetical protein complement(2016910..2017479) Bordetella bronchiseptica RB50 2660369 NP_888443.1 CDS BB1898 NC_002927.3 2017510 2018340 R ortholog of Bordetella pertussis (BX470248) BP2278; transcriptional regulator complement(2017510..2018340) Bordetella bronchiseptica RB50 2660947 NP_888444.1 CDS BB1899 NC_002927.3 2018533 2019609 D ortholog of Bordetella pertussis (BX470248) BP2277; ABC transporter ATP-binding protein 2018533..2019609 Bordetella bronchiseptica RB50 2660647 NP_888445.1 CDS BB1900 NC_002927.3 2019674 2021368 D ortholog of Bordetella pertussis (BX470248) BP2276; ABC transporter permease 2019674..2021368 Bordetella bronchiseptica RB50 2660364 NP_888446.1 CDS BB1901 NC_002927.3 2021385 2022215 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 2021385..2022215 Bordetella bronchiseptica RB50 2662622 NP_888447.1 CDS BB1902 NC_002927.3 2022244 2023266 D ortholog of Bordetella pertussis (BX470248) BP2274; hypothetical protein 2022244..2023266 Bordetella bronchiseptica RB50 2661505 NP_888448.1 CDS BB1903 NC_002927.3 2023331 2024458 D ortholog of Bordetella pertussis (BX470248) BP2273; secreted oxidoreductase 2023331..2024458 Bordetella bronchiseptica RB50 2661503 NP_888449.1 CDS BB1904 NC_002927.3 2024678 2025211 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(2024678..2025211) Bordetella bronchiseptica RB50 2661559 NP_888450.1 CDS BB1905 NC_002927.3 2025420 2028362 D TonB-dependent receptor 2025420..2028362 Bordetella bronchiseptica RB50 2661548 NP_888451.1 CDS BB1906 NC_002927.3 2028427 2029719 R ortholog of Bordetella pertussis (BX470248) BP2804; iron-sulfur protein complement(2028427..2029719) Bordetella bronchiseptica RB50 2661593 NP_888452.1 CDS BB1907 NC_002927.3 2029726 2030736 R ortholog of Bordetella pertussis (BX470248) BP2803; integral membrane protein complement(2029726..2030736) Bordetella bronchiseptica RB50 2660317 NP_888453.1 CDS BB1908 NC_002927.3 2030907 2031872 R ortholog of Bordetella pertussis (BX470248) BP2802; hypothetical protein complement(2030907..2031872) Bordetella bronchiseptica RB50 2661579 NP_888454.1 CDS BB1909 NC_002927.3 2031990 2032877 D ortholog of Bordetella pertussis (BX470248) BP2801; transcriptional regulator 2031990..2032877 Bordetella bronchiseptica RB50 2661616 NP_888455.1 CDS xseB NC_002927.3 2032964 2033230 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 2032964..2033230 Bordetella bronchiseptica RB50 2660586 NP_888456.1 CDS BB1911 NC_002927.3 2033235 2034146 D ortholog of Bordetella pertussis (BX470248) BP2799; geranyltranstransferase 2033235..2034146 Bordetella bronchiseptica RB50 2660948 NP_888457.1 CDS dxs NC_002927.3 2034196 2036058 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2034196..2036058 Bordetella bronchiseptica RB50 2660472 NP_888458.1 CDS BB1913 NC_002927.3 2036215 2037012 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase 2036215..2037012 Bordetella bronchiseptica RB50 2661835 NP_888459.2 CDS rpsF NC_002927.3 2037236 2037616 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2037236..2037616 Bordetella bronchiseptica RB50 2660439 NP_888460.1 CDS priB NC_002927.3 2037664 2037987 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 2037664..2037987 Bordetella bronchiseptica RB50 2660690 NP_888461.1 CDS rpsR NC_002927.3 2038080 2038352 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 2038080..2038352 Bordetella bronchiseptica RB50 2660691 NP_888462.1 CDS rplI NC_002927.3 2038368 2038823 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 2038368..2038823 Bordetella bronchiseptica RB50 2660557 NP_888463.1 CDS BB1918 NC_002927.3 2038940 2039776 D ortholog of Bordetella pertussis (BX470248) BP2792; hypothetical protein 2038940..2039776 Bordetella bronchiseptica RB50 2660512 NP_888464.1 CDS dnaB NC_002927.3 2039773 2041146 D unwinds double stranded DNA; replicative DNA helicase 2039773..2041146 Bordetella bronchiseptica RB50 2660474 NP_888465.1 CDS BB1920 NC_002927.3 2041167 2042135 R ortholog of Bordetella pertussis (BX470248) BP2790; hypothetical protein complement(2041167..2042135) Bordetella bronchiseptica RB50 2661415 NP_888466.1 CDS BB1921 NC_002927.3 2042215 2043192 R ortholog of Bordetella pertussis (BX470248) BP2789; hypothetical protein complement(2042215..2043192) Bordetella bronchiseptica RB50 2661366 NP_888467.1 CDS BB1922 NC_002927.3 2043297 2044976 R ortholog of Bordetella pertussis (BX470248) BP2788; hypothetical protein complement(2043297..2044976) Bordetella bronchiseptica RB50 2660734 NP_888468.1 CDS BB1923 NC_002927.3 2045034 2045498 R ortholog of Bordetella pertussis (BX470248) BP2787; hypothetical protein complement(2045034..2045498) Bordetella bronchiseptica RB50 2660794 NP_888469.1 CDS BB1924 NC_002927.3 2045501 2045953 R ortholog of Bordetella pertussis (BX470248) BP2786; hypothetical protein complement(2045501..2045953) Bordetella bronchiseptica RB50 2660322 NP_888470.1 CDS BB1925 NC_002927.3 2046050 2047357 D ortholog of Bordetella pertussis (BX470248) BP2785; aminotransferase 2046050..2047357 Bordetella bronchiseptica RB50 2660537 NP_888471.1 CDS BB1926 NC_002927.3 2047354 2048658 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 2047354..2048658 Bordetella bronchiseptica RB50 2660528 NP_888472.1 CDS thrC NC_002927.3 2048655 2050061 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2048655..2050061 Bordetella bronchiseptica RB50 2660608 NP_888473.1 CDS BB1928 NC_002927.3 2050275 2050496 D ortholog of Bordetella pertussis (BX470248) BP2782; lipoprotein 2050275..2050496 Bordetella bronchiseptica RB50 2660657 NP_888474.1 CDS fbp NC_002927.3 2050603 2051622 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(2050603..2051622) Bordetella bronchiseptica RB50 2660720 NP_888475.1 CDS pepN NC_002927.3 2051632 2054340 R ortholog of Bordetella pertussis (BX470248) BP0869; aminopeptidase N complement(2051632..2054340) Bordetella bronchiseptica RB50 2660771 NP_888476.1 CDS BB1931 NC_002927.3 2054488 2055126 D ortholog of Bordetella pertussis (BX470248) BP0870; hypothetical protein 2054488..2055126 Bordetella bronchiseptica RB50 2659978 NP_888477.1 CDS bph3 NC_002927.3 2055225 2055596 R ortholog of Bordetella pertussis (BX470248) bph3; DNA-binding protein (histone) complement(2055225..2055596) Bordetella bronchiseptica RB50 2661394 NP_888478.1 CDS BB1933 NC_002927.3 2055721 2056551 D ortholog of Bordetella pertussis (BX470248) BP2910; hydrolase 2055721..2056551 Bordetella bronchiseptica RB50 2661395 NP_888479.1 CDS BB1934 NC_002927.3 2056562 2058022 D ortholog of Bordetella pertussis (BX470248) BP2909; hypothetical protein 2056562..2058022 Bordetella bronchiseptica RB50 2661407 NP_888480.1 CDS aroG NC_002927.3 2058279 2059352 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 2058279..2059352 Bordetella bronchiseptica RB50 2661424 NP_888481.1 CDS fhaL NC_002927.3 2059374 2072030 R ortholog of Bordetella pertussis (BX470248) BP2907; adhesin complement(2059374..2072030) Bordetella bronchiseptica RB50 2661608 NP_888482.1 CDS BB1937 NC_002927.3 2072160 2073569 D ortholog of Bordetella pertussis (BX470248) BP2906; oxidoreductase 2072160..2073569 Bordetella bronchiseptica RB50 2659536 NP_888483.1 CDS glcD NC_002927.3 2073704 2075203 D ortholog of Bordetella pertussis (BX470248) BP2905; glycolate oxidase subunit 2073704..2075203 Bordetella bronchiseptica RB50 2659598 NP_888484.1 CDS glcE NC_002927.3 2075215 2076324 D ortholog of Bordetella pertussis (BX470248) BP2904; glycolate oxidase FAD binding subunit 2075215..2076324 Bordetella bronchiseptica RB50 2660807 NP_888485.1 CDS glcF NC_002927.3 2076357 2077586 D ortholog of Bordetella pertussis (BX470248) BP2903; glycolate oxidase iron-sulfur subunit 2076357..2077586 Bordetella bronchiseptica RB50 2660818 NP_888486.1 CDS BB1941 NC_002927.3 2077577 2078488 R ortholog of Bordetella pertussis (BX470248) BP2902; hypothetical protein complement(2077577..2078488) Bordetella bronchiseptica RB50 2661462 NP_888487.2 CDS bfeA NC_002927.3 2078491 2080704 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(2078491..2080704) Bordetella bronchiseptica RB50 2661564 NP_888488.1 CDS BB1943 NC_002927.3 2080880 2081890 D ortholog of Bordetella pertussis (BX470248) BP2900; transcriptional regulator 2080880..2081890 Bordetella bronchiseptica RB50 2659933 NP_888489.1 CDS pntB NC_002927.3 2081934 2083370 R ortholog of Bordetella pertussis (BX470248) BP2899; NAD(P) transhydrogenase subunit beta complement(2081934..2083370) Bordetella bronchiseptica RB50 2660584 NP_888490.1 CDS pntAB NC_002927.3 2083367 2083684 R ortholog of Bordetella pertussis (BX470248) BP2898; NAD(P) transhydrogenase subunit alpha part 2 complement(2083367..2083684) Bordetella bronchiseptica RB50 2660864 NP_888491.1 CDS pntaA NC_002927.3 2083686 2084804 R ortholog of Bordetella pertussis (BX470248) BP2897; NAD(P) transhydrogenase subunit alpha part 1 complement(2083686..2084804) Bordetella bronchiseptica RB50 2660905 NP_888492.1 CDS BB1947 NC_002927.3 2085059 2085934 R ortholog of Bordetella pertussis (BX470248) BP2896; hydrolase complement(2085059..2085934) Bordetella bronchiseptica RB50 2659584 NP_888493.1 CDS BB1948 NC_002927.3 2085994 2086980 R ortholog of Bordetella pertussis (BX470248) BP2895; hypothetical protein complement(2085994..2086980) Bordetella bronchiseptica RB50 2659585 NP_888494.1 CDS BB1949 NC_002927.3 2087152 2088072 D ortholog of Bordetella pertussis (BX470248) BP2894; LysR family transcriptional regulator 2087152..2088072 Bordetella bronchiseptica RB50 2660511 NP_888495.1 CDS mnmA NC_002927.3 2088085 2089200 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2088085..2089200 Bordetella bronchiseptica RB50 2661114 NP_888496.1 CDS BB1951 NC_002927.3 2089301 2090119 D ortholog of Bordetella pertussis (BX470248) BP2892; integral membrane protein 2089301..2090119 Bordetella bronchiseptica RB50 2661064 NP_888497.1 CDS BB1952 NC_002927.3 2090217 2090828 R ortholog of Bordetella pertussis (BX470248) BP2891; hypothetical protein complement(2090217..2090828) Bordetella bronchiseptica RB50 2661067 NP_888498.1 CDS purB NC_002927.3 2090943 2092364 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2090943..2092364 Bordetella bronchiseptica RB50 2662109 NP_888499.1 CDS BB1954 NC_002927.3 2092427 2092885 D ortholog of Bordetella pertussis (BX470248) BP2889; c'cytochrome 2092427..2092885 Bordetella bronchiseptica RB50 2659718 NP_888500.1 CDS BB1955 NC_002927.3 2092970 2093665 R ortholog of Bordetella pertussis (BX470248) BP2888; integral membrane protein complement(2092970..2093665) Bordetella bronchiseptica RB50 2659373 NP_888501.1 CDS BB1956 NC_002927.3 2093727 2094008 R ortholog of Bordetella pertussis (BX470248) BP2887; hypothetical protein complement(2093727..2094008) Bordetella bronchiseptica RB50 2660044 NP_888502.1 CDS BB1957 NC_002927.3 2094520 2095323 D ortholog of Bordetella pertussis (BX470248) BP2886; lipoprotein 2094520..2095323 Bordetella bronchiseptica RB50 2660045 NP_888503.1 CDS BB1958 NC_002927.3 2095368 2096444 D ortholog of Bordetella pertussis (BX470248) BP2885; hypothetical protein 2095368..2096444 Bordetella bronchiseptica RB50 2660298 NP_888504.1 CDS BB1959 NC_002927.3 2096526 2097173 D ortholog of Bordetella pertussis (BX470248) BP3506; hypothetical protein 2096526..2097173 Bordetella bronchiseptica RB50 2661841 NP_888505.1 CDS BB1960 NC_002927.3 2097188 2098615 R ortholog of Bordetella pertussis (BX470248) BP3507; hypothetical protein complement(2097188..2098615) Bordetella bronchiseptica RB50 2660666 NP_888506.1 CDS BB1961 NC_002927.3 2098781 2099386 R ortholog of Bordetella pertussis (BX470248) BP3508; hypothetical protein complement(2098781..2099386) Bordetella bronchiseptica RB50 2660318 NP_888507.1 CDS BB1962 NC_002927.3 2099422 2099745 D ortholog of Bordetella pertussis (BX470248) BP3509; hypothetical protein 2099422..2099745 Bordetella bronchiseptica RB50 2659765 NP_888508.1 CDS BB1963 NC_002927.3 2099767 2100033 R ortholog of Bordetella pertussis (BX470248) BP3511; hypothetical protein complement(2099767..2100033) Bordetella bronchiseptica RB50 2659766 NP_888509.1 CDS BB1964 NC_002927.3 2100363 2100599 D ortholog of Bordetella pertussis (BX470248) BP3512; hypothetical protein 2100363..2100599 Bordetella bronchiseptica RB50 2663895 NP_888510.1 CDS BB1965 NC_002927.3 2100616 2100873 D ortholog of Bordetella pertussis (BX470248) BP3513; hypothetical protein 2100616..2100873 Bordetella bronchiseptica RB50 2663896 NP_888511.1 CDS BB1966 NC_002927.3 2101145 2102470 R ortholog of Bordetella pertussis (BX470248) BP3514; hypothetical protein complement(2101145..2102470) Bordetella bronchiseptica RB50 2661166 NP_888512.1 CDS BB1967 NC_002927.3 2102492 2103466 R ortholog of Bordetella pertussis (BX470248) BP3515; hypothetical protein complement(2102492..2103466) Bordetella bronchiseptica RB50 2658989 NP_888513.1 CDS BB1968 NC_002927.3 2103798 2104397 D ortholog of Bordetella pertussis (BX470248) BP3517; hypothetical protein 2103798..2104397 Bordetella bronchiseptica RB50 2662024 NP_888514.1 CDS BB1969 NC_002927.3 2104385 2105815 D ortholog of Bordetella pertussis (BX470248) BP3518; phospholipase D 2104385..2105815 Bordetella bronchiseptica RB50 2661952 NP_888515.1 CDS BB1970 NC_002927.3 2105825 2107486 R ortholog of Bordetella pertussis (BX470248) BP3521; hypothetical protein complement(2105825..2107486) Bordetella bronchiseptica RB50 2661059 NP_888516.1 CDS BB1971 NC_002927.3 2107561 2108868 R ortholog of Bordetella pertussis (BX470248) BP3522; hypothetical protein complement(2107561..2108868) Bordetella bronchiseptica RB50 2661094 NP_888517.1 CDS BB1972 NC_002927.3 2108929 2109876 R ortholog of Bordetella pertussis (BX470248) BP3523; hypothetical protein complement(2108929..2109876) Bordetella bronchiseptica RB50 2660397 NP_888518.1 CDS BB1973 NC_002927.3 2110001 2110444 D ortholog of Bordetella pertussis (BX470248) BP3524; acetyltransferase 2110001..2110444 Bordetella bronchiseptica RB50 2661115 NP_888519.1 CDS BB1974 NC_002927.3 2110784 2111395 D ortholog of Bordetella pertussis (BX470248) BP3525; hypothetical protein 2110784..2111395 Bordetella bronchiseptica RB50 2659648 NP_888520.1 CDS rnr NC_002927.3 2111957 2114377 D ortholog of Bordetella pertussis (BX470248) BP3526; ribonuclease R 2111957..2114377 Bordetella bronchiseptica RB50 2661496 NP_888521.1 CDS BB1976 NC_002927.3 2114502 2115239 D ortholog of Bordetella pertussis (BX470248) BP3527; tRNA/rRNA methyltransferase 2114502..2115239 Bordetella bronchiseptica RB50 2661484 NP_888522.1 CDS BB1977 NC_002927.3 2115293 2116537 D ortholog of Bordetella pertussis (BX470248) BP3528; hypothetical protein 2115293..2116537 Bordetella bronchiseptica RB50 2659134 NP_888523.1 CDS BB1978 NC_002927.3 2116578 2117258 D ortholog of Bordetella pertussis (BX470248) BP3529; hydroxylase 2116578..2117258 Bordetella bronchiseptica RB50 2661621 NP_888524.1 CDS hupB NC_002927.3 2117579 2117851 D ortholog of Bordetella pertussis (BX470248) BP3530; DNA-binding protein HU-beta 2117579..2117851 Bordetella bronchiseptica RB50 2659071 NP_888525.1 CDS tonB NC_002927.3 2118348 2119154 D ortholog of Bordetella pertussis (BX470248) BP3531; siderophore-mediated iron transport protein 2118348..2119154 Bordetella bronchiseptica RB50 2663930 NP_888526.1 CDS exbB NC_002927.3 2119156 2120133 D ortholog of Bordetella pertussis (BX470248) BP3532; MotA/TolQ/ExbB proton channel family protein 2119156..2120133 Bordetella bronchiseptica RB50 2660730 NP_888527.1 CDS exbD NC_002927.3 2120133 2120600 D ortholog of Bordetella pertussis (BX470248) BP3533; biopolymer transport protein ExbD/TolR 2120133..2120600 Bordetella bronchiseptica RB50 2660552 NP_888528.1 CDS basR NC_002927.3 2120683 2121354 D ortholog of Bordetella pertussis (BX470248) BP3534; response regulator protein 2120683..2121354 Bordetella bronchiseptica RB50 2660587 NP_888529.1 CDS BB1984 NC_002927.3 2121413 2122531 D ortholog of Bordetella pertussis (BX470248) BP3535; sensor kinase 2121413..2122531 Bordetella bronchiseptica RB50 2660834 NP_888530.1 CDS kup NC_002927.3 2122528 2124438 D ortholog of Bordetella pertussis (BX470248) BP3536; potassium uptake protein 2122528..2124438 Bordetella bronchiseptica RB50 2661103 NP_888531.1 CDS argG NC_002927.3 2124523 2125860 R catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase complement(2124523..2125860) Bordetella bronchiseptica RB50 2661205 NP_888532.1 CDS argF NC_002927.3 2126011 2126952 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(2126011..2126952) Bordetella bronchiseptica RB50 2659266 NP_888533.1 CDS argD NC_002927.3 2127004 2128185 R catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase complement(2127004..2128185) Bordetella bronchiseptica RB50 2661768 NP_888534.1 CDS BB1989 NC_002927.3 2128396 2128686 D ortholog of Bordetella pertussis (BX470248) BP3540; hypothetical protein 2128396..2128686 Bordetella bronchiseptica RB50 2659060 NP_888535.1 CDS BB1990 NC_002927.3 2128691 2129599 R ortholog of Bordetella pertussis (BX470248) BP3541; LysR family transcriptional regulator complement(2128691..2129599) Bordetella bronchiseptica RB50 2659061 NP_888536.1 CDS BB1991 NC_002927.3 2129663 2130436 R ortholog of Bordetella pertussis (BX470248) BP3542; short chain dehydrogenase complement(2129663..2130436) Bordetella bronchiseptica RB50 2662208 NP_888537.1 CDS BB1992 NC_002927.3 2130583 2131536 R ortholog of Bordetella pertussis (BX470248) BP3543; D-isomer specific 2-hydroxyacid dehydrogenase complement(2130583..2131536) Bordetella bronchiseptica RB50 2659174 NP_888538.1 CDS BB1993 NC_002927.3 2131639 2132610 R ortholog of Bordetella pertussis (BX470248) BP3544; lipoprotein complement(2131639..2132610) Bordetella bronchiseptica RB50 2658972 NP_888539.1 CDS BB1994 NC_002927.3 2132692 2132883 R ortholog of Bordetella pertussis (BX470248) BP3545; hypothetical protein complement(2132692..2132883) Bordetella bronchiseptica RB50 2661944 NP_888540.1 CDS BB1995 NC_002927.3 2133092 2134009 D ortholog of Bordetella pertussis (BX470248) BP3546; hypothetical protein 2133092..2134009 Bordetella bronchiseptica RB50 2661945 NP_888541.1 CDS BB1996 NC_002927.3 2134072 2134842 D ortholog of Bordetella pertussis (BX470248) BP3547; GntR family transcriptional regulator 2134072..2134842 Bordetella bronchiseptica RB50 2661471 NP_888542.1 CDS BB1997 NC_002927.3 2134899 2136011 D ortholog of Bordetella pertussis (BX470248) BP2780; malate dehydrogenase 2134899..2136011 Bordetella bronchiseptica RB50 2661461 NP_888543.1 CDS BB1998 NC_002927.3 2136060 2137805 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2136060..2137805 Bordetella bronchiseptica RB50 2661458 NP_888544.1 CDS BB1999 NC_002927.3 2137851 2138840 D ortholog of Bordetella pertussis (BX470248) BP2775; hypothetical protein 2137851..2138840 Bordetella bronchiseptica RB50 2659903 NP_888545.1 CDS BB2000 NC_002927.3 2138891 2139667 D cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase 2138891..2139667 Bordetella bronchiseptica RB50 2661231 NP_888546.1 CDS rpsT NC_002927.3 2139785 2140048 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(2139785..2140048) Bordetella bronchiseptica RB50 2660344 NP_888547.1 CDS BB2002 NC_002927.3 2140149 2141153 R ortholog of Bordetella pertussis (BX470248) BP2772; hypothetical protein complement(2140149..2141153) Bordetella bronchiseptica RB50 2661472 NP_888548.1 CDS BB2003 NC_002927.3 2141363 2142955 R ortholog of Bordetella pertussis (BX470248) BP2771; integral membrane protein complement(2141363..2142955) Bordetella bronchiseptica RB50 2660026 NP_888549.1 CDS BB2004 NC_002927.3 2142981 2143739 R ortholog of Bordetella pertussis (BX470248) BP2770; short-chain dehydrogenase complement(2142981..2143739) Bordetella bronchiseptica RB50 2661445 NP_888550.1 CDS adk NC_002927.3 2143831 2144487 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(2143831..2144487) Bordetella bronchiseptica RB50 2660718 NP_888551.1 CDS BB2006 NC_002927.3 2144578 2145342 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(2144578..2145342) Bordetella bronchiseptica RB50 2659609 NP_888552.1 CDS BB2007 NC_002927.3 2145352 2145540 R ortholog of Bordetella pertussis (BX470248) BP2767; hypothetical protein complement(2145352..2145540) Bordetella bronchiseptica RB50 2660704 NP_888553.1 CDS lpxK NC_002927.3 2145596 2146639 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(2145596..2146639) Bordetella bronchiseptica RB50 2660736 NP_888554.1 CDS BB2009 NC_002927.3 2146636 2147049 R ortholog of Bordetella pertussis (BX470248) BP2765; biopolymer transport protein complement(2146636..2147049) Bordetella bronchiseptica RB50 2660302 NP_888555.1 CDS BB2010 NC_002927.3 2147046 2147666 R ortholog of Bordetella pertussis (BX470248) BP2764; biopolymer transport protein complement(2147046..2147666) Bordetella bronchiseptica RB50 2660314 NP_888556.1 CDS xseA NC_002927.3 2148016 2149407 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2148016..2149407 Bordetella bronchiseptica RB50 2659970 NP_888557.1 CDS sodB NC_002927.3 2149480 2150058 D ortholog of Bordetella pertussis (BX470248) BP2761; superoxide dismutase 2149480..2150058 Bordetella bronchiseptica RB50 2660687 NP_888558.1 CDS BB2014 NC_002927.3 2151689 2152894 D catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 2151689..2152894 Bordetella bronchiseptica RB50 2661825 NP_888559.1 CDS BB2015 NC_002927.3 2152994 2153512 R ortholog of Bordetella pertussis (BX470248) BP2758; hypothetical protein complement(2152994..2153512) Bordetella bronchiseptica RB50 2659565 NP_888560.1 CDS BB2016 NC_002927.3 2153607 2153852 R ortholog of Bordetella pertussis (BX470248) BP2757; cold-shock protein complement(2153607..2153852) Bordetella bronchiseptica RB50 2662591 NP_888561.1 CDS clpS NC_002927.3 2154080 2154394 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2154080..2154394 Bordetella bronchiseptica RB50 2661953 NP_888562.1 CDS BB2018 NC_002927.3 2154493 2159673 D ortholog of Bordetella pertussis (BX470248) BP2755; hypothetical protein 2154493..2159673 Bordetella bronchiseptica RB50 2661305 NP_888563.1 CDS pbp NC_002927.3 2159670 2161838 D ortholog of Bordetella pertussis (BX470248) BP2754; penicillin-binding protein 2159670..2161838 Bordetella bronchiseptica RB50 2661014 NP_888564.1 CDS clpA NC_002927.3 2161858 2164206 D ortholog of Bordetella pertussis (BX470248) BP2753; ATP-dependent Clp protease ATP-binding 2161858..2164206 Bordetella bronchiseptica RB50 2661120 NP_888565.1 CDS BB2021 NC_002927.3 2164211 2165530 D ortholog of Bordetella pertussis (BX470248) BP2752; hypothetical protein 2164211..2165530 Bordetella bronchiseptica RB50 2660782 NP_888566.1 CDS BB2022 NC_002927.3 2165549 2167222 D ortholog of Bordetella pertussis (BX470248) BP2751; hypothetical protein 2165549..2167222 Bordetella bronchiseptica RB50 2659510 NP_888567.1 CDS BB2023 NC_002927.3 2167227 2167895 D ortholog of Bordetella pertussis (BX470248) BP2750; lipoprotein 2167227..2167895 Bordetella bronchiseptica RB50 2659916 NP_888568.1 CDS putA NC_002927.3 2168052 2171873 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 2168052..2171873 Bordetella bronchiseptica RB50 2661991 NP_888569.1 CDS BB2025 NC_002927.3 2172126 2173271 D ortholog of Bordetella pertussis (BX470248) BP2747; ABC transport substrate-binding protein 2172126..2173271 Bordetella bronchiseptica RB50 2663934 NP_888570.1 CDS BB2026 NC_002927.3 2173421 2174350 D ortholog of Bordetella pertussis (BX470248) BP2746; ABC transporter 2173421..2174350 Bordetella bronchiseptica RB50 2661615 NP_888571.1 CDS BB2027 NC_002927.3 2174347 2175435 D ortholog of Bordetella pertussis (BX470248) BP2745; ABC transporter ATP-binding protein 2174347..2175435 Bordetella bronchiseptica RB50 2660112 NP_888572.1 CDS BB2028 NC_002927.3 2175432 2176235 D ortholog of Bordetella pertussis (BX470248) BP2744; ABC transporter ATP-binding protein 2175432..2176235 Bordetella bronchiseptica RB50 2662215 NP_888573.1 CDS BB2029 NC_002927.3 2176232 2176963 D ortholog of Bordetella pertussis (BX470248) BP2743; ABC transporter ATP-binding protein 2176232..2176963 Bordetella bronchiseptica RB50 2660225 NP_888574.1 CDS BB2030 NC_002927.3 2177021 2178310 R ortholog of Bordetella pertussis (BX470248) BP2742; hypothetical protein complement(2177021..2178310) Bordetella bronchiseptica RB50 2662201 NP_888575.1 CDS BB2031 NC_002927.3 2178407 2179009 D ortholog of Bordetella pertussis (BX470248) BP2741; TetR family transcriptional regulator 2178407..2179009 Bordetella bronchiseptica RB50 2658952 NP_888576.1 CDS bapC NC_002927.3 2179242 2182223 D ortholog of Bordetella pertussis (BX470248) BP2738; bapc seems to undergo phase variation at a poly C; autotransporter 2179242..2182223 Bordetella bronchiseptica RB50 2660340 NP_888577.1 CDS amtB NC_002927.3 2182286 2183524 R ortholog of Bordetella pertussis (BX470248) BP2737; ammonium transporter complement(2182286..2183524) Bordetella bronchiseptica RB50 2658957 NP_888578.1 CDS BB2035 NC_002927.3 2183550 2183888 R ortholog of Bordetella pertussis (BX470248) BP2736; nitrogen regulatory protein P-II complement(2183550..2183888) Bordetella bronchiseptica RB50 2663926 NP_888579.1 CDS BB2036 NC_002927.3 2184558 2184863 D ortholog of Bordetella pertussis (BX470248) BP2735; hypothetical protein 2184558..2184863 Bordetella bronchiseptica RB50 2661234 NP_888580.1 CDS BB2037 NC_002927.3 2184970 2186472 D ortholog of Bordetella pertussis (BX470248) BP2734; chelatase 2184970..2186472 Bordetella bronchiseptica RB50 2662039 NP_888581.1 CDS rpmI NC_002927.3 2186808 2187005 D ortholog of Bordetella pertussis (BX470248) BP2576; 50S ribosomal protein L35 2186808..2187005 Bordetella bronchiseptica RB50 2662040 NP_888582.1 CDS rplT NC_002927.3 2187021 2187380 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2187021..2187380 Bordetella bronchiseptica RB50 2659445 NP_888583.2 CDS pheS NC_002927.3 2187455 2188477 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2187455..2188477 Bordetella bronchiseptica RB50 2661544 NP_888584.1 CDS pheT NC_002927.3 2188490 2190907 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2188490..2190907 Bordetella bronchiseptica RB50 2659832 NP_888585.1 CDS ihfA NC_002927.3 2190913 2191254 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2190913..2191254 Bordetella bronchiseptica RB50 2661463 NP_888586.1 CDS BB2043 NC_002927.3 2191313 2191723 D ortholog of Bordetella pertussis (BX470248) BP2571; MerR family transcriptional regulator 2191313..2191723 Bordetella bronchiseptica RB50 2661508 NP_888587.1 CDS BB2044 NC_002927.3 2192119 2193210 R ortholog of Bordetella pertussis (BX470248) BP2570; hypothetical protein complement(2192119..2193210) Bordetella bronchiseptica RB50 2660805 NP_888588.1 CDS BB2045 NC_002927.3 2193394 2193990 D ortholog of Bordetella pertussis (BX470248) BP2569; lipoprotein 2193394..2193990 Bordetella bronchiseptica RB50 2660806 NP_888589.1 CDS BB2046 NC_002927.3 2194529 2195242 R ortholog of Bordetella pertussis (BX470248) BP2583; hypothetical protein complement(2194529..2195242) Bordetella bronchiseptica RB50 2659267 NP_888590.1 CDS BB2047 NC_002927.3 2195365 2195838 R ortholog of Bordetella pertussis (BX470248) BP2584; acetyltransferase complement(2195365..2195838) Bordetella bronchiseptica RB50 2661769 NP_888591.1 CDS BB2048 NC_002927.3 2195841 2196218 R hypothetical protein complement(2195841..2196218) Bordetella bronchiseptica RB50 2659370 NP_888592.1 CDS BB2049 NC_002927.3 2196343 2197260 D beta-lactamase 2196343..2197260 Bordetella bronchiseptica RB50 2659371 NP_888593.1 CDS BB2050 NC_002927.3 2197275 2197628 R hypothetical protein complement(2197275..2197628) Bordetella bronchiseptica RB50 2662618 NP_888594.1 CDS BB2051 NC_002927.3 2197646 2198164 R regulatory protein complement(2197646..2198164) Bordetella bronchiseptica RB50 2660295 NP_888595.1 CDS BB2052 NC_002927.3 2198175 2198777 R hypothetical protein complement(2198175..2198777) Bordetella bronchiseptica RB50 2660610 NP_888596.1 CDS BB2053 NC_002927.3 2198881 2199162 D ortholog of Bordetella pertussis (BX470248) BP2581; hypothetical protein 2198881..2199162 Bordetella bronchiseptica RB50 2661082 NP_888597.1 CDS BB2054 NC_002927.3 2199277 2200890 R ortholog of Bordetella pertussis (BX470248) BP2580; GntR family transcriptional regulator complement(2199277..2200890) Bordetella bronchiseptica RB50 2661083 NP_888598.1 CDS BB2055 NC_002927.3 2201475 2201807 D ortholog of Bordetella pertussis (BX470248) BP2567; hypothetical protein 2201475..2201807 Bordetella bronchiseptica RB50 2661244 NP_888599.1 CDS BB2056 NC_002927.3 2201949 2202689 R ortholog of Bordetella pertussis (BX470248) BP2566; endonulease complement(2201949..2202689) Bordetella bronchiseptica RB50 2660277 NP_888600.1 CDS ecnA2 NC_002927.3 2202865 2202996 D ortholog of Bordetella pertussis (BX470248) BP2565; entericidin A anti-toxin precursor 2202865..2202996 Bordetella bronchiseptica RB50 2660278 NP_888601.1 CDS BB2058 NC_002927.3 2203122 2203556 D ortholog of Bordetella pertussis (BX470248) BP2564; lipoprotein 2203122..2203556 Bordetella bronchiseptica RB50 2659738 NP_888602.1 CDS BB2059 NC_002927.3 2203558 2203974 D ortholog of Bordetella pertussis (BX470248) BP2563; integral membrane protein 2203558..2203974 Bordetella bronchiseptica RB50 2659291 NP_888603.2 CDS pyrB NC_002927.3 2204081 2205376 D catalyzes the conversion of carbamoyl phosphate and aspartate to form N-carbamoyl aspartate; aspartate carbamoyltransferase 2204081..2205376 Bordetella bronchiseptica RB50 2659396 NP_888604.1 CDS rdgC NC_002927.3 2205416 2206315 R Required for efficient pilin antigenic variation; recombination associated protein complement(2205416..2206315) Bordetella bronchiseptica RB50 2662003 NP_888605.1 CDS BB2062 NC_002927.3 2206469 2206687 D ortholog of Bordetella pertussis (BX470248) BP2560; hypothetical protein 2206469..2206687 Bordetella bronchiseptica RB50 2662004 NP_888606.1 CDS BB2063 NC_002927.3 2206951 2208258 R ortholog of Bordetella pertussis (BX470248) BP2559; hypothetical protein complement(2206951..2208258) Bordetella bronchiseptica RB50 2659911 NP_888607.1 CDS BB2064 NC_002927.3 2208276 2209163 R ortholog of Bordetella pertussis (BX470248) BP2558; LysR family transcriptional regulator complement(2208276..2209163) Bordetella bronchiseptica RB50 2662235 NP_888608.1 CDS BB2065 NC_002927.3 2209379 2210542 D ortholog of Bordetella pertussis (BX470248) BP2557; hypothetical protein 2209379..2210542 Bordetella bronchiseptica RB50 2662621 NP_888609.1 CDS BB2066 NC_002927.3 2210550 2210942 D ortholog of Bordetella pertussis (BX470248) BP2556; hypothetical protein 2210550..2210942 Bordetella bronchiseptica RB50 2660418 NP_888610.1 CDS BB2067 NC_002927.3 2210943 2211386 D ortholog of Bordetella pertussis (BX470248) BP2555; hypothetical protein 2210943..2211386 Bordetella bronchiseptica RB50 2660419 NP_888611.1 CDS fabG NC_002927.3 2211387 2212133 D ortholog of Bordetella pertussis (BX470248) BP2554; 3-oxoacyl-ACP reductase 2211387..2212133 Bordetella bronchiseptica RB50 2660312 NP_888612.1 CDS BB2069 NC_002927.3 2212171 2213208 D ortholog of Bordetella pertussis (BX470248) BP2553; iron ABC transporter substrate-binding protein 2212171..2213208 Bordetella bronchiseptica RB50 2660405 NP_888613.1 CDS BB2070 NC_002927.3 2213249 2214988 D ortholog of Bordetella pertussis (BX470248) BP2552; ABC transporter substrate-binding protein 2213249..2214988 Bordetella bronchiseptica RB50 2662603 NP_888614.1 CDS BB2071 NC_002927.3 2214985 2216049 D ortholog of Bordetella pertussis (BX470248) BP2551; ABC transporter ATP-binding protein 2214985..2216049 Bordetella bronchiseptica RB50 2660319 NP_888615.1 CDS BB2072 NC_002927.3 2216077 2216853 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2216077..2216853 Bordetella bronchiseptica RB50 2660884 NP_888616.1 CDS BB2073 NC_002927.3 2217102 2218778 R ortholog of Bordetella pertussis (BX470248) BP2549; sugar transport protein complement(2217102..2218778) Bordetella bronchiseptica RB50 2660683 NP_888617.1 CDS BB2074 NC_002927.3 2218973 2220331 R ortholog of Bordetella pertussis (BX470248) BP2548; two-component system histidine kinase complement(2218973..2220331) Bordetella bronchiseptica RB50 2659483 NP_888618.1 CDS BB2075 NC_002927.3 2220447 2221136 R ortholog of Bordetella pertussis (BX470248) BP2547; two-component response regulatory protein complement(2220447..2221136) Bordetella bronchiseptica RB50 2659276 NP_888619.1 CDS recA NC_002927.3 2221376 2222437 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2221376..2222437 Bordetella bronchiseptica RB50 2661160 NP_888620.1 CDS recX NC_002927.3 2222470 2223036 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2222470..2223036 Bordetella bronchiseptica RB50 2661016 NP_888621.1 CDS metR NC_002927.3 2223111 2224040 R ortholog of Bordetella pertussis (BX470248) BP2544; transcriptional regulatory protein complement(2223111..2224040) Bordetella bronchiseptica RB50 2662015 NP_888622.1 CDS metE NC_002927.3 2224202 2226496 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2224202..2226496 Bordetella bronchiseptica RB50 2660297 NP_888623.1 CDS BB2080 NC_002927.3 2226701 2227303 D ortholog of Bordetella pertussis (BX470248) BP2542; hypothetical protein 2226701..2227303 Bordetella bronchiseptica RB50 2661597 NP_888624.1 CDS sucC NC_002927.3 2227314 2228474 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2227314..2228474 Bordetella bronchiseptica RB50 2661419 NP_888625.1 CDS sucD NC_002927.3 2228494 2229375 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 2228494..2229375 Bordetella bronchiseptica RB50 2661572 NP_888626.1 CDS BB2083 NC_002927.3 2229651 2230346 D ortholog of Bordetella pertussis (BX470248) BP2539; integral membrane protein 2229651..2230346 Bordetella bronchiseptica RB50 2659364 NP_888627.1 CDS BB2084 NC_002927.3 2230418 2231224 D ortholog of Bordetella pertussis (BX470248) BP2538; integral membrane protein 2230418..2231224 Bordetella bronchiseptica RB50 2659176 NP_888628.1 CDS hemC NC_002927.3 2231343 2232287 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 2231343..2232287 Bordetella bronchiseptica RB50 2662220 NP_888629.1 CDS BB2086 NC_002927.3 2232284 2233108 D ortholog of Bordetella pertussis (BX470248) BP2536; uroporphyrinogen-III synthase 2232284..2233108 Bordetella bronchiseptica RB50 2659047 NP_888630.1 CDS BB2087 NC_002927.3 2233146 2234330 D ortholog of Bordetella pertussis (BX470248) BP2535; hypothetical protein 2233146..2234330 Bordetella bronchiseptica RB50 2659109 NP_888631.1 CDS BB2088 NC_002927.3 2234334 2235929 D ortholog of Bordetella pertussis (BX470248) BP2534; hypothetical protein 2234334..2235929 Bordetella bronchiseptica RB50 2659052 NP_888632.1 CDS ppa NC_002927.3 2235958 2236494 D ortholog of Bordetella pertussis (BX470248) BP2533; inorganic pyrophosphatase 2235958..2236494 Bordetella bronchiseptica RB50 2659227 NP_888633.1 CDS BB2090 NC_002927.3 2236678 2237373 D ortholog of Bordetella pertussis (BX470248) BP2532; hypothetical protein 2236678..2237373 Bordetella bronchiseptica RB50 2659647 NP_888634.1 CDS ecnB NC_002927.3 2237400 2237531 D ortholog of Bordetella pertussis (BX470248) BP2531; entericidin B-like bacteriolytic toxin 2237400..2237531 Bordetella bronchiseptica RB50 2660611 NP_888635.1 CDS BB2092 NC_002927.3 2237889 2238152 D ortholog of Bordetella pertussis (BX470248) BP2530; integral membrane protein 2237889..2238152 Bordetella bronchiseptica RB50 2660599 NP_888636.1 CDS BB2093 NC_002927.3 2238149 2239465 D ortholog of Bordetella pertussis (BX470248) BP2529; hypothetical protein 2238149..2239465 Bordetella bronchiseptica RB50 2659414 NP_888637.1 CDS BB2094 NC_002927.3 2239462 2240085 D ortholog of Bordetella pertussis (BX470248) BP2528A; hypothetical protein 2239462..2240085 Bordetella bronchiseptica RB50 2659887 NP_888638.1 CDS BB2095 NC_002927.3 2240082 2240744 D ortholog of Bordetella pertussis (BX470248) BP2528; hypothetical protein 2240082..2240744 Bordetella bronchiseptica RB50 2659888 NP_888639.1 CDS BB2096 NC_002927.3 2240741 2241574 D ortholog of Bordetella pertussis (BX470248) BP2527; hypothetical protein 2240741..2241574 Bordetella bronchiseptica RB50 2659889 NP_888640.1 CDS BB2097 NC_002927.3 2241571 2242983 D ortholog of Bordetella pertussis (BX470248) BP2526; secretory apparatus 2241571..2242983 Bordetella bronchiseptica RB50 2662592 NP_888641.1 CDS BB2098 NC_002927.3 2242980 2244596 D ortholog of Bordetella pertussis (BX470248) BP2525A; secretory protein 2242980..2244596 Bordetella bronchiseptica RB50 2660336 NP_888642.1 CDS BB2099 NC_002927.3 2244593 2245438 D ortholog of Bordetella pertussis (BX470248) BP2525; hypothetical protein 2244593..2245438 Bordetella bronchiseptica RB50 2659646 NP_888643.1 CDS BB2100 NC_002927.3 2245449 2246345 D ortholog of Bordetella pertussis (BX470248) BP2524A+BP1081; hypothetical protein 2245449..2246345 Bordetella bronchiseptica RB50 2660735 NP_888644.1 CDS BB2101 NC_002927.3 2246567 2247367 R ortholog of Bordetella pertussis (BX470248) BP1083; hypothetical protein complement(2246567..2247367) Bordetella bronchiseptica RB50 2662099 NP_888645.1 CDS thrB NC_002927.3 2247411 2248397 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase complement(2247411..2248397) Bordetella bronchiseptica RB50 2660860 NP_888646.1 CDS BB2103 NC_002927.3 2248537 2249550 D ortholog of Bordetella pertussis (BX470248) BP1085; tRNA-dihydrouridine synthase A 2248537..2249550 Bordetella bronchiseptica RB50 2659193 NP_888647.1 CDS BB2104 NC_002927.3 2249561 2250019 R ortholog of Bordetella pertussis (BX470248) BP1087; hypothetical protein complement(2249561..2250019) Bordetella bronchiseptica RB50 2660875 NP_888648.1 CDS BB2105 NC_002927.3 2250056 2251369 R ortholog of Bordetella pertussis (BX470248) BP1088; hypothetical protein complement(2250056..2251369) Bordetella bronchiseptica RB50 2660906 NP_888649.1 CDS BB2106 NC_002927.3 2251387 2251758 D ortholog of Bordetella pertussis (BX470248) BP1089; hypothetical protein 2251387..2251758 Bordetella bronchiseptica RB50 2660017 NP_888650.1 CDS BB2107 NC_002927.3 2251755 2253242 D ortholog of Bordetella pertussis (BX470248) BP1090; hypothetical protein 2251755..2253242 Bordetella bronchiseptica RB50 2661239 NP_888651.1 CDS BB2108 NC_002927.3 2253335 2254111 D ortholog of Bordetella pertussis (BX470248) BP1091; two-component response regulator 2253335..2254111 Bordetella bronchiseptica RB50 2659069 NP_888652.1 CDS BB2109 NC_002927.3 2254093 2256975 R ortholog of Bordetella pertussis (BX470248) BP1092; two-component histidine kinase complement(2254093..2256975) Bordetella bronchiseptica RB50 2659958 NP_888653.1 CDS BB2110 NC_002927.3 2257195 2258571 D ortholog of Bordetella pertussis (BX470248) BP1460; hypothetical protein 2257195..2258571 Bordetella bronchiseptica RB50 2659956 NP_888654.1 CDS aroC NC_002927.3 2258613 2259674 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2258613..2259674 Bordetella bronchiseptica RB50 2661324 NP_888655.1 CDS BB2112 NC_002927.3 2259708 2260544 D ortholog of Bordetella pertussis (BX470248) BP1463; lipoprotein 2259708..2260544 Bordetella bronchiseptica RB50 2662624 NP_888656.1 CDS mobB NC_002927.3 2260554 2261096 R ortholog of Bordetella pertussis (BX470248) BP1464; molybdopterin-guanine dinucleotide biosynthesis protein B complement(2260554..2261096) Bordetella bronchiseptica RB50 2661532 NP_888657.1 CDS moeA NC_002927.3 2261110 2262402 R ortholog of Bordetella pertussis (BX470248) BP1465; molybdopterin biosynthesis protein complement(2261110..2262402) Bordetella bronchiseptica RB50 2661557 NP_888658.1 CDS mobA NC_002927.3 2262399 2263007 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(2262399..2263007) Bordetella bronchiseptica RB50 2660646 NP_888659.1 CDS BB2116 NC_002927.3 2263144 2264241 D ortholog of Bordetella pertussis (BX470248) BP1467; iron sulfur binding protein 2263144..2264241 Bordetella bronchiseptica RB50 2660833 NP_888660.1 CDS BB2117 NC_002927.3 2264248 2264808 D ortholog of Bordetella pertussis (BX470248) BP1468; hypothetical protein 2264248..2264808 Bordetella bronchiseptica RB50 2660931 NP_888661.1 CDS BB2118 NC_002927.3 2264805 2265485 D ortholog of Bordetella pertussis (BX470248) BP1469; hypothetical protein 2264805..2265485 Bordetella bronchiseptica RB50 2660889 NP_888662.1 CDS BB2119 NC_002927.3 2265482 2267599 D ortholog of Bordetella pertussis (BX470248) BP1470; iron-sulfur binding protein 2265482..2267599 Bordetella bronchiseptica RB50 2660890 NP_888663.1 CDS BB2120 NC_002927.3 2267596 2268225 D ortholog of Bordetella pertussis (BX470248) BP1471; hypothetical protein 2267596..2268225 Bordetella bronchiseptica RB50 2662169 NP_888664.1 CDS fdhA NC_002927.3 2268601 2271570 D ortholog of Bordetella pertussis (BX470248) BP1472; formate dehydrogenase large subunit 2268601..2271570 Bordetella bronchiseptica RB50 2662056 NP_888665.1 CDS fdhB NC_002927.3 2271581 2272210 D ortholog of Bordetella pertussis (BX470248) BP1473; formate dehydrogenase iron-sulfur subunit 2271581..2272210 Bordetella bronchiseptica RB50 2661154 NP_888666.1 CDS BB2123 NC_002927.3 2272207 2272440 D ortholog of Bordetella pertussis (BX470248) BP1474; lipoprotein 2272207..2272440 Bordetella bronchiseptica RB50 2662062 NP_888667.1 CDS fdhC NC_002927.3 2272453 2273610 D ortholog of Bordetella pertussis (BX470248) BP1475; formate dehydrogenase subunit C precursor 2272453..2273610 Bordetella bronchiseptica RB50 2659408 NP_888668.1 CDS BB2125 NC_002927.3 2273633 2274007 D ortholog of Bordetella pertussis (BX470248) BP1476; hypothetical protein 2273633..2274007 Bordetella bronchiseptica RB50 2658960 NP_888669.1 CDS BB2126 NC_002927.3 2274041 2275156 R ortholog of Bordetella pertussis (BX470248) BP1477; hypothetical protein complement(2274041..2275156) Bordetella bronchiseptica RB50 2659657 NP_888670.1 CDS BB2127 NC_002927.3 2275318 2276055 D ortholog of Bordetella pertussis (BX470248) BP1478; ABC transporter permease 2275318..2276055 Bordetella bronchiseptica RB50 2660339 NP_888671.1 CDS BB2128 NC_002927.3 2276052 2276756 D ortholog of Bordetella pertussis (BX470248) BP1479; ABC transporter ATP-binding protein 2276052..2276756 Bordetella bronchiseptica RB50 2659840 NP_888672.1 CDS BB2129 NC_002927.3 2276753 2277571 D ortholog of Bordetella pertussis (BX470248) BP1480; hypothetical protein 2276753..2277571 Bordetella bronchiseptica RB50 2661377 NP_888673.1 CDS leuC NC_002927.3 2277825 2279258 D dehydratase, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2277825..2279258 Bordetella bronchiseptica RB50 2661406 NP_888674.2 CDS leuD NC_002927.3 2279273 2279923 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2279273..2279923 Bordetella bronchiseptica RB50 2660903 NP_888675.1 CDS leuB NC_002927.3 2280005 2281081 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2280005..2281081 Bordetella bronchiseptica RB50 2660922 NP_888676.1 CDS asd NC_002927.3 2281268 2282398 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 2281268..2282398 Bordetella bronchiseptica RB50 2661008 NP_888677.1 CDS BB2134 NC_002927.3 2282449 2284233 D ortholog of Bordetella pertussis (BX470248) BP1485; hypothetical protein 2282449..2284233 Bordetella bronchiseptica RB50 2661006 NP_888678.1 CDS truA NC_002927.3 2284237 2285049 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2284237..2285049 Bordetella bronchiseptica RB50 2660995 NP_888679.1 CDS smoM NC_002927.3 2285194 2286288 D ortholog of Bordetella pertussis (BX470248) BP1487; ABC transporter substrate-binding protein 2285194..2286288 Bordetella bronchiseptica RB50 2660982 NP_888680.1 CDS BB2137 NC_002927.3 2286500 2287129 D ortholog of Bordetella pertussis (BX470248) BP1488; hypothetical protein 2286500..2287129 Bordetella bronchiseptica RB50 2659701 NP_888681.1 CDS BB2138 NC_002927.3 2287132 2288799 D ortholog of Bordetella pertussis (BX470248) BP1489; hypothetical protein 2287132..2288799 Bordetella bronchiseptica RB50 2661268 NP_888682.1 CDS trpF NC_002927.3 2288814 2289470 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 2288814..2289470 Bordetella bronchiseptica RB50 2659216 NP_888683.1 CDS BB2140 NC_002927.3 2289771 2290049 R hypothetical protein complement(2289771..2290049) Bordetella bronchiseptica RB50 2663939 NP_888684.1 CDS BB2141 NC_002927.3 2290036 2290302 R hypothetical protein complement(2290036..2290302) Bordetella bronchiseptica RB50 2662125 NP_888685.1 CDS BB2142 NC_002927.3 2290533 2292074 R hypothetical protein complement(2290533..2292074) Bordetella bronchiseptica RB50 2662126 NP_888686.1 CDS BB2143 NC_002927.3 2292136 2293014 R hypothetical protein complement(2292136..2293014) Bordetella bronchiseptica RB50 2659300 NP_888687.1 CDS BB2144 NC_002927.3 2293411 2294043 D hypothetical protein 2293411..2294043 Bordetella bronchiseptica RB50 2661245 NP_888688.1 CDS aqpZ NC_002927.3 2294154 2294864 D porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 2294154..2294864 Bordetella bronchiseptica RB50 2659678 NP_888689.1 CDS BB2146 NC_002927.3 2294903 2295175 R hypothetical protein complement(2294903..2295175) Bordetella bronchiseptica RB50 2660137 NP_888690.1 CDS hemN NC_002927.3 2295335 2296759 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2295335..2296759 Bordetella bronchiseptica RB50 2660138 NP_888691.1 CDS BB2148 NC_002927.3 2296756 2297148 R ortholog of Bordetella pertussis (BX470248) BP1495; hypothetical protein complement(2296756..2297148) Bordetella bronchiseptica RB50 2659367 NP_888692.1 CDS BB2149 NC_002927.3 2297154 2297930 R ortholog of Bordetella pertussis (BX470248) BP1496; two-component response regulator complement(2297154..2297930) Bordetella bronchiseptica RB50 2659279 NP_888693.1 CDS thrS NC_002927.3 2298318 2300267 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2298318..2300267 Bordetella bronchiseptica RB50 2661457 NP_888694.1 CDS infC NC_002927.3 2300339 2300833 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2300339..2300833 Bordetella bronchiseptica RB50 2660603 NP_888695.1 CDS gshB NC_002927.3 2300970 2301926 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 2300970..2301926 Bordetella bronchiseptica RB50 2660613 NP_888696.1 CDS BB2153 NC_002927.3 2301937 2302335 D ortholog of Bordetella pertussis (BX470248) BP1500; PTS system subunit IIA 2301937..2302335 Bordetella bronchiseptica RB50 2660757 NP_888697.1 CDS ptsH NC_002927.3 2302451 2302720 D ortholog of Bordetella pertussis (BX470248) BP1501; phosphocarrier protein HPr 2302451..2302720 Bordetella bronchiseptica RB50 2660651 NP_888698.1 CDS ptsI NC_002927.3 2302842 2304536 D ortholog of Bordetella pertussis (BX470248) BP1502; phosphoenolpyruvate-protein phosphotransferase 2302842..2304536 Bordetella bronchiseptica RB50 2660803 NP_888699.1 CDS BB2156 NC_002927.3 2304701 2304925 R ortholog of Bordetella pertussis (BX470248) BP1503; hypothetical protein complement(2304701..2304925) Bordetella bronchiseptica RB50 2660938 NP_888700.1 CDS osmC NC_002927.3 2304922 2305347 R ortholog of Bordetella pertussis (BX470248) BP1504; osmotically inducible protein C complement(2304922..2305347) Bordetella bronchiseptica RB50 2660939 NP_888701.1 CDS BB2158 NC_002927.3 2305522 2306472 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 2305522..2306472 Bordetella bronchiseptica RB50 2661262 NP_888702.1 CDS BB2159 NC_002927.3 2306514 2307674 D ortholog of Bordetella pertussis (BX470248) BP1506; hypothetical protein 2306514..2307674 Bordetella bronchiseptica RB50 2659171 NP_888703.1 CDS BB2160 NC_002927.3 2307835 2308755 D ortholog of Bordetella pertussis (BX470248) BP1507; ectoine/hydroxyectoine ABC transporter substrate-binding protein 2307835..2308755 Bordetella bronchiseptica RB50 2659652 NP_888704.1 CDS BB2161 NC_002927.3 2308768 2309409 D ortholog of Bordetella pertussis (BX470248) BP1508; inner membrane component of binding-protein-dependent transport system 2308768..2309409 Bordetella bronchiseptica RB50 2659739 NP_888705.1 CDS BB2162 NC_002927.3 2309406 2310077 D ortholog of Bordetella pertussis (BX470248) BP1509; inner membrane component of binding-protein-dependent transport system 2309406..2310077 Bordetella bronchiseptica RB50 2659271 NP_888706.1 CDS BB2163 NC_002927.3 2310074 2310844 D ortholog of Bordetella pertussis (BX470248) BP1510; phosphate ABC transporter ATP-binding protein 2310074..2310844 Bordetella bronchiseptica RB50 2659265 NP_888707.1 CDS dut NC_002927.3 2310841 2311290 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(2310841..2311290) Bordetella bronchiseptica RB50 2659294 NP_888708.1 CDS BB2165 NC_002927.3 2311384 2311932 R ortholog of Bordetella pertussis (BX470248) BP2584A; hypothetical protein complement(2311384..2311932) Bordetella bronchiseptica RB50 2661222 NP_888709.1 CDS BB2166 NC_002927.3 2311929 2312567 R ortholog of Bordetella pertussis (BX470248) BP2585; DedA family integral membrane protein complement(2311929..2312567) Bordetella bronchiseptica RB50 2659676 NP_888710.1 CDS BB2167 NC_002927.3 2312640 2313710 D ortholog of Bordetella pertussis (BX470248) BP2586; integral membrane protein 2312640..2313710 Bordetella bronchiseptica RB50 2661940 NP_888711.1 CDS BB2168 NC_002927.3 2313707 2314180 R ortholog of Bordetella pertussis (BX470248) BP1749; AsnC family transcriptional regulator complement(2313707..2314180) Bordetella bronchiseptica RB50 2660232 NP_888712.1 CDS BB2169 NC_002927.3 2314342 2315280 D ortholog of Bordetella pertussis (BX470248) BP1750; hypothetical protein 2314342..2315280 Bordetella bronchiseptica RB50 2659203 NP_888713.1 CDS dfp NC_002927.3 2315282 2316490 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(2315282..2316490) Bordetella bronchiseptica RB50 2662625 NP_888714.1 CDS lspA NC_002927.3 2316595 2317101 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(2316595..2317101) Bordetella bronchiseptica RB50 2659810 NP_888715.1 CDS ileS NC_002927.3 2317104 2319965 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(2317104..2319965) Bordetella bronchiseptica RB50 2659830 NP_888716.1 CDS ribF NC_002927.3 2319955 2320920 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(2319955..2320920) Bordetella bronchiseptica RB50 2659929 NP_888717.1 CDS purN NC_002927.3 2320980 2321633 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2320980..2321633 Bordetella bronchiseptica RB50 2659971 NP_888718.1 CDS BB2175 NC_002927.3 2321821 2323122 D ortholog of Bordetella pertussis (BX470248) BP1756; hypothetical protein 2321821..2323122 Bordetella bronchiseptica RB50 2659972 NP_888719.1 CDS BB2176 NC_002927.3 2323119 2323493 R ortholog of Bordetella pertussis (BX470248) BP1757; hypothetical protein complement(2323119..2323493) Bordetella bronchiseptica RB50 2661367 NP_888720.1 CDS BB2177 NC_002927.3 2323755 2324963 D ortholog of Bordetella pertussis (BX470248) BP1758; fatty acid desaturase 2323755..2324963 Bordetella bronchiseptica RB50 2661385 NP_888721.1 CDS uvrD NC_002927.3 2324960 2327260 D ortholog of Bordetella pertussis (BX470248) BP1759; DNA helicase II 2324960..2327260 Bordetella bronchiseptica RB50 2661428 NP_888722.1 CDS BB2179 NC_002927.3 2327313 2329925 R ortholog of Bordetella pertussis (BX470248) BP1760; hypothetical protein complement(2327313..2329925) Bordetella bronchiseptica RB50 2659443 NP_888723.1 CDS BB2180 NC_002927.3 2330285 2332210 R ortholog of Bordetella pertussis (BX470248) BP1761; ABC transporter ATP-binding protein complement(2330285..2332210) Bordetella bronchiseptica RB50 2659444 NP_888724.1 CDS BB2181 NC_002927.3 2332207 2333103 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(2332207..2333103) Bordetella bronchiseptica RB50 2660811 NP_888725.1 CDS dapE NC_002927.3 2333110 2334249 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(2333110..2334249) Bordetella bronchiseptica RB50 2660812 NP_888726.1 CDS dapD NC_002927.3 2334249 2335070 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(2334249..2335070) Bordetella bronchiseptica RB50 2660853 NP_888727.1 CDS dapC NC_002927.3 2335096 2336310 R catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase complement(2335096..2336310) Bordetella bronchiseptica RB50 2659618 NP_888728.1 CDS BB2185 NC_002927.3 2336592 2337581 D Similar to Ralstonia solanacearum probable integrase/recombinase rsc1655 or rs03938 SWALL:Q8XYV1 (EMBL:AL646065) (334 aa) fasta scores: E(): 6.7e-47, 43.88% id in 335 aa, and to Pasteurella multocida integrase/recombinase rcI SWALL:Q9L6A5 (EMBL:AF237934) (329 aa) fasta scores: E(): 1.3e-36, 37.34% id in 332 aa; integrase 2336592..2337581 Bordetella bronchiseptica RB50 2662211 NP_888729.1 CDS BB2186 NC_002927.3 2337578 2337778 R Similar to Vibrio cholerae transcriptional regulator vc0497 SWALL:Q9KUL8 (EMBL:AE004136) (66 aa) fasta scores: E(): 0.032, 28.57% id in 63 aa; hypothetical protein complement(2337578..2337778) Bordetella bronchiseptica RB50 2662212 NP_888730.1 CDS BB2187 NC_002927.3 2337779 2337898 R no significant database matches; hypothetical protein complement(2337779..2337898) Bordetella bronchiseptica RB50 2659236 NP_888731.1 CDS BB2188 NC_002927.3 2337891 2338556 R Similar to Bacteriophage Mx8 hypothetical 25.3 kDa protein SWALL:O03965 (EMBL:U64984) (222 aa) fasta scores: E(): 0.00013, 42.54% id in 228 aa, and to Xylella fastidiosa phage-related protein xf0485 SWALL:Q9PG17 (EMBL:AE003898) (181 aa) fasta scores: E(): 0.0047, 37.73% id in 212 aa; hypothetical protein complement(2337891..2338556) Bordetella bronchiseptica RB50 2659237 NP_888732.1 CDS BB2189 NC_002927.3 2338549 2339718 R no significant database matches; hypothetical protein complement(2338549..2339718) Bordetella bronchiseptica RB50 2659238 NP_888733.1 CDS BB2190 NC_002927.3 2339818 2340237 R no significant database matches; hypothetical protein complement(2339818..2340237) Bordetella bronchiseptica RB50 2658973 NP_888734.1 CDS BB2191 NC_002927.3 2340326 2340973 R Similar to Bacteriophage VT2-Sa ExOnuclease exO SWALL:Q9T1N7 (EMBL:AP000363) (226 aa) fasta scores: E(): 1.4e-11, 31.06% id in 206 aa, and to Escherichia coli O157:H7 exonuclease exo or ecs1174 SWALL:Q9KXG3 (EMBL:AP000422) (226 aa) fasta scores: E(): 1.2e-11, 31.06% id in 206 aa; phage-related exonuclease complement(2340326..2340973) Bordetella bronchiseptica RB50 2658974 NP_888735.1 CDS BB2192 NC_002927.3 2340970 2341956 R Similar to Escherichia coli rect protein RecT or b1349 SWALL:RECT_ECOLI (SWALL:P33228) (269 aa) fasta scores: E(): 8e-10, 30.51% id in 213 aa, and to Proteus vulgaris DNA recombination protein orf223 SWALL:BAB93785 (EMBL:AP004237) (510 aa) fasta scores: E(): 7.8e-13, 31.74% id in 315 aa; phage-related DNA recombination protein complement(2340970..2341956) Bordetella bronchiseptica RB50 2658975 NP_888736.1 CDS BB2193 NC_002927.3 2341960 2342142 R no significant database matches; phage-related membrane protein complement(2341960..2342142) Bordetella bronchiseptica RB50 2662179 NP_888737.1 CDS BB2194 NC_002927.3 2342139 2342516 R no significant database matches; hypothetical protein complement(2342139..2342516) Bordetella bronchiseptica RB50 2660002 NP_888738.1 CDS BB2195 NC_002927.3 2342519 2342728 R no significant database matches; hypothetical protein complement(2342519..2342728) Bordetella bronchiseptica RB50 2660003 NP_888739.1 CDS BB2196 NC_002927.3 2342748 2343215 R no significant database matches; hypothetical protein complement(2342748..2343215) Bordetella bronchiseptica RB50 2660329 NP_888740.1 CDS BB2197 NC_002927.3 2343251 2343493 R no significant database matches; hypothetical protein complement(2343251..2343493) Bordetella bronchiseptica RB50 2660330 NP_888741.1 CDS BB2198 NC_002927.3 2343690 2344712 R Similar to Bacteriophage 933W, and Stx2 converting bacteriophage I hypothetical 39.1 kDa protein l0095 SWALL:Q9T208 (EMBL:AF125520) (349 aa) fasta scores: E(): 1.5e-57, 51.17% id in 342 aa, and to Escherichia coli O157:H7 hypothetical protein Z1456 SWALL:Q8X497 (EMBL:AE005296) (347 aa) fasta scores: E(): 1.5e-57, 51.17% id in 342 aa; hypothetical protein complement(2343690..2344712) Bordetella bronchiseptica RB50 2660331 NP_888742.1 CDS BB2199 NC_002927.3 2344851 2345480 R Similar to Bacteriophage D3 repressor protein CI SWALL:RPC1_BPD3 (SWALL:Q37906) (223 aa) fasta scores: E(): 1.1e-05, 28.67% id in 143 aa, and to Neisseria meningitidis regulator nma1884 SWALL:Q9JTC1 (EMBL:AL162757) (234 aa) fasta scores: E(): 3.9e-06, 28.72% id in 188 aa; phage repressor protein complement(2344851..2345480) Bordetella bronchiseptica RB50 2659308 NP_888743.1 CDS BB2200 NC_002927.3 2345960 2346280 R no significant database matches; hypothetical protein complement(2345960..2346280) Bordetella bronchiseptica RB50 2659309 NP_888744.1 CDS BB2201 NC_002927.3 2346273 2346971 R no significant database matches; phage-related membrane protein complement(2346273..2346971) Bordetella bronchiseptica RB50 2659310 NP_888745.1 CDS BB2201A NC_002927.3 2346986 2347240 R no significant database matches; hypothetical protein complement(2346986..2347240) Bordetella bronchiseptica RB50 2659132 NP_888746.1 CDS BB2202 NC_002927.3 2347326 2347490 R no significant database matches; hypothetical protein complement(2347326..2347490) Bordetella bronchiseptica RB50 2659230 NP_888747.1 CDS BB2203 NC_002927.3 2347578 2347886 D Similar to Ralstonia solanacearum hypothetical protein rsc1905 or rs03473 SWALL:Q8XY58 (EMBL:AL646067) (57 aa) fasta scores: E(): 0.00041, 39.62% id in 53 aa; hypothetical protein 2347578..2347886 Bordetella bronchiseptica RB50 2659231 NP_888748.1 CDS ninB NC_002927.3 2347889 2348296 D Similar to Bacteriophage lambda protein NinB SWALL:NINB_LAMBD (SWALL:P03765) (146 aa) fasta scores: E(): 1.5e-09, 34.92% id in 126 aa, and to Yersinia pestis phage protein NinB or ypo2089 SWALL:Q8ZER6 (EMBL:AJ414151) (142 aa) fasta scores: E(): 2.1e-12, 47.17% id in 106 aa; hypothetical protein 2347889..2348296 Bordetella bronchiseptica RB50 2661998 NP_888749.1 CDS BB2205 NC_002927.3 2348296 2348745 D Similar to Bacteriophage T7 hypothetical gene 7.7 protein 7.7 SWALL:Y77_BPT7 (SWALL:P03796) (130 aa) fasta scores: E(): 1.6e-11, 34.32% id in 134 aa, and to Ralstonia solanacearum bacteriophage-related protein rsc3236 or rs02453 SWALL:Q8XUF2 (EMBL:AL646074) (183 aa) fasta scores: E(): 1e-15, 41.06% id in 151 aa; hypothetical protein 2348296..2348745 Bordetella bronchiseptica RB50 2661288 NP_888750.1 CDS BB2206 NC_002927.3 2348742 2349158 D Similar to Bacteriophage phiE125 gp63 63 SWALL:Q8W6N7 (EMBL:AF447491) (112 aa) fasta scores: E(): 6.7e-12, 45.09% id in 102 aa, and to Escherichia coli, and Bacteriophage 82 hypothetical protein ybco in lambdoid dlp12 prophage region ybco or b0549 SWALL:YBCO_ECOLI (SWALL:Q47271) (96 aa) fasta scores: E(): 0.73, 37.66% id in 77 aa; hypothetical protein 2348742..2349158 Bordetella bronchiseptica RB50 2661289 NP_888751.1 CDS BB2207 NC_002927.3 2349158 2349982 D Similar to Salmonella typhi hypothetical protein Sty2063 SWALL:Q8Z5Z8 (EMBL:AL627272) (262 aa) fasta scores: E(): 1.5e-07, 24.43% id in 266 aa, and to Escherichia coli O157:H7 hypothetical protein z2397 z2397 or ecs1944 SWALL:Q8X8R8 (EMBL:AE005370) (262 aa) fasta scores: E(): 1.7e-06, 25.46% id in 267 aa; hypothetical protein 2349158..2349982 Bordetella bronchiseptica RB50 2661306 NP_888752.1 CDS BB2208 NC_002927.3 2349979 2350350 D no significant database matches; hypothetical protein 2349979..2350350 Bordetella bronchiseptica RB50 2661307 NP_888753.1 CDS BB2209 NC_002927.3 2350347 2351288 D no significant database matches; hypothetical protein 2350347..2351288 Bordetella bronchiseptica RB50 2661308 NP_888754.1 CDS BB2210 NC_002927.3 2351285 2351968 D Similar to bacteriophage WO hypothetical 16.7 kDa protein gp11 SWALL:Q9JMN0 (EMBL:AB036666) (151 aa) fasta scores: E(): 1.7e-13, 36.61% id in 142 aa, and to Ralstonia solanacearum bacteriophage-related protein rsc3228 or rs02445 SWALL:Q8XUG0 (EMBL:AL646074) (154 aa) fasta scores: E(): 1.1e-21, 46.35% id in 151 aa; hypothetical protein 2351285..2351968 Bordetella bronchiseptica RB50 2658976 NP_888755.1 CDS BB2211 NC_002927.3 2351965 2352168 D no significant database matches; hypothetical protein 2351965..2352168 Bordetella bronchiseptica RB50 2659005 NP_888756.1 CDS BB2212 NC_002927.3 2352165 2352605 D no significant database matches; hypothetical protein 2352165..2352605 Bordetella bronchiseptica RB50 2659006 NP_888757.1 CDS BB2213 NC_002927.3 2352924 2353295 D Similar to Lactobacillus delbrueckii DNA binding protein SWALL:Q8VN11 (EMBL:AJ421486) (112 aa) fasta scores: E(): 0.0039, 31.81% id in 88 aa; phage-related DNA binding protein 2352924..2353295 Bordetella bronchiseptica RB50 2659007 NP_888758.1 CDS BB2214 NC_002927.3 2353282 2354559 D Similar to Bacillus subtilis PbsX phage terminase large subunit XtmB SWALL:XTMB_BACSU (SWALL:P39786) (433 aa) fasta scores: E(): 0.2, 21.58% id in 417 aa, and to Yersinia pestis hypothetical 47.8 kDa protein y1030 or ypmt1.24C SWALL:O68741 (EMBL:AF074611) (418 aa) fasta scores: E(): 2.8e-17, 27.75% id in 436 aa; phage terminase 2353282..2354559 Bordetella bronchiseptica RB50 2662058 NP_888759.1 CDS BB2215 NC_002927.3 2354562 2355980 D Similar to Bacteriophage MB78 60 kDa protein gp62 SWALL:Q9T0Q3 (EMBL:Y19202) (540 aa) fasta scores: E(): 2.1e-31, 31.2% id in 455 aa; hypothetical protein 2354562..2355980 Bordetella bronchiseptica RB50 2659009 NP_888760.1 CDS BB2216 NC_002927.3 2356009 2357061 D Similar to bacteriophage phi ETA orf42 SWALL:Q9G003 (EMBL:AP001553) (320 aa) fasta scores: E(): 0.89, 23.1% id in 264 aa, and to Yersinia pestis hypothetical phage protein Ypo2108 ypo2108 SWALL:Q8ZEQ2 (EMBL:AJ414151) (370 aa) fasta scores: E(): 4.2e-52, 43.17% id in 359 aa; hypothetical protein 2356009..2357061 Bordetella bronchiseptica RB50 2659638 NP_888761.1 CDS BB2217 NC_002927.3 2357061 2357309 D no significant database matches; hypothetical protein 2357061..2357309 Bordetella bronchiseptica RB50 2659639 NP_888762.1 CDS BB2218 NC_002927.3 2357433 2358035 D no significant database matches; hypothetical protein 2357433..2358035 Bordetella bronchiseptica RB50 2659640 NP_888763.1 CDS BB2219 NC_002927.3 2358062 2359030 D Similar to Yersinia pestis phage protein ypo2110 SWALL:Q8ZEQ0 (EMBL:AJ414151) (401 aa) fasta scores: E(): 1.1e-09, 27.98% id in 318 aa; no significant database matches; hypothetical protein 2358062..2359030 Bordetella bronchiseptica RB50 2659713 NP_888764.1 CDS BB2220 NC_002927.3 2359040 2359297 D no significant database matches; hypothetical protein 2359040..2359297 Bordetella bronchiseptica RB50 2659714 NP_888765.1 CDS BB2221 NC_002927.3 2359360 2359842 D Similar to Yersinia pestis hypothetical phage protein Ypo2111 SWALL:Q8ZEP9 (EMBL:AJ414151) (176 aa) fasta scores: E(): 4.1, 26.94% id in 167 aa; hypothetical protein 2359360..2359842 Bordetella bronchiseptica RB50 2659715 NP_888766.1 CDS BB2222 NC_002927.3 2359844 2360044 D no significant database matches; hypothetical protein 2359844..2360044 Bordetella bronchiseptica RB50 2662070 NP_888767.1 CDS BB2223 NC_002927.3 2360044 2360439 D Similar to Rhizobium loti hypothetical protein Mlr8012 SWALL:Q984G8 (EMBL:AP003013) (130 aa) fasta scores: E(): 6.8, 26.82% id in 123 aa; hypothetical protein 2360044..2360439 Bordetella bronchiseptica RB50 2662071 NP_888768.1 CDS BB2224 NC_002927.3 2360436 2360834 D Weakly similar to Yersinia pestis hypothetical phage protein Ypo2114 SWALL:Q8ZEP6 (EMBL:AJ414151) (194 aa) fasta scores: E(): 1.8e-08, 36.93% id in 111 aa; hypothetical protein 2360436..2360834 Bordetella bronchiseptica RB50 2662072 NP_888769.1 CDS BB2225 NC_002927.3 2360831 2361253 D Similar to Yersinia pestis hypothetical phage protein Ypo2115 SWALL:Q8ZEP5 (EMBL:AJ414151) (135 aa) fasta scores: E(): 5.8e-10, 34.58% id in 133 aa, and to Rhizobium loti hypothetical protein Mlr8015 SWALL:Q984G5 (EMBL:AP003013) (137 aa) fasta scores: E(): 8.8e-06, 33.91% id in 115 aa; hypothetical protein 2360831..2361253 Bordetella bronchiseptica RB50 2662182 NP_888770.1 CDS BB2226 NC_002927.3 2361261 2361761 D Similar to Bacteriophage phiYeO3-12 1.45 protein 1.45 SWALL:Q9T140 (EMBL:AJ251805) (157 aa) fasta scores: E(): 2.6e-06, 36.06% id in 122 aa, and to Escherichia coli O157:H7 hypothetical protein z3935 z3935 or ecs3504 SWALL:Q8X989 (EMBL:AE005493) (201 aa) fasta scores: E(): 2.1e-14, 37.5% id in 144 aa; hypothetical protein 2361261..2361761 Bordetella bronchiseptica RB50 2662183 NP_888771.1 CDS BB2227 NC_002927.3 2362016 2362531 D Similar to Ralstonia solanacearum hypothetical protein rsc1689 or rs04083 SWALL:Q8XYR9 (EMBL:AL646065) (217 aa) fasta scores: E(): 4.3e-22, 41.07% id in 168 aa; hypothetical protein 2362016..2362531 Bordetella bronchiseptica RB50 2662184 NP_888772.1 CDS BB2228 NC_002927.3 2362544 2362873 D Similar to Yersinia pestis hypothetical phage protein Ypo2117 SWALL:Q8ZEP3 (EMBL:AJ414151) (103 aa) fasta scores: E(): 2.7e-07, 36.79% id in 106 aa; hypothetical protein 2362544..2362873 Bordetella bronchiseptica RB50 2659329 NP_888773.1 CDS BB2229 NC_002927.3 2362891 2363181 D Similar to Yersinia pestis hypothetical phage protein Ypo2118 SWALL:Q8ZEP2 (EMBL:AJ414151) (73 aa) fasta scores: E(): 1.3e-08, 52.05% id in 73 aa; hypothetical protein 2362891..2363181 Bordetella bronchiseptica RB50 2659244 NP_888774.1 CDS BB2230 NC_002927.3 2363209 2365809 D Similar to Ralstonia solanacearum probable phage hk97 tail length tape measure-related protein rsc1690 or rs04085 SWALL:Q8XYR8 (EMBL:AL646065) (957 aa) fasta scores: E(): 1.4e-47, 35.26% id in 913 aa, and to Bacteriophage N15 gp16 gene 16 SWALL:O64330 (EMBL:AF064539) (838 aa) fasta scores: E(): 1.2e-28, 28.1% id in 861 aa; phage tail protein 2363209..2365809 Bordetella bronchiseptica RB50 2659245 NP_888775.1 CDS BB2231 NC_002927.3 2365819 2366178 D Similar to Bacteriophage D3 Orf21 SWALL:Q9MCA0 (EMBL:AF165214) (159 aa) fasta scores: E(): 0.00045, 31.37% id in 102 aa; hypothetical protein 2365819..2366178 Bordetella bronchiseptica RB50 2663941 NP_888776.1 CDS BB2232 NC_002927.3 2366185 2366778 D Similar to Bacteriophage D3 Orf22 SWALL:Q9MC99 (EMBL:AF165214) (163 aa) fasta scores: E(): 0.1, 25.43% id in 173 aa; hypothetical protein 2366185..2366778 Bordetella bronchiseptica RB50 2663942 NP_888777.1 CDS BB2233 NC_002927.3 2366775 2367164 D Similar to Bacteriophage D3 Orf25 SWALL:Q9MC96 (EMBL:AF165214) (135 aa) fasta scores: E(): 0.00047, 30.46% id in 128 aa; hypothetical protein 2366775..2367164 Bordetella bronchiseptica RB50 2659214 NP_888778.1 CDS BB2234 NC_002927.3 2367157 2371113 D Weakly similar to Bacteriophage D3 Orf26 orf26 SWALL:Q9MC95 (EMBL:AF165214) (909 aa) fasta scores: E(): 4.8e-23, 25.98% id in 689 aa; hypothetical protein 2367157..2371113 Bordetella bronchiseptica RB50 2659215 NP_888779.1 CDS BB2235 NC_002927.3 2371118 2371534 D no significant database matches; hypothetical protein 2371118..2371534 Bordetella bronchiseptica RB50 2660015 NP_888780.1 CDS BB2237 NC_002927.3 2371753 2372016 D no significant database matches; hypothetical protein 2371753..2372016 Bordetella bronchiseptica RB50 2660016 NP_888781.1 CDS BB2238 NC_002927.3 2372016 2372828 D no significant database matches; hypothetical protein 2372016..2372828 Bordetella bronchiseptica RB50 2663947 NP_888782.1 CDS BB2239 NC_002927.3 2372833 2373075 D Similar to Serratia marcescens phage-holin analog protein regA SWALL:Q54422 (EMBL:U31763) (88 aa) fasta scores: E(): 0.97, 30.13% id in 73 aa, and to Haemophilus somnus holin SWALL:Q48281 (EMBL:U28154) (74 aa) fasta scores: E(): 2.7, 28.57% id in 63 aa; hypothetical protein 2372833..2373075 Bordetella bronchiseptica RB50 2663948 NP_888783.1 CDS BB2240 NC_002927.3 2373054 2373605 D Similar to Escherichia coli probable lysozyme from lambdoid prophage qin ydfq or b1554 SWALL:LYCW_ECOLI (SWALL:P76159) (177 aa) fasta scores: E(): 0.044, 27.56% id in 185 aa, and to Bacteriophage phi-Ea1h lysozyme lyZ SWALL:Q9FZS7 (EMBL:AJ278614) (178 aa) fasta scores: E(): 0.081, 26.7% id in 191 aa; phage lysozyme 2373054..2373605 Bordetella bronchiseptica RB50 2662106 NP_888784.1 CDS BB2241 NC_002927.3 2373605 2374120 D Similar to Salmonella typhimurium homology to phage-tail assembly proteins stm1869 SWALL:Q8ZNX8 (EMBL:AE008783) (177 aa) fasta scores: E(): 1.6e-08, 35.92% id in 167 aa, and to Bacteriophage N15 protein gp55 precursor 55 SWALL:VG55_BPN15 (SWALL:O64363) (181 aa) fasta scores: E(): 0.00029, 32.14% id in 168 aa; hypothetical protein 2373605..2374120 Bordetella bronchiseptica RB50 2662107 NP_888785.1 CDS BB2242 NC_002927.3 2374117 2374398 R no significant database matches; hypothetical protein complement(2374117..2374398) Bordetella bronchiseptica RB50 2660006 NP_888786.1 CDS BB2243 NC_002927.3 2374398 2375027 R no significant database matches; phage-like hypothetical protein complement(2374398..2375027) Bordetella bronchiseptica RB50 2660007 NP_888787.1 CDS BB2244 NC_002927.3 2375233 2375904 R Similar to Bacteriophage SPBc2 YoqW protein yoqW SWALL:O64131 (EMBL:AF020713) (224 aa) fasta scores: E(): 6.8e-10, 29.69% id in 229 aa, and to Salmonella typhimurium gifsy-2 prophage stm1053 SWALL:Q8ZQ78 (EMBL:AE008745) (208 aa) fasta scores: E(): 9.1e-17, 40% id in 185 aa; hypothetical protein complement(2375233..2375904) Bordetella bronchiseptica RB50 2660008 NP_888788.1 CDS BB2245 NC_002927.3 2376231 2376560 R ortholog of Bordetella pertussis (BX470248) BP1766; hypothetical protein complement(2376231..2376560) Bordetella bronchiseptica RB50 2662186 NP_888789.1 CDS phg NC_002927.3 2376943 2378190 D ortholog of Bordetella pertussis (BX470248) BP1767; autotransporter 2376943..2378190 Bordetella bronchiseptica RB50 2659247 NP_888790.1 CDS BB2247 NC_002927.3 2378265 2378546 D ortholog of Bordetella pertussis (BX470248) BP1768; hypothetical protein 2378265..2378546 Bordetella bronchiseptica RB50 2659194 NP_888791.1 CDS BB2248 NC_002927.3 2378588 2378908 D ortholog of Bordetella pertussis (BX470248) BP1769; hypothetical protein 2378588..2378908 Bordetella bronchiseptica RB50 2662616 NP_888792.1 CDS cspA NC_002927.3 2379173 2379418 D ortholog of Bordetella pertussis (BX470248) BP1770; cold shock-like protein 2379173..2379418 Bordetella bronchiseptica RB50 2662617 NP_888793.1 CDS BB2250 NC_002927.3 2379502 2380068 D ortholog of Bordetella pertussis (BX470248) BP1771; hypothetical protein 2379502..2380068 Bordetella bronchiseptica RB50 2661513 NP_888794.1 CDS cspA NC_002927.3 2380414 2380620 D ortholog of Bordetella pertussis (BX470248) BP1772; cold shock-like protein 2380414..2380620 Bordetella bronchiseptica RB50 2661514 NP_888795.1 CDS BB2252 NC_002927.3 2380718 2381296 R ortholog of Bordetella pertussis (BX470248) BP1773; hypothetical protein complement(2380718..2381296) Bordetella bronchiseptica RB50 2660585 NP_888796.1 CDS tig NC_002927.3 2381475 2382785 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2381475..2382785 Bordetella bronchiseptica RB50 2660871 NP_888797.1 CDS clpP NC_002927.3 2382788 2383441 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2382788..2383441 Bordetella bronchiseptica RB50 2661248 NP_888798.2 CDS clpX NC_002927.3 2383546 2384850 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding protein ClpX 2383546..2384850 Bordetella bronchiseptica RB50 2659700 NP_888799.1 CDS lon NC_002927.3 2385039 2387492 D ortholog of Bordetella pertussis (BX470248) BP1777; ATP-dependent protease La 2385039..2387492 Bordetella bronchiseptica RB50 2659314 NP_888800.1 CDS BB2257 NC_002927.3 2387624 2388574 R ortholog of Bordetella pertussis (BX470248) BP1778; LysR family transcriptional regulator complement(2387624..2388574) Bordetella bronchiseptica RB50 2660633 NP_888801.1 CDS BB2258 NC_002927.3 2388802 2390025 D ortholog of Bordetella pertussis (BX470248) BP1779; hypothetical protein 2388802..2390025 Bordetella bronchiseptica RB50 2659939 NP_888802.1 CDS BB2259 NC_002927.3 2390091 2391062 D ortholog of Bordetella pertussis (BX470248) BP1780; hypothetical protein 2390091..2391062 Bordetella bronchiseptica RB50 2659945 NP_888803.1 CDS BB2260 NC_002927.3 2391067 2391531 D ortholog of Bordetella pertussis (BX470248) BP1781; hypothetical protein 2391067..2391531 Bordetella bronchiseptica RB50 2661420 NP_888804.1 CDS BB2261 NC_002927.3 2391545 2392348 D ortholog of Bordetella pertussis (BX470248) BP1782; enoyl-CoA hydratase 2391545..2392348 Bordetella bronchiseptica RB50 2661446 NP_888805.1 CDS BB2262 NC_002927.3 2392345 2392776 D ortholog of Bordetella pertussis (BX470248) BP1783; hypothetical protein 2392345..2392776 Bordetella bronchiseptica RB50 2661492 NP_888806.1 CDS BB2263 NC_002927.3 2392773 2393930 D ortholog of Bordetella pertussis (BX470248) BP1784; thiolase 2392773..2393930 Bordetella bronchiseptica RB50 2661493 NP_888807.1 CDS fabG NC_002927.3 2393937 2394728 D ortholog of Bordetella pertussis (BX470248) BP1785; 3-oxoacyl-ACP reductase 2393937..2394728 Bordetella bronchiseptica RB50 2661573 NP_888808.1 CDS BB2265 NC_002927.3 2394725 2395888 D ortholog of Bordetella pertussis (BX470248) BP1786; acyl-CoA dehydrogenase 2394725..2395888 Bordetella bronchiseptica RB50 2659413 NP_888809.1 CDS BB2266 NC_002927.3 2395910 2396905 D ortholog of Bordetella pertussis (BX470248) BP1787; acyl-CoA dehydrogenase 2395910..2396905 Bordetella bronchiseptica RB50 2660437 NP_888810.1 CDS pcaI NC_002927.3 2396902 2397618 D ortholog of Bordetella pertussis (BX470248) BP1788; 3-oxoadipate CoA-transferase subunit A 2396902..2397618 Bordetella bronchiseptica RB50 2660639 NP_888811.1 CDS pcaJ NC_002927.3 2397611 2398252 D ortholog of Bordetella pertussis (BX470248) BP1789; 3-oxoadipate CoA-transferase subunit B 2397611..2398252 Bordetella bronchiseptica RB50 2660667 NP_888812.1 CDS BB2269 NC_002927.3 2398287 2399249 D ortholog of Bordetella pertussis (BX470248) BP1790; hypothetical protein 2398287..2399249 Bordetella bronchiseptica RB50 2660894 NP_888813.1 CDS BB2270 NC_002927.3 2399520 2401199 D ortholog of Bordetella pertussis (BX470248) BP1793; autotransporter 2399520..2401199 Bordetella bronchiseptica RB50 2660895 NP_888814.1 CDS lexA NC_002927.3 2401510 2402238 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(2401510..2402238) Bordetella bronchiseptica RB50 2660925 NP_888815.1 CDS tyrB NC_002927.3 2402289 2403491 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2402289..2403491) Bordetella bronchiseptica RB50 2660935 NP_888816.1 CDS uvrB NC_002927.3 2403569 2405596 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2403569..2405596 Bordetella bronchiseptica RB50 2659059 NP_888817.1 CDS ptpA NC_002927.3 2405858 2406349 D ortholog of Bordetella pertussis (BX470248) BP1797; low molecular weight protein-tyrosine-phosphatase 2405858..2406349 Bordetella bronchiseptica RB50 2661165 NP_888818.1 CDS BB2275 NC_002927.3 2406565 2407077 D ortholog of Bordetella pertussis (BX470248) BP1798; DNA-binding protein 2406565..2407077 Bordetella bronchiseptica RB50 2661300 NP_888819.1 CDS iscS NC_002927.3 2407095 2408306 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 2407095..2408306 Bordetella bronchiseptica RB50 2659751 NP_888820.1 CDS iscU NC_002927.3 2408340 2408750 D ortholog of Bordetella pertussis (BX470248) BP1800; scaffold protein 2408340..2408750 Bordetella bronchiseptica RB50 2659767 NP_888821.1 CDS iscA NC_002927.3 2408752 2409075 D ortholog of Bordetella pertussis (BX470248) BP1801; [Fe-S] cluster formation/repair protein 2408752..2409075 Bordetella bronchiseptica RB50 2662145 NP_888822.1 CDS hscB NC_002927.3 2409078 2409590 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2409078..2409590 Bordetella bronchiseptica RB50 2661321 NP_888823.2 CDS hscA NC_002927.3 2409720 2411582 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2409720..2411582 Bordetella bronchiseptica RB50 2661336 NP_888824.1 CDS fdx NC_002927.3 2411592 2411933 D ortholog of Bordetella pertussis (BX470248) BP1804; ferredoxin, 2Fe-2S 2411592..2411933 Bordetella bronchiseptica RB50 2660025 NP_888825.1 CDS BB2282 NC_002927.3 2411933 2412127 D ortholog of Bordetella pertussis (BX470248) BP1805; hypothetical protein 2411933..2412127 Bordetella bronchiseptica RB50 2660669 NP_888826.1 CDS BB2283 NC_002927.3 2412252 2413145 D ortholog of Bordetella pertussis (BX470248) BP1806; hypothetical protein 2412252..2413145 Bordetella bronchiseptica RB50 2660670 NP_888827.1 CDS BB2284 NC_002927.3 2413168 2413977 R ortholog of Bordetella pertussis (BX470248) BP1808; enoyl-CoA hydratase complement(2413168..2413977) Bordetella bronchiseptica RB50 2660686 NP_888828.1 CDS livG NC_002927.3 2414247 2415071 D ortholog of Bordetella pertussis (BX470248) BP1094; high-affinity branched-chain amino acid transport ATP-binding protein 2414247..2415071 Bordetella bronchiseptica RB50 2660858 NP_888829.1 CDS livH NC_002927.3 2415071 2415949 D ortholog of Bordetella pertussis (BX470248) BP1095; high-affinity branched-chain amino acid transport system permease 2415071..2415949 Bordetella bronchiseptica RB50 2660839 NP_888830.1 CDS livM NC_002927.3 2415953 2416990 D ortholog of Bordetella pertussis (BX470248) BP1096; high-affinity branched-chain amino acid transport system permease 2415953..2416990 Bordetella bronchiseptica RB50 2660880 NP_888831.1 CDS livK NC_002927.3 2417028 2418206 D ortholog of Bordetella pertussis (BX470248) BP1097; amino acids binding protein 2417028..2418206 Bordetella bronchiseptica RB50 2662164 NP_888832.1 CDS livF NC_002927.3 2418214 2419029 D ortholog of Bordetella pertussis (BX470248) BP1098; high-affinity branched-chain amino acid transport ATP-binding protein 2418214..2419029 Bordetella bronchiseptica RB50 2659403 NP_888833.1 CDS BB2290 NC_002927.3 2419026 2420891 D ortholog of Bordetella pertussis (BX470248) BP1099; long-chain fatty-acid--CoA ligase 2419026..2420891 Bordetella bronchiseptica RB50 2659172 NP_888834.1 CDS BB2291 NC_002927.3 2420970 2421602 D ortholog of Bordetella pertussis (BX470248) BP1100; TetR family transcriptional regulator 2420970..2421602 Bordetella bronchiseptica RB50 2660388 NP_888835.1 CDS BB2292 NC_002927.3 2421599 2421934 R ortholog of Bordetella pertussis (BX470248) BP1101; hypothetical protein complement(2421599..2421934) Bordetella bronchiseptica RB50 2663898 NP_888836.1 CDS lysS NC_002927.3 2421951 2423471 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(2421951..2423471) Bordetella bronchiseptica RB50 2663917 NP_888837.1 CDS BB2294 NC_002927.3 2423478 2424233 R ortholog of Bordetella pertussis (BX470248) BP1103; short chain dehydrogenase complement(2423478..2424233) Bordetella bronchiseptica RB50 2660640 NP_888838.1 CDS prfB NC_002927.3 2424263 2425367 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(join(2424263..2425285,2425287..2425367)) Bordetella bronchiseptica RB50 2660706 NP_888839.1 CDS recJ NC_002927.3 2425470 2427038 R ortholog of Bordetella pertussis (BX470248) BP1105; single-stranded-DNA-specific exonuclease complement(2425470..2427038) Bordetella bronchiseptica RB50 2660916 NP_888840.1 CDS BB2297 NC_002927.3 2427152 2428129 R ortholog of Bordetella pertussis (BX470248) BP1106; hypothetical protein complement(2427152..2428129) Bordetella bronchiseptica RB50 2662230 NP_888841.1 CDS lolC NC_002927.3 2428187 2429419 D ortholog of Bordetella pertussis (BX470248) BP1107; lipoprotein releasing system transmembrane protein 2428187..2429419 Bordetella bronchiseptica RB50 2661140 NP_888842.1 CDS lolD NC_002927.3 2429412 2430107 D ortholog of Bordetella pertussis (BX470248) BP1108; lipoprotein releasing system ATP-binding protein 2429412..2430107 Bordetella bronchiseptica RB50 2660047 NP_888843.1 CDS BB2300 NC_002927.3 2430141 2430968 D ortholog of Bordetella pertussis (BX470248) BP1109; deoxyribonuclease 2430141..2430968 Bordetella bronchiseptica RB50 2659613 NP_888844.1 CDS sphB3 NC_002927.3 2431250 2434480 D ortholog of Bordetella pertussis (BX470248) BP1110; serine protease 2431250..2434480 Bordetella bronchiseptica RB50 2662187 NP_888845.1 CDS BB2302 NC_002927.3 2435248 2435424 D ortholog of Bordetella pertussis (BX470248) BP1111; no significant database matches; hypothetical protein 2435248..2435424 Bordetella bronchiseptica RB50 2660208 NP_888846.1 CDS bipA NC_002927.3 2435715 2440451 D ortholog of Bordetella pertussis (BX470248) BP1112; outer membrane ligand binding protein 2435715..2440451 Bordetella bronchiseptica RB50 2659760 NP_888847.1 CDS BB2304 NC_002927.3 2440624 2443098 D ortholog of Bordetella pertussis (BX470248) BP1113; competence protein 2440624..2443098 Bordetella bronchiseptica RB50 2660108 NP_888848.1 CDS BB2305 NC_002927.3 2443098 2444066 D ortholog of Bordetella pertussis (BX470248) BP1115; hydrolase 2443098..2444066 Bordetella bronchiseptica RB50 2659768 NP_888849.1 CDS BB2306 NC_002927.3 2444136 2444981 D ortholog of Bordetella pertussis (BX470248) BP1116; hypothetical protein 2444136..2444981 Bordetella bronchiseptica RB50 2659909 NP_888850.1 CDS greB NC_002927.3 2445049 2445603 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 2445049..2445603 Bordetella bronchiseptica RB50 2659950 NP_888851.1 CDS BB2308 NC_002927.3 2445794 2446822 R ortholog of Bordetella pertussis (BX470248) BP2671; hypothetical protein complement(2445794..2446822) Bordetella bronchiseptica RB50 2661392 NP_888852.1 CDS BB2309 NC_002927.3 2446902 2448200 R ortholog of Bordetella pertussis (BX470248) BP2670; membrane permease complement(2446902..2448200) Bordetella bronchiseptica RB50 2661393 NP_888853.1 CDS BB2310 NC_002927.3 2448197 2448778 R ortholog of Bordetella pertussis (BX470248) BP2669; integral membrane protein complement(2448197..2448778) Bordetella bronchiseptica RB50 2660708 NP_888854.1 CDS purL NC_002927.3 2449091 2453137 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 2449091..2453137 Bordetella bronchiseptica RB50 2660940 NP_888855.1 CDS fhaS NC_002927.3 2453379 2462999 D ortholog of Bordetella pertussis (BX470248) BP2667; adhesin 2453379..2462999 Bordetella bronchiseptica RB50 2661997 NP_888856.1 CDS BB2313 NC_002927.3 2463092 2464564 D peptidase 2463092..2464564 Bordetella bronchiseptica RB50 2659285 NP_888857.1 CDS BB2314 NC_002927.3 2464598 2465149 D hypothetical protein 2464598..2465149 Bordetella bronchiseptica RB50 2659286 NP_888858.1 CDS BB2315 NC_002927.3 2465264 2466556 R acyl coenzyme A thioester hydrolase complement(2465264..2466556) Bordetella bronchiseptica RB50 2662053 NP_888859.1 CDS BB2316 NC_002927.3 2466568 2467554 R hypothetical protein complement(2466568..2467554) Bordetella bronchiseptica RB50 2662054 NP_888860.1 CDS BB2317 NC_002927.3 2467752 2468588 R hypothetical protein complement(2467752..2468588) Bordetella bronchiseptica RB50 2660058 NP_888861.1 CDS BB2318 NC_002927.3 2468880 2469677 D hypothetical protein 2468880..2469677 Bordetella bronchiseptica RB50 2660059 NP_888862.1 CDS BB2319 NC_002927.3 2469674 2470489 D thiol:disulfide interchange protein 2469674..2470489 Bordetella bronchiseptica RB50 2662185 NP_888863.1 CDS dsbG NC_002927.3 2470519 2471355 D Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 2470519..2471355 Bordetella bronchiseptica RB50 2663953 NP_888864.1 CDS BB2321 NC_002927.3 2471352 2471669 D hypothetical protein 2471352..2471669 Bordetella bronchiseptica RB50 2660522 NP_888865.1 CDS BB2322 NC_002927.3 2472130 2472804 R hypothetical protein complement(2472130..2472804) Bordetella bronchiseptica RB50 2660523 NP_888866.1 CDS BB2323 NC_002927.3 2473117 2474244 D ortholog of Bordetella pertussis (BX470248) BP2629; transcriptional regulator 2473117..2474244 Bordetella bronchiseptica RB50 2660524 NP_888867.1 CDS BB2324 NC_002927.3 2474494 2476650 D ortholog of Bordetella pertussis (BX470248) BP2627; autotransporter 2474494..2476650 Bordetella bronchiseptica RB50 2659789 NP_888868.1 CDS BB2325 NC_002927.3 2476647 2477258 R ortholog of Bordetella pertussis (BX470248) BP2626; hypothetical protein complement(2476647..2477258) Bordetella bronchiseptica RB50 2659794 NP_888869.1 CDS guaB NC_002927.3 2477481 2478941 D ortholog of Bordetella pertussis (BX470248) BP2625; inosine-5'-monophosphate dehydrogenase 2477481..2478941 Bordetella bronchiseptica RB50 2661361 NP_888870.1 CDS guaA NC_002927.3 2479038 2480630 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2479038..2480630 Bordetella bronchiseptica RB50 2661990 NP_888871.1 CDS BB2329 NC_002927.3 2481226 2481915 R ortholog of Bordetella pertussis (BX470248) BP2621; TetR family transcriptional regulator complement(2481226..2481915) Bordetella bronchiseptica RB50 2659218 NP_888872.1 CDS BB2330 NC_002927.3 2481928 2483358 D ortholog of Bordetella pertussis (BX470248) BP2620; membrane efflux protein 2481928..2483358 Bordetella bronchiseptica RB50 2662239 NP_888873.1 CDS BB2331 NC_002927.3 2483391 2484647 R hypothetical protein complement(2483391..2484647) Bordetella bronchiseptica RB50 2659117 NP_888874.1 CDS BB2332 NC_002927.3 2484757 2485203 D transcriptional regulator 2484757..2485203 Bordetella bronchiseptica RB50 2659008 NP_888875.1 CDS BB2333 NC_002927.3 2485289 2486368 D ortholog of Bordetella pertussis (BX470248) BP2619; Similar to Pyrococcus abyssi C4-dicarboxylate transporter pab2393 SWALL:Q9V0I5 (EMBL:AJ248285) (339 aa) fasta scores: E(): 1.4e-10, 25.14% id in 350 aa, and to Methanococcus jannaschii hypothetical protein Mj0762 SWALL:Y762_METJA (SWALL:Q58172) (342 aa) fasta scores: E(): 1.1e-14, 25.46% id in 322 aa; C4-dicarboxylate ABC transporter permease 2485289..2486368 Bordetella bronchiseptica RB50 2661933 NP_888876.1 CDS opdE NC_002927.3 2486406 2487632 R Similar to Pseudomonas aeruginosa transcription regulatory protein OpdE or pa2219 SWALL:OPDE_PSEAE (SWALL:Q01602) (402 aa) fasta scores: E(): 9.5e-112, 77.09% id in 393 aa, and to Xylella fastidiosa transcriptional regulator xf1749 SWALL:Q9PCM9 (EMBL:AE003997) (409 aa) fasta scores: E(): 3.6e-122, 84.42% id in 398 aa; transporter complement(2486406..2487632) Bordetella bronchiseptica RB50 2660893 NP_888877.1 CDS BB2335 NC_002927.3 2487651 2487782 R Similar to the C-terminal region of Xylella fastidiosa hypothetical protein Xf1750 SWALL:Q9PCM8 (EMBL:AE003998) (378 aa) fasta scores: E(): 2.4e-06, 71.87% id in 32 aa; hypothetical protein complement(2487651..2487782) Bordetella bronchiseptica RB50 2660183 NP_888878.1 CDS BB2336 NC_002927.3 2487852 2488331 R Similar to Xylella fastidiosa hypothetical protein Xf1751 xf1751 SWALL:Q9PCM7 (EMBL:AE003998) (167 aa) fasta scores: E(): 3.1e-37, 69.75% id in 162 aa, and to Ralstonia solanacearum hypothetical protein rsc0630 rsc0630 or rs01532 SWALL:Q8Y1Q9 (EMBL:AL646060) (118 aa) fasta scores: E(): 1.1e-18, 52.13% id in 117 aa; hypothetical protein complement(2487852..2488331) Bordetella bronchiseptica RB50 2661848 NP_888879.1 CDS BB2337 NC_002927.3 2488439 2489398 D Similar to Pseudomonas aeruginosa transcriptional regulator pa2220 SWALL:OPRR_PSEAE (SWALL:Q01610) (306 aa) fasta scores: E(): 1.8e-95, 81.35% id in 295 aa, and to Xylella fastidiosa transcriptional regulator xf1752 SWALL:Q9PCM6 (EMBL:AE003998) (324 aa) fasta scores: E(): 1.9e-105, 83.75% id in 314 aa; LysR family transcriptional regulator 2488439..2489398 Bordetella bronchiseptica RB50 2661849 NP_888880.1 CDS BB2338 NC_002927.3 2489320 2490729 R ortholog of Bordetella pertussis (BX470248) BP2611; transcriptional regulator complement(2489320..2490729) Bordetella bronchiseptica RB50 2659745 NP_888881.1 CDS BB2339 NC_002927.3 2490790 2492517 R ortholog of Bordetella pertussis (BX470248) BP2610; solute transport protein complement(2490790..2492517) Bordetella bronchiseptica RB50 2659746 NP_888882.1 CDS BB2340 NC_002927.3 2492629 2493987 D ortholog of Bordetella pertussis (BX470248) BP2609; hypothetical protein 2492629..2493987 Bordetella bronchiseptica RB50 2663905 NP_888883.1 CDS BB2341 NC_002927.3 2494007 2494912 R AraC family transcriptional regulator complement(2494007..2494912) Bordetella bronchiseptica RB50 2659204 NP_888884.1 CDS BB2342 NC_002927.3 2495196 2496185 D hypothetical protein 2495196..2496185 Bordetella bronchiseptica RB50 2659772 NP_888885.1 CDS BB2343 NC_002927.3 2496211 2497302 D hypothetical protein 2496211..2497302 Bordetella bronchiseptica RB50 2661826 NP_888886.1 CDS BB2344 NC_002927.3 2497367 2498353 R Similar to Rhizobium meliloti hypothetical protein ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 5.2e-47, 43.97% id in 332 aa, and to Agrobacterium tumefaciens hypothetical protein atu4727 or agr_l_312 SWALL:Q8U6S9 (EMBL:AE009401) (329 aa) fasta scores: E(): 1.5e-45, 44.23% id in 321 aa; hypothetical protein complement(2497367..2498353) Bordetella bronchiseptica RB50 2661827 NP_888887.1 CDS BB2345 NC_002927.3 2498655 2499653 D hypothetical protein 2498655..2499653 Bordetella bronchiseptica RB50 2659731 NP_888888.1 CDS BB2346 NC_002927.3 2499783 2501036 D acyl-CoA transferase/carnitine dehydratase 2499783..2501036 Bordetella bronchiseptica RB50 2659732 NP_888889.1 CDS BB2347 NC_002927.3 2501038 2502183 D hypothetical protein 2501038..2502183 Bordetella bronchiseptica RB50 2661842 NP_888890.1 CDS BB2348 NC_002927.3 2502207 2502623 D hypothetical protein 2502207..2502623 Bordetella bronchiseptica RB50 2661846 NP_888891.1 CDS BB2349 NC_002927.3 2502639 2503544 D 2-pyrone-4,6-dicarboxylic acid hydrolase 2502639..2503544 Bordetella bronchiseptica RB50 2661847 NP_888892.1 CDS BB2350 NC_002927.3 2503541 2504893 D hypothetical protein 2503541..2504893 Bordetella bronchiseptica RB50 2659079 NP_888893.1 CDS gabG NC_002927.3 2504905 2506428 D succinate-semialdehyde dehydrogenase 2504905..2506428 Bordetella bronchiseptica RB50 2659080 NP_888894.1 CDS BB2352 NC_002927.3 2506421 2507410 R LysR family transcriptional regulator complement(2506421..2507410) Bordetella bronchiseptica RB50 2660107 NP_888895.1 CDS BB2353 NC_002927.3 2507420 2508481 R hypothetical protein complement(2507420..2508481) Bordetella bronchiseptica RB50 2661871 NP_888896.1 CDS BB2354 NC_002927.3 2508675 2509664 D hypothetical protein 2508675..2509664 Bordetella bronchiseptica RB50 2662654 NP_888897.1 CDS BB2355 NC_002927.3 2509826 2510896 D ortholog of Bordetella pertussis (BX470248) BP2607; hypothetical protein 2509826..2510896 Bordetella bronchiseptica RB50 2662655 NP_888898.1 CDS BB2357 NC_002927.3 2512508 2513131 D ortholog of Bordetella pertussis (BX470248) BP2598; hypothetical protein 2512508..2513131 Bordetella bronchiseptica RB50 2661836 NP_888899.1 CDS BB2358 NC_002927.3 2513162 2513773 D ortholog of Bordetella pertussis (BX470248) BP2597; membrane transport protein 2513162..2513773 Bordetella bronchiseptica RB50 2661821 NP_888900.1 CDS BB2359 NC_002927.3 2513809 2514279 D ortholog of Bordetella pertussis (BX470248) BP2596; hypothetical protein 2513809..2514279 Bordetella bronchiseptica RB50 2661833 NP_888901.1 CDS BB2360 NC_002927.3 2514454 2515710 D ortholog of Bordetella pertussis (BX470248) BP2595; peptidase 2514454..2515710 Bordetella bronchiseptica RB50 2661834 NP_888902.1 CDS BB2361 NC_002927.3 2515747 2517261 D ortholog of Bordetella pertussis (BX470248) BP2594; ABC transporter substrate-binding protein 2515747..2517261 Bordetella bronchiseptica RB50 2660009 NP_888903.1 CDS BB2362 NC_002927.3 2517265 2518224 D ortholog of Bordetella pertussis (BX470248) BP2593; ABC transporter 2517265..2518224 Bordetella bronchiseptica RB50 2661229 NP_888904.1 CDS BB2363 NC_002927.3 2518253 2519056 D ortholog of Bordetella pertussis (BX470248) BP2592; ABC transporter 2518253..2519056 Bordetella bronchiseptica RB50 2661837 NP_888905.1 CDS BB2364 NC_002927.3 2519058 2520692 D ortholog of Bordetella pertussis (BX470248) BP2591; ABC transporter ATP-binding protein 2519058..2520692 Bordetella bronchiseptica RB50 2661982 NP_888906.1 CDS BB2365 NC_002927.3 2520776 2521837 D ortholog of Bordetella pertussis (BX470248) BP2590; LacI family transcriptional regulator 2520776..2521837 Bordetella bronchiseptica RB50 2662088 NP_888907.1 CDS BB2366 NC_002927.3 2522309 2522833 D ortholog of Bordetella pertussis (BX470248) BP2589; DNA-binding protein 2522309..2522833 Bordetella bronchiseptica RB50 2660915 NP_888908.1 CDS BB2367 NC_002927.3 2522842 2523333 R ortholog of Bordetella pertussis (BX470248) BP2588; regulatory protein complement(2522842..2523333) Bordetella bronchiseptica RB50 2661332 NP_888909.1 CDS BB2368 NC_002927.3 2523384 2523878 D hypothetical protein 2523384..2523878 Bordetella bronchiseptica RB50 2659951 NP_888910.1 CDS BB2369 NC_002927.3 2523919 2525073 R hypothetical protein complement(2523919..2525073) Bordetella bronchiseptica RB50 2659814 NP_888911.1 CDS BB2370 NC_002927.3 2525070 2525936 R (R)-specific enoyl-CoA hydratase complement(2525070..2525936) Bordetella bronchiseptica RB50 2661214 NP_888912.1 CDS BB2371 NC_002927.3 2525950 2526918 R hypothetical protein complement(2525950..2526918) Bordetella bronchiseptica RB50 2661215 NP_888913.1 CDS BB2372 NC_002927.3 2526944 2527687 R GntR family transcriptional regulator complement(2526944..2527687) Bordetella bronchiseptica RB50 2659200 NP_888914.1 CDS BB2373 NC_002927.3 2527869 2528858 R hypothetical protein complement(2527869..2528858) Bordetella bronchiseptica RB50 2659133 NP_888915.1 CDS BB2374 NC_002927.3 2528894 2529964 R malate/L-lactate dehydrogenase complement(2528894..2529964) Bordetella bronchiseptica RB50 2662030 NP_888916.1 CDS BB2375 NC_002927.3 2529976 2531166 R FAD dependent oxidoreductase complement(2529976..2531166) Bordetella bronchiseptica RB50 2662031 NP_888917.1 CDS proC NC_002927.3 2531278 2532072 D pyrroline-5-carboxylate reductase 2531278..2532072 Bordetella bronchiseptica RB50 2660074 NP_888918.1 CDS BB2377 NC_002927.3 2532088 2532741 R GntR family transcriptional regulator complement(2532088..2532741) Bordetella bronchiseptica RB50 2659211 NP_888919.1 CDS BB2378 NC_002927.3 2532961 2533437 D hypothetical protein 2532961..2533437 Bordetella bronchiseptica RB50 2659368 NP_888920.1 CDS BB2379 NC_002927.3 2533447 2534934 R outer membrane efflux protein complement(2533447..2534934) Bordetella bronchiseptica RB50 2659369 NP_888921.1 CDS BB2380 NC_002927.3 2534949 2536070 R hypothetical protein complement(2534949..2536070) Bordetella bronchiseptica RB50 2661560 NP_888922.1 CDS BB2381 NC_002927.3 2536077 2537216 R hypothetical protein complement(2536077..2537216) Bordetella bronchiseptica RB50 2659359 NP_888923.1 CDS BB2382 NC_002927.3 2537213 2538973 R ABC transporter ATP-binding protein complement(2537213..2538973) Bordetella bronchiseptica RB50 2661857 NP_888924.1 CDS BB2383 NC_002927.3 2538970 2539983 R hemolysin D complement(2538970..2539983) Bordetella bronchiseptica RB50 2662063 NP_888925.1 CDS BB2384 NC_002927.3 2540102 2540749 D TetR family transcriptional regulator 2540102..2540749 Bordetella bronchiseptica RB50 2662064 NP_888926.1 CDS BB2385 NC_002927.3 2540809 2542569 D hypothetical protein 2540809..2542569 Bordetella bronchiseptica RB50 2661985 NP_888927.1 CDS BB2386 NC_002927.3 2542570 2543415 R aldo/keto reductase-family protein complement(2542570..2543415) Bordetella bronchiseptica RB50 2659733 NP_888928.1 CDS BB2387 NC_002927.3 2543458 2545326 R ortholog of Bordetella pertussis (BX470248) BP2158; sigma-54-dependent transcriptional regulator complement(2543458..2545326) Bordetella bronchiseptica RB50 2659143 NP_888929.1 CDS acoD NC_002927.3 2545584 2547113 D ortholog of Bordetella pertussis (BX470248) BP2157; aldehyde dehydrogenase 2545584..2547113 Bordetella bronchiseptica RB50 2660642 NP_888930.1 CDS BB2389 NC_002927.3 2547250 2547900 R ortholog of Bordetella pertussis (BX470248) BP2156; hypothetical protein complement(2547250..2547900) Bordetella bronchiseptica RB50 2661251 NP_888931.1 CDS BB2390 NC_002927.3 2548032 2548958 D ortholog of Bordetella pertussis (BX470248) BP2154; LysR family transcriptional regulator 2548032..2548958 Bordetella bronchiseptica RB50 2659514 NP_888932.1 CDS BB2391 NC_002927.3 2548955 2550250 D ortholog of Bordetella pertussis (BX470248) BP2153; hypothetical protein 2548955..2550250 Bordetella bronchiseptica RB50 2660558 NP_888933.1 CDS BB2392 NC_002927.3 2550272 2551156 R ortholog of Bordetella pertussis (BX470248) BP2152; lysR family transcriptional regulator complement(2550272..2551156) Bordetella bronchiseptica RB50 2659999 NP_888934.1 CDS BB2393 NC_002927.3 2551255 2552130 D ortholog of Bordetella pertussis (BX470248) BP2151; oxidoreductase 2551255..2552130 Bordetella bronchiseptica RB50 2659260 NP_888935.1 CDS BB2394 NC_002927.3 2552120 2552476 R ortholog of Bordetella pertussis (BX470248) BP2150; hypothetical protein complement(2552120..2552476) Bordetella bronchiseptica RB50 2662100 NP_888936.1 CDS BB2395 NC_002927.3 2552550 2553581 D ortholog of Bordetella pertussis (BX470248) BP2149; AraC family transcriptional regulator 2552550..2553581 Bordetella bronchiseptica RB50 2661319 NP_888937.1 CDS BB2396 NC_002927.3 2553754 2553933 R ortholog of Bordetella pertussis (BX470248) BP2148; hypothetical protein complement(2553754..2553933) Bordetella bronchiseptica RB50 2659641 NP_888938.1 CDS BB2398 NC_002927.3 2554031 2554555 D ortholog of Bordetella pertussis (BX470248) BP2147; hypothetical protein 2554031..2554555 Bordetella bronchiseptica RB50 2659642 NP_888939.1 CDS BB2399 NC_002927.3 2554566 2555402 R ortholog of Bordetella pertussis (BX470248) BP2146; hypothetical protein complement(2554566..2555402) Bordetella bronchiseptica RB50 2661158 NP_888940.1 CDS BB2400 NC_002927.3 2555515 2555886 D ortholog of Bordetella pertussis (BX470248) BP2145; ArsR family transcriptional regulator 2555515..2555886 Bordetella bronchiseptica RB50 2660546 NP_888941.1 CDS BB2401 NC_002927.3 2555883 2556434 D ortholog of Bordetella pertussis (BX470248) BP2144; hypothetical protein 2555883..2556434 Bordetella bronchiseptica RB50 2659289 NP_888942.1 CDS BB2402 NC_002927.3 2556450 2558141 R ortholog of Bordetella pertussis (BX470248) BP2143; sulfate transporter complement(2556450..2558141) Bordetella bronchiseptica RB50 2659290 NP_888943.1 CDS BB2403 NC_002927.3 2558190 2558870 R ortholog of Bordetella pertussis (BX470248) BP2142; GntR family transcriptional regulator complement(2558190..2558870) Bordetella bronchiseptica RB50 2658961 NP_888944.1 CDS BB2404 NC_002927.3 2559119 2559577 R ortholog of Bordetella pertussis (BX470248) BP2141; hypothetical protein complement(2559119..2559577) Bordetella bronchiseptica RB50 2663825 NP_888945.1 CDS BB2405 NC_002927.3 2559747 2560676 D ortholog of Bordetella pertussis (BX470248) BP2140; hypothetical protein 2559747..2560676 Bordetella bronchiseptica RB50 2663826 NP_888946.1 CDS BB2406 NC_002927.3 2560689 2561336 R ortholog of Bordetella pertussis (BX470248) BP2139; lipoprotein complement(2560689..2561336) Bordetella bronchiseptica RB50 2661507 NP_888947.1 CDS BB2407 NC_002927.3 2561410 2563227 R ortholog of Bordetella pertussis (BX470248) BP2138; ABC transporter ATP-binding protein complement(2561410..2563227) Bordetella bronchiseptica RB50 2662619 NP_888948.1 CDS BB2408 NC_002927.3 2563311 2563862 R ortholog of Bordetella pertussis (BX470248) BP2136; acetyltransferase complement(2563311..2563862) Bordetella bronchiseptica RB50 2661207 NP_888949.1 CDS BB2409 NC_002927.3 2563917 2564111 D hypothetical protein 2563917..2564111 Bordetella bronchiseptica RB50 2659282 NP_888950.1 CDS BB2410 NC_002927.3 2564130 2564477 R ortholog of Bordetella pertussis (BX470248) BP2134; hypothetical protein complement(2564130..2564477) Bordetella bronchiseptica RB50 2659283 NP_888951.1 CDS BB2411 NC_002927.3 2564506 2565945 R ortholog of Bordetella pertussis (BX470248) BP2133; transmembrane efflux protein complement(2564506..2565945) Bordetella bronchiseptica RB50 2659121 NP_888952.1 CDS BB2412 NC_002927.3 2565964 2566383 R ortholog of Bordetella pertussis (BX470248) BP2132; hypothetical protein complement(2565964..2566383) Bordetella bronchiseptica RB50 2661249 NP_888953.1 CDS BB2413 NC_002927.3 2566534 2567142 D ortholog of Bordetella pertussis (BX470248) BP2131; hypothetical protein 2566534..2567142 Bordetella bronchiseptica RB50 2661250 NP_888954.1 CDS BB2414 NC_002927.3 2567155 2567973 D ortholog of Bordetella pertussis (BX470248) BP2130; hypothetical protein 2567155..2567973 Bordetella bronchiseptica RB50 2659074 NP_888955.1 CDS BB2415 NC_002927.3 2567925 2568899 R ortholog of Bordetella pertussis (BX470248) BP2129; AraC family transcriptional regulator complement(2567925..2568899) Bordetella bronchiseptica RB50 2659075 NP_888956.1 CDS BB2416 NC_002927.3 2568928 2569989 R ortholog of Bordetella pertussis (BX470248) BP2128; hypothetical protein complement(2568928..2569989) Bordetella bronchiseptica RB50 2659077 NP_888957.1 CDS BB2417 NC_002927.3 2569986 2572199 R ortholog of Bordetella pertussis (BX470248) BP2127; oxidoreductase subunit complement(2569986..2572199) Bordetella bronchiseptica RB50 2659108 NP_888958.1 CDS BB2418 NC_002927.3 2572213 2572671 R ortholog of Bordetella pertussis (BX470248) BP2126; oxidoreductase subunit complement(2572213..2572671) Bordetella bronchiseptica RB50 2660535 NP_888959.1 CDS BB2419 NC_002927.3 2572829 2573173 R ortholog of Bordetella pertussis (BX470248) BP2125A; hypothetical protein complement(2572829..2573173) Bordetella bronchiseptica RB50 2661473 NP_888960.1 CDS BB2420 NC_002927.3 2573366 2574235 D ortholog of Bordetella pertussis (BX470248) BP2125; lysR family transcriptional regulator 2573366..2574235 Bordetella bronchiseptica RB50 2661474 NP_888961.1 CDS BB2421 NC_002927.3 2574322 2575335 D ortholog of Bordetella pertussis (BX470248) BP2124; hypothetical protein 2574322..2575335 Bordetella bronchiseptica RB50 2661488 NP_888962.1 CDS aroG NC_002927.3 2575343 2576461 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2575343..2576461) Bordetella bronchiseptica RB50 2661828 NP_888963.1 CDS BB2423 NC_002927.3 2576583 2577227 R ortholog of Bordetella pertussis (BX470248) BP2122; hypothetical protein complement(2576583..2577227) Bordetella bronchiseptica RB50 2661829 NP_888964.1 CDS gor NC_002927.3 2577429 2578781 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(2577429..2578781) Bordetella bronchiseptica RB50 2662011 NP_888965.1 CDS BB2425 NC_002927.3 2578956 2579252 D ortholog of Bordetella pertussis (BX470248) BP2119; hypothetical protein 2578956..2579252 Bordetella bronchiseptica RB50 2662594 NP_888966.1 CDS BB2426 NC_002927.3 2579277 2579654 D hypothetical protein 2579277..2579654 Bordetella bronchiseptica RB50 2662623 NP_888967.1 CDS BB2427 NC_002927.3 2579695 2580390 D glutathione S-transferase 2579695..2580390 Bordetella bronchiseptica RB50 2660626 NP_888968.1 CDS BB2428 NC_002927.3 2580401 2581882 R GntR family transcriptional regulator complement(2580401..2581882) Bordetella bronchiseptica RB50 2660316 NP_888969.1 CDS BB2429 NC_002927.3 2581959 2582669 D GNAT family acetyltransferase 2581959..2582669 Bordetella bronchiseptica RB50 2660308 NP_888970.1 CDS BB2430 NC_002927.3 2582772 2583698 R integral membrane protein complement(2582772..2583698) Bordetella bronchiseptica RB50 2660671 NP_888971.1 CDS BB2431 NC_002927.3 2583701 2584036 R thioredoxin complement(2583701..2584036) Bordetella bronchiseptica RB50 2659064 NP_888972.1 CDS amaB NC_002927.3 2584094 2585356 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(2584094..2585356) Bordetella bronchiseptica RB50 2661776 NP_888973.1 CDS norM NC_002927.3 2585386 2586768 R multidrug resistance protein complement(2585386..2586768) Bordetella bronchiseptica RB50 2659284 NP_888974.1 CDS pckG NC_002927.3 2586956 2588812 D catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 2586956..2588812 Bordetella bronchiseptica RB50 2659771 NP_888975.1 CDS BB2435 NC_002927.3 2588873 2589496 D hypothetical protein 2588873..2589496 Bordetella bronchiseptica RB50 2661533 NP_888976.1 CDS BB2436 NC_002927.3 2589550 2590017 D hypothetical protein 2589550..2590017 Bordetella bronchiseptica RB50 2661534 NP_888977.1 CDS BB2437 NC_002927.3 2590150 2591013 R hypothetical protein complement(2590150..2591013) Bordetella bronchiseptica RB50 2661535 NP_888978.1 CDS BB2438 NC_002927.3 2591010 2591972 R 3-hydroxybutyryl-CoA dehydrogenase complement(2591010..2591972) Bordetella bronchiseptica RB50 2661015 NP_888979.1 CDS BB2439 NC_002927.3 2592087 2593088 D LysR family transcriptional regulator 2592087..2593088 Bordetella bronchiseptica RB50 2662108 NP_888980.1 CDS BB2440 NC_002927.3 2593012 2594304 R hypothetical protein complement(2593012..2594304) Bordetella bronchiseptica RB50 2662216 NP_888981.1 CDS BB2441 NC_002927.3 2594297 2594788 R hypothetical protein complement(2594297..2594788) Bordetella bronchiseptica RB50 2660957 NP_888982.1 CDS BB2442 NC_002927.3 2594798 2595829 R C4-dicarboxylate ABC transporter substrate-binding protein complement(2594798..2595829) Bordetella bronchiseptica RB50 2661202 NP_888983.1 CDS BB2443 NC_002927.3 2595885 2596844 R hypothetical protein complement(2595885..2596844) Bordetella bronchiseptica RB50 2658992 NP_888984.1 CDS BB2444 NC_002927.3 2596832 2597638 R hypothetical protein complement(2596832..2597638) Bordetella bronchiseptica RB50 2658993 NP_888985.1 CDS BB2445 NC_002927.3 2597635 2598531 R dehydrogenase complement(2597635..2598531) Bordetella bronchiseptica RB50 2658994 NP_888986.1 CDS ilvD NC_002927.3 2598528 2600240 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(2598528..2600240) Bordetella bronchiseptica RB50 2662097 NP_888987.1 CDS BB2447 NC_002927.3 2600281 2600961 R GntR family transcriptional regulator complement(2600281..2600961) Bordetella bronchiseptica RB50 2659484 NP_888988.1 CDS BB2448 NC_002927.3 2601157 2602647 R Similar to Rhizobium meliloti hypothetical signal peptide protein smc01185 r01608 or smc01185 SWALL:Q92PW5 (EMBL:AL591787) (495 aa) fasta scores: E(): 2.1e-147, 71.51% id in 488 aa; hypothetical protein complement(2601157..2602647) Bordetella bronchiseptica RB50 2659233 NP_888989.1 CDS BB2449 NC_002927.3 2602731 2604182 R Similar to Rhizobium meliloti hypothetical transmembrane protein smc01184 r01609 or smc01184 SWALL:Q92PW4 (EMBL:AL591787) (512 aa) fasta scores: E(): 2.8e-135, 68.44% id in 469 aa; hypothetical protein complement(2602731..2604182) Bordetella bronchiseptica RB50 2661966 NP_888990.1 CDS BB2450 NC_002927.3 2604437 2605345 D Weakly similar to Pseudomonas putida EbdR protein ebdR SWALL:Q9K4R5 (EMBL:AJ293588) (332 aa) fasta scores: E(): 0.036, 25.81% id in 275 aa; hypothetical protein 2604437..2605345 Bordetella bronchiseptica RB50 2661967 NP_888991.1 CDS BB2451 NC_002927.3 2605384 2606070 R GntR family transcriptional regulator complement(2605384..2606070) Bordetella bronchiseptica RB50 2661968 NP_888992.1 CDS ilvD NC_002927.3 2606077 2607819 R catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase complement(2606077..2607819) Bordetella bronchiseptica RB50 2660466 NP_888993.1 CDS BB2453 NC_002927.3 2608052 2609056 D hypothetical protein 2608052..2609056 Bordetella bronchiseptica RB50 2660543 NP_888994.1 CDS alkJ NC_002927.3 2609070 2610707 R alcohol dehydrogenase complement(2609070..2610707) Bordetella bronchiseptica RB50 2661274 NP_888995.1 CDS BB2455 NC_002927.3 2610724 2611731 R hypothetical protein complement(2610724..2611731) Bordetella bronchiseptica RB50 2661962 NP_888996.1 CDS BB2456 NC_002927.3 2611754 2612575 R taurine ABC transporter ATP-binding protein complement(2611754..2612575) Bordetella bronchiseptica RB50 2661963 NP_888997.1 CDS BB2457 NC_002927.3 2612595 2613362 R taurine ABC transporter permease complement(2612595..2613362) Bordetella bronchiseptica RB50 2662141 NP_888998.1 CDS BB2458 NC_002927.3 2613462 2614187 D GntR family transcriptional regulator 2613462..2614187 Bordetella bronchiseptica RB50 2660715 NP_888999.1 CDS BB2459 NC_002927.3 2614195 2615343 D mandelate racemase/muconate lactonizing enzyme 2614195..2615343 Bordetella bronchiseptica RB50 2659186 NP_889000.1 CDS BB2460 NC_002927.3 2615359 2616279 R LysR family transcriptional regulator complement(2615359..2616279) Bordetella bronchiseptica RB50 2660115 NP_889001.1 CDS BB2461 NC_002927.3 2616394 2617134 D member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria; short chain dehydrogenase 2616394..2617134 Bordetella bronchiseptica RB50 2659173 NP_889002.1 CDS BB2462 NC_002927.3 2617266 2617958 R lipoprotein complement(2617266..2617958) Bordetella bronchiseptica RB50 2659671 NP_889003.1 CDS BB2463 NC_002927.3 2618319 2618741 D hypothetical protein 2618319..2618741 Bordetella bronchiseptica RB50 2661553 NP_889004.1 CDS BB2464 NC_002927.3 2618863 2620056 D hypothetical protein 2618863..2620056 Bordetella bronchiseptica RB50 2661554 NP_889005.1 CDS BB2465 NC_002927.3 2620063 2621034 R LysR family transcriptional regulator complement(2620063..2621034) Bordetella bronchiseptica RB50 2662103 NP_889006.1 CDS BB2466 NC_002927.3 2621101 2622687 D sulfatase 2621101..2622687 Bordetella bronchiseptica RB50 2661556 NP_889007.1 CDS BB2467 NC_002927.3 2622729 2623706 D hypothetical protein 2622729..2623706 Bordetella bronchiseptica RB50 2661444 NP_889008.1 CDS BB2468 NC_002927.3 2623727 2624239 R hypothetical protein complement(2623727..2624239) Bordetella bronchiseptica RB50 2659251 NP_889009.1 CDS BB2469 NC_002927.3 2624738 2626243 D hypothetical protein 2624738..2626243 Bordetella bronchiseptica RB50 2661824 NP_889010.1 CDS BB2470 NC_002927.3 2626341 2626805 R hypothetical protein complement(2626341..2626805) Bordetella bronchiseptica RB50 2660553 NP_889011.1 CDS stbB NC_002927.3 2626915 2627340 R plasmid stability protein complement(2626915..2627340) Bordetella bronchiseptica RB50 2660554 NP_889012.1 CDS stbC NC_002927.3 2627337 2627576 R plasmid stability protein complement(2627337..2627576) Bordetella bronchiseptica RB50 2659602 NP_889013.1 CDS BB2473 NC_002927.3 2627650 2628492 R AraC family transcriptional regulator complement(2627650..2628492) Bordetella bronchiseptica RB50 2659603 NP_889014.1 CDS mip NC_002927.3 2628630 2629175 D hypothetical protein 2628630..2629175 Bordetella bronchiseptica RB50 2660594 NP_889015.1 CDS BB2475 NC_002927.3 2629234 2629746 D hypothetical protein 2629234..2629746 Bordetella bronchiseptica RB50 2659140 NP_889016.1 CDS BB2476 NC_002927.3 2629773 2630060 D hypothetical protein 2629773..2630060 Bordetella bronchiseptica RB50 2659141 NP_889017.1 CDS BB2477 NC_002927.3 2630057 2630617 D hypothetical protein 2630057..2630617 Bordetella bronchiseptica RB50 2659516 NP_889018.1 CDS BB2478 NC_002927.3 2630695 2631741 D hypothetical protein 2630695..2631741 Bordetella bronchiseptica RB50 2659517 NP_889019.1 CDS linM18 NC_002927.3 2631738 2632541 D bacteriocin 2631738..2632541 Bordetella bronchiseptica RB50 2661469 NP_889020.1 CDS BB2480 NC_002927.3 2632596 2633894 R hypothetical protein complement(2632596..2633894) Bordetella bronchiseptica RB50 2661470 NP_889021.1 CDS BB2481 NC_002927.3 2633898 2634419 R hypothetical protein complement(2633898..2634419) Bordetella bronchiseptica RB50 2660637 NP_889022.1 CDS BB2482 NC_002927.3 2634461 2635468 R C4-dicarboxylate ABC transporter substrate-binding protein complement(2634461..2635468) Bordetella bronchiseptica RB50 2660638 NP_889023.1 CDS BB2483 NC_002927.3 2635493 2636119 R isochorismatase complement(2635493..2636119) Bordetella bronchiseptica RB50 2660661 NP_889024.1 CDS BB2484 NC_002927.3 2636694 2637515 R ortholog of Bordetella pertussis (BX470248) BP2117; transcriptional regulator complement(2636694..2637515) Bordetella bronchiseptica RB50 2660387 NP_889025.1 CDS BB2485 NC_002927.3 2637554 2638525 D ortholog of Bordetella pertussis (BX470248) BP2116; hypothetical protein 2637554..2638525 Bordetella bronchiseptica RB50 2659953 NP_889026.1 CDS BB2486 NC_002927.3 2638529 2639383 D ortholog of Bordetella pertussis (BX470248) BP2115; hypothetical protein 2638529..2639383 Bordetella bronchiseptica RB50 2661314 NP_889027.1 CDS BB2487 NC_002927.3 2639402 2640220 D ortholog of Bordetella pertussis (BX470248) BP2114; hydrolase 2639402..2640220 Bordetella bronchiseptica RB50 2661315 NP_889028.1 CDS BB2488 NC_002927.3 2640240 2641700 D ortholog of Bordetella pertussis (BX470248) BP2113; amidase 2640240..2641700 Bordetella bronchiseptica RB50 2659494 NP_889029.1 CDS BB2489 NC_002927.3 2641703 2642491 D ortholog of Bordetella pertussis (BX470248) BP2112; oxidoreductase 2641703..2642491 Bordetella bronchiseptica RB50 2660412 NP_889030.1 CDS BB2490 NC_002927.3 2642893 2644887 D Similar to Lactococcus lactis abortive infection phage resistance protein abiu SWALL:Q9F9J7 (EMBL:AF188839) (589 aa) fasta scores: E(): 2.3e-36, 30.17% id in 570 aa; abortive infection phage resistance protein 2642893..2644887 Bordetella bronchiseptica RB50 2660582 NP_889031.1 CDS BB2492 NC_002927.3 2646061 2646321 R Similar to Caulobacter crescentus insertion sequence IS511 orfa and orfb genes, complete cds cc2741 and cc0514 and cc2291 and cc2689 SWALL:Q45992 (EMBL:U39501) (88 aa) fasta scores: E(): 8.2e-19, 67.81% id in 87 aa, and to Agrobacterium tumefaciens IS3 family transposase orfa or atu4605 or agr_l_545 SWALL:Q8U750 (EMBL:AE009388) (88 aa) fasta scores: E(): 2.9e-21, 75.29% id in 85 aa; transposase complement(2646061..2646321) Bordetella bronchiseptica RB50 2659895 NP_889032.1 CDS BB2493 NC_002927.3 2646550 2647761 R Similar to Streptomyces coelicolor DNA-binding protein sco3537 or sce2.18C SWALL:Q9X8B2 (EMBL:AL049645) (390 aa) fasta scores: E(): 1.3e-17, 29.85% id in 345 aa, and to Neisseria meningitidis transcriptional regulator, hth_3 family nmb2012 SWALL:Q9JXJ6 (EMBL:AE002551) (363 aa) fasta scores: E(): 6.9e-18, 27.83% id in 370 aa; phage-related DNA-binding protein complement(2646550..2647761) Bordetella bronchiseptica RB50 2658956 NP_889033.1 CDS BB2494 NC_002927.3 2647758 2648414 R no significant database matches; phage-like hypothetical protein complement(2647758..2648414) Bordetella bronchiseptica RB50 2663909 NP_889034.1 CDS BB2495 NC_002927.3 2649010 2650515 R ortholog of Bordetella pertussis (BX470248) BP2111; hypothetical protein complement(2649010..2650515) Bordetella bronchiseptica RB50 2660103 NP_889035.1 CDS BB2496 NC_002927.3 2650557 2651339 R ortholog of Bordetella pertussis (BX470248) BP2110; exodeoxyribonuclease III complement(2650557..2651339) Bordetella bronchiseptica RB50 2660104 NP_889036.1 CDS BB2497 NC_002927.3 2651409 2651855 R ortholog of Bordetella pertussis (BX470248) BP2109; hypothetical protein complement(2651409..2651855) Bordetella bronchiseptica RB50 2661146 NP_889037.1 CDS BB2498 NC_002927.3 2651852 2653078 R ortholog of Bordetella pertussis (BX470248) BP2108; hypothetical protein complement(2651852..2653078) Bordetella bronchiseptica RB50 2659063 NP_889038.1 CDS BB2499 NC_002927.3 2653071 2653475 R ortholog of Bordetella pertussis (BX470248) BP2107; hypothetical protein complement(2653071..2653475) Bordetella bronchiseptica RB50 2659130 NP_889039.1 CDS BB2500 NC_002927.3 2653635 2653937 D ortholog of Bordetella pertussis (BX470248) BP2106; hypothetical protein 2653635..2653937 Bordetella bronchiseptica RB50 2659131 NP_889040.1 CDS BB2501 NC_002927.3 2653934 2654704 R ortholog of Bordetella pertussis (BX470248) BP1362; amino-acid ABC transporter ATP-binding protein complement(2653934..2654704) Bordetella bronchiseptica RB50 2662121 NP_889041.1 CDS BB2502 NC_002927.3 2654701 2655381 R ortholog of Bordetella pertussis (BX470248) BP1363; amino-acid ABC transporter permease complement(2654701..2655381) Bordetella bronchiseptica RB50 2661986 NP_889042.1 CDS BB2503 NC_002927.3 2655448 2656236 R ortholog of Bordetella pertussis (BX470248) BP1364; amino acid ABC transporter substrate-binding protein complement(2655448..2656236) Bordetella bronchiseptica RB50 2661977 NP_889043.1 CDS BB2504 NC_002927.3 2656511 2658847 R ortholog of Bordetella pertussis (BX470248) BP2722; membrane transport ATPase complement(2656511..2658847) Bordetella bronchiseptica RB50 2662022 NP_889044.1 CDS BB2505 NC_002927.3 2658930 2659364 D ortholog of Bordetella pertussis (BX470248) BP2723; MerR family transcriptional regulator 2658930..2659364 Bordetella bronchiseptica RB50 2662584 NP_889045.1 CDS BB2506 NC_002927.3 2659467 2660051 D ortholog of Bordetella pertussis (BX470248) BP2703; hypothetical protein 2659467..2660051 Bordetella bronchiseptica RB50 2662630 NP_889046.1 CDS argH NC_002927.3 2660121 2661542 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(2660121..2661542) Bordetella bronchiseptica RB50 2663883 NP_889047.1 CDS BB2508 NC_002927.3 2661650 2662996 D ortholog of Bordetella pertussis (BX470248) BP2701; membrane transport protein 2661650..2662996 Bordetella bronchiseptica RB50 2661210 NP_889048.1 CDS nadE NC_002927.3 2663035 2664669 D NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2663035..2664669 Bordetella bronchiseptica RB50 2659404 NP_889049.1 CDS glnB NC_002927.3 2664713 2665051 D ortholog of Bordetella pertussis (BX470248) BP2699; nitrogen regulatory protein 2664713..2665051 Bordetella bronchiseptica RB50 2659554 NP_889050.1 CDS BB2511 NC_002927.3 2665076 2665450 R ortholog of Bordetella pertussis (BX470248) BP2698; endonuclease complement(2665076..2665450) Bordetella bronchiseptica RB50 2660482 NP_889051.1 CDS BB2512 NC_002927.3 2665536 2665916 D ortholog of Bordetella pertussis (BX470248) BP2697; heat shock protein 2665536..2665916 Bordetella bronchiseptica RB50 2660102 NP_889052.1 CDS BB2513 NC_002927.3 2666033 2667970 D ortholog of Bordetella pertussis (BX470248) BP2696; phosphatase 2666033..2667970 Bordetella bronchiseptica RB50 2659019 NP_889053.1 CDS BB2514 NC_002927.3 2668120 2668665 R ortholog of Bordetella pertussis (BX470248) BP2695; hypothetical protein complement(2668120..2668665) Bordetella bronchiseptica RB50 2659020 NP_889054.1 CDS BB2515 NC_002927.3 2668738 2669619 R ortholog of Bordetella pertussis (BX470248) BP2694; LysR family transcriptional regulator complement(2668738..2669619) Bordetella bronchiseptica RB50 2662077 NP_889055.1 CDS BB2516 NC_002927.3 2669727 2671355 D ortholog of Bordetella pertussis (BX470248) BP2693; gamma-glutamyltranspeptidase 2669727..2671355 Bordetella bronchiseptica RB50 2660679 NP_889056.1 CDS BB2517 NC_002927.3 2671397 2672914 D ortholog of Bordetella pertussis (BX470248) BP2692; ABC transporter substrate-binding protein 2671397..2672914 Bordetella bronchiseptica RB50 2661209 NP_889057.1 CDS BB2518 NC_002927.3 2673009 2673953 D ortholog of Bordetella pertussis (BX470248) BP2691; peptide ABC transporter permease 2673009..2673953 Bordetella bronchiseptica RB50 2660012 NP_889058.1 CDS BB2519 NC_002927.3 2673950 2674825 D ortholog of Bordetella pertussis (BX470248) BP2690; ABC transporter inner membrane protein 2673950..2674825 Bordetella bronchiseptica RB50 2660689 NP_889059.1 CDS BB2520 NC_002927.3 2674828 2676687 D ABC transporter ATP-binding protein 2674828..2676687 Bordetella bronchiseptica RB50 2660632 NP_889060.1 CDS BB2521 NC_002927.3 2676690 2677334 R LysE family efflux protein complement(2676690..2677334) Bordetella bronchiseptica RB50 2659159 NP_889061.1 CDS BB2522 NC_002927.3 2677426 2677962 D hypothetical protein 2677426..2677962 Bordetella bronchiseptica RB50 2662018 NP_889062.1 CDS BB2523 NC_002927.3 2678096 2679286 R ortholog of Bordetella pertussis (BX470248) BP0980; hypothetical protein complement(2678096..2679286) Bordetella bronchiseptica RB50 2662019 NP_889063.1 CDS BB2524 NC_002927.3 2679353 2679925 R ortholog of Bordetella pertussis (BX470248) BP0981; hypothetical protein complement(2679353..2679925) Bordetella bronchiseptica RB50 2659213 NP_889064.1 CDS BB2525 NC_002927.3 2679985 2680716 D ortholog of Bordetella pertussis (BX470248) BP0982; RNA pseudouridylate synthase 2679985..2680716 Bordetella bronchiseptica RB50 2659107 NP_889065.1 CDS BB2526 NC_002927.3 2680768 2681685 R ortholog of Bordetella pertussis (BX470248) BP0983; LysR family transcriptional regulator complement(2680768..2681685) Bordetella bronchiseptica RB50 2659240 NP_889066.1 CDS acrA NC_002927.3 2681936 2683126 D ortholog of Bordetella pertussis (BX470248) BP0984; acriflavine resistance protein a precursor 2681936..2683126 Bordetella bronchiseptica RB50 2662081 NP_889067.1 CDS acrB NC_002927.3 2683139 2686318 D ortholog of Bordetella pertussis (BX470248) BP0985; acriflavine resistance protein B 2683139..2686318 Bordetella bronchiseptica RB50 2662148 NP_889068.1 CDS cusC NC_002927.3 2686315 2687781 D ortholog of Bordetella pertussis (BX470248) BP0986; outer membrane lipoprotein 2686315..2687781 Bordetella bronchiseptica RB50 2659744 NP_889069.1 CDS BB2530 NC_002927.3 2687851 2688102 R ortholog of Bordetella pertussis (BX470248) BP0987; hypothetical protein complement(2687851..2688102) Bordetella bronchiseptica RB50 2659755 NP_889070.1 CDS BB2531 NC_002927.3 2688248 2688898 R ortholog of Bordetella pertussis (BX470248) BP0988; hypothetical protein complement(2688248..2688898) Bordetella bronchiseptica RB50 2660113 NP_889071.1 CDS prlC NC_002927.3 2689054 2691168 R ortholog of Bordetella pertussis (BX470248) BP0989; oligopeptidase A complement(2689054..2691168) Bordetella bronchiseptica RB50 2659907 NP_889072.1 CDS folD NC_002927.3 2691244 2692095 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(2691244..2692095) Bordetella bronchiseptica RB50 2659442 NP_889073.1 CDS BB2534 NC_002927.3 2692092 2692718 R ortholog of Bordetella pertussis (BX470248) BP0991; two-component response regulator complement(2692092..2692718) Bordetella bronchiseptica RB50 2661512 NP_889074.1 CDS BB2535 NC_002927.3 2692715 2694469 R ortholog of Bordetella pertussis (BX470248) BP0992; tw-component sensor kinase complement(2692715..2694469) Bordetella bronchiseptica RB50 2661519 NP_889075.1 CDS aceE NC_002927.3 2694762 2697467 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 2694762..2697467 Bordetella bronchiseptica RB50 2659917 NP_889076.1 CDS aceF NC_002927.3 2697480 2699135 D Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; dihydrolipoamide acetyltransferase 2697480..2699135 Bordetella bronchiseptica RB50 2659918 NP_889077.1 CDS lpdA NC_002927.3 2699148 2700923 D ortholog of Bordetella pertussis (BX470248) BP0995; dihydrolipoamide dehydrogenase 2699148..2700923 Bordetella bronchiseptica RB50 2660663 NP_889078.1 CDS flaA NC_002927.3 2701146 2702321 R structural flagella protein; flagellin complement(2701146..2702321) Bordetella bronchiseptica RB50 2660033 NP_889079.1 CDS fliA NC_002927.3 2702708 2703445 R ortholog of Bordetella pertussis (BX470248) BP1021; RNA polymerase sigma factor for flagellar operon complement(2702708..2703445) Bordetella bronchiseptica RB50 2662241 NP_889080.1 CDS flhD NC_002927.3 2703881 2704204 D with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 2703881..2704204 Bordetella bronchiseptica RB50 2660623 NP_889081.1 CDS flhC NC_002927.3 2704239 2704799 D With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 2704239..2704799 Bordetella bronchiseptica RB50 2660624 NP_889082.1 CDS motA NC_002927.3 2704920 2705795 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 2704920..2705795 Bordetella bronchiseptica RB50 2660625 NP_889083.1 CDS motB NC_002927.3 2705808 2706755 D with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 2705808..2706755 Bordetella bronchiseptica RB50 2660620 NP_889084.1 CDS cheY NC_002927.3 2706770 2707150 D ortholog of Bordetella pertussis (BX470248) BP1026; chemotaxis protein CheY 2706770..2707150 Bordetella bronchiseptica RB50 2661001 NP_889085.1 CDS cheA NC_002927.3 2707177 2709240 D ortholog of Bordetella pertussis (BX470248) BP1028; chemotaxis protein CheA 2707177..2709240 Bordetella bronchiseptica RB50 2660464 NP_889086.1 CDS cheW NC_002927.3 2709255 2709755 D ortholog of Bordetella pertussis (BX470248) BP1029; chemotaxis protein CheW 2709255..2709755 Bordetella bronchiseptica RB50 2661017 NP_889087.1 CDS tsr NC_002927.3 2709829 2711535 D ortholog of Bordetella pertussis (BX470248) BP1030; methyl-accepting chemotaxis protein I 2709829..2711535 Bordetella bronchiseptica RB50 2661023 NP_889088.1 CDS cheR NC_002927.3 2711544 2712404 D ortholog of Bordetella pertussis (BX470248) BP1031; chemotaxis protein methyltransferase 2711544..2712404 Bordetella bronchiseptica RB50 2661038 NP_889089.1 CDS cheB NC_002927.3 2712401 2713453 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 2712401..2713453 Bordetella bronchiseptica RB50 2660852 NP_889090.1 CDS cheY NC_002927.3 2713506 2713895 D ortholog of Bordetella pertussis (BX470248) BP1033; chemotaxis protein CheY 2713506..2713895 Bordetella bronchiseptica RB50 2659526 NP_889091.1 CDS cheZ NC_002927.3 2713904 2714536 D cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 2713904..2714536 Bordetella bronchiseptica RB50 2659527 NP_889092.1 CDS flhB NC_002927.3 2714764 2715918 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 2714764..2715918 Bordetella bronchiseptica RB50 2660354 NP_889093.1 CDS flhA NC_002927.3 2715922 2718039 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 2715922..2718039 Bordetella bronchiseptica RB50 2660978 NP_889094.1 CDS flhF NC_002927.3 2718036 2720408 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 2718036..2720408 Bordetella bronchiseptica RB50 2661558 NP_889095.1 CDS BB2556 NC_002927.3 2720426 2720908 R ortholog of Bordetella pertussis (BX470248) BP1370; hypothetical protein complement(2720426..2720908) Bordetella bronchiseptica RB50 2661475 NP_889096.1 CDS flgM NC_002927.3 2720925 2721215 R ortholog of Bordetella pertussis (BX470248) BP1371; negative regulator of flagellin synthesis complement(2720925..2721215) Bordetella bronchiseptica RB50 2661476 NP_889097.1 CDS flgA NC_002927.3 2721342 2722052 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(2721342..2722052) Bordetella bronchiseptica RB50 2661477 NP_889098.1 CDS flgB NC_002927.3 2722236 2722643 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 2722236..2722643 Bordetella bronchiseptica RB50 2659455 NP_889099.1 CDS flgC NC_002927.3 2722656 2723075 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 2722656..2723075 Bordetella bronchiseptica RB50 2659544 NP_889100.1 CDS flgD NC_002927.3 2723123 2723827 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 2723123..2723827 Bordetella bronchiseptica RB50 2659946 NP_889101.1 CDS flgE NC_002927.3 2723894 2725315 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 2723894..2725315 Bordetella bronchiseptica RB50 2659947 NP_889102.1 CDS flgF NC_002927.3 2725354 2726118 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 2725354..2726118 Bordetella bronchiseptica RB50 2659896 NP_889103.1 CDS flgG NC_002927.3 2726162 2726947 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 2726162..2726947 Bordetella bronchiseptica RB50 2661208 NP_889104.1 CDS flgH NC_002927.3 2726944 2727636 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 2726944..2727636 Bordetella bronchiseptica RB50 2659762 NP_889105.1 CDS flgI NC_002927.3 2727639 2728772 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 2727639..2728772 Bordetella bronchiseptica RB50 2660829 NP_889106.1 CDS flgJ NC_002927.3 2728790 2729809 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 2728790..2729809 Bordetella bronchiseptica RB50 2660830 NP_889107.1 CDS flgK NC_002927.3 2729879 2731525 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 2729879..2731525 Bordetella bronchiseptica RB50 2661941 NP_889108.1 CDS flgL NC_002927.3 2731559 2733091 D With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 2731559..2733091 Bordetella bronchiseptica RB50 2661196 NP_889109.1 CDS tsr NC_002927.3 2733170 2735002 D ortholog of Bordetella pertussis (BX470248) BP1384; methyl-accepting chemotaxis protein I 2733170..2735002 Bordetella bronchiseptica RB50 2661197 NP_889110.1 CDS BB2573 NC_002927.3 2736988 2737431 D no significant database matches; lipoprotein 2736988..2737431 Bordetella bronchiseptica RB50 2660767 NP_889111.1 CDS tar NC_002927.3 2737658 2739268 D Similar to Salmonella typhimurium methyl-accepting chemotaxis protein ii tar or chem or stm1919 SWALL:MCP2_SALTY (SWALL:P02941) (553 aa) fasta scores: E(): 1.8e-65, 47.92% id in 530 aa, and to Escherichia coli methyl-accepting chemotaxis protein ii tar or chem or b1886 SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 1.1e-63, 47.81% id in 525 aa; methyl-accepting chemotaxis protein 2737658..2739268 Bordetella bronchiseptica RB50 2662665 NP_889112.1 CDS BB2575 NC_002927.3 2739447 2741045 D ortholog of Bordetella pertussis (BX470248) BP1386; methyl-accepting chemotaxis protein 2739447..2741045 Bordetella bronchiseptica RB50 2662181 NP_889113.1 CDS fliR NC_002927.3 2741150 2741938 R ortholog of Bordetella pertussis (BX470248) BP1389; flagellar biosynthetic protein complement(2741150..2741938) Bordetella bronchiseptica RB50 2661958 NP_889114.1 CDS fliQ NC_002927.3 2741961 2742230 R ortholog of Bordetella pertussis (BX470248) BP1390; flagellar biosynthetic protein FliQ complement(2741961..2742230) Bordetella bronchiseptica RB50 2661033 NP_889115.1 CDS fliP NC_002927.3 2742247 2743038 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(2742247..2743038) Bordetella bronchiseptica RB50 2663954 NP_889116.1 CDS fliO NC_002927.3 2743050 2743391 R ortholog of Bordetella pertussis (BX470248) BP1392; flagellar protein FliO complement(2743050..2743391) Bordetella bronchiseptica RB50 2660927 NP_889117.1 CDS fliN NC_002927.3 2743402 2743920 R ortholog of Bordetella pertussis (BX470248) BP1393; flagellar motor switch protein complement(2743402..2743920) Bordetella bronchiseptica RB50 2660490 NP_889118.1 CDS fliM NC_002927.3 2743913 2744923 R ortholog of Bordetella pertussis (BX470248) BP1394; flagellar motor switch protein FliM complement(2743913..2744923) Bordetella bronchiseptica RB50 2661030 NP_889119.1 CDS fliL NC_002927.3 2744926 2745498 R ortholog of Bordetella pertussis (BX470248) BP1395; flagellar protein FliL complement(2744926..2745498) Bordetella bronchiseptica RB50 2660991 NP_889120.1 CDS fliK NC_002927.3 2745640 2746983 R ortholog of Bordetella pertussis (BX470248) BP1398; flagellar hook-length control protein complement(2745640..2746983) Bordetella bronchiseptica RB50 2660992 NP_889121.1 CDS fliJ NC_002927.3 2746989 2747435 R ortholog of Bordetella pertussis (BX470248) BP1399; flagellar protein FliJ complement(2746989..2747435) Bordetella bronchiseptica RB50 2659966 NP_889122.1 CDS fliI NC_002927.3 2747428 2748903 R ortholog of Bordetella pertussis (BX470248) BP1400; flagellum-specific ATP synthase FliI complement(2747428..2748903) Bordetella bronchiseptica RB50 2659428 NP_889123.1 CDS fliH NC_002927.3 2748900 2749655 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(2748900..2749655) Bordetella bronchiseptica RB50 2660850 NP_889124.1 CDS fliG NC_002927.3 2749648 2750658 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(2749648..2750658) Bordetella bronchiseptica RB50 2662041 NP_889125.1 CDS fliF NC_002927.3 2750648 2752324 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(2750648..2752324) Bordetella bronchiseptica RB50 2662174 NP_889126.1 CDS fliE NC_002927.3 2752637 2752969 D ortholog of Bordetella pertussis (BX470248) BP1404; flagellar hook-basal body complex protein FliE 2752637..2752969 Bordetella bronchiseptica RB50 2659384 NP_889127.1 CDS BB2590 NC_002927.3 2752983 2753378 R ortholog of Bordetella pertussis (BX470248) BP1405; hypothetical protein complement(2752983..2753378) Bordetella bronchiseptica RB50 2659385 NP_889128.1 CDS BB2591 NC_002927.3 2753388 2753702 R ortholog of Bordetella pertussis (BX470248) BP1406; flagellar protein complement(2753388..2753702) Bordetella bronchiseptica RB50 2661181 NP_889129.1 CDS BB2592 NC_002927.3 2753699 2754970 R ortholog of Bordetella pertussis (BX470248) BP1407; hypothetical protein complement(2753699..2754970) Bordetella bronchiseptica RB50 2661182 NP_889130.1 CDS fliT NC_002927.3 2754967 2755347 R ortholog of Bordetella pertussis (BX470248) BP1408; flagellar protein FliT complement(2754967..2755347) Bordetella bronchiseptica RB50 2661183 NP_889131.1 CDS fliS NC_002927.3 2755365 2755793 R ortholog of Bordetella pertussis (BX470248) BP1409; flagellar protein FliS complement(2755365..2755793) Bordetella bronchiseptica RB50 2659344 NP_889132.1 CDS fliD NC_002927.3 2755801 2757174 R ortholog of Bordetella pertussis (BX470248) BP1410; flagellar hook-associated protein 2 complement(2755801..2757174) Bordetella bronchiseptica RB50 2659345 NP_889133.1 CDS flaG NC_002927.3 2757315 2757692 R ortholog of Bordetella pertussis (BX470248) BP1411; Similar to Pseudomonas aeruginosa FlaG SWALL:O33420 (EMBL:L81176) (128 aa) fasta scores: E(): 0.035, 31.35% id in 118 aa, and to Aeromonas salmonicida FlaGellin protein flaG SWALL:O30378 (EMBL:AF002709) (146 aa) fasta scores: E(): 1.9, 35.48% id in 62 aa; flagellar protein complement(2757315..2757692) Bordetella bronchiseptica RB50 2658983 NP_889134.1 CDS folC NC_002927.3 2758182 2759489 D ortholog of Bordetella pertussis (BX470248) BP1412; bifunctional folylpolyglutamate synthase/dihydrofolate synthase FolC 2758182..2759489 Bordetella bronchiseptica RB50 2658984 NP_889135.1 CDS BB2598 NC_002927.3 2759550 2760380 D ortholog of Bordetella pertussis (BX470248) BP1413; hypothetical protein 2759550..2760380 Bordetella bronchiseptica RB50 2662648 NP_889136.1 CDS cvpA NC_002927.3 2760377 2760865 D ortholog of Bordetella pertussis (BX470248) BP1414; colicin V production protein 2760377..2760865 Bordetella bronchiseptica RB50 2662649 NP_889137.1 CDS purF NC_002927.3 2760907 2762427 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2760907..2762427 Bordetella bronchiseptica RB50 2662660 NP_889138.1 CDS dsbB NC_002927.3 2762471 2762947 R ortholog of Bordetella pertussis (BX470248) BP1416; disulfide bond formation protein B complement(2762471..2762947) Bordetella bronchiseptica RB50 2662653 NP_889139.1 CDS marC NC_002927.3 2762998 2763711 R ortholog of Bordetella pertussis (BX470248) BP1416A; multiple antibiotic resistance protein complement(2762998..2763711) Bordetella bronchiseptica RB50 2662668 NP_889140.1 CDS glnD NC_002927.3 2763750 2766347 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(2763750..2766347) Bordetella bronchiseptica RB50 2662666 NP_889141.1 CDS map NC_002927.3 2766377 2767198 R ortholog of Bordetella pertussis (BX470248) BP1418; methionine aminopeptidase complement(2766377..2767198) Bordetella bronchiseptica RB50 2662681 NP_889142.1 CDS rpsB NC_002927.3 2767925 2768674 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 2767925..2768674 Bordetella bronchiseptica RB50 2662682 NP_889143.2 CDS tsf NC_002927.3 2768858 2769736 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 2768858..2769736 Bordetella bronchiseptica RB50 2662629 NP_889144.2 CDS pyrH NC_002927.3 2769834 2770550 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2769834..2770550 Bordetella bronchiseptica RB50 2661830 NP_889145.1 CDS frr NC_002927.3 2770565 2771125 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2770565..2771125 Bordetella bronchiseptica RB50 2660989 NP_889146.1 CDS uppS NC_002927.3 2771163 2772056 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 2771163..2772056 Bordetella bronchiseptica RB50 2660349 NP_889147.1 CDS cdsA NC_002927.3 2772076 2772933 D ortholog of Bordetella pertussis (BX470248) BP1424; phosphatidate cytidylyltransferase 2772076..2772933 Bordetella bronchiseptica RB50 2660350 NP_889148.1 CDS dxr NC_002927.3 2772930 2774129 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2772930..2774129 Bordetella bronchiseptica RB50 2659809 NP_889149.1 CDS BB2612 NC_002927.3 2774169 2775503 D ortholog of Bordetella pertussis (BX470248) BP1426; hypothetical protein 2774169..2775503 Bordetella bronchiseptica RB50 2659434 NP_889150.1 CDS BB2613 NC_002927.3 2775556 2777892 D ortholog of Bordetella pertussis (BX470248) BP1427; surface antigen 2775556..2777892 Bordetella bronchiseptica RB50 2660609 NP_889151.1 CDS BB2614 NC_002927.3 2778018 2778581 D ortholog of Bordetella pertussis (BX470248) BP1428; outer membrane protein 2778018..2778581 Bordetella bronchiseptica RB50 2660662 NP_889152.1 CDS lpxD NC_002927.3 2778590 2779681 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2778590..2779681 Bordetella bronchiseptica RB50 2661817 NP_889153.1 CDS fabZ NC_002927.3 2779753 2780208 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 2779753..2780208 Bordetella bronchiseptica RB50 2659000 NP_889154.1 CDS lpxA NC_002927.3 2780209 2781003 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 2780209..2781003 Bordetella bronchiseptica RB50 2659254 NP_889155.1 CDS lpxB NC_002927.3 2781000 2782181 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 2781000..2782181 Bordetella bronchiseptica RB50 2661937 NP_889156.1 CDS rnhB NC_002927.3 2782168 2782773 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 2782168..2782773 Bordetella bronchiseptica RB50 2661938 NP_889157.1 CDS BB2620 NC_002927.3 2782770 2783543 D ortholog of Bordetella pertussis (BX470248) BP1434; RNA methyltransferase 2782770..2783543 Bordetella bronchiseptica RB50 2659147 NP_889158.1 CDS BB2621 NC_002927.3 2783555 2784382 R ortholog of Bordetella pertussis (BX470248) BP1435; hypothetical protein complement(2783555..2784382) Bordetella bronchiseptica RB50 2662658 NP_889159.1 CDS ppsA NC_002927.3 2784543 2786906 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2784543..2786906 Bordetella bronchiseptica RB50 2662661 NP_889160.1 CDS BB2623 NC_002927.3 2786974 2787693 R Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase complement(2786974..2787693) Bordetella bronchiseptica RB50 2660345 NP_889161.1 CDS BB2624 NC_002927.3 2787817 2788242 D ortholog of Bordetella pertussis (BX470248) BP1438; hypothetical protein 2787817..2788242 Bordetella bronchiseptica RB50 2659473 NP_889162.1 CDS BB2625 NC_002927.3 2788296 2789222 D ortholog of Bordetella pertussis (BX470248) BP1440; hypothetical protein 2788296..2789222 Bordetella bronchiseptica RB50 2659474 NP_889163.1 CDS BB2626 NC_002927.3 2789288 2790445 D ortholog of Bordetella pertussis (BX470248) BP1441; hypothetical protein 2789288..2790445 Bordetella bronchiseptica RB50 2659180 NP_889164.1 CDS smpB NC_002927.3 2790426 2790893 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(2790426..2790893) Bordetella bronchiseptica RB50 2660294 NP_889165.1 CDS BB2628 NC_002927.3 2790959 2791393 D ortholog of Bordetella pertussis (BX470248) BP1443; hypothetical protein 2790959..2791393 Bordetella bronchiseptica RB50 2661623 NP_889166.1 CDS BB2629 NC_002927.3 2791383 2791733 D ortholog of Bordetella pertussis (BX470248) BP1444; hypothetical protein 2791383..2791733 Bordetella bronchiseptica RB50 2662032 NP_889167.1 CDS BB2630 NC_002927.3 2791930 2793084 D ortholog of Bordetella pertussis (BX470248) BP1445; acyl-CoA dehydrogenase 2791930..2793084 Bordetella bronchiseptica RB50 2659346 NP_889168.1 CDS BB2631 NC_002927.3 2793081 2794253 D ortholog of Bordetella pertussis (BX470248) BP1446; enoly-CoA hydratase 2793081..2794253 Bordetella bronchiseptica RB50 2662084 NP_889169.1 CDS mmsB NC_002927.3 2794301 2795194 D ortholog of Bordetella pertussis (BX470248) BP1447; 3-hydroxyisobutyrate dehydrogenase 2794301..2795194 Bordetella bronchiseptica RB50 2662085 NP_889170.1 CDS BB2633 NC_002927.3 2795240 2795677 D ortholog of Bordetella pertussis (BX470248) BP1448; hypothetical protein 2795240..2795677 Bordetella bronchiseptica RB50 2662194 NP_889171.1 CDS BB2634 NC_002927.3 2795737 2796426 D ortholog of Bordetella pertussis (BX470248) BP1449; hypothetical protein 2795737..2796426 Bordetella bronchiseptica RB50 2660346 NP_889172.1 CDS BB2635 NC_002927.3 2796436 2797452 R ortholog of Bordetella pertussis (BX470248) BP1845; hypothetical protein complement(2796436..2797452) Bordetella bronchiseptica RB50 2660347 NP_889173.1 CDS BB2636 NC_002927.3 2797619 2798665 D ortholog of Bordetella pertussis (BX470248) BP1846; hypothetical protein 2797619..2798665 Bordetella bronchiseptica RB50 2662044 NP_889174.1 CDS tmk NC_002927.3 2798662 2799288 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 2798662..2799288 Bordetella bronchiseptica RB50 2662127 NP_889175.1 CDS holB NC_002927.3 2799285 2800337 D ortholog of Bordetella pertussis (BX470248) BP1848; DNA polymerase III subunit delta' 2799285..2800337 Bordetella bronchiseptica RB50 2660160 NP_889176.1 CDS BB2639 NC_002927.3 2800378 2801157 D ortholog of Bordetella pertussis (BX470248) BP1849; hypothetical protein 2800378..2801157 Bordetella bronchiseptica RB50 2659348 NP_889177.1 CDS BB2640 NC_002927.3 2801208 2802044 D ortholog of Bordetella pertussis (BX470248) BP1850; hypothetical protein 2801208..2802044 Bordetella bronchiseptica RB50 2659320 NP_889178.1 CDS BB2641 NC_002927.3 2802361 2803098 D ortholog of Bordetella pertussis (BX470248) BP1851; transcriptional regulator 2802361..2803098 Bordetella bronchiseptica RB50 2659347 NP_889179.1 CDS BB2642 NC_002927.3 2803173 2803916 D ortholog of Bordetella pertussis (BX470248) BP1852; glutamine ABC transporter substrate-binding protein 2803173..2803916 Bordetella bronchiseptica RB50 2660080 NP_889180.1 CDS BB2643 NC_002927.3 2803913 2804581 D ortholog of Bordetella pertussis (BX470248) BP1853; glutamine transport system permease 2803913..2804581 Bordetella bronchiseptica RB50 2660092 NP_889181.1 CDS glnQ NC_002927.3 2804578 2805351 D ortholog of Bordetella pertussis (BX470248) BP1855; glutamine transport ATP-binding protein 2804578..2805351 Bordetella bronchiseptica RB50 2659256 NP_889182.1 CDS BB2645 NC_002927.3 2805348 2806301 D catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 2805348..2806301 Bordetella bronchiseptica RB50 2659334 NP_889183.1 CDS gdhA NC_002927.3 2806494 2807783 D ortholog of Bordetella pertussis (BX470248) BP1857; glutamate dehydrogenase 2806494..2807783 Bordetella bronchiseptica RB50 2659702 NP_889184.1 CDS aldH NC_002927.3 2807859 2809355 R ortholog of Bordetella pertussis (BX470248) BP1858; aldehyde dehydrogenase complement(2807859..2809355) Bordetella bronchiseptica RB50 2660241 NP_889185.1 CDS amaB NC_002927.3 2809405 2810652 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(2809405..2810652) Bordetella bronchiseptica RB50 2660154 NP_889186.1 CDS ilvG NC_002927.3 2810662 2812371 R catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; thiamine pyrophosphate protein complement(2810662..2812371) Bordetella bronchiseptica RB50 2660163 NP_889187.1 CDS citE NC_002927.3 2812368 2813306 R ortholog of Bordetella pertussis (BX470248) BP1861; citrate lyase subunit beta complement(2812368..2813306) Bordetella bronchiseptica RB50 2661719 NP_889188.1 CDS BB2651 NC_002927.3 2813303 2814586 R ortholog of Bordetella pertussis (BX470248) BP1862; hypothetical protein complement(2813303..2814586) Bordetella bronchiseptica RB50 2661720 NP_889189.1 CDS BB2652 NC_002927.3 2814590 2815072 R ortholog of Bordetella pertussis (BX470248) BP1863; hypothetical protein complement(2814590..2815072) Bordetella bronchiseptica RB50 2659406 NP_889190.1 CDS BB2653 NC_002927.3 2815073 2816068 R ortholog of Bordetella pertussis (BX470248) BP1864; hypothetical protein complement(2815073..2816068) Bordetella bronchiseptica RB50 2661624 NP_889191.1 CDS BB2654 NC_002927.3 2816232 2816951 R ortholog of Bordetella pertussis (BX470248) BP1865; GntR family transcriptional regulator complement(2816232..2816951) Bordetella bronchiseptica RB50 2661704 NP_889192.1 CDS BB2655 NC_002927.3 2817068 2817451 R ortholog of Bordetella pertussis (BX470248) BP1867; hypothetical protein complement(2817068..2817451) Bordetella bronchiseptica RB50 2661191 NP_889193.1 CDS BB2656 NC_002927.3 2817506 2817988 D ortholog of Bordetella pertussis (BX470248) BP1868; cytochrome 2817506..2817988 Bordetella bronchiseptica RB50 2661192 NP_889194.1 CDS BB2657 NC_002927.3 2818001 2819698 R hypothetical protein complement(2818001..2819698) Bordetella bronchiseptica RB50 2661267 NP_889195.1 CDS BB2658 NC_002927.3 2819803 2821176 R glutamate decarboxylase complement(2819803..2821176) Bordetella bronchiseptica RB50 2660173 NP_889196.1 CDS BB2659 NC_002927.3 2821582 2823435 R hypothetical protein complement(2821582..2823435) Bordetella bronchiseptica RB50 2660235 NP_889197.1 CDS BB2660 NC_002927.3 2823548 2825050 D hypothetical protein 2823548..2825050 Bordetella bronchiseptica RB50 2661808 NP_889198.1 CDS BB2661 NC_002927.3 2825155 2825706 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; possibly involved in prevention of copper toxicity; RNA polymerase sigma factor 2825155..2825706 Bordetella bronchiseptica RB50 2661754 NP_889199.1 CDS BB2662 NC_002927.3 2825711 2826502 D hypothetical protein 2825711..2826502 Bordetella bronchiseptica RB50 2661755 NP_889200.1 CDS BB2663 NC_002927.3 2826591 2827313 D hypothetical protein 2826591..2827313 Bordetella bronchiseptica RB50 2660212 NP_889201.1 CDS BB2664 NC_002927.3 2827492 2828703 R two-component response regulator complement(2827492..2828703) Bordetella bronchiseptica RB50 2660213 NP_889202.1 CDS BB2665 NC_002927.3 2829017 2829526 D hypothetical protein 2829017..2829526 Bordetella bronchiseptica RB50 2660192 NP_889203.1 CDS BB2666 NC_002927.3 2829593 2830444 D transmembrane regulator 2829593..2830444 Bordetella bronchiseptica RB50 2660193 NP_889204.1 CDS BB2667 NC_002927.3 2830638 2831075 D universal stress protein 2830638..2831075 Bordetella bronchiseptica RB50 2660194 NP_889205.1 CDS astE NC_002927.3 2831176 2832165 D ortholog of Bordetella pertussis (BX470248) BP1176; succinylglutamate desuccinylase 2831176..2832165 Bordetella bronchiseptica RB50 2660245 NP_889206.1 CDS BB2669 NC_002927.3 2832249 2832617 D ortholog of Bordetella pertussis (BX470248) BP1175; hypothetical protein 2832249..2832617 Bordetella bronchiseptica RB50 2660246 NP_889207.1 CDS BB2670 NC_002927.3 2832695 2833303 R ortholog of Bordetella pertussis (BX470248) BP1174; hypothetical protein complement(2832695..2833303) Bordetella bronchiseptica RB50 2661643 NP_889208.1 CDS BB2671 NC_002927.3 2833372 2834964 D ortholog of Bordetella pertussis (BX470248) BP1172; hypothetical protein 2833372..2834964 Bordetella bronchiseptica RB50 2661644 NP_889209.1 CDS BB2672 NC_002927.3 2834979 2835557 R ortholog of Bordetella pertussis (BX470248) BP1171; hypothetical protein complement(2834979..2835557) Bordetella bronchiseptica RB50 2661659 NP_889210.1 CDS BB2673 NC_002927.3 2835582 2836535 R ortholog of Bordetella pertussis (BX470248) BP1170; hypothetical protein complement(2835582..2836535) Bordetella bronchiseptica RB50 2661660 NP_889211.1 CDS BB2674 NC_002927.3 2836575 2837492 R ortholog of Bordetella pertussis (BX470248) BP1169; oxidoreductase complement(2836575..2837492) Bordetella bronchiseptica RB50 2661691 NP_889212.1 CDS BB2675 NC_002927.3 2837614 2838540 D ortholog of Bordetella pertussis (BX470248) BP1168; LysR family transcriptional regulator 2837614..2838540 Bordetella bronchiseptica RB50 2660024 NP_889213.1 CDS BB2676 NC_002927.3 2838548 2839294 R ortholog of Bordetella pertussis (BX470248) BP1167; hypothetical protein complement(2838548..2839294) Bordetella bronchiseptica RB50 2661681 NP_889214.1 CDS ldcA NC_002927.3 2839621 2840562 D ortholog of Bordetella pertussis (BX470248) BP1166; muramoyltetrapeptide carboxypeptidase 2839621..2840562 Bordetella bronchiseptica RB50 2659306 NP_889215.1 CDS BB2678 NC_002927.3 2840638 2840760 R ortholog of Bordetella pertussis (BX470248) BP1165A; hypothetical protein complement(2840638..2840760) Bordetella bronchiseptica RB50 2659307 NP_889216.1 CDS BB2679 NC_002927.3 2840789 2842687 R ortholog of Bordetella pertussis (BX470248) BP1165; sodium/solute symporter complement(2840789..2842687) Bordetella bronchiseptica RB50 2662150 NP_889217.1 CDS BB2680 NC_002927.3 2842921 2844375 R ortholog of Bordetella pertussis (BX470248) BP1164; hypothetical protein complement(2842921..2844375) Bordetella bronchiseptica RB50 2660342 NP_889218.1 CDS BB2681 NC_002927.3 2844529 2845308 R ortholog of Bordetella pertussis (BX470248) BP1163; short-chain dehydrogenase complement(2844529..2845308) Bordetella bronchiseptica RB50 2660343 NP_889219.1 CDS BB2682 NC_002927.3 2845433 2846317 R ortholog of Bordetella pertussis (BX470248) BP1162; LysR family transcriptional regulator complement(2845433..2846317) Bordetella bronchiseptica RB50 2658951 NP_889220.1 CDS BB2683 NC_002927.3 2846417 2847541 D ortholog of Bordetella pertussis (BX470248) BP1161; racemase 2846417..2847541 Bordetella bronchiseptica RB50 2659422 NP_889221.1 CDS BB2684 NC_002927.3 2847587 2848549 D ortholog of Bordetella pertussis (BX470248) BP1160; lipoprotein 2847587..2848549 Bordetella bronchiseptica RB50 2660209 NP_889222.1 CDS BB2685 NC_002927.3 2848542 2849396 D ortholog of Bordetella pertussis (BX470248) BP1159; 2-pyrone-4,6-dicarboxylic acid hydrolase 2848542..2849396 Bordetella bronchiseptica RB50 2661084 NP_889223.1 CDS BB2686 NC_002927.3 2849502 2849912 D ortholog of Bordetella pertussis (BX470248) BP1158; dioxygenase 2849502..2849912 Bordetella bronchiseptica RB50 2659979 NP_889224.1 CDS BB2687 NC_002927.3 2849941 2851152 R hypothetical protein complement(2849941..2851152) Bordetella bronchiseptica RB50 2659980 NP_889225.1 CDS madF NC_002927.3 2851199 2851423 R biotin protein complement(2851199..2851423) Bordetella bronchiseptica RB50 2662550 NP_889226.1 CDS accC NC_002927.3 2851444 2852808 R Similar to Escherichia coli biotin carboxylase accc or fabg or b3256 SWALL:ACCC_ECOLI (SWALL:P24182) (449 aa) fasta scores: E(): 4.6e-68, 47.81% id in 435 aa, and to Ralstonia solanacearum probable biotin carboxylase accc1 or rsc2787 or rs00060 SWALL:Q8XVP3 (EMBL:AL646071) (456 aa) fasta scores: E(): 7.7e-72, 50.7% id in 428 aa; biotin carboxylase complement(2851444..2852808) Bordetella bronchiseptica RB50 2662551 NP_889227.1 CDS BB2690 NC_002927.3 2852818 2854350 R Similar to Sulfolobus metallicus carboxyl transferase PccB SWALL:O52601 (EMBL:AF042099) (517 aa) fasta scores: E(): 1.8e-49, 32.59% id in 497 aa, and to Archaeoglobus fulgidus methylmalonyl-CoA decarboxylase, subunit alpha af2217 SWALL:O28066 (EMBL:AE000952) (516 aa) fasta scores: E(): 1.1e-54, 35.81% id in 497 aa; carboxyl transferase complement(2852818..2854350) Bordetella bronchiseptica RB50 2659572 NP_889228.1 CDS BB2691 NC_002927.3 2854403 2855383 R Similar to Rhizobium meliloti hypothetical protein ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 6.9e-35, 37.46% id in 323 aa, and to Variovorax paradoxus, and Burkholderia cepacia 2,4-diphenoxyacetic acid gene cluster SWALL:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 7.1e-33, 36.57% id in 309 aa; hypothetical protein complement(2854403..2855383) Bordetella bronchiseptica RB50 2661683 NP_889229.1 CDS BB2692 NC_002927.3 2855517 2856068 D Similar to Rhizobium loti hypothetical protein Mlr2046 SWALL:Q98J90 (EMBL:AP002998) (151 aa) fasta scores: E(): 0.0027, 29.56% id in 115 aa; hypothetical protein 2855517..2856068 Bordetella bronchiseptica RB50 2662465 NP_889230.1 CDS BB2693 NC_002927.3 2856160 2857446 R Similar to Ralstonia solanacearum oxidoreductase rsc3407 or rs01716 SWALL:Q8XTY8 (EMBL:AL646075) (435 aa) fasta scores: E(): 2.3e-85, 56% id in 425 aa, and to Rhizobium loti probable oxidoreductase mll7103 SWALL:Q987C9 (EMBL:AP003011) (427 aa) fasta scores: E(): 2.3e-56, 44.39% id in 419 aa; FAD dependent oxidoreductase complement(2856160..2857446) Bordetella bronchiseptica RB50 2662466 NP_889231.1 CDS dmfA2 NC_002927.3 2857454 2859694 R large subunit of N,N-dimethylformamidase complement(2857454..2859694) Bordetella bronchiseptica RB50 2662467 NP_889232.1 CDS dmfA1 NC_002927.3 2859751 2860059 R small subunit of N,N-dimethylformamidase complement(2859751..2860059) Bordetella bronchiseptica RB50 2661796 NP_889233.1 CDS BB2696 NC_002927.3 2860086 2860877 R ABC transporter permease complement(2860086..2860877) Bordetella bronchiseptica RB50 2661797 NP_889234.1 CDS BB2697 NC_002927.3 2860879 2861718 R ABC transporter permease complement(2860879..2861718) Bordetella bronchiseptica RB50 2661814 NP_889235.1 CDS BB2698 NC_002927.3 2861729 2862781 R ABC transporter substrate-binding protein complement(2861729..2862781) Bordetella bronchiseptica RB50 2662676 NP_889236.1 CDS BB2699 NC_002927.3 2862807 2863895 R ABC transporter ATP-binding protein complement(2862807..2863895) Bordetella bronchiseptica RB50 2662684 NP_889237.1 CDS BB2700 NC_002927.3 2864044 2864838 D transcriptional regulator 2864044..2864838 Bordetella bronchiseptica RB50 2662723 NP_889238.1 CDS BB2701 NC_002927.3 2864849 2865628 R dehydrogenase complement(2864849..2865628) Bordetella bronchiseptica RB50 2662759 NP_889239.1 CDS BB2702 NC_002927.3 2865640 2866386 R carboxymethylenebutenolidase complement(2865640..2866386) Bordetella bronchiseptica RB50 2662801 NP_889240.1 CDS BB2703 NC_002927.3 2866383 2867126 R transcriptional regulator complement(2866383..2867126) Bordetella bronchiseptica RB50 2662802 NP_889241.1 CDS BB2704 NC_002927.3 2867132 2868418 R hypothetical protein complement(2867132..2868418) Bordetella bronchiseptica RB50 2662941 NP_889242.1 CDS BB2705 NC_002927.3 2868438 2868953 R hypothetical protein complement(2868438..2868953) Bordetella bronchiseptica RB50 2662957 NP_889243.1 CDS BB2706 NC_002927.3 2868964 2869965 R hypothetical protein complement(2868964..2869965) Bordetella bronchiseptica RB50 2663042 NP_889244.1 CDS BB2707 NC_002927.3 2870077 2871060 R agmatinase complement(2870077..2871060) Bordetella bronchiseptica RB50 2663043 NP_889245.1 CDS BB2708 NC_002927.3 2871126 2872121 R hypothetical protein complement(2871126..2872121) Bordetella bronchiseptica RB50 2663095 NP_889246.1 CDS BB2709 NC_002927.3 2872297 2873199 D LysR family transcriptional regulator 2872297..2873199 Bordetella bronchiseptica RB50 2663101 NP_889247.1 CDS BB2710 NC_002927.3 2873207 2873992 R hypothetical protein complement(2873207..2873992) Bordetella bronchiseptica RB50 2663165 NP_889248.1 CDS BB2711 NC_002927.3 2873989 2874726 R hypothetical protein complement(2873989..2874726) Bordetella bronchiseptica RB50 2663186 NP_889249.1 CDS BB2712 NC_002927.3 2874827 2875912 R sugar ABC transport system, substrate-binding protein complement(2874827..2875912) Bordetella bronchiseptica RB50 2663187 NP_889250.1 CDS BB2713 NC_002927.3 2875953 2876918 R sugar ABC transport system, permease complement(2875953..2876918) Bordetella bronchiseptica RB50 2663194 NP_889251.1 CDS BB2714 NC_002927.3 2876908 2878461 R sugar ABC transporter ATP-binding protein complement(2876908..2878461) Bordetella bronchiseptica RB50 2663232 NP_889252.1 CDS BB2715 NC_002927.3 2878501 2879385 R hypothetical protein complement(2878501..2879385) Bordetella bronchiseptica RB50 2663355 NP_889253.1 CDS BB2716 NC_002927.3 2879410 2879829 R hypothetical protein complement(2879410..2879829) Bordetella bronchiseptica RB50 2663381 NP_889254.1 CDS BB2717 NC_002927.3 2879886 2881238 R dipeptidase complement(2879886..2881238) Bordetella bronchiseptica RB50 2663382 NP_889255.1 CDS BB2718 NC_002927.3 2881247 2882086 R hydrolase complement(2881247..2882086) Bordetella bronchiseptica RB50 2663436 NP_889256.1 CDS BB2719 NC_002927.3 2882246 2882938 D regulatory protein 2882246..2882938 Bordetella bronchiseptica RB50 2663437 NP_889257.1 CDS BB2720 NC_002927.3 2882985 2884331 R hypothetical protein complement(2882985..2884331) Bordetella bronchiseptica RB50 2663462 NP_889258.1 CDS BB2721 NC_002927.3 2884328 2884699 R transcriptional regulator complement(2884328..2884699) Bordetella bronchiseptica RB50 2663463 NP_889259.1 CDS BB2722 NC_002927.3 2884970 2885425 D hypothetical protein 2884970..2885425 Bordetella bronchiseptica RB50 2663476 NP_889260.1 CDS BB2723 NC_002927.3 2885422 2886159 R ortholog of Bordetella pertussis (BX470248) BP1646; hypothetical protein complement(2885422..2886159) Bordetella bronchiseptica RB50 2663530 NP_889261.1 CDS BB2724 NC_002927.3 2886349 2887107 R ortholog of Bordetella pertussis (BX470248) BP1645; short-chain dehydrogenase complement(2886349..2887107) Bordetella bronchiseptica RB50 2663567 NP_889262.1 CDS BB2725 NC_002927.3 2887154 2888143 R ortholog of Bordetella pertussis (BX470248) BP1644; hypothetical protein complement(2887154..2888143) Bordetella bronchiseptica RB50 2663631 NP_889263.1 CDS BB2726 NC_002927.3 2888325 2889293 R ortholog of Bordetella pertussis (BX470248) BP1643; hypothetical protein complement(2888325..2889293) Bordetella bronchiseptica RB50 2663632 NP_889264.1 CDS BB2727 NC_002927.3 2889637 2890779 D ortholog of Bordetella pertussis (BX470248) BP1642; hypothetical protein 2889637..2890779 Bordetella bronchiseptica RB50 2663633 NP_889265.1 CDS BB2728 NC_002927.3 2890835 2891803 D ortholog of Bordetella pertussis (BX470248) BP1641; regulatory protein 2890835..2891803 Bordetella bronchiseptica RB50 2663674 NP_889266.1 CDS BB2729 NC_002927.3 2891812 2892753 D ortholog of Bordetella pertussis (BX470248) BP1640; hypothetical protein 2891812..2892753 Bordetella bronchiseptica RB50 2663675 NP_889267.1 CDS BB2731 NC_002927.3 2892750 2893241 D ortholog of Bordetella pertussis (BX470248) BP1639A; hypothetical protein 2892750..2893241 Bordetella bronchiseptica RB50 2663786 NP_889268.1 CDS BB2732 NC_002927.3 2893228 2894238 D ortholog of Bordetella pertussis (BX470248) BP1639; hypothetical protein 2893228..2894238 Bordetella bronchiseptica RB50 2663782 NP_889269.1 CDS BB2733 NC_002927.3 2894229 2895743 D ortholog of Bordetella pertussis (BX470248) BP1638; hypothetical protein 2894229..2895743 Bordetella bronchiseptica RB50 2663799 NP_889270.1 CDS BB2734 NC_002927.3 2895740 2897086 D ortholog of Bordetella pertussis (BX470248) BP1637; hypothetical protein 2895740..2897086 Bordetella bronchiseptica RB50 2663800 NP_889271.1 CDS BB2735 NC_002927.3 2897089 2898123 D ortholog of Bordetella pertussis (BX470248) BP1636; nonspecific acid phosphatase precursor 2897089..2898123 Bordetella bronchiseptica RB50 2663811 NP_889272.1 CDS BB2736 NC_002927.3 2898173 2899801 D ortholog of Bordetella pertussis (BX470248) BP1635; arylsulfatase 2898173..2899801 Bordetella bronchiseptica RB50 2663832 NP_889273.1 CDS BB2737 NC_002927.3 2899880 2902426 D ortholog of Bordetella pertussis (BX470248) BP1634; hypothetical protein 2899880..2902426 Bordetella bronchiseptica RB50 2663840 NP_889274.1 CDS BB2738 NC_002927.3 2902429 2903391 D ortholog of Bordetella pertussis (BX470248) BP1657; hypothetical protein 2902429..2903391 Bordetella bronchiseptica RB50 2663841 NP_889275.1 CDS BB2739 NC_002927.3 2903334 2905277 R ortholog of Bordetella pertussis (BX470248) BP1658; two-component sensor histidine kinase complement(2903334..2905277) Bordetella bronchiseptica RB50 2663855 NP_889276.1 CDS BB2740 NC_002927.3 2905270 2905944 R ortholog of Bordetella pertussis (BX470248) BP1659; response regulatory protein complement(2905270..2905944) Bordetella bronchiseptica RB50 2663874 NP_889277.1 CDS sphB2 NC_002927.3 2906074 2909151 D ortholog of Bordetella pertussis (BX470248) BP1660; autotransporter 2906074..2909151 Bordetella bronchiseptica RB50 2660616 NP_889278.1 CDS BB2742 NC_002927.3 2909165 2909464 R ortholog of Bordetella pertussis (BX470248) BP1662; DNA-binding protein complement(2909165..2909464) Bordetella bronchiseptica RB50 2660438 NP_889279.1 CDS BB2743 NC_002927.3 2909467 2909778 R ortholog of Bordetella pertussis (BX470248) BP1663; hypothetical protein complement(2909467..2909778) Bordetella bronchiseptica RB50 2659335 NP_889280.1 CDS gst NC_002927.3 2909892 2910515 R ortholog of Bordetella pertussis (BX470248) BP1664; glutathione S-transferase complement(2909892..2910515) Bordetella bronchiseptica RB50 2662202 NP_889281.1 CDS BB2745 NC_002927.3 2910634 2911587 R ortholog of Bordetella pertussis (BX470248) BP1674; LysR family transcriptional regulator complement(2910634..2911587) Bordetella bronchiseptica RB50 2662203 NP_889282.1 CDS BB2746 NC_002927.3 2911703 2912665 D ortholog of Bordetella pertussis (BX470248) BP1675; hypothetical protein 2911703..2912665 Bordetella bronchiseptica RB50 2659012 NP_889283.1 CDS BB2747 NC_002927.3 2912680 2914074 D ortholog of Bordetella pertussis (BX470248) BP1676; sulfatase 2912680..2914074 Bordetella bronchiseptica RB50 2662226 NP_889284.1 CDS BB2748 NC_002927.3 2914071 2914658 D ortholog of Bordetella pertussis (BX470248) BP1677; hypothetical protein 2914071..2914658 Bordetella bronchiseptica RB50 2663892 NP_889285.1 CDS BB2749 NC_002927.3 2914674 2915645 R Similar to Brucella melitensis alkanal monooxygenase alpha chain bmei0894 SWALL:Q8YHA8 (EMBL:AE009530) (327 aa) fasta scores: E(): 4.5e-57, 51.52% id in 328 aa, and to Escherichia coli hypothetical protein yhbw or b3160 SWALL:YHBW_ECOLI (SWALL:P45529) (335 aa) fasta scores: E(): 1.1e-53, 50.31% id in 318 aa; monooxygenase complement(2914674..2915645) Bordetella bronchiseptica RB50 2663893 NP_889286.1 CDS BB2750 NC_002927.3 2915698 2916795 R Similar to Escherichia coli N-ethylmaleimide reductase NemA or b1650 SWALL:NEMA_ECOLI (SWALL:P77258) (365 aa) fasta scores: E(): 2.2e-53, 43.83% id in 365 aa, and to Yersinia pestis morphinone reductase MorB SWALL:Q93AB5 (EMBL:AF426171) (369 aa) fasta scores: E(): 6.9e-72, 52.17% id in 368 aa; NADH:flavin oxidoreductase complement(2915698..2916795) Bordetella bronchiseptica RB50 2663894 NP_889287.1 CDS BB2751 NC_002927.3 2916803 2917819 R Similar to Ralstonia solanacearum hypothetical protein rsp0908 or rs01680 SWALL:Q8XRE6 (EMBL:AL646081) (319 aa) fasta scores: E(): 2e-44, 44.65% id in 318 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1186 SWALL:Q9I4F2 (EMBL:AE004549) (339 aa) fasta scores: E(): 4.6e-42, 43.51% id in 324 aa; monooxygenase complement(2916803..2917819) Bordetella bronchiseptica RB50 2659304 NP_889288.1 CDS BB2752 NC_002927.3 2917936 2918862 R Similar to Rhizobium loti probable transcriptional regulator mlr2579 SWALL:Q98I42 (EMBL:AP003000) (304 aa) fasta scores: E(): 3.7e-37, 40.26% id in 303 aa, and to Yersinia pestis transcriptional regulator mlr2579 SWALL:Q93AB4 (EMBL:AF426171) (303 aa) fasta scores: E(): 3.4e-35, 37.37% id in 297 aa; LysR family transcriptional regulator complement(2917936..2918862) Bordetella bronchiseptica RB50 2662305 NP_889289.1 CDS BB2753 NC_002927.3 2919039 2920247 R Similar to Alcaligenes eutrophus hypothetical 42.8 kDa protein SWALL:Q9RBG0 (EMBL:AF130250) (401 aa) fasta scores: E(): 1.2e-45, 40.81% id in 370 aa, and to Ralstonia solanacearum salicylate hydroxylase oxidoreductase rsp0911 or rs01683 SWALL:Q8XRE3 (EMBL:AL646081) (397 aa) fasta scores: E(): 2.9e-44, 38.77% id in 374 aa; hypothetical protein complement(2919039..2920247) Bordetella bronchiseptica RB50 2659815 NP_889290.1 CDS BB2754 NC_002927.3 2920240 2920725 R Similar to Ralstonia solanacearum hypothetical protein rsc2017 or rs03585 SWALL:Q8XXU6 (EMBL:AL646067) (134 aa) fasta scores: E(): 0.00069, 33.84% id in 130 aa, and to Arabidopsis thaliana at2g28420/t1b3.6 SWALL:Q941C8 (EMBL:AY052254) (184 aa) fasta scores: E(): 0.013, 31.54% id in 168 aa; dioxygenase complement(2920240..2920725) Bordetella bronchiseptica RB50 2661422 NP_889291.1 CDS BB2755 NC_002927.3 2920922 2922127 D Similar to Ralstonia solanacearum substrate-binding periplasmic rsc3342 or rs02578 SWALL:Q8XU51 (EMBL:AL646074) (402 aa) fasta scores: E(): 7.2e-29, 31.13% id in 395 aa, and to Brucella melitensis branched-chain amino acid ABC transporter periplasmic amino acid-binding protein bmeii0344 SWALL:Q8YD33 (EMBL:AE009671) (401 aa) fasta scores: E(): 3.3e-21, 26.75% id in 385 aa; ABC transporter substrate-binding protein 2920922..2922127 Bordetella bronchiseptica RB50 2661423 NP_889292.1 CDS BB2756 NC_002927.3 2922179 2923054 D Similar to Rhizobium meliloti permease ABC transporter protein r02975 or smc03118 SWALL:Q92LQ5 (EMBL:AL591792) (295 aa) fasta scores: E(): 6.5e-47, 50.17% id in 281 aa, and to Agrobacterium tumefaciens ABC transporter membrane spanning protein atu4126 or agr_l_1455 SWALL:Q8U8G6 (EMBL:AE009343) (295 aa) fasta scores: E(): 6.5e-47, 48.44% id in 289 aa; permease of ABC transporter protein 2922179..2923054 Bordetella bronchiseptica RB50 2659569 NP_889293.1 CDS BB2757 NC_002927.3 2923066 2924055 D Similar to Agrobacterium tumefaciens ABC transporter membrane spanning protein atu4127 or agr_l_1453 SWALL:Q8U8G5 (EMBL:AE009343) (335 aa) fasta scores: E(): 3.7e-37, 40.82% id in 316 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc3340 or rs02575 SWALL:Q8XU53 (EMBL:AL646074) (328 aa) fasta scores: E(): 6e-36, 42.12% id in 311 aa; ABC transporter permease 2923066..2924055 Bordetella bronchiseptica RB50 2659890 NP_889294.1 CDS BB2758 NC_002927.3 2924045 2924797 D Similar to Ralstonia solanacearum probable ATP-binding ABC transporter protein rsc3344 or rs02581 SWALL:Q8XU49 (EMBL:AL646074) (256 aa) fasta scores: E(): 2.5e-35, 46.15% id in 247 aa, and to Deinococcus radiodurans branched-chain amino acid ABC transporter ATP-binding protein dr0283 SWALL:Q9RXM7 (EMBL:AE001889) (290 aa) fasta scores: E(): 4.3e-33, 44.96% id in 258 aa; branched-chain amino acid ABC transporter ATP-binding protein 2924045..2924797 Bordetella bronchiseptica RB50 2660571 NP_889295.1 CDS BB2759 NC_002927.3 2924806 2925510 D Similar to Thermotoga maritima branched chain amino acid ABC transporter ATP-binding protein tm1139 SWALL:Q9X0M3 (EMBL:AE001771) (239 aa) fasta scores: E(): 1.4e-32, 47.05% id in 238 aa, and to Deinococcus radiodurans branched-chain amino acid ABC transporter ATP-binding protein dr1034 SWALL:Q9RVJ4 (EMBL:AE001955) (252 aa) fasta scores: E(): 5.8e-32, 46.12% id in 232 aa; branched-chain amino acid ABC transporter ATP-binding protein 2924806..2925510 Bordetella bronchiseptica RB50 2661598 NP_889296.1 CDS BB2760 NC_002927.3 2925667 2926257 D Similar to Thermotoga maritima transcriptional regulator, TetR family tm1030 SWALL:Q9X0C0 (EMBL:AE001764) (200 aa) fasta scores: E(): 0.032, 22.88% id in 201 aa, and to Clostridium acetobutylicum transcriptional regulator, AcRR family cac3271 SWALL:Q97E45 (EMBL:AE007822) (205 aa) fasta scores: E(): 0.0027, 20.94% id in 191 aa; TetR family transcriptional regulator 2925667..2926257 Bordetella bronchiseptica RB50 2659932 NP_889297.1 CDS BB2761 NC_002927.3 2926271 2927098 R transcriptional regulatory protein complement(2926271..2927098) Bordetella bronchiseptica RB50 2660187 NP_889298.1 CDS BB2762 NC_002927.3 2927250 2928476 R hypothetical protein complement(2927250..2928476) Bordetella bronchiseptica RB50 2659272 NP_889299.1 CDS BB2763 NC_002927.3 2928514 2929656 R thiolase complement(2928514..2929656) Bordetella bronchiseptica RB50 2659649 NP_889300.1 CDS BB2764 NC_002927.3 2929676 2930095 R hypothetical protein complement(2929676..2930095) Bordetella bronchiseptica RB50 2659747 NP_889301.1 CDS BB2765 NC_002927.3 2930175 2931191 R hypothetical protein complement(2930175..2931191) Bordetella bronchiseptica RB50 2659189 NP_889302.1 CDS BB2766 NC_002927.3 2931336 2932274 R short chain dehydrogenase complement(2931336..2932274) Bordetella bronchiseptica RB50 2659190 NP_889303.1 CDS BB2767 NC_002927.3 2932365 2933246 R LysR family transcriptional regulator complement(2932365..2933246) Bordetella bronchiseptica RB50 2660365 NP_889304.1 CDS BB2768 NC_002927.3 2933408 2934379 D hypothetical protein 2933408..2934379 Bordetella bronchiseptica RB50 2659340 NP_889305.1 CDS BB2769 NC_002927.3 2934376 2935623 D hypothetical protein 2934376..2935623 Bordetella bronchiseptica RB50 2659084 NP_889306.1 CDS caiD NC_002927.3 2935620 2936378 D carnitinyl-CoA dehydratase 2935620..2936378 Bordetella bronchiseptica RB50 2662732 NP_889307.1 CDS paaG NC_002927.3 2936407 2937207 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2936407..2937207 Bordetella bronchiseptica RB50 2662763 NP_889308.1 CDS BB2772 NC_002927.3 2937238 2938212 D hypothetical protein 2937238..2938212 Bordetella bronchiseptica RB50 2662764 NP_889309.1 CDS BB2773 NC_002927.3 2938223 2940307 D enoyl-CoA hydratase 2938223..2940307 Bordetella bronchiseptica RB50 2662945 NP_889310.1 CDS BB2774 NC_002927.3 2940304 2941488 D ketoacyl CoA thiolase 2940304..2941488 Bordetella bronchiseptica RB50 2662984 NP_889311.1 CDS BB2775 NC_002927.3 2941485 2942639 D alcohol dehydrogenase 2941485..2942639 Bordetella bronchiseptica RB50 2663021 NP_889312.1 CDS BB2776 NC_002927.3 2942636 2943103 D 4-hydroxybenzoyl-CoA thioesterase 2942636..2943103 Bordetella bronchiseptica RB50 2663122 NP_889313.1 CDS dadA3 NC_002927.3 2943134 2944345 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(2943134..2944345) Bordetella bronchiseptica RB50 2663268 NP_889314.1 CDS BB2778 NC_002927.3 2944689 2945894 R monooxygenase complement(2944689..2945894) Bordetella bronchiseptica RB50 2663269 NP_889315.1 CDS BB2779 NC_002927.3 2945934 2946929 R hypothetical protein complement(2945934..2946929) Bordetella bronchiseptica RB50 2663344 NP_889316.1 CDS BB2780 NC_002927.3 2947087 2947989 D ortholog of Bordetella pertussis (BX470248) BP1679; LysR family transcriptional regulator 2947087..2947989 Bordetella bronchiseptica RB50 2663350 NP_889317.1 CDS arsH NC_002927.3 2947986 2948708 R ortholog of Bordetella pertussis (BX470248) BP1680; NADPH-dependent FMN reductase complement(2947986..2948708) Bordetella bronchiseptica RB50 2663358 NP_889318.1 CDS arsC NC_002927.3 2948701 2949144 R ortholog of Bordetella pertussis (BX470248) BP1681; arsenate reductase complement(2948701..2949144) Bordetella bronchiseptica RB50 2663394 NP_889319.1 CDS BB2783 NC_002927.3 2949147 2950334 R ortholog of Bordetella pertussis (BX470248) BP1682; hypothetical protein complement(2949147..2950334) Bordetella bronchiseptica RB50 2663489 NP_889320.1 CDS BB2784 NC_002927.3 2950338 2950718 R ortholog of Bordetella pertussis (BX470248) BP1683; transcriptional regulator complement(2950338..2950718) Bordetella bronchiseptica RB50 2663490 NP_889321.1 CDS BB2785 NC_002927.3 2950936 2952675 D ortholog of Bordetella pertussis (BX470248) BP1684; hypothetical protein 2950936..2952675 Bordetella bronchiseptica RB50 2663493 NP_889322.1 CDS BB2786 NC_002927.3 2952736 2953707 D ortholog of Bordetella pertussis (BX470248) BP1685; hypothetical protein 2952736..2953707 Bordetella bronchiseptica RB50 2663494 NP_889323.1 CDS BB2787 NC_002927.3 2953721 2954434 D ortholog of Bordetella pertussis (BX470248) BP1686; short chain dehydrogenase 2953721..2954434 Bordetella bronchiseptica RB50 2663509 NP_889324.1 CDS BB2788 NC_002927.3 2954439 2955356 R ortholog of Bordetella pertussis (BX470248) BP1687; LysR family transcriptional regulator complement(2954439..2955356) Bordetella bronchiseptica RB50 2663519 NP_889325.1 CDS BB2789 NC_002927.3 2955463 2955759 D ortholog of Bordetella pertussis (BX470248) BP1688; hypothetical protein 2955463..2955759 Bordetella bronchiseptica RB50 2663565 NP_889326.1 CDS BB2790 NC_002927.3 2955920 2956867 R hypothetical protein complement(2955920..2956867) Bordetella bronchiseptica RB50 2663566 NP_889327.1 CDS BB2791 NC_002927.3 2957088 2958251 D Similar to Alcaligenes eutrophus maleylacetate reductase I TfdfI or TfdF SWALL:TFF1_ALCEU (SWALL:P27137) (354 aa) fasta scores: E(): 1e-15, 27.71% id in 368 aa, and to Sulfolobus solfataricus maleylacetate reductase ClcE or sso2490 SWALL:Q97VW4 (EMBL:AE006847) (327 aa) fasta scores: E(): 5.2e-18, 28.74% id in 334 aa; iron-containing alcohol dehydrogenase 2957088..2958251 Bordetella bronchiseptica RB50 2663590 NP_889328.1 CDS BB2792 NC_002927.3 2958311 2959852 D hypothetical protein 2958311..2959852 Bordetella bronchiseptica RB50 2663722 NP_889329.1 CDS BB2793 NC_002927.3 2959894 2960655 D hypothetical protein 2959894..2960655 Bordetella bronchiseptica RB50 2663747 NP_889330.1 CDS BB2794 NC_002927.3 2960665 2961285 R Similar to Rhizobium meliloti hypothetical protein rb0633 rb0633 or smb21054 SWALL:Q92VR6 (EMBL:AL603644) (205 aa) fasta scores: E(): 1.1e-07, 28.23% id in 209 aa; hypothetical protein complement(2960665..2961285) Bordetella bronchiseptica RB50 2660580 NP_889331.1 CDS BB2795 NC_002927.3 2961440 2962192 R Similar to Salmonella typhi ABC-transport ATP-binding protein sty2159 SWALL:Q8Z5T0 (EMBL:AL627272) (250 aa) fasta scores: E(): 3.1e-43, 56.62% id in 249 aa, and to Streptomyces coelicolor ATP-binding protein atrc or sco5258 or 2sc7g11.20C SWALL:Q9F3K7 (EMBL:AL391763) (253 aa) fasta scores: E(): 6.7e-43, 55.6% id in 250 aa; ABC transporter ATP-binding protein complement(2961440..2962192) Bordetella bronchiseptica RB50 2660581 NP_889332.1 CDS BB2796 NC_002927.3 2962218 2962871 R Similar to Escherichia coli O157:H7 transport system permease YecS or z3006 or ecs2656 SWALL:Q8XBC8 (EMBL:AE005414) (222 aa) fasta scores: E(): 1.6e-23, 40.27% id in 221 aa, and to Listeria innocua hypothetical protein Lin1851 lin1851 SWALL:Q92AR8 (EMBL:AL596170) (213 aa) fasta scores: E(): 7.1e-40, 50.23% id in 215 aa; ABC transporter permease complement(2962218..2962871) Bordetella bronchiseptica RB50 2660885 NP_889333.1 CDS BB2797 NC_002927.3 2962966 2963757 R Similar to Clostridium perfringens probable amino acid ABC transporter cpe1324 SWALL:Q8XKS0 (EMBL:AP003190) (262 aa) fasta scores: E(): 2.5e-36, 41.79% id in 268 aa, and to Streptococcus pneumoniae R6 ABC transporter substrate-binding protein-glutamine transport glnH SWALL:AAL00157 (EMBL:AE008505) (278 aa) fasta scores: E(): 8.9e-29, 34.81% id in 270 aa; amino acid ABC transporter substrate-binding protein complement(2962966..2963757) Bordetella bronchiseptica RB50 2660093 NP_889334.1 CDS napE NC_002927.3 2964055 2964213 D Similar to Paracoccus pantotrophus NapE protein napE SWALL:NAPE_PARPN (SWALL:Q56348) (59 aa) fasta scores: E(): 1.7e-05, 43.75% id in 48 aa, and to Pseudomonas sp. G-179 NapE napE SWALL:Q9Z3W7 (EMBL:AF083948) (71 aa) fasta scores: E(): 2.9e-05, 50% id in 42 aa; nitrate reductase NapE 2964055..2964213 Bordetella bronchiseptica RB50 2661818 NP_889335.1 CDS napD NC_002927.3 2964213 2964548 D Similar to Rhodobacter sphaeroides f. sp. denitrificans NapD precursor SWALL:O88156 (EMBL:AF069545) (88 aa) fasta scores: E(): 0.0007, 33.33% id in 84 aa, and to Agrobacterium tumefaciens periplasmic nitrate reductase, napd protein napd or atu4407 or agr_l_919 SWALL:Q8U7P2 (EMBL:AE009369) (95 aa) fasta scores: E(): 0.00016, 30.33% id in 89 aa; nitrate reductase NapD 2964213..2964548 Bordetella bronchiseptica RB50 2661819 NP_889336.1 CDS napA NC_002927.3 2964538 2967027 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase NapA 2964538..2967027 Bordetella bronchiseptica RB50 2661370 NP_889337.1 CDS napB NC_002927.3 2967047 2967523 D diheme cytochrome C precursor 2967047..2967523 Bordetella bronchiseptica RB50 2661854 NP_889338.1 CDS napC NC_002927.3 2967531 2968193 D cytochrome C-type protein 2967531..2968193 Bordetella bronchiseptica RB50 2661102 NP_889339.1 CDS ccmA NC_002927.3 2968180 2968854 D heme export protein 2968180..2968854 Bordetella bronchiseptica RB50 2660050 NP_889340.1 CDS ccmB NC_002927.3 2968910 2969485 D Heme exporter protein B 2968910..2969485 Bordetella bronchiseptica RB50 2662767 NP_889341.1 CDS ccmC NC_002927.3 2969493 2970278 D heme export protein 2969493..2970278 Bordetella bronchiseptica RB50 2662675 NP_889342.1 CDS BB2806 NC_002927.3 2970275 2970427 D hypothetical protein 2970275..2970427 Bordetella bronchiseptica RB50 2660595 NP_889343.1 CDS ccmE NC_002927.3 2970414 2970875 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome C biogenesis protein CcmE 2970414..2970875 Bordetella bronchiseptica RB50 2660596 NP_889344.1 CDS ccmF NC_002927.3 2970872 2972866 D cytochrome C-type biogenesis protein 2970872..2972866 Bordetella bronchiseptica RB50 2660750 NP_889345.1 CDS ccmG NC_002927.3 2972866 2973387 D cytochrome C-type biogenesis protein 2972866..2973387 Bordetella bronchiseptica RB50 2659699 NP_889346.1 CDS ccmH NC_002927.3 2973384 2973806 D cytochrome C-type biogenesis protein 2973384..2973806 Bordetella bronchiseptica RB50 2660824 NP_889347.1 CDS cycH NC_002927.3 2973803 2975032 D cytochrome C-type biogenesis protein 2973803..2975032 Bordetella bronchiseptica RB50 2660898 NP_889348.1 CDS BB2812 NC_002927.3 2975111 2975524 D hypothetical protein 2975111..2975524 Bordetella bronchiseptica RB50 2659660 NP_889349.1 CDS BB2813 NC_002927.3 2975638 2976060 D hypothetical protein 2975638..2976060 Bordetella bronchiseptica RB50 2659661 NP_889350.1 CDS BB2814 NC_002927.3 2976221 2977138 R ortholog of Bordetella pertussis (BX470248) BP1360; ketopantoate reductase complement(2976221..2977138) Bordetella bronchiseptica RB50 2659659 NP_889351.1 CDS BB2815 NC_002927.3 2977149 2978327 R ortholog of Bordetella pertussis (BX470248) BP1359; mandelate racemase complement(2977149..2978327) Bordetella bronchiseptica RB50 2659988 NP_889352.1 CDS BB2816 NC_002927.3 2978347 2979342 R ortholog of Bordetella pertussis (BX470248) BP1358; hypothetical protein complement(2978347..2979342) Bordetella bronchiseptica RB50 2660840 NP_889353.1 CDS leuC NC_002927.3 2979512 2980939 D dehydratase, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2979512..2980939 Bordetella bronchiseptica RB50 2660841 NP_889354.1 CDS leuD NC_002927.3 2980941 2981549 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2980941..2981549 Bordetella bronchiseptica RB50 2662101 NP_889355.1 CDS BB2819 NC_002927.3 2981537 2982577 D ortholog of Bordetella pertussis (BX470248) BP1355; LacI family transcriptional regulator 2981537..2982577 Bordetella bronchiseptica RB50 2662102 NP_889356.1 CDS BB2820 NC_002927.3 2982595 2983557 R ortholog of Bordetella pertussis (BX470248) BP1354; hypothetical protein complement(2982595..2983557) Bordetella bronchiseptica RB50 2663956 NP_889357.1 CDS BB2821 NC_002927.3 2983554 2984747 R ortholog of Bordetella pertussis (BX470248) BP1353; hypothetical protein complement(2983554..2984747) Bordetella bronchiseptica RB50 2660303 NP_889358.1 CDS BB2822 NC_002927.3 2984744 2985541 R Catalyzes the first step in the citric acid cycle. Oxaloacetate and acetyl-CoA bind to citrate synthase, which then catalyzes the reaction which joins the two compounds together; citrate synthase complement(2984744..2985541) Bordetella bronchiseptica RB50 2660862 NP_889359.1 CDS BB2823 NC_002927.3 2985567 2986553 R ortholog of Bordetella pertussis (BX470248) BP1351; hypothetical protein complement(2985567..2986553) Bordetella bronchiseptica RB50 2660863 NP_889360.1 CDS BB2824 NC_002927.3 2986572 2988611 R ortholog of Bordetella pertussis (BX470248) BP1350; acetyl-CoA synthetase complement(2986572..2988611) Bordetella bronchiseptica RB50 2662119 NP_889361.1 CDS BB2825 NC_002927.3 2988813 2989493 D ortholog of Bordetella pertussis (BX470248) BP1349; GntR family transcriptional regulator 2988813..2989493 Bordetella bronchiseptica RB50 2661206 NP_889362.1 CDS citE NC_002927.3 2989507 2990418 R ortholog of Bordetella pertussis (BX470248) BP1348; citrate lyase subunit beta complement(2989507..2990418) Bordetella bronchiseptica RB50 2661223 NP_889363.1 CDS BB2827 NC_002927.3 2990415 2990993 R ortholog of Bordetella pertussis (BX470248) BP1347; reductase complement(2990415..2990993) Bordetella bronchiseptica RB50 2661224 NP_889364.1 CDS BB2828 NC_002927.3 2991132 2992037 D ortholog of Bordetella pertussis (BX470248) BP1346; LysR family transcriptional regulator 2991132..2992037 Bordetella bronchiseptica RB50 2661225 NP_889365.1 CDS BB2829 NC_002927.3 2992045 2995464 D ortholog of Bordetella pertussis (BX470248) BP1345; hypothetical protein 2992045..2995464 Bordetella bronchiseptica RB50 2659076 NP_889366.1 CDS BB2830 NC_002927.3 2995452 2998001 R ortholog of Bordetella pertussis (BX470248) BP1344; autotransporter complement(2995452..2998001) Bordetella bronchiseptica RB50 2658996 NP_889367.1 CDS mxcB NC_002927.3 2998214 2999014 R ortholog of Bordetella pertussis (BX470248) BP1343; iron utilization protein complement(2998214..2999014) Bordetella bronchiseptica RB50 2659057 NP_889368.1 CDS BB2832 NC_002927.3 2999040 2999672 R ortholog of Bordetella pertussis (BX470248) BP1342; hypothetical protein complement(2999040..2999672) Bordetella bronchiseptica RB50 2659058 NP_889369.1 CDS BB2833 NC_002927.3 2999780 2999992 R ortholog of Bordetella pertussis (BX470248) BP1341; hypothetical protein complement(2999780..2999992) Bordetella bronchiseptica RB50 2662442 NP_889370.1 CDS BB2834 NC_002927.3 3000086 3000844 D ortholog of Bordetella pertussis (BX470248) BP1340; hypothetical protein 3000086..3000844 Bordetella bronchiseptica RB50 2662443 NP_889371.1 CDS BB2835 NC_002927.3 3000841 3002043 D ortholog of Bordetella pertussis (BX470248) BP1339; cardiolipin synthase 2 3000841..3002043 Bordetella bronchiseptica RB50 2660892 NP_889372.1 CDS BB2836 NC_002927.3 3002040 3002987 D ortholog of Bordetella pertussis (BX470248) BP1338; hypothetical protein 3002040..3002987 Bordetella bronchiseptica RB50 2661405 NP_889373.1 CDS BB2837 NC_002927.3 3003041 3004186 D ortholog of Bordetella pertussis (BX470248) BP1335; hypothetical protein 3003041..3004186 Bordetella bronchiseptica RB50 2662833 NP_889374.1 CDS BB2838 NC_002927.3 3004206 3004928 D ortholog of Bordetella pertussis (BX470248) BP1334; hypothetical protein 3004206..3004928 Bordetella bronchiseptica RB50 2662834 NP_889375.1 CDS BB2839 NC_002927.3 3005045 3005224 D ortholog of Bordetella pertussis (BX470248) BP1333; hypothetical protein 3005045..3005224 Bordetella bronchiseptica RB50 2662835 NP_889376.1 CDS BB2840 NC_002927.3 3005221 3006246 D ortholog of Bordetella pertussis (BX470248) BP1332A; hypothetical protein 3005221..3006246 Bordetella bronchiseptica RB50 2662879 NP_889377.1 CDS BB2841 NC_002927.3 3006232 3006531 R hypothetical protein complement(3006232..3006531) Bordetella bronchiseptica RB50 2662880 NP_889378.1 CDS BB2842 NC_002927.3 3006622 3006954 D hypothetical protein 3006622..3006954 Bordetella bronchiseptica RB50 2662881 NP_889379.1 CDS BB2843 NC_002927.3 3007015 3007338 D hypothetical protein 3007015..3007338 Bordetella bronchiseptica RB50 2662882 NP_889380.1 CDS BB2844 NC_002927.3 3007388 3008314 D hypothetical protein 3007388..3008314 Bordetella bronchiseptica RB50 2662929 NP_889381.1 CDS ligD NC_002927.3 3008333 3010795 D catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 3008333..3010795 Bordetella bronchiseptica RB50 2662930 NP_889382.1 CDS BB2846 NC_002927.3 3010866 3011873 D short chain dehydrogenase 3010866..3011873 Bordetella bronchiseptica RB50 2662981 NP_889383.1 CDS BB2847 NC_002927.3 3011878 3012351 R hypothetical protein complement(3011878..3012351) Bordetella bronchiseptica RB50 2663190 NP_889384.1 CDS BB2848 NC_002927.3 3012483 3013142 R hypothetical protein complement(3012483..3013142) Bordetella bronchiseptica RB50 2663191 NP_889385.1 CDS BB2849 NC_002927.3 3013139 3013879 R hypothetical protein complement(3013139..3013879) Bordetella bronchiseptica RB50 2663208 NP_889386.1 CDS BB2850 NC_002927.3 3013963 3014382 D hypothetical protein 3013963..3014382 Bordetella bronchiseptica RB50 2663209 NP_889387.1 CDS BB2851 NC_002927.3 3014434 3014922 D hypothetical protein 3014434..3014922 Bordetella bronchiseptica RB50 2663210 NP_889388.1 CDS BB2852 NC_002927.3 3014973 3015416 R hypothetical protein complement(3014973..3015416) Bordetella bronchiseptica RB50 2663245 NP_889389.1 CDS BB2853 NC_002927.3 3015431 3016174 R hypothetical protein complement(3015431..3016174) Bordetella bronchiseptica RB50 2663246 NP_889390.1 CDS BB2854 NC_002927.3 3016363 3016707 R hypothetical protein complement(3016363..3016707) Bordetella bronchiseptica RB50 2663247 NP_889391.1 CDS BB2855 NC_002927.3 3016813 3017046 R hypothetical protein complement(3016813..3017046) Bordetella bronchiseptica RB50 2663363 NP_889392.1 CDS BB2856 NC_002927.3 3017095 3018861 R catalyzes the formation of acetate from pyruvate; thiamine pyrophosphate protein complement(3017095..3018861) Bordetella bronchiseptica RB50 2663364 NP_889393.1 CDS zraR NC_002927.3 3018937 3020325 R transcriptional regulatory protein complement(3018937..3020325) Bordetella bronchiseptica RB50 2663414 NP_889394.1 CDS BB2858 NC_002927.3 3020645 3021583 D transcriptional regulatory protein 3020645..3021583 Bordetella bronchiseptica RB50 2663547 NP_889395.1 CDS rpoN NC_002927.3 3021666 3023114 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3021666..3023114 Bordetella bronchiseptica RB50 2663663 NP_889396.1 CDS BB2860 NC_002927.3 3023143 3023559 R hypothetical protein complement(3023143..3023559) Bordetella bronchiseptica RB50 2663692 NP_889397.1 CDS glgA NC_002927.3 3023817 3025349 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 3023817..3025349 Bordetella bronchiseptica RB50 2663693 NP_889398.1 CDS BB2862 NC_002927.3 3025361 3028549 D ortholog of Bordetella pertussis (BX470248) BP1330; alpha-amylase 3025361..3028549 Bordetella bronchiseptica RB50 2663715 NP_889399.1 CDS BB2863 NC_002927.3 3028561 3031902 D ortholog of Bordetella pertussis (BX470248) BP1329; alpha-glucosidase 3028561..3031902 Bordetella bronchiseptica RB50 2663760 NP_889400.1 CDS glgB NC_002927.3 3031899 3034094 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 3031899..3034094 Bordetella bronchiseptica RB50 2659811 NP_889401.1 CDS glgX NC_002927.3 3034099 3036219 D ortholog of Bordetella pertussis (BX470248) BP1327; glycosyl hydrolase 3034099..3036219 Bordetella bronchiseptica RB50 2661379 NP_889402.1 CDS BB2866 NC_002927.3 3036216 3037970 D ortholog of Bordetella pertussis (BX470248) BP1326; alpha-amylase 3036216..3037970 Bordetella bronchiseptica RB50 2661363 NP_889403.1 CDS malQ NC_002927.3 3037967 3039985 D ortholog of Bordetella pertussis (BX470248) BP1324; 4-alpha-glucanotransferase 3037967..3039985 Bordetella bronchiseptica RB50 2661341 NP_889404.1 CDS BB2868 NC_002927.3 3039982 3042525 D ortholog of Bordetella pertussis (BX470248) BP1323; alpha-amylase 3039982..3042525 Bordetella bronchiseptica RB50 2659833 NP_889405.1 CDS BB2869 NC_002927.3 3042516 3045488 R ortholog of Bordetella pertussis (BX470248) BP1322; two-component sensor histidine kinase complement(3042516..3045488) Bordetella bronchiseptica RB50 2660674 NP_889406.1 CDS pdxK NC_002927.3 3045589 3046443 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase complement(3045589..3046443) Bordetella bronchiseptica RB50 2661752 NP_889407.1 CDS BB2871 NC_002927.3 3046440 3047255 R ortholog of Bordetella pertussis (BX470248) BP1320; hypothetical protein complement(3046440..3047255) Bordetella bronchiseptica RB50 2661753 NP_889408.1 CDS BB2872 NC_002927.3 3047315 3048646 D ortholog of Bordetella pertussis (BX470248) BP1319; GntR family transcriptional regulator 3047315..3048646 Bordetella bronchiseptica RB50 2660085 NP_889409.1 CDS BB2873 NC_002927.3 3048685 3049191 D ortholog of Bordetella pertussis (BX470248) BP1318; hypothetical protein 3048685..3049191 Bordetella bronchiseptica RB50 2659234 NP_889410.1 CDS BB2874 NC_002927.3 3049232 3049786 D ortholog of Bordetella pertussis (BX470248) BP1316; hypothetical protein 3049232..3049786 Bordetella bronchiseptica RB50 2659235 NP_889411.1 CDS BB2875 NC_002927.3 3049858 3050283 D ortholog of Bordetella pertussis (BX470248) BP1315; universal stress family protein 3049858..3050283 Bordetella bronchiseptica RB50 2660109 NP_889412.1 CDS BB2876 NC_002927.3 3050316 3051203 D ortholog of Bordetella pertussis (BX470248) BP1314; hypothetical protein 3050316..3051203 Bordetella bronchiseptica RB50 2660233 NP_889413.1 CDS BB2877 NC_002927.3 3051206 3051529 R ortholog of Bordetella pertussis (BX470248) BP1313; hypothetical protein complement(3051206..3051529) Bordetella bronchiseptica RB50 2660234 NP_889414.1 CDS BB2878 NC_002927.3 3051526 3052563 R ortholog of Bordetella pertussis (BX470248) BP1312; metalloprotease complement(3051526..3052563) Bordetella bronchiseptica RB50 2659313 NP_889415.1 CDS BB2879 NC_002927.3 3052768 3053172 D ortholog of Bordetella pertussis (BX470248) BP1311; hypothetical protein 3052768..3053172 Bordetella bronchiseptica RB50 2661295 NP_889416.1 CDS BB2880 NC_002927.3 3053354 3054583 D ortholog of Bordetella pertussis (BX470248) BP1310; hypothetical protein 3053354..3054583 Bordetella bronchiseptica RB50 2659672 NP_889417.1 CDS BB2881 NC_002927.3 3054676 3055215 D ortholog of Bordetella pertussis (BX470248) BP1307; bacterioferritin comigratory protein 3054676..3055215 Bordetella bronchiseptica RB50 2659673 NP_889418.1 CDS arsC NC_002927.3 3055322 3055666 R ortholog of Bordetella pertussis (BX470248) BP1306; arsenate reductase complement(3055322..3055666) Bordetella bronchiseptica RB50 2661669 NP_889419.1 CDS BB2883 NC_002927.3 3055724 3057172 R ortholog of Bordetella pertussis (BX470248) BP1305; hypothetical protein complement(3055724..3057172) Bordetella bronchiseptica RB50 2663935 NP_889420.1 CDS BB2884 NC_002927.3 3057360 3057695 R ortholog of Bordetella pertussis (BX470248) BP1304; hypothetical protein complement(3057360..3057695) Bordetella bronchiseptica RB50 2663936 NP_889421.1 CDS BB2885 NC_002927.3 3057871 3059463 D ortholog of Bordetella pertussis (BX470248) BP1303; hypothetical protein 3057871..3059463 Bordetella bronchiseptica RB50 2660304 NP_889422.1 CDS BB2886 NC_002927.3 3059487 3060665 D ortholog of Bordetella pertussis (BX470248) BP1302; hypothetical protein 3059487..3060665 Bordetella bronchiseptica RB50 2660305 NP_889423.1 CDS BB2887 NC_002927.3 3060748 3061248 D ortholog of Bordetella pertussis (BX470248) BP1301; glutathione peroxidase 3060748..3061248 Bordetella bronchiseptica RB50 2660306 NP_889424.1 CDS BB2888 NC_002927.3 3061274 3062059 D ortholog of Bordetella pertussis (BX470248) BP1300; glutathione transferase 3061274..3062059 Bordetella bronchiseptica RB50 2660929 NP_889425.1 CDS BB2889 NC_002927.3 3062071 3062535 D ortholog of Bordetella pertussis (BX470248) BP1299; acetyltransferase 3062071..3062535 Bordetella bronchiseptica RB50 2660926 NP_889426.1 CDS BB2890 NC_002927.3 3062532 3062825 D ortholog of Bordetella pertussis (BX470248) BP1298; hypothetical protein 3062532..3062825 Bordetella bronchiseptica RB50 2660923 NP_889427.1 CDS BB2891 NC_002927.3 3062822 3063598 D ortholog of Bordetella pertussis (BX470248) BP1297; lipoate-protein ligase A 3062822..3063598 Bordetella bronchiseptica RB50 2660924 NP_889428.1 CDS BB2892 NC_002927.3 3063627 3064454 D ortholog of Bordetella pertussis (BX470248) BP1296; lipoprotein 3063627..3064454 Bordetella bronchiseptica RB50 2660919 NP_889429.1 CDS BB2893 NC_002927.3 3064580 3065050 D ortholog of Bordetella pertussis (BX470248) BP1295; hypothetical protein 3064580..3065050 Bordetella bronchiseptica RB50 2660847 NP_889430.1 CDS psd NC_002927.3 3065177 3066070 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3065177..3066070 Bordetella bronchiseptica RB50 2660848 NP_889431.1 CDS lldD NC_002927.3 3066155 3067363 D ortholog of Bordetella pertussis (BX470248) BP1293; L-lactate dehydrogenase 3066155..3067363 Bordetella bronchiseptica RB50 2660849 NP_889432.1 CDS BB2896 NC_002927.3 3067376 3068191 R ortholog of Bordetella pertussis (BX470248) BP1292; hypothetical protein complement(3067376..3068191) Bordetella bronchiseptica RB50 2660801 NP_889433.1 CDS BB2897 NC_002927.3 3068325 3068846 R ortholog of Bordetella pertussis (BX470248) BP1291; hypothetical protein complement(3068325..3068846) Bordetella bronchiseptica RB50 2660744 NP_889434.1 CDS BB2898 NC_002927.3 3068843 3069340 R ortholog of Bordetella pertussis (BX470248) BP1290; hypothetical protein complement(3068843..3069340) Bordetella bronchiseptica RB50 2660745 NP_889435.1 CDS BB2899 NC_002927.3 3069488 3069865 D ortholog of Bordetella pertussis (BX470248) BP1289; hypothetical protein 3069488..3069865 Bordetella bronchiseptica RB50 2660741 NP_889436.1 CDS BB2900 NC_002927.3 3069862 3070746 D ortholog of Bordetella pertussis (BX470248) BP1288+BP1269; hypothetical protein 3069862..3070746 Bordetella bronchiseptica RB50 2660742 NP_889437.1 CDS BB2901 NC_002927.3 3070759 3071397 R ortholog of Bordetella pertussis (BX470248) BP1270; glutathione S-transferase complement(3070759..3071397) Bordetella bronchiseptica RB50 2660601 NP_889438.1 CDS BB2902 NC_002927.3 3071394 3072566 R ortholog of Bordetella pertussis (BX470248) BP1271; hypothetical protein complement(3071394..3072566) Bordetella bronchiseptica RB50 2660602 NP_889439.1 CDS gst NC_002927.3 3072691 3073305 D glutathione S-transferase 3072691..3073305 Bordetella bronchiseptica RB50 2660451 NP_889440.1 CDS BB2904 NC_002927.3 3073422 3074165 D ortholog of Bordetella pertussis (BX470248) BP1272; aspartate racemase 3073422..3074165 Bordetella bronchiseptica RB50 2661609 NP_889441.1 CDS livF NC_002927.3 3074283 3074984 R ortholog of Bordetella pertussis (BX470248) BP1273; high-affinity branched-chain amino acid transport ATP-binding protein complement(3074283..3074984) Bordetella bronchiseptica RB50 2661603 NP_889442.1 CDS livG NC_002927.3 3074985 3075752 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding protein complement(3074985..3075752) Bordetella bronchiseptica RB50 2661550 NP_889443.1 CDS livM NC_002927.3 3075749 3076987 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit complement(3075749..3076987) Bordetella bronchiseptica RB50 2661506 NP_889444.1 CDS livH NC_002927.3 3076987 3077913 R ortholog of Bordetella pertussis (BX470248) BP1276; high-affinity branched-chain amino acid transport system permease complement(3076987..3077913) Bordetella bronchiseptica RB50 2663405 NP_889445.1 CDS livJ NC_002927.3 3078016 3079131 R ortholog of Bordetella pertussis (BX470248) BP1277; leu/Ile/val-binding protein precursor complement(3078016..3079131) Bordetella bronchiseptica RB50 2663889 NP_889446.1 CDS BB2910 NC_002927.3 3079402 3079983 R ortholog of Bordetella pertussis (BX470248) BP1279; hypothetical protein complement(3079402..3079983) Bordetella bronchiseptica RB50 2660089 NP_889447.1 CDS proC NC_002927.3 3079980 3080813 R ortholog of Bordetella pertussis (BX470248) BP1280; pyrroline-5-carboxylate reductase complement(3079980..3080813) Bordetella bronchiseptica RB50 2663932 NP_889448.1 CDS ugpB NC_002927.3 3081024 3082337 D ortholog of Bordetella pertussis (BX470248) BP1281; glycerol-3-phosphate ABC transporter substrate-binding protein 3081024..3082337 Bordetella bronchiseptica RB50 2663933 NP_889449.1 CDS ugpA NC_002927.3 3082514 3083395 D ortholog of Bordetella pertussis (BX470248) BP1282; sn-glycerol-3-phosphate ABC transporter permease 3082514..3083395 Bordetella bronchiseptica RB50 2659354 NP_889450.1 CDS ugpE NC_002927.3 3083415 3084266 D ortholog of Bordetella pertussis (BX470248) BP1283; sn-glycerol-3-phosphate ABC transporter permease 3083415..3084266 Bordetella bronchiseptica RB50 2661957 NP_889451.1 CDS ugpC NC_002927.3 3084319 3085407 D part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding protein 3084319..3085407 Bordetella bronchiseptica RB50 2661948 NP_889452.1 CDS livJ NC_002927.3 3085563 3086690 R ortholog of Bordetella pertussis (BX470248) BP1285; leu/Ile/val-binding protein precursor complement(3085563..3086690) Bordetella bronchiseptica RB50 2663902 NP_889453.1 CDS BB2917 NC_002927.3 3086925 3087536 D ortholog of Bordetella pertussis (BX470248) BP1286; hypothetical protein 3086925..3087536 Bordetella bronchiseptica RB50 2663903 NP_889454.1 CDS wcbR NC_002927.3 3088087 3095670 D type I polyketide synthase 3088087..3095670 Bordetella bronchiseptica RB50 2663912 NP_889455.1 CDS wcbT NC_002927.3 3095667 3097019 D polyketide synthase 3095667..3097019 Bordetella bronchiseptica RB50 2659156 NP_889456.1 CDS wcbQ NC_002927.3 3097016 3098572 R ortholog of Bordetella pertussis (BX470248) BP1654; capsular polysaccharide biosynthesis protein complement(3097016..3098572) Bordetella bronchiseptica RB50 2659157 NP_889457.1 CDS wcbP NC_002927.3 3098565 3099338 R ortholog of Bordetella pertussis (BX470248) BP1655; oxidoreductase complement(3098565..3099338) Bordetella bronchiseptica RB50 2661329 NP_889458.1 CDS wcbO NC_002927.3 3099335 3100555 R ortholog of Bordetella pertussis (BX470248) BP1632; capsular polysaccharide export protein complement(3099335..3100555) Bordetella bronchiseptica RB50 2661500 NP_889459.1 CDS wcbA NC_002927.3 3100569 3102626 R ortholog of Bordetella pertussis (BX470248) BP1631; capsular polysaccharide export protein complement(3100569..3102626) Bordetella bronchiseptica RB50 2661501 NP_889460.1 CDS wbpP NC_002927.3 3102623 3103648 R ortholog of Bordetella pertussis (BX470248) BP1630; capsular polysaccharide biosynthesis protein complement(3102623..3103648) Bordetella bronchiseptica RB50 2659688 NP_889461.1 CDS wbpO NC_002927.3 3103662 3104951 R ortholog of Bordetella pertussis (BX470248) BP1629; capsular polysaccharide biosynthesis protein complement(3103662..3104951) Bordetella bronchiseptica RB50 2659689 NP_889462.1 CDS wza NC_002927.3 3104974 3106071 R ortholog of Bordetella pertussis (BX470248) BP1628; capsular polysaccharide export protein complement(3104974..3106071) Bordetella bronchiseptica RB50 2662620 NP_889463.1 CDS vipC NC_002927.3 3106068 3106958 R ortholog of Bordetella pertussis (BX470248) BP1627; capsular polysaccharide biosynthesis protein complement(3106068..3106958) Bordetella bronchiseptica RB50 2660288 NP_889464.1 CDS wbpT NC_002927.3 3106955 3109039 R ortholog of Bordetella pertussis (BX470248) BP1626; capsular polysaccharide biosynthesis protein complement(3106955..3109039) Bordetella bronchiseptica RB50 2660289 NP_889465.1 CDS wcbD NC_002927.3 3109071 3110240 R ortholog of Bordetella pertussis (BX470248) BP1625; capsule polysaccharide export inner-membrane protein complement(3109071..3110240) Bordetella bronchiseptica RB50 2660290 NP_889466.1 CDS kpsT NC_002927.3 3110282 3111019 R ortholog of Bordetella pertussis (BX470248) BP1624; polysialic acid transport ATP-binding protein complement(3110282..3111019) Bordetella bronchiseptica RB50 2660933 NP_889467.1 CDS kpsM NC_002927.3 3111016 3111786 R ortholog of Bordetella pertussis (BX470248) BP1623; polysialic acid transport protein complement(3111016..3111786) Bordetella bronchiseptica RB50 2660904 NP_889468.1 CDS BB2932 NC_002927.3 3112111 3113424 D ortholog of Bordetella pertussis (BX470248) BP1620; glycosyl transferase 3112111..3113424 Bordetella bronchiseptica RB50 2660854 NP_889469.1 CDS BB2933 NC_002927.3 3113451 3115535 D ortholog of Bordetella pertussis (BX470248) BP1619; hypothetical protein 3113451..3115535 Bordetella bronchiseptica RB50 2660836 NP_889470.1 CDS tviD NC_002927.3 3115673 3117841 D ortholog of Bordetella pertussis (BX470248) BP1618+BP1617; capsular polysaccharide biosynthesis protein 3115673..3117841 Bordetella bronchiseptica RB50 2660532 NP_889471.1 CDS dps NC_002927.3 3117980 3118480 R ortholog of Bordetella pertussis (BX470248) BP1616; DNA-binding protein complement(3117980..3118480) Bordetella bronchiseptica RB50 2660533 NP_889472.1 CDS BB2936 NC_002927.3 3118579 3120093 R ortholog of Bordetella pertussis (BX470248) BP1615; aldehyde dehydrogenase complement(3118579..3120093) Bordetella bronchiseptica RB50 2659588 NP_889473.1 CDS BB2937 NC_002927.3 3120231 3121118 D ortholog of Bordetella pertussis (BX470248) BP1614; LysR family transcriptional regulator 3120231..3121118 Bordetella bronchiseptica RB50 2659468 NP_889474.1 CDS BB2938 NC_002927.3 3121133 3122086 R ortholog of Bordetella pertussis (BX470248) BP1613; LysR family transcriptional regulator complement(3121133..3122086) Bordetella bronchiseptica RB50 2659412 NP_889475.1 CDS recG NC_002927.3 3122138 3124129 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(3122138..3124129) Bordetella bronchiseptica RB50 2661555 NP_889476.1 CDS BB2940 NC_002927.3 3124244 3124630 R ortholog of Bordetella pertussis (BX470248) BP1611; translational inhibitor complement(3124244..3124630) Bordetella bronchiseptica RB50 2661386 NP_889477.1 CDS BB2941 NC_002927.3 3124807 3127620 R ortholog of Bordetella pertussis (BX470248) BP1610; autotransporter complement(3124807..3127620) Bordetella bronchiseptica RB50 2661387 NP_889478.1 CDS dkgB NC_002927.3 3127784 3128587 R catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B complement(3127784..3128587) Bordetella bronchiseptica RB50 2659910 NP_889479.1 CDS BB2943 NC_002927.3 3128659 3129822 R ortholog of Bordetella pertussis (BX470248) BP1608; hypothetical protein complement(3128659..3129822) Bordetella bronchiseptica RB50 2659844 NP_889480.1 CDS BB2944 NC_002927.3 3129924 3130826 D ortholog of Bordetella pertussis (BX470248) BP1607; LysR family transcriptional regulator 3129924..3130826 Bordetella bronchiseptica RB50 2661654 NP_889481.1 CDS fpr NC_002927.3 3130891 3131667 R ortholog of Bordetella pertussis (BX470248) BP1606; ferredoxin--NADP reductase complement(3130891..3131667) Bordetella bronchiseptica RB50 2662868 NP_889482.1 CDS BB2946 NC_002927.3 3131989 3133038 D ortholog of Bordetella pertussis (BX470248) BP1605; iron binding protein 3131989..3133038 Bordetella bronchiseptica RB50 2662909 NP_889483.1 CDS BB2947 NC_002927.3 3133162 3134832 D ortholog of Bordetella pertussis (BX470248) BP1604; inner membrane component of binding-protein-dependent transport system 3133162..3134832 Bordetella bronchiseptica RB50 2662910 NP_889484.1 CDS BB2948 NC_002927.3 3134837 3135613 D ortholog of Bordetella pertussis (BX470248) BP1603; ABC transporter ATP-binding protein 3134837..3135613 Bordetella bronchiseptica RB50 2662680 NP_889485.1 CDS BB2949 NC_002927.3 3135633 3136538 R ortholog of Bordetella pertussis (BX470248) BP1601; hypothetical protein complement(3135633..3136538) Bordetella bronchiseptica RB50 2661686 NP_889486.1 CDS BB2950 NC_002927.3 3136616 3137314 R ortholog of Bordetella pertussis (BX470248) BP1600; hypothetical protein complement(3136616..3137314) Bordetella bronchiseptica RB50 2661687 NP_889487.1 CDS BB2951 NC_002927.3 3137474 3138418 D ortholog of Bordetella pertussis (BX470248) BP1599; LysR family transcriptional regulator 3137474..3138418 Bordetella bronchiseptica RB50 2662544 NP_889488.1 CDS glnG NC_002927.3 3138428 3139918 R ortholog of Bordetella pertussis (BX470248) BP1598; nitrogen regulation protein NR(I) complement(3138428..3139918) Bordetella bronchiseptica RB50 2662273 NP_889489.1 CDS glnL NC_002927.3 3139915 3140982 R ortholog of Bordetella pertussis (BX470248) BP1597; nitrogen regulation protein NR(II) complement(3139915..3140982) Bordetella bronchiseptica RB50 2660204 NP_889490.1 CDS glnA NC_002927.3 3141046 3142458 R ortholog of Bordetella pertussis (BX470248) BP1596; glutamine synthetase complement(3141046..3142458) Bordetella bronchiseptica RB50 2661637 NP_889491.1 CDS BB2955 NC_002927.3 3142644 3143864 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(3142644..3143864) Bordetella bronchiseptica RB50 2661934 NP_889492.1 CDS BB2956 NC_002927.3 3143886 3144536 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(3143886..3144536) Bordetella bronchiseptica RB50 2658991 NP_889493.1 CDS BB2957 NC_002927.3 3144654 3146456 D ortholog of Bordetella pertussis (BX470248) BP1592; hypothetical protein 3144654..3146456 Bordetella bronchiseptica RB50 2661201 NP_889494.1 CDS BB2958 NC_002927.3 3146334 3148073 R ortholog of Bordetella pertussis (BX470248) BP1591; methyl-accepting chemotaxis protein complement(3146334..3148073) Bordetella bronchiseptica RB50 2659226 NP_889495.1 CDS BB2959 NC_002927.3 3148108 3149013 R ortholog of Bordetella pertussis (BX470248) BP1590; transcriptional regulator complement(3148108..3149013) Bordetella bronchiseptica RB50 2659116 NP_889496.1 CDS BB2960 NC_002927.3 3149196 3150572 D ortholog of Bordetella pertussis (BX470248) BP1589; hypothetical protein 3149196..3150572 Bordetella bronchiseptica RB50 2660953 NP_889497.1 CDS rph NC_002927.3 3150780 3151520 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(3150780..3151520) Bordetella bronchiseptica RB50 2660896 NP_889498.1 CDS BB2962 NC_002927.3 3151657 3152583 D ortholog of Bordetella pertussis (BX470248) BP1587; hypothetical protein 3151657..3152583 Bordetella bronchiseptica RB50 2660876 NP_889499.1 CDS BB2963 NC_002927.3 3152854 3153009 D ortholog of Bordetella pertussis (BX470248) BP1586; hypothetical protein 3152854..3153009 Bordetella bronchiseptica RB50 2660877 NP_889500.1 CDS BB2964 NC_002927.3 3153022 3153150 D ortholog of Bordetella pertussis (BX470248) BP1585; hypothetical protein 3153022..3153150 Bordetella bronchiseptica RB50 2660508 NP_889501.1 CDS BB2965 NC_002927.3 3153147 3153431 D ortholog of Bordetella pertussis (BX470248) BP1584; DNA-binding protein 3153147..3153431 Bordetella bronchiseptica RB50 2660509 NP_889502.1 CDS amn NC_002927.3 3153490 3154980 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(3153490..3154980) Bordetella bronchiseptica RB50 2660510 NP_889503.1 CDS BB2967 NC_002927.3 3155225 3155824 D ortholog of Bordetella pertussis (BX470248) BP1582; hypothetical protein 3155225..3155824 Bordetella bronchiseptica RB50 2660443 NP_889504.1 CDS BB2968 NC_002927.3 3155829 3156599 R ortholog of Bordetella pertussis (BX470248) BP1581; oxidoreductase complement(3155829..3156599) Bordetella bronchiseptica RB50 2659416 NP_889505.1 CDS BB2969 NC_002927.3 3156837 3157550 D ortholog of Bordetella pertussis (BX470248) BP1580; cytochrome C 3156837..3157550 Bordetella bronchiseptica RB50 2661481 NP_889506.1 CDS BB2970 NC_002927.3 3157547 3158464 D ortholog of Bordetella pertussis (BX470248) BP1579; cytochrome C 3157547..3158464 Bordetella bronchiseptica RB50 2659852 NP_889507.1 CDS gmk NC_002927.3 3158585 3159232 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3158585..3159232 Bordetella bronchiseptica RB50 2659931 NP_889508.1 CDS rpoZ NC_002927.3 3159274 3159477 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3159274..3159477 Bordetella bronchiseptica RB50 2659816 NP_889509.1 CDS spoT NC_002927.3 3159502 3161781 D ortholog of Bordetella pertussis (BX470248) BP1576; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 3159502..3161781 Bordetella bronchiseptica RB50 2659817 NP_889510.1 CDS glnQ NC_002927.3 3161794 3162522 R similar to ATP-binding protein of ABC transporters; glutamine ABC transporter ATP-binding protein complement(3161794..3162522) Bordetella bronchiseptica RB50 2660920 NP_889511.1 CDS glnP NC_002927.3 3162519 3163178 R similar to permease of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease complement(3162519..3163178) Bordetella bronchiseptica RB50 2663166 NP_889512.1 CDS glnH NC_002927.3 3163247 3163999 R similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter substrate-binding protein complement(3163247..3163999) Bordetella bronchiseptica RB50 2660866 NP_889513.1 CDS BB2977 NC_002927.3 3164187 3165218 D ortholog of Bordetella pertussis (BX470248) BP1896; hypothetical protein 3164187..3165218 Bordetella bronchiseptica RB50 2659122 NP_889514.1 CDS oplaH NC_002927.3 3165232 3168855 R ortholog of Bordetella pertussis (BX470248) BP1895; 5-oxoprolinase complement(3165232..3168855) Bordetella bronchiseptica RB50 2659123 NP_889515.1 CDS BB2979 NC_002927.3 3168934 3169446 R ortholog of Bordetella pertussis (BX470248) BP1894; hypothetical protein complement(3168934..3169446) Bordetella bronchiseptica RB50 2659164 NP_889516.1 CDS BB2980 NC_002927.3 3169590 3170522 D ortholog of Bordetella pertussis (BX470248) BP1893; LysR family transcriptional regulator 3169590..3170522 Bordetella bronchiseptica RB50 2662136 NP_889517.1 CDS BB2981 NC_002927.3 3170687 3171391 D ortholog of Bordetella pertussis (BX470248) BP1892; hypothetical protein 3170687..3171391 Bordetella bronchiseptica RB50 2659617 NP_889518.1 CDS BB2982 NC_002927.3 3171412 3172377 D ortholog of Bordetella pertussis (BX470248) BP1891; hypothetical protein 3171412..3172377 Bordetella bronchiseptica RB50 2659734 NP_889519.1 CDS BB2983 NC_002927.3 3172391 3172882 D ortholog of Bordetella pertussis (BX470248) BP1890; hypothetical protein 3172391..3172882 Bordetella bronchiseptica RB50 2659735 NP_889520.1 CDS BB2984 NC_002927.3 3172875 3174173 D ortholog of Bordetella pertussis (BX470248) BP1888; hypothetical protein 3172875..3174173 Bordetella bronchiseptica RB50 2662161 NP_889521.1 CDS BB2985 NC_002927.3 3174326 3175411 D ortholog of Bordetella pertussis (BX470248) BP1887; hypothetical protein 3174326..3175411 Bordetella bronchiseptica RB50 2659769 NP_889522.1 CDS BB2986 NC_002927.3 3175418 3175918 D ortholog of Bordetella pertussis (BX470248) BP1886; hypothetical protein 3175418..3175918 Bordetella bronchiseptica RB50 2659770 NP_889523.1 CDS BB2987 NC_002927.3 3175911 3177212 D ortholog of Bordetella pertussis (BX470248) BP1885; hypothetical protein 3175911..3177212 Bordetella bronchiseptica RB50 2662198 NP_889524.1 CDS fhaC NC_002927.3 3177238 3178989 R ortholog of Bordetella pertussis (BX470248) BP1884; hemolysin activator-like protein complement(3177238..3178989) Bordetella bronchiseptica RB50 2659930 NP_889525.1 CDS fimD NC_002927.3 3178982 3180079 R ortholog of Bordetella pertussis (BX470248) BP1883; fimbrial adhesin complement(3178982..3180079) Bordetella bronchiseptica RB50 2659962 NP_889526.1 CDS fimC NC_002927.3 3180093 3182714 R ortholog of Bordetella pertussis (BX470248) BP1882; outer membrane usher protein precursor complement(3180093..3182714) Bordetella bronchiseptica RB50 2659981 NP_889527.1 CDS fimB NC_002927.3 3182777 3183601 R ortholog of Bordetella pertussis (BX470248) BP1881; chaperone protein complement(3182777..3183601) Bordetella bronchiseptica RB50 2661390 NP_889528.1 CDS fimA NC_002927.3 3183761 3184366 R ortholog of Bordetella pertussis (BX470248) BP1880; fimbrial protein complement(3183761..3184366) Bordetella bronchiseptica RB50 2660378 NP_889529.1 CDS fhaB NC_002927.3 3184702 3195660 R ortholog of Bordetella pertussis (BX470248) BP1879; filamentous hemagglutinin/adhesin complement(3184702..3195660) Bordetella bronchiseptica RB50 2660379 NP_889530.1 CDS bvgA NC_002927.3 3196207 3196890 D ortholog of Bordetella pertussis (BX470248) BP1878; virulence factors transcription regulator 3196207..3196890 Bordetella bronchiseptica RB50 2659034 NP_889531.1 CDS bvgS NC_002927.3 3196899 3200615 D ortholog of Bordetella pertussis (BX470248) BP1877; virulence sensor protein 3196899..3200615 Bordetella bronchiseptica RB50 2659742 NP_889532.1 CDS bvgR NC_002927.3 3200662 3201537 R ortholog of Bordetella pertussis (BX470248) BP1876; regulatory protein BvgR complement(3200662..3201537) Bordetella bronchiseptica RB50 2659976 NP_889533.1 CDS BB2997 NC_002927.3 3201671 3202504 R ortholog of Bordetella pertussis (BX470248) BP1875; hypothetical protein complement(3201671..3202504) Bordetella bronchiseptica RB50 2661426 NP_889534.1 CDS BB2998 NC_002927.3 3202523 3203872 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(3202523..3203872) Bordetella bronchiseptica RB50 2661427 NP_889535.1 CDS BB2999 NC_002927.3 3203933 3204652 R ortholog of Bordetella pertussis (BX470248) BP1871; hypothetical protein complement(3203933..3204652) Bordetella bronchiseptica RB50 2661478 NP_889536.1 CDS BB3000 NC_002927.3 3204675 3205958 R ortholog of Bordetella pertussis (BX470248) BP1870; hypothetical protein complement(3204675..3205958) Bordetella bronchiseptica RB50 2661479 NP_889537.1 CDS BB3001 NC_002927.3 3205955 3206575 R hypothetical protein complement(3205955..3206575) Bordetella bronchiseptica RB50 2660941 NP_889538.1 CDS BB3002 NC_002927.3 3206685 3207734 R transport protein complement(3206685..3207734) Bordetella bronchiseptica RB50 2660942 NP_889539.1 CDS BB3003 NC_002927.3 3208077 3208985 R LysR family transcriptional regulator complement(3208077..3208985) Bordetella bronchiseptica RB50 2660390 NP_889540.1 CDS BB3004 NC_002927.3 3209089 3210051 D integral membrane protein 3209089..3210051 Bordetella bronchiseptica RB50 2661056 NP_889541.1 CDS BB3005 NC_002927.3 3210055 3210768 R ortholog of Bordetella pertussis (BX470248) BP1734; ABC transporter ATP-binding protein complement(3210055..3210768) Bordetella bronchiseptica RB50 2659261 NP_889542.1 CDS tesA NC_002927.3 3210845 3211393 D ortholog of Bordetella pertussis (BX470248) BP1733; acyl-CoA thioesterase 3210845..3211393 Bordetella bronchiseptica RB50 2661037 NP_889543.1 CDS ppiD NC_002927.3 3211375 3213390 R ortholog of Bordetella pertussis (BX470248) BP1732; peptidyl-prolyl cis-trans isomerase D complement(3211375..3213390) Bordetella bronchiseptica RB50 2659221 NP_889544.1 CDS ugpQ NC_002927.3 3213573 3214322 D hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase 3213573..3214322 Bordetella bronchiseptica RB50 2661053 NP_889545.1 CDS BB3009 NC_002927.3 3214335 3215198 D ortholog of Bordetella pertussis (BX470248) BP1730; hypothetical protein 3214335..3215198 Bordetella bronchiseptica RB50 2663773 NP_889546.1 CDS BB3010 NC_002927.3 3215202 3216617 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(3215202..3216617) Bordetella bronchiseptica RB50 2663774 NP_889547.1 CDS BB3011 NC_002927.3 3216751 3217479 R ortholog of Bordetella pertussis (BX470248) BP1728; glutaredoxin complement(3216751..3217479) Bordetella bronchiseptica RB50 2663879 NP_889548.1 CDS BB3012 NC_002927.3 3217618 3217818 R ortholog of Bordetella pertussis (BX470248) BP1727; hypothetical protein complement(3217618..3217818) Bordetella bronchiseptica RB50 2662642 NP_889549.1 CDS BB3013 NC_002927.3 3217994 3218392 D ortholog of Bordetella pertussis (BX470248) BP1726; MerR family transcriptional regulator 3217994..3218392 Bordetella bronchiseptica RB50 2662657 NP_889550.1 CDS rumA NC_002927.3 3218416 3219816 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(3218416..3219816) Bordetella bronchiseptica RB50 2661895 NP_889551.1 CDS BB3015 NC_002927.3 3219935 3220684 R ortholog of Bordetella pertussis (BX470248) BP1724; hypothetical protein complement(3219935..3220684) Bordetella bronchiseptica RB50 2662165 NP_889552.1 CDS BB3016 NC_002927.3 3220973 3221650 R ortholog of Bordetella pertussis (BX470248) BP1723; hypothetical protein complement(3220973..3221650) Bordetella bronchiseptica RB50 2662166 NP_889553.1 CDS BB3017 NC_002927.3 3221677 3222456 R ortholog of Bordetella pertussis (BX470248) BP1722; hypothetical protein complement(3221677..3222456) Bordetella bronchiseptica RB50 2661281 NP_889554.1 CDS BB3018 NC_002927.3 3222453 3223331 R ortholog of Bordetella pertussis (BX470248) BP1721; peptidase complement(3222453..3223331) Bordetella bronchiseptica RB50 2661282 NP_889555.1 CDS pcm NC_002927.3 3223349 3224038 R ortholog of Bordetella pertussis (BX470248) BP1720; protein-L-isoaspartate O-methyltransferase complement(3223349..3224038) Bordetella bronchiseptica RB50 2659223 NP_889556.1 CDS surE NC_002927.3 3224113 3224871 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(3224113..3224871) Bordetella bronchiseptica RB50 2660385 NP_889557.1 CDS BB3021 NC_002927.3 3224997 3225644 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3224997..3225644 Bordetella bronchiseptica RB50 2660386 NP_889558.1 CDS gcp NC_002927.3 3225689 3226729 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(3225689..3226729) Bordetella bronchiseptica RB50 2660721 NP_889559.1 CDS BB3023 NC_002927.3 3226864 3228156 D ortholog of Bordetella pertussis (BX470248) BP1715; permease 3226864..3228156 Bordetella bronchiseptica RB50 2659599 NP_889560.1 CDS BB3024 NC_002927.3 3228362 3229387 D ortholog of Bordetella pertussis (BX470248) BP1714; hypothetical protein 3228362..3229387 Bordetella bronchiseptica RB50 2661372 NP_889561.1 CDS trxC NC_002927.3 3229523 3229906 D ortholog of Bordetella pertussis (BX470248) BP1713; thioredoxin 2 3229523..3229906 Bordetella bronchiseptica RB50 2660932 NP_889562.1 CDS BB3026 NC_002927.3 3229925 3230512 R ortholog of Bordetella pertussis (BX470248) BP1712; hypothetical protein complement(3229925..3230512) Bordetella bronchiseptica RB50 2659656 NP_889563.1 CDS BB3027 NC_002927.3 3230550 3231407 R ortholog of Bordetella pertussis (BX470248) BP1710; substrate-binding protein complement(3230550..3231407) Bordetella bronchiseptica RB50 2659686 NP_889564.1 CDS BB3028 NC_002927.3 3231435 3232208 R ortholog of Bordetella pertussis (BX470248) BP1709; permease of ABC transporter complement(3231435..3232208) Bordetella bronchiseptica RB50 2659687 NP_889565.1 CDS BB3029 NC_002927.3 3232205 3233203 R ortholog of Bordetella pertussis (BX470248) BP1708; hypothetical protein complement(3232205..3233203) Bordetella bronchiseptica RB50 2663937 NP_889566.1 CDS BB3030 NC_002927.3 3233288 3234064 R ortholog of Bordetella pertussis (BX470248) BP1707; ABC transporter ATP-binding protein complement(3233288..3234064) Bordetella bronchiseptica RB50 2663938 NP_889567.1 CDS BB3031 NC_002927.3 3234219 3235886 R ortholog of Bordetella pertussis (BX470248) BP1706; ABC transporter ATP-binding protein complement(3234219..3235886) Bordetella bronchiseptica RB50 2661936 NP_889568.1 CDS BB3032 NC_002927.3 3236203 3237327 D ortholog of Bordetella pertussis (BX470248) BP1705; hypothetical protein 3236203..3237327 Bordetella bronchiseptica RB50 2660612 NP_889569.1 CDS BB3033 NC_002927.3 3237454 3238077 D ortholog of Bordetella pertussis (BX470248) BP1704; hypothetical protein 3237454..3238077 Bordetella bronchiseptica RB50 2663014 NP_889570.1 CDS BB3034 NC_002927.3 3238074 3239975 D ortholog of Bordetella pertussis (BX470248) BP1703; hypothetical protein 3238074..3239975 Bordetella bronchiseptica RB50 2663291 NP_889571.1 CDS BB3035 NC_002927.3 3240024 3240818 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3240024..3240818 Bordetella bronchiseptica RB50 2663292 NP_889572.1 CDS ldcA NC_002927.3 3240831 3241832 R ortholog of Bordetella pertussis (BX470248) BP1701; muramoyltetrapeptide carboxypeptidase complement(3240831..3241832) Bordetella bronchiseptica RB50 2663413 NP_889573.1 CDS cumB NC_002927.3 3241829 3242335 R ortholog of Bordetella pertussis (BX470248) BP1700; zinc-binding hydrolase complement(3241829..3242335) Bordetella bronchiseptica RB50 2663480 NP_889574.1 CDS BB3038 NC_002927.3 3242328 3243176 R ortholog of Bordetella pertussis (BX470248) BP1699; hypothetical protein complement(3242328..3243176) Bordetella bronchiseptica RB50 2662785 NP_889575.1 CDS BB3039 NC_002927.3 3243274 3243843 R ortholog of Bordetella pertussis (BX470248) BP1698; hypothetical protein complement(3243274..3243843) Bordetella bronchiseptica RB50 2662786 NP_889576.1 CDS phaG NC_002927.3 3243944 3244270 R subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit G complement(3243944..3244270) Bordetella bronchiseptica RB50 2662787 NP_889577.1 CDS phaF NC_002927.3 3244267 3244551 R subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit F complement(3244267..3244551) Bordetella bronchiseptica RB50 2661272 NP_889578.1 CDS phaE NC_002927.3 3244548 3245027 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E complement(3244548..3245027) Bordetella bronchiseptica RB50 2660065 NP_889579.1 CDS phaD NC_002927.3 3245024 3246652 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D complement(3245024..3246652) Bordetella bronchiseptica RB50 2661343 NP_889580.1 CDS phaC NC_002927.3 3246649 3246993 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C complement(3246649..3246993) Bordetella bronchiseptica RB50 2662593 NP_889581.1 CDS phaA NC_002927.3 3246993 3249926 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A complement(3246993..3249926) Bordetella bronchiseptica RB50 2662634 NP_889582.1 CDS BB3046 NC_002927.3 3250349 3251332 D ortholog of Bordetella pertussis (BX470248) BP1690+BP2631; hypothetical protein 3250349..3251332 Bordetella bronchiseptica RB50 2661414 NP_889583.1 CDS BB3047 NC_002927.3 3251380 3254025 R ortholog of Bordetella pertussis (BX470248) BP2632; GTP-binding protein complement(3251380..3254025) Bordetella bronchiseptica RB50 2661539 NP_889584.1 CDS BB3048 NC_002927.3 3254022 3255143 R ortholog of Bordetella pertussis (BX470248) BP2633; exonuclease complement(3254022..3255143) Bordetella bronchiseptica RB50 2659467 NP_889585.1 CDS dadA NC_002927.3 3255220 3256524 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(3255220..3256524) Bordetella bronchiseptica RB50 2661184 NP_889586.1 CDS lrp NC_002927.3 3256660 3257127 D ortholog of Bordetella pertussis (BX470248) BP2635; leucine-responsive regulatory protein 3256660..3257127 Bordetella bronchiseptica RB50 2661185 NP_889587.1 CDS BB3051 NC_002927.3 3257199 3257912 D ortholog of Bordetella pertussis (BX470248) BP2636; hypothetical protein 3257199..3257912 Bordetella bronchiseptica RB50 2662188 NP_889588.1 CDS BB3052 NC_002927.3 3258041 3259186 D ortholog of Bordetella pertussis (BX470248) BP2637; lipoprotein 3258041..3259186 Bordetella bronchiseptica RB50 2661188 NP_889589.1 CDS BB3053 NC_002927.3 3259188 3260918 R ortholog of Bordetella pertussis (BX470248) BP2638; hypothetical protein complement(3259188..3260918) Bordetella bronchiseptica RB50 2661189 NP_889590.1 CDS BB3054 NC_002927.3 3261036 3261344 R ortholog of Bordetella pertussis (BX470248) BP2639; integral membrane protein complement(3261036..3261344) Bordetella bronchiseptica RB50 2662026 NP_889591.1 CDS BB3055 NC_002927.3 3261357 3262169 R ortholog of Bordetella pertussis (BX470248) BP2640; ABC transporter complement(3261357..3262169) Bordetella bronchiseptica RB50 2662113 NP_889592.1 CDS BB3056 NC_002927.3 3262162 3263052 R ortholog of Bordetella pertussis (BX470248) BP2641; ABC transporter complement(3262162..3263052) Bordetella bronchiseptica RB50 2661515 NP_889593.1 CDS BB3057 NC_002927.3 3263049 3264137 R ortholog of Bordetella pertussis (BX470248) BP2642; ABC transporter ATP-binding protein complement(3263049..3264137) Bordetella bronchiseptica RB50 2659906 NP_889594.1 CDS BB3058 NC_002927.3 3264137 3265219 R ortholog of Bordetella pertussis (BX470248) BP2642A; ABC transporter ATP-binding protein complement(3264137..3265219) Bordetella bronchiseptica RB50 2661440 NP_889595.1 CDS glpR NC_002927.3 3265324 3266133 D ortholog of Bordetella pertussis (BX470248) BP2643; glycerol-3-phosphate regulon repressor protein 3265324..3266133 Bordetella bronchiseptica RB50 2661525 NP_889596.1 CDS BB3060 NC_002927.3 3266173 3267777 D ortholog of Bordetella pertussis (BX470248) BP2644; glycerol-3-phosphate dehydrogenase 3266173..3267777 Bordetella bronchiseptica RB50 2659417 NP_889597.1 CDS BB3061 NC_002927.3 3267858 3268598 D ortholog of Bordetella pertussis (BX470248) BP2645; IclR family transcriptional regulator 3267858..3268598 Bordetella bronchiseptica RB50 2659507 NP_889598.1 CDS BB3062 NC_002927.3 3268606 3269475 R ortholog of Bordetella pertussis (BX470248) BP2646; oxidoreductase complement(3268606..3269475) Bordetella bronchiseptica RB50 2660353 NP_889599.1 CDS BB3063 NC_002927.3 3269472 3270491 R ortholog of Bordetella pertussis (BX470248) BP2647; hypothetical protein complement(3269472..3270491) Bordetella bronchiseptica RB50 2659262 NP_889600.1 CDS BB3064 NC_002927.3 3270488 3271870 R ortholog of Bordetella pertussis (BX470248) BP2648; hypothetical protein complement(3270488..3271870) Bordetella bronchiseptica RB50 2659263 NP_889601.1 CDS BB3065 NC_002927.3 3271903 3272763 R ortholog of Bordetella pertussis (BX470248) BP2649; hypothetical protein complement(3271903..3272763) Bordetella bronchiseptica RB50 2659264 NP_889602.1 CDS BB3066 NC_002927.3 3273013 3273705 R ortholog of Bordetella pertussis (BX470248) BP2650; hypothetical protein complement(3273013..3273705) Bordetella bronchiseptica RB50 2662816 NP_889603.1 CDS BB3067 NC_002927.3 3273787 3274668 D ortholog of Bordetella pertussis (BX470248) BP2651; hypothetical protein 3273787..3274668 Bordetella bronchiseptica RB50 2662817 NP_889604.1 CDS BB3068 NC_002927.3 3274727 3275164 D ortholog of Bordetella pertussis (BX470248) BP2652; hypothetical protein 3274727..3275164 Bordetella bronchiseptica RB50 2662844 NP_889605.1 CDS BB3069 NC_002927.3 3275255 3276226 R ortholog of Bordetella pertussis (BX470248) BP2653; hypothetical protein complement(3275255..3276226) Bordetella bronchiseptica RB50 2662845 NP_889606.1 CDS BB3070 NC_002927.3 3276265 3277209 R ortholog of Bordetella pertussis (BX470248) BP2654; dihydrodipicolinate synthase complement(3276265..3277209) Bordetella bronchiseptica RB50 2662884 NP_889607.1 CDS BB3071 NC_002927.3 3277428 3278114 D ortholog of Bordetella pertussis (BX470248) BP2655; IclR family transcriptional regulator 3277428..3278114 Bordetella bronchiseptica RB50 2662895 NP_889608.1 CDS BB3072 NC_002927.3 3278294 3278689 R ortholog of Bordetella pertussis (BX470248) BP2656; hypothetical protein complement(3278294..3278689) Bordetella bronchiseptica RB50 2662896 NP_889609.1 CDS BB3073 NC_002927.3 3278775 3279467 R ortholog of Bordetella pertussis (BX470248) BP2657; integral membrane protein complement(3278775..3279467) Bordetella bronchiseptica RB50 2662935 NP_889610.1 CDS BB3074 NC_002927.3 3279460 3279876 R ortholog of Bordetella pertussis (BX470248) BP2658; peptidyl-tRNA hydrolase domain-containing protein complement(3279460..3279876) Bordetella bronchiseptica RB50 2662970 NP_889611.1 CDS BB3075 NC_002927.3 3279987 3280619 D ortholog of Bordetella pertussis (BX470248) BP2659; hypothetical protein 3279987..3280619 Bordetella bronchiseptica RB50 2663038 NP_889612.1 CDS BB3076 NC_002927.3 3280648 3281091 D ortholog of Bordetella pertussis (BX470248) BP2660; hypothetical protein 3280648..3281091 Bordetella bronchiseptica RB50 2663039 NP_889613.1 CDS BB3077 NC_002927.3 3281113 3282204 R ortholog of Bordetella pertussis (BX470248) BP2661; hypothetical protein complement(3281113..3282204) Bordetella bronchiseptica RB50 2663040 NP_889614.1 CDS BB3078 NC_002927.3 3282259 3283050 R ortholog of Bordetella pertussis (BX470248) BP2662; class II aldolase/adducin domain-containing protein complement(3282259..3283050) Bordetella bronchiseptica RB50 2663052 NP_889615.1 CDS BB3079 NC_002927.3 3283195 3283815 D ortholog of Bordetella pertussis (BX470248) BP2663; transcriptional regulatory protein 3283195..3283815 Bordetella bronchiseptica RB50 2663072 NP_889616.1 CDS BB3080 NC_002927.3 3284064 3284537 D ortholog of Bordetella pertussis (BX470248) BP2664; MarR family transcriptional regulator 3284064..3284537 Bordetella bronchiseptica RB50 2663127 NP_889617.1 CDS BB3081 NC_002927.3 3284534 3286579 D ortholog of Bordetella pertussis (BX470248) BP2665; hypothetical protein 3284534..3286579 Bordetella bronchiseptica RB50 2663137 NP_889618.1 CDS BB3082 NC_002927.3 3286576 3286788 D hypothetical protein 3286576..3286788 Bordetella bronchiseptica RB50 2663138 NP_889619.1 CDS BB3083 NC_002927.3 3286793 3287686 D hemolysin D 3286793..3287686 Bordetella bronchiseptica RB50 2663223 NP_889620.1 CDS BB3084 NC_002927.3 3287714 3289135 D outer membrane efflux protein 3287714..3289135 Bordetella bronchiseptica RB50 2663219 NP_889621.1 CDS BB3085 NC_002927.3 3289142 3289846 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YpfH complement(3289142..3289846) Bordetella bronchiseptica RB50 2663260 NP_889622.1 CDS BB3086 NC_002927.3 3289957 3290664 D hypothetical protein 3289957..3290664 Bordetella bronchiseptica RB50 2663261 NP_889623.1 CDS BB3087 NC_002927.3 3290681 3292066 D hypothetical protein 3290681..3292066 Bordetella bronchiseptica RB50 2663262 NP_889624.1 CDS dnaE2 NC_002927.3 3292075 3295233 D DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 3292075..3295233 Bordetella bronchiseptica RB50 2663274 NP_889625.1 CDS BB3089 NC_002927.3 3295299 3296588 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(3295299..3296588) Bordetella bronchiseptica RB50 2663287 NP_889626.1 CDS BB3090 NC_002927.3 3296707 3297177 R ortholog of Bordetella pertussis (BX470248) BP2211; DNA-binding protein complement(3296707..3297177) Bordetella bronchiseptica RB50 2663308 NP_889627.1 CDS fhp NC_002927.3 3297188 3298396 R flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase complement(3297188..3298396) Bordetella bronchiseptica RB50 2663316 NP_889628.1 CDS BB3092 NC_002927.3 3298543 3299007 D ortholog of Bordetella pertussis (BX470248) BP2213; hypothetical protein 3298543..3299007 Bordetella bronchiseptica RB50 2663323 NP_889629.1 CDS dinP NC_002927.3 3299031 3300116 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(3299031..3300116) Bordetella bronchiseptica RB50 2663326 NP_889630.1 CDS BB3094 NC_002927.3 3300214 3300624 D ortholog of Bordetella pertussis (BX470248) BP0908; hypothetical protein 3300214..3300624 Bordetella bronchiseptica RB50 2663327 NP_889631.1 CDS BB3095 NC_002927.3 3300627 3301079 R ortholog of Bordetella pertussis (BX470248) BP0907; lipoprotein complement(3300627..3301079) Bordetella bronchiseptica RB50 2663536 NP_889632.1 CDS BB3096 NC_002927.3 3301239 3303152 D ortholog of Bordetella pertussis (BX470248) BP0906; peptidase 3301239..3303152 Bordetella bronchiseptica RB50 2663561 NP_889633.1 CDS mrcA NC_002927.3 3303288 3305900 D ortholog of Bordetella pertussis (BX470248) BP0905; penicillin-binding protein 1A 3303288..3305900 Bordetella bronchiseptica RB50 2663562 NP_889634.1 CDS pphA NC_002927.3 3305902 3306636 R ortholog of Bordetella pertussis (BX470248) BP0904; serine/threonine protein phosphatase 1 complement(3305902..3306636) Bordetella bronchiseptica RB50 2663575 NP_889635.1 CDS BB3099 NC_002927.3 3306800 3307981 D ortholog of Bordetella pertussis (BX470248) BP0903; hypothetical protein 3306800..3307981 Bordetella bronchiseptica RB50 2663593 NP_889636.1 CDS BB3100 NC_002927.3 3307978 3308190 D ortholog of Bordetella pertussis (BX470248) BP0902; hypothetical protein 3307978..3308190 Bordetella bronchiseptica RB50 2663614 NP_889637.1 CDS BB3101 NC_002927.3 3308187 3309167 R ortholog of Bordetella pertussis (BX470248) BP0901; oxidoreductase complement(3308187..3309167) Bordetella bronchiseptica RB50 2663615 NP_889638.1 CDS BB3102 NC_002927.3 3309213 3310130 R ortholog of Bordetella pertussis (BX470248) BP0900; oxidoreductase complement(3309213..3310130) Bordetella bronchiseptica RB50 2663624 NP_889639.1 CDS BB3103 NC_002927.3 3310238 3312004 D ortholog of Bordetella pertussis (BX470248) BP0899; ABC transporter ATP-binding protein 3310238..3312004 Bordetella bronchiseptica RB50 2663635 NP_889640.1 CDS BB3104 NC_002927.3 3312059 3312442 D ortholog of Bordetella pertussis (BX470248) BP0898; ferredoxin 3312059..3312442 Bordetella bronchiseptica RB50 2663657 NP_889641.1 CDS BB3105 NC_002927.3 3312452 3312703 R ortholog of Bordetella pertussis (BX470248) BP0896; hypothetical protein complement(3312452..3312703) Bordetella bronchiseptica RB50 2663679 NP_889642.1 CDS BB3106 NC_002927.3 3312897 3313112 R ortholog of Bordetella pertussis (BX470248) BP0895; hypothetical protein complement(3312897..3313112) Bordetella bronchiseptica RB50 2663680 NP_889643.1 CDS pmi NC_002927.3 3313209 3314327 R ortholog of Bordetella pertussis (BX470248) BP0894; mannose-6-phosphate isomerase complement(3313209..3314327) Bordetella bronchiseptica RB50 2663681 NP_889644.1 CDS BB3108 NC_002927.3 3314447 3314659 R ortholog of Bordetella pertussis (BX470248) BP0893; hypothetical protein complement(3314447..3314659) Bordetella bronchiseptica RB50 2663689 NP_889645.1 CDS BB3109 NC_002927.3 3314819 3315040 R ortholog of Bordetella pertussis (BX470248) BP0892; hypothetical protein complement(3314819..3315040) Bordetella bronchiseptica RB50 2663690 NP_889646.1 CDS BB3110 NC_002927.3 3315334 3317646 R autotransporter complement(3315334..3317646) Bordetella bronchiseptica RB50 2663691 NP_889647.1 CDS BB3111 NC_002927.3 3317747 3319333 R autotransporter complement(3317747..3319333) Bordetella bronchiseptica RB50 2663729 NP_889648.1 CDS BB3112 NC_002927.3 3320136 3320441 D hypothetical protein 3320136..3320441 Bordetella bronchiseptica RB50 2663730 NP_889649.1 CDS BB3113 NC_002927.3 3320454 3321425 R hypothetical protein complement(3320454..3321425) Bordetella bronchiseptica RB50 2663778 NP_889650.1 CDS BB3114 NC_002927.3 3321493 3322920 R hypothetical protein complement(3321493..3322920) Bordetella bronchiseptica RB50 2663779 NP_889651.1 CDS BB3115 NC_002927.3 3323269 3324927 R methyl-accepting chemotaxis protein complement(3323269..3324927) Bordetella bronchiseptica RB50 2659096 NP_889652.1 CDS BB3116 NC_002927.3 3325087 3326661 R hypothetical protein complement(3325087..3326661) Bordetella bronchiseptica RB50 2661280 NP_889653.1 CDS csaA NC_002927.3 3327048 3327389 D protein secretion chaperone 3327048..3327389 Bordetella bronchiseptica RB50 2661569 NP_889654.1 CDS BB3118 NC_002927.3 3327591 3327869 D hypothetical protein 3327591..3327869 Bordetella bronchiseptica RB50 2661570 NP_889655.1 CDS BB3119 NC_002927.3 3328104 3328547 D hypothetical protein 3328104..3328547 Bordetella bronchiseptica RB50 2661571 NP_889656.1 CDS lysP NC_002927.3 3328703 3330277 D lysine-specific permease 3328703..3330277 Bordetella bronchiseptica RB50 2660444 NP_889657.1 CDS BB3121 NC_002927.3 3330317 3331048 R hypothetical protein complement(3330317..3331048) Bordetella bronchiseptica RB50 2660979 NP_889658.1 CDS BB3122 NC_002927.3 3331301 3331525 D hypothetical protein 3331301..3331525 Bordetella bronchiseptica RB50 2660772 NP_889659.1 CDS BB3123 NC_002927.3 3331547 3332545 R hypothetical protein complement(3331547..3332545) Bordetella bronchiseptica RB50 2660052 NP_889660.1 CDS hmgL NC_002927.3 3332558 3333484 R hydroxymethylglutaryl-CoA lyase complement(3332558..3333484) Bordetella bronchiseptica RB50 2660053 NP_889661.1 CDS BB3125 NC_002927.3 3333489 3334685 R hypothetical protein complement(3333489..3334685) Bordetella bronchiseptica RB50 2659722 NP_889662.1 CDS prpR NC_002927.3 3334857 3336785 D propionate catabolism operon regulatory protein 3334857..3336785 Bordetella bronchiseptica RB50 2659723 NP_889663.1 CDS marC NC_002927.3 3336909 3337610 D protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 3336909..3337610 Bordetella bronchiseptica RB50 2661320 NP_889664.1 CDS BB3128 NC_002927.3 3337799 3339370 R hypothetical protein complement(3337799..3339370) Bordetella bronchiseptica RB50 2661612 NP_889665.1 CDS BB3129 NC_002927.3 3339763 3339897 D hypothetical protein 3339763..3339897 Bordetella bronchiseptica RB50 2661494 NP_889666.1 CDS BB3130 NC_002927.3 3340058 3340270 D hypothetical protein 3340058..3340270 Bordetella bronchiseptica RB50 2659763 NP_889667.1 CDS BB3131 NC_002927.3 3340317 3341480 R acyl-CoA dehydrogenase complement(3340317..3341480) Bordetella bronchiseptica RB50 2659764 NP_889668.1 CDS BB3132 NC_002927.3 3341517 3342686 R hypothetical protein complement(3341517..3342686) Bordetella bronchiseptica RB50 2661418 NP_889669.1 CDS gabD NC_002927.3 3342683 3344116 R succinate-semialdehyde dehydrogenase complement(3342683..3344116) Bordetella bronchiseptica RB50 2660778 NP_889670.1 CDS ilvB NC_002927.3 3344127 3345809 R hypothetical protein complement(3344127..3345809) Bordetella bronchiseptica RB50 2659537 NP_889671.1 CDS BB3135 NC_002927.3 3345822 3346796 R hypothetical protein complement(3345822..3346796) Bordetella bronchiseptica RB50 2659756 NP_889672.1 CDS BB3136 NC_002927.3 3347157 3348122 R ortholog of Bordetella pertussis (BX470248) BP2103; hypothetical protein complement(3347157..3348122) Bordetella bronchiseptica RB50 2659757 NP_889673.1 CDS BB3137 NC_002927.3 3348260 3349165 R ortholog of Bordetella pertussis (BX470248) BP2102; lysR family transcriptional regulator complement(3348260..3349165) Bordetella bronchiseptica RB50 2661237 NP_889674.1 CDS BB3138 NC_002927.3 3349261 3351510 D ortholog of Bordetella pertussis (BX470248) BP2101; hypothetical protein 3349261..3351510 Bordetella bronchiseptica RB50 2663916 NP_889675.1 CDS BB3139 NC_002927.3 3351756 3353240 D ortholog of Bordetella pertussis (BX470248) BP2100; hypothetical protein 3351756..3353240 Bordetella bronchiseptica RB50 2663918 NP_889676.1 CDS BB3140 NC_002927.3 3353251 3354447 D ortholog of Bordetella pertussis (BX470248) BP2099; acetyl-CoA acetyltransferase 3353251..3354447 Bordetella bronchiseptica RB50 2663919 NP_889677.1 CDS BB3141 NC_002927.3 3354520 3355839 D ortholog of Bordetella pertussis (BX470248) BP2098; acyl-CoA ligase 3354520..3355839 Bordetella bronchiseptica RB50 2660279 NP_889678.1 CDS BB3142 NC_002927.3 3355836 3356723 D ortholog of Bordetella pertussis (BX470248) BP2097; esterase 3355836..3356723 Bordetella bronchiseptica RB50 2660280 NP_889679.1 CDS BB3143 NC_002927.3 3356754 3357926 R ortholog of Bordetella pertussis (BX470248) BP2096; fatty-acyl-CoA racemase complement(3356754..3357926) Bordetella bronchiseptica RB50 2661009 NP_889680.1 CDS BB3144 NC_002927.3 3357923 3358237 R ortholog of Bordetella pertussis (BX470248) BP2095; ferredoxin complement(3357923..3358237) Bordetella bronchiseptica RB50 2660125 NP_889681.1 CDS BB3145 NC_002927.3 3358259 3358981 R ortholog of Bordetella pertussis (BX470248) BP2094; 3-oxoacyl-ACP reductase complement(3358259..3358981) Bordetella bronchiseptica RB50 2661085 NP_889682.1 CDS BB3146 NC_002927.3 3358981 3359799 R ortholog of Bordetella pertussis (BX470248) BP2093; enoyl-CoA hydratase-like protein complement(3358981..3359799) Bordetella bronchiseptica RB50 2661416 NP_889683.1 CDS BB3147 NC_002927.3 3359804 3360331 R ortholog of Bordetella pertussis (BX470248) BP2092; dioxygenase complement(3359804..3360331) Bordetella bronchiseptica RB50 2661417 NP_889684.1 CDS BB3148 NC_002927.3 3360337 3361602 R ortholog of Bordetella pertussis (BX470248) BP2091; dioxygenase hydroxylase complement(3360337..3361602) Bordetella bronchiseptica RB50 2661620 NP_889685.1 CDS BB3149 NC_002927.3 3361954 3363093 D ortholog of Bordetella pertussis (BX470248) BP2090; ABC transporter substrate-binding protein 3361954..3363093 Bordetella bronchiseptica RB50 2661124 NP_889686.1 CDS BB3150 NC_002927.3 3363171 3364043 D ortholog of Bordetella pertussis (BX470248) BP2089; ABC transporter permease 3363171..3364043 Bordetella bronchiseptica RB50 2661088 NP_889687.1 CDS BB3151 NC_002927.3 3364047 3365003 D ortholog of Bordetella pertussis (BX470248) BP2088+BP1648; ABC transporter permease 3364047..3365003 Bordetella bronchiseptica RB50 2661057 NP_889688.1 CDS livG NC_002927.3 3365000 3365782 D ortholog of Bordetella pertussis (BX470248) BP1649; high-affinity branched-chain amino acid transport ATP-binding protein 3365000..3365782 Bordetella bronchiseptica RB50 2660740 NP_889689.1 CDS livF NC_002927.3 3365776 3366477 D ortholog of Bordetella pertussis (BX470248) BP1650; high-affinity branched-chain amino acid transport ATP-binding protein 3365776..3366477 Bordetella bronchiseptica RB50 2660799 NP_889690.1 CDS BB3154 NC_002927.3 3366716 3367318 D ortholog of Bordetella pertussis (BX470248) BP1651; TetR family transcriptional regulator 3366716..3367318 Bordetella bronchiseptica RB50 2660825 NP_889691.1 CDS BB3155 NC_002927.3 3367294 3368523 R ortholog of Bordetella pertussis (BX470248) BP1652; oxidoreductase complement(3367294..3368523) Bordetella bronchiseptica RB50 2660826 NP_889692.1 CDS BB3156 NC_002927.3 3368673 3369071 D translational inhibitor 3368673..3369071 Bordetella bronchiseptica RB50 2660891 NP_889693.1 CDS BB3157 NC_002927.3 3369073 3369390 R hypothetical protein complement(3369073..3369390) Bordetella bronchiseptica RB50 2660652 NP_889694.1 CDS BB3158 NC_002927.3 3369624 3370031 R hypothetical protein complement(3369624..3370031) Bordetella bronchiseptica RB50 2660653 NP_889695.1 CDS BB3159 NC_002927.3 3370372 3370749 R ortholog of Bordetella pertussis (BX470248) BP2182; hypothetical protein complement(3370372..3370749) Bordetella bronchiseptica RB50 2660654 NP_889696.1 CDS BB3160 NC_002927.3 3370746 3371048 R hypothetical protein complement(3370746..3371048) Bordetella bronchiseptica RB50 2660655 NP_889697.1 CDS rpoD NC_002927.3 3371278 3373446 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(3371278..3373446) Bordetella bronchiseptica RB50 2661516 NP_889698.1 CDS dnaG NC_002927.3 3374239 3376269 R ortholog of Bordetella pertussis (BX470248) BP2185; DNA primase complement(3374239..3376269) Bordetella bronchiseptica RB50 2660918 NP_889699.2 CDS rpsU NC_002927.3 3376289 3376501 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(3376289..3376501) Bordetella bronchiseptica RB50 2659973 NP_889700.1 CDS BB3164 NC_002927.3 3376779 3377318 R ortholog of Bordetella pertussis (BX470248) BP2187; transferase complement(3376779..3377318) Bordetella bronchiseptica RB50 2660707 NP_889701.1 CDS purA NC_002927.3 3377432 3378739 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3377432..3378739) Bordetella bronchiseptica RB50 2660561 NP_889702.1 CDS hisZ NC_002927.3 3378804 3379961 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(3378804..3379961) Bordetella bronchiseptica RB50 2661588 NP_889703.1 CDS hflC NC_002927.3 3380145 3381044 R ortholog of Bordetella pertussis (BX470248) BP2190; inner membrane-anchored protein complement(3380145..3381044) Bordetella bronchiseptica RB50 2661589 NP_889704.1 CDS hflK NC_002927.3 3381063 3382205 R ortholog of Bordetella pertussis (BX470248) BP2191; hypothetical protein complement(3381063..3382205) Bordetella bronchiseptica RB50 2659927 NP_889705.1 CDS hflX NC_002927.3 3382333 3383370 R ortholog of Bordetella pertussis (BX470248) BP2192; GTP-binding protein complement(3382333..3383370) Bordetella bronchiseptica RB50 2660578 NP_889706.1 CDS hfq NC_002927.3 3383527 3383763 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(3383527..3383763) Bordetella bronchiseptica RB50 2659362 NP_889707.1 CDS hisC NC_002927.3 3383902 3384972 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(3383902..3384972) Bordetella bronchiseptica RB50 2659363 NP_889708.1 CDS engA NC_002927.3 3384976 3386331 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(3384976..3386331) Bordetella bronchiseptica RB50 2658981 NP_889709.1 CDS BB3173 NC_002927.3 3386358 3387518 R ortholog of Bordetella pertussis (BX470248) BP2196; quinoprotein complement(3386358..3387518) Bordetella bronchiseptica RB50 2659086 NP_889710.1 CDS BB3174 NC_002927.3 3387521 3388159 R ortholog of Bordetella pertussis (BX470248) BP2197; hypothetical protein complement(3387521..3388159) Bordetella bronchiseptica RB50 2661594 NP_889711.1 CDS hisS NC_002927.3 3388161 3389447 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(3388161..3389447) Bordetella bronchiseptica RB50 2659506 NP_889712.1 CDS ispG NC_002927.3 3389500 3390801 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(3389500..3390801) Bordetella bronchiseptica RB50 2659792 NP_889713.1 CDS BB3177 NC_002927.3 3390808 3391314 R ortholog of Bordetella pertussis (BX470248) BP2200; hypothetical protein complement(3390808..3391314) Bordetella bronchiseptica RB50 2659793 NP_889714.1 CDS BB3178 NC_002927.3 3391311 3392459 R ortholog of Bordetella pertussis (BX470248) BP2201; hypothetical protein complement(3391311..3392459) Bordetella bronchiseptica RB50 2661269 NP_889715.1 CDS ndk NC_002927.3 3392487 3392912 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(3392487..3392912) Bordetella bronchiseptica RB50 2661270 NP_889716.1 CDS valS NC_002927.3 3393234 3396116 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3393234..3396116 Bordetella bronchiseptica RB50 2660619 NP_889717.1 CDS BB3181 NC_002927.3 3396209 3396964 R ortholog of Bordetella pertussis (BX470248) BP2204; outer membrane (scaffolding) protein complement(3396209..3396964) Bordetella bronchiseptica RB50 2659667 NP_889718.1 CDS BB3182 NC_002927.3 3397094 3397765 D ortholog of Bordetella pertussis (BX470248) BP2205; two-component response regulator 3397094..3397765 Bordetella bronchiseptica RB50 2659668 NP_889719.1 CDS BB3183 NC_002927.3 3397762 3399111 D ortholog of Bordetella pertussis (BX470248) BP2206; two component sensor kinase 3397762..3399111 Bordetella bronchiseptica RB50 2661170 NP_889720.1 CDS BB3184 NC_002927.3 3399153 3399659 D ortholog of Bordetella pertussis (BX470248) BP1843; hypothetical protein 3399153..3399659 Bordetella bronchiseptica RB50 2660579 NP_889721.1 CDS BB3185 NC_002927.3 3399685 3400893 D ortholog of Bordetella pertussis (BX470248) BP1842; class-V aminotransferase 3399685..3400893 Bordetella bronchiseptica RB50 2662641 NP_889722.1 CDS trmD NC_002927.3 3400890 3401663 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(3400890..3401663) Bordetella bronchiseptica RB50 2660022 NP_889723.1 CDS rimM NC_002927.3 3401663 3402286 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(3401663..3402286) Bordetella bronchiseptica RB50 2660023 NP_889724.2 CDS rpsP NC_002927.3 3402452 3402712 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(3402452..3402712) Bordetella bronchiseptica RB50 2660539 NP_889725.1 CDS BB3189 NC_002927.3 3403016 3403597 D ortholog of Bordetella pertussis (BX470248) BP1838; hypothetical protein 3403016..3403597 Bordetella bronchiseptica RB50 2660540 NP_889726.1 CDS BB3190 NC_002927.3 3403666 3403920 R ortholog of Bordetella pertussis (BX470248) BP1837; hypothetical protein complement(3403666..3403920) Bordetella bronchiseptica RB50 2660541 NP_889727.1 CDS alaS NC_002927.3 3403907 3406531 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(3403907..3406531) Bordetella bronchiseptica RB50 2660548 NP_889728.1 CDS BB3192 NC_002927.3 3406603 3407421 R ortholog of Bordetella pertussis (BX470248) BP1835; hypothetical protein complement(3406603..3407421) Bordetella bronchiseptica RB50 2661070 NP_889729.1 CDS BB3193 NC_002927.3 3407418 3408023 R ortholog of Bordetella pertussis (BX470248) BP1834; fimbrial protein complement(3407418..3408023) Bordetella bronchiseptica RB50 2661071 NP_889730.1 CDS BB3194 NC_002927.3 3408061 3409194 R ortholog of Bordetella pertussis (BX470248) BP1833; general secretion pathway protein complement(3408061..3409194) Bordetella bronchiseptica RB50 2659802 NP_889731.1 CDS BB3195 NC_002927.3 3409187 3410902 R ortholog of Bordetella pertussis (BX470248) BP1832; general secretion pathway protein complement(3409187..3410902) Bordetella bronchiseptica RB50 2659803 NP_889732.1 CDS BB3196 NC_002927.3 3410899 3411282 R ortholog of Bordetella pertussis (BX470248) BP1831; hypothetical protein complement(3410899..3411282) Bordetella bronchiseptica RB50 2661382 NP_889733.1 CDS BB3197 NC_002927.3 3411380 3412648 R ortholog of Bordetella pertussis (BX470248) BP1830; hypothetical protein complement(3411380..3412648) Bordetella bronchiseptica RB50 2661383 NP_889734.1 CDS BB3198 NC_002927.3 3412652 3414229 R ortholog of Bordetella pertussis (BX470248) BP1829; lipoprotein complement(3412652..3414229) Bordetella bronchiseptica RB50 2661384 NP_889735.1 CDS BB3199 NC_002927.3 3414226 3414987 R ortholog of Bordetella pertussis (BX470248) BP1828; lipoprotein complement(3414226..3414987) Bordetella bronchiseptica RB50 2661443 NP_889736.1 CDS BB3200 NC_002927.3 3415165 3416520 R ortholog of Bordetella pertussis (BX470248) BP1827; amidase complement(3415165..3416520) Bordetella bronchiseptica RB50 2661468 NP_889737.1 CDS BB3201 NC_002927.3 3416517 3418151 R ortholog of Bordetella pertussis (BX470248) BP1826; ABC transporter ATP-binding protein complement(3416517..3418151) Bordetella bronchiseptica RB50 2661528 NP_889738.1 CDS BB3202 NC_002927.3 3418144 3418974 R ortholog of Bordetella pertussis (BX470248) BP1825; inner membrane component of binding-protein-dependent transport system complement(3418144..3418974) Bordetella bronchiseptica RB50 2659177 NP_889739.1 CDS BB3203 NC_002927.3 3418992 3419936 R ortholog of Bordetella pertussis (BX470248) BP1824; inner membrane component of binding-protein-dependent transport system complement(3418992..3419936) Bordetella bronchiseptica RB50 2659407 NP_889740.1 CDS BB3204 NC_002927.3 3419989 3421563 R ortholog of Bordetella pertussis (BX470248) BP1823; peptide ABC transporter substrate-binding protein complement(3419989..3421563) Bordetella bronchiseptica RB50 2660117 NP_889741.1 CDS BB3205 NC_002927.3 3421611 3421961 R ortholog of Bordetella pertussis (BX470248) BP1822; hypothetical protein complement(3421611..3421961) Bordetella bronchiseptica RB50 2659150 NP_889742.1 CDS BB3206 NC_002927.3 3421963 3423339 R ortholog of Bordetella pertussis (BX470248) BP1821; hypothetical protein complement(3421963..3423339) Bordetella bronchiseptica RB50 2659151 NP_889743.1 CDS BB3207 NC_002927.3 3423436 3424386 D ortholog of Bordetella pertussis (BX470248) BP1820; LysR family transcriptional regulator 3423436..3424386 Bordetella bronchiseptica RB50 2659152 NP_889744.1 CDS ugpB NC_002927.3 3424656 3425993 R ortholog of Bordetella pertussis (BX470248) BP1819; glycerol-3-phosphate ABC transporter substrate-binding protein complement(3424656..3425993) Bordetella bronchiseptica RB50 2659128 NP_889745.1 CDS dadA NC_002927.3 3425998 3427254 R ortholog of Bordetella pertussis (BX470248) BP1818; D-amino acid dehydrogenase small subunit complement(3425998..3427254) Bordetella bronchiseptica RB50 2659129 NP_889746.1 CDS ascD NC_002927.3 3427450 3428496 R catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(3427450..3428496) Bordetella bronchiseptica RB50 2663429 NP_889747.1 CDS panD NC_002927.3 3428554 3428922 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(3428554..3428922) Bordetella bronchiseptica RB50 2661273 NP_889748.1 CDS BB3212 NC_002927.3 3429053 3429925 R ortholog of Bordetella pertussis (BX470248) BP1815; hypothetical protein complement(3429053..3429925) Bordetella bronchiseptica RB50 2661344 NP_889749.1 CDS BB3213 NC_002927.3 3430002 3430904 R ortholog of Bordetella pertussis (BX470248) BP1814; GntR family transcriptional regulator complement(3430002..3430904) Bordetella bronchiseptica RB50 2660788 NP_889750.1 CDS pdxA NC_002927.3 3430909 3431964 R ortholog of Bordetella pertussis (BX470248) BP1813; pyridoxal phosphate biosynthetic protein complement(3430909..3431964) Bordetella bronchiseptica RB50 2660789 NP_889751.1 CDS BB3215 NC_002927.3 3431961 3433178 R ortholog of Bordetella pertussis (BX470248) BP1812; hypothetical protein complement(3431961..3433178) Bordetella bronchiseptica RB50 2659458 NP_889752.1 CDS kdgT NC_002927.3 3433179 3434201 R transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease complement(3433179..3434201) Bordetella bronchiseptica RB50 2659459 NP_889753.1 CDS BB3217 NC_002927.3 3434451 3435377 R L-proline 4-hydroxylase complement(3434451..3435377) Bordetella bronchiseptica RB50 2662598 NP_889754.1 CDS ectC NC_002927.3 3435396 3435791 R N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; L-ectoine synthase complement(3435396..3435791) Bordetella bronchiseptica RB50 2662599 NP_889755.1 CDS ectB NC_002927.3 3435788 3437095 R catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase complement(3435788..3437095) Bordetella bronchiseptica RB50 2662600 NP_889756.1 CDS ectA NC_002927.3 3437206 3437766 R ortholog of Bordetella pertussis (BX470248) BP2215; L-2,4-diaminobutyric acid acetyltransferase complement(3437206..3437766) Bordetella bronchiseptica RB50 2662635 NP_889757.1 CDS BB3221 NC_002927.3 3437763 3438374 R ortholog of Bordetella pertussis (BX470248) BP2216; MarR family transcriptional regulator complement(3437763..3438374) Bordetella bronchiseptica RB50 2661283 NP_889758.1 CDS BB3222 NC_002927.3 3438504 3439538 D ortholog of Bordetella pertussis (BX470248) BP2217; SIS family regulator 3438504..3439538 Bordetella bronchiseptica RB50 2659499 NP_889759.1 CDS BB3223 NC_002927.3 3439579 3440919 D ortholog of Bordetella pertussis (BX470248) BP2218; hypothetical protein 3439579..3440919 Bordetella bronchiseptica RB50 2659500 NP_889760.1 CDS BB3224 NC_002927.3 3441028 3442032 D ortholog of Bordetella pertussis (BX470248) BP2219; cell surface protein 3441028..3442032 Bordetella bronchiseptica RB50 2660531 NP_889761.1 CDS BB3225 NC_002927.3 3442139 3444739 D ortholog of Bordetella pertussis (BX470248) BP2220; inner membrane protein 3442139..3444739 Bordetella bronchiseptica RB50 2660549 NP_889762.1 CDS BB3226 NC_002927.3 3444736 3445947 R ortholog of Bordetella pertussis (BX470248) BP1267; hypothetical protein complement(3444736..3445947) Bordetella bronchiseptica RB50 2660550 NP_889763.1 CDS parC NC_002927.3 3445950 3448265 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(3445950..3448265) Bordetella bronchiseptica RB50 2660944 NP_889764.1 CDS BB3228 NC_002927.3 3448283 3448894 R ortholog of Bordetella pertussis (BX470248) BP1265; hypothetical protein complement(3448283..3448894) Bordetella bronchiseptica RB50 2660945 NP_889765.1 CDS parE NC_002927.3 3448894 3450906 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(3448894..3450906) Bordetella bronchiseptica RB50 2659949 NP_889766.1 CDS trxA NC_002927.3 3451049 3451474 D ortholog of Bordetella pertussis (BX470248) BP1263; thioredoxin 1 3451049..3451474 Bordetella bronchiseptica RB50 2662580 NP_889767.1 CDS rho NC_002927.3 3451586 3452842 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 3451586..3452842 Bordetella bronchiseptica RB50 2662581 NP_889768.1 CDS BB3232 NC_002927.3 3452910 3456569 R ortholog of Bordetella pertussis (BX470248) BP1261; hypothetical protein complement(3452910..3456569) Bordetella bronchiseptica RB50 2659740 NP_889769.1 CDS glnE NC_002927.3 3456603 3459428 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3456603..3459428 Bordetella bronchiseptica RB50 2659741 NP_889770.1 CDS BB3234 NC_002927.3 3459464 3460123 D ortholog of Bordetella pertussis (BX470248) BP1259; hypothetical protein 3459464..3460123 Bordetella bronchiseptica RB50 2659627 NP_889771.1 CDS sdaA NC_002927.3 3460274 3461671 R ortholog of Bordetella pertussis (BX470248) BP1258; L-serine dehydratase 1 complement(3460274..3461671) Bordetella bronchiseptica RB50 2659197 NP_889772.1 CDS BB3236 NC_002927.3 3461833 3463494 D ortholog of Bordetella pertussis (BX470248) BP1257; hypothetical protein 3461833..3463494 Bordetella bronchiseptica RB50 2659628 NP_889773.1 CDS BB3237 NC_002927.3 3463528 3464316 R ortholog of Bordetella pertussis (BX470248) BP1256; carboxymethylenebutenolidase complement(3463528..3464316) Bordetella bronchiseptica RB50 2661779 NP_889774.1 CDS BB3238 NC_002927.3 3464371 3465207 R ortholog of Bordetella pertussis (BX470248) BP1255; hypothetical protein complement(3464371..3465207) Bordetella bronchiseptica RB50 2661780 NP_889775.1 CDS polA NC_002927.3 3465318 3468032 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(3465318..3468032) Bordetella bronchiseptica RB50 2662000 NP_889776.1 CDS BB3240 NC_002927.3 3468142 3468714 D ortholog of Bordetella pertussis (BX470248) BP1253; hypothetical protein 3468142..3468714 Bordetella bronchiseptica RB50 2662650 NP_889777.1 CDS BB3241 NC_002927.3 3468863 3469267 D ortholog of Bordetella pertussis (BX470248) BP1252; hypothetical protein 3468863..3469267 Bordetella bronchiseptica RB50 2660819 NP_889778.1 CDS BB3242 NC_002927.3 3469264 3469989 D ortholog of Bordetella pertussis (BX470248) BP1251; toxin 3469264..3469989 Bordetella bronchiseptica RB50 2660820 NP_889779.1 CDS typA NC_002927.3 3470060 3471880 R ortholog of Bordetella pertussis (BX470248) BP1250; GTP-binding elongation factor complement(3470060..3471880) Bordetella bronchiseptica RB50 2662607 NP_889780.1 CDS truB NC_002927.3 3471897 3472631 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(3471897..3472631) Bordetella bronchiseptica RB50 2660328 NP_889781.1 CDS rbfA NC_002927.3 3472676 3473077 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3472676..3473077) Bordetella bronchiseptica RB50 2660326 NP_889782.1 CDS infB NC_002927.3 3473105 3476098 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(3473105..3476098) Bordetella bronchiseptica RB50 2660327 NP_889783.1 CDS nusA NC_002927.3 3476175 3477653 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(3476175..3477653) Bordetella bronchiseptica RB50 2661051 NP_889784.1 CDS BB3248 NC_002927.3 3477650 3478156 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(3477650..3478156) Bordetella bronchiseptica RB50 2660590 NP_889785.1 CDS BB3249 NC_002927.3 3478618 3480399 R ortholog of Bordetella pertussis (BX470248) BP1244; hypothetical protein complement(3478618..3480399) Bordetella bronchiseptica RB50 2660591 NP_889786.1 CDS BB3250 NC_002927.3 3480396 3481490 R ortholog of Bordetella pertussis (BX470248) BP1243; hypothetical protein complement(3480396..3481490) Bordetella bronchiseptica RB50 2660731 NP_889787.1 CDS BB3251 NC_002927.3 3482451 3483362 R ortholog of Bordetella pertussis (BX470248) BP1242; LysR family transcriptional regulator complement(3482451..3483362) Bordetella bronchiseptica RB50 2659837 NP_889788.1 CDS BB3252 NC_002927.3 3483467 3484057 D ortholog of Bordetella pertussis (BX470248) BP1241; hypothetical protein 3483467..3484057 Bordetella bronchiseptica RB50 2660530 NP_889789.1 CDS BB3253 NC_002927.3 3484110 3485207 R ortholog of Bordetella pertussis (BX470248) BP1240; hypothetical protein complement(3484110..3485207) Bordetella bronchiseptica RB50 2660766 NP_889790.1 CDS BB3254 NC_002927.3 3485324 3485659 D ortholog of Bordetella pertussis (BX470248) BP1239; hypothetical protein 3485324..3485659 Bordetella bronchiseptica RB50 2659926 NP_889791.1 CDS BB3255 NC_002927.3 3486158 3486802 R ortholog of Bordetella pertussis (BX470248) BP1238; glutathione-S-transferase complement(3486158..3486802) Bordetella bronchiseptica RB50 2661459 NP_889792.1 CDS ispH NC_002927.3 3486841 3487821 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(3486841..3487821) Bordetella bronchiseptica RB50 2661460 NP_889793.1 CDS fkpB NC_002927.3 3487818 3488294 R ortholog of Bordetella pertussis (BX470248) BP1236; FkbP-type peptidyl-prolyl cis-trans isomerase complement(3487818..3488294) Bordetella bronchiseptica RB50 2659420 NP_889794.1 CDS radC NC_002927.3 3488347 3489024 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 3488347..3489024 Bordetella bronchiseptica RB50 2659421 NP_889795.1 CDS BB3259 NC_002927.3 3489111 3489740 D ortholog of Bordetella pertussis (BX470248) BP1234; hypothetical protein 3489111..3489740 Bordetella bronchiseptica RB50 2661432 NP_889796.1 CDS BB3260 NC_002927.3 3489768 3490622 D ortholog of Bordetella pertussis (BX470248) BP1233; tryptophan oxygenase 3489768..3490622 Bordetella bronchiseptica RB50 2661433 NP_889797.1 CDS rpmE2 NC_002927.3 3490791 3491057 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 3490791..3491057 Bordetella bronchiseptica RB50 2659437 NP_889798.1 CDS BB3262 NC_002927.3 3491173 3492909 D ortholog of Bordetella pertussis (BX470248) BP1231; hypothetical protein 3491173..3492909 Bordetella bronchiseptica RB50 2659785 NP_889799.1 CDS norM NC_002927.3 3492906 3494312 D ortholog of Bordetella pertussis (BX470248) BP1230; multidrug resistance protein 3492906..3494312 Bordetella bronchiseptica RB50 2659786 NP_889800.1 CDS BB3264 NC_002927.3 3494380 3494607 R ortholog of Bordetella pertussis (BX470248) BP1229; hypothetical protein complement(3494380..3494607) Bordetella bronchiseptica RB50 2659758 NP_889801.1 CDS BB3265 NC_002927.3 3494766 3495539 R ortholog of Bordetella pertussis (BX470248) BP1228; hypothetical protein complement(3494766..3495539) Bordetella bronchiseptica RB50 2662234 NP_889802.1 CDS radA NC_002927.3 3495562 3496815 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(3495562..3496815) Bordetella bronchiseptica RB50 2661942 NP_889803.1 CDS BB3267 NC_002927.3 3497050 3498765 D ortholog of Bordetella pertussis (BX470248) BP1226; hypothetical protein 3497050..3498765 Bordetella bronchiseptica RB50 2661943 NP_889804.2 CDS BB3268 NC_002927.3 3498843 3499421 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 3498843..3499421 Bordetella bronchiseptica RB50 2663897 NP_889805.1 CDS BB3269 NC_002927.3 3499425 3500147 D ortholog of Bordetella pertussis (BX470248) BP1223; hypothetical protein 3499425..3500147 Bordetella bronchiseptica RB50 2660028 NP_889806.1 CDS BB3270 NC_002927.3 3500161 3500877 R ortholog of Bordetella pertussis (BX470248) BP1222; short chain dehydrogenase complement(3500161..3500877) Bordetella bronchiseptica RB50 2659048 NP_889807.1 CDS dadX NC_002927.3 3501029 3502156 R ortholog of Bordetella pertussis (BX470248) BP1221; alanine racemase, catabolic complement(3501029..3502156) Bordetella bronchiseptica RB50 2659049 NP_889808.1 CDS BB3272 NC_002927.3 3502285 3503115 D ortholog of Bordetella pertussis (BX470248) BP1220; phytoene synthase 3502285..3503115 Bordetella bronchiseptica RB50 2660054 NP_889809.1 CDS BB3273 NC_002927.3 3503117 3503980 D ortholog of Bordetella pertussis (BX470248) BP1219; phytoene synthase 3503117..3503980 Bordetella bronchiseptica RB50 2661180 NP_889810.1 CDS BB3274 NC_002927.3 3503977 3505308 D ortholog of Bordetella pertussis (BX470248) BP1218; hypothetical protein 3503977..3505308 Bordetella bronchiseptica RB50 2659070 NP_889811.1 CDS ccrB NC_002927.3 3505331 3505717 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(3505331..3505717) Bordetella bronchiseptica RB50 2660100 NP_889812.1 CDS BB3276 NC_002927.3 3505727 3506287 R ortholog of Bordetella pertussis (BX470248) BP1216; hypothetical protein complement(3505727..3506287) Bordetella bronchiseptica RB50 2660516 NP_889813.1 CDS nodJ NC_002927.3 3506388 3507173 R ortholog of Bordetella pertussis (BX470248) BP1215; ABC transporter permease complement(3506388..3507173) Bordetella bronchiseptica RB50 2660517 NP_889814.1 CDS nodI NC_002927.3 3507170 3508117 R ortholog of Bordetella pertussis (BX470248) BP1214; ABC transporter ATP-binding protein complement(3507170..3508117) Bordetella bronchiseptica RB50 2662605 NP_889815.1 CDS BB3279 NC_002927.3 3508265 3508894 D ortholog of Bordetella pertussis (BX470248) BP1213; hypothetical protein 3508265..3508894 Bordetella bronchiseptica RB50 2660702 NP_889816.1 CDS BB3280 NC_002927.3 3508917 3509432 D ortholog of Bordetella pertussis (BX470248) BP1212; hypothetical protein 3508917..3509432 Bordetella bronchiseptica RB50 2660703 NP_889817.1 CDS BB3281 NC_002927.3 3509462 3510262 D ortholog of Bordetella pertussis (BX470248) BP1211; hypothetical protein 3509462..3510262 Bordetella bronchiseptica RB50 2660983 NP_889818.1 CDS apbE NC_002927.3 3510267 3511283 D ortholog of Bordetella pertussis (BX470248) BP1210; thiamine biosynthesis protein 3510267..3511283 Bordetella bronchiseptica RB50 2660984 NP_889819.1 CDS BB3283 NC_002927.3 3511283 3512662 D ortholog of Bordetella pertussis (BX470248) BP1209; oxidoreductase 3511283..3512662 Bordetella bronchiseptica RB50 2660985 NP_889820.1 CDS BB3284 NC_002927.3 3512678 3513634 R ortholog of Bordetella pertussis (BX470248) BP1208; hypothetical protein complement(3512678..3513634) Bordetella bronchiseptica RB50 2659967 NP_889821.1 CDS BB3285 NC_002927.3 3513682 3515124 R ortholog of Bordetella pertussis (BX470248) BP1207; N-acyl-D-glutamate deacylase complement(3513682..3515124) Bordetella bronchiseptica RB50 2659968 NP_889822.1 CDS BB3286 NC_002927.3 3515229 3516191 D ortholog of Bordetella pertussis (BX470248) BP1206; LysR family transcriptional regulator 3515229..3516191 Bordetella bronchiseptica RB50 2659969 NP_889823.1 CDS BB3287 NC_002927.3 3516199 3516651 R ortholog of Bordetella pertussis (BX470248) BP1205; hypothetical protein complement(3516199..3516651) Bordetella bronchiseptica RB50 2659477 NP_889824.1 CDS BB3288 NC_002927.3 3516719 3517549 R ortholog of Bordetella pertussis (BX470248) BP1204; hypothetical protein complement(3516719..3517549) Bordetella bronchiseptica RB50 2659478 NP_889825.1 CDS BB3289 NC_002927.3 3517559 3518767 R ortholog of Bordetella pertussis (BX470248) BP1203; hypothetical protein complement(3517559..3518767) Bordetella bronchiseptica RB50 2659479 NP_889826.1 CDS BB3290 NC_002927.3 3518931 3519614 D ortholog of Bordetella pertussis (BX470248) BP1202; TetR family transcriptional regulator 3518931..3519614 Bordetella bronchiseptica RB50 2660485 NP_889827.1 CDS bapB NC_002927.3 3521978 3523819 R ortholog of Bordetella pertussis (BX470248) BP1200; autotransporter complement(3521978..3523819) Bordetella bronchiseptica RB50 2660515 NP_889828.1 CDS clpB NC_002927.3 3524136 3526733 R ortholog of Bordetella pertussis (BX470248) BP1198; ATP-dependent protease, ATPase subunit complement(3524136..3526733) Bordetella bronchiseptica RB50 2659866 NP_889829.1 CDS btr NC_002927.3 3527056 3527784 D ortholog of Bordetella pertussis (BX470248) BP1197; transcriptional regulatory protein 3527056..3527784 Bordetella bronchiseptica RB50 2659035 NP_889830.1 CDS BB3295 NC_002927.3 3527781 3528935 D ortholog of Bordetella pertussis (BX470248) BP1196; hypothetical protein 3527781..3528935 Bordetella bronchiseptica RB50 2661992 NP_889831.1 CDS BB3296 NC_002927.3 3528972 3529313 R ortholog of Bordetella pertussis (BX470248) BP1195; ferredoxin complement(3528972..3529313) Bordetella bronchiseptica RB50 2661993 NP_889832.1 CDS BB3297 NC_002927.3 3529310 3529927 R ortholog of Bordetella pertussis (BX470248) BP1194; hypothetical protein complement(3529310..3529927) Bordetella bronchiseptica RB50 2660095 NP_889833.1 CDS BB3298 NC_002927.3 3529977 3530195 R ortholog of Bordetella pertussis (BX470248) BP1193; hypothetical protein complement(3529977..3530195) Bordetella bronchiseptica RB50 2660096 NP_889834.1 CDS BB3299 NC_002927.3 3530220 3530546 R ortholog of Bordetella pertussis (BX470248) BP1192; hypothetical protein complement(3530220..3530546) Bordetella bronchiseptica RB50 2662191 NP_889835.1 CDS BB3300 NC_002927.3 3530691 3531596 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigJ complement(3530691..3531596) Bordetella bronchiseptica RB50 2662192 NP_889836.1 CDS BB3301 NC_002927.3 3531589 3532035 R ortholog of Bordetella pertussis (BX470248) BP1190; hypothetical protein complement(3531589..3532035) Bordetella bronchiseptica RB50 2662193 NP_889837.1 CDS BB3302 NC_002927.3 3532263 3532691 D ortholog of Bordetella pertussis (BX470248) BP1189; lipoprotein 3532263..3532691 Bordetella bronchiseptica RB50 2661254 NP_889838.1 CDS BB3303 NC_002927.3 3532699 3532917 R ortholog of Bordetella pertussis (BX470248) BP1188A; hypothetical protein complement(3532699..3532917) Bordetella bronchiseptica RB50 2661255 NP_889839.1 CDS BB3304 NC_002927.3 3532929 3533813 R ortholog of Bordetella pertussis (BX470248) BP1188; hypothetical protein complement(3532929..3533813) Bordetella bronchiseptica RB50 2661791 NP_889840.1 CDS BB3305 NC_002927.3 3534507 3535130 D ortholog of Bordetella pertussis (BX470248) BP1186; hypothetical protein 3534507..3535130 Bordetella bronchiseptica RB50 2661792 NP_889841.1 CDS aspC NC_002927.3 3535127 3536329 D ortholog of Bordetella pertussis (BX470248) BP1185; aspartate aminotransferase 3535127..3536329 Bordetella bronchiseptica RB50 2661793 NP_889842.1 CDS BB3307 NC_002927.3 3536395 3537213 D ortholog of Bordetella pertussis (BX470248) BP1184; substrate-binding protein 3536395..3537213 Bordetella bronchiseptica RB50 2660494 NP_889843.1 CDS BB3308 NC_002927.3 3537317 3538006 D ortholog of Bordetella pertussis (BX470248) BP1183; amino acids ABC transporter permease 3537317..3538006 Bordetella bronchiseptica RB50 2662222 NP_889844.1 CDS BB3309 NC_002927.3 3537999 3538688 D ortholog of Bordetella pertussis (BX470248) BP1182; amino acids ABC transporter permease 3537999..3538688 Bordetella bronchiseptica RB50 2661873 NP_889845.1 CDS glnQ NC_002927.3 3538708 3539445 D ortholog of Bordetella pertussis (BX470248) BP1181; amino acids ABC transporter ATP-binding protein 3538708..3539445 Bordetella bronchiseptica RB50 2660420 NP_889846.1 CDS BB3311 NC_002927.3 3539519 3540493 D ortholog of Bordetella pertussis (BX470248) BP1180; LysR family transcriptional regulator 3539519..3540493 Bordetella bronchiseptica RB50 2661139 NP_889847.1 CDS BB3312 NC_002927.3 3540839 3541702 D ortholog of Bordetella pertussis (BX470248) BP1178; hypothetical protein 3540839..3541702 Bordetella bronchiseptica RB50 2661563 NP_889848.1 CDS BB3313 NC_002927.3 3541951 3542361 R dioxygenase complement(3541951..3542361) Bordetella bronchiseptica RB50 2661868 NP_889849.1 CDS BB3314 NC_002927.3 3542536 3542748 D hypothetical protein 3542536..3542748 Bordetella bronchiseptica RB50 2659195 NP_889850.1 CDS BB3315 NC_002927.3 3542847 3544133 R transporter complement(3542847..3544133) Bordetella bronchiseptica RB50 2659196 NP_889851.1 CDS BB3316 NC_002927.3 3544243 3545133 D LysR family transcriptional regulator 3544243..3545133 Bordetella bronchiseptica RB50 2661706 NP_889852.1 CDS BB3317 NC_002927.3 3545256 3547331 D signalling protein 3545256..3547331 Bordetella bronchiseptica RB50 2659036 NP_889853.1 CDS BB3318 NC_002927.3 3547432 3548514 D ortholog of Bordetella pertussis (BX470248) BP2180; hypothetical protein 3547432..3548514 Bordetella bronchiseptica RB50 2660013 NP_889854.1 CDS BB3319 NC_002927.3 3548530 3549291 R ortholog of Bordetella pertussis (BX470248) BP2179; ABC transporter complement(3548530..3549291) Bordetella bronchiseptica RB50 2662697 NP_889855.1 CDS BB3320 NC_002927.3 3549288 3550211 R ortholog of Bordetella pertussis (BX470248) BP2178; ABC transporter ATP-binding protein complement(3549288..3550211) Bordetella bronchiseptica RB50 2659580 NP_889856.1 CDS BB3321 NC_002927.3 3550310 3550834 R ortholog of Bordetella pertussis (BX470248) BP2177; hypothetical protein complement(3550310..3550834) Bordetella bronchiseptica RB50 2660496 NP_889857.1 CDS BB3322 NC_002927.3 3550843 3551586 R ortholog of Bordetella pertussis (BX470248) BP2176; inner membrane protein complement(3550843..3551586) Bordetella bronchiseptica RB50 2660497 NP_889858.1 CDS BB3323 NC_002927.3 3551682 3551921 R ortholog of Bordetella pertussis (BX470248) BP2175; inner membrane protein complement(3551682..3551921) Bordetella bronchiseptica RB50 2660465 NP_889859.1 CDS BB3324 NC_002927.3 3551935 3552144 R ortholog of Bordetella pertussis (BX470248) BP2174; lipoprotein complement(3551935..3552144) Bordetella bronchiseptica RB50 2658971 NP_889860.1 CDS BB3325 NC_002927.3 3552173 3553663 R ortholog of Bordetella pertussis (BX470248) BP2173; ferredoxin complement(3552173..3553663) Bordetella bronchiseptica RB50 2659292 NP_889861.1 CDS BB3326 NC_002927.3 3553755 3554693 R ortholog of Bordetella pertussis (BX470248) BP2172; cytochrome C oxidase subunit complement(3553755..3554693) Bordetella bronchiseptica RB50 2660309 NP_889862.1 CDS BB3327 NC_002927.3 3554690 3554866 R ortholog of Bordetella pertussis (BX470248) BP2171; cytochrome C oxidase subunit complement(3554690..3554866) Bordetella bronchiseptica RB50 2661430 NP_889863.1 CDS BB3328 NC_002927.3 3554869 3555531 R CcoO; FixO; cbb3-type cytochrome c oxidase subunit II complement(3554869..3555531) Bordetella bronchiseptica RB50 2661431 NP_889864.1 CDS BB3329 NC_002927.3 3555542 3557029 R CcoN; FixN; cbb3-type cytochrome c oxidase subunit I complement(3555542..3557029) Bordetella bronchiseptica RB50 2663767 NP_889865.1 CDS BB3330 NC_002927.3 3557154 3557297 R ortholog of Bordetella pertussis (BX470248) BP2168; outer membrane protein complement(3557154..3557297) Bordetella bronchiseptica RB50 2661947 NP_889866.1 CDS BB3331 NC_002927.3 3557294 3558268 R ortholog of Bordetella pertussis (BX470248) BP2167; hypothetical protein complement(3557294..3558268) Bordetella bronchiseptica RB50 2661401 NP_889867.1 CDS bioA NC_002927.3 3558333 3559607 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(3558333..3559607) Bordetella bronchiseptica RB50 2661402 NP_889868.1 CDS BB3333 NC_002927.3 3559705 3560904 D ortholog of Bordetella pertussis (BX470248) BP2164; 8-amino-7-oxononanoate synthase 3559705..3560904 Bordetella bronchiseptica RB50 2661549 NP_889869.1 CDS BB3334 NC_002927.3 3560901 3561554 D ortholog of Bordetella pertussis (BX470248) BP2163; hypothetical protein 3560901..3561554 Bordetella bronchiseptica RB50 2660307 NP_889870.1 CDS BB3335 NC_002927.3 3561551 3562987 D ortholog of Bordetella pertussis (BX470248) BP2162; biotin synthesis protein 3561551..3562987 Bordetella bronchiseptica RB50 2660809 NP_889871.1 CDS BB3336 NC_002927.3 3562975 3563334 D ortholog of Bordetella pertussis (BX470248) BP2161; integral membrane protein 3562975..3563334 Bordetella bronchiseptica RB50 2660810 NP_889872.1 CDS BB3337 NC_002927.3 3563327 3564070 D ortholog of Bordetella pertussis (BX470248) BP2160; hypothetical protein 3563327..3564070 Bordetella bronchiseptica RB50 2661044 NP_889873.1 CDS BB3338 NC_002927.3 3564081 3564791 R ortholog of Bordetella pertussis (BX470248) BP2086; hypothetical protein complement(3564081..3564791) Bordetella bronchiseptica RB50 2661045 NP_889874.1 CDS aceA NC_002927.3 3565251 3566573 R Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase complement(3565251..3566573) Bordetella bronchiseptica RB50 2660375 NP_889875.2 CDS queF NC_002927.3 3566892 3567713 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3566892..3567713 Bordetella bronchiseptica RB50 2660959 NP_889876.1 CDS BB3341 NC_002927.3 3567720 3568973 R ortholog of Bordetella pertussis (BX470248) BP2083; transmembrane transport protein complement(3567720..3568973) Bordetella bronchiseptica RB50 2661619 NP_889877.1 CDS pgsA NC_002927.3 3569137 3569709 R ortholog of Bordetella pertussis (BX470248) BP2082; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(3569137..3569709) Bordetella bronchiseptica RB50 2660709 NP_889878.1 CDS uvrC NC_002927.3 3569749 3571488 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(3569749..3571488) Bordetella bronchiseptica RB50 2661340 NP_889879.1 CDS nagZ NC_002927.3 3571541 3572602 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(3571541..3572602) Bordetella bronchiseptica RB50 2661310 NP_889880.1 CDS acpS NC_002927.3 3572641 3573102 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(3572641..3573102) Bordetella bronchiseptica RB50 2661311 NP_889881.1 CDS pdxJ NC_002927.3 3573187 3573933 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(3573187..3573933) Bordetella bronchiseptica RB50 2662217 NP_889882.1 CDS BB3347 NC_002927.3 3573930 3575429 R ortholog of Bordetella pertussis (BX470248) BP2077; efflux system outer membrane component complement(3573930..3575429) Bordetella bronchiseptica RB50 2662218 NP_889883.1 CDS BB3348 NC_002927.3 3575426 3578656 R ortholog of Bordetella pertussis (BX470248) BP2076; efflux system transmembrane protein complement(3575426..3578656) Bordetella bronchiseptica RB50 2659998 NP_889884.1 CDS BB3349 NC_002927.3 3578723 3579967 R ortholog of Bordetella pertussis (BX470248) BP2075; efflux system inner membrane protein complement(3578723..3579967) Bordetella bronchiseptica RB50 2658985 NP_889885.1 CDS BB3350 NC_002927.3 3580220 3580594 R ortholog of Bordetella pertussis (BX470248) BP2074; transcriptional regulator complement(3580220..3580594) Bordetella bronchiseptica RB50 2659072 NP_889886.1 CDS BB3351 NC_002927.3 3580697 3581875 R ortholog of Bordetella pertussis (BX470248) BP2073; hypothetical protein complement(3580697..3581875) Bordetella bronchiseptica RB50 2661232 NP_889887.1 CDS BB3353 NC_002927.3 3582588 3583394 D ortholog of Bordetella pertussis (BX470248) BP2071; molybdenum-binding protein 3582588..3583394 Bordetella bronchiseptica RB50 2662025 NP_889888.1 CDS BB3354 NC_002927.3 3583420 3584214 R ortholog of Bordetella pertussis (BX470248) BP2070; ABC transporter ATP-binding protein complement(3583420..3584214) Bordetella bronchiseptica RB50 2660398 NP_889889.1 CDS BB3355 NC_002927.3 3584216 3585106 R ortholog of Bordetella pertussis (BX470248) BP2069; transmembrane component of ABC transporter complement(3584216..3585106) Bordetella bronchiseptica RB50 2660677 NP_889890.1 CDS BB3356 NC_002927.3 3585216 3586190 R ortholog of Bordetella pertussis (BX470248) BP2068; hypothetical protein complement(3585216..3586190) Bordetella bronchiseptica RB50 2660678 NP_889891.1 CDS BB3357 NC_002927.3 3586349 3586861 R ortholog of Bordetella pertussis (BX470248) BP2067; superoxide dismutase complement(3586349..3586861) Bordetella bronchiseptica RB50 2659965 NP_889892.1 CDS BB3358 NC_002927.3 3587018 3587989 R ortholog of Bordetella pertussis (BX470248) BP2066; hypothetical protein complement(3587018..3587989) Bordetella bronchiseptica RB50 2661448 NP_889893.1 CDS BB3359 NC_002927.3 3588185 3589726 R catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase complement(3588185..3589726) Bordetella bronchiseptica RB50 2660335 NP_889894.1 CDS BB3360 NC_002927.3 3589732 3590538 R ortholog of Bordetella pertussis (BX470248) BP2063; hypothetical protein complement(3589732..3590538) Bordetella bronchiseptica RB50 2660996 NP_889895.1 CDS BB3361 NC_002927.3 3590535 3591671 R ortholog of Bordetella pertussis (BX470248) BP2062; malonyl-CoA decarboxylase complement(3590535..3591671) Bordetella bronchiseptica RB50 2660997 NP_889896.1 CDS BB3362 NC_002927.3 3591787 3592551 R ortholog of Bordetella pertussis (BX470248) BP2061; GntR family transcriptional regulator complement(3591787..3592551) Bordetella bronchiseptica RB50 2660357 NP_889897.1 CDS BB3363 NC_002927.3 3592665 3593471 R ortholog of Bordetella pertussis (BX470248) BP2060; hypothetical protein complement(3592665..3593471) Bordetella bronchiseptica RB50 2660358 NP_889898.1 CDS BB3364 NC_002927.3 3593518 3594723 R catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase complement(3593518..3594723) Bordetella bronchiseptica RB50 2660359 NP_889899.1 CDS BB3365 NC_002927.3 3594772 3595146 R ortholog of Bordetella pertussis (BX470248) BP2058; tautomerase complement(3594772..3595146) Bordetella bronchiseptica RB50 2660999 NP_889900.1 CDS BB3366 NC_002927.3 3595247 3596509 R ortholog of Bordetella pertussis (BX470248) BP2057; ABC transporter ATP-binding protein complement(3595247..3596509) Bordetella bronchiseptica RB50 2661000 NP_889901.1 CDS BB3367 NC_002927.3 3596506 3597363 R ortholog of Bordetella pertussis (BX470248) BP2056; binding-protein-dependent transport protein complement(3596506..3597363) Bordetella bronchiseptica RB50 2660084 NP_889902.1 CDS BB3368 NC_002927.3 3597536 3598537 R ortholog of Bordetella pertussis (BX470248) BP2055; glycine/betaine ABC transporter substrate-binding protein complement(3597536..3598537) Bordetella bronchiseptica RB50 2660061 NP_889903.1 CDS BB3369 NC_002927.3 3598989 3600254 R ortholog of Bordetella pertussis (BX470248) BP2053; cyclopropane-fatty-acyl-phospholipid synthase complement(3598989..3600254) Bordetella bronchiseptica RB50 2663899 NP_889904.1 CDS BB3370 NC_002927.3 3600441 3601607 D ortholog of Bordetella pertussis (BX470248) BP2052; transmembrane transport protein 3600441..3601607 Bordetella bronchiseptica RB50 2663900 NP_889905.1 CDS rpmB NC_002927.3 3601977 3602213 D required for 70S ribosome assembly; 50S ribosomal protein L28 3601977..3602213 Bordetella bronchiseptica RB50 2659120 NP_889906.1 CDS rpmG NC_002927.3 3602277 3602444 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3602277..3602444 Bordetella bronchiseptica RB50 2659749 NP_889907.1 CDS BB3373 NC_002927.3 3602558 3604453 R ortholog of Bordetella pertussis (BX470248) BP2049; sulfate transporter complement(3602558..3604453) Bordetella bronchiseptica RB50 2659750 NP_889908.1 CDS bph2 NC_002927.3 3604906 3605244 D ortholog of Bordetella pertussis (BX470248) bph2; DNA-binding protein Bph2 3604906..3605244 Bordetella bronchiseptica RB50 2663904 NP_889909.1 CDS BB3375 NC_002927.3 3605367 3605879 D ortholog of Bordetella pertussis (BX470248) BP2046; MarR family transcriptional regulator 3605367..3605879 Bordetella bronchiseptica RB50 2661199 NP_889910.1 CDS BB3376 NC_002927.3 3605876 3607081 D ortholog of Bordetella pertussis (BX470248) BP2045; transmembrane transport protein 3605876..3607081 Bordetella bronchiseptica RB50 2661200 NP_889911.1 CDS leuS NC_002927.3 3607159 3609816 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3607159..3609816 Bordetella bronchiseptica RB50 2659654 NP_889912.1 CDS BB3378 NC_002927.3 3609832 3610491 D ortholog of Bordetella pertussis (BX470248) BP2043; lipoprotein 3609832..3610491 Bordetella bronchiseptica RB50 2662138 NP_889913.1 CDS holA NC_002927.3 3610494 3611549 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 3610494..3611549 Bordetella bronchiseptica RB50 2659996 NP_889914.1 CDS proA NC_002927.3 3611671 3612930 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 3611671..3612930 Bordetella bronchiseptica RB50 2659997 NP_889915.1 CDS BB3381 NC_002927.3 3612927 3613322 D ortholog of Bordetella pertussis (BX470248) BP2040; hypothetical protein 3612927..3613322 Bordetella bronchiseptica RB50 2663920 NP_889916.1 CDS BB3382 NC_002927.3 3613345 3614739 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(3613345..3614739) Bordetella bronchiseptica RB50 2663921 NP_889917.1 CDS BB3383 NC_002927.3 3614921 3615889 D ortholog of Bordetella pertussis (BX470248) BP2038; hydroxlacyl-CoA dehydrogenase 3614921..3615889 Bordetella bronchiseptica RB50 2662781 NP_889918.1 CDS BB3384 NC_002927.3 3615886 3616158 D ortholog of Bordetella pertussis (BX470248) BP2037; hypothetical protein 3615886..3616158 Bordetella bronchiseptica RB50 2662797 NP_889919.1 CDS BB3385 NC_002927.3 3616272 3616673 D ortholog of Bordetella pertussis (BX470248) BP2036; hypothetical protein 3616272..3616673 Bordetella bronchiseptica RB50 2662825 NP_889920.1 CDS BB3386 NC_002927.3 3623214 3624677 D ortholog of Bordetella pertussis (BX470248) BP2317; ribonuclease 3623214..3624677 Bordetella bronchiseptica RB50 2662897 NP_889921.1 CDS BB3387 NC_002927.3 3624711 3625613 R ortholog of Bordetella pertussis (BX470248) BP2318; dehydratase complement(3624711..3625613) Bordetella bronchiseptica RB50 2663092 NP_889922.1 CDS BB3388 NC_002927.3 3625610 3626155 R ortholog of Bordetella pertussis (BX470248) BP2319; transcriptional regulator complement(3625610..3626155) Bordetella bronchiseptica RB50 2663093 NP_889923.1 CDS BB3389 NC_002927.3 3626239 3627738 D ortholog of Bordetella pertussis (BX470248) BP2320; inner membrane efflux protein 3626239..3627738 Bordetella bronchiseptica RB50 2663152 NP_889924.1 CDS BB3390 NC_002927.3 3627711 3629486 R ortholog of Bordetella pertussis (BX470248) BP2321; ABC transporter complement(3627711..3629486) Bordetella bronchiseptica RB50 2663252 NP_889925.1 CDS waaF NC_002927.3 3629598 3630563 D ortholog of Bordetella pertussis (BX470248) BP2322; heptosyltransferase II 3629598..3630563 Bordetella bronchiseptica RB50 2663459 NP_889926.1 CDS BB3392 NC_002927.3 3630576 3631340 D ortholog of Bordetella pertussis (BX470248) BP2323; hypothetical protein 3630576..3631340 Bordetella bronchiseptica RB50 2661877 NP_889927.1 CDS BB3393 NC_002927.3 3631345 3631617 D ortholog of Bordetella pertussis (BX470248) BP2324; hypothetical protein 3631345..3631617 Bordetella bronchiseptica RB50 2662614 NP_889928.1 CDS BB3394 NC_002927.3 3631742 3632863 R ortholog of Bordetella pertussis (BX470248) BP2325; transferase complement(3631742..3632863) Bordetella bronchiseptica RB50 2662615 NP_889929.1 CDS BB3395 NC_002927.3 3632871 3633596 R ortholog of Bordetella pertussis (BX470248) BP2326; polysaccharide deacetylase complement(3632871..3633596) Bordetella bronchiseptica RB50 2659812 NP_889930.1 CDS BB3396 NC_002927.3 3633961 3635577 D ortholog of Bordetella pertussis (BX470248) BP2327; outer membrane protein 3633961..3635577 Bordetella bronchiseptica RB50 2659813 NP_889931.1 CDS BB3397 NC_002927.3 3635556 3636668 R ortholog of Bordetella pertussis (BX470248) BP2328; transferase complement(3635556..3636668) Bordetella bronchiseptica RB50 2659977 NP_889932.1 CDS BB3398 NC_002927.3 3636665 3637417 R ortholog of Bordetella pertussis (BX470248) BP2329; transferase complement(3636665..3637417) Bordetella bronchiseptica RB50 2659142 NP_889933.1 CDS BB3399 NC_002927.3 3637414 3638265 R ortholog of Bordetella pertussis (BX470248) BP2330; hypothetical protein complement(3637414..3638265) Bordetella bronchiseptica RB50 2659239 NP_889934.1 CDS BB3400 NC_002927.3 3638258 3639361 R ortholog of Bordetella pertussis (BX470248) BP2331; transferase complement(3638258..3639361) Bordetella bronchiseptica RB50 2661590 NP_889935.1 CDS dnaE NC_002927.3 3639361 3642852 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(3639361..3642852) Bordetella bronchiseptica RB50 2661591 NP_889936.1 CDS BB3402 NC_002927.3 3642963 3643889 D ortholog of Bordetella pertussis (BX470248) BP2333; dioxygenase 3642963..3643889 Bordetella bronchiseptica RB50 2660503 NP_889937.1 CDS BB3403 NC_002927.3 3644022 3647906 R ortholog of Bordetella pertussis (BX470248) BP2334; ATP-dependent helicase complement(3644022..3647906) Bordetella bronchiseptica RB50 2660604 NP_889938.1 CDS BB3405 NC_002927.3 3649516 3649788 D ortholog of Bordetella pertussis (BX470248) BP2336; hypothetical protein 3649516..3649788 Bordetella bronchiseptica RB50 2660648 NP_889939.1 CDS BB3406 NC_002927.3 3649842 3651725 D ortholog of Bordetella pertussis (BX470248) BP2337; phospholipase 3649842..3651725 Bordetella bronchiseptica RB50 2660649 NP_889940.1 CDS BB3407 NC_002927.3 3651739 3652518 R ortholog of Bordetella pertussis (BX470248) BP2338; transporter complement(3651739..3652518) Bordetella bronchiseptica RB50 2660650 NP_889941.1 CDS rpiA NC_002927.3 3652673 3653353 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(3652673..3653353) Bordetella bronchiseptica RB50 2660963 NP_889942.1 CDS BB3409 NC_002927.3 3653407 3655065 R ortholog of Bordetella pertussis (BX470248) BP2340; acyl-CoA dehydrogenase complement(3653407..3655065) Bordetella bronchiseptica RB50 2660964 NP_889943.1 CDS BB3410 NC_002927.3 3655145 3656560 R ortholog of Bordetella pertussis (BX470248) BP2341; lipoprotein complement(3655145..3656560) Bordetella bronchiseptica RB50 2660700 NP_889944.1 CDS BB3411 NC_002927.3 3656638 3657345 D ortholog of Bordetella pertussis (BX470248) BP2342; hypothetical protein 3656638..3657345 Bordetella bronchiseptica RB50 2660701 NP_889945.1 CDS BB3412 NC_002927.3 3657353 3658069 R responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase complement(3657353..3658069) Bordetella bronchiseptica RB50 2661351 NP_889946.1 CDS BB3413 NC_002927.3 3658074 3658430 R ortholog of Bordetella pertussis (BX470248) BP2344; hypothetical protein complement(3658074..3658430) Bordetella bronchiseptica RB50 2661352 NP_889947.1 CDS BB3414 NC_002927.3 3658427 3659236 R ortholog of Bordetella pertussis (BX470248) BP2345; inner membrane permease polyamine transport protein complement(3658427..3659236) Bordetella bronchiseptica RB50 2659460 NP_889948.1 CDS BB3415 NC_002927.3 3659233 3660147 R ortholog of Bordetella pertussis (BX470248) BP2346; inner membrane permease polyamine transport protein complement(3659233..3660147) Bordetella bronchiseptica RB50 2659897 NP_889949.1 CDS BB3416 NC_002927.3 3660144 3661271 R ortholog of Bordetella pertussis (BX470248) BP2347; polyamine transport ATP-binding protein complement(3660144..3661271) Bordetella bronchiseptica RB50 2659328 NP_889950.1 CDS BB3417 NC_002927.3 3661278 3662381 R ortholog of Bordetella pertussis (BX470248) BP2348; polyamine transport protein complement(3661278..3662381) Bordetella bronchiseptica RB50 2659224 NP_889951.1 CDS BB3418 NC_002927.3 3662513 3663247 R catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase complement(3662513..3663247) Bordetella bronchiseptica RB50 2659629 NP_889952.1 CDS BB3419 NC_002927.3 3663237 3663662 R ortholog of Bordetella pertussis (BX470248) BP2350; globin-like protein complement(3663237..3663662) Bordetella bronchiseptica RB50 2659630 NP_889953.1 CDS BB3420 NC_002927.3 3663662 3666193 R ortholog of Bordetella pertussis (BX470248) BP2351; inner membrane transport permease complement(3663662..3666193) Bordetella bronchiseptica RB50 2659631 NP_889954.1 CDS BB3421 NC_002927.3 3666308 3667282 D ortholog of Bordetella pertussis (BX470248) BP2352; C4-dicarboxylate ABC transporter substrate-binding protein 3666308..3667282 Bordetella bronchiseptica RB50 2659041 NP_889955.1 CDS BB3422 NC_002927.3 3667368 3667868 D ortholog of Bordetella pertussis (BX470248) BP2353; inner membrane transport protein 3667368..3667868 Bordetella bronchiseptica RB50 2661290 NP_889956.1 CDS BB3423 NC_002927.3 3667909 3669186 D ortholog of Bordetella pertussis (BX470248) BP2354; inner membrane protein 3667909..3669186 Bordetella bronchiseptica RB50 2661291 NP_889957.1 CDS BB3424 NC_002927.3 3669326 3669958 D fimbrial protein 3669326..3669958 Bordetella bronchiseptica RB50 2662190 NP_889958.1 CDS fimN NC_002927.3 3670074 3670700 D fimbrial subunit protein 3670074..3670700 Bordetella bronchiseptica RB50 2661301 NP_889959.1 CDS fimX NC_002927.3 3670933 3671538 D ortholog of Bordetella pertussis (BX470248) BP2674; fimbrial protein 3670933..3671538 Bordetella bronchiseptica RB50 2661489 NP_889960.1 CDS paaK NC_002927.3 3671592 3672905 R ortholog of Bordetella pertussis (BX470248) BP2675; phenylacetate-coenzyme A ligase complement(3671592..3672905) Bordetella bronchiseptica RB50 2660831 NP_889961.1 CDS paaI NC_002927.3 3672980 3673450 R ortholog of Bordetella pertussis (BX470248) BP2676; phenylacetic acid degradation protein complement(3672980..3673450) Bordetella bronchiseptica RB50 2660832 NP_889962.1 CDS paaG NC_002927.3 3673450 3674238 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3673450..3674238) Bordetella bronchiseptica RB50 2660492 NP_889963.1 CDS BB3430 NC_002927.3 3674249 3675913 R ortholog of Bordetella pertussis (BX470248) BP2678; oxidoreductase complement(3674249..3675913) Bordetella bronchiseptica RB50 2660493 NP_889964.1 CDS paaE NC_002927.3 3675964 3677052 R ortholog of Bordetella pertussis (BX470248) BP2680; phenylacetic acid degradation NADH oxidoreductase complement(3675964..3677052) Bordetella bronchiseptica RB50 2660722 NP_889965.1 CDS paaD NC_002927.3 3677064 3677570 R ortholog of Bordetella pertussis (BX470248) BP2681; phenylacetic acid degradation protein complement(3677064..3677570) Bordetella bronchiseptica RB50 2660415 NP_889966.1 CDS paaC NC_002927.3 3677567 3678331 R ortholog of Bordetella pertussis (BX470248) BP2682; phenylacetic acid degradation protein complement(3677567..3678331) Bordetella bronchiseptica RB50 2659863 NP_889967.1 CDS paaB NC_002927.3 3678347 3678631 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB complement(3678347..3678631) Bordetella bronchiseptica RB50 2659864 NP_889968.1 CDS paaA NC_002927.3 3678696 3679685 R with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA complement(3678696..3679685) Bordetella bronchiseptica RB50 2659865 NP_889969.1 CDS paaX NC_002927.3 3679857 3680786 D ortholog of Bordetella pertussis (BX470248) BP2685; phenylacetic acid degradation operon negative regulatory protein 3679857..3680786 Bordetella bronchiseptica RB50 2660575 NP_889970.1 CDS BB3437 NC_002927.3 3680758 3681444 R ortholog of Bordetella pertussis (BX470248) BP2686; hypothetical protein complement(3680758..3681444) Bordetella bronchiseptica RB50 2660576 NP_889971.1 CDS BB3438 NC_002927.3 3681478 3682023 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(3681478..3682023) Bordetella bronchiseptica RB50 2660577 NP_889972.1 CDS BB3439 NC_002927.3 3682068 3683333 D ortholog of Bordetella pertussis (BX470248) BP2688; integral membrane zinc-metalloprotease 3682068..3683333 Bordetella bronchiseptica RB50 2660310 NP_889973.1 CDS BB3440 NC_002927.3 3683330 3684232 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 3683330..3684232 Bordetella bronchiseptica RB50 2660729 NP_889974.1 CDS BB3441 NC_002927.3 3684409 3685563 R ortholog of Bordetella pertussis (BX470248) BP0977; oxidoreductase complement(3684409..3685563) Bordetella bronchiseptica RB50 2659796 NP_889975.1 CDS BB3442 NC_002927.3 3685560 3686285 R ortholog of Bordetella pertussis (BX470248) BP0976; hypothetical protein complement(3685560..3686285) Bordetella bronchiseptica RB50 2659797 NP_889976.1 CDS rplS NC_002927.3 3686694 3687074 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(3686694..3687074) Bordetella bronchiseptica RB50 2661360 NP_889977.1 CDS BB3444 NC_002927.3 3687382 3688254 D ortholog of Bordetella pertussis (BX470248) BP0974; hypothetical protein 3687382..3688254 Bordetella bronchiseptica RB50 2660408 NP_889978.1 CDS BB3445 NC_002927.3 3688262 3688642 R ortholog of Bordetella pertussis (BX470248) BP0973; hypothetical protein complement(3688262..3688642) Bordetella bronchiseptica RB50 2660479 NP_889979.1 CDS BB3446 NC_002927.3 3688796 3690070 R ortholog of Bordetella pertussis (BX470248) BP0972; hypothetical protein complement(3688796..3690070) Bordetella bronchiseptica RB50 2660480 NP_889980.1 CDS cysN NC_002927.3 3690260 3691558 R ortholog of Bordetella pertussis (BX470248) BP0971; sulfate adenylyltransferase subunit 1 complement(3690260..3691558) Bordetella bronchiseptica RB50 2659663 NP_889981.1 CDS cysD NC_002927.3 3691611 3692519 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(3691611..3692519) Bordetella bronchiseptica RB50 2659010 NP_889982.1 CDS cysH NC_002927.3 3692569 3693321 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(3692569..3693321) Bordetella bronchiseptica RB50 2659994 NP_889983.1 CDS cysA NC_002927.3 3693318 3694382 R ortholog of Bordetella pertussis (BX470248) BP0969; sulfate transport ATP-binding protein complement(3693318..3694382) Bordetella bronchiseptica RB50 2659995 NP_889984.1 CDS cysW NC_002927.3 3694407 3695306 R ortholog of Bordetella pertussis (BX470248) BP0968; sulfate transport system permease complement(3694407..3695306) Bordetella bronchiseptica RB50 2663744 NP_889985.1 CDS cysU NC_002927.3 3695303 3696178 R ortholog of Bordetella pertussis (BX470248) BP0967; sulfate transport system permease complement(3695303..3696178) Bordetella bronchiseptica RB50 2662609 NP_889986.1 CDS sbp NC_002927.3 3696194 3697228 R ortholog of Bordetella pertussis (BX470248) BP0966; sulfate-binding protein precursor complement(3696194..3697228) Bordetella bronchiseptica RB50 2659839 NP_889987.1 CDS BB3454 NC_002927.3 3697418 3698059 R ortholog of Bordetella pertussis (BX470248) BP0965; antioxidant protein complement(3697418..3698059) Bordetella bronchiseptica RB50 2660773 NP_889988.1 CDS BB3455 NC_002927.3 3698142 3699968 R ortholog of Bordetella pertussis (BX470248) BP0964; acyl-CoA dehydrogenase complement(3698142..3699968) Bordetella bronchiseptica RB50 2659418 NP_889989.1 CDS etfA NC_002927.3 3700231 3701160 R ortholog of Bordetella pertussis (BX470248) BP0962; electron transfer flavoprotein subunit alpha complement(3700231..3701160) Bordetella bronchiseptica RB50 2659419 NP_889990.1 CDS etfB NC_002927.3 3701160 3701960 R ortholog of Bordetella pertussis (BX470248) BP0961; electron transfer flavoprotein subunit beta complement(3701160..3701960) Bordetella bronchiseptica RB50 2660500 NP_889991.1 CDS BB3458 NC_002927.3 3701981 3702895 R ortholog of Bordetella pertussis (BX470248) BP0960; histone deacetylase family protein complement(3701981..3702895) Bordetella bronchiseptica RB50 2660934 NP_889992.1 CDS mltB NC_002927.3 3702915 3704060 D ortholog of Bordetella pertussis (BX470248) BP0959; membrane-bound lytic murein transglycosylase B precursor 3702915..3704060 Bordetella bronchiseptica RB50 2659900 NP_889993.1 CDS cysM NC_002927.3 3704117 3705028 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(3704117..3705028) Bordetella bronchiseptica RB50 2659901 NP_889994.1 CDS BB3461 NC_002927.3 3705109 3705693 R ortholog of Bordetella pertussis (BX470248) BP0956; hypothetical protein complement(3705109..3705693) Bordetella bronchiseptica RB50 2660758 NP_889995.1 CDS rfaD NC_002927.3 3705728 3706717 R ortholog of Bordetella pertussis (BX470248) BP0955; ADP-L-glycero-D-manno-heptose-6-epimerase complement(3705728..3706717) Bordetella bronchiseptica RB50 2660759 NP_889996.1 CDS rfaE NC_002927.3 3706714 3707655 R ortholog of Bordetella pertussis (BX470248) BP0954; ADP-heptose synthase complement(3706714..3707655) Bordetella bronchiseptica RB50 2660861 NP_889997.1 CDS BB3464 NC_002927.3 3707652 3708875 R ortholog of Bordetella pertussis (BX470248) BP0953; tetratricopeptide repeat protein complement(3707652..3708875) Bordetella bronchiseptica RB50 2661566 NP_889998.1 CDS BB3465 NC_002927.3 3708918 3709232 R ortholog of Bordetella pertussis (BX470248) BP0952; hypothetical protein complement(3708918..3709232) Bordetella bronchiseptica RB50 2661567 NP_889999.1 CDS ihfB NC_002927.3 3709424 3709756 R ortholog of Bordetella pertussis (BX470248) BP0951; integration host factor beta-subunit complement(3709424..3709756) Bordetella bronchiseptica RB50 2659878 NP_890000.2 CDS rpsA NC_002927.3 3709785 3711500 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(3709785..3711500) Bordetella bronchiseptica RB50 2659879 NP_890001.1 CDS cmk NC_002927.3 3711686 3712357 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(3711686..3712357) Bordetella bronchiseptica RB50 2659232 NP_890002.1 CDS aroA NC_002927.3 3712372 3713700 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(3712372..3713700) Bordetella bronchiseptica RB50 2659145 NP_890003.1 CDS tyrA NC_002927.3 3713697 3714596 R ortholog of Bordetella pertussis (BX470248) BP0947; prephenate dehydrogenase complement(3713697..3714596) Bordetella bronchiseptica RB50 2663955 NP_890004.1 CDS pheA NC_002927.3 3714683 3715768 R ortholog of Bordetella pertussis (BX470248) BP0946; bifunctional chorismate mutase/prephenate dehydratase complement(3714683..3715768) Bordetella bronchiseptica RB50 2662017 NP_890005.1 CDS serC NC_002927.3 3715761 3716894 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(3715761..3716894) Bordetella bronchiseptica RB50 2661959 NP_890006.2 CDS gyrA NC_002927.3 3716894 3719575 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(3716894..3719575) Bordetella bronchiseptica RB50 2661265 NP_890007.1 CDS ompA NC_002927.3 3719946 3720527 D ortholog of Bordetella pertussis (BX470248) BP0943; outer membrane protein A precursor 3719946..3720527 Bordetella bronchiseptica RB50 2661266 NP_890008.1 CDS ubiG NC_002927.3 3720605 3721378 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 3720605..3721378 Bordetella bronchiseptica RB50 2659053 NP_890009.1 CDS BB3476 NC_002927.3 3721375 3722052 D ortholog of Bordetella pertussis (BX470248) BP0941; phosphoglycolate phosphatase 3721375..3722052 Bordetella bronchiseptica RB50 2659054 NP_890010.1 CDS BB3477 NC_002927.3 3722269 3723453 D ortholog of Bordetella pertussis (BX470248) BP0940; sugar efflux transporter 3722269..3723453 Bordetella bronchiseptica RB50 2659056 NP_890011.1 CDS BB3478 NC_002927.3 3724033 3724701 D Similar to Bacteriophage SPBc2 YoqW protein yoqW SWALL:O64131 (EMBL:AF020713) (224 aa) fasta scores: E(): 1.4e-08, 28.07% id in 228 aa, and to Salmonella typhimurium LT2 gifsy-2 prophage protein stm1053 SWALL:Q8ZQ78 (EMBL:AE008743) (208 aa) fasta scores: E(): 1.8e-16, 37.91% id in 182 aa; hypothetical protein 3724033..3724701 Bordetella bronchiseptica RB50 2661879 NP_890012.1 CDS BB3479 NC_002927.3 3724748 3725041 D no significant database matches; hypothetical protein 3724748..3725041 Bordetella bronchiseptica RB50 2659435 NP_890013.1 CDS BB3480 NC_002927.3 3725058 3725672 R no significant database matches; hypothetical protein complement(3725058..3725672) Bordetella bronchiseptica RB50 2659436 NP_890014.1 CDS BB3481 NC_002927.3 3725700 3726161 R no significant database matches; hypothetical protein complement(3725700..3726161) Bordetella bronchiseptica RB50 2660562 NP_890015.1 CDS BB3482 NC_002927.3 3726158 3726712 R Similar to Bacteriophage H19B lysozyme R SWALL:LYCV_BPH19 (SWALL:Q9ZXB7) (177 aa) fasta scores: E(): 0.011, 28.41% id in 183 aa, and to Escherichia coli O157:H7 lysozyme r of prophage cp-933r z2371 or ecs2741 SWALL:Q8X4U1 (EMBL:AE005369) (177 aa) fasta scores: E(): 0.012, 28.41% id in 183 aa; phage lysozyme complement(3726158..3726712) Bordetella bronchiseptica RB50 2660563 NP_890016.1 CDS BB3482A NC_002927.3 3726691 3726933 R Similar to Serratia marcescens phage-holin analog protein regA SWALL:Q54422 (EMBL:U31763) (88 aa) fasta scores: E(): 1.2, 30.13% id in 73 aa, and to Serratia marcescens extracellular secretory protein nucE SWALL:Q54418 (EMBL:U11698) (89 aa) fasta scores: E(): 1.2, 30.3% id in 66 aa; hypothetical protein complement(3726691..3726933) Bordetella bronchiseptica RB50 2660564 NP_890017.1 CDS BB3483 NC_002927.3 3726938 3727750 R no significant database matches; hypothetical protein complement(3726938..3727750) Bordetella bronchiseptica RB50 2660565 NP_890018.1 CDS BB3484 NC_002927.3 3727750 3728013 R no significant database matches; hypothetical protein complement(3727750..3728013) Bordetella bronchiseptica RB50 2660881 NP_890019.1 CDS BB3485 NC_002927.3 3728232 3728648 R no significant database matches; hypothetical protein complement(3728232..3728648) Bordetella bronchiseptica RB50 2660882 NP_890020.1 CDS BB3486 NC_002927.3 3728653 3732609 R Weakly similar to Bacteriophage D3 Orf26 orf26 SWALL:Q9MC95 (EMBL:AF165214) (909 aa) fasta scores: E(): 4.8e-23, 25.98% id in 689 aa; hypothetical protein complement(3728653..3732609) Bordetella bronchiseptica RB50 2660883 NP_890021.1 CDS BB3487 NC_002927.3 3732602 3732991 R Similar to Bacteriophage D3 Orf25 SWALL:Q9MC96 (EMBL:AF165214) (135 aa) fasta scores: E(): 0.00047, 30.46% id in 128 aa; hypothetical protein complement(3732602..3732991) Bordetella bronchiseptica RB50 2660949 NP_890022.1 CDS BB3488 NC_002927.3 3732988 3733581 R Similar to Bacteriophage D3 Orf22 SWALL:Q9MC99 (EMBL:AF165214) (163 aa) fasta scores: E(): 0.091, 25.43% id in 173 aa; hypothetical protein complement(3732988..3733581) Bordetella bronchiseptica RB50 2660950 NP_890023.1 CDS BB3489 NC_002927.3 3733588 3733947 R Similar to Bacteriophage D3 Orf21 SWALL:Q9MCA0 (EMBL:AF165214) (159 aa) fasta scores: E(): 0.00045, 31.37% id in 102 aa; hypothetical protein complement(3733588..3733947) Bordetella bronchiseptica RB50 2660951 NP_890024.1 CDS BB3490 NC_002927.3 3733957 3736557 R Similar to Ralstonia solanacearum probable phage hk97 tail length tape measure-related protein rsc1690 or rs04085 SWALL:Q8XYR8 (EMBL:AL646065) (957 aa) fasta scores: E(): 1.4e-47, 35.26% id in 913 aa, and to Bacteriophage N15 gp16 gene 16 SWALL:O64330 (EMBL:AF064539) (838 aa) fasta scores: E(): 1.2e-28, 28.1% id in 861 aa; phage hk97 tail length tape measure-related protein complement(3733957..3736557) Bordetella bronchiseptica RB50 2660952 NP_890025.1 CDS BB3491 NC_002927.3 3736585 3736875 R Similar to Yersinia pestis hypothetical phage protein Ypo2118 SWALL:Q8ZEP2 (EMBL:AJ414151) (73 aa) fasta scores: E(): 1.3e-08, 52.05% id in 73 aa; hypothetical protein complement(3736585..3736875) Bordetella bronchiseptica RB50 2660695 NP_890026.1 CDS BB3492 NC_002927.3 3736893 3737222 R Similar to Yersinia pestis hypothetical phage protein Ypo2117 SWALL:Q8ZEP3 (EMBL:AJ414151) (103 aa) fasta scores: E(): 2.7e-07, 36.79% id in 106 aa; hypothetical protein complement(3736893..3737222) Bordetella bronchiseptica RB50 2660696 NP_890027.1 CDS BB3493 NC_002927.3 3737235 3737750 R Similar to Ralstonia solanacearum hypothetical protein rsc1689 or rs04083 SWALL:Q8XYR9 (EMBL:AL646065) (217 aa) fasta scores: E(): 4.3e-22, 41.07% id in 168 aa; hypothetical protein complement(3737235..3737750) Bordetella bronchiseptica RB50 2660697 NP_890028.1 CDS BB3494 NC_002927.3 3738005 3738505 R Similar to Bacteriophage phiYeO3-12 1.45 protein 1.45 SWALL:Q9T140 (EMBL:AJ251805) (157 aa) fasta scores: E(): 2.6e-06, 36.06% id in 122 aa, and to Escherichia coli O157:H7 hypothetical protein z3935 z3935 or ecs3504 SWALL:Q8X989 (EMBL:AE005493) (201 aa) fasta scores: E(): 2.1e-14, 37.5% id in 144 aa; hypothetical protein complement(3738005..3738505) Bordetella bronchiseptica RB50 2659604 NP_890029.1 CDS BB3495 NC_002927.3 3738513 3738935 R Similar to Yersinia pestis hypothetical phage protein Ypo2115 SWALL:Q8ZEP5 (EMBL:AJ414151) (135 aa) fasta scores: E(): 5.8e-10, 34.58% id in 133 aa, and to Rhizobium loti hypothetical protein Mlr8015 SWALL:Q984G5 (EMBL:AP003013) (137 aa) fasta scores: E(): 8.8e-06, 33.91% id in 115 aa; hypothetical protein complement(3738513..3738935) Bordetella bronchiseptica RB50 2659605 NP_890030.1 CDS BB3496 NC_002927.3 3738932 3739330 R Similar to Yersinia pestis hypothetical phage protein Ypo2114 SWALL:Q8ZEP6 (EMBL:AJ414151) (194 aa) fasta scores: E(): 1.8e-08, 36.93% id in 111 aa; hypothetical protein complement(3738932..3739330) Bordetella bronchiseptica RB50 2659606 NP_890031.1 CDS BB3497 NC_002927.3 3739327 3739722 R Similar to Rhizobium loti hypothetical protein Mlr8012 SWALL:Q984G8 (EMBL:AP003013) (130 aa) fasta scores: E(): 6.8, 26.82% id in 123 aa; hypothetical protein complement(3739327..3739722) Bordetella bronchiseptica RB50 2659607 NP_890032.1 CDS BB3498 NC_002927.3 3739722 3739922 R no significant database matches; hypothetical protein complement(3739722..3739922) Bordetella bronchiseptica RB50 2659608 NP_890033.1 CDS BB3499 NC_002927.3 3739924 3740406 R Similar to Yersinia pestis hypothetical phage protein Ypo2111 SWALL:Q8ZEP9 (EMBL:AJ414151) (176 aa) fasta scores: E(): 4.1, 26.94% id in 167 aa; hypothetical protein complement(3739924..3740406) Bordetella bronchiseptica RB50 2661452 NP_890034.1 CDS BB3500 NC_002927.3 3740469 3740726 R no significant database matches; hypothetical protein complement(3740469..3740726) Bordetella bronchiseptica RB50 2661453 NP_890035.1 CDS BB3501 NC_002927.3 3740736 3741704 R Similar to Yersinia pestis phage protein ypo2110 SWALL:Q8ZEQ0 (EMBL:AJ414151) (401 aa) fasta scores: E(): 1.1e-09, 27.98% id in 318 aa, and to Bacteriophage SPP1 coat protein 13 SWALL:Q38582 (EMBL:X89721) (324 aa) fasta scores: E(): 0.061, 25.75% id in 198 aa; hypothetical protein complement(3740736..3741704) Bordetella bronchiseptica RB50 2661454 NP_890036.1 CDS BB3502 NC_002927.3 3741731 3742333 R no significant database matches; hypothetical protein complement(3741731..3742333) Bordetella bronchiseptica RB50 2661455 NP_890037.1 CDS BB3503 NC_002927.3 3742457 3742705 R no significant database matches; hypothetical protein complement(3742457..3742705) Bordetella bronchiseptica RB50 2661456 NP_890038.1 CDS BB3504 NC_002927.3 3742705 3743619 R Similar to Yersinia pestis hypothetical phage protein ypo2108 ypo2108 or y2207 SWALL:Q8ZEQ2 (EMBL:AJ414151) (370 aa) fasta scores: E(): 1.4e-40, 39.14% id in 350 aa; hypothetical protein complement(3742705..3743619) Bordetella bronchiseptica RB50 2660332 NP_890039.1 CDS BB3505 NC_002927.3 3743648 3745066 R Similar to Bacteriophage MB78 60 kDa protein gp62 SWALL:Q9T0Q3 (EMBL:Y19202) (540 aa) fasta scores: E(): 2.1e-31, 31.2% id in 455 aa; hypothetical protein complement(3743648..3745066) Bordetella bronchiseptica RB50 2660333 NP_890040.1 CDS BB3506 NC_002927.3 3745069 3746346 R Similar to Bacillus subtilis pbsx phage terminase large subunit xtmB SWALL:XTMB_BACSU (SWALL:P39786) (433 aa) fasta scores: E(): 0.2, 21.58% id in 417 aa, and to Yersinia pestis hypothetical 47.8 kDa protein y1030 or ypmt1.24C SWALL:O68741 (EMBL:AF074611) (418 aa) fasta scores: E(): 2.6e-17, 27.75% id in 436 aa; phage terminase complement(3745069..3746346) Bordetella bronchiseptica RB50 2660334 NP_890041.1 CDS BB3507 NC_002927.3 3746333 3746704 R Similar to Lactobacillus delbrueckii DNA binding protein SWALL:Q8VN11 (EMBL:AJ421486) (112 aa) fasta scores: E(): 0.0039, 31.81% id in 88 aa; phage-related DNA binding protein complement(3746333..3746704) Bordetella bronchiseptica RB50 2660627 NP_890042.1 CDS BB3508 NC_002927.3 3747023 3747463 R no significant database matches; hypothetical protein complement(3747023..3747463) Bordetella bronchiseptica RB50 2660628 NP_890043.1 CDS BB3508A NC_002927.3 3747460 3747663 R no significant database matches; hypothetical protein complement(3747460..3747663) Bordetella bronchiseptica RB50 2660629 NP_890044.1 CDS BB3509 NC_002927.3 3747660 3748343 R Similar to bacteriophage WO hypothetical 16.7 kDa protein gp11 SWALL:Q9JMN0 (EMBL:AB036666) (151 aa) fasta scores: E(): 1.7e-13, 36.61% id in 142 aa, and to Ralstonia solanacearum bacteriophage-related protein rsc3228 or rs02445 SWALL:Q8XUG0 (EMBL:AL646074) (154 aa) fasta scores: E(): 1.1e-21, 46.35% id in 151 aa; hypothetical protein complement(3747660..3748343) Bordetella bronchiseptica RB50 2660630 NP_890045.1 CDS BB3510 NC_002927.3 3748340 3749281 R no significant database matches; hypothetical protein complement(3748340..3749281) Bordetella bronchiseptica RB50 2660631 NP_890046.1 CDS BB3511 NC_002927.3 3749278 3749649 R no significant database matches; hypothetical protein complement(3749278..3749649) Bordetella bronchiseptica RB50 2660725 NP_890047.1 CDS BB3512 NC_002927.3 3749646 3750470 R Similar to Salmonella typhi hypothetical protein Sty2063 sty2063 SWALL:Q8Z5Z8 (EMBL:AL627272) (262 aa) fasta scores: E(): 1.5e-07, 24.43% id in 266 aa, and to Escherichia coli O157:H7 hypothetical protein z2397 z2397 or ecs1944 SWALL:Q8X8R8 (EMBL:AE005370) (262 aa) fasta scores: E(): 1.7e-06, 25.46% id in 267 aa; hypothetical protein complement(3749646..3750470) Bordetella bronchiseptica RB50 2660726 NP_890048.1 CDS BB3513 NC_002927.3 3750470 3750883 R Similar to Bacteriophage phiE125 gp63 63 SWALL:Q8W6N7 (EMBL:AF447491) (112 aa) fasta scores: E(): 9.3e-12, 45.09% id in 102 aa, and to Bacteriophage HK97 gp66 66 SWALL:Q9MCN9 (EMBL:AF069529) (96 aa) fasta scores: E(): 1.1, 30.76% id in 65 aa; hypothetical protein complement(3750470..3750883) Bordetella bronchiseptica RB50 2660727 NP_890049.1 CDS BB3514 NC_002927.3 3750883 3751338 R Similar to Bacteriophage 933W hypothetical 17.4 kDa protein l0093 SWALL:Q9T207 (EMBL:AF125520) (148 aa) fasta scores: E(): 0.017, 27.33% id in 139 aa, and to Yersinia pestis phage protein ninb or ypo2089 SWALL:Q8ZER6 (EMBL:AJ414151) (142 aa) fasta scores: E(): 0.00066, 31.34% id in 134 aa; hypothetical protein complement(3750883..3751338) Bordetella bronchiseptica RB50 2659446 NP_890050.1 CDS BB3515 NC_002927.3 3751338 3751649 R Similar to Bacteriophage D3 CII SWALL:Q37905 (EMBL:AF165214) (102 aa) fasta scores: E(): 0.077, 27.18% id in 103 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical 13.7 kDa protein stm2627 or stm1013 or sty1021 SWALL:O84891 (EMBL:AF001386) (124 aa) fasta scores: E(): 0.00011, 40.21% id in 92 aa; phage-related transcriptional regulator complement(3751338..3751649) Bordetella bronchiseptica RB50 2659447 NP_890051.1 CDS BB3516 NC_002927.3 3751654 3751926 R no significant database matches; hypothetical protein complement(3751654..3751926) Bordetella bronchiseptica RB50 2659448 NP_890052.1 CDS BB3517 NC_002927.3 3751934 3752110 R no significant database matches; hypothetical protein complement(3751934..3752110) Bordetella bronchiseptica RB50 2659449 NP_890053.1 CDS BB3518 NC_002927.3 3752094 3752318 R no significant database matches; hypothetical protein complement(3752094..3752318) Bordetella bronchiseptica RB50 2660434 NP_890054.1 CDS BB3519 NC_002927.3 3752556 3752759 R no significant database matches; hypothetical protein complement(3752556..3752759) Bordetella bronchiseptica RB50 2660435 NP_890055.1 CDS BB3520 NC_002927.3 3752761 3753450 R no significant database matches; hypothetical protein complement(3752761..3753450) Bordetella bronchiseptica RB50 2660436 NP_890056.1 CDS cro NC_002927.3 3753443 3753655 R Similar to Bacteriophage P22 regulatory protein Cro SWALL:RCRO_BPP22 (SWALL:P09964) (61 aa) fasta scores: E(): 3, 34.04% id in 47 aa, and to Bacteriophage 21 Cro protein SWALL:Q9XJP6 (EMBL:AJ237660) (61 aa) fasta scores: E(): 2.5, 32.14% id in 56 aa; phage regulatory protein complement(3753443..3753655) Bordetella bronchiseptica RB50 2661054 NP_890057.1 CDS BB3522 NC_002927.3 3753781 3754125 D Similar to Bacteriophage 434 repressor protein CI SWALL:RPC1_BP434 (SWALL:P16117) (94 aa) fasta scores: E(): 4.6, 32.53% id in 83 aa, and to Streptococcus thermophilus hypothetical transcriptional regulator arp2 SWALL:Q935U1 (EMBL:AJ278471) (111 aa) fasta scores: E(): 0.053, 41.93% id in 62 aa; phage repressor 3753781..3754125 Bordetella bronchiseptica RB50 2661055 NP_890058.1 CDS BB3523 NC_002927.3 3754265 3754591 D Similar to the N-terminal region of Neisseria meningitidis transcriptional regulator nmb0910 SWALL:Q9JZT1 (EMBL:AE002442) (238 aa) fasta scores: E(): 0.0086, 34.92% id in 63 aa; hypothetical protein 3754265..3754591 Bordetella bronchiseptica RB50 2659821 NP_890059.1 CDS BB3524 NC_002927.3 3754683 3755126 D no significant database matches; hypothetical protein 3754683..3755126 Bordetella bronchiseptica RB50 2659822 NP_890060.1 CDS BB3525 NC_002927.3 3755239 3755424 D no significant database matches; hypothetical protein 3755239..3755424 Bordetella bronchiseptica RB50 2659823 NP_890061.1 CDS BB3526 NC_002927.3 3755704 3756123 D no significant database matches; hypothetical protein 3755704..3756123 Bordetella bronchiseptica RB50 2659824 NP_890062.1 CDS BB3527 NC_002927.3 3756155 3756532 D no significant database matches; hypothetical protein 3756155..3756532 Bordetella bronchiseptica RB50 2659825 NP_890063.1 CDS BB3528 NC_002927.3 3756529 3756633 D no significant database matches; hypothetical protein 3756529..3756633 Bordetella bronchiseptica RB50 2661485 NP_890064.1 CDS BB3529 NC_002927.3 3756630 3756938 D no significant database matches; hypothetical protein 3756630..3756938 Bordetella bronchiseptica RB50 2661486 NP_890065.1 CDS BB3530 NC_002927.3 3756935 3757387 D no significant database matches; hypothetical protein 3756935..3757387 Bordetella bronchiseptica RB50 2661487 NP_890066.1 CDS BB3531 NC_002927.3 3757384 3757593 D Similar to Caulobacter crescentus hypothetical protein Cc1139 cc1139 SWALL:Q9A955 (EMBL:AE005792) (57 aa) fasta scores: E(): 2.3, 36.36% id in 44 aa, and to Anabaena sp. hypothetical protein Asl3923 asl3923 SWALL:Q8YQB0 (EMBL:AP003594) (53 aa) fasta scores: E(): 1.8, 34.21% id in 38 aa; hypothetical protein 3757384..3757593 Bordetella bronchiseptica RB50 2659183 NP_890067.1 CDS BB3532 NC_002927.3 3757590 3757757 D hypothetical protein 3757590..3757757 Bordetella bronchiseptica RB50 2659184 NP_890068.1 CDS BB3533 NC_002927.3 3757866 3758516 D Similar to Bacteriophage HK620 hypothetical 25.6 kDa protein hkaL SWALL:Q9AZ29 (EMBL:AF335538) (226 aa) fasta scores: E(): 5.9e-44, 55.34% id in 215 aa; hypothetical protein 3757866..3758516 Bordetella bronchiseptica RB50 2659185 NP_890069.1 CDS BB3534 NC_002927.3 3758530 3759183 D no significant database matches; hypothetical protein 3758530..3759183 Bordetella bronchiseptica RB50 2660029 NP_890070.1 CDS BB3535 NC_002927.3 3759192 3759698 D Similar to Bacteriophage PSA gp46 protein SWALL:Q8W5W1 (EMBL:AJ312240) (159 aa) fasta scores: E(): 4.9e-08, 32.92% id in 164 aa, and to Staphylococcus aureus prophage phiPV83 orf 16 SWALL:Q9MBS3 (EMBL:AB044554) (159 aa) fasta scores: E(): 1.4e-08, 31.09% id in 164 aa; hypothetical protein 3759192..3759698 Bordetella bronchiseptica RB50 2660030 NP_890071.1 CDS BB3536 NC_002927.3 3759734 3759922 D no significant database matches; hypothetical protein 3759734..3759922 Bordetella bronchiseptica RB50 2660031 NP_890072.1 CDS BB3537 NC_002927.3 3759962 3760267 D no significant database matches; hypothetical protein 3759962..3760267 Bordetella bronchiseptica RB50 2660032 NP_890073.1 CDS BB3538 NC_002927.3 3760324 3761415 D Similar to Streptomyces coelicolor hypothetical protein sco1532 sco1532 or scl2.22C SWALL:Q9L277 (EMBL:AL137778) (425 aa) fasta scores: E(): 0.16, 25.69% id in 358 aa; hypothetical protein 3760324..3761415 Bordetella bronchiseptica RB50 2659099 NP_890074.1 CDS BB3539 NC_002927.3 3761405 3761656 D no significant database matches; hypothetical protein 3761405..3761656 Bordetella bronchiseptica RB50 2659100 NP_890075.1 CDS BB3540 NC_002927.3 3761649 3761897 D Weakly similar to Xanthomonas axonopodis virulence regulator xrva or xac3256 SWALL:AAM38100 (EMBL:AE011971) (130 aa) fasta scores: E(): 10, 34.04% id in 47 aa; hypothetical protein 3761649..3761897 Bordetella bronchiseptica RB50 2659101 NP_890076.1 CDS BB3541 NC_002927.3 3761890 3762009 D no significant database matches; hypothetical protein 3761890..3762009 Bordetella bronchiseptica RB50 2659102 NP_890077.1 CDS BB3542 NC_002927.3 3762010 3762264 D Similar to Yersinia pestis phage excisionase ypo2087 SWALL:Q8ZER9 (EMBL:AJ414151) (86 aa) fasta scores: E(): 0.31, 33.33% id in 69 aa, and to Salmonella typhimurium, and Salmonella typhi gifsy-2 prophage, excisionase stm1006 or xis or sty1012 SWALL:Q8XGN6 (EMBL:AE008743) (82 aa) fasta scores: E(): 2.7, 30.98% id in 71 aa; phage excisionase 3762010..3762264 Bordetella bronchiseptica RB50 2659103 NP_890078.1 CDS BB3543 NC_002927.3 3762261 3763484 D Similar to Salmonella typhimurium gifsy-2 prophage, integrase stm1005 SWALL:Q8ZQB0 (EMBL:AE008743) (430 aa) fasta scores: E(): 5.8e-10, 29.01% id in 417 aa, and to Escherichia coli O157:H7 integrase within cp-933o, partial z2084 or ecs2217 SWALL:Q8XC61 (EMBL:AE005346) (183 aa) fasta scores: E(): 6.8e-09, 39.85% id in 138 aa; phage integrase 3762261..3763484 Bordetella bronchiseptica RB50 2659004 NP_890079.1 CDS BB3544 NC_002927.3 3763665 3764576 R ortholog of Bordetella pertussis (BX470248) BP0936; LysR family transcriptional regulator complement(3763665..3764576) Bordetella bronchiseptica RB50 2659759 NP_890080.1 CDS BB3545 NC_002927.3 3764701 3765675 D ortholog of Bordetella pertussis (BX470248) BP0935; hypothetical protein 3764701..3765675 Bordetella bronchiseptica RB50 2661218 NP_890081.1 CDS BB3546 NC_002927.3 3765710 3766069 D ortholog of Bordetella pertussis (BX470248) BP0934; hypothetical protein 3765710..3766069 Bordetella bronchiseptica RB50 2661219 NP_890082.1 CDS BB3547 NC_002927.3 3766136 3767308 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 3766136..3767308 Bordetella bronchiseptica RB50 2662027 NP_890083.1 CDS BB3548 NC_002927.3 3767312 3767734 D ortholog of Bordetella pertussis (BX470248) BP0932; hypothetical protein 3767312..3767734 Bordetella bronchiseptica RB50 2662028 NP_890084.1 CDS BB3549 NC_002927.3 3767739 3768722 D ortholog of Bordetella pertussis (BX470248) BP0931; hypothetical protein 3767739..3768722 Bordetella bronchiseptica RB50 2662029 NP_890085.1 CDS BB3550 NC_002927.3 3768719 3770392 D ortholog of Bordetella pertussis (BX470248) BP0930; CoA ligase 3768719..3770392 Bordetella bronchiseptica RB50 2662095 NP_890086.1 CDS BB3551 NC_002927.3 3770485 3771060 D ortholog of Bordetella pertussis (BX470248) BP0929; hypothetical protein 3770485..3771060 Bordetella bronchiseptica RB50 2659729 NP_890087.1 CDS BB3552 NC_002927.3 3771085 3772074 R ortholog of Bordetella pertussis (BX470248) BP0928; LysR family transcriptional regulator complement(3771085..3772074) Bordetella bronchiseptica RB50 2659730 NP_890088.1 CDS BB3553 NC_002927.3 3772210 3773187 D ortholog of Bordetella pertussis (BX470248) BP0927; hypothetical protein 3772210..3773187 Bordetella bronchiseptica RB50 2659379 NP_890089.1 CDS BB3554 NC_002927.3 3773313 3774386 D ortholog of Bordetella pertussis (BX470248) BP0926; hypothetical protein 3773313..3774386 Bordetella bronchiseptica RB50 2659719 NP_890090.1 CDS BB3555 NC_002927.3 3774464 3775324 D ortholog of Bordetella pertussis (BX470248) BP0925; fumarylacetoacetate family hydrolase 3774464..3775324 Bordetella bronchiseptica RB50 2659720 NP_890091.1 CDS BB3556 NC_002927.3 3775376 3776272 R ortholog of Bordetella pertussis (BX470248) BP0924; transcriptional regulator complement(3775376..3776272) Bordetella bronchiseptica RB50 2659330 NP_890092.1 CDS BB3557 NC_002927.3 3776314 3777129 R ortholog of Bordetella pertussis (BX470248) BP0923; hypothetical protein complement(3776314..3777129) Bordetella bronchiseptica RB50 2659331 NP_890093.1 CDS BB3558 NC_002927.3 3777242 3778474 D ortholog of Bordetella pertussis (BX470248) BP0922; hypothetical protein 3777242..3778474 Bordetella bronchiseptica RB50 2662036 NP_890094.1 CDS citB NC_002927.3 3778517 3779701 D ortholog of Bordetella pertussis (BX470248) BP0921; citrate utilization protein B 3778517..3779701 Bordetella bronchiseptica RB50 2662037 NP_890095.1 CDS BB3560 NC_002927.3 3779722 3781125 D catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 3779722..3781125 Bordetella bronchiseptica RB50 2660737 NP_890096.1 CDS gabD NC_002927.3 3781176 3782630 R ortholog of Bordetella pertussis (BX470248) BP0919; succinate-semialdehyde dehydrogenase complement(3781176..3782630) Bordetella bronchiseptica RB50 2660738 NP_890097.1 CDS BB3562 NC_002927.3 3782735 3784147 R ortholog of Bordetella pertussis (BX470248) BP0918; hypothetical protein complement(3782735..3784147) Bordetella bronchiseptica RB50 2660739 NP_890098.1 CDS BB3563 NC_002927.3 3784256 3785035 R ortholog of Bordetella pertussis (BX470248) BP0916; taurine ABC transporter ATP-binding protein complement(3784256..3785035) Bordetella bronchiseptica RB50 2661354 NP_890099.1 CDS BB3564 NC_002927.3 3785059 3785886 R ortholog of Bordetella pertussis (BX470248) BP0915; inner membrane component of binding-protein-dependent transport system complement(3785059..3785886) Bordetella bronchiseptica RB50 2661483 NP_890100.1 CDS BB3565 NC_002927.3 3785883 3786755 R ortholog of Bordetella pertussis (BX470248) BP0914; inner membrane component of binding-protein-dependent transport system complement(3785883..3786755) Bordetella bronchiseptica RB50 2659894 NP_890101.1 CDS BB3566 NC_002927.3 3786775 3787749 R ortholog of Bordetella pertussis (BX470248) BP0913; hypothetical protein complement(3786775..3787749) Bordetella bronchiseptica RB50 2660987 NP_890102.1 CDS BB3567 NC_002927.3 3787854 3788855 R ortholog of Bordetella pertussis (BX470248) BP0912; LysR family transcriptional regulator complement(3787854..3788855) Bordetella bronchiseptica RB50 2660988 NP_890103.1 CDS BB3568 NC_002927.3 3789029 3789580 D ortholog of Bordetella pertussis (BX470248) BP0911; decarboxylase 3789029..3789580 Bordetella bronchiseptica RB50 2659619 NP_890104.1 CDS BB3569 NC_002927.3 3789593 3790201 D ortholog of Bordetella pertussis (BX470248) BP0910A; hypothetical protein 3789593..3790201 Bordetella bronchiseptica RB50 2659665 NP_890105.1 CDS BB3570 NC_002927.3 3790228 3791427 D aspartate aminotransferase 3790228..3791427 Bordetella bronchiseptica RB50 2659666 NP_890106.1 CDS BB3571 NC_002927.3 3791424 3793559 D hydantoinase A 3791424..3793559 Bordetella bronchiseptica RB50 2659158 NP_890107.1 CDS BB3572 NC_002927.3 3793556 3795217 D hydantoinase B 3793556..3795217 Bordetella bronchiseptica RB50 2659087 NP_890108.1 CDS BB3573 NC_002927.3 3795288 3796268 D hypothetical protein 3795288..3796268 Bordetella bronchiseptica RB50 2659088 NP_890109.1 CDS BB3574 NC_002927.3 3796265 3797122 D nitroreductase 3796265..3797122 Bordetella bronchiseptica RB50 2661216 NP_890110.1 CDS BB3575 NC_002927.3 3797196 3798566 D efflux protein 3797196..3798566 Bordetella bronchiseptica RB50 2661217 NP_890111.1 CDS BB3576 NC_002927.3 3798678 3800300 R hypothetical protein complement(3798678..3800300) Bordetella bronchiseptica RB50 2661253 NP_890112.1 CDS BB3577 NC_002927.3 3800436 3801290 D hypothetical protein 3800436..3801290 Bordetella bronchiseptica RB50 2661811 NP_890113.1 CDS BB3578 NC_002927.3 3801299 3801739 R ortholog of Bordetella pertussis (BX470248) BP1747; hypothetical protein complement(3801299..3801739) Bordetella bronchiseptica RB50 2661812 NP_890114.1 CDS BB3579 NC_002927.3 3801868 3803097 R ortholog of Bordetella pertussis (BX470248) BP1746; peptidoglycan-binding protein complement(3801868..3803097) Bordetella bronchiseptica RB50 2662195 NP_890115.1 CDS BB3580 NC_002927.3 3803136 3803951 R ortholog of Bordetella pertussis (BX470248) BP1745; hypothetical protein complement(3803136..3803951) Bordetella bronchiseptica RB50 2662196 NP_890116.1 CDS BB3581 NC_002927.3 3804005 3805156 D ortholog of Bordetella pertussis (BX470248) BP1744; hypothetical protein 3804005..3805156 Bordetella bronchiseptica RB50 2662197 NP_890117.1 CDS BB3582 NC_002927.3 3805282 3805752 R ortholog of Bordetella pertussis (BX470248) BP1743; hypothetical protein complement(3805282..3805752) Bordetella bronchiseptica RB50 2661971 NP_890118.1 CDS BB3583 NC_002927.3 3805767 3808055 R ortholog of Bordetella pertussis (BX470248) BP1741; ABC transporter complement(3805767..3808055) Bordetella bronchiseptica RB50 2661972 NP_890119.1 CDS cphA NC_002927.3 3808296 3810935 D catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 3808296..3810935 Bordetella bronchiseptica RB50 2662715 NP_890120.1 CDS cphA NC_002927.3 3811006 3813579 D catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 3811006..3813579 Bordetella bronchiseptica RB50 2662716 NP_890121.1 CDS BB3586 NC_002927.3 3813844 3814044 D ortholog of Bordetella pertussis (BX470248) BP1738; hypothetical protein 3813844..3814044 Bordetella bronchiseptica RB50 2661509 NP_890122.1 CDS BB3587 NC_002927.3 3814076 3814237 D ortholog of Bordetella pertussis (BX470248) BP1737; hypothetical protein 3814076..3814237 Bordetella bronchiseptica RB50 2661510 NP_890123.1 CDS BB3588 NC_002927.3 3814295 3814633 D ortholog of Bordetella pertussis (BX470248) BP1736; hypothetical protein 3814295..3814633 Bordetella bronchiseptica RB50 2661511 NP_890124.1 CDS BB3589 NC_002927.3 3814781 3815662 R ortholog of Bordetella pertussis (BX470248) BP1156; hypothetical protein complement(3814781..3815662) Bordetella bronchiseptica RB50 2659868 NP_890125.1 CDS BB3590 NC_002927.3 3815740 3817119 R ortholog of Bordetella pertussis (BX470248) BP1155; regulatory protein complement(3815740..3817119) Bordetella bronchiseptica RB50 2659869 NP_890126.1 CDS BB3591 NC_002927.3 3817158 3818003 R ortholog of Bordetella pertussis (BX470248) BP1154; hypothetical protein complement(3817158..3818003) Bordetella bronchiseptica RB50 2660827 NP_890127.1 CDS BB3592 NC_002927.3 3818019 3818363 R ortholog of Bordetella pertussis (BX470248) BP1153; hypothetical protein complement(3818019..3818363) Bordetella bronchiseptica RB50 2660828 NP_890128.1 CDS BB3593 NC_002927.3 3818366 3818902 R ortholog of Bordetella pertussis (BX470248) BP1152; hypothetical protein complement(3818366..3818902) Bordetella bronchiseptica RB50 2660967 NP_890129.1 CDS BB3594 NC_002927.3 3819074 3819649 R ortholog of Bordetella pertussis (BX470248) BP1151; hypothetical protein complement(3819074..3819649) Bordetella bronchiseptica RB50 2660968 NP_890130.1 CDS fabG NC_002927.3 3819752 3820489 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(3819752..3820489) Bordetella bronchiseptica RB50 2660969 NP_890131.1 CDS phbC NC_002927.3 3820557 3822194 R ortholog of Bordetella pertussis (BX470248) BP1149; poly-beta-hydroxybutyrate polymerase complement(3820557..3822194) Bordetella bronchiseptica RB50 2660471 NP_890132.1 CDS BB3597 NC_002927.3 3822302 3823057 R ortholog of Bordetella pertussis (BX470248) BP1148; hypothetical protein complement(3822302..3823057) Bordetella bronchiseptica RB50 2660421 NP_890133.1 CDS rluD NC_002927.3 3823045 3824007 R ortholog of Bordetella pertussis (BX470248) BP1147; ribosomal large subunit pseudouridine synthase D complement(3823045..3824007) Bordetella bronchiseptica RB50 2660422 NP_890134.1 CDS comL NC_002927.3 3824109 3824909 D ortholog of Bordetella pertussis (BX470248) BP1146; competence lipoprotein precursor 3824109..3824909 Bordetella bronchiseptica RB50 2659893 NP_890135.1 CDS BB3600 NC_002927.3 3824971 3827046 R ortholog of Bordetella pertussis (BX470248) BP1145; ATP-dependent helicase complement(3824971..3827046) Bordetella bronchiseptica RB50 2660641 NP_890136.1 CDS tex NC_002927.3 3827211 3829586 D ortholog of Bordetella pertussis (BX470248) BP1144; transcription accessory protein 3827211..3829586 Bordetella bronchiseptica RB50 2658958 NP_890137.1 CDS trpS NC_002927.3 3829667 3831022 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(3829667..3831022) Bordetella bronchiseptica RB50 2658959 NP_890138.1 CDS BB3603 NC_002927.3 3831082 3831408 R ortholog of Bordetella pertussis (BX470248) BP1141; iron uptake protein complement(3831082..3831408) Bordetella bronchiseptica RB50 2659219 NP_890139.1 CDS BB3604 NC_002927.3 3831413 3833047 R ortholog of Bordetella pertussis (BX470248) BP1140; iron uptake protein complement(3831413..3833047) Bordetella bronchiseptica RB50 2659220 NP_890140.1 CDS BB3605 NC_002927.3 3833044 3833352 R ortholog of Bordetella pertussis (BX470248) BP1139; iron uptake protein complement(3833044..3833352) Bordetella bronchiseptica RB50 2662008 NP_890141.1 CDS BB3606 NC_002927.3 3833598 3834599 D Similar to Escherichia coli shufflon-specific DNA recombinase rcI SWALL:RCI1_ECOLI (SWALL:P10487) (384 aa) fasta scores: E(): 8.4e-10, 37.03% id in 324 aa, and to Xanthomonas axonopodis shufflon-specific recombinase rci or xac2418 SWALL:AAM37269 (EMBL:AE011879) (315 aa) fasta scores: E(): 2.1e-51, 48.88% id in 313 aa; shufflon-specific DNA recombinase 3833598..3834599 Bordetella bronchiseptica RB50 2659773 NP_890142.1 CDS BB3607 NC_002927.3 3834602 3835393 R Similar to Chlorella virus NC-1A modification methylase cvibi cvibiM SWALL:MTC1_CHVN1 (SWALL:Q01511) (260 aa) fasta scores: E(): 3.4e-13, 28.84% id in 260 aa, and to Bacteriophage phiE125 gp27 27 SWALL:Q8W6S4 (EMBL:AF447491) (262 aa) fasta scores: E(): 3.5e-81, 68.82% id in 263 aa; modification methylase complement(3834602..3835393) Bordetella bronchiseptica RB50 2661794 NP_890143.1 CDS BB3608 NC_002927.3 3835568 3835921 R Similar to Ralstonia solanacearum tail fiber assembly-like protein rsc1920 or rs03489 SWALL:Q8XY43 (EMBL:AL646067) (250 aa) fasta scores: E(): 2.8, 29.8% id in 104 aa, and to Yersinia pestis lambda tail fiber assembly protein g y1053 or ypmt1.03C SWALL:O68721 (EMBL:AF074611) (202 aa) fasta scores: E(): 0.6, 29.12% id in 103 aa; tail fiber assembly protein complement(3835568..3835921) Bordetella bronchiseptica RB50 2661795 NP_890144.1 CDS BB3609 NC_002927.3 3835918 3836172 R no significant database matches; hypothetical protein complement(3835918..3836172) Bordetella bronchiseptica RB50 2662151 NP_890145.1 CDS BB3610 NC_002927.3 3836175 3836975 R Similar to Yersinia pestis bacteriophage tail fiber protein stf or ypo1252 SWALL:Q8ZGN4 (EMBL:AJ414147) (259 aa) fasta scores: E(): 0.013, 30% id in 140 aa; hypothetical protein complement(3836175..3836975) Bordetella bronchiseptica RB50 2662152 NP_890146.1 CDS BB3611 NC_002927.3 3836972 3837550 R Similar to Bacteriophage SfV tail protein orf20 SWALL:O22003 (EMBL:U82619) (194 aa) fasta scores: E(): 1.3e-08, 30.3% id in 198 aa, and to Neisseria meningitidis hypothetical protein Nma1324 nma1324 SWALL:Q9JUG4 (EMBL:AL162755) (186 aa) fasta scores: E(): 2.3e-26, 43.85% id in 187 aa; phage tail protein complement(3836972..3837550) Bordetella bronchiseptica RB50 2662153 NP_890147.1 CDS BB3612 NC_002927.3 3837547 3838617 R Similar to Bacteriophage SfV tail protein orf19 SWALL:Q8SBG4 (EMBL:U82619) (352 aa) fasta scores: E(): 4.5e-16, 30.44% id in 335 aa, and to Neisseria meningitidis hypothetical protein Nma1323 nma1323 SWALL:Q9JUG5 (EMBL:AL162755) (351 aa) fasta scores: E(): 4.4e-55, 47.14% id in 350 aa; phage tail protein complement(3837547..3838617) Bordetella bronchiseptica RB50 2662154 NP_890148.1 CDS BB3613 NC_002927.3 3838614 3838964 R Similar to Neisseria meningitidis hypothetical protein Nma1322 nma1322 SWALL:Q9JUG6 (EMBL:AL162755) (115 aa) fasta scores: E(): 8.8e-20, 54.31% id in 116 aa, and to Haemophilus influenzae mu-like prophage flumu protein gp46 hi1519 SWALL:VG46_HAEIN (SWALL:P44239) (135 aa) fasta scores: E(): 0.02, 36% id in 100 aa; hypothetical protein complement(3838614..3838964) Bordetella bronchiseptica RB50 2661074 NP_890149.1 CDS BB3614 NC_002927.3 3839028 3839669 R Similar to Neisseria meningitidis hypothetical protein nma1321 nma1321 or nmb1111 SWALL:Q9JQQ9 (EMBL:AL162755) (222 aa) fasta scores: E(): 7.4e-29, 43.06% id in 209 aa, and to Bacteriophage Mu protein gp45 45 SWALL:VG45_BPMU (SWALL:Q9T1V4) (197 aa) fasta scores: E(): 3.9e-06, 30.37% id in 214 aa; hypothetical protein complement(3839028..3839669) Bordetella bronchiseptica RB50 2661075 NP_890150.1 CDS BB3615 NC_002927.3 3839659 3840762 R Similar to Bacteriophage SfV tail protein orf16 SWALL:Q8SBG7 (EMBL:U82619) (359 aa) fasta scores: E(): 1.6e-13, 27.02% id in 370 aa, and to Neisseria meningitidis hypothetical protein nma1830 nma1830 or rth43 SWALL:Q9JRB5 (EMBL:AL162757) (379 aa) fasta scores: E(): 1.9e-68, 53.16% id in 348 aa; phage tail protein complement(3839659..3840762) Bordetella bronchiseptica RB50 2661076 NP_890151.1 CDS BB3616 NC_002927.3 3840746 3842005 R Similar to Bacteriophage SfV tail/DNA circulation protein orf15 SWALL:Q8SBG8 (EMBL:U82619) (447 aa) fasta scores: E(): 1.2e-08, 25.29% id in 431 aa, and to Neisseria meningitidis hypothetical protein nma1831 nma1831 or rth42 SWALL:Q9JR33 (EMBL:AL162757) (455 aa) fasta scores: E(): 2.1e-32, 35.89% id in 468 aa; hypothetical protein complement(3840746..3842005) Bordetella bronchiseptica RB50 2659873 NP_890152.1 CDS BB3617 NC_002927.3 3842005 3844209 R Similar to Neisseria meningitidis hypothetical DNA-binding protein nma1833 or rth40 SWALL:Q9JQZ6 (EMBL:AL162757) (559 aa) fasta scores: E(): 9.2e-48, 36.51% id in 545 aa, and to Salmonella typhi bacteriophage protein sty1629 SWALL:Q8Z6T7 (EMBL:AL627270) (821 aa) fasta scores: E(): 1.8e-05, 23.12% id in 614 aa; hypothetical protein complement(3842005..3844209) Bordetella bronchiseptica RB50 2659874 NP_890153.1 CDS BB3618 NC_002927.3 3844216 3844356 R no significant database matches; hypothetical protein complement(3844216..3844356) Bordetella bronchiseptica RB50 2659875 NP_890154.1 CDS BB3619 NC_002927.3 3844353 3844745 R Similar to Neisseria meningitidis hypothetical protein nma1835 nma1835 or rth39 SWALL:Q9JQN5 (EMBL:AL162757) (129 aa) fasta scores: E(): 0.00012, 35.18% id in 108 aa; hypothetical protein complement(3844353..3844745) Bordetella bronchiseptica RB50 2659876 NP_890155.1 CDS BB3620 NC_002927.3 3844742 3845116 R Similar to Neisseria meningitidis hypothetical protein Nmb1105 nmb1105 SWALL:Q9JZD3 (EMBL:AE002460) (125 aa) fasta scores: E(): 1.5e-22, 50.4% id in 125 aa, and to Neisseria meningitidis hypothetical protein nma1840 nma1840 or rth36 SWALL:Q9JR01 (EMBL:AL162757) (124 aa) fasta scores: E(): 3.5e-18, 48.76% id in 121 aa; hypothetical protein complement(3844742..3845116) Bordetella bronchiseptica RB50 2659877 NP_890156.1 CDS BB3621 NC_002927.3 3845132 3846559 R Similar to Haemophilus influenzae mu-like prophage flumu tail sheath protein hi1511 SWALL:VPL_HAEIN (SWALL:P44233) (487 aa) fasta scores: E(): 3e-32, 33.6% id in 491 aa, and to Neisseria meningitidis hypothetical protein nma1841 nma1841 or rth35 SWALL:Q9JRG0 (EMBL:AL162757) (475 aa) fasta scores: E(): 1.5e-76, 52.41% id in 477 aa; phage tail sheath protein complement(3845132..3846559) Bordetella bronchiseptica RB50 2661574 NP_890157.1 CDS BB3622 NC_002927.3 3846565 3846747 R Similar to Neisseria meningitidis hypothetical protein Nma1842 nma1842 SWALL:Q9JTD3 (EMBL:AL162757) (62 aa) fasta scores: E(): 2.4e-05, 47.45% id in 59 aa, and to Neisseria meningitidis hypothetical protein Nmb1103 nmb1103 SWALL:Q9JZD5 (EMBL:AE002460) (65 aa) fasta scores: E(): 0.14, 37.28% id in 59 aa; hypothetical protein complement(3846565..3846747) Bordetella bronchiseptica RB50 2661575 NP_890158.1 CDS BB3623 NC_002927.3 3846747 3847442 R Similar to Neisseria meningitidis hypothetical protein nma1843 nma1843 or rth34 SWALL:Q9JQN9 (EMBL:AL162757) (222 aa) fasta scores: E(): 8.7e-24, 41.42% id in 210 aa, and to Neisseria meningitidis hypothetical protein Nmb1102 nmb1102 SWALL:Q9JZD6 (EMBL:AE002460) (197 aa) fasta scores: E(): 2.2e-15, 39.34% id in 183 aa; hypothetical protein complement(3846747..3847442) Bordetella bronchiseptica RB50 2661576 NP_890159.1 CDS BB3624 NC_002927.3 3847439 3847870 R Similar to Neisseria meningitidis hypothetical protein Nmb1101 nmb1101 SWALL:Q9JZD7 (EMBL:AE002460) (140 aa) fasta scores: E(): 3.3e-17, 44.52% id in 137 aa, and to Bacteriophage Mu protein gp36 36 SWALL:VG36_BPMU (SWALL:Q9T1V9) (141 aa) fasta scores: E(): 0.012, 26.92% id in 130 aa; hypothetical protein complement(3847439..3847870) Bordetella bronchiseptica RB50 2661577 NP_890160.1 CDS BB3625 NC_002927.3 3847968 3848240 R no significant database matches; hypothetical protein complement(3847968..3848240) Bordetella bronchiseptica RB50 2660813 NP_890161.1 CDS BB3626 NC_002927.3 3848312 3849259 R Similar to Salmonella typhi hypothetical protein Sty1620 sty1620 SWALL:Q8Z6U6 (EMBL:AL627270) (317 aa) fasta scores: E(): 1.4e-22, 29.56% id in 318 aa; hypothetical protein complement(3848312..3849259) Bordetella bronchiseptica RB50 2660814 NP_890162.1 CDS BB3627 NC_002927.3 3849315 3849674 R Similar to Salmonella typhi membrane protein sty1621 SWALL:Q8Z6U5 (EMBL:AL627270) (112 aa) fasta scores: E(): 3.9e-05, 35.29% id in 102 aa; hypothetical protein complement(3849315..3849674) Bordetella bronchiseptica RB50 2660815 NP_890163.1 CDS BB3628 NC_002927.3 3849720 3850727 R Similar to Salmonella typhi hypothetical protein Sty1619 sty1619 SWALL:Q8Z6U7 (EMBL:AL627270) (371 aa) fasta scores: E(): 3.3e-20, 32.97% id in 370 aa; hypothetical protein complement(3849720..3850727) Bordetella bronchiseptica RB50 2660816 NP_890164.1 CDS BB3629 NC_002927.3 3850962 3851519 R Similar to Haemophilus influenzae mu-like prophage flumu g protein 2 hi1568 SWALL:VPG2_HAEIN (SWALL:P45255) (138 aa) fasta scores: E(): 4.5e-06, 39% id in 100 aa, and to Neisseria meningitidis hypothetical protein nma1849 nma1849 or rth29 SWALL:Q9JR88 (EMBL:AL162757) (165 aa) fasta scores: E(): 2.4e-09, 32.63% id in 190 aa; hypothetical protein complement(3850962..3851519) Bordetella bronchiseptica RB50 2660817 NP_890165.1 CDS BB3630 NC_002927.3 3851661 3853001 R Similar to Bacteriophage Mu f protein f or 30 SWALL:VPF_BPMU (SWALL:Q01259) (439 aa) fasta scores: E(): 2.4e-39, 34.06% id in 455 aa, and to Escherichia coli O157:H7 hypothetical protein Ecs4971 ecs4971 SWALL:Q8X313 (EMBL:AP002567) (441 aa) fasta scores: E(): 1.9e-40, 33.7% id in 454 aa; hypothetical protein complement(3851661..3853001) Bordetella bronchiseptica RB50 2660429 NP_890166.1 CDS BB3631 NC_002927.3 3852994 3854529 R Similar to Bacteriophage Mu protein gp29 29 SWALL:VG29_BPMU (SWALL:Q9T1W5) (512 aa) fasta scores: E(): 1.5e-22, 28.6% id in 472 aa, and to Neisseria meningitidis hypothetical protein Nma1851 nma1851 SWALL:Q9JTD2 (EMBL:AL162757) (519 aa) fasta scores: E(): 2.5e-24, 27.33% id in 472 aa; hypothetical protein complement(3852994..3854529) Bordetella bronchiseptica RB50 2660430 NP_890167.1 CDS BB3632 NC_002927.3 3854529 3856211 R Similar to Bacteriophage Mu protein gp28 28 SWALL:VG28_BPMU (SWALL:Q9T1W6) (551 aa) fasta scores: E(): 1.6e-66, 40.15% id in 533 aa, and to Escherichia coli O157:H7 portal protein ecs4969 SWALL:Q8X315 (EMBL:AP002567) (554 aa) fasta scores: E(): 2.2e-66, 38.3% id in 530 aa; hypothetical protein complement(3854529..3856211) Bordetella bronchiseptica RB50 2660431 NP_890168.1 CDS BB3633 NC_002927.3 3856211 3856762 R Similar to Haemophilus influenzae mu-like prophage flumu protein gp27 hi1499 SWALL:VG27_HAEIN (SWALL:P44223) (189 aa) fasta scores: E(): 0.00053, 27.95% id in 186 aa, and to Bacteriophage Mu protein gp27 27 SWALL:VG27_BPMU (SWALL:Q9T1W7) (191 aa) fasta scores: E(): 0.0043, 26.34% id in 186 aa; hypothetical protein complement(3856211..3856762) Bordetella bronchiseptica RB50 2660432 NP_890169.1 CDS BB3634 NC_002927.3 3856766 3857065 R Similar to Bacteriophage Mu hypothetical protein gp26 26 SWALL:VG26_BPMU (SWALL:Q9T1W8) (96 aa) fasta scores: E(): 8.5e-13, 51.11% id in 90 aa, and to Escherichia coli O157:H7 hypothetical protein Ecs4967 ecs4967 SWALL:Q8X317 (EMBL:AP002567) (96 aa) fasta scores: E(): 4.1e-12, 48.93% id in 94 aa; hypothetical protein complement(3856766..3857065) Bordetella bronchiseptica RB50 2660433 NP_890170.1 CDS BB3635 NC_002927.3 3857076 3857372 R no significant database matches; hypothetical protein complement(3857076..3857372) Bordetella bronchiseptica RB50 2661529 NP_890171.1 CDS BB3636 NC_002927.3 3857369 3857464 R no significant database matches; hypothetical protein complement(3857369..3857464) Bordetella bronchiseptica RB50 2661530 NP_890172.1 CDS BB3637 NC_002927.3 3857475 3857891 R no significant database matches; hypothetical protein complement(3857475..3857891) Bordetella bronchiseptica RB50 2661531 NP_890173.1 CDS BB3638 NC_002927.3 3857888 3858523 R Similar to Escherichia coli soluble lytic murein transglycosylase precursor slt or slty or b4392 SWALL:SLT_ECOLI (SWALL:P03810) (645 aa) fasta scores: E(): 0.00016, 28.49% id in 179 aa, and to Salmonella typhimurium soluble lytic murein transglycosylase stm4217 SWALL:Q8ZKI8 (EMBL:AE008897) (201 aa) fasta scores: E(): 4.2e-47, 60.93% id in 192 aa; lytic murein transglycosylase precursor complement(3857888..3858523) Bordetella bronchiseptica RB50 2659488 NP_890174.1 CDS BB3639 NC_002927.3 3858523 3858903 R Similar to Salmonella typhi hypothetical protein Sty1608 SWALL:Q8Z6V8 (EMBL:AL627270) (116 aa) fasta scores: E(): 8.5e-16, 54.63% id in 108 aa, and to Salmonella typhimurium inner membrane protein stm4218 SWALL:Q8ZKI7 (EMBL:AE008897) (95 aa) fasta scores: E(): 1.3e-09, 47.27% id in 110 aa; phage-related membrane protein complement(3858523..3858903) Bordetella bronchiseptica RB50 2659489 NP_890175.1 CDS BB3640 NC_002927.3 3859012 3859440 R no significant database matches; hypothetical protein complement(3859012..3859440) Bordetella bronchiseptica RB50 2660452 NP_890176.1 CDS BB3641 NC_002927.3 3859489 3860100 R Similar to Escherichia coli O157:H7 hypothetical 24.2 kDa protein z2968 or ecs2619 SWALL:Q8XBI0 (EMBL:AE005412) (216 aa) fasta scores: E(): 2.9e-10, 34.22% id in 149 aa; hypothetical protein complement(3859489..3860100) Bordetella bronchiseptica RB50 2660453 NP_890177.1 CDS BB3642 NC_002927.3 3860104 3860469 R Similar to Xanthomonas campestris phage-related protein z2969 or xcc2997 SWALL:AAM42269 (EMBL:AE012413) (142 aa) fasta scores: E(): 8.4e-07, 41.12% id in 124 aa; hypothetical protein complement(3860104..3860469) Bordetella bronchiseptica RB50 2660454 NP_890178.1 CDS BB3643 NC_002927.3 3860646 3860870 D Similar to Neisseria meningitidis hypothetical protein Nmb1004 nmb1004 SWALL:Q9JZL2 (EMBL:AE002451) (81 aa) fasta scores: E(): 0.65, 33.33% id in 60 aa; hypothetical protein 3860646..3860870 Bordetella bronchiseptica RB50 2658965 NP_890179.1 CDS BB3644 NC_002927.3 3860989 3861507 D no significant database matches; hypothetical protein 3860989..3861507 Bordetella bronchiseptica RB50 2658966 NP_890180.1 CDS BB3645 NC_002927.3 3861504 3861809 D Similar to Neisseria meningitidis hypothetical protein Nmb1003 nmb1003 SWALL:Q9JZL3 (EMBL:AE002451) (98 aa) fasta scores: E(): 2.3e-10, 40.42% id in 94 aa; hypothetical protein 3861504..3861809 Bordetella bronchiseptica RB50 2658967 NP_890181.1 CDS BB3646 NC_002927.3 3861828 3862721 D Similar to Neisseria meningitidis hypothetical protein Nmb1002 nmb1002 SWALL:Q9JZL4 (EMBL:AE002451) (291 aa) fasta scores: E(): 1.2e-22, 34.92% id in 272 aa, and to Salmonella typhi hypothetical protein Sty1606 sty1606 SWALL:Q8Z6W0 (EMBL:AL627270) (143 aa) fasta scores: E(): 1.2e-17, 53.9% id in 141 aa; hypothetical protein 3861828..3862721 Bordetella bronchiseptica RB50 2658968 NP_890182.1 CDS BB3647 NC_002927.3 3862724 3864499 D Similar to Salmonella typhi hypothetical protein Sty1604 sty1604 SWALL:Q8Z6W2 (EMBL:AL627270) (589 aa) fasta scores: E(): 2.3e-114, 51.36% id in 586 aa, and to Vibrio cholerae hypothetical protein Vc1799 vc1799 SWALL:Q9KR47 (EMBL:AE004256) (585 aa) fasta scores: E(): 5.4e-48, 34.57% id in 564 aa; hypothetical protein 3862724..3864499 Bordetella bronchiseptica RB50 2661220 NP_890183.1 CDS eha NC_002927.3 3864510 3865694 D Similar to Salmonella typhi Eha SWALL:O87649 (EMBL:AF091717) (322 aa) fasta scores: E(): 2.1e-41, 56.19% id in 226 aa, and to Vibrio cholerae Eha protein vc1798 SWALL:Q9KR48 (EMBL:AE004256) (383 aa) fasta scores: E(): 9.1e-23, 34.66% id in 375 aa; hypothetical protein 3864510..3865694 Bordetella bronchiseptica RB50 2659643 NP_890184.1 CDS BB3649 NC_002927.3 3865685 3866005 D no significant database matches; hypothetical protein 3865685..3866005 Bordetella bronchiseptica RB50 2659644 NP_890185.1 CDS BB3650 NC_002927.3 3865999 3866202 D no significant database matches; hypothetical protein 3865999..3866202 Bordetella bronchiseptica RB50 2659645 NP_890186.1 CDS BB3651 NC_002927.3 3866202 3866807 D Similar to Neisseria meningitidis hypothetical protein Nma1874 nma1874 SWALL:Q9JTC5 (EMBL:AL162757) (125 aa) fasta scores: E(): 1.6e-07, 34.48% id in 116 aa; hypothetical protein 3866202..3866807 Bordetella bronchiseptica RB50 2661240 NP_890187.1 CDS BB3652 NC_002927.3 3866804 3867424 D Similar to Neisseria meningitidis hypothetical protein nma1871 nma1871 or rth11 SWALL:Q9JRE4 (EMBL:AL162757) (203 aa) fasta scores: E(): 5.4e-33, 52.55% id in 196 aa; hypothetical protein 3866804..3867424 Bordetella bronchiseptica RB50 2661241 NP_890188.1 CDS hup NC_002927.3 3867544 3867825 D Similar to Streptococcus thermophilus DNA-binding protein Hu Hup or HstH SWALL:DBH_STRTR (SWALL:P96045) (91 aa) fasta scores: E(): 6.4e-11, 48.27% id in 87 aa, and to Lactococcus lactis HllA hllA SWALL:AAK08222 (EMBL:AF320916) (91 aa) fasta scores: E(): 3.7e-12, 48.27% id in 87 aa; histone-like DNA-binding protein 3867544..3867825 Bordetella bronchiseptica RB50 2661242 NP_890189.1 CDS BB3654 NC_002927.3 3867922 3868287 D Similar to Pseudomonas phage phiKZ phikz184 SWALL:Q8SCX8 (EMBL:AF399011) (230 aa) fasta scores: E(): 0.0036, 33.04% id in 115 aa; hypothetical protein 3867922..3868287 Bordetella bronchiseptica RB50 2661243 NP_890190.1 CDS BB3655 NC_002927.3 3868367 3868783 D Similar to Caenorhabditis elegans K11e8.1B protein k11e8.1B SWALL:O62304 (EMBL:Z70279) (137 aa) fasta scores: E(): 7.2, 27.67% id in 112 aa; hypothetical protein 3868367..3868783 Bordetella bronchiseptica RB50 2662049 NP_890191.1 CDS BB3656 NC_002927.3 3868788 3869378 D Similar to Bacteriophage Mu protein gp16 16 or e16 or gemA SWALL:VG16_BPMU (SWALL:Q38494) (183 aa) fasta scores: E(): 4.7e-11, 32.96% id in 179 aa, and to Salmonella typhi hypothetical protein Sty1592 sty1592 SWALL:Q8Z6X2 (EMBL:AL627270) (150 aa) fasta scores: E(): 3.8e-20, 51.14% id in 131 aa; hypothetical protein 3868788..3869378 Bordetella bronchiseptica RB50 2662050 NP_890192.1 CDS BB3657 NC_002927.3 3869380 3869742 D Similar to Salmonella typhi bacteriophage transcriptional regulator sty1591 SWALL:Q8Z6X3 (EMBL:AL627270) (129 aa) fasta scores: E(): 6.7e-07, 32.4% id in 108 aa, and to Erwinia carotovora DNA-binding protein RdgB rdgB SWALL:RDGB_ERWCA (SWALL:Q47588) (117 aa) fasta scores: E(): 0.033, 25.49% id in 102 aa; phage-related DNA-binding protein 3869380..3869742 Bordetella bronchiseptica RB50 2662051 NP_890193.1 CDS bfrH NC_002927.3 3869831 3872335 R ortholog of Bordetella pertussis (BX470248) BP1138; ferric siderophore receptor complement(3869831..3872335) Bordetella bronchiseptica RB50 2662052 NP_890194.1 CDS fecR NC_002927.3 3872429 3873391 R ortholog of Bordetella pertussis (BX470248) BP1137; signal transduction protein complement(3872429..3873391) Bordetella bronchiseptica RB50 2662638 NP_890195.1 CDS fecI NC_002927.3 3873384 3873917 R ortholog of Bordetella pertussis (BX470248) BP1136; ECF family RNA polymerase sigma factor complement(3873384..3873917) Bordetella bronchiseptica RB50 2662639 NP_890196.1 CDS tauD NC_002927.3 3874177 3875025 D ortholog of Bordetella pertussis (BX470248) BP1135; alpha-ketoglutarate-dependent taurine dioxygenase 3874177..3875025 Bordetella bronchiseptica RB50 2662596 NP_890197.1 CDS BB3662 NC_002927.3 3875022 3875744 D ortholog of Bordetella pertussis (BX470248) BP1132; short-chain dehydrogenase 3875022..3875744 Bordetella bronchiseptica RB50 2662597 NP_890198.1 CDS BB3663 NC_002927.3 3875799 3876782 D ortholog of Bordetella pertussis (BX470248) BP1131; hypothetical protein 3875799..3876782 Bordetella bronchiseptica RB50 2661441 NP_890199.1 CDS BB3664 NC_002927.3 3876810 3877712 R ortholog of Bordetella pertussis (BX470248) BP1129; LysR family transcriptional regulator complement(3876810..3877712) Bordetella bronchiseptica RB50 2661442 NP_890200.1 CDS fabG NC_002927.3 3877800 3878558 D ortholog of Bordetella pertussis (BX470248) BP1128; 3-oxoacyl-ACP reductase 3877800..3878558 Bordetella bronchiseptica RB50 2659475 NP_890201.1 CDS BB3666 NC_002927.3 3878571 3879719 R ortholog of Bordetella pertussis (BX470248) BP1127; hypothetical protein complement(3878571..3879719) Bordetella bronchiseptica RB50 2659476 NP_890202.1 CDS odhL NC_002927.3 3879760 3881187 R E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(3879760..3881187) Bordetella bronchiseptica RB50 2660751 NP_890203.1 CDS odhB NC_002927.3 3881417 3882637 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(3881417..3882637) Bordetella bronchiseptica RB50 2659581 NP_890204.1 CDS sucA NC_002927.3 3882683 3885553 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(3882683..3885553) Bordetella bronchiseptica RB50 2659790 NP_890205.1 CDS BB3670 NC_002927.3 3885878 3887959 R ortholog of Bordetella pertussis (BX470248) BP1123; hypothetical protein complement(3885878..3887959) Bordetella bronchiseptica RB50 2659463 NP_890206.1 CDS BB3671 NC_002927.3 3887962 3888513 R ortholog of Bordetella pertussis (BX470248) BP1122; transcription regulator AsnC complement(3887962..3888513) Bordetella bronchiseptica RB50 2659464 NP_890207.1 CDS aceE NC_002927.3 3888573 3891269 D paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 3888573..3891269 Bordetella bronchiseptica RB50 2659570 NP_890208.1 CDS maeB NC_002927.3 3891399 3893705 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 3891399..3893705 Bordetella bronchiseptica RB50 2659571 NP_890209.1 CDS fim2 NC_002927.3 3893880 3894515 D ortholog of Bordetella pertussis (BX470248) BP1119; serotype 2 fimbrial subunit precursor 3893880..3894515 Bordetella bronchiseptica RB50 2660489 NP_890210.1 CDS BB3675 NC_002927.3 3894626 3895078 D inner membrane protein 3894626..3895078 Bordetella bronchiseptica RB50 2660776 NP_890211.1 CDS BB3676 NC_002927.3 3895094 3896245 R ortholog of Bordetella pertussis (BX470248) BP2356; hypothetical protein complement(3895094..3896245) Bordetella bronchiseptica RB50 2660777 NP_890212.1 CDS gltA NC_002927.3 3896295 3897605 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(3896295..3897605) Bordetella bronchiseptica RB50 2659626 NP_890213.1 CDS BB3678 NC_002927.3 3897626 3897886 R ortholog of Bordetella pertussis (BX470248) BP2359; hypothetical protein complement(3897626..3897886) Bordetella bronchiseptica RB50 2659622 NP_890214.1 CDS sdhB NC_002927.3 3897912 3898628 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(3897912..3898628) Bordetella bronchiseptica RB50 2659623 NP_890215.1 CDS sdhA NC_002927.3 3898641 3900419 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(3898641..3900419) Bordetella bronchiseptica RB50 2659682 NP_890216.1 CDS sdhD NC_002927.3 3900423 3900806 R ortholog of Bordetella pertussis (BX470248) BP2362; succinate dehydrogenase hydrophobic membrane anchor protein complement(3900423..3900806) Bordetella bronchiseptica RB50 2659106 NP_890217.1 CDS sdhC NC_002927.3 3900806 3901219 R ortholog of Bordetella pertussis (BX470248) BP2363; succinate dehydrogenase cytochrome B subunit complement(3900806..3901219) Bordetella bronchiseptica RB50 2662221 NP_890218.1 CDS BB3683 NC_002927.3 3901344 3902123 R ortholog of Bordetella pertussis (BX470248) BP2364; GntR family transcriptional regulator complement(3901344..3902123) Bordetella bronchiseptica RB50 2659042 NP_890219.1 CDS mdH NC_002927.3 3902412 3903401 D catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 3902412..3903401 Bordetella bronchiseptica RB50 2659043 NP_890220.1 CDS prpB NC_002927.3 3903663 3904556 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 3903663..3904556 Bordetella bronchiseptica RB50 2661162 NP_890221.1 CDS prpC NC_002927.3 3904630 3905832 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 3904630..3905832 Bordetella bronchiseptica RB50 2661163 NP_890222.2 CDS acnA NC_002927.3 3905951 3908545 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 3905951..3908545 Bordetella bronchiseptica RB50 2662010 NP_890223.1 CDS BB3688 NC_002927.3 3908602 3909792 D ortholog of Bordetella pertussis (BX470248) BP2370; hypothetical protein 3908602..3909792 Bordetella bronchiseptica RB50 2659302 NP_890224.1 CDS prpD NC_002927.3 3909810 3911267 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 3909810..3911267 Bordetella bronchiseptica RB50 2659303 NP_890225.1 CDS BB3690 NC_002927.3 3911289 3911759 D ortholog of Bordetella pertussis (BX470248) BP2372; inner membrane protein 3911289..3911759 Bordetella bronchiseptica RB50 2659104 NP_890226.1 CDS BB3691 NC_002927.3 3911789 3913288 D ortholog of Bordetella pertussis (BX470248) BP2373; hypothetical protein 3911789..3913288 Bordetella bronchiseptica RB50 2659105 NP_890227.1 CDS BB3692 NC_002927.3 3913504 3913686 D ortholog of Bordetella pertussis (BX470248) BP2374; hypothetical protein 3913504..3913686 Bordetella bronchiseptica RB50 2661235 NP_890228.1 CDS BB3693 NC_002927.3 3913820 3914350 D ortholog of Bordetella pertussis (BX470248) BP2375; hypothetical protein 3913820..3914350 Bordetella bronchiseptica RB50 2661236 NP_890229.1 CDS BB3694 NC_002927.3 3914416 3915288 D ortholog of Bordetella pertussis (BX470248) BP2376; hypothetical protein 3914416..3915288 Bordetella bronchiseptica RB50 2659492 NP_890230.1 CDS BB3695 NC_002927.3 3915426 3917090 D ortholog of Bordetella pertussis (BX470248) BP2377; AMP-binding protein 3915426..3917090 Bordetella bronchiseptica RB50 2659493 NP_890231.1 CDS BB3696 NC_002927.3 3917102 3917623 D ortholog of Bordetella pertussis (BX470248) BP2378; transferase 3917102..3917623 Bordetella bronchiseptica RB50 2659961 NP_890232.1 CDS BB3697 NC_002927.3 3917673 3918593 D ortholog of Bordetella pertussis (BX470248) BP2379; chaperonin 3917673..3918593 Bordetella bronchiseptica RB50 2659854 NP_890233.1 CDS BB3698 NC_002927.3 3918670 3919422 D ortholog of Bordetella pertussis (BX470248) BP2380; tight adherance protein E 3918670..3919422 Bordetella bronchiseptica RB50 2659855 NP_890234.1 CDS BB3699 NC_002927.3 3919826 3920305 R ortholog of Bordetella pertussis (BX470248) BP2382; hypothetical protein complement(3919826..3920305) Bordetella bronchiseptica RB50 2659432 NP_890235.1 CDS BB3700 NC_002927.3 3920355 3921110 R ortholog of Bordetella pertussis (BX470248) BP2383; hypothetical protein complement(3920355..3921110) Bordetella bronchiseptica RB50 2659433 NP_890236.1 CDS BB3701 NC_002927.3 3921320 3922885 D ortholog of Bordetella pertussis (BX470248) BP2384; transcriptional regulator 3921320..3922885 Bordetella bronchiseptica RB50 2660401 NP_890237.1 CDS ftsB NC_002927.3 3922946 3923302 R forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB complement(3922946..3923302) Bordetella bronchiseptica RB50 2659552 NP_890238.1 CDS eno NC_002927.3 3923384 3924670 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(3923384..3924670) Bordetella bronchiseptica RB50 2659553 NP_890239.1 CDS BB3704 NC_002927.3 3924676 3924960 R ortholog of Bordetella pertussis (BX470248) BP2387; hypothetical protein complement(3924676..3924960) Bordetella bronchiseptica RB50 2659891 NP_890240.1 CDS kdsA NC_002927.3 3924970 3925827 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(3924970..3925827) Bordetella bronchiseptica RB50 2659892 NP_890241.1 CDS pyrG NC_002927.3 3925824 3927476 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3925824..3927476) Bordetella bronchiseptica RB50 2661376 NP_890242.1 CDS BB3707 NC_002927.3 3927692 3929491 R ortholog of Bordetella pertussis (BX470248) BP2391; aminopeptidase complement(3927692..3929491) Bordetella bronchiseptica RB50 2659804 NP_890243.1 CDS BB3708 NC_002927.3 3929500 3930318 R ortholog of Bordetella pertussis (BX470248) BP2392; transporter complement(3929500..3930318) Bordetella bronchiseptica RB50 2659880 NP_890244.1 CDS BB3709 NC_002927.3 3930345 3931493 R ortholog of Bordetella pertussis (BX470248) BP2393; Similar to Ochrobactrum anthropi D-aminopeptidase dmpA SWALL:Q59632 (EMBL:X97669) (375 aa) fasta scores: E(): 1.9e-33, 37.7% id in 358 aa, and to Ralstonia solanacearum probable D-aminopeptidase rsc1383 or rs04666 SWALL:Q8XZL2 (EMBL:AL646064) (341 aa) fasta scores: E(): 6.4e-84, 69.43% id in 337 aa; D-aminopeptidase complement(3930345..3931493) Bordetella bronchiseptica RB50 2659881 NP_890245.1 CDS BB3710 NC_002927.3 3931511 3932410 R ortholog of Bordetella pertussis (BX470248) BP2394; binding-protein-dependent transport permease complement(3931511..3932410) Bordetella bronchiseptica RB50 2659921 NP_890246.1 CDS BB3711 NC_002927.3 3932418 3933338 R ortholog of Bordetella pertussis (BX470248) BP2395; binding-protein-dependent transport permease complement(3932418..3933338) Bordetella bronchiseptica RB50 2659922 NP_890247.1 CDS BB3712 NC_002927.3 3933400 3934953 R ortholog of Bordetella pertussis (BX470248) BP2396; glutathione ABC transporter substrate-binding protein complement(3933400..3934953) Bordetella bronchiseptica RB50 2659423 NP_890248.1 CDS BB3713 NC_002927.3 3935024 3936925 R ortholog of Bordetella pertussis (BX470248) BP2397; ABC transporter ATP-binding protein complement(3935024..3936925) Bordetella bronchiseptica RB50 2659424 NP_890249.1 CDS BB3714 NC_002927.3 3936970 3937950 R ortholog of Bordetella pertussis (BX470248) BP2398; L-asparaginase complement(3936970..3937950) Bordetella bronchiseptica RB50 2659533 NP_890250.1 CDS BB3715 NC_002927.3 3937947 3938831 R ortholog of Bordetella pertussis (BX470248) BP2399; transcriptional regulator complement(3937947..3938831) Bordetella bronchiseptica RB50 2660446 NP_890251.1 CDS BB3716 NC_002927.3 3939056 3939709 R ortholog of Bordetella pertussis (BX470248) BP2400; coenzyme A transferase subunit complement(3939056..3939709) Bordetella bronchiseptica RB50 2660447 NP_890252.1 CDS BB3717 NC_002927.3 3939722 3940420 R ortholog of Bordetella pertussis (BX470248) BP2401; coenzyme A transferase subunit complement(3939722..3940420) Bordetella bronchiseptica RB50 2659574 NP_890253.1 CDS BB3718 NC_002927.3 3940524 3940973 R ortholog of Bordetella pertussis (BX470248) BP2402; hypothetical protein complement(3940524..3940973) Bordetella bronchiseptica RB50 2661113 NP_890254.1 CDS BB3719 NC_002927.3 3941101 3942729 D ortholog of Bordetella pertussis (BX470248) BP2403; electron transfer flavoprotein-ubiquinone oxidoreductase 3941101..3942729 Bordetella bronchiseptica RB50 2659323 NP_890255.1 CDS BB3720 NC_002927.3 3942827 3943711 D ortholog of Bordetella pertussis (BX470248) BP2404; hypothetical protein 3942827..3943711 Bordetella bronchiseptica RB50 2659324 NP_890256.1 CDS BB3721 NC_002927.3 3943708 3944865 D ortholog of Bordetella pertussis (BX470248) BP2405; cytochrome p450 oxidoreductase 3943708..3944865 Bordetella bronchiseptica RB50 2659325 NP_890257.1 CDS BB3722 NC_002927.3 3944862 3945224 D ortholog of Bordetella pertussis (BX470248) BP2406; hypothetical protein 3944862..3945224 Bordetella bronchiseptica RB50 2659326 NP_890258.1 CDS ltaE NC_002927.3 3945238 3946257 R ortholog of Bordetella pertussis (BX470248) BP2407; low-specificity L-threonine aldolase complement(3945238..3946257) Bordetella bronchiseptica RB50 2660062 NP_890259.1 CDS BB3724 NC_002927.3 3946279 3947175 R ortholog of Bordetella pertussis (BX470248) BP2408; integral membrane protein complement(3946279..3947175) Bordetella bronchiseptica RB50 2660063 NP_890260.2 CDS BB3725 NC_002927.3 3947321 3949300 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(3947321..3949300) Bordetella bronchiseptica RB50 2662112 NP_890261.1 CDS BB3726 NC_002927.3 3949512 3950852 R ortholog of Bordetella pertussis (BX470248) BP2410; integral membrane protein complement(3949512..3950852) Bordetella bronchiseptica RB50 2660087 NP_890262.1 CDS BB3727 NC_002927.3 3950849 3951256 R ortholog of Bordetella pertussis (BX470248) BP2411; hypothetical protein complement(3950849..3951256) Bordetella bronchiseptica RB50 2660088 NP_890263.1 CDS prpE NC_002927.3 3951253 3953142 R catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase complement(3951253..3953142) Bordetella bronchiseptica RB50 2659332 NP_890264.1 CDS BB3729 NC_002927.3 3953367 3954035 D ortholog of Bordetella pertussis (BX470248) BP2413; lipoprotein 3953367..3954035 Bordetella bronchiseptica RB50 2662171 NP_890265.1 CDS BB3730 NC_002927.3 3954170 3954481 R ortholog of Bordetella pertussis (BX470248) BP2414; hypothetical protein complement(3954170..3954481) Bordetella bronchiseptica RB50 2660110 NP_890266.1 CDS BB3731 NC_002927.3 3954697 3955641 R ortholog of Bordetella pertussis (BX470248) BP2416; transcriptional regulator CysB-like protein complement(3954697..3955641) Bordetella bronchiseptica RB50 2660111 NP_890267.1 CDS BB3732 NC_002927.3 3955741 3957234 R ortholog of Bordetella pertussis (BX470248) BP2417; oxidoreductase complement(3955741..3957234) Bordetella bronchiseptica RB50 2660851 NP_890268.1 CDS BB3733 NC_002927.3 3957331 3958548 R ortholog of Bordetella pertussis (BX470248) BP2418; ABC transporter substrate-binding protein complement(3957331..3958548) Bordetella bronchiseptica RB50 2660688 NP_890269.1 CDS BB3734 NC_002927.3 3958688 3959608 D ortholog of Bordetella pertussis (BX470248) BP2419; LysR family transcriptional regulator 3958688..3959608 Bordetella bronchiseptica RB50 2659902 NP_890270.1 CDS BB3735 NC_002927.3 3959605 3960717 R ortholog of Bordetella pertussis (BX470248) BP2420; integral membrane protein complement(3959605..3960717) Bordetella bronchiseptica RB50 2659551 NP_890271.1 CDS pepA NC_002927.3 3960771 3962270 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 3960771..3962270 Bordetella bronchiseptica RB50 2661335 NP_890272.1 CDS BB3737 NC_002927.3 3962288 3962743 D ortholog of Bordetella pertussis (BX470248) BP2422; hypothetical protein 3962288..3962743 Bordetella bronchiseptica RB50 2661434 NP_890273.1 CDS BB3738 NC_002927.3 3962774 3963100 D ortholog of Bordetella pertussis (BX470248) BP2423; hypothetical protein 3962774..3963100 Bordetella bronchiseptica RB50 2661435 NP_890274.1 CDS BB3739 NC_002927.3 3963200 3963910 D ortholog of Bordetella pertussis (BX470248) BP2424; integral membrane protein 3963200..3963910 Bordetella bronchiseptica RB50 2661436 NP_890275.1 CDS BB3740 NC_002927.3 3963972 3965045 D ortholog of Bordetella pertussis (BX470248) BP2425; hypothetical protein 3963972..3965045 Bordetella bronchiseptica RB50 2659590 NP_890276.1 CDS BB3741 NC_002927.3 3965042 3966022 D ortholog of Bordetella pertussis (BX470248) BP2426; hypothetical protein 3965042..3966022 Bordetella bronchiseptica RB50 2659591 NP_890277.1 CDS BB3742 NC_002927.3 3966026 3967126 D ortholog of Bordetella pertussis (BX470248) BP2427; threonine synthase 3966026..3967126 Bordetella bronchiseptica RB50 2660784 NP_890278.1 CDS BB3743 NC_002927.3 3967123 3968043 R ortholog of Bordetella pertussis (BX470248) BP2428; LysR family transcriptional regulator complement(3967123..3968043) Bordetella bronchiseptica RB50 2660785 NP_890279.1 CDS BB3744 NC_002927.3 3968063 3968650 R ortholog of Bordetella pertussis (BX470248) BP2429; hypothetical protein complement(3968063..3968650) Bordetella bronchiseptica RB50 2660930 NP_890280.1 CDS era NC_002927.3 3968643 3969533 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(3968643..3969533) Bordetella bronchiseptica RB50 2660323 NP_890281.1 CDS rnc NC_002927.3 3969530 3970300 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(3969530..3970300) Bordetella bronchiseptica RB50 2660324 NP_890282.1 CDS lep NC_002927.3 3970297 3971181 R ortholog of Bordetella pertussis (BX470248) BP2432; signal peptidase I complement(3970297..3971181) Bordetella bronchiseptica RB50 2659098 NP_890283.1 CDS lepA NC_002927.3 3971204 3972997 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(3971204..3972997) Bordetella bronchiseptica RB50 2663946 NP_890284.1 CDS mucD NC_002927.3 3973128 3974615 R ortholog of Bordetella pertussis (BX470248) BP2434; serine protease complement(3973128..3974615) Bordetella bronchiseptica RB50 2662021 NP_890285.1 CDS mucB NC_002927.3 3974653 3975714 R ortholog of Bordetella pertussis (BX470248) BP2435; sigma factor regulatory protein complement(3974653..3975714) Bordetella bronchiseptica RB50 2659392 NP_890286.1 CDS BB3751 NC_002927.3 3975711 3976211 R ortholog of Bordetella pertussis (BX470248) BP2436; hypothetical protein complement(3975711..3976211) Bordetella bronchiseptica RB50 2659703 NP_890287.1 CDS sigE NC_002927.3 3976224 3976823 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(3976224..3976823) Bordetella bronchiseptica RB50 2659704 NP_890288.1 CDS BB3753 NC_002927.3 3976820 3977320 R ortholog of Bordetella pertussis (BX470248) BP2438; integral membrane protein complement(3976820..3977320) Bordetella bronchiseptica RB50 2661970 NP_890289.1 CDS fabF NC_002927.3 3977322 3978551 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase II complement(3977322..3978551) Bordetella bronchiseptica RB50 2661693 NP_890290.1 CDS acpP NC_002927.3 3978741 3978980 R carries the fatty acid chain in fatty acid biosynthesis; acyl-carrier protein complement(3978741..3978980) Bordetella bronchiseptica RB50 2659318 NP_890291.1 CDS fabG NC_002927.3 3979163 3979915 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(3979163..3979915) Bordetella bronchiseptica RB50 2662115 NP_890292.1 CDS fabD NC_002927.3 3979917 3980852 R ortholog of Bordetella pertussis (BX470248) BP2442; ACP S-malonyltransferase complement(3979917..3980852) Bordetella bronchiseptica RB50 2662046 NP_890293.1 CDS fabH NC_002927.3 3980934 3981923 R FabH; beta-ketoacyl-ACP synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-ACP synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(3980934..3981923) Bordetella bronchiseptica RB50 2662047 NP_890294.1 CDS BB3759 NC_002927.3 3981920 3982978 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(3981920..3982978) Bordetella bronchiseptica RB50 2662231 NP_890295.1 CDS rpmF NC_002927.3 3983035 3983217 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(3983035..3983217) Bordetella bronchiseptica RB50 2662232 NP_890296.1 CDS BB3761 NC_002927.3 3983269 3983862 R ortholog of Bordetella pertussis (BX470248) BP2446; hypothetical protein complement(3983269..3983862) Bordetella bronchiseptica RB50 2662233 NP_890297.1 CDS maf NC_002927.3 3983971 3984570 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 3983971..3984570 Bordetella bronchiseptica RB50 2659252 NP_890298.1 CDS BB3763 NC_002927.3 3984567 3985277 D ortholog of Bordetella pertussis (BX470248) BP2448; hypothetical protein 3984567..3985277 Bordetella bronchiseptica RB50 2659253 NP_890299.1 CDS BB3764 NC_002927.3 3985279 3986106 D ortholog of Bordetella pertussis (BX470248) BP2449; hydrolase 3985279..3986106 Bordetella bronchiseptica RB50 2660692 NP_890300.1 CDS BB3765 NC_002927.3 3986103 3986765 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ complement(3986103..3986765) Bordetella bronchiseptica RB50 2660693 NP_890301.1 CDS BB3766 NC_002927.3 3986773 3987732 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY complement(3986773..3987732) Bordetella bronchiseptica RB50 2659504 NP_890302.1 CDS BB3767 NC_002927.3 3987889 3988560 R ortholog of Bordetella pertussis (BX470248) BP0478; hydrolase complement(3987889..3988560) Bordetella bronchiseptica RB50 2659505 NP_890303.1 CDS rluC NC_002927.3 3988563 3989528 R ortholog of Bordetella pertussis (BX470248) BP0477; ribosomal large subunit pseudouridine synthase C complement(3988563..3989528) Bordetella bronchiseptica RB50 2661499 NP_890304.1 CDS rne NC_002927.3 3990036 3993176 D ortholog of Bordetella pertussis (BX470248) BP0475; ribonuclease E 3990036..3993176 Bordetella bronchiseptica RB50 2660955 NP_890305.1 CDS BB3770 NC_002927.3 3993252 3994196 R ortholog of Bordetella pertussis (BX470248) BP0474; choloylglycine hydrolase complement(3993252..3994196) Bordetella bronchiseptica RB50 2660956 NP_890306.1 CDS BB3771 NC_002927.3 3994618 3995154 R ortholog of Bordetella pertussis (BX470248) BP3592; lipoprotein complement(3994618..3995154) Bordetella bronchiseptica RB50 2660768 NP_890307.1 CDS accD NC_002927.3 3995364 3996242 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(3995364..3996242) Bordetella bronchiseptica RB50 2660769 NP_890308.1 CDS trpA NC_002927.3 3996279 3997136 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(3996279..3997136) Bordetella bronchiseptica RB50 2660770 NP_890309.1 CDS trpB NC_002927.3 3997140 3998339 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(3997140..3998339) Bordetella bronchiseptica RB50 2659579 NP_890310.1 CDS BB3775 NC_002927.3 3998449 3999600 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase complement(3998449..3999600) Bordetella bronchiseptica RB50 2661586 NP_890311.1 CDS relA NC_002927.3 3999677 4001890 R ortholog of Bordetella pertussis (BX470248) BP3587; GTP pyrophosphokinase complement(3999677..4001890) Bordetella bronchiseptica RB50 2661587 NP_890312.1 CDS BB3777 NC_002927.3 4001974 4002807 D ortholog of Bordetella pertussis (BX470248) BP3586; hypothetical protein 4001974..4002807 Bordetella bronchiseptica RB50 2659872 NP_890313.1 CDS BB3778 NC_002927.3 4002804 4003313 D ortholog of Bordetella pertussis (BX470248) BP3585; hypothetical protein 4002804..4003313 Bordetella bronchiseptica RB50 2660588 NP_890314.1 CDS BB3779 NC_002927.3 4003446 4003796 R ortholog of Bordetella pertussis (BX470248) BP3584; hypothetical protein complement(4003446..4003796) Bordetella bronchiseptica RB50 2660589 NP_890315.1 CDS pncB NC_002927.3 4003848 4005065 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(4003848..4005065) Bordetella bronchiseptica RB50 2659542 NP_890316.1 CDS BB3781 NC_002927.3 4005241 4005513 D ortholog of Bordetella pertussis (BX470248) BP3582; ferredoxin 4005241..4005513 Bordetella bronchiseptica RB50 2659543 NP_890317.1 CDS BB3782 NC_002927.3 4005559 4006356 D ortholog of Bordetella pertussis (BX470248) BP3581; ferredoxin--NADP reductase 4005559..4006356 Bordetella bronchiseptica RB50 2661018 NP_890318.1 CDS BB3783 NC_002927.3 4006501 4007727 D ortholog of Bordetella pertussis (BX470248) BP3580; intracellular PHB depolymerase 4006501..4007727 Bordetella bronchiseptica RB50 2661019 NP_890319.1 CDS BB3784 NC_002927.3 4007785 4008426 D Involved in the electron transport chain; ferredoxin 4007785..4008426 Bordetella bronchiseptica RB50 2661020 NP_890320.1 CDS nth NC_002927.3 4008423 4009058 D ortholog of Bordetella pertussis (BX470248) BP3578; endonuclease III 4008423..4009058 Bordetella bronchiseptica RB50 2659030 NP_890321.1 CDS BB3786 NC_002927.3 4009317 4010090 D ortholog of Bordetella pertussis (BX470248) BP3577; ABC transporter ATP-binding protein 4009317..4010090 Bordetella bronchiseptica RB50 2662242 NP_890322.1 CDS BB3787 NC_002927.3 4010087 4010797 D ortholog of Bordetella pertussis (BX470248) BP3576; ABC transporter ATP-binding protein 4010087..4010797 Bordetella bronchiseptica RB50 2662243 NP_890323.1 CDS BB3788 NC_002927.3 4010856 4012070 D ortholog of Bordetella pertussis (BX470248) BP3575; hypothetical protein 4010856..4012070 Bordetella bronchiseptica RB50 2659710 NP_890324.1 CDS BB3789 NC_002927.3 4012162 4013049 D ortholog of Bordetella pertussis (BX470248) BP3574; branched-chain amino acid transport permease 4012162..4013049 Bordetella bronchiseptica RB50 2659711 NP_890325.1 CDS BB3790 NC_002927.3 4013046 4014026 D ortholog of Bordetella pertussis (BX470248) BP3573; branched-chain amino acid transport permease 4013046..4014026 Bordetella bronchiseptica RB50 2662210 NP_890326.1 CDS BB3791 NC_002927.3 4014122 4015120 D ortholog of Bordetella pertussis (BX470248) BP3572; glycine/betaine ABC transporter substrate-binding protein 4014122..4015120 Bordetella bronchiseptica RB50 2661161 NP_890327.1 CDS BB3792 NC_002927.3 4015152 4015991 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; aminotransferase 4015152..4015991 Bordetella bronchiseptica RB50 2660748 NP_890328.1 CDS BB3793 NC_002927.3 4016038 4016790 R branched-chain amino acid transport system protein complement(4016038..4016790) Bordetella bronchiseptica RB50 2660749 NP_890329.1 CDS BB3794 NC_002927.3 4016787 4018625 R ortholog of Bordetella pertussis (BX470248) BP3570; branched-chain amino acid transport system protein complement(4016787..4018625) Bordetella bronchiseptica RB50 2659849 NP_890330.1 CDS BB3795 NC_002927.3 4018631 4019668 R ortholog of Bordetella pertussis (BX470248) BP3569; branched-chain amino acid transport system permease complement(4018631..4019668) Bordetella bronchiseptica RB50 2660943 NP_890331.1 CDS BB3796 NC_002927.3 4019830 4020993 R ortholog of Bordetella pertussis (BX470248) BP3568; hypothetical protein complement(4019830..4020993) Bordetella bronchiseptica RB50 2660461 NP_890332.1 CDS BB3797 NC_002927.3 4021226 4021783 R ortholog of Bordetella pertussis (BX470248) BP3567; BioY family protein complement(4021226..4021783) Bordetella bronchiseptica RB50 2660462 NP_890333.1 CDS BB3798 NC_002927.3 4021827 4022420 R ortholog of Bordetella pertussis (BX470248) BP3566; cobalt transport protein complement(4021827..4022420) Bordetella bronchiseptica RB50 2661592 NP_890334.1 CDS BB3799 NC_002927.3 4022417 4023094 R ortholog of Bordetella pertussis (BX470248) BP3565; ABC transporter ATP-binding protein complement(4022417..4023094) Bordetella bronchiseptica RB50 2659573 NP_890335.1 CDS msrB NC_002927.3 4023146 4023547 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 4023146..4023547 Bordetella bronchiseptica RB50 2659826 NP_890336.1 CDS BB3801 NC_002927.3 4023544 4024113 D ortholog of Bordetella pertussis (BX470248) BP3563; intracellular septation protein 4023544..4024113 Bordetella bronchiseptica RB50 2659827 NP_890337.1 CDS BB3802 NC_002927.3 4024135 4024419 D ortholog of Bordetella pertussis (BX470248) BP3562; BolA-like protein 4024135..4024419 Bordetella bronchiseptica RB50 2660664 NP_890338.1 CDS BB3803 NC_002927.3 4024448 4025224 D ortholog of Bordetella pertussis (BX470248) BP3561; peptidyl-prolyl cis-trans isomerase 4024448..4025224 Bordetella bronchiseptica RB50 2660665 NP_890339.1 CDS ligA NC_002927.3 4025309 4027399 R ortholog of Bordetella pertussis (BX470248) BP3560; DNA ligase complement(4025309..4027399) Bordetella bronchiseptica RB50 2661129 NP_890340.1 CDS BB3805 NC_002927.3 4027399 4028457 R ortholog of Bordetella pertussis (BX470248) BP3559; hypothetical protein complement(4027399..4028457) Bordetella bronchiseptica RB50 2660765 NP_890341.1 CDS BB3806 NC_002927.3 4028502 4032089 R ortholog of Bordetella pertussis (BX470248) BP3558; chromosome partition protein complement(4028502..4032089) Bordetella bronchiseptica RB50 2659589 NP_890342.1 CDS BB3807 NC_002927.3 4032292 4033602 D ortholog of Bordetella pertussis (BX470248) BP3557; lysophospholipid transporter LplT 4032292..4033602 Bordetella bronchiseptica RB50 2659560 NP_890343.1 CDS BB3808 NC_002927.3 4033621 4034349 R ortholog of Bordetella pertussis (BX470248) BP3556; bacteriophage-related DNA polymerase complement(4033621..4034349) Bordetella bronchiseptica RB50 2661520 NP_890344.1 CDS BB3809 NC_002927.3 4034504 4035751 R ortholog of Bordetella pertussis (BX470248) BP3555; acetyltransferase complement(4034504..4035751) Bordetella bronchiseptica RB50 2661521 NP_890345.1 CDS ompR NC_002927.3 4035881 4036615 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 4035881..4036615 Bordetella bronchiseptica RB50 2662083 NP_890346.1 CDS risS NC_002927.3 4036620 4038044 D ortholog of Bordetella pertussis (BX470248) BP3553; sensor kinase 4036620..4038044 Bordetella bronchiseptica RB50 2663913 NP_890347.1 CDS ahpC NC_002927.3 4038107 4038655 D ortholog of Bordetella pertussis (BX470248) BP3552; alkyl hydroperoxide reductase 4038107..4038655 Bordetella bronchiseptica RB50 2660038 NP_890348.1 CDS ahpD NC_002927.3 4038711 4039229 D ortholog of Bordetella pertussis (BX470248) BP3551; antioxidant protein 4038711..4039229 Bordetella bronchiseptica RB50 2660039 NP_890349.1 CDS BB3814 NC_002927.3 4039297 4039872 R ortholog of Bordetella pertussis (BX470248) BP3550; AraC family transcriptional regulator complement(4039297..4039872) Bordetella bronchiseptica RB50 2661981 NP_890350.1 CDS BB3815 NC_002927.3 4040014 4041435 D ortholog of Bordetella pertussis (BX470248) BP3549; transporter 4040014..4041435 Bordetella bronchiseptica RB50 2659175 NP_890351.1 CDS ispF NC_002927.3 4041444 4041932 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(4041444..4041932) Bordetella bronchiseptica RB50 2660042 NP_890352.1 CDS ispD NC_002927.3 4041929 4042612 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(4041929..4042612) Bordetella bronchiseptica RB50 2660043 NP_890353.1 CDS mfd NC_002927.3 4042642 4046097 D ortholog of Bordetella pertussis (BX470248) BP0864; transcription-repair coupling factor 4042642..4046097 Bordetella bronchiseptica RB50 2658990 NP_890354.1 CDS serB NC_002927.3 4046133 4046993 D ortholog of Bordetella pertussis (BX470248) BP0863; phosphoserine phosphatase 4046133..4046993 Bordetella bronchiseptica RB50 2661949 NP_890355.1 CDS BB3820 NC_002927.3 4047132 4048049 R ortholog of Bordetella pertussis (BX470248) BP0862; LysR family transcriptional regulator complement(4047132..4048049) Bordetella bronchiseptica RB50 2661950 NP_890356.1 CDS BB3821 NC_002927.3 4048187 4049167 D ortholog of Bordetella pertussis (BX470248) BP0861; hypothetical protein 4048187..4049167 Bordetella bronchiseptica RB50 2660376 NP_890357.1 CDS BB3822 NC_002927.3 4049227 4051017 D catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; catalytic; acetolactate synthase catalytic subunit 4049227..4051017 Bordetella bronchiseptica RB50 2661565 NP_890358.1 CDS fabG NC_002927.3 4051014 4051790 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 4051014..4051790 Bordetella bronchiseptica RB50 2660743 NP_890359.1 CDS BB3824 NC_002927.3 4051800 4052318 R ortholog of Bordetella pertussis (BX470248) BP0858; GNAT family acetyltransferase complement(4051800..4052318) Bordetella bronchiseptica RB50 2660998 NP_890360.1 CDS bfrE NC_002927.3 4052430 4054700 R ortholog of Bordetella pertussis (BX470248) BP0857; TonB-dependent receptor complement(4052430..4054700) Bordetella bronchiseptica RB50 2660614 NP_890361.1 CDS bfrD NC_002927.3 4054912 4057143 R ortholog of Bordetella pertussis (BX470248) BP0856; TonB-dependent receptor complement(4054912..4057143) Bordetella bronchiseptica RB50 2660615 NP_890362.1 CDS BB3827 NC_002927.3 4057444 4057773 R ortholog of Bordetella pertussis (BX470248) BP0855; hypothetical protein complement(4057444..4057773) Bordetella bronchiseptica RB50 2659940 NP_890363.1 CDS nuoN NC_002927.3 4057790 4059274 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(4057790..4059274) Bordetella bronchiseptica RB50 2659941 NP_890364.1 CDS nuoM NC_002927.3 4059285 4060787 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(4059285..4060787) Bordetella bronchiseptica RB50 2659513 NP_890365.1 CDS nuoL NC_002927.3 4060784 4062796 R ortholog of Bordetella pertussis (BX470248) BP0852; NADH-ubiquinone oxidoreductase, chain L complement(4060784..4062796) Bordetella bronchiseptica RB50 2659545 NP_890366.1 CDS nuoK NC_002927.3 4062814 4063122 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(4062814..4063122) Bordetella bronchiseptica RB50 2660680 NP_890367.1 CDS nuoJ NC_002927.3 4063119 4063766 R ortholog of Bordetella pertussis (BX470248) BP0850; NADH-ubiquinone oxidoreductase, chain J complement(4063119..4063766) Bordetella bronchiseptica RB50 2660681 NP_890368.1 CDS nuoI NC_002927.3 4063784 4064272 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(4063784..4064272) Bordetella bronchiseptica RB50 2661052 NP_890369.1 CDS nuoH NC_002927.3 4064294 4065367 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(4064294..4065367) Bordetella bronchiseptica RB50 2660393 NP_890370.1 CDS nuoG NC_002927.3 4065367 4067694 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G complement(4065367..4067694) Bordetella bronchiseptica RB50 2658980 NP_890371.1 CDS nuoF NC_002927.3 4067710 4069077 R ortholog of Bordetella pertussis (BX470248) BP0846; respiratory-chain NADH dehydrogenase, 51 kDa subunit complement(4067710..4069077) Bordetella bronchiseptica RB50 2663003 NP_890372.1 CDS nuoE NC_002927.3 4069074 4069568 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(4069074..4069568) Bordetella bronchiseptica RB50 2663004 NP_890373.1 CDS nuoD NC_002927.3 4069614 4070870 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(4069614..4070870) Bordetella bronchiseptica RB50 2663890 NP_890374.2 CDS nuoC NC_002927.3 4070873 4071496 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C complement(4070873..4071496) Bordetella bronchiseptica RB50 2660299 NP_890375.1 CDS nuoB NC_002927.3 4071571 4072047 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(4071571..4072047) Bordetella bronchiseptica RB50 2660300 NP_890376.1 CDS nuoA NC_002927.3 4072084 4072443 R ortholog of Bordetella pertussis (BX470248) BP0841; NADH-ubiquinone oxidoreductase chain 3 complement(4072084..4072443) Bordetella bronchiseptica RB50 2661062 NP_890377.1 CDS BB3842 NC_002927.3 4072632 4073798 R ortholog of Bordetella pertussis (BX470248) BP0840; outer membrane porin protein precursor complement(4072632..4073798) Bordetella bronchiseptica RB50 2660513 NP_890378.1 CDS BB3843 NC_002927.3 4074253 4074864 D ortholog of Bordetella pertussis (BX470248) BP0838; TetR family transcriptional regulator 4074253..4074864 Bordetella bronchiseptica RB50 2660907 NP_890379.1 CDS BB3844 NC_002927.3 4074866 4075300 D ortholog of Bordetella pertussis (BX470248) BP0837; hypothetical protein 4074866..4075300 Bordetella bronchiseptica RB50 2660908 NP_890380.1 CDS BB3845 NC_002927.3 4075297 4075731 D ortholog of Bordetella pertussis (BX470248) BP0836; hypothetical protein 4075297..4075731 Bordetella bronchiseptica RB50 2660909 NP_890381.1 CDS BB3846 NC_002927.3 4075715 4076518 R ortholog of Bordetella pertussis (BX470248) BP0835; hypothetical protein complement(4075715..4076518) Bordetella bronchiseptica RB50 2660910 NP_890382.1 CDS BB3847 NC_002927.3 4076535 4077350 R ortholog of Bordetella pertussis (BX470248) BP0834; DNA repair exonuclease complement(4076535..4077350) Bordetella bronchiseptica RB50 2660473 NP_890383.1 CDS BB3848 NC_002927.3 4077347 4078306 R ortholog of Bordetella pertussis (BX470248) BP0833; hypothetical protein complement(4077347..4078306) Bordetella bronchiseptica RB50 2659594 NP_890384.1 CDS BB3849 NC_002927.3 4078351 4079247 R ortholog of Bordetella pertussis (BX470248) BP0832; LysR family transcriptional regulator complement(4078351..4079247) Bordetella bronchiseptica RB50 2659595 NP_890385.1 CDS betT NC_002927.3 4079275 4081233 R ortholog of Bordetella pertussis (BX470248) BP0831; high-affinity choline transport protein complement(4079275..4081233) Bordetella bronchiseptica RB50 2659427 NP_890386.1 CDS BB3851 NC_002927.3 4081438 4082106 D ortholog of Bordetella pertussis (BX470248) BP0829; transcriptional regulator 4081438..4082106 Bordetella bronchiseptica RB50 2661355 NP_890387.1 CDS BB3852 NC_002927.3 4082230 4083336 D ortholog of Bordetella pertussis (BX470248) BP0828; hemolysin D 4082230..4083336 Bordetella bronchiseptica RB50 2661356 NP_890388.1 CDS BB3853 NC_002927.3 4083349 4086462 D ortholog of Bordetella pertussis (BX470248) BP0827; integral membrane component of multidrug efflux system 4083349..4086462 Bordetella bronchiseptica RB50 2659798 NP_890389.1 CDS BB3854 NC_002927.3 4086459 4087922 D ortholog of Bordetella pertussis (BX470248) BP0826; outer membrane component of multidrug efflux system 4086459..4087922 Bordetella bronchiseptica RB50 2659788 NP_890390.1 CDS BB3855 NC_002927.3 4087937 4088608 D ortholog of Bordetella pertussis (BX470248) BP0825; hypothetical protein 4087937..4088608 Bordetella bronchiseptica RB50 2661327 NP_890391.1 CDS BB3856 NC_002927.3 4088652 4089146 R ortholog of Bordetella pertussis (BX470248) BP0824; azurin complement(4088652..4089146) Bordetella bronchiseptica RB50 2661328 NP_890392.1 CDS BB3857 NC_002927.3 4089287 4089934 R ortholog of Bordetella pertussis (BX470248) BP0823; transcriptional regulator complement(4089287..4089934) Bordetella bronchiseptica RB50 2661388 NP_890393.1 CDS hyuA NC_002927.3 4090038 4092086 D ortholog of Bordetella pertussis (BX470248) BP0822; hydantoin utilization protein A 4090038..4092086 Bordetella bronchiseptica RB50 2661389 NP_890394.1 CDS hyuB NC_002927.3 4092083 4094095 D ortholog of Bordetella pertussis (BX470248) BP0821; hydantoin utilization protein B 4092083..4094095 Bordetella bronchiseptica RB50 2661605 NP_890395.1 CDS BB3860 NC_002927.3 4094121 4095455 D ortholog of Bordetella pertussis (BX470248) BP0820; hypothetical protein 4094121..4095455 Bordetella bronchiseptica RB50 2661606 NP_890396.1 CDS BB3861 NC_002927.3 4095564 4096556 D ortholog of Bordetella pertussis (BX470248) BP0819; hypothetical protein 4095564..4096556 Bordetella bronchiseptica RB50 2659522 NP_890397.1 CDS BB3862 NC_002927.3 4096623 4098707 R ortholog of Bordetella pertussis (BX470248) BP0818; Similar to Pseudomonas aeruginosa probable thiosulfate sulfurtransferase pa2603 SWALL:Q9I0N4 (EMBL:AE004689) (527 aa) fasta scores: E(): 3.2e-45, 40.31% id in 516 aa, and to Agrobacterium tumefaciens hypothetical protein atu6089 or agr_pti_bx104 SWALL:Q8U646 (EMBL:AE009427) (395 aa) fasta scores: E(): 1.4e-30, 41.66% id in 312 aa; hypothetical protein complement(4096623..4098707) Bordetella bronchiseptica RB50 2659523 NP_890398.1 CDS BB3863 NC_002927.3 4098732 4099742 R ortholog of Bordetella pertussis (BX470248) BP0817; hypothetical protein complement(4098732..4099742) Bordetella bronchiseptica RB50 2660409 NP_890399.1 CDS BB3864 NC_002927.3 4099836 4100837 R ortholog of Bordetella pertussis (BX470248) BP0816; hypothetical protein complement(4099836..4100837) Bordetella bronchiseptica RB50 2660410 NP_890400.1 CDS metC NC_002927.3 4100871 4102112 R ortholog of Bordetella pertussis (BX470248) BP0815; cystathionine beta-lyase complement(4100871..4102112) Bordetella bronchiseptica RB50 2660411 NP_890401.1 CDS BB3866 NC_002927.3 4102193 4103116 D ortholog of Bordetella pertussis (BX470248) BP0814; LysR family transcriptional regulator 4102193..4103116 Bordetella bronchiseptica RB50 2660756 NP_890402.1 CDS BB3867 NC_002927.3 4103194 4104018 D ortholog of Bordetella pertussis (BX470248) BP0813; short-chain dehydrogenase 4103194..4104018 Bordetella bronchiseptica RB50 2660487 NP_890403.1 CDS BB3868 NC_002927.3 4104157 4105140 R ortholog of Bordetella pertussis (BX470248) BP0810; hypothetical protein complement(4104157..4105140) Bordetella bronchiseptica RB50 2660488 NP_890404.1 CDS argH NC_002927.3 4105199 4106692 R ortholog of Bordetella pertussis (BX470248) BP0809; argininosuccinate lyase complement(4105199..4106692) Bordetella bronchiseptica RB50 2661133 NP_890405.1 CDS BB3870 NC_002927.3 4106740 4108128 R ortholog of Bordetella pertussis (BX470248) BP0808; hypothetical protein complement(4106740..4108128) Bordetella bronchiseptica RB50 2661004 NP_890406.1 CDS BB3871 NC_002927.3 4108159 4109148 R ortholog of Bordetella pertussis (BX470248) BP0807; hypothetical protein complement(4108159..4109148) Bordetella bronchiseptica RB50 2661005 NP_890407.1 CDS BB3872 NC_002927.3 4109259 4110491 R ortholog of Bordetella pertussis (BX470248) BP0806; methylaspartate ammonia-lyase complement(4109259..4110491) Bordetella bronchiseptica RB50 2661211 NP_890408.1 CDS BB3873 NC_002927.3 4110773 4111573 D ortholog of Bordetella pertussis (BX470248) BP0805; transcriptional regulator 4110773..4111573 Bordetella bronchiseptica RB50 2661212 NP_890409.1 CDS betT NC_002927.3 4111596 4113827 R ortholog of Bordetella pertussis (BX470248) BP0804; high-affinity choline transport protein complement(4111596..4113827) Bordetella bronchiseptica RB50 2662057 NP_890410.1 CDS secG NC_002927.3 4114691 4115155 R ortholog of Bordetella pertussis (BX470248) BP0802; preprotein translocase subunit SecG complement(4114691..4115155) Bordetella bronchiseptica RB50 2661286 NP_890411.1 CDS tpiA NC_002927.3 4115177 4115923 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(4115177..4115923) Bordetella bronchiseptica RB50 2658999 NP_890412.1 CDS BB3877 NC_002927.3 4116068 4117045 R ortholog of Bordetella pertussis (BX470248) BP0800; zinc-binding dehydrogenase complement(4116068..4117045) Bordetella bronchiseptica RB50 2659680 NP_890413.1 CDS BB3878 NC_002927.3 4117679 4118290 D ortholog of Bordetella pertussis (BX470248) BP0799; hypothetical protein 4117679..4118290 Bordetella bronchiseptica RB50 2659681 NP_890414.1 CDS tdcB NC_002927.3 4118284 4119501 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(4118284..4119501) Bordetella bronchiseptica RB50 2662855 NP_890415.1 CDS BB3880 NC_002927.3 4119540 4120259 R ortholog of Bordetella pertussis (BX470248) BP0796; lipoprotein complement(4119540..4120259) Bordetella bronchiseptica RB50 2662856 NP_890416.1 CDS pnp NC_002927.3 4120380 4122539 R ortholog of Bordetella pertussis (BX470248) BP0795; polynucleotide phosphorylase/polyadenylase complement(4120380..4122539) Bordetella bronchiseptica RB50 2662866 NP_890417.1 CDS rpsO NC_002927.3 4122630 4122899 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(4122630..4122899) Bordetella bronchiseptica RB50 2663337 NP_890418.1 CDS BB3883 NC_002927.3 4123193 4123720 D ortholog of Bordetella pertussis (BX470248) BP0793; lipoprotein 4123193..4123720 Bordetella bronchiseptica RB50 2663817 NP_890419.1 CDS pssA NC_002927.3 4123739 4124518 R ortholog of Bordetella pertussis (BX470248) BP0792; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(4123739..4124518) Bordetella bronchiseptica RB50 2663818 NP_890420.1 CDS ilvC NC_002927.3 4124686 4125702 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(4124686..4125702) Bordetella bronchiseptica RB50 2663891 NP_890421.1 CDS ilvH NC_002927.3 4125775 4126266 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(4125775..4126266) Bordetella bronchiseptica RB50 2660921 NP_890422.1 CDS ilvI NC_002927.3 4126277 4127992 R ortholog of Bordetella pertussis (BX470248) BP0789; acetolactate synthase large subunit complement(4126277..4127992) Bordetella bronchiseptica RB50 2660605 NP_890423.1 CDS BB3888 NC_002927.3 4128462 4130690 D ortholog of Bordetella pertussis (BX470248) BP0787+BP2450; hypothetical protein 4128462..4130690 Bordetella bronchiseptica RB50 2660993 NP_890424.1 CDS BB3889 NC_002927.3 4130697 4131938 R ortholog of Bordetella pertussis (BX470248) BP2451; membrane transport protein complement(4130697..4131938) Bordetella bronchiseptica RB50 2660994 NP_890425.1 CDS BB3890 NC_002927.3 4131950 4132723 R ortholog of Bordetella pertussis (BX470248) BP2452; hypothetical protein complement(4131950..4132723) Bordetella bronchiseptica RB50 2659546 NP_890426.1 CDS BB3891 NC_002927.3 4132750 4133532 R ortholog of Bordetella pertussis (BX470248) BP2454; oxidoreductase complement(4132750..4133532) Bordetella bronchiseptica RB50 2659547 NP_890427.1 CDS BB3892 NC_002927.3 4133621 4134847 R ortholog of Bordetella pertussis (BX470248) BP2455; membrane efflux protein complement(4133621..4134847) Bordetella bronchiseptica RB50 2661378 NP_890428.1 CDS alcA NC_002927.3 4135574 4136959 D ortholog of Bordetella pertussis (BX470248) BP2456; alcaligin biosynthesis enzyme 4135574..4136959 Bordetella bronchiseptica RB50 2661345 NP_890429.1 CDS alcB NC_002927.3 4136978 4137583 D ortholog of Bordetella pertussis (BX470248) BP2457; alcaligin biosynthesis protein 4136978..4137583 Bordetella bronchiseptica RB50 2661346 NP_890430.1 CDS alcC NC_002927.3 4137580 4139436 D ortholog of Bordetella pertussis (BX470248) BP2458; alcaligin biosynthesis protein 4137580..4139436 Bordetella bronchiseptica RB50 2661347 NP_890431.1 CDS alcD NC_002927.3 4139433 4140233 D ortholog of Bordetella pertussis (BX470248) BP2459; hypothetical protein 4139433..4140233 Bordetella bronchiseptica RB50 2661348 NP_890432.1 CDS alcE NC_002927.3 4140248 4141456 D ortholog of Bordetella pertussis (BX470248) BP2460; iron-sulfur protein 4140248..4141456 Bordetella bronchiseptica RB50 2660395 NP_890433.1 CDS alcR NC_002927.3 4141509 4142483 D ortholog of Bordetella pertussis (BX470248) BP2461; transcriptional regulator 4141509..4142483 Bordetella bronchiseptica RB50 2660396 NP_890434.1 CDS bcr NC_002927.3 4142606 4143829 D ortholog of Bordetella pertussis (BX470248) BP2462; drug resistance translocase 4142606..4143829 Bordetella bronchiseptica RB50 2661373 NP_890435.1 CDS fauA NC_002927.3 4143941 4146145 D ortholog of Bordetella pertussis (BX470248) BP2463; ferric alcaligin siderophore receptor 4143941..4146145 Bordetella bronchiseptica RB50 2659471 NP_890436.1 CDS mar NC_002927.3 4146440 4147099 D ortholog of Bordetella pertussis (BX470248) BP2464; membrane efflux protein 4146440..4147099 Bordetella bronchiseptica RB50 2659472 NP_890437.1 CDS BB3903 NC_002927.3 4147652 4148407 D ortholog of Bordetella pertussis (BX470248) BP2465; hypothetical protein 4147652..4148407 Bordetella bronchiseptica RB50 2661408 NP_890438.1 CDS BB3904 NC_002927.3 4148423 4148584 R ortholog of Bordetella pertussis (BX470248) BP2466; hypothetical protein complement(4148423..4148584) Bordetella bronchiseptica RB50 2660572 NP_890439.1 CDS BB3905 NC_002927.3 4148753 4149268 D ortholog of Bordetella pertussis (BX470248) BP2467; hypothetical protein 4148753..4149268 Bordetella bronchiseptica RB50 2660573 NP_890440.1 CDS vrg-6 NC_002927.3 4149541 4149858 D ortholog of Bordetella pertussis (BX470248) BP2468; virulence protein 4149541..4149858 Bordetella bronchiseptica RB50 2660574 NP_890441.1 CDS BB3907 NC_002927.3 4150047 4150295 R ortholog of Bordetella pertussis (BX470248) BP2469; hypothetical protein complement(4150047..4150295) Bordetella bronchiseptica RB50 2660698 NP_890442.1 CDS BB3908 NC_002927.3 4150574 4151929 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(4150574..4151929) Bordetella bronchiseptica RB50 2660699 NP_890443.1 CDS BB3909 NC_002927.3 4151976 4153355 R ortholog of Bordetella pertussis (BX470248) BP2471; recombination factor protein RarA complement(4151976..4153355) Bordetella bronchiseptica RB50 2661034 NP_890444.1 CDS lolA NC_002927.3 4153418 4154050 R participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein complement(4153418..4154050) Bordetella bronchiseptica RB50 2662005 NP_890445.1 CDS ftsK NC_002927.3 4154050 4156410 R ortholog of Bordetella pertussis (BX470248) BP2473; cell division protein complement(4154050..4156410) Bordetella bronchiseptica RB50 2662006 NP_890446.1 CDS trxB NC_002927.3 4156452 4157411 D ortholog of Bordetella pertussis (BX470248) BP2474; thioredoxin reductase 4156452..4157411 Bordetella bronchiseptica RB50 2659287 NP_890447.1 CDS BB3913 NC_002927.3 4157449 4158084 D ortholog of Bordetella pertussis (BX470248) BP2475; hypothetical protein 4157449..4158084 Bordetella bronchiseptica RB50 2659021 NP_890448.1 CDS BB3914 NC_002927.3 4158081 4158413 D ortholog of Bordetella pertussis (BX470248) BP2476; mebrane transport protein 4158081..4158413 Bordetella bronchiseptica RB50 2659022 NP_890449.1 CDS BB3915 NC_002927.3 4158427 4160493 R ortholog of Bordetella pertussis (BX470248) BP2478; membrane transport protein complement(4158427..4160493) Bordetella bronchiseptica RB50 2658982 NP_890450.1 CDS BB3916 NC_002927.3 4160493 4160765 R ortholog of Bordetella pertussis (BX470248) BP2479; integral membrane protein complement(4160493..4160765) Bordetella bronchiseptica RB50 2659736 NP_890451.1 CDS kdpA NC_002927.3 4161548 4163332 D catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 4161548..4163332 Bordetella bronchiseptica RB50 2663924 NP_890452.1 CDS kdpB NC_002927.3 4163356 4165521 D ortholog of Bordetella pertussis (BX470248) BP2481; potassium-transporting ATPase B chain 4163356..4165521 Bordetella bronchiseptica RB50 2663925 NP_890453.1 CDS kdpC NC_002927.3 4165532 4166131 D One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 4165532..4166131 Bordetella bronchiseptica RB50 2661203 NP_890454.1 CDS kdpD NC_002927.3 4166149 4168944 D ortholog of Bordetella pertussis (BX470248) BP2483; two component sensor protein 4166149..4168944 Bordetella bronchiseptica RB50 2660356 NP_890455.1 CDS kdpE NC_002927.3 4168951 4169646 D ortholog of Bordetella pertussis (BX470248) BP2484; two component system transcriptional regulatory protein 4168951..4169646 Bordetella bronchiseptica RB50 2660822 NP_890456.1 CDS BB3922 NC_002927.3 4169655 4170905 R ortholog of Bordetella pertussis (BX470248) BP2486; hypothetical protein complement(4169655..4170905) Bordetella bronchiseptica RB50 2660823 NP_890457.1 CDS BB3923 NC_002927.3 4171055 4172035 R ortholog of Bordetella pertussis (BX470248) BP2487; hypothetical protein complement(4171055..4172035) Bordetella bronchiseptica RB50 2660370 NP_890458.1 CDS icd NC_002927.3 4172234 4173490 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(4172234..4173490) Bordetella bronchiseptica RB50 2660371 NP_890459.1 CDS BB3925 NC_002927.3 4173693 4174118 D ortholog of Bordetella pertussis (BX470248) BP2489; hypothetical protein 4173693..4174118 Bordetella bronchiseptica RB50 2660780 NP_890460.1 CDS BB3926 NC_002927.3 4174169 4174531 R ortholog of Bordetella pertussis (BX470248) BP2490; cytochrome complement(4174169..4174531) Bordetella bronchiseptica RB50 2660781 NP_890461.1 CDS BB3927 NC_002927.3 4174544 4174897 R ortholog of Bordetella pertussis (BX470248) BP2491; cytochrome complement(4174544..4174897) Bordetella bronchiseptica RB50 2660621 NP_890462.1 CDS BB3928 NC_002927.3 4175058 4175945 D ortholog of Bordetella pertussis (BX470248) BP2493; ATP-binding protein 4175058..4175945 Bordetella bronchiseptica RB50 2659470 NP_890463.1 CDS BB3929 NC_002927.3 4175967 4177139 D ortholog of Bordetella pertussis (BX470248) BP2494; hypothetical protein 4175967..4177139 Bordetella bronchiseptica RB50 2661465 NP_890464.1 CDS BB3930 NC_002927.3 4177143 4177697 R ortholog of Bordetella pertussis (BX470248) BP2495; hypothetical protein complement(4177143..4177697) Bordetella bronchiseptica RB50 2661466 NP_890465.1 CDS BB3931 NC_002927.3 4177735 4178109 R ortholog of Bordetella pertussis (BX470248) BP2496; hypothetical protein complement(4177735..4178109) Bordetella bronchiseptica RB50 2661467 NP_890466.1 CDS BB3932 NC_002927.3 4178442 4181192 D ortholog of Bordetella pertussis (BX470248) BP2497; zinc protease 4178442..4181192 Bordetella bronchiseptica RB50 2659954 NP_890467.1 CDS dnaJ NC_002927.3 4181361 4182482 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(4181361..4182482) Bordetella bronchiseptica RB50 2659955 NP_890468.1 CDS dnaK NC_002927.3 4182583 4184508 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(4182583..4184508) Bordetella bronchiseptica RB50 2659867 NP_890469.1 CDS BB3935 NC_002927.3 4184599 4184979 R ortholog of Bordetella pertussis (BX470248) BP2500; thioredoxin complement(4184599..4184979) Bordetella bronchiseptica RB50 2659942 NP_890470.1 CDS BB3936 NC_002927.3 4184987 4185541 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(4184987..4185541) Bordetella bronchiseptica RB50 2659943 NP_890471.1 CDS BB3937 NC_002927.3 4185683 4185925 R ortholog of Bordetella pertussis (BX470248) BP2502; hypothetical protein complement(4185683..4185925) Bordetella bronchiseptica RB50 2659944 NP_890472.1 CDS hemH NC_002927.3 4186007 4187095 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(4186007..4187095) Bordetella bronchiseptica RB50 2661349 NP_890473.1 CDS hrcA NC_002927.3 4187153 4188157 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(4187153..4188157) Bordetella bronchiseptica RB50 2661350 NP_890474.1 CDS ppnK NC_002927.3 4188272 4189171 D catalyzes the phosphorylation of NAD to NADP; NAD(+)/NADH kinase family protein 4188272..4189171 Bordetella bronchiseptica RB50 2660754 NP_890475.1 CDS BB3941 NC_002927.3 4189187 4190848 D ortholog of Bordetella pertussis (BX470248) BP2506; DNA repair protein 4189187..4190848 Bordetella bronchiseptica RB50 2660755 NP_890476.1 CDS fur NC_002927.3 4190923 4191342 R ortholog of Bordetella pertussis (BX470248) BP2507; ferric ion uptake regulator complement(4190923..4191342) Bordetella bronchiseptica RB50 2659456 NP_890477.1 CDS omlA NC_002927.3 4191493 4192041 D ortholog of Bordetella pertussis (BX470248) BP2508; outer membrane lipoprotein 4191493..4192041 Bordetella bronchiseptica RB50 2659457 NP_890478.1 CDS dapB NC_002927.3 4192042 4192851 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 4192042..4192851 Bordetella bronchiseptica RB50 2660417 NP_890479.1 CDS murB NC_002927.3 4192888 4193949 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(4192888..4193949) Bordetella bronchiseptica RB50 2660802 NP_890480.1 CDS BB3946 NC_002927.3 4194368 4195600 R hypothetical protein complement(4194368..4195600) Bordetella bronchiseptica RB50 2660868 NP_890481.1 CDS BB3947 NC_002927.3 4195679 4196134 R transcriptional regulator complement(4195679..4196134) Bordetella bronchiseptica RB50 2660869 NP_890482.1 CDS citE NC_002927.3 4196164 4197051 R citrate lyase complement(4196164..4197051) Bordetella bronchiseptica RB50 2660870 NP_890483.1 CDS BB3949 NC_002927.3 4197204 4198007 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4197204..4198007) Bordetella bronchiseptica RB50 2662134 NP_890484.1 CDS BB3950 NC_002927.3 4198058 4199065 R hypothetical protein complement(4198058..4199065) Bordetella bronchiseptica RB50 2662135 NP_890485.1 CDS BB3951 NC_002927.3 4199387 4200355 R transcriptional regulator complement(4199387..4200355) Bordetella bronchiseptica RB50 2663910 NP_890486.1 CDS BB3952 NC_002927.3 4200746 4202122 D inner membrane protein 4200746..4202122 Bordetella bronchiseptica RB50 2659028 NP_890487.1 CDS BB3953 NC_002927.3 4202119 4203051 D oxidoreductase 4202119..4203051 Bordetella bronchiseptica RB50 2659029 NP_890488.1 CDS BB3954 NC_002927.3 4203328 4204356 D C4-dicarboxylate ABC transporter substrate-binding protein 4203328..4204356 Bordetella bronchiseptica RB50 2659632 NP_890489.1 CDS BB3955 NC_002927.3 4204353 4204898 D inner membrane protein 4204353..4204898 Bordetella bronchiseptica RB50 2659633 NP_890490.1 CDS BB3956 NC_002927.3 4204895 4206169 D inner membrane protein 4204895..4206169 Bordetella bronchiseptica RB50 2660005 NP_890491.1 CDS BB3957 NC_002927.3 4206194 4206955 D transcriptional regulator 4206194..4206955 Bordetella bronchiseptica RB50 2663906 NP_890492.1 CDS BB3958 NC_002927.3 4207054 4207854 D aldolase 4207054..4207854 Bordetella bronchiseptica RB50 2663907 NP_890493.1 CDS BB3959 NC_002927.3 4207881 4208786 D hypothetical protein 4207881..4208786 Bordetella bronchiseptica RB50 2663908 NP_890494.1 CDS BB3960 NC_002927.3 4208893 4209639 D inner membrane protein 4208893..4209639 Bordetella bronchiseptica RB50 2659393 NP_890495.1 CDS BB3961 NC_002927.3 4209726 4210541 D ortholog of Bordetella pertussis (BX470248) BP3110; MerR family transcriptional regulator 4209726..4210541 Bordetella bronchiseptica RB50 2659394 NP_890496.1 CDS BB3962 NC_002927.3 4210674 4212113 D ortholog of Bordetella pertussis (BX470248) BP3109; hypothetical protein 4210674..4212113 Bordetella bronchiseptica RB50 2661297 NP_890497.1 CDS BB3963 NC_002927.3 4212127 4212468 D ortholog of Bordetella pertussis (BX470248) BP3108; hypothetical protein 4212127..4212468 Bordetella bronchiseptica RB50 2661298 NP_890498.1 CDS BB3964 NC_002927.3 4212523 4214280 D ortholog of Bordetella pertussis (BX470248) BP3107; gamma-glutamyltranspeptidase 4212523..4214280 Bordetella bronchiseptica RB50 2661299 NP_890499.1 CDS BB3965 NC_002927.3 4214330 4215340 D ortholog of Bordetella pertussis (BX470248) BP3106; hypothetical protein 4214330..4215340 Bordetella bronchiseptica RB50 2660178 NP_890500.1 CDS BB3966 NC_002927.3 4215473 4216246 D ortholog of Bordetella pertussis (BX470248) BP3105; molybdate ABC transporter substrate-binding protein 4215473..4216246 Bordetella bronchiseptica RB50 2660179 NP_890501.1 CDS BB3967 NC_002927.3 4216276 4216932 D ortholog of Bordetella pertussis (BX470248) BP3104+BP3450; hypothetical protein 4216276..4216932 Bordetella bronchiseptica RB50 2660057 NP_890502.1 CDS BB3968 NC_002927.3 4217378 4217761 D ortholog of Bordetella pertussis (BX470248) BP3449; hypothetical protein 4217378..4217761 Bordetella bronchiseptica RB50 2659268 NP_890503.1 CDS BB3969 NC_002927.3 4217819 4218421 D ortholog of Bordetella pertussis (BX470248) BP3448; hypothetical protein 4217819..4218421 Bordetella bronchiseptica RB50 2659269 NP_890504.1 CDS BB3970 NC_002927.3 4218439 4218840 R ortholog of Bordetella pertussis (BX470248) BP3447; hypothetical protein complement(4218439..4218840) Bordetella bronchiseptica RB50 2659336 NP_890505.1 CDS BB3971 NC_002927.3 4218974 4219867 D ortholog of Bordetella pertussis (BX470248) BP3446; LysR family transcriptional regulator 4218974..4219867 Bordetella bronchiseptica RB50 2659337 NP_890506.1 CDS BB3972 NC_002927.3 4219864 4220445 D ortholog of Bordetella pertussis (BX470248) BP3445; NUDIX hydrolase 4219864..4220445 Bordetella bronchiseptica RB50 2659280 NP_890507.1 CDS aat NC_002927.3 4220450 4221214 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 4220450..4221214 Bordetella bronchiseptica RB50 2659273 NP_890508.1 CDS BB3974 NC_002927.3 4221242 4221976 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 4221242..4221976 Bordetella bronchiseptica RB50 2659274 NP_890509.1 CDS pyrD NC_002927.3 4222017 4223066 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 4222017..4223066 Bordetella bronchiseptica RB50 2662207 NP_890510.1 CDS BB3976 NC_002927.3 4223214 4223792 R ortholog of Bordetella pertussis (BX470248) BP3441; hypothetical protein complement(4223214..4223792) Bordetella bronchiseptica RB50 2661536 NP_890511.1 CDS BB3977 NC_002927.3 4224179 4225156 D ortholog of Bordetella pertussis (BX470248) BP3440; hypothetical protein 4224179..4225156 Bordetella bronchiseptica RB50 2661537 NP_890512.1 CDS dnt NC_002927.3 4225250 4229644 R ortholog of Bordetella pertussis (BX470248) BP3439; dermonecrotic toxin complement(4225250..4229644) Bordetella bronchiseptica RB50 2661538 NP_890513.1 CDS BB3979 NC_002927.3 4229845 4230693 R ortholog of Bordetella pertussis (BX470248) BP3438; IclR family transcriptional regulator complement(4229845..4230693) Bordetella bronchiseptica RB50 2661010 NP_890514.1 CDS BB3980 NC_002927.3 4230851 4231663 R ortholog of Bordetella pertussis (BX470248) BP3437; hypothetical protein complement(4230851..4231663) Bordetella bronchiseptica RB50 2661048 NP_890515.1 CDS BB3981 NC_002927.3 4231716 4232516 R ortholog of Bordetella pertussis (BX470248) BP3393; inner membrane protein complement(4231716..4232516) Bordetella bronchiseptica RB50 2661049 NP_890516.1 CDS BB3982 NC_002927.3 4232578 4232961 D ortholog of Bordetella pertussis (BX470248) BP3394; hypothetical protein 4232578..4232961 Bordetella bronchiseptica RB50 2661050 NP_890517.1 CDS BB3983 NC_002927.3 4232973 4234244 R ortholog of Bordetella pertussis (BX470248) BP3395; ATP-dependent RNA helicase complement(4232973..4234244) Bordetella bronchiseptica RB50 2660763 NP_890518.1 CDS BB3984 NC_002927.3 4234699 4235028 R ortholog of Bordetella pertussis (BX470248) BP3396; inner membrane protein complement(4234699..4235028) Bordetella bronchiseptica RB50 2660842 NP_890519.1 CDS BB3985 NC_002927.3 4235031 4235699 R ortholog of Bordetella pertussis (BX470248) BP3397; inner membrane protein complement(4235031..4235699) Bordetella bronchiseptica RB50 2660843 NP_890520.1 CDS ilvE NC_002927.3 4235963 4236883 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4235963..4236883 Bordetella bronchiseptica RB50 2660694 NP_890521.1 CDS BB3987 NC_002927.3 4236930 4237142 D ortholog of Bordetella pertussis (BX470248) BP3399; hypothetical protein 4236930..4237142 Bordetella bronchiseptica RB50 2660475 NP_890522.1 CDS BB3988 NC_002927.3 4237165 4237587 D ortholog of Bordetella pertussis (BX470248) BP3400; hypothetical protein 4237165..4237587 Bordetella bronchiseptica RB50 2660476 NP_890523.1 CDS BB3989 NC_002927.3 4237604 4238704 D ortholog of Bordetella pertussis (BX470248) BP3401; hypothetical protein 4237604..4238704 Bordetella bronchiseptica RB50 2660477 NP_890524.1 CDS BB3990 NC_002927.3 4238801 4240318 R ortholog of Bordetella pertussis (BX470248) BP3402; hypothetical protein complement(4238801..4240318) Bordetella bronchiseptica RB50 2660478 NP_890525.1 CDS BB3991 NC_002927.3 4240394 4241233 D ortholog of Bordetella pertussis (BX470248) BP3403; UTP--glucose-1-phosphate uridylyltransferase 4240394..4241233 Bordetella bronchiseptica RB50 2661561 NP_890526.1 CDS BB3992 NC_002927.3 4241255 4242136 R ortholog of Bordetella pertussis (BX470248) BP3404; inner membrane protein complement(4241255..4242136) Bordetella bronchiseptica RB50 2661562 NP_890527.1 CDS ompQ NC_002927.3 4242218 4243312 R ortholog of Bordetella pertussis (BX470248) BP3405; outer membrane porin protein OmpQ complement(4242218..4243312) Bordetella bronchiseptica RB50 2661410 NP_890528.1 CDS BB3994 NC_002927.3 4243570 4243929 R ortholog of Bordetella pertussis (BX470248) BP3409; hypothetical protein complement(4243570..4243929) Bordetella bronchiseptica RB50 2661411 NP_890529.1 CDS BB3995 NC_002927.3 4244311 4245318 R ortholog of Bordetella pertussis (BX470248) BP3410; Ca2+/Na+ antiporter complement(4244311..4245318) Bordetella bronchiseptica RB50 2661412 NP_890530.1 CDS BB3996 NC_002927.3 4245635 4246975 D ortholog of Bordetella pertussis (BX470248) BP3411; Xaa-Pro aminopeptidase 4245635..4246975 Bordetella bronchiseptica RB50 2659912 NP_890531.1 CDS BB3997 NC_002927.3 4246985 4247437 R ortholog of Bordetella pertussis (BX470248) BP3412; inner membrane protein complement(4246985..4247437) Bordetella bronchiseptica RB50 2659963 NP_890532.1 CDS BB3998 NC_002927.3 4247534 4248715 D ortholog of Bordetella pertussis (BX470248) BP3413; hypothetical protein 4247534..4248715 Bordetella bronchiseptica RB50 2659964 NP_890533.1 CDS BB3999 NC_002927.3 4248775 4249806 D ortholog of Bordetella pertussis (BX470248) BP3414; hypothetical protein 4248775..4249806 Bordetella bronchiseptica RB50 2659937 NP_890534.1 CDS fis NC_002927.3 4249847 4250086 D ortholog of Bordetella pertussis (BX470248) BP3415; DNA-binding protein 4249847..4250086 Bordetella bronchiseptica RB50 2661374 NP_890535.1 CDS purH NC_002927.3 4250156 4251745 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4250156..4251745 Bordetella bronchiseptica RB50 2661375 NP_890536.1 CDS ruvC NC_002927.3 4251745 4252293 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 4251745..4252293 Bordetella bronchiseptica RB50 2661543 NP_890537.1 CDS ruvA NC_002927.3 4252374 4252946 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 4252374..4252946 Bordetella bronchiseptica RB50 2661502 NP_890538.1 CDS BB4004 NC_002927.3 4252965 4253876 R ortholog of Bordetella pertussis (BX470248) BP3419; hypothetical protein complement(4252965..4253876) Bordetella bronchiseptica RB50 2660483 NP_890539.1 CDS BB4005 NC_002927.3 4253950 4254918 R catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine; serine/threonine dehydratase complement(4253950..4254918) Bordetella bronchiseptica RB50 2660484 NP_890540.1 CDS ruvB NC_002927.3 4255041 4256114 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 4255041..4256114 Bordetella bronchiseptica RB50 2661607 NP_890541.1 CDS BB4007 NC_002927.3 4256119 4257939 R ortholog of Bordetella pertussis (BX470248) BP3422; ATP-dependent DNA helicase complement(4256119..4257939) Bordetella bronchiseptica RB50 2660762 NP_890542.1 CDS BB4008 NC_002927.3 4258016 4259467 R ortholog of Bordetella pertussis (BX470248) BP3221; hypothetical protein complement(4258016..4259467) Bordetella bronchiseptica RB50 2660936 NP_890543.1 CDS ompR NC_002927.3 4259625 4260326 D ortholog of Bordetella pertussis (BX470248) BP3222; transcriptional regulatory protein OmpR 4259625..4260326 Bordetella bronchiseptica RB50 2660821 NP_890544.1 CDS BB4010 NC_002927.3 4260326 4261750 D ortholog of Bordetella pertussis (BX470248) BP3223; two-component sensor 4260326..4261750 Bordetella bronchiseptica RB50 2661011 NP_890545.1 CDS BB4011 NC_002927.3 4261767 4262822 R ortholog of Bordetella pertussis (BX470248) BP3224; cytochrome oxidase complement(4261767..4262822) Bordetella bronchiseptica RB50 2661007 NP_890546.1 CDS BB4012 NC_002927.3 4262819 4264210 R ortholog of Bordetella pertussis (BX470248) BP3225; transmembrane cytochrome oxidase complement(4262819..4264210) Bordetella bronchiseptica RB50 2660086 NP_890547.1 CDS glnS NC_002927.3 4264275 4266038 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 4264275..4266038 Bordetella bronchiseptica RB50 2662087 NP_890548.1 CDS minC NC_002927.3 4266150 4267028 D blocks the formation of polar Z-ring septums; septum formation inhibitor 4266150..4267028 Bordetella bronchiseptica RB50 2659039 NP_890549.1 CDS minD NC_002927.3 4267141 4267956 D ortholog of Bordetella pertussis (BX470248) BP3228; septum site-determining protein 4267141..4267956 Bordetella bronchiseptica RB50 2659040 NP_890550.1 CDS minE NC_002927.3 4267960 4268211 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 4267960..4268211 Bordetella bronchiseptica RB50 2660034 NP_890551.1 CDS osmB NC_002927.3 4268382 4268603 R ortholog of Bordetella pertussis (BX470248) BP3231; osmotically inducible lipoprotein B precursor complement(4268382..4268603) Bordetella bronchiseptica RB50 2659990 NP_890552.1 CDS BB4018 NC_002927.3 4268801 4269340 R ortholog of Bordetella pertussis (BX470248) BP3232; hypothetical protein complement(4268801..4269340) Bordetella bronchiseptica RB50 2659322 NP_890553.1 CDS BB4019 NC_002927.3 4269361 4271034 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(4269361..4271034) Bordetella bronchiseptica RB50 2658988 NP_890554.1 CDS BB4020 NC_002927.3 4271129 4272046 R ortholog of Bordetella pertussis (BX470248) BP3234; hypothetical protein complement(4271129..4272046) Bordetella bronchiseptica RB50 2659818 NP_890555.1 CDS BB4021 NC_002927.3 4272159 4272674 D ortholog of Bordetella pertussis (BX470248) BP3235; hypothetical protein 4272159..4272674 Bordetella bronchiseptica RB50 2660441 NP_890556.1 CDS BB4022 NC_002927.3 4272795 4274276 D catalyzes the formation of indole-3-acetic acid from indole-3-acetamide; indole acetimide hydrolase 4272795..4274276 Bordetella bronchiseptica RB50 2660442 NP_890557.1 CDS BB4023 NC_002927.3 4274409 4274906 D hypothetical protein 4274409..4274906 Bordetella bronchiseptica RB50 2660675 NP_890558.1 CDS BB4024 NC_002927.3 4274919 4275911 R ABC transporter ATP-binding protein complement(4274919..4275911) Bordetella bronchiseptica RB50 2660676 NP_890559.1 CDS BB4025 NC_002927.3 4275908 4276882 R ABC transporter ATP-binding protein complement(4275908..4276882) Bordetella bronchiseptica RB50 2659898 NP_890560.1 CDS BB4026 NC_002927.3 4276890 4277804 R binding-protein-dependent permease complement(4276890..4277804) Bordetella bronchiseptica RB50 2660495 NP_890561.1 CDS BB4027 NC_002927.3 4277804 4278790 R ortholog of Bordetella pertussis (BX470248) BP3236; binding-protein-dependent permease complement(4277804..4278790) Bordetella bronchiseptica RB50 2660808 NP_890562.1 CDS BB4028 NC_002927.3 4278870 4280441 R ortholog of Bordetella pertussis (BX470248) BP3237; peptide ABC transporter substrate-binding protein complement(4278870..4280441) Bordetella bronchiseptica RB50 2659485 NP_890563.1 CDS BB4029 NC_002927.3 4280560 4281495 R ortholog of Bordetella pertussis (BX470248) BP3238; glycosyl transferase family protein complement(4280560..4281495) Bordetella bronchiseptica RB50 2659486 NP_890564.1 CDS BB4030 NC_002927.3 4281684 4282628 D ortholog of Bordetella pertussis (BX470248) BP3239; LysR family transcriptional regulator 4281684..4282628 Bordetella bronchiseptica RB50 2658962 NP_890565.1 CDS BB4031 NC_002927.3 4282697 4282912 R ortholog of Bordetella pertussis (BX470248) BP3239A; hypothetical protein complement(4282697..4282912) Bordetella bronchiseptica RB50 2660001 NP_890566.1 CDS uvrA2 NC_002927.3 4283196 4288913 D ortholog of Bordetella pertussis (BX470248) BP3240; excinuclease ABC subunit A 4283196..4288913 Bordetella bronchiseptica RB50 2659670 NP_890567.1 CDS BB4033 NC_002927.3 4288919 4290046 D catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; aminodeoxychorismate synthase 4288919..4290046 Bordetella bronchiseptica RB50 2660547 NP_890568.1 CDS BB4034 NC_002927.3 4290102 4290728 D ortholog of Bordetella pertussis (BX470248) BP3242; hypothetical protein 4290102..4290728 Bordetella bronchiseptica RB50 2660413 NP_890569.1 CDS BB4035 NC_002927.3 4290978 4291688 R ortholog of Bordetella pertussis (BX470248) BP3244; oxidoreductase complement(4290978..4291688) Bordetella bronchiseptica RB50 2660414 NP_890570.1 CDS BB4036 NC_002927.3 4291685 4292689 R ortholog of Bordetella pertussis (BX470248) BP3245; hypothetical protein complement(4291685..4292689) Bordetella bronchiseptica RB50 2660792 NP_890571.1 CDS BB4037 NC_002927.3 4292821 4294416 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 4292821..4294416 Bordetella bronchiseptica RB50 2661447 NP_890572.1 CDS BB4038 NC_002927.3 4294419 4295156 D ortholog of Bordetella pertussis (BX470248) BP3247; transcriptional regulator 4294419..4295156 Bordetella bronchiseptica RB50 2659541 NP_890573.1 CDS BB4039 NC_002927.3 4295312 4296184 R ortholog of Bordetella pertussis (BX470248) BP3248; hypothetical protein complement(4295312..4296184) Bordetella bronchiseptica RB50 2661368 NP_890574.1 CDS BB4040 NC_002927.3 4296453 4297673 D ortholog of Bordetella pertussis (BX470248) BP3249; inner membrane efflux protein 4296453..4297673 Bordetella bronchiseptica RB50 2661369 NP_890575.1 CDS BB4041 NC_002927.3 4297670 4298329 D ortholog of Bordetella pertussis (BX470248) BP3250; hypothetical protein 4297670..4298329 Bordetella bronchiseptica RB50 2659928 NP_890576.1 CDS pdxH NC_002927.3 4298401 4299033 D ortholog of Bordetella pertussis (BX470248) BP3251; pyridoxamine 5'-phosphate oxidase 4298401..4299033 Bordetella bronchiseptica RB50 2661545 NP_890577.1 CDS BB4043 NC_002927.3 4299063 4299581 D ortholog of Bordetella pertussis (BX470248) BP3252; monooxygenase 4299063..4299581 Bordetella bronchiseptica RB50 2660976 NP_890578.1 CDS BB4044 NC_002927.3 4299592 4300701 D ortholog of Bordetella pertussis (BX470248) BP3253; hypothetical protein 4299592..4300701 Bordetella bronchiseptica RB50 2660977 NP_890579.1 CDS purU NC_002927.3 4300748 4301602 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 4300748..4301602 Bordetella bronchiseptica RB50 2660426 NP_890580.1 CDS BB4046 NC_002927.3 4301604 4302506 R ortholog of Bordetella pertussis (BX470248) BP3255; LysR family transcriptional regulator complement(4301604..4302506) Bordetella bronchiseptica RB50 2660857 NP_890581.1 CDS BB4047 NC_002927.3 4302616 4304325 D ortholog of Bordetella pertussis (BX470248) BP3256+BP0255; oxidoreductase 4302616..4304325 Bordetella bronchiseptica RB50 2661429 NP_890582.1 CDS BB4048 NC_002927.3 4304361 4305341 D ortholog of Bordetella pertussis (BX470248) BP0254; hypothetical protein 4304361..4305341 Bordetella bronchiseptica RB50 2659563 NP_890583.1 CDS BB4049 NC_002927.3 4305355 4306479 D ortholog of Bordetella pertussis (BX470248) BP0253; hypothetical protein 4305355..4306479 Bordetella bronchiseptica RB50 2659679 NP_890584.1 CDS ggt NC_002927.3 4306487 4308241 R ortholog of Bordetella pertussis (BX470248) BP0252; gamma-glutamyltranspeptidase complement(4306487..4308241) Bordetella bronchiseptica RB50 2659620 NP_890585.1 CDS BB4051 NC_002927.3 4308348 4309247 D ortholog of Bordetella pertussis (BX470248) BP0251; LysR family transcriptional regulator 4308348..4309247 Bordetella bronchiseptica RB50 2659621 NP_890586.1 CDS BB4052 NC_002927.3 4309312 4310295 R ortholog of Bordetella pertussis (BX470248) BP0250; hypothetical protein complement(4309312..4310295) Bordetella bronchiseptica RB50 2660018 NP_890587.1 CDS BB4053 NC_002927.3 4310431 4311411 D ortholog of Bordetella pertussis (BX470248) BP0249; hypothetical protein 4310431..4311411 Bordetella bronchiseptica RB50 2660075 NP_890588.1 CDS fumC NC_002927.3 4311428 4312819 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(4311428..4312819) Bordetella bronchiseptica RB50 2660076 NP_890589.1 CDS BB4055 NC_002927.3 4312971 4313507 D ortholog of Bordetella pertussis (BX470248) BP0247; hypothetical protein 4312971..4313507 Bordetella bronchiseptica RB50 2661284 NP_890590.1 CDS amiC NC_002927.3 4313579 4314823 D ortholog of Bordetella pertussis (BX470248) BP0246; N-acetylmuramoyl-L-alanine amidase 4313579..4314823 Bordetella bronchiseptica RB50 2659017 NP_890591.1 CDS dedA NC_002927.3 4314966 4315604 R ortholog of Bordetella pertussis (BX470248) BP0245; hypothetical protein complement(4314966..4315604) Bordetella bronchiseptica RB50 2659111 NP_890592.1 CDS mutL NC_002927.3 4315691 4317580 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 4315691..4317580 Bordetella bronchiseptica RB50 2661524 NP_890593.1 CDS miaA NC_002927.3 4317577 4318518 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 4317577..4318518 Bordetella bronchiseptica RB50 2660800 NP_890594.1 CDS purM NC_002927.3 4318562 4319611 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(4318562..4319611) Bordetella bronchiseptica RB50 2659440 NP_890595.1 CDS BB4061 NC_002927.3 4319864 4320565 D ortholog of Bordetella pertussis (BX470248) BP0241; DnaA regulatory inactivator Hda 4319864..4320565 Bordetella bronchiseptica RB50 2661425 NP_890596.1 CDS BB4062 NC_002927.3 4320562 4321260 D ortholog of Bordetella pertussis (BX470248) BP0240; hypothetical protein 4320562..4321260 Bordetella bronchiseptica RB50 2660566 NP_890597.1 CDS pcnB NC_002927.3 4321261 4322616 D ortholog of Bordetella pertussis (BX470248) BP0239; poly(A) polymerase 4321261..4322616 Bordetella bronchiseptica RB50 2660567 NP_890598.1 CDS folK NC_002927.3 4322613 4323104 D ortholog of Bordetella pertussis (BX470248) BP0238; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 4322613..4323104 Bordetella bronchiseptica RB50 2659835 NP_890599.1 CDS BB4065 NC_002927.3 4323123 4324079 R ortholog of Bordetella pertussis (BX470248) BP0237; hypothetical protein complement(4323123..4324079) Bordetella bronchiseptica RB50 2661578 NP_890600.1 CDS BB4066 NC_002927.3 4324106 4325500 R ortholog of Bordetella pertussis (BX470248) BP0236; hypothetical protein complement(4324106..4325500) Bordetella bronchiseptica RB50 2660372 NP_890601.1 CDS BB4067 NC_002927.3 4325497 4327599 R ortholog of Bordetella pertussis (BX470248) BP0235; hypothetical protein complement(4325497..4327599) Bordetella bronchiseptica RB50 2660373 NP_890602.1 CDS BB4068 NC_002927.3 4327770 4328813 D ortholog of Bordetella pertussis (BX470248) BP0234; C4-dicarboxylate ABC transporter substrate-binding protein 4327770..4328813 Bordetella bronchiseptica RB50 2661404 NP_890603.1 CDS BB4069 NC_002927.3 4328857 4329600 D ortholog of Bordetella pertussis (BX470248) BP0233; GntR family transcriptional regulator 4328857..4329600 Bordetella bronchiseptica RB50 2660658 NP_890604.1 CDS BB4070 NC_002927.3 4329617 4330567 R ortholog of Bordetella pertussis (BX470248) BP0232; oxidoreductase complement(4329617..4330567) Bordetella bronchiseptica RB50 2662236 NP_890605.1 CDS pcaC NC_002927.3 4330622 4331032 R ortholog of Bordetella pertussis (BX470248) BP0231; 4-carboxymuconolactone decarboxylase complement(4330622..4331032) Bordetella bronchiseptica RB50 2662237 NP_890606.1 CDS BB4072 NC_002927.3 4331160 4331987 D ortholog of Bordetella pertussis (BX470248) BP0230; hypothetical protein 4331160..4331987 Bordetella bronchiseptica RB50 2660064 NP_890607.1 CDS BB4073 NC_002927.3 4331984 4332781 D ortholog of Bordetella pertussis (BX470248) BP0229; beta-D-hydroxybutyrate dehydrogenase 4331984..4332781 Bordetella bronchiseptica RB50 2659366 NP_890608.1 CDS BB4074 NC_002927.3 4332834 4333748 D 2-hydroxy-3-oxopropionate reductase 4332834..4333748 Bordetella bronchiseptica RB50 2659114 NP_890609.1 CDS BB4075 NC_002927.3 4333745 4334545 D oxidoreductase 4333745..4334545 Bordetella bronchiseptica RB50 2660066 NP_890610.1 CDS BB4076 NC_002927.3 4334580 4335566 D hypothetical protein 4334580..4335566 Bordetella bronchiseptica RB50 2659062 NP_890611.1 CDS BB4077 NC_002927.3 4335600 4336514 R sugar kinase complement(4335600..4336514) Bordetella bronchiseptica RB50 2662110 NP_890612.1 CDS BB4078 NC_002927.3 4336518 4337357 R citrate lyase subunit beta complement(4336518..4337357) Bordetella bronchiseptica RB50 2662111 NP_890613.1 CDS BB4079 NC_002927.3 4337354 4338550 R CAIB/BAIF family protein complement(4337354..4338550) Bordetella bronchiseptica RB50 2661039 NP_890614.1 CDS BB4080 NC_002927.3 4338547 4339377 R hypothetical protein complement(4338547..4339377) Bordetella bronchiseptica RB50 2661090 NP_890615.1 CDS BB4081 NC_002927.3 4339620 4341143 R fumarate hydratase complement(4339620..4341143) Bordetella bronchiseptica RB50 2661091 NP_890616.1 CDS BB4082 NC_002927.3 4341212 4341979 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4341212..4341979) Bordetella bronchiseptica RB50 2661092 NP_890617.1 CDS BB4083 NC_002927.3 4342162 4343127 D hypothetical protein 4342162..4343127 Bordetella bronchiseptica RB50 2660846 NP_890618.1 CDS BB4084 NC_002927.3 4343149 4343928 D GntR family transcriptional regulator 4343149..4343928 Bordetella bronchiseptica RB50 2660606 NP_890619.1 CDS BB4085 NC_002927.3 4343951 4345213 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 4343951..4345213 Bordetella bronchiseptica RB50 2660607 NP_890620.1 CDS BB4086 NC_002927.3 4345210 4345725 D 3-isopropylmalate dehydratase small subunit 4345210..4345725 Bordetella bronchiseptica RB50 2661409 NP_890621.1 CDS BB4087 NC_002927.3 4345725 4346588 D isocitrate lyase family protein 4345725..4346588 Bordetella bronchiseptica RB50 2661601 NP_890622.1 CDS BB4088 NC_002927.3 4346585 4347775 R ortholog of Bordetella pertussis (BX470248) BP0032; transporter complement(4346585..4347775) Bordetella bronchiseptica RB50 2661602 NP_890623.1 CDS glyQ NC_002927.3 4348002 4348976 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 4348002..4348976 Bordetella bronchiseptica RB50 2661313 NP_890624.1 CDS glyS NC_002927.3 4348978 4351116 D ortholog of Bordetella pertussis (BX470248) BP0034; glycyl-tRNA synthetase subunit beta 4348978..4351116 Bordetella bronchiseptica RB50 2661585 NP_890625.1 CDS BB4091 NC_002927.3 4351113 4351652 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 4351113..4351652 Bordetella bronchiseptica RB50 2661080 NP_890626.1 CDS BB4092 NC_002927.3 4351656 4352384 D ortholog of Bordetella pertussis (BX470248) BP0036; acyltransferase 4351656..4352384 Bordetella bronchiseptica RB50 2660559 NP_890627.1 CDS BB4093 NC_002927.3 4352371 4353279 D ortholog of Bordetella pertussis (BX470248) BP0037; hypothetical protein 4352371..4353279 Bordetella bronchiseptica RB50 2660560 NP_890628.1 CDS gloA NC_002927.3 4353350 4353745 D ortholog of Bordetella pertussis (BX470248) BP0038; lactoylglutathione lyase 4353350..4353745 Bordetella bronchiseptica RB50 2661371 NP_890629.1 CDS def NC_002927.3 4353755 4354285 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 4353755..4354285 Bordetella bronchiseptica RB50 2660732 NP_890630.2 CDS BB4096 NC_002927.3 4354414 4356627 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(4354414..4356627) Bordetella bronchiseptica RB50 2660859 NP_890631.1 CDS BB4097 NC_002927.3 4356911 4357999 D ortholog of Bordetella pertussis (BX470248) BP3334; hypothetical protein 4356911..4357999 Bordetella bronchiseptica RB50 2660973 NP_890632.1 CDS pykA NC_002927.3 4358002 4359444 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(4358002..4359444) Bordetella bronchiseptica RB50 2659299 NP_890633.1 CDS garK NC_002927.3 4359549 4360694 D ortholog of Bordetella pertussis (BX470248) BP3332; glycerate kinase 4359549..4360694 Bordetella bronchiseptica RB50 2659707 NP_890634.1 CDS ksgA NC_002927.3 4360726 4361523 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(4360726..4361523) Bordetella bronchiseptica RB50 2662224 NP_890635.1 CDS BB4101 NC_002927.3 4361548 4363107 R ortholog of Bordetella pertussis (BX470248) BP3330; peptidyl-prolyl cis-trans isomerase complement(4361548..4363107) Bordetella bronchiseptica RB50 2662225 NP_890636.1 CDS BB4102 NC_002927.3 4363104 4365476 R ortholog of Bordetella pertussis (BX470248) BP3329; outer membrane (permeability) protein complement(4363104..4365476) Bordetella bronchiseptica RB50 2661939 NP_890637.1 CDS BB4103 NC_002927.3 4365586 4366689 D ortholog of Bordetella pertussis (BX470248) BP3328; hypothetical protein 4365586..4366689 Bordetella bronchiseptica RB50 2662089 NP_890638.1 CDS BB4104 NC_002927.3 4366689 4367381 D ortholog of Bordetella pertussis (BX470248) BP3327; nucleotidyl transferase 4366689..4367381 Bordetella bronchiseptica RB50 2662090 NP_890639.1 CDS BB4105 NC_002927.3 4367525 4368226 D ortholog of Bordetella pertussis (BX470248) BP3326; inner membrane protein 4367525..4368226 Bordetella bronchiseptica RB50 2662091 NP_890640.1 CDS phhB NC_002927.3 4368211 4368588 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(4368211..4368588) Bordetella bronchiseptica RB50 2661176 NP_890641.1 CDS BB4107 NC_002927.3 4368612 4369259 R ortholog of Bordetella pertussis (BX470248) BP3324; outer membrane protein complement(4368612..4369259) Bordetella bronchiseptica RB50 2661177 NP_890642.1 CDS BB4108 NC_002927.3 4369373 4370245 R ortholog of Bordetella pertussis (BX470248) BP0718; carboxyvinyl-carboxyphosphonate phosphorylmutase complement(4369373..4370245) Bordetella bronchiseptica RB50 2660779 NP_890643.1 CDS BB4109 NC_002927.3 4370586 4370804 D ortholog of Bordetella pertussis (BX470248) BP0720; hypothetical protein 4370586..4370804 Bordetella bronchiseptica RB50 2662601 NP_890644.1 CDS BB4110 NC_002927.3 4370844 4372223 R ortholog of Bordetella pertussis (BX470248) BP0721; aminotransferase complement(4370844..4372223) Bordetella bronchiseptica RB50 2662602 NP_890645.1 CDS BB4111 NC_002927.3 4372264 4373661 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(4372264..4373661) Bordetella bronchiseptica RB50 2659819 NP_890646.1 CDS BB4112 NC_002927.3 4373701 4375353 R ortholog of Bordetella pertussis (BX470248) BP0723; ABC transporter ATP-binding protein complement(4373701..4375353) Bordetella bronchiseptica RB50 2661357 NP_890647.1 CDS BB4113 NC_002927.3 4375357 4376241 R ortholog of Bordetella pertussis (BX470248) BP0724; ABC transporter permease complement(4375357..4376241) Bordetella bronchiseptica RB50 2660538 NP_890648.1 CDS BB4114 NC_002927.3 4376241 4377182 R ortholog of Bordetella pertussis (BX470248) BP0725; ABC transporter permease complement(4376241..4377182) Bordetella bronchiseptica RB50 2660399 NP_890649.1 CDS BB4115 NC_002927.3 4377261 4378880 R ortholog of Bordetella pertussis (BX470248) BP0726; ABC transporter substrate-binding protein complement(4377261..4378880) Bordetella bronchiseptica RB50 2661293 NP_890650.1 CDS BB4116 NC_002927.3 4379047 4379862 D ortholog of Bordetella pertussis (BX470248) BP0727; transcriptional regulator 4379047..4379862 Bordetella bronchiseptica RB50 2659548 NP_890651.1 CDS BB4117 NC_002927.3 4379930 4380499 R ortholog of Bordetella pertussis (BX470248) BP0728; transcriptional regulator complement(4379930..4380499) Bordetella bronchiseptica RB50 2659451 NP_890652.1 CDS nspC NC_002927.3 4381056 4382153 D ortholog of Bordetella pertussis (BX470248) BP0731; carboxynorspermidine decarboxylase 4381056..4382153 Bordetella bronchiseptica RB50 2659452 NP_890653.1 CDS BB4119 NC_002927.3 4382187 4383452 D ortholog of Bordetella pertussis (BX470248) BP0732; hypothetical protein 4382187..4383452 Bordetella bronchiseptica RB50 2661325 NP_890654.1 CDS BB4120 NC_002927.3 4383508 4383996 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA.; RNA polymerase sigma factor complement(4383508..4383996) Bordetella bronchiseptica RB50 2661326 NP_890655.1 CDS BB4121 NC_002927.3 4384128 4385099 D ortholog of Bordetella pertussis (BX470248) BP0737; inner membrane sensor for iron transport 4384128..4385099 Bordetella bronchiseptica RB50 2659583 NP_890656.1 CDS bfrF NC_002927.3 4385219 4387663 D ortholog of Bordetella pertussis (BX470248) BP0736; ferric siderophore receptor 4385219..4387663 Bordetella bronchiseptica RB50 2659509 NP_890657.1 CDS BB4123 NC_002927.3 4387679 4388269 R ortholog of Bordetella pertussis (BX470248) BP0735; hypothetical protein complement(4387679..4388269) Bordetella bronchiseptica RB50 2660710 NP_890658.1 CDS BB4124 NC_002927.3 4388359 4389321 R enzyme-regulator fusion protein complement(4388359..4389321) Bordetella bronchiseptica RB50 2660711 NP_890659.1 CDS BB4125 NC_002927.3 4389556 4390872 D ring-hydroxylating dioxygenase large subunit 4389556..4390872 Bordetella bronchiseptica RB50 2661127 NP_890660.1 CDS BB4126 NC_002927.3 4390878 4391399 D ring-hydroxylating dioxygenase small subunit 4390878..4391399 Bordetella bronchiseptica RB50 2660400 NP_890661.1 CDS BB4127 NC_002927.3 4391528 4392502 R LysR family transcriptional regulator complement(4391528..4392502) Bordetella bronchiseptica RB50 2659984 NP_890662.1 CDS BB4128 NC_002927.3 4392768 4393787 D hypothetical protein 4392768..4393787 Bordetella bronchiseptica RB50 2659989 NP_890663.1 CDS BB4129 NC_002927.3 4393809 4394624 D hydrolase 4393809..4394624 Bordetella bronchiseptica RB50 2659365 NP_890664.1 CDS BB4130 NC_002927.3 4394669 4395085 D hypothetical protein 4394669..4395085 Bordetella bronchiseptica RB50 2659181 NP_890665.1 CDS BB4131 NC_002927.3 4395098 4396132 D similar to the 3-(2,3-dihydroxyphenyl)propionate dioxygenase from E. coli; dioxygenase 4395098..4396132 Bordetella bronchiseptica RB50 2659182 NP_890666.1 CDS BB4132 NC_002927.3 4396129 4397010 D hypothetical protein 4396129..4397010 Bordetella bronchiseptica RB50 2659153 NP_890667.1 CDS BB4133 NC_002927.3 4397304 4397597 D hypothetical protein 4397304..4397597 Bordetella bronchiseptica RB50 2661155 NP_890668.1 CDS BB4134 NC_002927.3 4397627 4398598 D ortholog of Bordetella pertussis (BX470248) BP2847; secreted protein 4397627..4398598 Bordetella bronchiseptica RB50 2661156 NP_890669.1 CDS BB4135 NC_002927.3 4398607 4399782 D ortholog of Bordetella pertussis (BX470248) BP2846; hypothetical protein 4398607..4399782 Bordetella bronchiseptica RB50 2661157 NP_890670.1 CDS BB4136 NC_002927.3 4399779 4401422 D ortholog of Bordetella pertussis (BX470248) BP2843; hypothetical protein 4399779..4401422 Bordetella bronchiseptica RB50 2660284 NP_890671.1 CDS BB4137 NC_002927.3 4401461 4401682 R ortholog of Bordetella pertussis (BX470248) BP2842; Weakly similar to Lactococcus lactis hypothetical 9.2 kDa protein SWALL:Q9JRK4 (EMBL:AF178424) (77 aa) fasta scores: E(): 4, 27.11% id in 59 aa; hypothetical protein complement(4401461..4401682) Bordetella bronchiseptica RB50 2661722 NP_890672.1 CDS BB4138 NC_002927.3 4402025 4403299 D Similar to Xylella fastidiosa phage-related integrase xf0631 SWALL:Q9PFM6 (EMBL:AE003908) (413 aa) fasta scores: E(): 2e-54, 42.41% id in 422 aa, and to Xanthomonas axonopodis phage-related integrase int or xac2222 SWALL:AAM37075 (EMBL:AE011860) (399 aa) fasta scores: E(): 5.2e-07, 27.27% id in 396 aa; phage-related integrase 4402025..4403299 Bordetella bronchiseptica RB50 2661723 NP_890673.1 CDS BB4139 NC_002927.3 4403556 4403798 D Similar to Salmonella enterica subsp. enterica serovar Typhimurium excisionase xiS SWALL:Q9FDI1 (EMBL:AF261825) (122 aa) fasta scores: E(): 0.56, 36.14% id in 83 aa, and to Rhizobium loti hypothetical protein Msr9739 msr9739 SWALL:Q98NU3 (EMBL:AP003017) (93 aa) fasta scores: E(): 0.00042, 43.54% id in 62 aa; hypothetical protein 4403556..4403798 Bordetella bronchiseptica RB50 2662175 NP_890674.1 CDS BB4140 NC_002927.3 4403880 4405982 D Weakly similar to Bacteriophage APSE-1 complete genome SWALL:Q9T1U5 (EMBL:AF157835) (752 aa) fasta scores: E(): 0.0002, 30.76% id in 221 aa, and to Synechococcus RepA protein repA SWALL:Q53576 (EMBL:S89470) (876 aa) fasta scores: E(): 0.007, 25.64% id in 273 aa; hypothetical protein 4403880..4405982 Bordetella bronchiseptica RB50 2662176 NP_890675.1 CDS BB4141 NC_002927.3 4406010 4406357 D no significant database matches; hypothetical protein 4406010..4406357 Bordetella bronchiseptica RB50 2662177 NP_890676.1 CDS BB4142 NC_002927.3 4406322 4406711 R no significant database matches; hypothetical protein complement(4406322..4406711) Bordetella bronchiseptica RB50 2661333 NP_890677.1 CDS BB4143 NC_002927.3 4406933 4407643 D Similar to Xylella fastidiosa hypothetical protein Xf0635 xf0635 SWALL:Q9PFM2 (EMBL:AE003908) (240 aa) fasta scores: E(): 9.4e-44, 53.41% id in 234 aa; hypothetical protein 4406933..4407643 Bordetella bronchiseptica RB50 2661334 NP_890678.1 CDS BB4144 NC_002927.3 4407664 4408173 D Similar to Xylella fastidiosa hypothetical protein Xf0636 xf0636 SWALL:Q9PFM1 (EMBL:AE003908) (155 aa) fasta scores: E(): 2e-16, 40.64% id in 155 aa; hypothetical protein 4407664..4408173 Bordetella bronchiseptica RB50 2662610 NP_890679.1 CDS BB4145 NC_002927.3 4408170 4408550 D no significant database matches; hypothetical protein 4408170..4408550 Bordetella bronchiseptica RB50 2662611 NP_890680.1 CDS BB4146 NC_002927.3 4408564 4408803 D no significant database matches; hypothetical protein 4408564..4408803 Bordetella bronchiseptica RB50 2662612 NP_890681.1 CDS BB4147 NC_002927.3 4408808 4409005 D no significant database matches; hypothetical protein 4408808..4409005 Bordetella bronchiseptica RB50 2662613 NP_890682.1 CDS BB4148 NC_002927.3 4409209 4409517 R no significant database matches; hypothetical protein complement(4409209..4409517) Bordetella bronchiseptica RB50 2659576 NP_890683.1 CDS BB4149 NC_002927.3 4409571 4410059 R no significant database matches; hypothetical protein complement(4409571..4410059) Bordetella bronchiseptica RB50 2659577 NP_890684.1 CDS BB4149A NC_002927.3 4410146 4410352 D no significant database matches; hypothetical protein 4410146..4410352 Bordetella bronchiseptica RB50 2660501 NP_890685.1 CDS BB4150 NC_002927.3 4410503 4411243 R ortholog of Bordetella pertussis (BX470248) BP2841; short-chain dehydrogenase complement(4410503..4411243) Bordetella bronchiseptica RB50 2660502 NP_890686.1 CDS BB4151 NC_002927.3 4411347 4411967 D ortholog of Bordetella pertussis (BX470248) BP2840; TetR family transcriptional regulator 4411347..4411967 Bordetella bronchiseptica RB50 2661058 NP_890687.1 CDS BB4152 NC_002927.3 4411969 4414077 R ortholog of Bordetella pertussis (BX470248) BP2839; hypothetical protein complement(4411969..4414077) Bordetella bronchiseptica RB50 2661141 NP_890688.1 CDS BB4153 NC_002927.3 4414218 4414877 R ortholog of Bordetella pertussis (BX470248) BP2838; hydrolase complement(4414218..4414877) Bordetella bronchiseptica RB50 2661142 NP_890689.1 CDS BB4154 NC_002927.3 4414909 4415373 R ortholog of Bordetella pertussis (BX470248) BP2837; MerR family transcriptional regulator complement(4414909..4415373) Bordetella bronchiseptica RB50 2661143 NP_890690.1 CDS BB4155 NC_002927.3 4415886 4416638 R ortholog of Bordetella pertussis (BX470248) BP2836; DNA-binding protein complement(4415886..4416638) Bordetella bronchiseptica RB50 2659540 NP_890691.1 CDS BB4156 NC_002927.3 4416645 4417907 R ortholog of Bordetella pertussis (BX470248) BP2835; ABC transporter substrate-binding protein complement(4416645..4417907) Bordetella bronchiseptica RB50 2661439 NP_890692.1 CDS BB4157 NC_002927.3 4417949 4419211 R ortholog of Bordetella pertussis (BX470248) BP2833; hypothetical protein complement(4417949..4419211) Bordetella bronchiseptica RB50 2659555 NP_890693.1 CDS BB4158 NC_002927.3 4419216 4420343 R ortholog of Bordetella pertussis (BX470248) BP2832; ABC transporter ATP-binding protein complement(4419216..4420343) Bordetella bronchiseptica RB50 2659556 NP_890694.1 CDS BB4159 NC_002927.3 4420354 4421181 R ortholog of Bordetella pertussis (BX470248) BP2831; ABC transporter complement(4420354..4421181) Bordetella bronchiseptica RB50 2659515 NP_890695.1 CDS BB4160 NC_002927.3 4421168 4422034 R ortholog of Bordetella pertussis (BX470248) BP2830; ABC transporter complement(4421168..4422034) Bordetella bronchiseptica RB50 2660714 NP_890696.1 CDS BB4161 NC_002927.3 4422031 4423404 R ortholog of Bordetella pertussis (BX470248) BP2828; hypothetical protein complement(4422031..4423404) Bordetella bronchiseptica RB50 2661464 NP_890697.1 CDS BB4162 NC_002927.3 4423401 4423805 R ortholog of Bordetella pertussis (BX470248) BP2827; hypothetical protein complement(4423401..4423805) Bordetella bronchiseptica RB50 2659683 NP_890698.1 CDS BB4163 NC_002927.3 4424249 4425160 D ortholog of Bordetella pertussis (BX470248) BP2826; hypothetical protein 4424249..4425160 Bordetella bronchiseptica RB50 2659684 NP_890699.1 CDS BB4164 NC_002927.3 4425175 4425885 D ortholog of Bordetella pertussis (BX470248) BP2825; GntR family transcriptional regulator 4425175..4425885 Bordetella bronchiseptica RB50 2659685 NP_890700.1 CDS BB4165 NC_002927.3 4425882 4427126 D ortholog of Bordetella pertussis (BX470248) BP2824; hypothetical protein 4425882..4427126 Bordetella bronchiseptica RB50 2662012 NP_890701.1 CDS BB4166 NC_002927.3 4427128 4427562 D ortholog of Bordetella pertussis (BX470248) BP2823; hypothetical protein 4427128..4427562 Bordetella bronchiseptica RB50 2659065 NP_890702.1 CDS BB4167 NC_002927.3 4427591 4427896 D ortholog of Bordetella pertussis (BX470248) BP2822; hypothetical protein 4427591..4427896 Bordetella bronchiseptica RB50 2659066 NP_890703.1 CDS BB4168 NC_002927.3 4427954 4429102 R ortholog of Bordetella pertussis (BX470248) BP2820; alcohol dehydrogenase complement(4427954..4429102) Bordetella bronchiseptica RB50 2662014 NP_890704.1 CDS BB4169 NC_002927.3 4429601 4430398 R ortholog of Bordetella pertussis (BX470248) BP2818; hypothetical protein complement(4429601..4430398) Bordetella bronchiseptica RB50 2661931 NP_890705.1 CDS BB4170 NC_002927.3 4430446 4431045 R ortholog of Bordetella pertussis (BX470248) BP2817; ABC transporter complement(4430446..4431045) Bordetella bronchiseptica RB50 2661421 NP_890706.1 CDS BB4171 NC_002927.3 4431056 4432144 R ortholog of Bordetella pertussis (BX470248) BP2816; ABC transporter ATP-binding protein complement(4431056..4432144) Bordetella bronchiseptica RB50 2659429 NP_890707.1 CDS BB4172 NC_002927.3 4432309 4434534 R ortholog of Bordetella pertussis (BX470248) BP2815; hypothetical protein complement(4432309..4434534) Bordetella bronchiseptica RB50 2659503 NP_890708.1 CDS BB4173 NC_002927.3 4434829 4436727 R ortholog of Bordetella pertussis (BX470248) BP2814; hypothetical protein complement(4434829..4436727) Bordetella bronchiseptica RB50 2660544 NP_890709.1 CDS BB4174 NC_002927.3 4436858 4437751 D ortholog of Bordetella pertussis (BX470248) BP2813; inositol monophosphatase-family protein 4436858..4437751 Bordetella bronchiseptica RB50 2660545 NP_890710.1 CDS fadD2 NC_002927.3 4437770 4439446 R ortholog of Bordetella pertussis (BX470248) BP2811; long-chain-fatty-acid--CoA ligase complement(4437770..4439446) Bordetella bronchiseptica RB50 2661130 NP_890711.1 CDS BB4176 NC_002927.3 4439523 4440719 D ortholog of Bordetella pertussis (BX470248) BP2810; hydrolase 4439523..4440719 Bordetella bronchiseptica RB50 2660761 NP_890712.1 CDS BB4177 NC_002927.3 4440733 4441611 R ortholog of Bordetella pertussis (BX470248) BP2809; transcriptional regulator complement(4440733..4441611) Bordetella bronchiseptica RB50 2661144 NP_890713.1 CDS BB4178 NC_002927.3 4441796 4442764 D ortholog of Bordetella pertussis (BX470248) BP2808; integral membrane protein 4441796..4442764 Bordetella bronchiseptica RB50 2660783 NP_890714.1 CDS BB4179 NC_002927.3 4442828 4443238 D ortholog of Bordetella pertussis (BX470248) BP2807; thioesterase 4442828..4443238 Bordetella bronchiseptica RB50 2659469 NP_890715.1 CDS BB4180 NC_002927.3 4443249 4444721 D ortholog of Bordetella pertussis (BX470248) BP2806; cation transport protein 4443249..4444721 Bordetella bronchiseptica RB50 2659524 NP_890716.1 CDS pagP NC_002927.3 4444827 4445375 D catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 4444827..4445375 Bordetella bronchiseptica RB50 2661317 NP_890717.1 CDS BB4182 NC_002927.3 4445372 4445980 R ortholog of Bordetella pertussis (BX470248) BP3007; hypothetical protein complement(4445372..4445980) Bordetella bronchiseptica RB50 2661318 NP_890718.1 CDS grp NC_002927.3 4446163 4446633 R ortholog of Bordetella pertussis (BX470248) BP3008; glutamate uptake regulatory protein complement(4446163..4446633) Bordetella bronchiseptica RB50 2659664 NP_890719.1 CDS BB4184 NC_002927.3 4446640 4447899 R ortholog of Bordetella pertussis (BX470248) BP3009; D-amino acid dehydrogenase small subunit complement(4446640..4447899) Bordetella bronchiseptica RB50 2659187 NP_890720.1 CDS BB4185 NC_002927.3 4447984 4448763 R ortholog of Bordetella pertussis (BX470248) BP3010; oxidoreductase complement(4447984..4448763) Bordetella bronchiseptica RB50 2659188 NP_890721.1 CDS BB4186 NC_002927.3 4448878 4449432 D ortholog of Bordetella pertussis (BX470248) BP3011; hypothetical protein 4448878..4449432 Bordetella bronchiseptica RB50 2659992 NP_890722.1 CDS BB4187 NC_002927.3 4449442 4450425 R ortholog of Bordetella pertussis (BX470248) BP3012; hypothetical protein complement(4449442..4450425) Bordetella bronchiseptica RB50 2659993 NP_890723.1 CDS BB4188 NC_002927.3 4450605 4451324 R ortholog of Bordetella pertussis (BX470248) BP3013; hypothetical protein complement(4450605..4451324) Bordetella bronchiseptica RB50 2659002 NP_890724.1 CDS secA NC_002927.3 4451341 4454076 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(4451341..4454076) Bordetella bronchiseptica RB50 2659003 NP_890725.1 CDS BB4190 NC_002927.3 4454256 4455242 R ortholog of Bordetella pertussis (BX470248) BP3015; M23/M37 family peptidase complement(4454256..4455242) Bordetella bronchiseptica RB50 2663922 NP_890726.1 CDS BB4191 NC_002927.3 4455284 4455778 D ortholog of Bordetella pertussis (BX470248) BP3016; hypothetical protein 4455284..4455778 Bordetella bronchiseptica RB50 2660083 NP_890727.1 CDS lpxC NC_002927.3 4455890 4456813 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(4455890..4456813) Bordetella bronchiseptica RB50 2661983 NP_890728.1 CDS ftsZ NC_002927.3 4457042 4458226 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(4457042..4458226) Bordetella bronchiseptica RB50 2661984 NP_890729.1 CDS ftsA NC_002927.3 4458415 4459641 R ortholog of Bordetella pertussis (BX470248) BP3019; cell division protein FtsA complement(4458415..4459641) Bordetella bronchiseptica RB50 2659712 NP_890730.1 CDS ftsQ NC_002927.3 4459646 4460467 R ortholog of Bordetella pertussis (BX470248) BP3020; cell division protein complement(4459646..4460467) Bordetella bronchiseptica RB50 2659774 NP_890731.1 CDS ddl NC_002927.3 4460480 4461430 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(4460480..4461430) Bordetella bronchiseptica RB50 2659775 NP_890732.1 CDS murC NC_002927.3 4461427 4462833 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(4461427..4462833) Bordetella bronchiseptica RB50 2659249 NP_890733.1 CDS murG NC_002927.3 4462830 4463903 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(4462830..4463903) Bordetella bronchiseptica RB50 2659391 NP_890734.1 CDS ftsW NC_002927.3 4463900 4465093 R ortholog of Bordetella pertussis (BX470248) BP3024; cell division protein FtsW complement(4463900..4465093) Bordetella bronchiseptica RB50 2662214 NP_890735.1 CDS murD NC_002927.3 4465090 4466622 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(4465090..4466622) Bordetella bronchiseptica RB50 2661413 NP_890736.1 CDS mraY NC_002927.3 4466619 4467752 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(4466619..4467752) Bordetella bronchiseptica RB50 2660682 NP_890737.1 CDS murE NC_002927.3 4467778 4470615 R ortholog of Bordetella pertussis (BX470248) BP3027; bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase complement(4467778..4470615) Bordetella bronchiseptica RB50 2662206 NP_890738.1 CDS ftsI NC_002927.3 4470612 4472312 R ortholog of Bordetella pertussis (BX470248) BP3028; peptidoglycan synthetase precursor complement(4470612..4472312) Bordetella bronchiseptica RB50 2662128 NP_890739.1 CDS ftsL NC_002927.3 4472339 4472617 R ortholog of Bordetella pertussis (BX470248) BP3029; cell division protein complement(4472339..4472617) Bordetella bronchiseptica RB50 2660617 NP_890740.1 CDS mraW NC_002927.3 4472617 4473711 R ortholog of Bordetella pertussis (BX470248) BP3030; Similar to Escherichia coli S-adenosyl-methyltransferase MraW or b0082 or z0092 or ecs0086 SWALL:MRAW_ECOLI (SWALL:P18595) (313 aa) fasta scores: E(): 8.9e-52, 52.94% id in 289 aa, and to Neisseria meningitidis s-adenosyl-methyltransferase MraW or nma2074 SWALL:MRAW_NEIMA (SWALL:Q9JSY9) (328 aa) fasta scores: E(): 1.2e-58, 58.74% id in 303 aa; S-adenosyl-methyltransferase MraW complement(4472617..4473711) Bordetella bronchiseptica RB50 2660618 NP_890741.1 CDS mraZ NC_002927.3 4473720 4474211 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(4473720..4474211) Bordetella bronchiseptica RB50 2661089 NP_890742.1 CDS BB4207 NC_002927.3 4474951 4476759 D ortholog of Bordetella pertussis (BX470248) BP3034; ABC transporter ATP-binding protein 4474951..4476759 Bordetella bronchiseptica RB50 2661595 NP_890743.1 CDS pyrC NC_002927.3 4476799 4477878 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(4476799..4477878) Bordetella bronchiseptica RB50 2659587 NP_890744.1 CDS BB4209 NC_002927.3 4477875 4479068 R ortholog of Bordetella pertussis (BX470248) BP3036; hydrolase complement(4477875..4479068) Bordetella bronchiseptica RB50 2659842 NP_890745.1 CDS BB4210 NC_002927.3 4479218 4479496 D ortholog of Bordetella pertussis (BX470248) BP3037; hypothetical protein 4479218..4479496 Bordetella bronchiseptica RB50 2660391 NP_890746.1 CDS BB4211 NC_002927.3 4479865 4480257 R ortholog of Bordetella pertussis (BX470248) BP3038; hypothetical protein complement(4479865..4480257) Bordetella bronchiseptica RB50 2660392 NP_890747.1 CDS lrp NC_002927.3 4487378 4487854 R ortholog of Bordetella pertussis (BX470248) BP3039; leucine-responsive regulatory protein complement(4487378..4487854) Bordetella bronchiseptica RB50 2660460 NP_890748.1 CDS bllY NC_002927.3 4488007 4489119 D ortholog of Bordetella pertussis (BX470248) BP3040; hemolysin 4488007..4489119 Bordetella bronchiseptica RB50 2659784 NP_890749.1 CDS BB4214 NC_002927.3 4489187 4489747 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(4489187..4489747) Bordetella bronchiseptica RB50 2662158 NP_890750.1 CDS cyt NC_002927.3 4489771 4490097 R ortholog of Bordetella pertussis (BX470248) BP3042; cytochrome C552 precursor complement(4489771..4490097) Bordetella bronchiseptica RB50 2662159 NP_890751.1 CDS ilvD NC_002927.3 4490087 4491772 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(4490087..4491772) Bordetella bronchiseptica RB50 2662002 NP_890752.1 CDS lgt NC_002927.3 4491892 4492680 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 4491892..4492680 Bordetella bronchiseptica RB50 2661989 NP_890753.1 CDS BB4218 NC_002927.3 4492655 4493425 R ortholog of Bordetella pertussis (BX470248) BP3045; hypothetical protein complement(4492655..4493425) Bordetella bronchiseptica RB50 2659092 NP_890754.1 CDS BB4219 NC_002927.3 4493739 4494050 R ortholog of Bordetella pertussis (BX470248) BP3047; hypothetical protein complement(4493739..4494050) Bordetella bronchiseptica RB50 2659093 NP_890755.1 CDS BB4220 NC_002927.3 4494050 4494580 R ortholog of Bordetella pertussis (BX470248) BP3048; hypothetical protein complement(4494050..4494580) Bordetella bronchiseptica RB50 2659724 NP_890756.1 CDS BB4221 NC_002927.3 4494933 4495397 D ortholog of Bordetella pertussis (BX470248) BP3050; hypothetical protein 4494933..4495397 Bordetella bronchiseptica RB50 2659725 NP_890757.1 CDS BB4222 NC_002927.3 4495412 4496917 D ortholog of Bordetella pertussis (BX470248) BP3051; hypothetical protein 4495412..4496917 Bordetella bronchiseptica RB50 2660014 NP_890758.1 CDS BB4223 NC_002927.3 4497114 4498721 D ortholog of Bordetella pertussis (BX470248) BP3052; gamma-glutamyltranspeptidase 4497114..4498721 Bordetella bronchiseptica RB50 2659650 NP_890759.1 CDS BB4224 NC_002927.3 4498777 4499682 D ortholog of Bordetella pertussis (BX470248) BP3053; oxidoreductase 4498777..4499682 Bordetella bronchiseptica RB50 2659651 NP_890760.1 CDS acpD NC_002927.3 4499731 4500360 R ortholog of Bordetella pertussis (BX470248) BP0497+BP3054; ACP phosphodiesterase complement(4499731..4500360) Bordetella bronchiseptica RB50 2661303 NP_890761.1 CDS BB4226 NC_002927.3 4500482 4501405 D ortholog of Bordetella pertussis (BX470248) BP0498; LysR family transcriptional regulator 4500482..4501405 Bordetella bronchiseptica RB50 2658995 NP_890762.1 CDS BB4227 NC_002927.3 4501414 4501812 R ortholog of Bordetella pertussis (BX470248) BP0499; hypothetical protein complement(4501414..4501812) Bordetella bronchiseptica RB50 2660196 NP_890763.1 CDS BB4228 NC_002927.3 4502054 4504030 D ortholog of Bordetella pertussis (BX470248) BP0500; hypothetical protein 4502054..4504030 Bordetella bronchiseptica RB50 2660197 NP_890764.1 CDS BB4229 NC_002927.3 4504056 4505567 R ortholog of Bordetella pertussis (BX470248) BP3351+BP0501; two component sensor kinase complement(4504056..4505567) Bordetella bronchiseptica RB50 2660198 NP_890765.1 CDS BB4230 NC_002927.3 4505599 4506252 R ortholog of Bordetella pertussis (BX470248) BP3350; two component response regulator complement(4505599..4506252) Bordetella bronchiseptica RB50 2660974 NP_890766.1 CDS nudH NC_002927.3 4506266 4506838 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(4506266..4506838) Bordetella bronchiseptica RB50 2660975 NP_890767.1 CDS proS NC_002927.3 4506904 4508634 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 4506904..4508634 Bordetella bronchiseptica RB50 2660728 NP_890768.1 CDS BB4233 NC_002927.3 4508687 4509115 D ortholog of Bordetella pertussis (BX470248) BP3347; hypothetical protein 4508687..4509115 Bordetella bronchiseptica RB50 2661122 NP_890769.1 CDS BB4234 NC_002927.3 4509118 4509798 D ortholog of Bordetella pertussis (BX470248) BP3346; TolQ-like translocation protein 4509118..4509798 Bordetella bronchiseptica RB50 2659938 NP_890770.1 CDS BB4235 NC_002927.3 4509798 4510256 D ortholog of Bordetella pertussis (BX470248) BP3345; TolR-like translocation protein 4509798..4510256 Bordetella bronchiseptica RB50 2661168 NP_890771.1 CDS BB4236 NC_002927.3 4510293 4511432 D ortholog of Bordetella pertussis (BX470248) BP3344; proline-rich inner membrane protein 4510293..4511432 Bordetella bronchiseptica RB50 2661169 NP_890772.1 CDS tolB NC_002927.3 4511440 4512765 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 4511440..4512765 Bordetella bronchiseptica RB50 2661172 NP_890773.1 CDS BB4238 NC_002927.3 4512797 4513294 D ortholog of Bordetella pertussis (BX470248) BP3342; peptidoglycan-associated lipoprotein 4512797..4513294 Bordetella bronchiseptica RB50 2661173 NP_890774.1 CDS BB4239 NC_002927.3 4513381 4514070 D ortholog of Bordetella pertussis (BX470248) BP3341; hypothetical protein 4513381..4514070 Bordetella bronchiseptica RB50 2662606 NP_890775.1 CDS BB4240 NC_002927.3 4514070 4515119 D ortholog of Bordetella pertussis (BX470248) BP3340; heme ABC transporter permease 4514070..4515119 Bordetella bronchiseptica RB50 2659948 NP_890776.1 CDS BB4241 NC_002927.3 4515116 4515910 D ortholog of Bordetella pertussis (BX470248) BP3339; ABC transporter ATP-binding protein 4515116..4515910 Bordetella bronchiseptica RB50 2659525 NP_890777.1 CDS BB4242 NC_002927.3 4516079 4517065 D ortholog of Bordetella pertussis (BX470248) BP3338; hypothetical protein 4516079..4517065 Bordetella bronchiseptica RB50 2661002 NP_890778.1 CDS BB4243 NC_002927.3 4517070 4518671 D ortholog of Bordetella pertussis (BX470248) BP3337; gamma-glutamyltranspeptidase 4517070..4518671 Bordetella bronchiseptica RB50 2661003 NP_890779.1 CDS BB4244 NC_002927.3 4518682 4519137 R MarR family transcriptional regulator complement(4518682..4519137) Bordetella bronchiseptica RB50 2660966 NP_890780.1 CDS BB4245 NC_002927.3 4519228 4520496 D amino acid oxidoreductase 4519228..4520496 Bordetella bronchiseptica RB50 2660961 NP_890781.1 CDS BB4246 NC_002927.3 4520509 4521009 R hypothetical protein complement(4520509..4521009) Bordetella bronchiseptica RB50 2660962 NP_890782.1 CDS BB4247 NC_002927.3 4521129 4521935 D hydrolase 4521129..4521935 Bordetella bronchiseptica RB50 2660971 NP_890783.1 CDS BB4248 NC_002927.3 4522158 4523156 D hypothetical protein 4522158..4523156 Bordetella bronchiseptica RB50 2660972 NP_890784.1 CDS BB4249 NC_002927.3 4523257 4524891 D ortholog of Bordetella pertussis (BX470248) BP0423; fatty acid CoA ligase 4523257..4524891 Bordetella bronchiseptica RB50 2661024 NP_890785.1 CDS BB4250 NC_002927.3 4524940 4526133 R ortholog of Bordetella pertussis (BX470248) BP0422; thiolase complement(4524940..4526133) Bordetella bronchiseptica RB50 2660764 NP_890786.1 CDS BB4251 NC_002927.3 4526199 4527227 R ortholog of Bordetella pertussis (BX470248) BP0421; acyl-CoA dehydrogenase complement(4526199..4527227) Bordetella bronchiseptica RB50 2660498 NP_890787.1 CDS BB4252 NC_002927.3 4527254 4528426 R ortholog of Bordetella pertussis (BX470248) BP0420; acyl-CoA dehydrogenase complement(4527254..4528426) Bordetella bronchiseptica RB50 2660499 NP_890788.1 CDS BB4253 NC_002927.3 4528552 4529529 D ortholog of Bordetella pertussis (BX470248) BP0419; LysR family transcriptional regulator 4528552..4529529 Bordetella bronchiseptica RB50 2659600 NP_890789.1 CDS BB4254 NC_002927.3 4529540 4530511 R ortholog of Bordetella pertussis (BX470248) BP0418; hypothetical protein complement(4529540..4530511) Bordetella bronchiseptica RB50 2659501 NP_890790.1 CDS BB4255 NC_002927.3 4530578 4531363 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4530578..4531363) Bordetella bronchiseptica RB50 2659502 NP_890791.1 CDS BB4256 NC_002927.3 4531356 4532588 R ortholog of Bordetella pertussis (BX470248) BP0416; hypothetical protein complement(4531356..4532588) Bordetella bronchiseptica RB50 2659919 NP_890792.1 CDS BB4257 NC_002927.3 4532784 4533539 R ortholog of Bordetella pertussis (BX470248) BP0415; hypothetical protein complement(4532784..4533539) Bordetella bronchiseptica RB50 2659841 NP_890793.1 CDS BB4258 NC_002927.3 4533650 4534168 D ortholog of Bordetella pertussis (BX470248) BP0414; Mg(2+) transporter 4533650..4534168 Bordetella bronchiseptica RB50 2659831 NP_890794.1 CDS fusA NC_002927.3 4534165 4536288 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(4534165..4536288) Bordetella bronchiseptica RB50 2660856 NP_890795.1 CDS BB4260 NC_002927.3 4536699 4537169 R ortholog of Bordetella pertussis (BX470248) BP0410; universal stress protein complement(4536699..4537169) Bordetella bronchiseptica RB50 2660733 NP_890796.1 CDS BB4261 NC_002927.3 4537258 4537602 R ortholog of Bordetella pertussis (BX470248) BP0411; hypothetical protein complement(4537258..4537602) Bordetella bronchiseptica RB50 2659511 NP_890797.1 CDS BB4262 NC_002927.3 4537702 4539102 R ortholog of Bordetella pertussis (BX470248) BP0412; GntR family transcriptional regulator complement(4537702..4539102) Bordetella bronchiseptica RB50 2659512 NP_890798.1 CDS BB4263 NC_002927.3 4539291 4540205 D ortholog of Bordetella pertussis (BX470248) BP0393; hypothetical protein 4539291..4540205 Bordetella bronchiseptica RB50 2659884 NP_890799.1 CDS BB4264 NC_002927.3 4540202 4540861 D ortholog of Bordetella pertussis (BX470248) BP0394; hypothetical protein 4540202..4540861 Bordetella bronchiseptica RB50 2659834 NP_890800.1 CDS BB4265 NC_002927.3 4540949 4541872 D ortholog of Bordetella pertussis (BX470248) BP0395; hypothetical protein 4540949..4541872 Bordetella bronchiseptica RB50 2659081 NP_890801.1 CDS BB4266 NC_002927.3 4541878 4542333 R ortholog of Bordetella pertussis (BX470248) BP0396; hypothetical protein complement(4541878..4542333) Bordetella bronchiseptica RB50 2659082 NP_890802.1 CDS BB4267 NC_002927.3 4542330 4543433 R ortholog of Bordetella pertussis (BX470248) BP0397; hypothetical protein complement(4542330..4543433) Bordetella bronchiseptica RB50 2659386 NP_890803.1 CDS BB4268 NC_002927.3 4543621 4545240 R ortholog of Bordetella pertussis (BX470248) BP0398; hypothetical protein complement(4543621..4545240) Bordetella bronchiseptica RB50 2659387 NP_890804.1 CDS BB4269 NC_002927.3 4545237 4546295 R ortholog of Bordetella pertussis (BX470248) BP0399; glycosyl transferase complement(4545237..4546295) Bordetella bronchiseptica RB50 2661145 NP_890805.1 CDS BB4270 NC_002927.3 4546425 4546940 D ortholog of Bordetella pertussis (BX470248) BP0400; acetyltransferase 4546425..4546940 Bordetella bronchiseptica RB50 2662123 NP_890806.1 CDS gltS NC_002927.3 4547136 4548341 D ortholog of Bordetella pertussis (BX470248) BP0402; sodium/glutamate symport carrier protein 4547136..4548341 Bordetella bronchiseptica RB50 2662124 NP_890807.1 CDS BB4272 NC_002927.3 4548338 4549849 D ortholog of Bordetella pertussis (BX470248) BP0403; hypothetical protein 4548338..4549849 Bordetella bronchiseptica RB50 2662007 NP_890808.1 CDS atoE NC_002927.3 4549865 4551178 R ortholog of Bordetella pertussis (BX470248) BP0404; short-chain fatty acids transporter complement(4549865..4551178) Bordetella bronchiseptica RB50 2661974 NP_890809.1 CDS BB4274 NC_002927.3 4551369 4551548 R ortholog of Bordetella pertussis (BX470248) BP0405; hypothetical protein complement(4551369..4551548) Bordetella bronchiseptica RB50 2661965 NP_890810.1 CDS dnaQ NC_002927.3 4551958 4552692 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(4551958..4552692) Bordetella bronchiseptica RB50 2661029 NP_890811.1 CDS BB4276 NC_002927.3 4552701 4555787 R ortholog of Bordetella pertussis (BX470248) BP0407; hypothetical protein complement(4552701..4555787) Bordetella bronchiseptica RB50 2659568 NP_890812.1 CDS BB4277 NC_002927.3 4555800 4556879 R hemolysin D complement(4555800..4556879) Bordetella bronchiseptica RB50 2660872 NP_890813.1 CDS rnhA NC_002927.3 4557048 4557515 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(4557048..4557515) Bordetella bronchiseptica RB50 2661551 NP_890814.1 CDS BB4279 NC_002927.3 4557576 4558346 R ortholog of Bordetella pertussis (BX470248) BP3212; hypothetical protein complement(4557576..4558346) Bordetella bronchiseptica RB50 2661552 NP_890815.1 CDS gloB NC_002927.3 4558367 4559167 D Similar to Escherichia coli, and Escherichia coli O157:H7 probable hydroxyacylglutathione hydrolase glob or b0212 or z0236 or ecs0208 SWALL:GLO2_ECOLI (SWALL:Q47677) (251 aa) fasta scores: E(): 1.1e-36, 47.45% id in 255 aa; ortholog of Bordetella pertussis (BX470248) BP3213; hydroxyacylglutathione hydrolase 4558367..4559167 Bordetella bronchiseptica RB50 2659410 NP_890816.1 CDS BB4281 NC_002927.3 4559178 4560587 D ortholog of Bordetella pertussis (BX470248) BP3214; membrane-bound lytic murein transglycosylase D precursor 4559178..4560587 Bordetella bronchiseptica RB50 2659411 NP_890817.1 CDS fabI NC_002927.3 4560682 4561467 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 4560682..4561467 Bordetella bronchiseptica RB50 2661304 NP_890818.1 CDS BB4283 NC_002927.3 4561619 4562011 R ortholog of Bordetella pertussis (BX470248) BP3217; hypothetical protein complement(4561619..4562011) Bordetella bronchiseptica RB50 2660238 NP_890819.1 CDS BB4284 NC_002927.3 4562149 4562829 D ortholog of Bordetella pertussis (BX470248) BP3218; hypothetical protein 4562149..4562829 Bordetella bronchiseptica RB50 2660239 NP_890820.1 CDS BB4285 NC_002927.3 4562834 4563805 R ortholog of Bordetella pertussis (BX470248) BP3219; hypothetical protein complement(4562834..4563805) Bordetella bronchiseptica RB50 2661134 NP_890821.1 CDS nadC NC_002927.3 4563901 4564806 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase complement(4563901..4564806) Bordetella bronchiseptica RB50 2661656 NP_890822.1 CDS BB4287 NC_002927.3 4564909 4565877 R ortholog of Bordetella pertussis (BX470248) BP3724; hypothetical protein complement(4564909..4565877) Bordetella bronchiseptica RB50 2661657 NP_890823.1 CDS BB4288 NC_002927.3 4566220 4566453 D ortholog of Bordetella pertussis (BX470248) BP3723; no significant database matches; hypothetical protein 4566220..4566453 Bordetella bronchiseptica RB50 2659800 NP_890824.1 CDS pobA NC_002927.3 4566694 4568055 D ortholog of Bordetella pertussis (BX470248) BP3722; Similar to Pseudomonas pseudoalcaligenes phenoxybenzoate dioxygenase alpha subunit pobA SWALL:POBA_PSEPS (SWALL:Q52185) (409 aa) fasta scores: E(): 4.5e-32, 37.15% id in 401 aa, and to Pseudomonas putida phthalate 4,5-dioxygenase oxygenase subunit pht3 SWALL:PHT3_PSEPU (SWALL:Q05183) (439 aa) fasta scores: E(): 9.7e-25, 31.32% id in 399 aa; iron-sulfur protein 4566694..4568055 Bordetella bronchiseptica RB50 2659801 NP_890825.1 CDS BB4291 NC_002927.3 4568114 4568752 D ortholog of Bordetella pertussis (BX470248) BP3721; no significant database matches; hypothetical protein 4568114..4568752 Bordetella bronchiseptica RB50 2659438 NP_890826.1 CDS BB4292 NC_002927.3 4568752 4569621 D ortholog of Bordetella pertussis (BX470248) BP3720; Similar to Streptomyces coelicolor branched amino acid transport system permease sco7183 or sc8a11.11 SWALL:Q9FBZ9 (EMBL:AL391041) (290 aa) fasta scores: E(): 1.1e-34, 40.78% id in 282 aa, and to Burkholderia cepacia channel-forming polypeptide SWALL:Q8VUC1 (EMBL:AF169302) (294 aa) fasta scores: E(): 3.8e-28, 33.21% id in 283 aa; branched-chain amino acid transport system permease 4568752..4569621 Bordetella bronchiseptica RB50 2659439 NP_890827.1 CDS BB4293 NC_002927.3 4569618 4570580 D ortholog of Bordetella pertussis (BX470248) BP3719; Similar to Streptomyces coelicolor branched amino acid transport system permease sco7184 or sc8a11.12 SWALL:Q9FBZ8 (EMBL:AL391041) (349 aa) fasta scores: E(): 8.9e-26, 32.09% id in 324 aa, and to Burkholderia cepacia channel-forming polypeptide SWALL:Q8VUC2 (EMBL:AF169302) (314 aa) fasta scores: E(): 1.7e-24, 34.06% id in 317 aa; branched-chain amino acid transport system permease 4569618..4570580 Bordetella bronchiseptica RB50 2660127 NP_890828.1 CDS BB4294 NC_002927.3 4570577 4572175 D ortholog of Bordetella pertussis (BX470248) BP3718; Similar to Agrobacterium tumefaciens ABC transporter nucleotide binding/ATPase rbsa or atu6069 or agr_pti_138 SWALL:Q8U666 (EMBL:AE009425) (528 aa) fasta scores: E(): 5.8e-23, 29.98% id in 527 aa, and to Rhizobium meliloti ABC transporter ATP-binding protein r02257 or smc01645 SWALL:Q92NE8 (EMBL:AL591790) (543 aa) fasta scores: E(): 2.6e-20, 27.82% id in 539 aa; branched-chain amino acid transport ATP-binding protein 4570577..4572175 Bordetella bronchiseptica RB50 2662508 NP_890829.1 CDS BB4295 NC_002927.3 4572172 4573395 D ortholog of Bordetella pertussis (BX470248) BP3717; Similar to Escherichia coli hypothetical protein ylbe ylbe or b0519 SWALL:YLBE_ECOLI (SWALL:P77129) (419 aa) fasta scores: E(): 3.2e-27, 32.27% id in 409 aa, and to Salmonella typhi hypothetical protein Sty0578 sty0578 SWALL:Q8Z8Q2 (EMBL:AL627267) (415 aa) fasta scores: E(): 8.9e-27, 31.29% id in 409 aa; hypothetical protein 4572172..4573395 Bordetella bronchiseptica RB50 2662140 NP_890830.1 CDS BB4296 NC_002927.3 4573392 4574537 D ortholog of Bordetella pertussis (BX470248) BP3716; Similar to Streptomyces coelicolor branched amino acid binding secreted protein sco7185 or sc8a11.13 SWALL:Q9FBZ7 (EMBL:AL391041) (396 aa) fasta scores: E(): 1.8e-24, 29.91% id in 361 aa, and to Ralstonia solanacearum probable amino-acid-binding periplasmic rsc3329 or rs02563 SWALL:Q8XU64 (EMBL:AL646074) (382 aa) fasta scores: E(): 1.2e-22, 28.16% id in 387 aa; amino acid ABC transporter substrate-binding protein 4573392..4574537 Bordetella bronchiseptica RB50 2659913 NP_890831.1 CDS BB4297 NC_002927.3 4574553 4575467 R ortholog of Bordetella pertussis (BX470248) BP3715; Similar to Pseudomonas aeruginosa probable transcriptional regulator pa0218 SWALL:Q9I6S0 (EMBL:AE004459) (306 aa) fasta scores: E(): 2e-29, 34.42% id in 305 aa, and to Rhizobium loti transcriptional regulator mll7443 SWALL:Q986A7 (EMBL:AP003011) (303 aa) fasta scores: E(): 2.9e-20, 29.96% id in 287 aa; LysR family transcriptional regulator complement(4574553..4575467) Bordetella bronchiseptica RB50 2659914 NP_890832.1 CDS BB4298 NC_002927.3 4575590 4576381 D ortholog of Bordetella pertussis (BX470248) BP3714; Similar to Thermus thermophilus probable quinone oxidoreductase SWALL:BAB92082 (EMBL:AB085185) (302 aa) fasta scores: E(): 4e-07, 30.7% id in 228 aa, and to Myxococcus xanthus oxidoreductase SWALL:Q8VQC9 (EMBL:AF457462) (325 aa) fasta scores: E(): 9.4e-06, 27.08% id in 240 aa; zinc-binding dehydrogenase 4575590..4576381 Bordetella bronchiseptica RB50 2661636 NP_890833.1 CDS BB4299 NC_002927.3 4576378 4577682 D ortholog of Bordetella pertussis (BX470248) BP3713; Similar to Bradyrhizobium japonicum malonamidase e2 SWALL:Q9ZIV5 (EMBL:AF012735) (414 aa) fasta scores: E(): 2.2e-40, 39.15% id in 401 aa, and to Rhizobium meliloti amidase ra0756 or sma1377 SWALL:Q92YV7 (EMBL:AE007262) (471 aa) fasta scores: E(): 7e-29, 34.43% id in 395 aa; amidase 4576378..4577682 Bordetella bronchiseptica RB50 2660292 NP_890834.1 CDS BB4300 NC_002927.3 4577679 4578623 D ortholog of Bordetella pertussis (BX470248) BP3712; Similar to Pseudomonas sp. CA10 reductase SWALL:Q9AQN2 (EMBL:AB047548) (315 aa) fasta scores: E(): 8.5e-45, 49.13% id in 289 aa, and to Caulobacter crescentus vanillate O-demethylase, reductase subunit cc2394 SWALL:Q9A5Q3 (EMBL:AE005908) (316 aa) fasta scores: E(): 7.6e-36, 42.81% id in 306 aa; oxidoreductase 4577679..4578623 Bordetella bronchiseptica RB50 2660293 NP_890835.1 CDS nudC NC_002927.3 4578737 4579471 D ortholog of Bordetella pertussis (BX470248) BP3711; Similar to Escherichia coli NADH pyrophosphatase NudC or b3996 SWALL:NUDC_ECOLI (SWALL:P32664) (257 aa) fasta scores: E(): 3e-27, 46.38% id in 166 aa, and to Pseudomonas aeruginosa NADH pyrophosphatase NudC or pa1823 SWALL:NUDC_PSEAE (SWALL:O86062) (278 aa) fasta scores: E(): 5.1e-35, 51.87% id in 187 aa; NADH pyrophosphatase 4578737..4579471 Bordetella bronchiseptica RB50 2660954 NP_890836.1 CDS BB4302 NC_002927.3 4579496 4580164 R ortholog of Bordetella pertussis (BX470248) BP3710; Similar to Deinococcus radiodurans transcriptional regulator, tetr family dr2376 SWALL:Q9RRV9 (EMBL:AE002068) (197 aa) fasta scores: E(): 2.6e-09, 28.71% id in 195 aa, and to Mycobacterium tuberculosis hypothetical 24.1 kDa protein rv0158 or mtv032.01 or mt0167 SWALL:O53641 (EMBL:AL021927) (214 aa) fasta scores: E(): 3.7e-08, 29% id in 200 aa; TetR family transcriptional regulator complement(4579496..4580164) Bordetella bronchiseptica RB50 2661975 NP_890837.1 CDS BB4303 NC_002927.3 4580491 4581684 D ortholog of Bordetella pertussis (BX470248) BP3709; Similar to Rhodococcus sp. AD45 racemase isoG SWALL:Q9RBP6 (EMBL:AJ249207) (405 aa) fasta scores: E(): 3.1e-50, 38% id in 400 aa, and to Streptomyces coelicolor racemase sco0362 or scf41.21 SWALL:Q9RJU8 (EMBL:AL117387) (403 aa) fasta scores: E(): 3.6e-41, 37.81% id in 402 aa; racemase 4580491..4581684 Bordetella bronchiseptica RB50 2661976 NP_890838.1 CDS BB4304 NC_002927.3 4581681 4582685 D ortholog of Bordetella pertussis (BX470248) BP3708; Similar to Ralstonia solanacearum probable oxidoreductase rsc1203 or rs02677 SWALL:Q8Y041 (EMBL:AL646063) (324 aa) fasta scores: E(): 6.5e-45, 42.77% id in 332 aa, and to Pseudomonas aeruginosa probable oxidoreductase pa5234 SWALL:Q9HTV6 (EMBL:AE004936) (325 aa) fasta scores: E(): 2.8e-43, 40.18% id in 331 aa; zinc-binding dehydrogenase 4581681..4582685 Bordetella bronchiseptica RB50 2660296 NP_890839.1 CDS BB4305 NC_002927.3 4582738 4583703 D ortholog of Bordetella pertussis (BX470248) BP3707; Similar to Rhizobium meliloti hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 7e-37, 37.29% id in 311 aa, and to Comamonas testosteroni Orf4 protein orf4 SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 8.4e-35, 36.99% id in 319 aa; hypothetical protein 4582738..4583703 Bordetella bronchiseptica RB50 2661739 NP_890840.1 CDS BB4306 NC_002927.3 4583705 4584478 D ortholog of Bordetella pertussis (BX470248) BP3706; Similar to Clostridium acetobutylicum 3-hydroxybutyryl-CoA dehydratase crt or cac2712 SWALL:CRT_CLOAB (SWALL:P52046) (261 aa) fasta scores: E(): 2.9e-25, 39.92% id in 253 aa, and to Thermoanaerobacter tengcongensis enoyl-CoA hydratase/carnithine racemase caid or tte0544 SWALL:Q8RC92 (EMBL:AE013024) (260 aa) fasta scores: E(): 2.8e-28, 38.28% id in 256 aa; enoyl-CoA hydratase 4583705..4584478 Bordetella bronchiseptica RB50 2661740 NP_890841.1 CDS BB4307 NC_002927.3 4584965 4585864 D ortholog of Bordetella pertussis (BX470248) BP3705; Similar to Rhizobium loti ATP-binding protein of ABC transporter mll1253 SWALL:Q98KZ4 (EMBL:AP002997) (267 aa) fasta scores: E(): 4.9e-42, 49.07% id in 271 aa, and to Methanococcus jannaschii hypothetical ABC transporter ATP-binding protein Mj0412 mj0412 SWALL:Y412_METJA (SWALL:Q57855) (267 aa) fasta scores: E(): 8.3e-42, 45.88% id in 255 aa; taurine ABC transporter ATP-binding protein 4584965..4585864 Bordetella bronchiseptica RB50 2661906 NP_890842.1 CDS BB4308 NC_002927.3 4585891 4586943 D ortholog of Bordetella pertussis (BX470248) BP3704; Similar to Bacillus subtilis aliphatic sulfonates binding protein precursor ssuA SWALL:SSUA_BACSU (SWALL:P40400) (332 aa) fasta scores: E(): 7.9e-10, 28.75% id in 240 aa, and to Brucella melitensis aliphatic sulfonates-binding lipoprotein bmeii0109 SWALL:Q8YDR6 (EMBL:AE009649) (319 aa) fasta scores: E(): 5.6e-09, 26.33% id in 262 aa; aliphatic sulfonate ABC transporter substrate-binding protein 4585891..4586943 Bordetella bronchiseptica RB50 2661820 NP_890843.1 CDS BB4309 NC_002927.3 4586940 4587737 D ortholog of Bordetella pertussis (BX470248) BP3703; Similar to Escherichia coli taurine transport system permease tauc tauc or ssic or b0367 SWALL:TAUC_ECOLI (SWALL:Q47539) (275 aa) fasta scores: E(): 3.9e-34, 36.32% id in 256 aa, and to Escherichia coli O157:H7 taurine transport system permease tauc or z0466 or ecs0421 SWALL:Q8X5I4 (EMBL:AE005216) (275 aa) fasta scores: E(): 5.9e-34, 36.32% id in 256 aa; transport system permease 4586940..4587737 Bordetella bronchiseptica RB50 2659836 NP_890844.1 CDS BB4310 NC_002927.3 4587799 4588590 D ortholog of Bordetella pertussis (BX470248) BP3702; Similar to Ralstonia solanacearum probable transcription regulator protein rsp1506 or rs03035 SWALL:Q8XPY0 (EMBL:AL646085) (240 aa) fasta scores: E(): 3e-10, 26.33% id in 224 aa, and to Ralstonia solanacearum probable transcription regulator protein rsc1997 or rs03565 SWALL:Q8XXW6 (EMBL:AL646067) (274 aa) fasta scores: E(): 5.9e-08, 23% id in 213 aa; GntR family transcriptional regulator 4587799..4588590 Bordetella bronchiseptica RB50 2659490 NP_890845.1 CDS BB4311 NC_002927.3 4588643 4589692 D ortholog of Bordetella pertussis (BX470248) BP3701; Similar to Brucella melitensis aliphatic sulfonates-binding lipoprotein bmeii0109 SWALL:Q8YDR6 (EMBL:AE009649) (319 aa) fasta scores: E(): 2.4e-13, 28.12% id in 256 aa, and to Bacillus subtilis aliphatic sulfonates binding protein precursor ssuA SWALL:SSUA_BACSU (SWALL:P40400) (332 aa) fasta scores: E(): 2.5e-12, 28.88% id in 270 aa; hypothetical protein 4588643..4589692 Bordetella bronchiseptica RB50 2659491 NP_890846.1 CDS BB4312 NC_002927.3 4589873 4590865 D ortholog of Bordetella pertussis (BX470248) BP3700; hypothetical protein 4589873..4590865 Bordetella bronchiseptica RB50 2660790 NP_890847.1 CDS BB4313 NC_002927.3 4590878 4591708 R ortholog of Bordetella pertussis (BX470248) BP3699; GntR family transcriptional regulator complement(4590878..4591708) Bordetella bronchiseptica RB50 2660791 NP_890848.1 CDS BB4314 NC_002927.3 4591762 4592823 R inner membrane transport protein complement(4591762..4592823) Bordetella bronchiseptica RB50 2660360 NP_890849.1 CDS BB4315 NC_002927.3 4592820 4594277 R sulfatase complement(4592820..4594277) Bordetella bronchiseptica RB50 2660960 NP_890850.1 CDS BB4316 NC_002927.3 4594417 4596018 R GMC oxidoreductase complement(4594417..4596018) Bordetella bronchiseptica RB50 2660287 NP_890851.1 CDS BB4317 NC_002927.3 4596032 4596988 R iron-sulfur oxidoreductase subunit complement(4596032..4596988) Bordetella bronchiseptica RB50 2660897 NP_890852.1 CDS BB4318 NC_002927.3 4597004 4598440 R dioxygenase complement(4597004..4598440) Bordetella bronchiseptica RB50 2661117 NP_890853.1 CDS BB4319 NC_002927.3 4598502 4599956 R ortholog of Bordetella pertussis (BX470248) BP3165; aldehyde dehydrogenase complement(4598502..4599956) Bordetella bronchiseptica RB50 2661118 NP_890854.1 CDS ureG NC_002927.3 4600250 4600894 R ortholog of Bordetella pertussis (BX470248) BP3166; urease accessory protein complement(4600250..4600894) Bordetella bronchiseptica RB50 2661063 NP_890855.1 CDS ureF NC_002927.3 4600919 4601581 R ortholog of Bordetella pertussis (BX470248) BP3167; urease accessory protein complement(4600919..4601581) Bordetella bronchiseptica RB50 2660659 NP_890856.1 CDS ureE NC_002927.3 4601604 4602221 R involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE complement(4601604..4602221) Bordetella bronchiseptica RB50 2660660 NP_890857.1 CDS ureC NC_002927.3 4602224 4603939 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(4602224..4603939) Bordetella bronchiseptica RB50 2661104 NP_890858.1 CDS ureB NC_002927.3 4603936 4604244 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta complement(4603936..4604244) Bordetella bronchiseptica RB50 2660423 NP_890859.1 CDS ureJ NC_002927.3 4604261 4604878 R ortholog of Bordetella pertussis (BX470248) BP3170; urease accessory protein complement(4604261..4604878) Bordetella bronchiseptica RB50 2660424 NP_890860.1 CDS ureA NC_002927.3 4604923 4605225 R UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma complement(4604923..4605225) Bordetella bronchiseptica RB50 2661077 NP_890861.1 CDS ureD NC_002927.3 4605326 4606180 R ortholog of Bordetella pertussis (BX470248) BP3172; urease accessory protein complement(4605326..4606180) Bordetella bronchiseptica RB50 2662636 NP_890862.1 CDS bbuR NC_002927.3 4606647 4607624 D Previously sequenced as Bordetella bronchiseptica probable transcriptional regulator BbuR SWALL:BBUR_BORBR (SWALL:O06703) (343 aa) fasta scores: E(): 3.4e-108, 100% id in 286 aa; LysR family transcriptional regulator 4606647..4607624 Bordetella bronchiseptica RB50 2662637 NP_890863.1 CDS BB4329 NC_002927.3 4607746 4608753 D previously sequenced as Bordetella bronchiseptica hypothetical protein in bbur 5'region precursor SWALL:YBBU_BORBR (SWALL:O06702) (311 aa) fasta scores: E(): 1.3e-106, 100% id in 311 aa. Similar to Rhizobium meliloti hypothetical protein ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 3.6e-33, 37.66% id in 308 aa; hypothetical protein 4607746..4608753 Bordetella bronchiseptica RB50 2659986 NP_890864.1 CDS BB4330 NC_002927.3 4608841 4609803 D Similar to Agrobacterium tumefaciens hypothetical protein atu4727 atu4727 or agr_l_312 SWALL:Q8U6S9 (EMBL:AE009401) (329 aa) fasta scores: E(): 4.8e-35, 38.72% id in 315 aa, and to Rhizobium meliloti hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1e-31, 37.07% id in 321 aa; hypothetical protein 4608841..4609803 Bordetella bronchiseptica RB50 2659987 NP_890865.1 CDS BB4331 NC_002927.3 4609822 4610964 D Similar to Pseudomonas aeruginosa hypothetical protein Pa1016 pa1016 SWALL:Q9I4V7 (EMBL:AE004534) (383 aa) fasta scores: E(): 2e-43, 38.7% id in 385 aa, and to Mycobacterium tuberculosis hypothetical 40.6 kDa protein ltp2 or rv3540c or mtcy03c7.16 or mt3644 SWALL:P71861 (EMBL:Z82098) (386 aa) fasta scores: E(): 1e-30, 39.74% id in 385 aa; hypothetical protein 4609822..4610964 Bordetella bronchiseptica RB50 2659281 NP_890866.1 CDS BB4332 NC_002927.3 4610961 4611377 D Similar to Methanopyrus kandleri predicted nucleic-acid-binding protein containing a zn-ribbon mk1377 SWALL:Q8TVL2 (EMBL:AE010431) (134 aa) fasta scores: E(): 1.4e-08, 32.43% id in 111 aa, and to Thermoplasma volcanium hypothetical protein tv0134 tv0134 or tvg0142586 SWALL:Q97CG7 (EMBL:AP000991) (135 aa) fasta scores: E(): 4.1e-08, 33.05% id in 121 aa; hypothetical protein 4610961..4611377 Bordetella bronchiseptica RB50 2661152 NP_890867.1 CDS bbsE NC_002927.3 4611374 4612570 D Similar to Thauera aromatica BbsE SWALL:Q9KJF0 (EMBL:AF173961) (410 aa) fasta scores: E(): 4.9e-43, 38.15% id in 380 aa, and to Sphingomonas aromaticivorans hypothetical 41.0 kDa protein orf1338 SWALL:O86014 (EMBL:AF079317) (388 aa) fasta scores: E(): 4.1e-23, 31.39% id in 395 aa; subunit of succinyl-CoA:benzylsuccinate CoA-transferase 4611374..4612570 Bordetella bronchiseptica RB50 2661153 NP_890868.1 CDS bbsF NC_002927.3 4612567 4613781 D Similar to Thauera aromatica BbsF SWALL:Q9KJE9 (EMBL:AF173961) (409 aa) fasta scores: E(): 2.6e-56, 42% id in 400 aa, and to Ralstonia solanacearum transmembrane protein rsc0796 or rs05041 SWALL:Q8Y194 (EMBL:AL646061) (420 aa) fasta scores: E(): 5.4e-42, 35.73% id in 417 aa; subunit of succinyl-CoA:benzylsuccinate CoA-transferase 4612567..4613781 Bordetella bronchiseptica RB50 2659118 NP_890869.1 CDS BB4335 NC_002927.3 4613788 4614831 D Similar to Rhizobium sp. hypothetical 33.9 kDa protein Y4mH y4mH SWALL:Y4MH_RHISN (SWALL:P55567) (297 aa) fasta scores: E(): 1.5e-05, 32.42% id in 330 aa, and to Neurospora crassa conserved hypothetical protein b11h24.110 SWALL:Q8X0J2 (EMBL:AL670005) (359 aa) fasta scores: E(): 0.00028, 24.71% id in 348 aa; hypothetical protein 4613788..4614831 Bordetella bronchiseptica RB50 2659119 NP_890870.1 CDS BB4336 NC_002927.3 4615144 4615938 R ortholog of Bordetella pertussis (BX470248) BP3176; GntR family transcriptional regulator complement(4615144..4615938) Bordetella bronchiseptica RB50 2660529 NP_890871.1 CDS BB4337 NC_002927.3 4616039 4617274 D ortholog of Bordetella pertussis (BX470248) BP3177; methylaspartate ammonia-lyase 4616039..4617274 Bordetella bronchiseptica RB50 2662116 NP_890872.1 CDS BB4338 NC_002927.3 4617343 4618359 D ortholog of Bordetella pertussis (BX470248) BP3178; hypothetical protein 4617343..4618359 Bordetella bronchiseptica RB50 2662117 NP_890873.1 CDS BB4339 NC_002927.3 4618356 4619747 D ortholog of Bordetella pertussis (BX470248) BP3179; hypothetical protein 4618356..4619747 Bordetella bronchiseptica RB50 2662142 NP_890874.1 CDS BB4340 NC_002927.3 4619744 4620940 D ortholog of Bordetella pertussis (BX470248) BP3180; hypothetical protein 4619744..4620940 Bordetella bronchiseptica RB50 2662143 NP_890875.1 CDS BB4341 NC_002927.3 4620937 4622475 R ortholog of Bordetella pertussis (BX470248) BP3181; SpoVR family protein complement(4620937..4622475) Bordetella bronchiseptica RB50 2661228 NP_890876.1 CDS BB4342 NC_002927.3 4622472 4623731 R ortholog of Bordetella pertussis (BX470248) BP3182; hypothetical protein complement(4622472..4623731) Bordetella bronchiseptica RB50 2659453 NP_890877.1 CDS BB4343 NC_002927.3 4623744 4625723 R ortholog of Bordetella pertussis (BX470248) BP3183; hypothetical protein complement(4623744..4625723) Bordetella bronchiseptica RB50 2659454 NP_890878.1 CDS BB4344 NC_002927.3 4626047 4627171 R ortholog of Bordetella pertussis (BX470248) BP2948; riboflavin biosynthesis protein diaminohydroxyphosphoribosylaminopyrimidine deaminase complement(4626047..4627171) Bordetella bronchiseptica RB50 2660965 NP_890879.1 CDS BB4345 NC_002927.3 4627377 4627940 D ortholog of Bordetella pertussis (BX470248) BP2949; hypothetical protein 4627377..4627940 Bordetella bronchiseptica RB50 2661095 NP_890880.1 CDS BB4346 NC_002927.3 4627953 4628909 D ortholog of Bordetella pertussis (BX470248) BP2950; AraC family transcriptional regulator 4627953..4628909 Bordetella bronchiseptica RB50 2661480 NP_890881.1 CDS nrdR NC_002927.3 4628922 4629404 R ortholog of Bordetella pertussis (BX470248) BP2951; transcriptional regulator NrdR complement(4628922..4629404) Bordetella bronchiseptica RB50 2659780 NP_890882.1 CDS glyA NC_002927.3 4629563 4630810 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(4629563..4630810) Bordetella bronchiseptica RB50 2659781 NP_890883.1 CDS BB4349 NC_002927.3 4631025 4631681 R ortholog of Bordetella pertussis (BX470248) BP2953; hypothetical protein complement(4631025..4631681) Bordetella bronchiseptica RB50 2659538 NP_890884.1 CDS tyrS NC_002927.3 4631717 4632946 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(4631717..4632946) Bordetella bronchiseptica RB50 2660377 NP_890885.1 CDS BB4351 NC_002927.3 4633208 4634623 D ortholog of Bordetella pertussis (BX470248) BP2956; hypothetical protein 4633208..4634623 Bordetella bronchiseptica RB50 2661490 NP_890886.1 CDS anmK NC_002927.3 4634629 4635765 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 4634629..4635765 Bordetella bronchiseptica RB50 2661491 NP_890887.1 CDS BB4353 NC_002927.3 4635835 4636206 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(4635835..4636206) Bordetella bronchiseptica RB50 2663931 NP_890888.1 CDS BB4354 NC_002927.3 4636294 4637061 R ortholog of Bordetella pertussis (BX470248) BP2959; integral membrane protein complement(4636294..4637061) Bordetella bronchiseptica RB50 2659805 NP_890889.1 CDS argC NC_002927.3 4637077 4638141 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(4637077..4638141) Bordetella bronchiseptica RB50 2659806 NP_890890.1 CDS rpsI NC_002927.3 4638330 4638722 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(4638330..4638722) Bordetella bronchiseptica RB50 2659586 NP_890891.2 CDS rplM NC_002927.3 4638732 4639160 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(4638732..4639160) Bordetella bronchiseptica RB50 2663656 NP_890892.1 CDS BB4358 NC_002927.3 4639455 4640552 R ortholog of Bordetella pertussis (BX470248) BP2963; C4-dicarboxylate ABC transporter substrate-binding protein complement(4639455..4640552) Bordetella bronchiseptica RB50 2660518 NP_890893.1 CDS BB4359 NC_002927.3 4640892 4642256 R ortholog of Bordetella pertussis (BX470248) BP2964; hypothetical protein complement(4640892..4642256) Bordetella bronchiseptica RB50 2660519 NP_890894.1 CDS BB4360 NC_002927.3 4642315 4642866 D ortholog of Bordetella pertussis (BX470248) BP2965; hypothetical protein 4642315..4642866 Bordetella bronchiseptica RB50 2659561 NP_890895.1 CDS BB4361 NC_002927.3 4642880 4643554 D ortholog of Bordetella pertussis (BX470248) BP2966; carboxylesterase 4642880..4643554 Bordetella bronchiseptica RB50 2659562 NP_890896.1 CDS BB4362 NC_002927.3 4643766 4644815 D ortholog of Bordetella pertussis (BX470248) BP2967; hypothetical protein 4643766..4644815 Bordetella bronchiseptica RB50 2661396 NP_890897.1 CDS BB4363 NC_002927.3 4644812 4645621 D ortholog of Bordetella pertussis (BX470248) BP2969; ABC transporter ATP-binding protein 4644812..4645621 Bordetella bronchiseptica RB50 2661397 NP_890898.1 CDS BB4364 NC_002927.3 4645624 4646460 D ortholog of Bordetella pertussis (BX470248) BP2970; ABC transporter 4645624..4646460 Bordetella bronchiseptica RB50 2659559 NP_890899.1 CDS BB4365 NC_002927.3 4646475 4647167 D ortholog of Bordetella pertussis (BX470248) BP2971; hydrolase 4646475..4647167 Bordetella bronchiseptica RB50 2659532 NP_890900.1 CDS BB4366 NC_002927.3 4647179 4647568 R ortholog of Bordetella pertussis (BX470248) BP2972; hypothetical protein complement(4647179..4647568) Bordetella bronchiseptica RB50 2661617 NP_890901.1 CDS dbpA NC_002927.3 4647674 4649062 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(4647674..4649062) Bordetella bronchiseptica RB50 2661618 NP_890902.1 CDS BB4368 NC_002927.3 4649179 4650675 R ortholog of Bordetella pertussis (BX470248) BP2974; integral membrane protein complement(4649179..4650675) Bordetella bronchiseptica RB50 2661107 NP_890903.1 CDS BB4369 NC_002927.3 4650972 4651646 D ortholog of Bordetella pertussis (BX470248) BP2975; GntR family transcriptional regulator 4650972..4651646 Bordetella bronchiseptica RB50 2661096 NP_890904.1 CDS BB4370 NC_002927.3 4651643 4654102 R ortholog of Bordetella pertussis (BX470248) BP2977; hypothetical protein complement(4651643..4654102) Bordetella bronchiseptica RB50 2661097 NP_890905.1 CDS gltX NC_002927.3 4654199 4655644 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 4654199..4655644 Bordetella bronchiseptica RB50 2661098 NP_890906.1 CDS BB4372 NC_002927.3 4655648 4656850 R ortholog of Bordetella pertussis (BX470248) BP2979; membrane transport protein complement(4655648..4656850) Bordetella bronchiseptica RB50 2661093 NP_890907.1 CDS BB4373 NC_002927.3 4656919 4657428 R ortholog of Bordetella pertussis (BX470248) BP2980; lipoprotein complement(4656919..4657428) Bordetella bronchiseptica RB50 2659743 NP_890908.1 CDS BB4374 NC_002927.3 4657637 4658089 R ortholog of Bordetella pertussis (BX470248) BP2981; AsnC family transcriptional regulator complement(4657637..4658089) Bordetella bronchiseptica RB50 2660097 NP_890909.1 CDS BB4375 NC_002927.3 4658218 4661724 D catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; 2-oxoacid ferredoxin oxidoreductase 4658218..4661724 Bordetella bronchiseptica RB50 2660098 NP_890910.1 CDS nrdA NC_002927.3 4662030 4664957 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 4662030..4664957 Bordetella bronchiseptica RB50 2659051 NP_890911.1 CDS nrdB NC_002927.3 4664979 4666175 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 4664979..4666175 Bordetella bronchiseptica RB50 2660004 NP_890912.1 CDS bph1 NC_002927.3 4666493 4667170 D ortholog of Bordetella pertussis (BX470248) bpH1; histone protein 4666493..4667170 Bordetella bronchiseptica RB50 2663901 NP_890913.1 CDS BB4379 NC_002927.3 4667309 4667884 D ortholog of Bordetella pertussis (BX470248) BP2986; integral membrane protein 4667309..4667884 Bordetella bronchiseptica RB50 2659616 NP_890914.1 CDS dltA NC_002927.3 4667892 4669355 R ortholog of Bordetella pertussis (BX470248) BP2987; D-alanine--D-alanine ligase complement(4667892..4669355) Bordetella bronchiseptica RB50 2661121 NP_890915.1 CDS dltB NC_002927.3 4669366 4670493 R ortholog of Bordetella pertussis (BX470248) BP2988; protein involved in the transfer of D-alanine into teichoic acids complement(4669366..4670493) Bordetella bronchiseptica RB50 2662172 NP_890916.1 CDS BB4382 NC_002927.3 4670501 4670626 R ortholog of Bordetella pertussis (BX470248) BP2989; hypothetical protein complement(4670501..4670626) Bordetella bronchiseptica RB50 2661195 NP_890917.1 CDS dltD NC_002927.3 4670623 4671750 R ortholog of Bordetella pertussis (BX470248) BP2990; protein involved in the transfer of D-alanine into teichoic acids complement(4670623..4671750) Bordetella bronchiseptica RB50 2662065 NP_890918.1 CDS BB4384 NC_002927.3 4671776 4672015 R ortholog of Bordetella pertussis (BX470248) BP2991; acyl-carrier protein complement(4671776..4672015) Bordetella bronchiseptica RB50 2662066 NP_890919.1 CDS pcp NC_002927.3 4672337 4672840 R ortholog of Bordetella pertussis (BX470248) BP2992; lipoprotein complement(4672337..4672840) Bordetella bronchiseptica RB50 2662067 NP_890920.1 CDS BB4386 NC_002927.3 4673014 4673955 R ortholog of Bordetella pertussis (BX470248) BP2993; carbohydrate kinase complement(4673014..4673955) Bordetella bronchiseptica RB50 2660072 NP_890921.1 CDS BB4387 NC_002927.3 4673967 4675076 R ortholog of Bordetella pertussis (BX470248) BP2994; hypothetical protein complement(4673967..4675076) Bordetella bronchiseptica RB50 2660073 NP_890922.1 CDS prmA NC_002927.3 4675102 4676025 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(4675102..4676025) Bordetella bronchiseptica RB50 2662086 NP_890923.1 CDS fabG NC_002927.3 4676044 4677390 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(4676044..4677390) Bordetella bronchiseptica RB50 2661935 NP_890924.1 CDS fabE NC_002927.3 4677400 4677849 R composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit complement(4677400..4677849) Bordetella bronchiseptica RB50 2662608 NP_890925.1 CDS aroQ NC_002927.3 4677939 4678373 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(4677939..4678373) Bordetella bronchiseptica RB50 2661123 NP_890926.1 CDS BB4392 NC_002927.3 4678452 4679000 R ortholog of Bordetella pertussis (BX470248) BP2999; thioredoxin complement(4678452..4679000) Bordetella bronchiseptica RB50 2661978 NP_890927.1 CDS mpl NC_002927.3 4679083 4680453 D ortholog of Bordetella pertussis (BX470248) BP3000; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4679083..4680453 Bordetella bronchiseptica RB50 2661046 NP_890928.1 CDS BB4394 NC_002927.3 4680464 4681057 D ortholog of Bordetella pertussis (BX470248) BP3001; hypothetical protein 4680464..4681057 Bordetella bronchiseptica RB50 2661047 NP_890929.1 CDS BB4395 NC_002927.3 4681129 4683012 D ortholog of Bordetella pertussis (BX470248) BP3002; hypothetical protein 4681129..4683012 Bordetella bronchiseptica RB50 2661450 NP_890930.1 CDS BB4396 NC_002927.3 4683050 4683949 D ortholog of Bordetella pertussis (BX470248) BP3003; hypothetical protein 4683050..4683949 Bordetella bronchiseptica RB50 2661451 NP_890931.1 CDS aroE NC_002927.3 4683946 4684809 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 4683946..4684809 Bordetella bronchiseptica RB50 2660716 NP_890932.1 CDS mtgA NC_002927.3 4684830 4685558 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 4684830..4685558 Bordetella bronchiseptica RB50 2660717 NP_890933.1 CDS BB4399 NC_002927.3 4685565 4686833 D ortholog of Bordetella pertussis (BX470248) BP0325; hypothetical protein 4685565..4686833 Bordetella bronchiseptica RB50 2659787 NP_890934.1 CDS apaH NC_002927.3 4686830 4687663 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 4686830..4687663 Bordetella bronchiseptica RB50 2661042 NP_890935.1 CDS BB4401 NC_002927.3 4687700 4688440 R ortholog of Bordetella pertussis (BX470248) BP0323; acyltransferase complement(4687700..4688440) Bordetella bronchiseptica RB50 2659885 NP_890936.1 CDS pyrC NC_002927.3 4688437 4689735 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(4688437..4689735) Bordetella bronchiseptica RB50 2661296 NP_890937.1 CDS pyrB NC_002927.3 4689732 4690685 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(4689732..4690685) Bordetella bronchiseptica RB50 2660325 NP_890938.1 CDS BB4404 NC_002927.3 4690699 4691100 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(4690699..4691100) Bordetella bronchiseptica RB50 2660337 NP_890939.2 CDS BB4405 NC_002927.3 4691093 4691698 R ortholog of Bordetella pertussis (BX470248) BP0319; hypothetical protein complement(4691093..4691698) Bordetella bronchiseptica RB50 2660338 NP_890940.1 CDS rubA NC_002927.3 4691786 4691950 R ortholog of Bordetella pertussis (BX470248) BP0318; rubredoxin complement(4691786..4691950) Bordetella bronchiseptica RB50 2661105 NP_890941.1 CDS thiD NC_002927.3 4692067 4692915 D ortholog of Bordetella pertussis (BX470248) BP0317; phosphomethylpyrimidine kinase 4692067..4692915 Bordetella bronchiseptica RB50 2660525 NP_890942.1 CDS thiE NC_002927.3 4692912 4693565 D Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 4692912..4693565 Bordetella bronchiseptica RB50 2660526 NP_890943.1 CDS hemL NC_002927.3 4693582 4694865 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 4693582..4694865 Bordetella bronchiseptica RB50 2660569 NP_890944.1 CDS BB4410 NC_002927.3 4695105 4696730 D ortholog of Bordetella pertussis (BX470248) BP0314; hypothetical protein 4695105..4696730 Bordetella bronchiseptica RB50 2660504 NP_890945.1 CDS BB4411 NC_002927.3 4696824 4697225 R ortholog of Bordetella pertussis (BX470248) BP0313; hypothetical protein complement(4696824..4697225) Bordetella bronchiseptica RB50 2660505 NP_890946.1 CDS BB4412 NC_002927.3 4697250 4697684 R ortholog of Bordetella pertussis (BX470248) BP0312; 4-hydroxybenzoyl CoA thioesterase complement(4697250..4697684) Bordetella bronchiseptica RB50 2660835 NP_890947.1 CDS BB4413 NC_002927.3 4697686 4699335 R ortholog of Bordetella pertussis (BX470248) BP0311; acid-coenzyme A ligase complement(4697686..4699335) Bordetella bronchiseptica RB50 2660844 NP_890948.1 CDS BB4414 NC_002927.3 4699376 4700545 R ortholog of Bordetella pertussis (BX470248) BP0310; acyl-CoA dehydrogenase complement(4699376..4700545) Bordetella bronchiseptica RB50 2660845 NP_890949.1 CDS BB4415 NC_002927.3 4700548 4701405 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4700548..4701405) Bordetella bronchiseptica RB50 2659425 NP_890950.1 CDS BB4416 NC_002927.3 4701427 4702218 R ortholog of Bordetella pertussis (BX470248) BP0308; short chain dehydrogenase complement(4701427..4702218) Bordetella bronchiseptica RB50 2659426 NP_890951.1 CDS BB4417 NC_002927.3 4702215 4704566 R catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; salicylyl-CoA 5-hydroxylase complement(4702215..4704566) Bordetella bronchiseptica RB50 2661403 NP_890952.1 CDS BB4418 NC_002927.3 4704772 4705365 R ortholog of Bordetella pertussis (BX470248) BP0305; high-affinity branched-chain amino acid transporter ATP-binding protein complement(4704772..4705365) Bordetella bronchiseptica RB50 2663914 NP_890953.1 CDS BB4419 NC_002927.3 4705470 4706264 R ortholog of Bordetella pertussis (BX470248) BP0304; branched-chain amino acid transporter ATP-binding protein complement(4705470..4706264) Bordetella bronchiseptica RB50 2663915 NP_890954.1 CDS BB4420 NC_002927.3 4706261 4707226 R ortholog of Bordetella pertussis (BX470248) BP0303; branched chain amino acid ABC transporter permease complement(4706261..4707226) Bordetella bronchiseptica RB50 2659991 NP_890955.1 CDS BB4421 NC_002927.3 4707230 4708150 R ortholog of Bordetella pertussis (BX470248) BP0302; branched chain amino acid ABC transporter permease complement(4707230..4708150) Bordetella bronchiseptica RB50 2658987 NP_890956.1 CDS BB4422 NC_002927.3 4708247 4709410 R ortholog of Bordetella pertussis (BX470248) BP0301; ABC transporter substrate-binding protein complement(4708247..4709410) Bordetella bronchiseptica RB50 2661259 NP_890957.1 CDS BB4423 NC_002927.3 4709633 4710523 D ortholog of Bordetella pertussis (BX470248) BP0300; esterase 4709633..4710523 Bordetella bronchiseptica RB50 2661260 NP_890958.1 CDS BB4424 NC_002927.3 4710527 4711030 D ortholog of Bordetella pertussis (BX470248) BP0299; MarR family transcriptional regulator 4710527..4711030 Bordetella bronchiseptica RB50 2661261 NP_890959.1 CDS BB4425 NC_002927.3 4711073 4712071 D ortholog of Bordetella pertussis (BX470248) BP0298; hypothetical protein 4711073..4712071 Bordetella bronchiseptica RB50 2660105 NP_890960.1 CDS argJ NC_002927.3 4712139 4713365 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 4712139..4713365 Bordetella bronchiseptica RB50 2659614 NP_890961.1 CDS BB4427 NC_002927.3 4713565 4714431 D ortholog of Bordetella pertussis (BX470248) BP3808; hypothetical protein 4713565..4714431 Bordetella bronchiseptica RB50 2659777 NP_890962.1 CDS BB4428 NC_002927.3 4714424 4715386 D ortholog of Bordetella pertussis (BX470248) BP3809; hypothetical protein 4714424..4715386 Bordetella bronchiseptica RB50 2659778 NP_890963.1 CDS BB4429 NC_002927.3 4715397 4716899 R ortholog of Bordetella pertussis (BX470248) BP3812; outer membrane efflux protein complement(4715397..4716899) Bordetella bronchiseptica RB50 2662075 NP_890964.1 CDS BB4430 NC_002927.3 4716896 4720003 R ortholog of Bordetella pertussis (BX470248) BP3813; AcrB/AcrD/AcrF family protein complement(4716896..4720003) Bordetella bronchiseptica RB50 2659388 NP_890965.1 CDS BB4431 NC_002927.3 4720000 4723101 R ortholog of Bordetella pertussis (BX470248) BP3814; AcrB/AcrD/AcrF family protein complement(4720000..4723101) Bordetella bronchiseptica RB50 2662023 NP_890966.1 CDS BB4432 NC_002927.3 4723098 4724348 R ortholog of Bordetella pertussis (BX470248) BP3815; hemolysin D complement(4723098..4724348) Bordetella bronchiseptica RB50 2662016 NP_890967.1 CDS BB4433 NC_002927.3 4724529 4725290 R ortholog of Bordetella pertussis (BX470248) BP3816; hypothetical protein complement(4724529..4725290) Bordetella bronchiseptica RB50 2661969 NP_890968.1 CDS coaE NC_002927.3 4725323 4725973 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(4725323..4725973) Bordetella bronchiseptica RB50 2662739 NP_890969.1 CDS BB4435 NC_002927.3 4725976 4726815 R ortholog of Bordetella pertussis (BX470248) BP3818; type 4 prepilin-like proteins leader peptide processing enzyme complement(4725976..4726815) Bordetella bronchiseptica RB50 2661872 NP_890970.1 CDS BB4436 NC_002927.3 4727056 4727799 D ortholog of Bordetella pertussis (BX470248) BP3819; hypothetical protein 4727056..4727799 Bordetella bronchiseptica RB50 2661804 NP_890971.1 CDS BB4437 NC_002927.3 4727882 4728229 R ortholog of Bordetella pertussis (BX470248) BP3820; regulatory protein complement(4727882..4728229) Bordetella bronchiseptica RB50 2660361 NP_890972.1 CDS panC NC_002927.3 4728327 4729169 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(4728327..4729169) Bordetella bronchiseptica RB50 2660362 NP_890973.1 CDS BB4439 NC_002927.3 4729214 4730101 R ortholog of Bordetella pertussis (BX470248) BP3822; hypothetical protein complement(4729214..4730101) Bordetella bronchiseptica RB50 2662522 NP_890974.1 CDS BB4440 NC_002927.3 4730128 4730316 R ortholog of Bordetella pertussis (BX470248) BP3823; hypothetical protein complement(4730128..4730316) Bordetella bronchiseptica RB50 2662523 NP_890975.1 CDS BB4441 NC_002927.3 4730414 4731871 D ortholog of Bordetella pertussis (BX470248) BP3824; transporter 4730414..4731871 Bordetella bronchiseptica RB50 2661807 NP_890976.1 CDS glpK NC_002927.3 4731858 4733384 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 4731858..4733384 Bordetella bronchiseptica RB50 2661068 NP_890977.1 CDS BB4443 NC_002927.3 4733403 4733870 R ortholog of Bordetella pertussis (BX470248) BP3826; hypothetical protein complement(4733403..4733870) Bordetella bronchiseptica RB50 2660380 NP_890978.1 CDS BB4444 NC_002927.3 4733870 4734892 R ortholog of Bordetella pertussis (BX470248) BP3827; hypothetical protein complement(4733870..4734892) Bordetella bronchiseptica RB50 2660381 NP_890979.1 CDS BB4445 NC_002927.3 4735013 4735753 R ortholog of Bordetella pertussis (BX470248) BP3828; amino acid ABC transporter ATP-binding protein complement(4735013..4735753) Bordetella bronchiseptica RB50 2661614 NP_890980.1 CDS BB4446 NC_002927.3 4735808 4736908 R ortholog of Bordetella pertussis (BX470248) BP3829; amino acid ABC transporter permease complement(4735808..4736908) Bordetella bronchiseptica RB50 2659462 NP_890981.1 CDS BB4447 NC_002927.3 4736910 4738100 R ortholog of Bordetella pertussis (BX470248) BP3830; amino acid ABC transporter permease complement(4736910..4738100) Bordetella bronchiseptica RB50 2660520 NP_890982.1 CDS BB4448 NC_002927.3 4738220 4739236 R ortholog of Bordetella pertussis (BX470248) BP3831; amino acid ABC transporter substrate-binding protein complement(4738220..4739236) Bordetella bronchiseptica RB50 2660888 NP_890983.1 CDS ftsE NC_002927.3 4739555 4740226 D ortholog of Bordetella pertussis (BX470248) BP3832; cell division ATP-binding protein 4739555..4740226 Bordetella bronchiseptica RB50 2659920 NP_890984.1 CDS BB4450 NC_002927.3 4740223 4741131 D ortholog of Bordetella pertussis (BX470248) BP3833; permease 4740223..4741131 Bordetella bronchiseptica RB50 2659959 NP_890985.1 CDS BB4451 NC_002927.3 4741343 4742023 D catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 4741343..4742023 Bordetella bronchiseptica RB50 2661541 NP_890986.1 CDS BB4452 NC_002927.3 4742114 4745722 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(4742114..4745722) Bordetella bronchiseptica RB50 2660035 NP_890987.1 CDS mutY NC_002927.3 4745871 4746947 D ortholog of Bordetella pertussis (BX470248) BP3836; A/G-specific adenine glycosylase 4745871..4746947 Bordetella bronchiseptica RB50 2660036 NP_890988.1 CDS BB4454 NC_002927.3 4746958 4747767 R ortholog of Bordetella pertussis (BX470248) BP3837; hypothetical protein complement(4746958..4747767) Bordetella bronchiseptica RB50 2659124 NP_890989.1 CDS BB4455 NC_002927.3 4747857 4748630 D ortholog of Bordetella pertussis (BX470248) BP3838; ubiE/COQ5 methyltransferase family protein 4747857..4748630 Bordetella bronchiseptica RB50 2659125 NP_890990.1 CDS metH NC_002927.3 4748752 4752525 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(4748752..4752525) Bordetella bronchiseptica RB50 2659721 NP_890991.1 CDS BB4457 NC_002927.3 4752862 4754751 D ortholog of Bordetella pertussis (BX470248) BP3595; outer membrane protein 4752862..4754751 Bordetella bronchiseptica RB50 2662042 NP_890992.1 CDS BB4458 NC_002927.3 4754763 4755656 D ortholog of Bordetella pertussis (BX470248) BP3596; cobalamin ABC transporter substrate-binding protein 4754763..4755656 Bordetella bronchiseptica RB50 2662043 NP_890993.1 CDS thiG NC_002927.3 4755682 4756557 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4755682..4756557 Bordetella bronchiseptica RB50 2662033 NP_890994.1 CDS thiD NC_002927.3 4756554 4757405 D ortholog of Bordetella pertussis (BX470248) BP3598; phosphomethylpyrimidine kinase 4756554..4757405 Bordetella bronchiseptica RB50 2662034 NP_890995.1 CDS BB4461 NC_002927.3 4757467 4758147 D ortholog of Bordetella pertussis (BX470248) BP3599; protein-L-isoaspartate O-methyltransferase 4757467..4758147 Bordetella bronchiseptica RB50 2662035 NP_890996.1 CDS BB4462 NC_002927.3 4758151 4759470 D ortholog of Bordetella pertussis (BX470248) BP3600; outer membrane protein 4758151..4759470 Bordetella bronchiseptica RB50 2659201 NP_890997.1 CDS BB4463 NC_002927.3 4759491 4759979 R ortholog of Bordetella pertussis (BX470248) BP3602; cytidylyltransferase complement(4759491..4759979) Bordetella bronchiseptica RB50 2659357 NP_890998.1 CDS BB4464 NC_002927.3 4760177 4761055 R ortholog of Bordetella pertussis (BX470248) BP0165; hypothetical protein complement(4760177..4761055) Bordetella bronchiseptica RB50 2659358 NP_890999.1 CDS ubiB NC_002927.3 4761230 4762792 R an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB complement(4761230..4762792) Bordetella bronchiseptica RB50 2663608 NP_891000.1 CDS BB4466 NC_002927.3 4762789 4763424 R ortholog of Bordetella pertussis (BX470248) BP0163; hypothetical protein complement(4762789..4763424) Bordetella bronchiseptica RB50 2662698 NP_891001.1 CDS BB4467 NC_002927.3 4763653 4764675 R ortholog of Bordetella pertussis (BX470248) BP0162; hypothetical protein complement(4763653..4764675) Bordetella bronchiseptica RB50 2662699 NP_891002.1 CDS ubiE NC_002927.3 4764841 4765617 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(4764841..4765617) Bordetella bronchiseptica RB50 2662700 NP_891003.1 CDS phoB NC_002927.3 4765784 4766482 D ortholog of Bordetella pertussis (BX470248) BP0160; phosphate regulon transcriptional regulatory protein 4765784..4766482 Bordetella bronchiseptica RB50 2662760 NP_891004.1 CDS phoR NC_002927.3 4766494 4767804 D ortholog of Bordetella pertussis (BX470248) BP0159; phosphate regulon sensor protein 4766494..4767804 Bordetella bronchiseptica RB50 2662722 NP_891005.1 CDS BB4471 NC_002927.3 4767860 4768537 D ortholog of Bordetella pertussis (BX470248) BP0158; two-component response regulator 4767860..4768537 Bordetella bronchiseptica RB50 2662806 NP_891006.1 CDS BB4472 NC_002927.3 4768534 4769931 D ortholog of Bordetella pertussis (BX470248) BP0157; two-component sensor kinase 4768534..4769931 Bordetella bronchiseptica RB50 2662836 NP_891007.1 CDS BB4473 NC_002927.3 4770037 4770498 D ortholog of Bordetella pertussis (BX470248) BP0156; hypothetical protein 4770037..4770498 Bordetella bronchiseptica RB50 2662892 NP_891008.1 CDS serA NC_002927.3 4770579 4771799 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 4770579..4771799 Bordetella bronchiseptica RB50 2662893 NP_891009.1 CDS brg1 NC_002927.3 4771888 4772763 R ortholog of Bordetella pertussis (BX470248) BP0154; LysR family transcriptional regulator complement(4771888..4772763) Bordetella bronchiseptica RB50 2662993 NP_891010.1 CDS BB4476 NC_002927.3 4772865 4773296 D ortholog of Bordetella pertussis (BX470248) BP0153; dioxygenase 4772865..4773296 Bordetella bronchiseptica RB50 2663170 NP_891011.1 CDS BB4477 NC_002927.3 4773315 4774049 D ortholog of Bordetella pertussis (BX470248) BP0152; hypothetical protein 4773315..4774049 Bordetella bronchiseptica RB50 2663171 NP_891012.1 CDS BB4478 NC_002927.3 4774046 4775059 D ortholog of Bordetella pertussis (BX470248) BP0151; hypothetical protein 4774046..4775059 Bordetella bronchiseptica RB50 2663172 NP_891013.1 CDS BB4479 NC_002927.3 4775056 4775814 D ortholog of Bordetella pertussis (BX470248) BP0150; LamB/YcsF family protein 4775056..4775814 Bordetella bronchiseptica RB50 2663271 NP_891014.1 CDS BB4480 NC_002927.3 4775825 4776607 R ortholog of Bordetella pertussis (BX470248) BP0149; transcriptional regulator complement(4775825..4776607) Bordetella bronchiseptica RB50 2663239 NP_891015.1 CDS BB4481 NC_002927.3 4776774 4777697 D ortholog of Bordetella pertussis (BX470248) BP0148; hypothetical protein 4776774..4777697 Bordetella bronchiseptica RB50 2663240 NP_891016.1 CDS BB4482 NC_002927.3 4777760 4778980 D ortholog of Bordetella pertussis (BX470248) BP0146; hydroxylase 4777760..4778980 Bordetella bronchiseptica RB50 2663468 NP_891017.1 CDS BB4483 NC_002927.3 4779001 4779813 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4779001..4779813 Bordetella bronchiseptica RB50 2663469 NP_891018.1 CDS BB4484 NC_002927.3 4779819 4780754 D ortholog of Bordetella pertussis (BX470248) BP0144; lipase 4779819..4780754 Bordetella bronchiseptica RB50 2663311 NP_891019.1 CDS BB4485 NC_002927.3 4780768 4781961 D ortholog of Bordetella pertussis (BX470248) BP0143; hypothetical protein 4780768..4781961 Bordetella bronchiseptica RB50 2663312 NP_891020.1 CDS BB4486 NC_002927.3 4782049 4782834 R ortholog of Bordetella pertussis (BX470248) BP0142; GntR family transcriptional regulator complement(4782049..4782834) Bordetella bronchiseptica RB50 2661116 NP_891021.1 CDS BB4487 NC_002927.3 4782887 4786849 R ortholog of Bordetella pertussis (BX470248) BP0141; iron-sulfur binding oxidase complement(4782887..4786849) Bordetella bronchiseptica RB50 2661112 NP_891022.1 CDS BB4488 NC_002927.3 4786973 4787509 R ortholog of Bordetella pertussis (BX470248) BP0140; hypothetical protein complement(4786973..4787509) Bordetella bronchiseptica RB50 2661060 NP_891023.1 CDS ilvA NC_002927.3 4787596 4789104 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4787596..4789104 Bordetella bronchiseptica RB50 2659582 NP_891024.1 CDS BB4490 NC_002927.3 4789229 4790335 R ortholog of Bordetella pertussis (BX470248) BP0267+BP0138; outer membrane porin complement(4789229..4790335) Bordetella bronchiseptica RB50 2662082 NP_891025.1 CDS BB4491 NC_002927.3 4790545 4790928 R ortholog of Bordetella pertussis (BX470248) BP0266; hypothetical protein complement(4790545..4790928) Bordetella bronchiseptica RB50 2660793 NP_891026.1 CDS BB4492 NC_002927.3 4791172 4792062 D ortholog of Bordetella pertussis (BX470248) BP0265; LysR family transcriptional regulator 4791172..4792062 Bordetella bronchiseptica RB50 2660760 NP_891027.1 CDS apt NC_002927.3 4792075 4792650 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(4792075..4792650) Bordetella bronchiseptica RB50 2659497 NP_891028.1 CDS BB4494 NC_002927.3 4792686 4794386 R ortholog of Bordetella pertussis (BX470248) BP0263; ABC transporter ATP-binding protein complement(4792686..4794386) Bordetella bronchiseptica RB50 2660937 NP_891029.1 CDS BB4495 NC_002927.3 4794383 4796134 R ortholog of Bordetella pertussis (BX470248) BP0262; ABC transporter ATP-binding protein complement(4794383..4796134) Bordetella bronchiseptica RB50 2661964 NP_891030.1 CDS BB4496 NC_002927.3 4796131 4796256 R ortholog of Bordetella pertussis (BX470248) BP0261; hypothetical protein complement(4796131..4796256) Bordetella bronchiseptica RB50 2659985 NP_891031.1 CDS cydB NC_002927.3 4796270 4797424 R ortholog of Bordetella pertussis (BX470248) BP0260; cytochrome D ubiquinol oxidase subunit II complement(4796270..4797424) Bordetella bronchiseptica RB50 2661980 NP_891032.1 CDS cydA NC_002927.3 4797440 4799059 R ortholog of Bordetella pertussis (BX470248) BP0259; cytochrome D ubiquinol oxidase subunit I complement(4797440..4799059) Bordetella bronchiseptica RB50 2662105 NP_891033.1 CDS BB4499 NC_002927.3 4799143 4799688 R ortholog of Bordetella pertussis (BX470248) BP0258; hypothetical protein complement(4799143..4799688) Bordetella bronchiseptica RB50 2659277 NP_891034.1 CDS purT NC_002927.3 4799831 4801051 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(4799831..4801051) Bordetella bronchiseptica RB50 2663424 NP_891035.1 CDS BB4501 NC_002927.3 4801157 4802146 D ortholog of Bordetella pertussis (BX470248) BP0701; hypothetical protein 4801157..4802146 Bordetella bronchiseptica RB50 2663425 NP_891036.1 CDS BB4502 NC_002927.3 4802143 4802751 D ortholog of Bordetella pertussis (BX470248) BP0700; hydrolase 4802143..4802751 Bordetella bronchiseptica RB50 2663833 NP_891037.1 CDS BB4503 NC_002927.3 4802764 4803393 D ortholog of Bordetella pertussis (BX470248) BP0699; hypothetical protein 4802764..4803393 Bordetella bronchiseptica RB50 2660899 NP_891038.1 CDS BB4504 NC_002927.3 4803390 4804010 D ortholog of Bordetella pertussis (BX470248) BP0698; hypothetical protein 4803390..4804010 Bordetella bronchiseptica RB50 2660900 NP_891039.1 CDS BB4505 NC_002927.3 4804042 4804833 D ortholog of Bordetella pertussis (BX470248) BP0697; ABC transporter 4804042..4804833 Bordetella bronchiseptica RB50 2661087 NP_891040.1 CDS rpoN NC_002927.3 4805069 4805407 D ortholog of Bordetella pertussis (BX470248) BP0696; sigma(54) modulation protein 4805069..4805407 Bordetella bronchiseptica RB50 2661078 NP_891041.1 CDS rpoP NC_002927.3 4805675 4806139 D ortholog of Bordetella pertussis (BX470248) BP0694; nitrogen regulatory IIA protein 4805675..4806139 Bordetella bronchiseptica RB50 2661079 NP_891042.1 CDS BB4508 NC_002927.3 4806158 4807084 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 4806158..4807084 Bordetella bronchiseptica RB50 2661069 NP_891043.1 CDS BB4509 NC_002927.3 4807188 4808474 R ortholog of Bordetella pertussis (BX470248) BP0692; cytochrome C complement(4807188..4808474) Bordetella bronchiseptica RB50 2661043 NP_891044.1 CDS BB4510 NC_002927.3 4808485 4809237 R ortholog of Bordetella pertussis (BX470248) BP0691; cytochrome C complement(4808485..4809237) Bordetella bronchiseptica RB50 2660341 NP_891045.1 CDS BB4511 NC_002927.3 4809409 4810281 D ortholog of Bordetella pertussis (BX470248) BP0690; hypothetical protein 4809409..4810281 Bordetella bronchiseptica RB50 2660795 NP_891046.1 CDS BB4512 NC_002927.3 4810278 4811228 D ortholog of Bordetella pertussis (BX470248) BP0689; lipoprotein 4810278..4811228 Bordetella bronchiseptica RB50 2660901 NP_891047.1 CDS ogt NC_002927.3 4811225 4811797 R ortholog of Bordetella pertussis (BX470248) BP0391; methylated-DNA--protein-cysteine methyltransferase complement(4811225..4811797) Bordetella bronchiseptica RB50 2660902 NP_891048.1 CDS BB4514 NC_002927.3 4811794 4812732 R ortholog of Bordetella pertussis (BX470248) BP0390; tetrapyrrole methylase complement(4811794..4812732) Bordetella bronchiseptica RB50 2661135 NP_891049.1 CDS BB4515 NC_002927.3 4812799 4813332 D ortholog of Bordetella pertussis (BX470248) BP0389; hypothetical protein 4812799..4813332 Bordetella bronchiseptica RB50 2660459 NP_891050.1 CDS BB4516 NC_002927.3 4813332 4813934 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 4813332..4813934 Bordetella bronchiseptica RB50 2660635 NP_891051.1 CDS BB4517 NC_002927.3 4813931 4814674 D ortholog of Bordetella pertussis (BX470248) BP0387; hypothetical protein 4813931..4814674 Bordetella bronchiseptica RB50 2660636 NP_891052.1 CDS BB4518 NC_002927.3 4814671 4815162 D ortholog of Bordetella pertussis (BX470248) BP0386; thioredoxin 4814671..4815162 Bordetella bronchiseptica RB50 2660527 NP_891053.1 CDS BB4519 NC_002927.3 4815319 4816107 R ortholog of Bordetella pertussis (BX470248) BP0385; hypothetical protein complement(4815319..4816107) Bordetella bronchiseptica RB50 2660644 NP_891054.1 CDS argB NC_002927.3 4816369 4817271 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4816369..4817271 Bordetella bronchiseptica RB50 2660645 NP_891055.1 CDS BB4521 NC_002927.3 4817271 4818017 D ortholog of Bordetella pertussis (BX470248) BP0382; hydrolase 4817271..4818017 Bordetella bronchiseptica RB50 2660746 NP_891056.2 CDS slmA NC_002927.3 4818067 4818642 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 4818067..4818642 Bordetella bronchiseptica RB50 2660747 NP_891057.1 CDS BB4523 NC_002927.3 4818855 4820348 D ortholog of Bordetella pertussis (BX470248) BP0380; Sodium:sulfate symportert 4818855..4820348 Bordetella bronchiseptica RB50 2660752 NP_891058.1 CDS ldh NC_002927.3 4820359 4821414 D ortholog of Bordetella pertussis (BX470248) BP0379; L-lactate dehydrogenase 4820359..4821414 Bordetella bronchiseptica RB50 2659960 NP_891059.1 CDS mrdB NC_002927.3 4821440 4822576 R ortholog of Bordetella pertussis (BX470248) BP0378; rod shape-determining protein complement(4821440..4822576) Bordetella bronchiseptica RB50 2661582 NP_891060.1 CDS mrdA NC_002927.3 4822573 4824525 R ortholog of Bordetella pertussis (BX470248) BP0377; penicillin-binding protein 2 complement(4822573..4824525) Bordetella bronchiseptica RB50 2659557 NP_891061.1 CDS mreD NC_002927.3 4824539 4825102 R ortholog of Bordetella pertussis (BX470248) BP0376; rod shape-determining protein complement(4824539..4825102) Bordetella bronchiseptica RB50 2662219 NP_891062.1 CDS mreC NC_002927.3 4825089 4825973 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(4825089..4825973) Bordetella bronchiseptica RB50 2660427 NP_891063.1 CDS mreB NC_002927.3 4826062 4827105 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(4826062..4827105) Bordetella bronchiseptica RB50 2660428 NP_891064.2 CDS gatC NC_002927.3 4827336 4827644 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 4827336..4827644 Bordetella bronchiseptica RB50 2658954 NP_891065.1 CDS gatA NC_002927.3 4827647 4829185 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 4827647..4829185 Bordetella bronchiseptica RB50 2658955 NP_891066.1 CDS gatB NC_002927.3 4829188 4830642 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 4829188..4830642 Bordetella bronchiseptica RB50 2659343 NP_891067.1 CDS pyrE NC_002927.3 4830726 4831433 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(4830726..4831433) Bordetella bronchiseptica RB50 2658986 NP_891068.1 CDS BB4534 NC_002927.3 4831538 4832326 D ortholog of Bordetella pertussis (BX470248) BP0369; endonuclease 4831538..4832326 Bordetella bronchiseptica RB50 2659095 NP_891069.1 CDS gdhA NC_002927.3 4832699 4834093 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 4832699..4834093 Bordetella bronchiseptica RB50 2661979 NP_891070.1 CDS BB4536 NC_002927.3 4834130 4834702 R ortholog of Bordetella pertussis (BX470248) BP0367; hypothetical protein complement(4834130..4834702) Bordetella bronchiseptica RB50 2659085 NP_891071.1 CDS BB4537 NC_002927.3 4834959 4835825 D ortholog of Bordetella pertussis (BX470248) BP0366; universal stress protein 4834959..4835825 Bordetella bronchiseptica RB50 2659222 NP_891072.1 CDS BB4538 NC_002927.3 4835908 4836822 R LysR family transcriptional regulator complement(4835908..4836822) Bordetella bronchiseptica RB50 2660425 NP_891073.1 CDS BB4539 NC_002927.3 4836919 4838010 D tartrate dehydrogenase 4836919..4838010 Bordetella bronchiseptica RB50 2659575 NP_891074.1 CDS BB4540 NC_002927.3 4838053 4839444 R hypothetical protein complement(4838053..4839444) Bordetella bronchiseptica RB50 2660597 NP_891075.1 CDS BB4541 NC_002927.3 4839517 4839963 R hypothetical protein complement(4839517..4839963) Bordetella bronchiseptica RB50 2660598 NP_891076.1 CDS BB4542 NC_002927.3 4840139 4840810 D response regulatory protein 4840139..4840810 Bordetella bronchiseptica RB50 2661128 NP_891077.1 CDS BB4543 NC_002927.3 4840807 4842222 D sensor kinase 4840807..4842222 Bordetella bronchiseptica RB50 2661108 NP_891078.1 CDS BB4544 NC_002927.3 4842187 4843143 R LysR family transcriptional regulator complement(4842187..4843143) Bordetella bronchiseptica RB50 2661106 NP_891079.1 CDS BB4545 NC_002927.3 4843283 4844308 D catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 4843283..4844308 Bordetella bronchiseptica RB50 2660394 NP_891080.1 CDS BB4546 NC_002927.3 4844402 4845301 D ortholog of Bordetella pertussis (BX470248) BP0057; amino-acid ABC transporter binding protein precursor 4844402..4845301 Bordetella bronchiseptica RB50 2659850 NP_891081.1 CDS gltJ NC_002927.3 4845437 4846198 D ortholog of Bordetella pertussis (BX470248) BP0056; glutamate/aspartate transport system permease 4845437..4846198 Bordetella bronchiseptica RB50 2659851 NP_891082.1 CDS gltK NC_002927.3 4846195 4846884 D ortholog of Bordetella pertussis (BX470248) BP0055; glutamate/aspartate transport system permease 4846195..4846884 Bordetella bronchiseptica RB50 2661316 NP_891083.1 CDS gltL NC_002927.3 4846909 4847643 D ortholog of Bordetella pertussis (BX470248) BP0054; glutamate/aspartate transport ATP-binding protein 4846909..4847643 Bordetella bronchiseptica RB50 2661613 NP_891084.1 CDS BB4550 NC_002927.3 4847649 4848383 D ortholog of Bordetella pertussis (BX470248) BP0053; aspartate/glutamate racemase 4847649..4848383 Bordetella bronchiseptica RB50 2659031 NP_891085.1 CDS BB4551 NC_002927.3 4848441 4849505 R ortholog of Bordetella pertussis (BX470248) BP0051; outer membrane porin protein precursor complement(4848441..4849505) Bordetella bronchiseptica RB50 2658978 NP_891086.1 CDS ampG NC_002927.3 4849617 4850828 R ortholog of Bordetella pertussis (BX470248) BP0050; muropeptide transporter complement(4849617..4850828) Bordetella bronchiseptica RB50 2658979 NP_891087.1 CDS BB4553 NC_002927.3 4850953 4851567 R ortholog of Bordetella pertussis (BX470248) BP0048; hypothetical protein complement(4850953..4851567) Bordetella bronchiseptica RB50 2661685 NP_891088.1 CDS metX NC_002927.3 4851564 4852811 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(4851564..4852811) Bordetella bronchiseptica RB50 2660144 NP_891089.1 CDS BB4555 NC_002927.3 4852975 4853982 D ortholog of Bordetella pertussis (BX470248) BP0046; malate/L-lactate dehydrogenase 4852975..4853982 Bordetella bronchiseptica RB50 2660145 NP_891090.1 CDS BB4556 NC_002927.3 4853986 4854879 R ortholog of Bordetella pertussis (BX470248) BP0045; hypothetical protein complement(4853986..4854879) Bordetella bronchiseptica RB50 2662093 NP_891091.1 CDS BB4557 NC_002927.3 4855007 4855243 D ortholog of Bordetella pertussis (BX470248) BP0044; transcriptional regulator 4855007..4855243 Bordetella bronchiseptica RB50 2662094 NP_891092.1 CDS BB4558 NC_002927.3 4855215 4855850 R ortholog of Bordetella pertussis (BX470248) BP0043; hypothetical protein complement(4855215..4855850) Bordetella bronchiseptica RB50 2659295 NP_891093.1 CDS BB4559 NC_002927.3 4855876 4856709 D ortholog of Bordetella pertussis (BX470248) BP0042; lipase 4855876..4856709 Bordetella bronchiseptica RB50 2662626 NP_891094.1 CDS gshA NC_002927.3 4856743 4858326 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 4856743..4858326 Bordetella bronchiseptica RB50 2662627 NP_891095.1 CDS BB4561 NC_002927.3 4858392 4858910 D outer membrane lipoprotein 4858392..4858910 Bordetella bronchiseptica RB50 2662628 NP_891096.1 CDS BB4562 NC_002927.3 4858907 4859875 R hypothetical protein complement(4858907..4859875) Bordetella bronchiseptica RB50 2660382 NP_891097.1 CDS BB4563 NC_002927.3 4859905 4860891 R hypothetical protein complement(4859905..4860891) Bordetella bronchiseptica RB50 2660383 NP_891098.1 CDS BB4564 NC_002927.3 4861026 4861994 R ortholog of Bordetella pertussis (BX470248) BP2849; LysR family transcriptional regulator complement(4861026..4861994) Bordetella bronchiseptica RB50 2660384 NP_891099.1 CDS panB NC_002927.3 4862064 4862900 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 4862064..4862900 Bordetella bronchiseptica RB50 2661072 NP_891100.1 CDS BB4566 NC_002927.3 4863378 4864523 D ortholog of Bordetella pertussis (BX470248) BP2851; outer membrane porin protein precursor 4863378..4864523 Bordetella bronchiseptica RB50 2661073 NP_891101.1 CDS BB4567 NC_002927.3 4864657 4865703 R LacI family transcriptional regulator complement(4864657..4865703) Bordetella bronchiseptica RB50 2660986 NP_891102.1 CDS BB4568 NC_002927.3 4865831 4866703 D branched-chain amino acid transport system permease 4865831..4866703 Bordetella bronchiseptica RB50 2661065 NP_891103.1 CDS BB4569 NC_002927.3 4866732 4867661 D branched-chain amino acid transport system permease 4866732..4867661 Bordetella bronchiseptica RB50 2661221 NP_891104.1 CDS BB4570 NC_002927.3 4867664 4868428 D high-affinity branched-chain amino acid transport ATP-binding protein 4867664..4868428 Bordetella bronchiseptica RB50 2661179 NP_891105.1 CDS BB4571 NC_002927.3 4868421 4869134 D high-affinity branched-chain amino acid transport ATP-binding protein 4868421..4869134 Bordetella bronchiseptica RB50 2659441 NP_891106.1 CDS BB4572 NC_002927.3 4869195 4870340 D ortholog of Bordetella pertussis (BX470248) BP3322; binding-protein-dependent transport protein 4869195..4870340 Bordetella bronchiseptica RB50 2660887 NP_891107.1 CDS BB4575 NC_002927.3 4871780 4872370 R ortholog of Bordetella pertussis (BX470248) BP3320; hypothetical protein complement(4871780..4872370) Bordetella bronchiseptica RB50 2661061 NP_891108.1 CDS BB4576 NC_002927.3 4872661 4873455 D ortholog of Bordetella pertussis (BX470248) BP3319; IclR family transcriptional regulator 4872661..4873455 Bordetella bronchiseptica RB50 2661021 NP_891109.1 CDS BB4577 NC_002927.3 4873472 4874632 D ortholog of Bordetella pertussis (BX470248) BP3318; hypothetical protein 4873472..4874632 Bordetella bronchiseptica RB50 2661022 NP_891110.1 CDS BB4578 NC_002927.3 4874629 4875372 D ortholog of Bordetella pertussis (BX470248) BP3317; enoyl-CoA hydratase 4874629..4875372 Bordetella bronchiseptica RB50 2660786 NP_891111.1 CDS copB NC_002927.3 4875369 4876244 R ortholog of Bordetella pertussis (BX470248) BP3316; copper resistance protein complement(4875369..4876244) Bordetella bronchiseptica RB50 2660787 NP_891112.1 CDS copA NC_002927.3 4876291 4878048 R ortholog of Bordetella pertussis (BX470248) BP3315; copper resitance protein complement(4876291..4878048) Bordetella bronchiseptica RB50 2660705 NP_891113.1 CDS BB4581 NC_002927.3 4878092 4878586 R ortholog of Bordetella pertussis (BX470248) BP3314; blue copper protein complement(4878092..4878586) Bordetella bronchiseptica RB50 2660879 NP_891114.1 CDS BB4582 NC_002927.3 4879101 4880081 D cytochrome c 4879101..4880081 Bordetella bronchiseptica RB50 2659791 NP_891115.1 CDS paaH NC_002927.3 4880350 4881864 R converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxyacyl-CoA dehydrogenase complement(4880350..4881864) Bordetella bronchiseptica RB50 2659845 NP_891116.1 CDS BB4584 NC_002927.3 4881948 4883177 R ortholog of Bordetella pertussis (BX470248) BP3309; hypothetical protein complement(4881948..4883177) Bordetella bronchiseptica RB50 2660491 NP_891117.1 CDS BB4585 NC_002927.3 4883290 4884438 R ortholog of Bordetella pertussis (BX470248) BP3308; acyl-CoA dehydrogenase complement(4883290..4884438) Bordetella bronchiseptica RB50 2659564 NP_891118.1 CDS BB4586 NC_002927.3 4884483 4885145 R ortholog of Bordetella pertussis (BX470248) BP3307; TetR family transcriptional regulator complement(4884483..4885145) Bordetella bronchiseptica RB50 2661437 NP_891119.1 CDS BB4587 NC_002927.3 4885259 4886251 D ortholog of Bordetella pertussis (BX470248) BP3306; hypothetical protein 4885259..4886251 Bordetella bronchiseptica RB50 2661438 NP_891120.1 CDS BB4588 NC_002927.3 4886248 4886985 D ortholog of Bordetella pertussis (BX470248) BP3305; enoyl-CoA hydratase 4886248..4886985 Bordetella bronchiseptica RB50 2659859 NP_891121.1 CDS BB4589 NC_002927.3 4887065 4887886 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4887065..4887886) Bordetella bronchiseptica RB50 2659860 NP_891122.1 CDS BB4590 NC_002927.3 4887975 4888835 D ortholog of Bordetella pertussis (BX470248) BP3303; hypothetical protein 4887975..4888835 Bordetella bronchiseptica RB50 2660404 NP_891123.1 CDS BB4591 NC_002927.3 4888963 4889199 D ortholog of Bordetella pertussis (BX470248) BP3302; hypothetical protein 4888963..4889199 Bordetella bronchiseptica RB50 2661987 NP_891124.1 CDS BB4592 NC_002927.3 4889496 4891124 D ortholog of Bordetella pertussis (BX470248) BP3301; binding-protein-dependent transport protein 4889496..4891124 Bordetella bronchiseptica RB50 2661988 NP_891125.1 CDS BB4593 NC_002927.3 4891173 4892216 D ortholog of Bordetella pertussis (BX470248) BP3300; hypothetical protein 4891173..4892216 Bordetella bronchiseptica RB50 2659530 NP_891126.1 CDS BB4594 NC_002927.3 4892275 4893252 D ortholog of Bordetella pertussis (BX470248) BP3299; binding-protein-dependent transport permease 4892275..4893252 Bordetella bronchiseptica RB50 2659531 NP_891127.1 CDS BB4595 NC_002927.3 4893260 4894180 D ortholog of Bordetella pertussis (BX470248) BP3298; binding-protein-dependent transport permease 4893260..4894180 Bordetella bronchiseptica RB50 2662238 NP_891128.1 CDS BB4596 NC_002927.3 4894177 4895160 D ortholog of Bordetella pertussis (BX470248) BP3297; oligopeptide transport ATP-binding protein 4894177..4895160 Bordetella bronchiseptica RB50 2659402 NP_891129.1 CDS BB4597 NC_002927.3 4895157 4896167 D ortholog of Bordetella pertussis (BX470248) BP3297; oligopeptide transport ATP-binding protein 4895157..4896167 Bordetella bronchiseptica RB50 2661294 NP_891130.1 CDS BB4598 NC_002927.3 4896170 4897075 D ortholog of Bordetella pertussis (BX470248) BP3296; hypothetical protein 4896170..4897075 Bordetella bronchiseptica RB50 2660081 NP_891131.1 CDS BB4599 NC_002927.3 4897119 4898252 D ortholog of Bordetella pertussis (BX470248) BP3295; peptidase 4897119..4898252 Bordetella bronchiseptica RB50 2660082 NP_891132.1 CDS rep NC_002927.3 4898383 4900452 R ortholog of Bordetella pertussis (BX470248) BP3293; ATP-dependent DNA helicase complement(4898383..4900452) Bordetella bronchiseptica RB50 2661149 NP_891133.1 CDS BB4601 NC_002927.3 4900495 4902597 R ortholog of Bordetella pertussis (BX470248) BP3292; primosomal protein complement(4900495..4902597) Bordetella bronchiseptica RB50 2661995 NP_891134.1 CDS hemE NC_002927.3 4902904 4903980 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(4902904..4903980) Bordetella bronchiseptica RB50 2662137 NP_891135.1 CDS BB4603 NC_002927.3 4904056 4904937 R ortholog of Bordetella pertussis (BX470248) BP3290; hypothetical protein complement(4904056..4904937) Bordetella bronchiseptica RB50 2661955 NP_891136.1 CDS atpC NC_002927.3 4905120 4905542 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(4905120..4905542) Bordetella bronchiseptica RB50 2661956 NP_891137.1 CDS atpD NC_002927.3 4905552 4906952 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(4905552..4906952) Bordetella bronchiseptica RB50 2662595 NP_891138.1 CDS atpG NC_002927.3 4906995 4907900 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(4906995..4907900) Bordetella bronchiseptica RB50 2660928 NP_891139.1 CDS atpA NC_002927.3 4907999 4909540 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(4907999..4909540) Bordetella bronchiseptica RB50 2659829 NP_891140.1 CDS atpH NC_002927.3 4909575 4910114 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(4909575..4910114) Bordetella bronchiseptica RB50 2659905 NP_891141.1 CDS atpF NC_002927.3 4910127 4910597 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(4910127..4910597) Bordetella bronchiseptica RB50 2659975 NP_891142.1 CDS atpE NC_002927.3 4910735 4910977 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(4910735..4910977) Bordetella bronchiseptica RB50 2661518 NP_891143.1 CDS atpB NC_002927.3 4911094 4911975 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(4911094..4911975) Bordetella bronchiseptica RB50 2659415 NP_891144.1 CDS BB4612 NC_002927.3 4912048 4912368 R ortholog of Bordetella pertussis (BX470248) BP3281; inner membrane ATP synthase complement(4912048..4912368) Bordetella bronchiseptica RB50 2659409 NP_891145.1 CDS BB4613 NC_002927.3 4912640 4914148 R ortholog of Bordetella pertussis (BX470248) BP3280; hypothetical protein complement(4912640..4914148) Bordetella bronchiseptica RB50 2660455 NP_891146.1 CDS BB4614 NC_002927.3 4914445 4915221 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4914445..4915221) Bordetella bronchiseptica RB50 2660456 NP_891147.1 CDS BB4615 NC_002927.3 4915256 4917028 D ortholog of Bordetella pertussis (BX470248) BP3276; hypothetical protein 4915256..4917028 Bordetella bronchiseptica RB50 2660315 NP_891148.1 CDS BB4616 NC_002927.3 4917030 4917932 R ortholog of Bordetella pertussis (BX470248) BP3275; oxidoreductase complement(4917030..4917932) Bordetella bronchiseptica RB50 2661271 NP_891149.1 CDS folB NC_002927.3 4918057 4918416 D ortholog of Bordetella pertussis (BX470248) BP3274; dihydroneopterin aldolase 4918057..4918416 Bordetella bronchiseptica RB50 2661150 NP_891150.1 CDS BB4618 NC_002927.3 4918448 4919410 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 4918448..4919410 Bordetella bronchiseptica RB50 2661151 NP_891151.1 CDS BB4619 NC_002927.3 4919423 4920391 R ortholog of Bordetella pertussis (BX470248) BP3271; 2-hydroxyacid dehydrogenase complement(4919423..4920391) Bordetella bronchiseptica RB50 2662178 NP_891152.1 CDS dsbC NC_002927.3 4920419 4921258 R ortholog of Bordetella pertussis (BX470248) BP3270; thiol:disulfide interchange protein complement(4920419..4921258) Bordetella bronchiseptica RB50 2659018 NP_891153.1 CDS BB4621 NC_002927.3 4921255 4922424 R ortholog of Bordetella pertussis (BX470248) BP3269; ubiquinone biosynthesis hydroxylase family protein complement(4921255..4922424) Bordetella bronchiseptica RB50 2662139 NP_891154.1 CDS BB4622 NC_002927.3 4922421 4923710 R ortholog of Bordetella pertussis (BX470248) BP3268; membrane-bound transglycosylase complement(4922421..4923710) Bordetella bronchiseptica RB50 2662120 NP_891155.1 CDS apaG NC_002927.3 4923753 4924127 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(4923753..4924127) Bordetella bronchiseptica RB50 2661147 NP_891156.1 CDS rpe NC_002927.3 4924233 4924970 D ortholog of Bordetella pertussis (BX470248) BP3266; ribulose-phosphate 3-epimerase 4924233..4924970 Bordetella bronchiseptica RB50 2661148 NP_891157.1 CDS gph NC_002927.3 4924978 4925682 D ortholog of Bordetella pertussis (BX470248) BP3265; phosphoglycolate phosphatase 4924978..4925682 Bordetella bronchiseptica RB50 2659430 NP_891158.1 CDS trpE NC_002927.3 4925946 4927466 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase I 4925946..4927466 Bordetella bronchiseptica RB50 2660469 NP_891159.1 CDS trpG NC_002927.3 4927523 4928086 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase II 4927523..4928086 Bordetella bronchiseptica RB50 2660470 NP_891160.1 CDS trpD NC_002927.3 4928105 4929136 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 4928105..4929136 Bordetella bronchiseptica RB50 2660440 NP_891161.1 CDS trpC NC_002927.3 4929133 4929921 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 4929133..4929921 Bordetella bronchiseptica RB50 2660481 NP_891162.1 CDS BB4630 NC_002927.3 4930097 4930861 R short chain dehydrogenase complement(4930097..4930861) Bordetella bronchiseptica RB50 2660570 NP_891163.1 CDS BB4631 NC_002927.3 4930898 4931527 R 2-hydroxychromene-2-carboxylate isomerase complement(4930898..4931527) Bordetella bronchiseptica RB50 2661026 NP_891164.1 CDS BB4632 NC_002927.3 4931524 4931790 R hypothetical protein complement(4931524..4931790) Bordetella bronchiseptica RB50 2661027 NP_891165.1 CDS BB4633 NC_002927.3 4931920 4932849 D LysR family transcriptional regulator 4931920..4932849 Bordetella bronchiseptica RB50 2661028 NP_891166.1 CDS BB4634 NC_002927.3 4932890 4933876 D metallo-beta-lactamase superfamily protein 4932890..4933876 Bordetella bronchiseptica RB50 2663256 NP_891167.1 CDS BB4635 NC_002927.3 4934026 4935444 D ortholog of Bordetella pertussis (BX470248) BP3258; hypothetical protein 4934026..4935444 Bordetella bronchiseptica RB50 2662632 NP_891168.1 CDS BB4636 NC_002927.3 4935512 4936027 D acyl-CoA thioester hydrolase 4935512..4936027 Bordetella bronchiseptica RB50 2662633 NP_891169.1 CDS BB4637 NC_002927.3 4936034 4937029 R hypothetical protein complement(4936034..4937029) Bordetella bronchiseptica RB50 2661031 NP_891170.1 CDS BB4638 NC_002927.3 4937032 4937808 R polysaccharide deacetylase complement(4937032..4937808) Bordetella bronchiseptica RB50 2660980 NP_891171.1 CDS BB4639 NC_002927.3 4937822 4938811 R ortholog of Bordetella pertussis (BX470248) BP0364; hypothetical protein complement(4937822..4938811) Bordetella bronchiseptica RB50 2660981 NP_891172.1 CDS BB4640 NC_002927.3 4939003 4939743 R ortholog of Bordetella pertussis (BX470248) BP0363; amino acid ABC transporter substrate-binding protein complement(4939003..4939743) Bordetella bronchiseptica RB50 2660366 NP_891173.1 CDS BB4641 NC_002927.3 4939960 4940970 R ortholog of Bordetella pertussis (BX470248) BP0362; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(4939960..4940970) Bordetella bronchiseptica RB50 2660367 NP_891174.1 CDS BB4642 NC_002927.3 4940989 4941468 R ortholog of Bordetella pertussis (BX470248) BP0361; hypothetical protein complement(4940989..4941468) Bordetella bronchiseptica RB50 2659037 NP_891175.1 CDS BB4643 NC_002927.3 4941493 4942953 R ortholog of Bordetella pertussis (BX470248) BP0360; aldehyde dehydrogenase complement(4941493..4942953) Bordetella bronchiseptica RB50 2659038 NP_891176.1 CDS BB4644 NC_002927.3 4942998 4943729 R ortholog of Bordetella pertussis (BX470248) BP0359; hypothetical protein complement(4942998..4943729) Bordetella bronchiseptica RB50 2661932 NP_891177.1 CDS BB4645 NC_002927.3 4943849 4945357 R ortholog of Bordetella pertussis (BX470248) BP0358; hypothetical protein complement(4943849..4945357) Bordetella bronchiseptica RB50 2662009 NP_891178.1 CDS BB4646 NC_002927.3 4945587 4946330 D ortholog of Bordetella pertussis (BX470248) BP0357; hypothetical protein 4945587..4946330 Bordetella bronchiseptica RB50 2659073 NP_891179.1 CDS BB4647 NC_002927.3 4946429 4947151 D ortholog of Bordetella pertussis (BX470248) BP0356; GntR family transcriptional regulator 4946429..4947151 Bordetella bronchiseptica RB50 2661263 NP_891180.1 CDS BB4648 NC_002927.3 4947160 4948092 R ortholog of Bordetella pertussis (BX470248) BP0354; ornithine cyclodeaminase complement(4947160..4948092) Bordetella bronchiseptica RB50 2661264 NP_891181.1 CDS BB4649 NC_002927.3 4948103 4948408 R ortholog of Bordetella pertussis (BX470248) BP0353; ferredoxin complement(4948103..4948408) Bordetella bronchiseptica RB50 2659339 NP_891182.1 CDS BB4650 NC_002927.3 4948427 4948726 R ortholog of Bordetella pertussis (BX470248) BP0352; hypothetical protein complement(4948427..4948726) Bordetella bronchiseptica RB50 2662162 NP_891183.1 CDS BB4651 NC_002927.3 4948728 4949045 R ortholog of Bordetella pertussis (BX470248) BP0351; ferredoxin complement(4948728..4949045) Bordetella bronchiseptica RB50 2662163 NP_891184.1 CDS BB4652 NC_002927.3 4949359 4949550 D ortholog of Bordetella pertussis (BX470248) BP0350; hypothetical protein 4949359..4949550 Bordetella bronchiseptica RB50 2659191 NP_891185.1 CDS hurI NC_002927.3 4949724 4950233 D ortholog of Bordetella pertussis (BX470248) BP0349; heme uptake regulator 4949724..4950233 Bordetella bronchiseptica RB50 2659192 NP_891186.1 CDS hurR NC_002927.3 4950269 4951186 D ortholog of Bordetella pertussis (BX470248) BP0348; heme uptake transmembrane sensor 4950269..4951186 Bordetella bronchiseptica RB50 2659847 NP_891187.1 CDS bhuR NC_002927.3 4951319 4953931 D ortholog of Bordetella pertussis (BX470248) BP0347; outer membrane heme receptor 4951319..4953931 Bordetella bronchiseptica RB50 2659848 NP_891188.1 CDS bhuS NC_002927.3 4953989 4955035 D ortholog of Bordetella pertussis (BX470248) BP0346; hemin transport protein 4953989..4955035 Bordetella bronchiseptica RB50 2659856 NP_891189.1 CDS bhuT NC_002927.3 4955032 4955895 D ortholog of Bordetella pertussis (BX470248) BP0345; hemin binding protein 4955032..4955895 Bordetella bronchiseptica RB50 2659857 NP_891190.1 CDS bhuU NC_002927.3 4955939 4956883 D ortholog of Bordetella pertussis (BX470248) BP0344; hemin permease 4955939..4956883 Bordetella bronchiseptica RB50 2659858 NP_891191.1 CDS hmuV NC_002927.3 4956898 4957686 D with HmuTU is involved in the transport of hemin; hemin importer ATP-binding protein 4956898..4957686 Bordetella bronchiseptica RB50 2659915 NP_891192.1 CDS BB4660 NC_002927.3 4957690 4958190 R ortholog of Bordetella pertussis (BX470248) BP0342; hypothetical protein complement(4957690..4958190) Bordetella bronchiseptica RB50 2659934 NP_891193.1 CDS BB4661 NC_002927.3 4958335 4959057 D ortholog of Bordetella pertussis (BX470248) BP0341; hypothetical protein 4958335..4959057 Bordetella bronchiseptica RB50 2659935 NP_891194.1 CDS alkB NC_002927.3 4959069 4959719 D ortholog of Bordetella pertussis (BX470248) BP0340; alkylated DNA repair protein 4959069..4959719 Bordetella bronchiseptica RB50 2659936 NP_891195.1 CDS ogt NC_002927.3 4959740 4960327 D ortholog of Bordetella pertussis (BX470248) BP0339; methylated-DNA--protein-cysteine methyltransferase 4959740..4960327 Bordetella bronchiseptica RB50 2661358 NP_891196.1 CDS BB4664 NC_002927.3 4960422 4961564 D ortholog of Bordetella pertussis (BX470248) BP0338; hypothetical protein 4960422..4961564 Bordetella bronchiseptica RB50 2661359 NP_891197.1 CDS BB4665 NC_002927.3 4961574 4962404 R ortholog of Bordetella pertussis (BX470248) BP0337; hypothetical protein complement(4961574..4962404) Bordetella bronchiseptica RB50 2659481 NP_891198.1 CDS BB4666 NC_002927.3 4962401 4963714 R ortholog of Bordetella pertussis (BX470248) BP0336; hypothetical protein complement(4962401..4963714) Bordetella bronchiseptica RB50 2659482 NP_891199.1 CDS BB4667 NC_002927.3 4963825 4964781 R ortholog of Bordetella pertussis (BX470248) BP0335; LysR family transcriptional regulator complement(4963825..4964781) Bordetella bronchiseptica RB50 2659539 NP_891200.1 CDS BB4668 NC_002927.3 4964886 4965881 D ortholog of Bordetella pertussis (BX470248) BP0334; hypothetical protein 4964886..4965881 Bordetella bronchiseptica RB50 2659495 NP_891201.1 CDS BB4669 NC_002927.3 4965894 4966778 D ortholog of Bordetella pertussis (BX470248) BP0333; metallo-beta-lactamase family protein 4965894..4966778 Bordetella bronchiseptica RB50 2659496 NP_891202.1 CDS BB4670 NC_002927.3 4966822 4967898 R hypothetical protein complement(4966822..4967898) Bordetella bronchiseptica RB50 2659596 NP_891203.1 CDS BB4671 NC_002927.3 4967907 4969103 R serine--glyoxylate aminotransferase complement(4967907..4969103) Bordetella bronchiseptica RB50 2659597 NP_891204.1 CDS BB4672 NC_002927.3 4969302 4970012 D GntR family transcriptional regulator 4969302..4970012 Bordetella bronchiseptica RB50 2660684 NP_891205.1 CDS BB4673 NC_002927.3 4970045 4970590 R hypothetical protein complement(4970045..4970590) Bordetella bronchiseptica RB50 2660685 NP_891206.1 CDS ctaD NC_002927.3 4970618 4972213 R cytochrome c oxidase polypeptide I complement(4970618..4972213) Bordetella bronchiseptica RB50 2660445 NP_891207.1 CDS BB4675 NC_002927.3 4972578 4973546 D lipoprotein 4972578..4973546 Bordetella bronchiseptica RB50 2660837 NP_891208.1 CDS BB4676 NC_002927.3 4973562 4974506 R LysR family transcriptional regulator complement(4973562..4974506) Bordetella bronchiseptica RB50 2660838 NP_891209.1 CDS BB4677 NC_002927.3 4974735 4975442 D haloacid dehalogenase-like hydrolase 4974735..4975442 Bordetella bronchiseptica RB50 2660911 NP_891210.1 CDS BB4678 NC_002927.3 4975445 4976653 D CaiB/BaiF family protein 4975445..4976653 Bordetella bronchiseptica RB50 2660912 NP_891211.1 CDS BB4679 NC_002927.3 4976666 4977121 D hypothetical protein 4976666..4977121 Bordetella bronchiseptica RB50 2661136 NP_891212.1 CDS BB4680 NC_002927.3 4977132 4978106 R hypothetical protein complement(4977132..4978106) Bordetella bronchiseptica RB50 2661137 NP_891213.1 CDS BB4681 NC_002927.3 4978146 4979894 R hypothetical protein complement(4978146..4979894) Bordetella bronchiseptica RB50 2661099 NP_891214.1 CDS BB4682 NC_002927.3 4979902 4980957 R hypothetical protein complement(4979902..4980957) Bordetella bronchiseptica RB50 2661100 NP_891215.1 CDS BB4683 NC_002927.3 4981069 4982064 D LysR family transcriptional regulator 4981069..4982064 Bordetella bronchiseptica RB50 2661101 NP_891216.1 CDS BB4684 NC_002927.3 4982155 4983225 R Similar to Alcaligenes eutrophus L-lactate dehydrogenase ldH SWALL:LDH_ALCEU (SWALL:Q07251) (349 aa) fasta scores: E(): 5.2e-24, 33.05% id in 354 aa, and to Rhizobium loti probable malate dehydrogenase mlr9216 SWALL:Q981V8 (EMBL:AP003015) (366 aa) fasta scores: E(): 3.6e-22, 29.78% id in 329 aa; malate/L-lactate dehydrogenase complement(4982155..4983225) Bordetella bronchiseptica RB50 2660368 NP_891217.1 CDS BB4685 NC_002927.3 4983286 4984026 D Similar to Deinococcus radiodurans transcriptional regulator, gntr family dr1905 SWALL:Q9RT60 (EMBL:AE002029) (245 aa) fasta scores: E(): 7.1e-16, 30.63% id in 222 aa, and to Ralstonia solanacearum probable transcriptional regulatory DNA-binding transcription regulator protein rsc1078 or rs04109 SWALL:Q8Y0G6 (EMBL:AL646062) (255 aa) fasta scores: E(): 1.5e-13, 32.9% id in 234 aa; GntR family transcriptional regulator 4983286..4984026 Bordetella bronchiseptica RB50 2661649 NP_891218.1 CDS BB4686 NC_002927.3 4984135 4984920 D Similar to Agrobacterium tumefaciens NAD/NADP dependent oxidoreductase atu0990 or agr_c_1817 SWALL:Q8UGP5 (EMBL:AE009064) (293 aa) fasta scores: E(): 1e-36, 47.17% id in 265 aa, and to Rhizobium meliloti oxidoreductase r00362 or smc01157 SWALL:Q92SK9 (EMBL:AL591783) (259 aa) fasta scores: E(): 1.7e-35, 47.14% id in 263 aa; short chain dehydrogenase 4984135..4984920 Bordetella bronchiseptica RB50 2661650 NP_891219.1 CDS BB4687 NC_002927.3 4984967 4986130 D Similar to Sulfolobus solfataricus mandelate racemase /muconate lactonizing enzyme related protein sso3124 SWALL:Q97U96 (EMBL:AE006902) (373 aa) fasta scores: E(): 1.1e-32, 35.71% id in 336 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2215 pa2215 SWALL:Q9I1Q2 (EMBL:AE004648) (391 aa) fasta scores: E(): 4.7e-31, 33.72% id in 344 aa; mandelate racemase 4984967..4986130 Bordetella bronchiseptica RB50 2662170 NP_891220.1 CDS BB4688 NC_002927.3 4986127 4986495 D Similar to Streptomyces coelicolor sc8d9.09 protein sco5497 or sc8d9.09 SWALL:Q9Z582 (EMBL:AL035569) (164 aa) fasta scores: E(): 0.00041, 36.7% id in 79 aa, and to Pyrobaculum aerophilum hypothetical protein Pae2796 pae2796 SWALL:Q8ZUG4 (EMBL:AE009894) (110 aa) fasta scores: E(): 0.01, 32.46% id in 77 aa; hypothetical protein 4986127..4986495 Bordetella bronchiseptica RB50 2660351 NP_891221.1 CDS BB4689 NC_002927.3 4986561 4987538 D ortholog of Bordetella pertussis (BX470248) BP0612; Similar to Rhizobium meliloti hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 3.5e-36, 36.08% id in 327 aa, and to Comamonas testosteroni OrfJ protein orfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.5e-34, 35.36% id in 328 aa; hypothetical protein 4986561..4987538 Bordetella bronchiseptica RB50 2660352 NP_891222.1 CDS BB4690 NC_002927.3 4987642 4988448 R ortholog of Bordetella pertussis (BX470248) BP0613; Similar to Ralstonia solanacearum probable transcription regulator protein rsc0300 or rs03267 SWALL:Q8Y2N5 (EMBL:AL646058) (290 aa) fasta scores: E(): 1.3e-34, 42.63% id in 258 aa, and to Ralstonia solanacearum probable transcription regulator protein rsp0704 or rs01745 SWALL:Q8XRX7 (EMBL:AL646080) (311 aa) fasta scores: E(): 1.2e-28, 38.11% id in 265 aa; transcriptional regulator complement(4987642..4988448) Bordetella bronchiseptica RB50 2658997 NP_891223.1 CDS BB4691 NC_002927.3 4988578 4990335 D ortholog of Bordetella pertussis (BX470248) BP0614; Similar to Pseudomonas aeruginosa hypothetical protein Pa2243 pa2243 SWALL:Q9I1M6 (EMBL:AE004650) (577 aa) fasta scores: E(): 4.1e-91, 47.71% id in 570 aa, and to Corynebacterium glutamicum succinate dehydrogenase/fumarate reductase, flavoprotein subunits cgl2633 SWALL:BAC00027 (EMBL:AP005282) (563 aa) fasta scores: E(): 5.1e-77, 40.9% id in 555 aa; hypothetical protein 4988578..4990335 Bordetella bronchiseptica RB50 2658998 NP_891224.1 CDS BB4692 NC_002927.3 4990411 4991370 D ortholog of Bordetella pertussis (BX470248) BP0615; Similar to Xanthomonas axonopodis hypothetical protein Xac2278 xac2278 SWALL:AAM37131 (EMBL:AE011865) (315 aa) fasta scores: E(): 9.8e-35, 36.84% id in 323 aa, and to Comamonas testosteroni Orf4 protein orf4 SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 4.2e-32, 38.78% id in 312 aa; hypothetical protein 4990411..4991370 Bordetella bronchiseptica RB50 2661960 NP_891225.1 CDS BB4693 NC_002927.3 4991424 4992269 D ortholog of Bordetella pertussis (BX470248) BP0616; Similar to Mycobacterium tuberculosis hypothetical protein rv3510c rv3510c or mtv023.17 or mt3614 SWALL:O53555 (EMBL:AL022022) (278 aa) fasta scores: E(): 7.6e-15, 27.69% id in 278 aa, and to Mycobacterium tuberculosis hypothetical protein rv2303c rv2303c or mtcy339.06 or mt2360 SWALL:Q50662 (EMBL:Z77163) (307 aa) fasta scores: E(): 1.1e-13, 27.14% id in 291 aa; hypothetical protein 4991424..4992269 Bordetella bronchiseptica RB50 2661961 NP_891226.1 CDS BB4694 NC_002927.3 4992321 4992974 R ortholog of Bordetella pertussis (BX470248) BP0617; Similar to Caulobacter crescentus transcriptional regulator, tetr family cc0992 SWALL:Q9A9I8 (EMBL:AE005777) (210 aa) fasta scores: E(): 2e-13, 34.07% id in 179 aa, and to Rhodococcus sp. NCIMB 9784 transcriptional repressor campR SWALL:Q93TU7 (EMBL:AF323755) (206 aa) fasta scores: E(): 3.3e-11, 25% id in 184 aa; TetR family transcriptional regulator complement(4992321..4992974) Bordetella bronchiseptica RB50 2659674 NP_891227.1 CDS lpdA NC_002927.3 4993017 4994426 R ortholog of Bordetella pertussis (BX470248) BP0618; Similar to Escherichia coli, and Escherichia coli O157:H7 dihydrolipoamide dehydrogenase lpda or lpd or b0116 or z0126 or ecs0120 SWALL:DLDH_ECOLI (SWALL:P00391) (473 aa) fasta scores: E(): 1.4e-93, 56% id in 466 aa, and to Salmonella typhimurium lipoamide dehydrogenase lpda or stm0154 SWALL:Q8ZRT0 (EMBL:AE008701) (474 aa) fasta scores: E(): 1.9e-93, 55.46% id in 467 aa; dihydrolipoamide dehydrogenase complement(4993017..4994426) Bordetella bronchiseptica RB50 2659675 NP_891228.1 CDS BB4696 NC_002927.3 4994443 4995183 R ortholog of Bordetella pertussis (BX470248) BP0619; Similar to Thermotoga maritima branched chain amino acid ABC transporter ATP-binding protein tm1139 SWALL:Q9X0M3 (EMBL:AE001771) (239 aa) fasta scores: E(): 8.4e-29, 46.61% id in 236 aa, and to Anabaena sp. ATP-binding protein of branched-chain amino acid ABC transporter alr2541 SWALL:Q8YU20 (EMBL:AP003589) (264 aa) fasta scores: E(): 1.2e-28, 44.91% id in 236 aa; branched-chain amino acid ABC transporter ATP-binding protein complement(4994443..4995183) Bordetella bronchiseptica RB50 2660090 NP_891229.1 CDS BB4697 NC_002927.3 4995176 4996990 R ortholog of Bordetella pertussis (BX470248) BP0620; Similar to Deinococcus radiodurans branched-chain amino acid ABC tranpsorter, ATP binding protein dra0261 SWALL:Q9RYP8 (EMBL:AE001863) (587 aa) fasta scores: E(): 1.1e-43, 33.85% id in 576 aa, and to Agrobacterium tumefaciens ABC transporter nucleotide binding/ATPase atu1411 or agr_c_2606 SWALL:Q8UFI6 (EMBL:AE009101) (595 aa) fasta scores: E(): 3e-43, 33.67% id in 579 aa; branched-chain amino acid ABC transporter permease complement(4995176..4996990) Bordetella bronchiseptica RB50 2659044 NP_891230.1 CDS BB4698 NC_002927.3 4996996 4997880 R ortholog of Bordetella pertussis (BX470248) BP0621; Similar to Escherichia coli, and Escherichia coli O157:H7 high-affinity branched-chain amino acid transport system permease livh livh or b3457 or z4827 or ecs4304 SWALL:LIVH_ECOLI (SWALL:P08340) (308 aa) fasta scores: E(): 4.9e-23, 33.55% id in 304 aa, and to Streptococcus pneumoniae R6 ABC transporter membrane-spanning permease-branched chain amino acid transport livH SWALL:AAK99464 (EMBL:AE008443) (292 aa) fasta scores: E(): 1.1e-24, 30.87% id in 298 aa; branched-chain amino acid ABC transporter permease complement(4996996..4997880) Bordetella bronchiseptica RB50 2660389 NP_891231.1 CDS BB4699 NC_002927.3 4997950 4999158 R ortholog of Bordetella pertussis (BX470248) BP0622; Similar to Escherichia coli leu/ile/val-binding protein precursor livj or b3460 SWALL:LIVJ_ECOLI (SWALL:P02917) (367 aa) fasta scores: E(): 9.2e-13, 28.42% id in 299 aa, and to Rhizobium meliloti probable leu/ile/val-binding protein livj or r00923 or smc00078 SWALL:Q92RF4 (EMBL:AL591785) (368 aa) fasta scores: E(): 1.5e-14, 32.86% id in 353 aa; leu/Ile/val-binding protein precursor complement(4997950..4999158) Bordetella bronchiseptica RB50 2663696 NP_891232.1 CDS BB4700 NC_002927.3 4999233 5000630 R ortholog of Bordetella pertussis (BX470248) BP0623; Similar to Pseudomonas aeruginosa hypothetical protein Pa0881 pa0881 SWALL:Q9I564 (EMBL:AE004522) (450 aa) fasta scores: E(): 1.2e-16, 26.83% id in 436 aa, and to Methanobacterium thermoautotrophicum conserved protein mth965 SWALL:O27046 (EMBL:AE000870) (452 aa) fasta scores: E(): 9.7e-16, 30.93% id in 375 aa; hypothetical protein complement(4999233..5000630) Bordetella bronchiseptica RB50 2663848 NP_891233.1 CDS BB4701 NC_002927.3 5000651 5002144 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(5000651..5002144) Bordetella bronchiseptica RB50 2663849 NP_891234.1 CDS BB4702 NC_002927.3 5002224 5003399 R ortholog of Bordetella pertussis (BX470248) BP0625; Similar to Archaeoglobus fulgidus acyl-coa dehydrogenase af0964 SWALL:O29298 (EMBL:AE001038) (394 aa) fasta scores: E(): 1e-65, 45.31% id in 395 aa, and to Caulobacter crescentus acyl-coa dehydrogenase family protein cc2328 SWALL:Q9A5W9 (EMBL:AE005903) (387 aa) fasta scores: E(): 2.4e-56, 41.64% id in 389 aa; acyl-CoA dehydrogenase complement(5002224..5003399) Bordetella bronchiseptica RB50 2663911 NP_891235.1 CDS BB4703 NC_002927.3 5003405 5004655 R ortholog of Bordetella pertussis (BX470248) BP0626; Similar to Caulobacter crescentus 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase cc0340 SWALL:Q9AB91 (EMBL:AE005707) (402 aa) fasta scores: E(): 1.2e-29, 37.04% id in 413 aa, and to Pseudomonas aeruginosa dihydrolipoamide succinyltransferase SucB or pa1586 SWALL:Q9I3D2 (EMBL:AE004586) (409 aa) fasta scores: E(): 3.9e-29, 37.16% id in 409 aa; 2-oxo acid dehydrogenase acyltransferase complement(5003405..5004655) Bordetella bronchiseptica RB50 2659372 NP_891236.1 CDS BB4704 NC_002927.3 5004659 5005444 R ortholog of Bordetella pertussis (BX470248) BP0627; Similar to Clostridium acetobutylicum 3-hydroxybutyryl-CoA dehydratase Crt or cac2712 SWALL:CRT_CLOAB (SWALL:P52046) (261 aa) fasta scores: E(): 1.8e-32, 39.76% id in 254 aa, and to Thermoanaerobacter tengcongensis enoyl-CoA hydratase/carnithine racemase CaiD or tte0544 SWALL:Q8RC92 (EMBL:AE013024) (260 aa) fasta scores: E(): 3.2e-35, 41.76% id in 261 aa; enoyl-CoA hydratase complement(5004659..5005444) Bordetella bronchiseptica RB50 2661322 NP_891237.1 CDS BB4704A NC_002927.3 5005459 5006433 R ortholog of Bordetella pertussis (BX470248) BP0628; Similar to Zea mays pyruvate dehydrogenase E1 beta subunit isoform 2 SWALL:Q9ZQY2 (EMBL:AF069909) (374 aa) fasta scores: E(): 1e-55, 46.76% id in 325 aa, and to Rhizobium loti acetoin dehydrogenase mll3628 SWALL:Q98FT4 (EMBL:AP003002) (332 aa) fasta scores: E(): 5.6e-59, 51.4% id in 321 aa; pyruvate dehydrogenase E1 beta subunit complement(5005459..5006433) Bordetella bronchiseptica RB50 2661323 NP_891238.1 CDS pdhA NC_002927.3 5006435 5007406 R ortholog of Bordetella pertussis (BX470248) BP0629; Similar to Zymomonas mobilis pyruvate dehydrogenase E1 component, alpha subunit PdhA or PdhA alphA SWALL:ODPA_ZYMMO (SWALL:O66112) (354 aa) fasta scores: E(): 3.5e-41, 41.45% id in 316 aa, and to Pseudomonas aeruginosa probable dehydrogenase E1 component pa4150 SWALL:Q9HWN1 (EMBL:AE004831) (324 aa) fasta scores: E(): 6.1e-48, 45% id in 320 aa; pyruvate dehydrogenase E1 component subunit alpha complement(5006435..5007406) Bordetella bronchiseptica RB50 2661526 NP_891239.1 CDS BB4706 NC_002927.3 5007758 5008543 R ortholog of Bordetella pertussis (BX470248) BP0630; Similar to Pseudomonas aeruginosa probable transcriptional regulator pa1015 SWALL:Q9I4V8 (EMBL:AE004534) (266 aa) fasta scores: E(): 7e-31, 39.59% id in 245 aa, and to Pseudomonas abietaniphila DitR ditR SWALL:Q9X4X3 (EMBL:AF119621) (273 aa) fasta scores: E(): 3.8e-26, 35.8% id in 243 aa; transcriptional regulator complement(5007758..5008543) Bordetella bronchiseptica RB50 2661527 NP_891240.1 CDS BB4707 NC_002927.3 5008620 5009396 R ortholog of Bordetella pertussis (BX470248) BP0631; Similar to Rhodobacter capsulatus probable enoyl-CoA hydratase fadb1 SWALL:ECHH_RHOCA (SWALL:P24162) (257 aa) fasta scores: E(): 8.7e-10, 32.01% id in 253 aa, and to Agrobacterium tumefaciens enoyl-CoA hydratase atu3481 or agr_l_2700 SWALL:Q8UA93 (EMBL:AE009278) (280 aa) fasta scores: E(): 3.1e-11, 31.9% id in 210 aa; enoyl-CoA hydratase complement(5008620..5009396) Bordetella bronchiseptica RB50 2661522 NP_891241.1 CDS BB4708 NC_002927.3 5009393 5011525 R ortholog of Bordetella pertussis (BX470248) BP0632; Similar to Pseudomonas mendocina pimeloyl-CoA synthetase SWALL:Q9ZER2 (EMBL:AJ012480) (711 aa) fasta scores: E(): 2.5e-71, 36.86% id in 708 aa, and to Pseudomonas aeruginosa pimeloyl-CoA synthetase pa1017 SWALL:Q9I4V6 (EMBL:AE004534) (715 aa) fasta scores: E(): 5.8e-70, 35.95% id in 712 aa; pimeloyl-CoA synthetase complement(5009393..5011525) Bordetella bronchiseptica RB50 2661523 NP_891242.1 CDS BB4709 NC_002927.3 5011527 5012519 R ortholog of Bordetella pertussis (BX470248) BP0633; Similar to Comamonas testosteroni OrfJ protein orfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.7e-41, 42.94% id in 319 aa, and to Rhizobium meliloti hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 5.9e-41, 40.42% id in 329 aa; hypothetical protein complement(5011527..5012519) Bordetella bronchiseptica RB50 2659592 NP_891243.1 CDS BB4710 NC_002927.3 5012764 5013912 D ortholog of Bordetella pertussis (BX470248) BP0634; Similar to Bacillus subtilis acyl-coa dehydrogenase acda or acD SWALL:ACDA_BACSU (SWALL:P45867) (379 aa) fasta scores: E(): 2.5e-49, 41.11% id in 377 aa, and to Bacillus halodurans acyl-coa dehydrogenase acda or bh3798 SWALL:Q9K6D1 (EMBL:AP001520) (380 aa) fasta scores: E(): 2e-52, 41.53% id in 378 aa; acyl-CoA dehydrogenase 5012764..5013912 Bordetella bronchiseptica RB50 2659593 NP_891244.1 CDS BB4711 NC_002927.3 5013909 5014715 D ortholog of Bordetella pertussis (BX470248) BP0635; Similar to Escherichia coli probable enoyl-coa hydratase PaaG or b1394 SWALL:PAAG_ECOLI (SWALL:P77467) (262 aa) fasta scores: E(): 6.3e-25, 33.84% id in 260 aa, and to Rhizobium meliloti enoyl-coa hydratase paag or rb1553 or smb21633 SWALL:Q92TG7 (EMBL:AL603647) (263 aa) fasta scores: E(): 2.7e-28, 39.53% id in 258 aa; enoyl-CoA hydratase 5013909..5014715 Bordetella bronchiseptica RB50 2660672 NP_891245.1 CDS BB4712 NC_002927.3 5014712 5015866 D ortholog of Bordetella pertussis (BX470248) BP0636; Similar to Pseudomonas aeruginosa hypothetical protein Pa1016 pa1016 SWALL:Q9I4V7 (EMBL:AE004534) (383 aa) fasta scores: E(): 2.5e-46, 41.68% id in 379 aa, and to Rhodococcus sp. NCIMB 9784 non-specific lipid carrier-like protein campC SWALL:Q93TU4 (EMBL:AF323755) (408 aa) fasta scores: E(): 5.2e-36, 35.1% id in 376 aa; hypothetical protein 5014712..5015866 Bordetella bronchiseptica RB50 2660913 NP_891246.1 CDS BB4713 NC_002927.3 5015868 5016269 D ortholog of Bordetella pertussis (BX470248) BP0637; Similar to Thermoplasma volcanium hypothetical protein tv0134 tv0134 or tvg0142586 SWALL:Q97CG7 (EMBL:AP000991) (135 aa) fasta scores: E(): 1.4e-07, 36.52% id in 115 aa, and to Thermoplasma acidophilum hypothetical protein Ta1457 ta1457 SWALL:Q9HI85 (EMBL:AL445067) (135 aa) fasta scores: E(): 2.2e-07, 35.65% id in 115 aa; hypothetical protein 5015868..5016269 Bordetella bronchiseptica RB50 2660914 NP_891247.1 CDS BB4714 NC_002927.3 5016266 5016661 D ortholog of Bordetella pertussis (BX470248) BP0638; no significant database matches; hypothetical protein 5016266..5016661 Bordetella bronchiseptica RB50 2660774 NP_891248.1 CDS BB4715 NC_002927.3 5016658 5017050 D ortholog of Bordetella pertussis (BX470248) BP0639; Similar to Archaeoglobus fulgidus monoamine oxidase regulatory protein, af0198 SWALL:O30041 (EMBL:AE001092) (146 aa) fasta scores: E(): 1.1e-06, 44.44% id in 90 aa, and to Aeromonas hydrophila enoyl-coa hydrotase phaJ SWALL:Q8RT81 (EMBL:AF468057) (134 aa) fasta scores: E(): 2.9e-06, 32.75% id in 116 aa; hypothetical protein 5016658..5017050 Bordetella bronchiseptica RB50 2660775 NP_891249.1 CDS BB4716 NC_002927.3 5017061 5018221 D ortholog of Bordetella pertussis (BX470248) BP0640; Similar to Pseudomonas aeruginosa probable acyl-coa dehydrogenase pa2889 SWALL:Q9HZV8 (EMBL:AE004715) (386 aa) fasta scores: E(): 8.7e-87, 55.84% id in 385 aa, and to Caenorhabditis elegans probable isovaleryl-coa dehydrogenase c02d5.1 SWALL:IVD_CAEEL (SWALL:P34275) (408 aa) fasta scores: E(): 1.4e-71, 47.79% id in 385 aa; acyl-CoA dehydrogenase 5017061..5018221 Bordetella bronchiseptica RB50 2660673 NP_891250.1 CDS BB4717 NC_002927.3 5018259 5019236 D ortholog of Bordetella pertussis (BX470248) BP0641; Similar to Rhizobium meliloti hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 7.3e-41, 40.18% id in 321 aa, and to Comamonas testosteroni OrfJ protein orfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 2.1e-37, 37.34% id in 324 aa; hypothetical protein 5018259..5019236 Bordetella bronchiseptica RB50 2660917 NP_891251.1 CDS BB4718 NC_002927.3 5019244 5020392 D ortholog of Bordetella pertussis (BX470248) BP0642; Similar to Pseudomonas aeruginosa hypothetical protein Pa3592 pa3592 SWALL:Q9HY34 (EMBL:AE004779) (395 aa) fasta scores: E(): 2.6e-30, 35.56% id in 388 aa, and to Rhizobium loti hypothetical protein Mlr1614 mlr1614 SWALL:Q98K67 (EMBL:AP002997) (391 aa) fasta scores: E(): 3.8e-30, 34.61% id in 390 aa; hypothetical protein 5019244..5020392 Bordetella bronchiseptica RB50 2661843 NP_891252.1 CDS BB4719 NC_002927.3 5020389 5021279 R ortholog of Bordetella pertussis (BX470248) BP0643; Similar to Xanthomonas axonopodis transcriptional regulator nocr or xac2276 SWALL:AAM37129 (EMBL:AE011865) (305 aa) fasta scores: E(): 2.9e-30, 36.94% id in 295 aa, and to Escherichia coli O157:H7 positive regulator for lys lysr or z4157 or ecs3696 SWALL:Q8X6J2 (EMBL:AE005512) (311 aa) fasta scores: E(): 4.4e-27, 34.93% id in 292 aa; LysR family transcriptional regulator complement(5020389..5021279) Bordetella bronchiseptica RB50 2661844 NP_891253.1 CDS BB4720 NC_002927.3 5021486 5022433 D ortholog of Bordetella pertussis (BX470248) BP0644; Similar to Agrobacterium tumefaciens dihydrodipicolinate synthase dapa or atu5457 or agr_pat_671 SWALL:Q8UJL9 (EMBL:AE008967) (302 aa) fasta scores: E(): 9.2e-20, 32.05% id in 287 aa, and to Thermotoga maritima dihydrodipicolinate synthase dapa or tm1521 SWALL:DAPA_THEMA (SWALL:Q9X1K9) (294 aa) fasta scores: E(): 6.4e-16, 28.8% id in 250 aa; dihydrodipicolinate synthase 5021486..5022433 Bordetella bronchiseptica RB50 2661875 NP_891254.1 CDS BB4721 NC_002927.3 5022444 5023127 R Similar to Streptomyces coelicolor transcriptional regulator sco6565 or sc4b5.15 SWALL:Q9ZBV3 (EMBL:AL034443) (225 aa) fasta scores: E(): 7.1e-12, 33% id in 203 aa, and to Thermoanaerobacter tengcongensis transcriptional regulator gntr or tte2558 SWALL:Q8R766 (EMBL:AE013196) (225 aa) fasta scores: E(): 8.2e-12, 27.8% id in 205 aa; GntR family transcriptional regulator complement(5022444..5023127) Bordetella bronchiseptica RB50 2661861 NP_891255.1 CDS aatA NC_002927.3 5023342 5024571 D Similar to Rhizobium meliloti aspartate aminotransferase a aata or r02325 or smc01578 SWALL:AATA_RHIME (SWALL:Q02635) (400 aa) fasta scores: E(): 4.6e-75, 51.64% id in 395 aa, and to Agrobacterium tumefaciens aspartate aminotransferase a aata or atu2196 or agr_c_3991 SWALL:Q8UDD1 (EMBL:AE009170) (400 aa) fasta scores: E(): 1.7e-75, 51.64% id in 395 aa; aspartate aminotransferase A 5023342..5024571 Bordetella bronchiseptica RB50 2661862 NP_891256.1 CDS BB4723 NC_002927.3 5024568 5025293 D Similar to Bordetella pertussis hypothetical 59.5 kDa protein SWALL:O30443 (EMBL:AF006000) (568 aa) fasta scores: E(): 7.3e-32, 46.22% id in 225 aa, and to Bacillus subtilis hypothetical protein YcsJ ycsJ SWALL:YCSJ_BACSU (SWALL:P42967) (578 aa) fasta scores: E(): 3.5e-27, 38.42% id in 229 aa; hypothetical protein 5024568..5025293 Bordetella bronchiseptica RB50 2661858 NP_891257.1 CDS BB4724 NC_002927.3 5025290 5026291 D Similar to Bacillus halodurans hypothetical protein Bh1818 bh1818 SWALL:Q9KBV6 (EMBL:AP001513) (331 aa) fasta scores: E(): 2.3e-44, 44.34% id in 318 aa, and to Ralstonia solanacearum hypothetical protein rsc2170 rsc2170 or rs01429 SWALL:Q8XXE4 (EMBL:AL646068) (353 aa) fasta scores: E(): 1.1e-31, 39.51% id in 329 aa; hypothetical protein 5025290..5026291 Bordetella bronchiseptica RB50 2661859 NP_891258.1 CDS BB4725 NC_002927.3 5026330 5027082 D Similar to Bordetella pertussis hypothetical 26.3 kDa protein SWALL:O30444 (EMBL:AF006000) (252 aa) fasta scores: E(): 2.8e-54, 62.09% id in 248 aa, and to Staphylococcus aureus hypothetical protein sav1605 sav1605 or sa1433 SWALL:Q99TP4 (EMBL:AP003362) (250 aa) fasta scores: E(): 2.3e-42, 48.38% id in 248 aa; hypothetical protein 5026330..5027082 Bordetella bronchiseptica RB50 2661860 NP_891259.1 CDS BB4726 NC_002927.3 5027147 5028754 D Similar to Rhizobium meliloti probable extracellular substrate-binding protein, family 5 ra1133 or sma2075 SWALL:Q92XV7 (EMBL:AE007299) (543 aa) fasta scores: E(): 3.5e-61, 36.39% id in 544 aa, and to Agrobacterium tumefaciens ABC transporter substrate-binding protein atu3433 or agr_l_2786 SWALL:Q8UAE1 (EMBL:AE009273) (585 aa) fasta scores: E(): 1.5e-65, 36.86% id in 529 aa; peptide ABC transporter substrate-binding protein 5027147..5028754 Bordetella bronchiseptica RB50 2661855 NP_891260.1 CDS BB4727 NC_002927.3 5028819 5029805 D Similar to Rhizobium meliloti probable ABC transporter permease ra1138 or sma2085 SWALL:Q92XV2 (EMBL:AE007299) (328 aa) fasta scores: E(): 2.2e-54, 47.93% id in 315 aa, and to Agrobacterium tumefaciens ABC transporter membrane spanning protein atu3434 or agr_l_2785 SWALL:Q8UAE0 (EMBL:AE009274) (347 aa) fasta scores: E(): 9.4e-54, 47.96% id in 319 aa; inner membrane component of binding-protein-dependent transport system 5028819..5029805 Bordetella bronchiseptica RB50 2661856 NP_891261.1 CDS BB4728 NC_002927.3 5029809 5030648 D Similar to Rhizobium loti ABC transporter permease mlr3399 SWALL:Q98GB9 (EMBL:AP003001) (276 aa) fasta scores: E(): 1.4e-42, 45.8% id in 262 aa, and to Brucella melitensis oligopeptide transport system permease oppc bmeii0506 SWALL:Q8YCM2 (EMBL:AE009686) (276 aa) fasta scores: E(): 4.9e-42, 45.31% id in 267 aa; inner membrane component of binding-protein-dependent transport system 5029809..5030648 Bordetella bronchiseptica RB50 2661853 NP_891262.1 CDS BB4729 NC_002927.3 5030653 5032344 D Similar to Agrobacterium tumefaciens ABC transporter nucleotide binding/ATPase atu3053 or agr_l_3504 SWALL:Q8UBG3 (EMBL:AE009236) (575 aa) fasta scores: E(): 1.8e-114, 61.32% id in 543 aa, and to Rhizobium meliloti oligopeptide ABC transporter ATP-binding protein rb0111 or smb20111 SWALL:Q92X51 (EMBL:AL603642) (546 aa) fasta scores: E(): 2e-83, 49.17% id in 543 aa; ABC transporter ATP-binding protein 5030653..5032344 Bordetella bronchiseptica RB50 2661850 NP_891263.1 CDS BB4730 NC_002927.3 5032338 5033660 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 5032338..5033660 Bordetella bronchiseptica RB50 2661869 NP_891264.1 CDS BB4731 NC_002927.3 5033645 5034634 D Similar to Pyrococcus abyssi phosphoglycerate dehydrogenase SerA-like or pab0514 SWALL:Q9V0M8 (EMBL:AJ248285) (307 aa) fasta scores: E(): 1e-35, 41.77% id in 304 aa, and to Pyrococcus furiosus phosphoglycerate dehydrogenase pf1394 SWALL:Q8U135 (EMBL:AE010242) (306 aa) fasta scores: E(): 2.4e-35, 42.05% id in 302 aa; phosphoglycerate dehydrogenase 5033645..5034634 Bordetella bronchiseptica RB50 2661870 NP_891265.1 CDS hutG NC_002927.3 5034637 5035440 D Similar to Pseudomonas putida N-formylglutamate amidohydrolase hutG SWALL:O31201 (EMBL:AF032970) (267 aa) fasta scores: E(): 8e-45, 47.67% id in 258 aa, and to Pseudomonas aeruginosa N-formylglutamate amidohydrolase hutg or pa5091 SWALL:Q9HU92 (EMBL:AE004922) (266 aa) fasta scores: E(): 1.6e-44, 50.19% id in 259 aa; N-formylglutamate amidohydrolase 5034637..5035440 Bordetella bronchiseptica RB50 2661852 NP_891266.1 CDS BB4733 NC_002927.3 5035454 5035855 D Similar to Pseudomonas aeruginosa biotin carboxyl carrier protein of acetyl-coa carboxylase accb or fabe or pa4847 SWALL:BCCP_PSEAE (SWALL:P37799) (156 aa) fasta scores: E(): 0.026, 27.74% id in 155 aa, and to Ralstonia solanacearum probable biotin carboxyl carrier protein of acetyl-coa carboxylase accb1 or rsc2786 or rs00061 SWALL:Q8XVP4 (EMBL:AL646071) (155 aa) fasta scores: E(): 0.025, 32.68% id in 153 aa; biotin carboxyl carrier protein of acetyl-CoA carboxylase 5035454..5035855 Bordetella bronchiseptica RB50 2661863 NP_891267.1 CDS accB NC_002927.3 5035852 5036298 D Similar to Bacillus subtilis biotin carboxyl carrier protein of acetyl-coa carboxylase accb or fabE SWALL:BCCP_BACSU (SWALL:P49786) (159 aa) fasta scores: E(): 5.7e-08, 36.29% id in 124 aa, and to Yersinia pestis biotin carboxyl carrier protein of acetyl-coa carboxylase accb or ypo3659 SWALL:Q8ZAX2 (EMBL:AJ414158) (154 aa) fasta scores: E(): 5.5e-08, 34.43% id in 151 aa; biotin carboxyl carrier protein of acetyl-CoA carboxylase 5035852..5036298 Bordetella bronchiseptica RB50 2661864 NP_891268.1 CDS accC NC_002927.3 5036288 5037652 D Similar to Escherichia coli biotin carboxylase accc or fabg or b3256 SWALL:ACCC_ECOLI (SWALL:P24182) (449 aa) fasta scores: E(): 1.4e-104, 61.67% id in 441 aa, and to Pseudomonas aeruginosa biotin carboxylase accc or fabg or pa4848 SWALL:ACCC_PSEAE (SWALL:P37798) (449 aa) fasta scores: E(): 1.5e-106, 62.13% id in 441 aa; biotin carboxylase 5036288..5037652 Bordetella bronchiseptica RB50 2661865 NP_891269.1 CDS BB4736 NC_002927.3 5037699 5038922 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 5037699..5038922 Bordetella bronchiseptica RB50 2661109 NP_891270.1 CDS BB4737 NC_002927.3 5038938 5039321 D Similar to Myxococcus xanthus DfrA protein dfrA SWALL:DFRA_MYXXA (SWALL:O52178) (131 aa) fasta scores: E(): 1.8e-10, 39.2% id in 125 aa, and to Xanthomonas campestris translation initiation inhibitor yjgf or xcc3239 SWALL:AAM42509 (EMBL:AE012441) (126 aa) fasta scores: E(): 3.3e-12, 45.96% id in 124 aa; endoribonuclease 5038938..5039321 Bordetella bronchiseptica RB50 2663951 NP_891271.1 CDS selD NC_002927.3 5039423 5040457 D catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 5039423..5040457 Bordetella bronchiseptica RB50 2663952 NP_891272.1 CDS BB4739 NC_002927.3 5040457 5041563 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 5040457..5041563 Bordetella bronchiseptica RB50 2659982 NP_891273.1 CDS BB4740 NC_002927.3 5041573 5041917 R Similar to Xanthomonas axonopodis hypothetical protein Xac0269 xac0269 SWALL:AAM35161 (EMBL:AE011652) (111 aa) fasta scores: E(): 5e-05, 40.19% id in 102 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0802 pa0802 SWALL:Q9I5D6 (EMBL:AE004515) (107 aa) fasta scores: E(): 0.018, 36.44% id in 107 aa; hypothetical protein complement(5041573..5041917) Bordetella bronchiseptica RB50 2660010 NP_891274.1 CDS BB4741 NC_002927.3 5041914 5043533 R Similar to Xanthomonas campestris hypothetical protein Xcc3596 xcc3596 SWALL:AAM42866 (EMBL:AE012480) (540 aa) fasta scores: E(): 1.1e-55, 38.67% id in 530 aa, and to Xanthomonas campestris hypothetical protein Xcc0251 xcc0251 SWALL:AAM39570 (EMBL:AE012121) (538 aa) fasta scores: E(): 8.8e-47, 41.62% id in 543 aa; iron-regulated membrane protein complement(5041914..5043533) Bordetella bronchiseptica RB50 2660011 NP_891275.1 CDS bupI NC_002927.3 5043804 5044337 D Pteviously sequenced as Bordetella bronchiseptica ECF sigma factor BupI SWALL:Q9L430 (EMBL:AJ251793) (177 aa) fasta scores: E(): 8.6e-67, 100% id in 177 aa; ECF sigma factor 5043804..5044337 Bordetella bronchiseptica RB50 2659090 NP_891276.1 CDS bupR NC_002927.3 5044339 5045373 D Previously sequenced as Bordetella bronchiseptica inner membrane sensor BupR SWALL:Q9L429 (EMBL:AJ251793) (344 aa) fasta scores: E(): 1.5e-131, 99.41% id in 344 aa; inner membrane sensor protein 5044339..5045373 Bordetella bronchiseptica RB50 2659091 NP_891277.1 CDS bfrZ NC_002927.3 5045456 5048038 D Previously sequenced as Bordetella bronchiseptica siderophore receptor precursor bfrZ SWALL:Q9L428 (EMBL:AJ251793) (860 aa) fasta scores: E(): 0, 100% id in 860 aa; siderophore receptor precursor 5045456..5048038 Bordetella bronchiseptica RB50 2659110 NP_891278.1 CDS BB4745 NC_002927.3 5048253 5048690 D Similar to Sphingomonas aromaticivorans hypothetical 14.5 kDa protein orf151 SWALL:O85848 (EMBL:AF079317) (137 aa) fasta scores: E(): 1.2e-16, 42.73% id in 117 aa, and to Caulobacter crescentus hypothetical protein Cc3645 cc3645 SWALL:Q9A2C0 (EMBL:AE006023) (187 aa) fasta scores: E(): 4.5e-08, 31.2% id in 141 aa; hypothetical protein 5048253..5048690 Bordetella bronchiseptica RB50 2660020 NP_891279.1 CDS BB4746 NC_002927.3 5048690 5049853 D Similar to Caulobacter crescentus hypothetical protein Cc1841 cc1841 SWALL:Q9A785 (EMBL:AE005858) (375 aa) fasta scores: E(): 5.7e-73, 56.19% id in 363 aa, and to Mycobacterium tuberculosis hypothetical 38.7 kDa protein mcr or rv1143 or mt1176 or mtci65.10 SWALL:O06543 (EMBL:Z95584) (395 aa) fasta scores: E(): 1e-67, 50.96% id in 363 aa; hypothetical protein 5048690..5049853 Bordetella bronchiseptica RB50 2660021 NP_891280.1 CDS BB4747 NC_002927.3 5049830 5050612 R Similar to Bacillus halodurans transcriptional regulator bh2137 SWALL:Q9KAZ9 (EMBL:AP001514) (251 aa) fasta scores: E(): 5.4e-17, 30.48% id in 246 aa, and to Streptomyces coelicolor iclr-family transcriptional regulatory protein sco4989 or 2sck36.12 SWALL:Q93JK5 (EMBL:AL591857) (254 aa) fasta scores: E(): 1.4e-12, 29.91% id in 244 aa; transcriptional regulator complement(5049830..5050612) Bordetella bronchiseptica RB50 2663949 NP_891281.1 CDS BB4748 NC_002927.3 5050736 5051752 D Similar to Xylella fastidiosa hypothetical protein Xf0451 xf0451 SWALL:Q9PG51 (EMBL:AE003895) (363 aa) fasta scores: E(): 3.4e-41, 41.69% id in 331 aa, and to Pseudomonas aeruginosa probable oxidoreductase pa1833 SWALL:Q9I2R2 (EMBL:AE004609) (330 aa) fasta scores: E(): 2.1e-39, 43.37% id in 302 aa; zinc-binding dehydrogenase 5050736..5051752 Bordetella bronchiseptica RB50 2663950 NP_891282.1 CDS BB4749 NC_002927.3 5051812 5052864 R Similar to Agrobacterium tumefaciens hypothetical protein atu4727 atu4727 or agr_l_312 SWALL:Q8U6S9 (EMBL:AE009401) (329 aa) fasta scores: E(): 1.4e-38, 39.27% id in 331 aa, and to Comamonas testosteroni Orf4 protein orf4 SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 2e-37, 39.25% id in 321 aa; hypothetical protein complement(5051812..5052864) Bordetella bronchiseptica RB50 2659078 NP_891283.1 CDS BB4750 NC_002927.3 5052923 5053690 R Similar to Rhodopseudomonas palustris 2-hydroxycyclohexanecarboxyl-coa dehyrogenase badH SWALL:O07457 (EMBL:U75363) (255 aa) fasta scores: E(): 5.2e-53, 58.82% id in 255 aa, and to Thauera aromatica alcohol dehydrogenase SWALL:Q9AJT2 (EMBL:AJ278289) (249 aa) fasta scores: E(): 4.6e-39, 49.8% id in 253 aa; short chain dehyrogenase complement(5052923..5053690) Bordetella bronchiseptica RB50 2658963 NP_891284.1 CDS BB4751 NC_002927.3 5053711 5054208 R Similar to Sulfolobus tokodaii hypothetical protein St0068 st0068 SWALL:Q976X1 (EMBL:AP000981) (165 aa) fasta scores: E(): 1.3e-10, 36.36% id in 154 aa, and to Sulfolobus solfataricus regulatory protein, sso3136 SWALL:Q97U86 (EMBL:AE006904) (161 aa) fasta scores: E(): 2.5e-09, 34.41% id in 154 aa; hypothetical protein complement(5053711..5054208) Bordetella bronchiseptica RB50 2658964 NP_891285.1 CDS BB4752 NC_002927.3 5054205 5055359 R Similar to Bacillus subtilis acyl-CoA dehydrogenase MmgC SWALL:ACDB_BACSU (SWALL:P45857) (379 aa) fasta scores: E(): 5e-56, 44.15% id in 385 aa, and to Mycobacterium leprae probable acyl-CoA dehydrogenase fadE25 or Acd or ml0737 or b1308_f1_34 SWALL:ACDP_MYCLE (SWALL:P46703) (389 aa) fasta scores: E(): 1.7e-54, 41.99% id in 381 aa; acyl-CoA dehydrogenase complement(5054205..5055359) Bordetella bronchiseptica RB50 2663940 NP_891286.1 CDS BB4753 NC_002927.3 5055335 5056597 R Similar to Ralstonia solanacearum transmembrane protein rsc0796 or rs05041 SWALL:Q8Y194 (EMBL:AL646061) (420 aa) fasta scores: E(): 6.4e-89, 56.54% id in 405 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0446 pa0446 SWALL:Q9I672 (EMBL:AE004482) (407 aa) fasta scores: E(): 1.9e-86, 53.07% id in 407 aa; hypothetical protein complement(5055335..5056597) Bordetella bronchiseptica RB50 2658969 NP_891287.1 CDS BB4754 NC_002927.3 5056764 5057738 R Similar to Variovorax paradoxus, and Burkholderia cepacia 2,4-diphenoxyacetic acid gene cluster SWALL:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 2.7e-39, 40.26% id in 303 aa, and to Pseudomonas putida, and Pseudomonas sp. hypothetical 34.5 kDa protein in clcb-clcd intergenic region precursor SWALL:YCLC_PSEPU (SWALL:Q47100) (329 aa) fasta scores: E(): 1.3e-36, 40.85% id in 306 aa; hypothetical protein complement(5056764..5057738) Bordetella bronchiseptica RB50 2658970 NP_891288.1 CDS BB4755 NC_002927.3 5057926 5058696 D Similar to Clostridium beijerinckii crotonase Crt SWALL:Q8RMI7 (EMBL:AF494018) (261 aa) fasta scores: E(): 3.3e-35, 43.56% id in 241 aa, and to Thermoanaerobacter tengcongensis enoyl-CoA hydratase/carnithine racemase caid or tte0544 SWALL:Q8RC92 (EMBL:AE013024) (260 aa) fasta scores: E(): 1.1e-37, 45.34% id in 247 aa; enoyl-CoA hydratase 5057926..5058696 Bordetella bronchiseptica RB50 2659026 NP_891289.1 CDS fadH NC_002927.3 5058743 5060761 D Similar to Escherichia coli 2,4-dienoyl-CoA reductase [NADPH] fadh or b3081 SWALL:FADH_ECOLI (SWALL:P42593) (671 aa) fasta scores: E(): 6.2e-116, 50.07% id in 671 aa, and to Streptomyces coelicolor 2,4-dienoyl-CoA reductase fadh or sco7066 or sc4g1.32 SWALL:Q9FC18 (EMBL:AL391039) (671 aa) fasta scores: E(): 4.4e-123, 52.37% id in 674 aa; 2,4-dienoyl-CoA reductase 5058743..5060761 Bordetella bronchiseptica RB50 2659027 NP_891290.1 CDS BB4757 NC_002927.3 5060824 5061633 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 5060824..5061633 Bordetella bronchiseptica RB50 2659094 NP_891291.1 CDS BB4758 NC_002927.3 5061721 5062170 D Similar to Rhodopseudomonas palustris transcriptional activatory protein BadR badR SWALL:BADR_RHOPA (SWALL:O07458) (175 aa) fasta scores: E(): 2.5e-20, 43.26% id in 141 aa, and to Escherichia coli homoprotocatechuate degradative operon repressor hpcr or hpaR SWALL:HPCR_ECOLI (SWALL:Q07095) (148 aa) fasta scores: E(): 1.9e-05, 29.63% id in 135 aa; MarR family transcriptional regulator 5061721..5062170 Bordetella bronchiseptica RB50 2659023 NP_891292.1 CDS etfB NC_002927.3 5062194 5062943 D Similar to Bradyrhizobium japonicum electron transfer flavoprotein beta-subunit etfb or etfS SWALL:ETFB_BRAJA (SWALL:P53575) (249 aa) fasta scores: E(): 4.9e-58, 68.27% id in 249 aa, and to Paracoccus denitrificans electron transfer flavoprotein beta-subunit etfB SWALL:ETFB_PARDE (SWALL:P38975) (252 aa) fasta scores: E(): 1.3e-54, 64.82% id in 253 aa; electron transfer flavoprotein subunit beta 5062194..5062943 Bordetella bronchiseptica RB50 2659024 NP_891293.1 CDS etfA NC_002927.3 5062940 5063872 D Similar to Bradyrhizobium japonicum electron transfer flavoprotein alpha-subunit etfa or etfL SWALL:ETFA_BRAJA (SWALL:P53573) (314 aa) fasta scores: E(): 8e-64, 68.38% id in 310 aa, and to Paracoccus denitrificans electron transfer flavoprotein alpha-subunit etfA SWALL:ETFA_PARDE (SWALL:P38974) (307 aa) fasta scores: E(): 5.4e-59, 65.14% id in 307 aa; electron transfer flavoprotein subunit alpha 5062940..5063872 Bordetella bronchiseptica RB50 2659032 NP_891294.1 CDS bfrA NC_002927.3 5064222 5066486 D Previously sequenced as Bordetella bronchiseptica exogenous ferric siderophore receptor BfrA SWALL:P70847 (EMBL:U56084) (754 aa) fasta scores: E(): 0, 100% id in 754 aa; exogenous ferric siderophore receptor 5064222..5066486 Bordetella bronchiseptica RB50 2659045 NP_891295.1 CDS BB4762 NC_002927.3 5066559 5067536 R Similar to Comamonas testosteroni OrfJ protein orfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.7e-37, 35.91% id in 323 aa, and to Bordetella pertussis hypothetical 34.9 kDa protein in brg1 3'region precursor SWALL:YBR5_BORPE (SWALL:O30446) (323 aa) fasta scores: E(): 2.2e-37, 39.31% id in 323 aa; hypothetical protein complement(5066559..5067536) Bordetella bronchiseptica RB50 2659046 NP_891296.1 CDS BB4763 NC_002927.3 5067578 5068063 R Similar to Archaeoglobus fulgidus maoc protein af2313 SWALL:O27971 (EMBL:AE000944) (151 aa) fasta scores: E(): 3.9e-12, 36.73% id in 147 aa, and to Sulfolobus tokodaii hypothetical protein St0068 st0068 SWALL:Q976X1 (EMBL:AP000981) (165 aa) fasta scores: E(): 1.2e-10, 32.9% id in 155 aa; hypothetical protein complement(5067578..5068063) Bordetella bronchiseptica RB50 2661174 NP_891297.1 CDS fabG NC_002927.3 5068267 5069013 D Similar to Bacillus subtilis 3-oxoacyl-ACP reductase fabG SWALL:FABG_BACSU (SWALL:P51831) (246 aa) fasta scores: E(): 9.3e-32, 44.53% id in 247 aa, and to Sulfolobus tokodaii 3-oxoacyl-ACP reductase st1109 SWALL:Q972M3 (EMBL:AP000985) (250 aa) fasta scores: E(): 3.6e-35, 46.18% id in 249 aa; 3-oxoacyl-ACP reductase 5068267..5069013 Bordetella bronchiseptica RB50 2661175 NP_891298.1 CDS BB4765 NC_002927.3 5069039 5070235 D Similar to Thermoplasma volcanium L-carnitine dehydratase tv1186 or tvg1215416 SWALL:Q979H5 (EMBL:AP000995) (399 aa) fasta scores: E(): 1e-56, 38.88% id in 396 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3592 pa3592 SWALL:Q9HY34 (EMBL:AE004779) (395 aa) fasta scores: E(): 1.2e-50, 36.64% id in 393 aa; hypothetical protein 5069039..5070235 Bordetella bronchiseptica RB50 2659089 NP_891299.1 CDS BB4766 NC_002927.3 5070268 5071521 D Similar to Methanosarcina mazei beta-ketoacyl synthase/thiolase mm0870 SWALL:AAM30566 (EMBL:AE013312) (390 aa) fasta scores: E(): 1.6e-31, 37.7% id in 419 aa, and to Methanosarcina acetivorans acetyl-coa c-acyltransferase ma4042 SWALL:Q8TIU9 (EMBL:AE011116) (390 aa) fasta scores: E(): 1.2e-30, 35.73% id in 403 aa; thiolase 5070268..5071521 Bordetella bronchiseptica RB50 2659139 NP_891300.1 CDS BB4767 NC_002927.3 5071554 5072417 D Similar to Pseudomonas aeruginosa (R)-specific enoyl-CoA hydratase PhaJ2 or pa1018 SWALL:Q9LBK1 (EMBL:AB040026) (288 aa) fasta scores: E(): 2.7e-50, 50.69% id in 286 aa, and to Mycobacterium tuberculosis maoc family protein rv3389c or mtv004.47c or mt3496 SWALL:Q11198 (EMBL:U27357) (290 aa) fasta scores: E(): 4.4e-34, 43.49% id in 292 aa; (R)-specific enoyl-CoA hydratase 5071554..5072417 Bordetella bronchiseptica RB50 2659112 NP_891301.1 CDS BB4768 NC_002927.3 5072446 5073591 D Similar to Mycobacterium tuberculosis fatty acid-CoA racemase far or rv0855 or mtv043.48 or mt0878 SWALL:O53867 (EMBL:AL022004) (359 aa) fasta scores: E(): 4.8e-55, 44.56% id in 359 aa, and to Streptomyces coelicolor racemase sco6730 or sc5f2a.13 SWALL:Q9X7N6 (EMBL:AL049587) (398 aa) fasta scores: E(): 1.6e-66, 50.27% id in 368 aa; racemase 5072446..5073591 Bordetella bronchiseptica RB50 2659113 NP_891302.1 CDS BB4769 NC_002927.3 5073647 5074516 D Similar to Brucella melitensis transcriptional regulator bmeii1022 SWALL:Q8YB78 (EMBL:AE009735) (284 aa) fasta scores: E(): 4.8e-34, 38.6% id in 272 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa1630 SWALL:Q9I392 (EMBL:AE004590) (288 aa) fasta scores: E(): 7.7e-34, 37.41% id in 286 aa; transcriptional regulator 5073647..5074516 Bordetella bronchiseptica RB50 2659137 NP_891303.1 CDS BB4770 NC_002927.3 5074585 5075634 D Similar to Rhodococcus globerulus biphenyl-2,3-diol 1,2-dioxygenase III BphC3 SWALL:BHC3_RHOGO (SWALL:P47233) (189 aa) fasta scores: E(): 6.1e-06, 36% id in 125 aa, and to Rhizobium meliloti hypothetical protein r00986 or smc00115 SWALL:Q92RA9 (EMBL:AL591785) (296 aa) fasta scores: E(): 3.7e-05, 24.46% id in 233 aa; dioxygenase 5074585..5075634 Bordetella bronchiseptica RB50 2659138 NP_891304.1 CDS mhpC NC_002927.3 5075631 5076521 D Similar to Escherichia coli 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase MhpC or b0349 SWALL:MHPC_ECOLI (SWALL:P77044) (293 aa) fasta scores: E(): 1.4e-17, 30.07% id in 276 aa, and to Rhodococcus sp. RHA1 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase BphD2 SWALL:Q9KWQ6 (EMBL:AB030672) (292 aa) fasta scores: E(): 2.8e-19, 36.6% id in 265 aa; 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase 5075631..5076521 Bordetella bronchiseptica RB50 2660321 NP_891305.1 CDS vanB NC_002927.3 5076594 5077565 R Similar to Pseudomonas sp. vanillate O-demethylase oxidoreductase VanB SWALL:VANB_PSESP (SWALL:O05617) (317 aa) fasta scores: E(): 5.7e-59, 53.07% id in 309 aa, and to Acinetobacter calcoaceticus vanillate O-demethylase oxidoreductase vanB SWALL:VANB_ACICA (SWALL:O24840) (318 aa) fasta scores: E(): 6.2e-45, 42.76% id in 311 aa; vanillate O-demethylase oxidoreductase complement(5076594..5077565) Bordetella bronchiseptica RB50 2659011 NP_891306.1 CDS BB4773 NC_002927.3 5077562 5078872 R Similar to Comamonas testosteroni 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit CbaA SWALL:CBAA_COMTE (SWALL:Q44256) (432 aa) fasta scores: E(): 1.1e-49, 38.67% id in 393 aa, and to Pseudomonas putida phthalate 4,5-dioxygenase oxygenase subunit Pht3 SWALL:PHT3_PSEPU (SWALL:Q05183) (439 aa) fasta scores: E(): 6.1e-39, 37.94% id in 398 aa; 3-chlorobenzoate-3,4-dioxygenase oxygenase complement(5077562..5078872) Bordetella bronchiseptica RB50 2662146 NP_891307.1 CDS BB4774 NC_002927.3 5078889 5080010 R Similar to Serratia marcescens iron(III)-binding periplasmic protein precursor SfuA SWALL:SFUA_SERMA (SWALL:P21408) (338 aa) fasta scores: E(): 0.044, 25.51% id in 243 aa, and to Anabaena sp. ferric iron-binding periplasmic protein of ABC transporter alr1382 SWALL:Q8YX36 (EMBL:AP003585) (336 aa) fasta scores: E(): 0.01, 21.8% id in 321 aa; iron ABC transporter substrate-binding protein complement(5078889..5080010) Bordetella bronchiseptica RB50 2662147 NP_891308.1 CDS BB4775 NC_002927.3 5080142 5081824 R Similar to Fusobacterium nucleatum iron(III)-transport system permease fn0309 SWALL:Q8RGI4 (EMBL:AE010543) (560 aa) fasta scores: E(): 2.1e-29, 24.59% id in 553 aa, and to Pasteurella multocida afub afub_2 or pm1455 SWALL:Q9CKZ5 (EMBL:AE006182) (564 aa) fasta scores: E(): 4.1e-33, 26.01% id in 569 aa; iron(III)-transport system permease complement(5080142..5081824) Bordetella bronchiseptica RB50 2659278 NP_891309.1 CDS BB4776 NC_002927.3 5081830 5082948 R Similar to Vibrio cholerae iron vc0610 SWALL:Q9KUB3 (EMBL:AE004146) (343 aa) fasta scores: E(): 5.2e-32, 36.61% id in 355 aa, and to Ralstonia solanacearum probable ATP-binding ABC transporter protein rsc2939 or rs00150 SWALL:Q8XV92 (EMBL:AL646072) (358 aa) fasta scores: E(): 7.1e-39, 41.64% id in 365 aa; iron(III)-transport ATP-binding protein complement(5081830..5082948) Bordetella bronchiseptica RB50 2662240 NP_891310.1 CDS BB4777 NC_002927.3 5082959 5084122 R Similar to Burkholderia cepacia phthalate dihydrodiol dehydrogenase OphB SWALL:Q9ZFQ6 (EMBL:AF095748) (391 aa) fasta scores: E(): 5.6e-59, 42.3% id in 390 aa, and to Pseudomonas putida 4,5,-dihydroxyphthalate dehydrogenase Pht4 SWALL:PHT4_PSEPU (SWALL:Q05184) (410 aa) fasta scores: E(): 1.6e-56, 43.14% id in 394 aa; dehydrogenase complement(5082959..5084122) Bordetella bronchiseptica RB50 2659726 NP_891311.1 CDS BB4778 NC_002927.3 5084151 5084648 R Similar to Arthrobacter keyseri oxalocitramalate aldolase pcmE SWALL:Q9AGL6 (EMBL:AF331043) (230 aa) fasta scores: E(): 5.9e-10, 34.41% id in 154 aa, and to Rhizobium meliloti hypothetical protein r01765 r01765 or smc00502 SWALL:Q92PI8 (EMBL:AL591788) (224 aa) fasta scores: E(): 7.7e-10, 39.49% id in 119 aa; hypothetical protein complement(5084151..5084648) Bordetella bronchiseptica RB50 2659033 NP_891312.1 CDS BB4779 NC_002927.3 5084645 5084836 R no significant database matches; hypothetical protein complement(5084645..5084836) Bordetella bronchiseptica RB50 2659374 NP_891313.1 CDS BB4780 NC_002927.3 5084870 5085655 R Similar to Agrobacterium tumefaciens NAD/NADP dependent oxidoreductase atu0990 or agr_c_1817 SWALL:Q8UGP5 (EMBL:AE009064) (293 aa) fasta scores: E(): 4.8e-36, 49.02% id in 257 aa, and to Rhizobium meliloti oxidoreductase r00362 or smc01157 SWALL:Q92SK9 (EMBL:AL591783) (259 aa) fasta scores: E(): 4.4e-34, 45.91% id in 257 aa; short chain dehydrogenase complement(5084870..5085655) Bordetella bronchiseptica RB50 2659375 NP_891314.1 CDS BB4781 NC_002927.3 5085666 5086484 R catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis; L-aspartate dehydrogenase complement(5085666..5086484) Bordetella bronchiseptica RB50 2659376 NP_891315.1 CDS BB4782 NC_002927.3 5086650 5087615 D Similar to Escherichia coli, and Escherichia coli O157:H7 glycine cleavage system transcriptional activator gcva or b2808 or z4125 or ecs3668 SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 8.6e-20, 35.83% id in 307 aa, and to Salmonella typhimurium, and Salmonella typhi regulator of gcv operon gcva or stm2982 or sty3122 SWALL:Q8XEJ8 (EMBL:AE008836) (305 aa) fasta scores: E(): 4.9e-19, 35.17% id in 307 aa; LysR family transcriptional regulator 5086650..5087615 Bordetella bronchiseptica RB50 2659761 NP_891316.1 CDS BB4783 NC_002927.3 5087643 5088050 R ortholog of Bordetella pertussis (BX470248) BP0647; Similar to Pyrococcus abyssi hypothetical protein Pab1062 pab1062 SWALL:Q9UY93 (EMBL:AJ248288) (130 aa) fasta scores: E(): 4.2e-09, 30.32% id in 122 aa, and to Pyrococcus horikoshii hypothetical 14.0 kDa protein Ph0353 ph0353 SWALL:Y353_PYRHO (SWALL:O58091) (134 aa) fasta scores: E(): 2.2e-08, 31.4% id in 121 aa; hypothetical protein complement(5087643..5088050) Bordetella bronchiseptica RB50 2660226 NP_891317.1 CDS BB4784 NC_002927.3 5088047 5089321 R ortholog of Bordetella pertussis (BX470248) BP0648; Similar to Rhizobium loti hypothetical protein Mll1737 mll1737 SWALL:Q98JX4 (EMBL:AP002998) (416 aa) fasta scores: E(): 6.6e-31, 29.69% id in 421 aa, and to Methanococcus jannaschii hypothetical protein Mj1313 mj1313 SWALL:Q58709 (EMBL:U67571) (403 aa) fasta scores: E(): 2e-30, 27.94% id in 390 aa; hypothetical protein complement(5088047..5089321) Bordetella bronchiseptica RB50 2663927 NP_891318.1 CDS BB4785 NC_002927.3 5089339 5090310 R ortholog of Bordetella pertussis (BX470248) BP0649; Similar to Rhizobium meliloti hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.2e-43, 43.16% id in 322 aa, and to Agrobacterium tumefaciens hypothetical protein atu4727 atu4727 or agr_l_312 SWALL:Q8U6S9 (EMBL:AE009401) (329 aa) fasta scores: E(): 8.3e-43, 41.66% id in 324 aa; hypothetical protein complement(5089339..5090310) Bordetella bronchiseptica RB50 2663928 NP_891319.1 CDS BB4786 NC_002927.3 5090417 5091379 D ortholog of Bordetella pertussis (BX470248) BP0650; Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2206 SWALL:Q9I1R1 (EMBL:AE004647) (315 aa) fasta scores: E(): 9.7e-28, 32.46% id in 308 aa, and to Xanthomonas campestris galactose-binding protein regulator gbpr or xcc1748 SWALL:AAM41039 (EMBL:AE012276) (323 aa) fasta scores: E(): 2.3e-25, 31.84% id in 314 aa; LysR family transcriptional regulator 5090417..5091379 Bordetella bronchiseptica RB50 2663929 NP_891320.1 CDS dld NC_002927.3 5091498 5093219 D component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 5091498..5093219 Bordetella bronchiseptica RB50 2660000 NP_891321.1 CDS BB4788 NC_002927.3 5093263 5094393 R ortholog of Bordetella pertussis (BX470248) BP0652; Similar to Ralstonia solanacearum acyl-coa dehydrogenase oxidoreductase rsc2044 or rs03609 SWALL:Q8XXR9 (EMBL:AL646068) (376 aa) fasta scores: E(): 1.2e-50, 47.07% id in 376 aa, and to Caulobacter crescentus acyl-coa dehydrogenase family protein cc1311 SWALL:Q9A8P2 (EMBL:AE005806) (401 aa) fasta scores: E(): 9.5e-46, 40.47% id in 378 aa; acyl-CoA dehydrogenase complement(5093263..5094393) Bordetella bronchiseptica RB50 2660019 NP_891322.1 CDS BB4789 NC_002927.3 5094407 5095597 R ortholog of Bordetella pertussis (BX470248) BP0653; Similar to Ralstonia solanacearum acyl-coa dehydrogenase oxidoreductase rsc2045 or rs03610 SWALL:Q8XXR8 (EMBL:AL646068) (398 aa) fasta scores: E(): 9.8e-96, 58.14% id in 399 aa, and to Caulobacter crescentus acyl-coa dehydrogenase family protein cc1310 SWALL:Q9A8P3 (EMBL:AE005806) (404 aa) fasta scores: E(): 2.4e-81, 50.49% id in 404 aa; acyl-CoA dehydrogenase complement(5094407..5095597) Bordetella bronchiseptica RB50 2659067 NP_891323.1 CDS BB4790 NC_002927.3 5095778 5096797 R ortholog of Bordetella pertussis (BX470248) BP0654; Similar to Comamonas testosteroni OrfJ protein orfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 4.1e-37, 37.42% id in 326 aa, and to Rhizobium meliloti hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.2e-34, 36.01% id in 311 aa; hypothetical protein complement(5095778..5096797) Bordetella bronchiseptica RB50 2659068 NP_891324.1 CDS BB4791 NC_002927.3 5096930 5098102 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase complement(5096930..5098102) Bordetella bronchiseptica RB50 2662059 NP_891325.1 CDS BB4792 NC_002927.3 5098095 5098769 R ortholog of Bordetella pertussis (BX470248) BP0656; Similar to Pseudomonas aeruginosa hypothetical protein Pa5391 pa5391 SWALL:Q9HTH3 (EMBL:AE004951) (224 aa) fasta scores: E(): 4.7e-54, 68.3% id in 224 aa, and to Aeropyrum pernix hypothetical protein Ape1388 ape1388 SWALL:Q9YC63 (EMBL:AP000061) (301 aa) fasta scores: E(): 3.6e-18, 42.77% id in 166 aa; hypothetical protein complement(5098095..5098769) Bordetella bronchiseptica RB50 2662167 NP_891326.1 CDS BB4793 NC_002927.3 5098780 5099217 R ortholog of Bordetella pertussis (BX470248) BP0657; Similar to Pseudomonas aeruginosa hypothetical protein Pa5392 pa5392 SWALL:Q9HTH2 (EMBL:AE004951) (140 aa) fasta scores: E(): 7.3e-50, 93.52% id in 139 aa, and to Corynebacterium glutamicum translation initiation inhibitor cgl0152 SWALL:BAB97545 (EMBL:AP005274) (135 aa) fasta scores: E(): 1.2e-09, 40.36% id in 109 aa; endoribonuclease complement(5098780..5099217) Bordetella bronchiseptica RB50 2662168 NP_891327.1 CDS BB4794 NC_002927.3 5099239 5100513 R ortholog of Bordetella pertussis (BX470248) BP0658; Similar to Pseudomonas aeruginosa hypothetical protein Pa5393 pa5393 SWALL:Q9HTH1 (EMBL:AE004951) (450 aa) fasta scores: E(): 3.4e-128, 75.96% id in 416 aa, and to Synechocystis sp. hypothetical protein Slr0801 slr0801 SWALL:Q55951 (EMBL:D64005) (416 aa) fasta scores: E(): 6.2e-54, 40.59% id in 404 aa; hypothetical protein complement(5099239..5100513) Bordetella bronchiseptica RB50 2662227 NP_891328.1 CDS BB4795 NC_002927.3 5100878 5101861 D ortholog of Bordetella pertussis (BX470248) BP0659; Similar to Ralstonia solanacearum oxidoreductase rsc2891 or rs00208 SWALL:Q8XVE0 (EMBL:AL646072) (338 aa) fasta scores: E(): 3e-76, 66.56% id in 332 aa, and to Rhizobium loti dehydrogenase, zinc-binding alcohol dehydrogenase, NADPH quinone oxidoreductase, oxidoreductase mlr3212 SWALL:Q98GR0 (EMBL:AP003001) (329 aa) fasta scores: E(): 2.9e-70, 60.06% id in 323 aa; zinc-binding dehydrogenase 5100878..5101861 Bordetella bronchiseptica RB50 2662228 NP_891329.1 CDS BB4796 NC_002927.3 5101906 5102889 R ortholog of Bordetella pertussis (BX470248) BP0660; Similar to Pseudomonas aeruginosa probable transcriptional regulator pa0218 SWALL:Q9I6S0 (EMBL:AE004459) (306 aa) fasta scores: E(): 2.3e-27, 32.88% id in 298 aa, and to Rhizobium loti transcriptional regulator mll7443 SWALL:Q986A7 (EMBL:AP003011) (303 aa) fasta scores: E(): 4.9e-21, 29.09% id in 299 aa; LysR family transcriptional regulator complement(5101906..5102889) Bordetella bronchiseptica RB50 2662229 NP_891330.1 CDS BB4797 NC_002927.3 5103037 5105178 R ortholog of Bordetella pertussis (BX470248) BP0661; Similar to Entamoeba histolytica acetyl-CoA synthetase SWALL:Q9NAT4 (EMBL:AF286346) (713 aa) fasta scores: E(): 1.4e-56, 32.46% id in 687 aa, and to Pseudomonas paucimobilis feruloyl-CoA synthetase ferA SWALL:Q8RR27 (EMBL:AB072376) (709 aa) fasta scores: E(): 1.2e-65, 35.7% id in 703 aa; acetyl-CoA synthetase complement(5103037..5105178) Bordetella bronchiseptica RB50 2662223 NP_891331.1 CDS BB4798 NC_002927.3 5105178 5105957 R ortholog of Bordetella pertussis (BX470248) BP0662; Similar to Clostridium perfringens 3-hydroxybutryl-CoA dehydratase Crt or cpe2301 SWALL:Q8XI23 (EMBL:AP003193) (260 aa) fasta scores: E(): 2.2e-26, 35.06% id in 251 aa, and to Xanthomonas axonopodis 3-hydroxybutyryl-CoA dehydratase Crt or xac1584 SWALL:AAM36452 (EMBL:AE011790) (260 aa) fasta scores: E(): 3.3e-27, 37.5% id in 256 aa; enoyl-CoA hydratase complement(5105178..5105957) Bordetella bronchiseptica RB50 2659209 NP_891332.1 CDS BB4799 NC_002927.3 5106356 5107249 D ortholog of Bordetella pertussis (BX470248) BP0663; Similar to Thermoanaerobacter tengcongensis ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, periplasmic components taua or tte0643 SWALL:Q8RC09 (EMBL:AE013032) (336 aa) fasta scores: E(): 1.4e-15, 25.25% id in 297 aa, and to Clostridium acetobutylicum ABC transporter periplasmic-binding, cac0620 SWALL:Q97LE2 (EMBL:AE007577) (338 aa) fasta scores: E(): 1.6e-08, 22.46% id in 276 aa; nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein 5106356..5107249 Bordetella bronchiseptica RB50 2659210 NP_891333.1 CDS BB4800 NC_002927.3 5107313 5108332 D ortholog of Bordetella pertussis (BX470248) BP0664; Similar to Agrobacterium tumefaciens hypothetical protein atu4727 atu4727 or agr_l_312 SWALL:Q8U6S9 (EMBL:AE009401) (329 aa) fasta scores: E(): 1.9e-44, 40.72% id in 329 aa, and to Rhizobium meliloti hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.5e-44, 40.06% id in 322 aa; hypothetical protein 5107313..5108332 Bordetella bronchiseptica RB50 2659205 NP_891334.1 CDS BB4801 NC_002927.3 5108389 5109369 D ortholog of Bordetella pertussis (BX470248) BP0665; Similar to Saccharopolyspora erythraea thymidine diphosphoglucose 4,6-dehydratase gdH SWALL:Q54116 (EMBL:L37354) (329 aa) fasta scores: E(): 7.1e-13, 26.52% id in 328 aa, and to Streptomyces tenebrarius apre SWALL:Q9F5R6 (EMBL:AF306787) (332 aa) fasta scores: E(): 9.4e-13, 29.42% id in 333 aa; thymidine diphosphoglucose 4,6-dehydratase 5108389..5109369 Bordetella bronchiseptica RB50 2659206 NP_891335.1 CDS glmS NC_002927.3 5109569 5111401 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(5109569..5111401) Bordetella bronchiseptica RB50 2659696 NP_891336.1 CDS BB4803 NC_002927.3 5111551 5112039 D ortholog of Bordetella pertussis (BX470248) BP0667; transcription regulator AsnC 5111551..5112039 Bordetella bronchiseptica RB50 2659690 NP_891337.1 CDS BB4804 NC_002927.3 5112061 5113278 R ortholog of Bordetella pertussis (BX470248) BP0668; thiolase complement(5112061..5113278) Bordetella bronchiseptica RB50 2659155 NP_891338.1 CDS BB4805 NC_002927.3 5113275 5115392 R ortholog of Bordetella pertussis (BX470248) BP0669; bifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase complement(5113275..5115392) Bordetella bronchiseptica RB50 2659163 NP_891339.1 CDS BB4806 NC_002927.3 5115650 5117452 D ortholog of Bordetella pertussis (BX470248) BP0670; acyl-CoA dehydrogenase 5115650..5117452 Bordetella bronchiseptica RB50 2659677 NP_891340.1 CDS BB4807 NC_002927.3 5117534 5118520 D ortholog of Bordetella pertussis (BX470248) BP0671; hypothetical protein 5117534..5118520 Bordetella bronchiseptica RB50 2659662 NP_891341.1 CDS BB4808 NC_002927.3 5118572 5120761 D ortholog of Bordetella pertussis (BX470248) BP0672; acetyl-CoA synthetase 5118572..5120761 Bordetella bronchiseptica RB50 2661275 NP_891342.1 CDS BB4809 NC_002927.3 5120758 5121555 D Catalyzes the first step in the citric acid cycle. Oxaloacetate and acetyl-CoA bind to citrate synthase, which then catalyzes the reaction which joins the two compounds together; citrate synthase 5120758..5121555 Bordetella bronchiseptica RB50 2661276 NP_891343.1 CDS BB4810 NC_002927.3 5121552 5122388 D ortholog of Bordetella pertussis (BX470248) BP0674; transcriptional regulator 5121552..5122388 Bordetella bronchiseptica RB50 2661277 NP_891344.1 CDS BB4811 NC_002927.3 5122408 5124783 D ortholog of Bordetella pertussis (BX470248) BP0675; molybdopterin oxidoreductase 5122408..5124783 Bordetella bronchiseptica RB50 2660355 NP_891345.1 CDS BB4812 NC_002927.3 5124780 5125661 R hypothetical protein complement(5124780..5125661) Bordetella bronchiseptica RB50 2661851 NP_891346.1 CDS BB4813 NC_002927.3 5125760 5126506 R AraC family transcriptional regulator complement(5125760..5126506) Bordetella bronchiseptica RB50 2662667 NP_891347.1 CDS BB4814 NC_002927.3 5126528 5127589 R ortholog of Bordetella pertussis (BX470248) BP3727; glycosyl transferase family protein complement(5126528..5127589) Bordetella bronchiseptica RB50 2662673 NP_891348.1 CDS rkpK NC_002927.3 5127586 5128908 R ortholog of Bordetella pertussis (BX470248) BP3728; UDP-glucose 6-dehydrogenase complement(5127586..5128908) Bordetella bronchiseptica RB50 2662674 NP_891349.1 CDS BB4816 NC_002927.3 5129020 5130405 R ortholog of Bordetella pertussis (BX470248) BP3729; hypothetical protein complement(5129020..5130405) Bordetella bronchiseptica RB50 2662679 NP_891350.1 CDS glmU NC_002927.3 5130402 5131775 R ortholog of Bordetella pertussis (BX470248) BP3730; UDP-N-acetylglucosamine synthesis bifunctional protein complement(5130402..5131775) Bordetella bronchiseptica RB50 2662672 NP_891351.1 CDS BB4818 NC_002927.3 5131850 5132563 R ortholog of Bordetella pertussis (BX470248) BP3731; hypothetical protein complement(5131850..5132563) Bordetella bronchiseptica RB50 2662662 NP_891352.1 CDS BB4819 NC_002927.3 5132778 5133422 R ortholog of Bordetella pertussis (BX470248) BP3732; hypothetical protein complement(5132778..5133422) Bordetella bronchiseptica RB50 2662663 NP_891353.1 CDS BB4820 NC_002927.3 5133550 5133771 D ortholog of Bordetella pertussis (BX470248) BP3733; hypothetical protein 5133550..5133771 Bordetella bronchiseptica RB50 2662670 NP_891354.1 CDS BB4821 NC_002927.3 5133943 5134545 R ortholog of Bordetella pertussis (BX470248) BP3734; SCO1/SenC family protein complement(5133943..5134545) Bordetella bronchiseptica RB50 2662671 NP_891355.1 CDS BB4822 NC_002927.3 5134565 5135458 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(5134565..5135458) Bordetella bronchiseptica RB50 2662669 NP_891356.1 CDS BB4823 NC_002927.3 5135469 5136500 R ortholog of Bordetella pertussis (BX470248) BP3736; cytochrome oxidase assembly protein complement(5135469..5136500) Bordetella bronchiseptica RB50 2662664 NP_891357.1 CDS BB4824 NC_002927.3 5136503 5137123 R ortholog of Bordetella pertussis (BX470248) BP3737; hypothetical protein complement(5136503..5137123) Bordetella bronchiseptica RB50 2662644 NP_891358.1 CDS BB4825 NC_002927.3 5137149 5137871 R ortholog of Bordetella pertussis (BX470248) BP3738; hypothetical protein complement(5137149..5137871) Bordetella bronchiseptica RB50 2662645 NP_891359.1 CDS BB4826 NC_002927.3 5137956 5138156 D ortholog of Bordetella pertussis (BX470248) BP3739; hypothetical protein 5137956..5138156 Bordetella bronchiseptica RB50 2662646 NP_891360.1 CDS coIII NC_002927.3 5138266 5139141 R ortholog of Bordetella pertussis (BX470248) BP3740; cytochrome c oxidase subunit III complement(5138266..5139141) Bordetella bronchiseptica RB50 2662647 NP_891361.1 CDS BB4828 NC_002927.3 5139178 5139402 R ortholog of Bordetella pertussis (BX470248) BP3741; hypothetical protein complement(5139178..5139402) Bordetella bronchiseptica RB50 2662651 NP_891362.1 CDS BB4829 NC_002927.3 5139416 5139538 R ortholog of Bordetella pertussis (BX470248) BP3742; hypothetical protein complement(5139416..5139538) Bordetella bronchiseptica RB50 2662652 NP_891363.1 CDS ctaD NC_002927.3 5139573 5141180 R ortholog of Bordetella pertussis (BX470248) BP3743; cytochrome c oxidase polypeptide I complement(5139573..5141180) Bordetella bronchiseptica RB50 2662656 NP_891364.1 CDS BB4831 NC_002927.3 5141291 5142448 R ortholog of Bordetella pertussis (BX470248) BP3744; bifunctional protein complement(5141291..5142448) Bordetella bronchiseptica RB50 2659799 NP_891365.1 CDS BB4832 NC_002927.3 5142717 5143550 D ortholog of Bordetella pertussis (BX470248) BP3745; hypothetical protein 5142717..5143550 Bordetella bronchiseptica RB50 2661337 NP_891366.1 CDS BB4833 NC_002927.3 5143696 5146239 R ortholog of Bordetella pertussis (BX470248) BP3746; sodium/hydrogen exchanger family protein complement(5143696..5146239) Bordetella bronchiseptica RB50 2661400 NP_891367.1 CDS BB4834 NC_002927.3 5146417 5147229 D ortholog of Bordetella pertussis (BX470248) BP3747; hypothetical protein 5146417..5147229 Bordetella bronchiseptica RB50 2661482 NP_891368.1 CDS rpoH NC_002927.3 5147623 5148546 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(5147623..5148546) Bordetella bronchiseptica RB50 2661504 NP_891369.1 CDS BB4836 NC_002927.3 5148654 5149343 R ortholog of Bordetella pertussis (BX470248) BP3749; hypothetical protein complement(5148654..5149343) Bordetella bronchiseptica RB50 2659487 NP_891370.1 CDS BB4837 NC_002927.3 5149404 5150252 R ortholog of Bordetella pertussis (BX470248) BP3750; esterase complement(5149404..5150252) Bordetella bronchiseptica RB50 2659465 NP_891371.1 CDS adhI NC_002927.3 5150254 5151360 R ortholog of Bordetella pertussis (BX470248) BP3751; alcohol dehydrogenase class III complement(5150254..5151360) Bordetella bronchiseptica RB50 2659466 NP_891372.1 CDS BB4839 NC_002927.3 5151544 5152308 D ortholog of Bordetella pertussis (BX470248) BP3752; hypothetical protein 5151544..5152308 Bordetella bronchiseptica RB50 2659520 NP_891373.1 CDS gltB NC_002927.3 5152653 5157392 D ortholog of Bordetella pertussis (BX470248) BP3753; glutamate synthase [NADPH] large chain 5152653..5157392 Bordetella bronchiseptica RB50 2659521 NP_891374.2 CDS gltD NC_002927.3 5157401 5158867 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 5157401..5158867 Bordetella bronchiseptica RB50 2659611 NP_891375.1 CDS BB4842 NC_002927.3 5159159 5159797 D ortholog of Bordetella pertussis (BX470248) BP3755; outer membrane protein 5159159..5159797 Bordetella bronchiseptica RB50 2660555 NP_891376.1 CDS BB4843 NC_002927.3 5159879 5160862 D ortholog of Bordetella pertussis (BX470248) BP3756; hypothetical protein 5159879..5160862 Bordetella bronchiseptica RB50 2660556 NP_891377.1 CDS BB4844 NC_002927.3 5160957 5161853 D ortholog of Bordetella pertussis (BX470248) BP3757; ABC transporter ATP-binding protein 5160957..5161853 Bordetella bronchiseptica RB50 2660634 NP_891378.1 CDS BB4845 NC_002927.3 5161850 5162635 D ortholog of Bordetella pertussis (BX470248) BP3758; hypothetical protein 5161850..5162635 Bordetella bronchiseptica RB50 2660668 NP_891379.1 CDS BB4846 NC_002927.3 5162648 5163154 D ortholog of Bordetella pertussis (BX470248) BP3759; mce related protein 5162648..5163154 Bordetella bronchiseptica RB50 2661138 NP_891380.1 CDS BB4847 NC_002927.3 5163230 5164045 D ortholog of Bordetella pertussis (BX470248) BP3760; lipoprotein 5163230..5164045 Bordetella bronchiseptica RB50 2660723 NP_891381.1 CDS BB4848 NC_002927.3 5164079 5164702 D ortholog of Bordetella pertussis (BX470248) BP3761; hypothetical protein 5164079..5164702 Bordetella bronchiseptica RB50 2660724 NP_891382.1 CDS BB4849 NC_002927.3 5164768 5165619 D ortholog of Bordetella pertussis (BX470248) BP3762; ABC transporter ATP-binding protein 5164768..5165619 Bordetella bronchiseptica RB50 2661125 NP_891383.1 CDS BB4850 NC_002927.3 5165616 5166431 D ortholog of Bordetella pertussis (BX470248) BP3764; ABC transporter 5165616..5166431 Bordetella bronchiseptica RB50 2661126 NP_891384.1 CDS BB4851 NC_002927.3 5166431 5166682 D ortholog of Bordetella pertussis (BX470248) BP3765; BolA-like protein 5166431..5166682 Bordetella bronchiseptica RB50 2660958 NP_891385.1 CDS murA NC_002927.3 5166682 5167950 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 5166682..5167950 Bordetella bronchiseptica RB50 2660990 NP_891386.1 CDS hisG NC_002927.3 5167947 5168618 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 5167947..5168618 Bordetella bronchiseptica RB50 2660804 NP_891387.1 CDS hisD NC_002927.3 5168651 5169973 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 5168651..5169973 Bordetella bronchiseptica RB50 2659705 NP_891388.1 CDS hisC NC_002927.3 5169970 5171067 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 5169970..5171067 Bordetella bronchiseptica RB50 2659706 NP_891389.1 CDS hisB NC_002927.3 5171069 5171656 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 5171069..5171656 Bordetella bronchiseptica RB50 2659669 NP_891390.1 CDS hisH NC_002927.3 5171688 5172365 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 5171688..5172365 Bordetella bronchiseptica RB50 2661580 NP_891391.2 CDS hisA NC_002927.3 5172429 5173169 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 5172429..5173169 Bordetella bronchiseptica RB50 2661583 NP_891392.1 CDS hisF NC_002927.3 5173166 5173975 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 5173166..5173975 Bordetella bronchiseptica RB50 2661584 NP_891393.1 CDS hisI NC_002927.3 5173972 5174376 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 5173972..5174376 Bordetella bronchiseptica RB50 2659534 NP_891394.1 CDS hisE NC_002927.3 5174373 5174720 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 5174373..5174720 Bordetella bronchiseptica RB50 2659535 NP_891395.1 CDS BB4862 NC_002927.3 5174735 5175103 D ortholog of Bordetella pertussis (BX470248) BP3776; MttA/Hcf106 family protein 5174735..5175103 Bordetella bronchiseptica RB50 2660027 NP_891396.1 CDS tatA NC_002927.3 5175119 5175346 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase A 5175119..5175346 Bordetella bronchiseptica RB50 2660402 NP_891397.1 CDS tatB NC_002927.3 5175446 5175868 D ortholog of Bordetella pertussis (BX470248) BP3778; Sec-independent protein translocase 5175446..5175868 Bordetella bronchiseptica RB50 2660403 NP_891398.1 CDS tatC NC_002927.3 5175865 5176665 D ortholog of Bordetella pertussis (BX470248) BP3779; Sec-independent protein translocase 5175865..5176665 Bordetella bronchiseptica RB50 2660416 NP_891399.1 CDS BB4866 NC_002927.3 5176743 5177099 D DNA-binding protein 5176743..5177099 Bordetella bronchiseptica RB50 2660448 NP_891400.1 CDS degQ NC_002927.3 5177110 5178225 R ortholog of Bordetella pertussis (BX470248) BP0280; protease complement(5177110..5178225) Bordetella bronchiseptica RB50 2660449 NP_891401.1 CDS BB4868 NC_002927.3 5178279 5179055 D ortholog of Bordetella pertussis (BX470248) BP0279; hypothetical protein 5178279..5179055 Bordetella bronchiseptica RB50 2660656 NP_891402.1 CDS mscL NC_002927.3 5179080 5179538 R homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(5179080..5179538) Bordetella bronchiseptica RB50 2660712 NP_891403.1 CDS petA NC_002927.3 5179678 5180319 D ortholog of Bordetella pertussis (BX470248) BP0277; ubiquinol-cytochrome C reductase iron-sulfur subunit 5179678..5180319 Bordetella bronchiseptica RB50 2660713 NP_891404.1 CDS petB NC_002927.3 5180384 5181766 D ortholog of Bordetella pertussis (BX470248) BP0276; cytochrome B 5180384..5181766 Bordetella bronchiseptica RB50 2661040 NP_891405.1 CDS petC NC_002927.3 5181786 5182640 D ortholog of Bordetella pertussis (BX470248) BP0275; cytochrome C1 precursor 5181786..5182640 Bordetella bronchiseptica RB50 2659983 NP_891406.1 CDS sspA NC_002927.3 5182799 5183410 D ortholog of Bordetella pertussis (BX470248) BP0274; stringent starvation protein A 5182799..5183410 Bordetella bronchiseptica RB50 2662079 NP_891407.1 CDS sspB NC_002927.3 5183420 5183869 D ortholog of Bordetella pertussis (BX470248) BP0273; ClpXP protease specificity-enhancing factor 5183420..5183869 Bordetella bronchiseptica RB50 2662080 NP_891408.1 CDS BB4875 NC_002927.3 5184074 5184388 R hypothetical protein complement(5184074..5184388) Bordetella bronchiseptica RB50 2662156 NP_891409.1 CDS BB4876 NC_002927.3 5184444 5185427 R hypothetical protein complement(5184444..5185427) Bordetella bronchiseptica RB50 2662157 NP_891410.1 CDS BB4877 NC_002927.3 5185464 5186414 R ortholog of Bordetella pertussis (BX470248) BP2856; hypothetical protein complement(5185464..5186414) Bordetella bronchiseptica RB50 2659013 NP_891411.1 CDS BB4878 NC_002927.3 5186433 5187314 R hydrolase complement(5186433..5187314) Bordetella bronchiseptica RB50 2659014 NP_891412.1 CDS BB4879 NC_002927.3 5187403 5188326 D LysR family transcriptional regulator 5187403..5188326 Bordetella bronchiseptica RB50 2659015 NP_891413.1 CDS trxB NC_002927.3 5188332 5189372 R thioredoxin reductase complement(5188332..5189372) Bordetella bronchiseptica RB50 2659149 NP_891414.1 CDS BB4881 NC_002927.3 5189590 5190399 D IclR family transcriptional regulator 5189590..5190399 Bordetella bronchiseptica RB50 2659625 NP_891415.1 CDS BB4882 NC_002927.3 5190467 5192149 D hypothetical protein 5190467..5192149 Bordetella bronchiseptica RB50 2659752 NP_891416.1 CDS BB4883 NC_002927.3 5192146 5192790 D hypothetical protein 5192146..5192790 Bordetella bronchiseptica RB50 2661246 NP_891417.1 CDS BB4884 NC_002927.3 5192787 5194007 D dehydratase/racemase 5192787..5194007 Bordetella bronchiseptica RB50 2661247 NP_891418.1 CDS BB4885 NC_002927.3 5194030 5195025 D lipoprotein 5194030..5195025 Bordetella bronchiseptica RB50 2662060 NP_891419.1 CDS BB4886 NC_002927.3 5195098 5196303 R dehydratase/racemase complement(5195098..5196303) Bordetella bronchiseptica RB50 2662061 NP_891420.1 CDS BB4887 NC_002927.3 5196300 5196548 R glutaredoxin complement(5196300..5196548) Bordetella bronchiseptica RB50 2661256 NP_891421.1 CDS BB4888 NC_002927.3 5196545 5197462 R reductase complement(5196545..5197462) Bordetella bronchiseptica RB50 2661257 NP_891422.1 CDS BB4889 NC_002927.3 5197719 5198696 D ortholog of Bordetella pertussis (BX470248) BP3782; hypothetical protein 5197719..5198696 Bordetella bronchiseptica RB50 2661258 NP_891423.1 CDS ptxA NC_002927.3 5198963 5199772 D ortholog of Bordetella pertussis (BX470248) BP3783; toxin subunit 1 5198963..5199772 Bordetella bronchiseptica RB50 2662068 NP_891424.1 CDS ptxB NC_002927.3 5199812 5200492 D ortholog of Bordetella pertussis (BX470248) BP3784; toxin subunit 2 5199812..5200492 Bordetella bronchiseptica RB50 2662069 NP_891425.1 CDS ptxD NC_002927.3 5200486 5200944 D ortholog of Bordetella pertussis (BX470248) BP3785; toxin subunit 4 5200486..5200944 Bordetella bronchiseptica RB50 2662001 NP_891426.1 CDS ptxE NC_002927.3 5200956 5201318 D ortholog of Bordetella pertussis (BX470248) BP3786; toxin subunit 5 5200956..5201318 Bordetella bronchiseptica RB50 2663360 NP_891427.1 CDS ptxC NC_002927.3 5201401 5202084 D ortholog of Bordetella pertussis (BX470248) BP3787; toxin subunit 3 5201401..5202084 Bordetella bronchiseptica RB50 2663361 NP_891428.1 CDS ptlA NC_002927.3 5202140 5202448 D ortholog of Bordetella pertussis (BX470248) BP3788; toxin transport protein 5202140..5202448 Bordetella bronchiseptica RB50 2663871 NP_891429.1 CDS ptlB NC_002927.3 5202467 5202781 D ortholog of Bordetella pertussis (BX470248) BP3789; toxin transport protein 5202467..5202781 Bordetella bronchiseptica RB50 2663872 NP_891430.1 CDS BB4897 NC_002927.3 5202778 5205252 D ortholog of Bordetella pertussis (BX470248) BP3790; secretion system protein 5202778..5205252 Bordetella bronchiseptica RB50 2659886 NP_891431.1 CDS BB4898 NC_002927.3 5205260 5206645 D ortholog of Bordetella pertussis (BX470248) BP3791; hypothetical protein 5205260..5206645 Bordetella bronchiseptica RB50 2661380 NP_891432.1 CDS BB4898A NC_002927.3 5206642 5206827 D ortholog of Bordetella pertussis (BX470248) BP3792; secretion system protein 5206642..5206827 Bordetella bronchiseptica RB50 2661381 NP_891433.1 CDS BB4899 NC_002927.3 5206806 5207507 D ortholog of Bordetella pertussis (BX470248) BP3793; secretion system protein 5206806..5207507 Bordetella bronchiseptica RB50 2661338 NP_891434.1 CDS BB4900 NC_002927.3 5207504 5208325 D ortholog of Bordetella pertussis (BX470248) BP3794; secretion system protein 5207504..5208325 Bordetella bronchiseptica RB50 2661339 NP_891435.1 CDS BB4901 NC_002927.3 5208306 5209430 D ortholog of Bordetella pertussis (BX470248) BP3795; secretion system protein 5208306..5209430 Bordetella bronchiseptica RB50 2661610 NP_891436.1 CDS BB4902 NC_002927.3 5209423 5210442 D ortholog of Bordetella pertussis (BX470248) BP3796; secretion system protein 5209423..5210442 Bordetella bronchiseptica RB50 2661611 NP_891437.1 CDS BB4903 NC_002927.3 5210648 5211682 R ortholog of Bordetella pertussis (BX470248) BP3797; hypothetical protein complement(5210648..5211682) Bordetella bronchiseptica RB50 2659508 NP_891438.1 CDS BB4904 NC_002927.3 5211783 5212574 D ortholog of Bordetella pertussis (BX470248) BP3798; AraC family transcriptional regulator 5211783..5212574 Bordetella bronchiseptica RB50 2659558 NP_891439.1 CDS BB4905 NC_002927.3 5212657 5213031 D ortholog of Bordetella pertussis (BX470248) BP3799; hypothetical protein 5212657..5213031 Bordetella bronchiseptica RB50 2660406 NP_891440.1 CDS BB4906 NC_002927.3 5213009 5214418 D ortholog of Bordetella pertussis (BX470248) BP3800; hypothetical protein 5213009..5214418 Bordetella bronchiseptica RB50 2660457 NP_891441.1 CDS BB4907 NC_002927.3 5214411 5215793 D ortholog of Bordetella pertussis (BX470248) BP3801; hypothetical protein 5214411..5215793 Bordetella bronchiseptica RB50 2660458 NP_891442.1 CDS BB4908 NC_002927.3 5216128 5217732 D ortholog of Bordetella pertussis (BX470248) BP3802; peptide ABC transporter substrate-binding protein 5216128..5217732 Bordetella bronchiseptica RB50 2660506 NP_891443.1 CDS BB4909 NC_002927.3 5217768 5218781 D ortholog of Bordetella pertussis (BX470248) BP3803; transport system permease 5217768..5218781 Bordetella bronchiseptica RB50 2661081 NP_891444.1 CDS BB4910 NC_002927.3 5218792 5219718 D ortholog of Bordetella pertussis (BX470248) BP3804; transport system permease 5218792..5219718 Bordetella bronchiseptica RB50 2661131 NP_891445.1 CDS BB4911 NC_002927.3 5219726 5221447 D ortholog of Bordetella pertussis (BX470248) BP3805+BP0167; ABC transporter ATP-binding protein 5219726..5221447 Bordetella bronchiseptica RB50 2661041 NP_891446.1 CDS BB4912 NC_002927.3 5221454 5222368 R ortholog of Bordetella pertussis (BX470248) BP0168; hypothetical protein complement(5221454..5222368) Bordetella bronchiseptica RB50 2659691 NP_891447.1 CDS BB4913 NC_002927.3 5222346 5222975 R ortholog of Bordetella pertussis (BX470248) BP0169; hypothetical protein complement(5222346..5222975) Bordetella bronchiseptica RB50 2659692 NP_891448.1 CDS rhlE NC_002927.3 5223306 5224751 D ortholog of Bordetella pertussis (BX470248) BP0170; ATP-dependent RNA helicase 5223306..5224751 Bordetella bronchiseptica RB50 2659146 NP_891449.1 CDS BB4915 NC_002927.3 5224785 5225414 D ortholog of Bordetella pertussis (BX470248) BP0171; LysE family efflux protein 5224785..5225414 Bordetella bronchiseptica RB50 2659748 NP_891450.1 CDS prfC NC_002927.3 5225463 5227070 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 5225463..5227070 Bordetella bronchiseptica RB50 2661954 NP_891451.1 CDS BB4917 NC_002927.3 5227095 5227778 D ortholog of Bordetella pertussis (BX470248) BP0173; hypothetical protein 5227095..5227778 Bordetella bronchiseptica RB50 2661309 NP_891452.1 CDS bfr NC_002927.3 5227860 5228336 R ortholog of Bordetella pertussis (BX470248) BP0174; bacterioferritin complement(5227860..5228336) Bordetella bronchiseptica RB50 2659727 NP_891453.1 CDS BB4919 NC_002927.3 5228675 5229604 R ortholog of Bordetella pertussis (BX470248) BP0136; integral membrane protein complement(5228675..5229604) Bordetella bronchiseptica RB50 2659728 NP_891454.1 CDS BB4920 NC_002927.3 5229712 5230590 D ortholog of Bordetella pertussis (BX470248) BP0135; LysR family transcriptional regulator 5229712..5230590 Bordetella bronchiseptica RB50 2659904 NP_891455.1 CDS BB4921 NC_002927.3 5230618 5230920 R ortholog of Bordetella pertussis (BX470248) BP0134; bacterioferritin-associated ferredoxin complement(5230618..5230920) Bordetella bronchiseptica RB50 2659923 NP_891456.1 CDS rpoN NC_002927.3 5231013 5232452 R ortholog of Bordetella pertussis (BX470248) BP0133; RNA polymerase sigma-54 factor complement(5231013..5232452) Bordetella bronchiseptica RB50 2659924 NP_891457.1 CDS BB4923 NC_002927.3 5232451 5233098 D ortholog of Bordetella pertussis (BX470248) BP0132; hypothetical protein 5232451..5233098 Bordetella bronchiseptica RB50 2661398 NP_891458.1 CDS leuA NC_002927.3 5233525 5235231 D ortholog of Bordetella pertussis (BX470248) BP0131; 2-isopropylmalate synthase 5233525..5235231 Bordetella bronchiseptica RB50 2661399 NP_891459.1 CDS BB4925 NC_002927.3 5235372 5236655 R ortholog of Bordetella pertussis (BX470248) BP0130; amidase complement(5235372..5236655) Bordetella bronchiseptica RB50 2659450 NP_891460.1 CDS BB4926 NC_002927.3 5236923 5237960 D ortholog of Bordetella pertussis (BX470248) BP0129; LacI family transcriptional regulator 5236923..5237960 Bordetella bronchiseptica RB50 2659480 NP_891461.1 CDS BB4927 NC_002927.3 5237957 5238967 D ortholog of Bordetella pertussis (BX470248) BP0128; iron ABC transporter substrate-binding protein 5237957..5238967 Bordetella bronchiseptica RB50 2659566 NP_891462.1 CDS BB4928 NC_002927.3 5238969 5239784 D ortholog of Bordetella pertussis (BX470248) BP0127; binding-protein-dependent transport system, permease 5238969..5239784 Bordetella bronchiseptica RB50 2659567 NP_891463.1 CDS BB4929 NC_002927.3 5239796 5240629 D ortholog of Bordetella pertussis (BX470248) BP0126; ABC transporter permease 5239796..5240629 Bordetella bronchiseptica RB50 2660753 NP_891464.1 CDS BB4930 NC_002927.3 5240626 5241609 D ortholog of Bordetella pertussis (BX470248) BP0125; ABC transporter ATP-binding protein 5240626..5241609 Bordetella bronchiseptica RB50 2660719 NP_891465.1 CDS BB4931 NC_002927.3 5241632 5242453 D ortholog of Bordetella pertussis (BX470248) BP0123; cAMP phosphodiesterase 5241632..5242453 Bordetella bronchiseptica RB50 2660797 NP_891466.1 CDS BB4932 NC_002927.3 5242559 5243599 D ortholog of Bordetella pertussis (BX470248) BP0122; sugar ABC transporter ATP-binding protein 5242559..5243599 Bordetella bronchiseptica RB50 2660798 NP_891467.1 CDS BB4933 NC_002927.3 5243642 5244934 D ortholog of Bordetella pertussis (BX470248) BP0121; glycerol-3-phosphate ABC transporter substrate-binding protein 5243642..5244934 Bordetella bronchiseptica RB50 2660865 NP_891468.1 CDS BB4934 NC_002927.3 5244945 5245820 D ortholog of Bordetella pertussis (BX470248) BP0120; inner membrane component of binding-protein-dependent transport system 5244945..5245820 Bordetella bronchiseptica RB50 2661132 NP_891469.1 CDS BB4935 NC_002927.3 5245817 5246617 D ortholog of Bordetella pertussis (BX470248) BP0119; inner membrane component of binding-protein-dependent transport system 5245817..5246617 Bordetella bronchiseptica RB50 2660374 NP_891470.1 CDS BB4936 NC_002927.3 5246777 5247094 R ortholog of Bordetella pertussis (BX470248) BP0117; hypothetical protein complement(5246777..5247094) Bordetella bronchiseptica RB50 2659198 NP_891471.1 CDS BB4937 NC_002927.3 5247185 5247532 R ortholog of Bordetella pertussis (BX470248) BP0116; hypothetical protein complement(5247185..5247532) Bordetella bronchiseptica RB50 2659199 NP_891472.1 CDS argS NC_002927.3 5247820 5249505 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 5247820..5249505 Bordetella bronchiseptica RB50 2661661 NP_891473.1 CDS BB4939 NC_002927.3 5249515 5250198 D ortholog of Bordetella pertussis (BX470248) BP0114; hypothetical protein 5249515..5250198 Bordetella bronchiseptica RB50 2659400 NP_891474.1 CDS dsbA NC_002927.3 5250260 5250889 D ortholog of Bordetella pertussis (BX470248) BP0113; thiol:disulfide interchange protein DsbA precursor 5250260..5250889 Bordetella bronchiseptica RB50 2659401 NP_891475.1 CDS metC NC_002927.3 5250971 5252164 R ortholog of Bordetella pertussis (BX470248) BP0112; cystathionine beta-lyase complement(5250971..5252164) Bordetella bronchiseptica RB50 2661278 NP_891476.1 CDS BB4942 NC_002927.3 5252218 5252964 D ortholog of Bordetella pertussis (BX470248) BP0111; hypothetical protein 5252218..5252964 Bordetella bronchiseptica RB50 2661279 NP_891477.1 CDS BB4943 NC_002927.3 5252988 5254046 R ortholog of Bordetella pertussis (BX470248) BP0442; metallo-beta-lactamase family protein complement(5252988..5254046) Bordetella bronchiseptica RB50 2662677 NP_891478.1 CDS BB4944 NC_002927.3 5254121 5254495 D ortholog of Bordetella pertussis (BX470248) BP0441; MerR family transcriptional regulator 5254121..5254495 Bordetella bronchiseptica RB50 2662678 NP_891479.1 CDS ivd NC_002927.3 5254703 5255881 D ortholog of Bordetella pertussis (BX470248) BP0440+BP0444; isovaleryl-CoA dehydrogenase 5254703..5255881 Bordetella bronchiseptica RB50 2661822 NP_891480.1 CDS aceK NC_002927.3 5255920 5257779 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase 5255920..5257779 Bordetella bronchiseptica RB50 2659899 NP_891481.1 CDS BB4947 NC_002927.3 5257814 5258995 D ortholog of Bordetella pertussis (BX470248) BP0447; acetyl-CoA acetyltransferase 5257814..5258995 Bordetella bronchiseptica RB50 2659957 NP_891482.1 CDS accB NC_002927.3 5259096 5260703 D ortholog of Bordetella pertussis (BX470248) BP0448; carboxyltransferase subunit of acetyl-CoA carboxylase 5259096..5260703 Bordetella bronchiseptica RB50 2661546 NP_891483.1 CDS accA NC_002927.3 5260750 5262771 D ortholog of Bordetella pertussis (BX470248) BP0449; biotin carboxylase 5260750..5262771 Bordetella bronchiseptica RB50 2661547 NP_891484.1 CDS BB4950 NC_002927.3 5262805 5263050 R ortholog of Bordetella pertussis (BX470248) BP0450; hypothetical protein complement(5262805..5263050) Bordetella bronchiseptica RB50 2661596 NP_891485.1 CDS argD NC_002927.3 5263064 5264254 R DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase complement(5263064..5264254) Bordetella bronchiseptica RB50 2661599 NP_891486.1 CDS BB4952 NC_002927.3 5264450 5265415 D ortholog of Bordetella pertussis (BX470248) BP0452; hypothetical protein 5264450..5265415 Bordetella bronchiseptica RB50 2661600 NP_891487.1 CDS BB4953 NC_002927.3 5265438 5266451 R ortholog of Bordetella pertussis (BX470248) BP0453; low-specificity D-threonine aldolase complement(5265438..5266451) Bordetella bronchiseptica RB50 2659528 NP_891488.1 CDS BB4954 NC_002927.3 5266783 5267745 D ortholog of Bordetella pertussis (BX470248) BP0454; hypothetical protein 5266783..5267745 Bordetella bronchiseptica RB50 2659529 NP_891489.1 CDS BB4955 NC_002927.3 5267869 5269893 D ortholog of Bordetella pertussis (BX470248) BP0455; hypothetical protein 5267869..5269893 Bordetella bronchiseptica RB50 2659549 NP_891490.1 CDS hemC NC_002927.3 5270090 5272333 D ortholog of Bordetella pertussis (BX470248) BP0456; heme receptor 5270090..5272333 Bordetella bronchiseptica RB50 2659550 NP_891491.1 CDS BB4957 NC_002927.3 5272612 5273070 D ortholog of Bordetella pertussis (BX470248) BP0457; hypothetical protein 5272612..5273070 Bordetella bronchiseptica RB50 2660542 NP_891492.1 CDS BB4958 NC_002927.3 5273087 5274046 D ortholog of Bordetella pertussis (BX470248) BP0458; aminoacyl-tRNA synthetase 5273087..5274046 Bordetella bronchiseptica RB50 2661110 NP_891493.1 CDS BB4959 NC_002927.3 5274033 5276654 R ortholog of Bordetella pertussis (BX470248) BP0459; hypothetical protein complement(5274033..5276654) Bordetella bronchiseptica RB50 2661111 NP_891494.1 CDS topB NC_002927.3 5276718 5279345 D decatenates replicating daughter chromosomes; DNA topoisomerase III 5276718..5279345 Bordetella bronchiseptica RB50 2660796 NP_891495.1 CDS BB4961 NC_002927.3 5279496 5280560 D ortholog of Bordetella pertussis (BX470248) BP0461; hypothetical protein 5279496..5280560 Bordetella bronchiseptica RB50 2661035 NP_891496.1 CDS BB4962 NC_002927.3 5280557 5281330 D ortholog of Bordetella pertussis (BX470248) BP0462; ABC transporter ATP-binding protein 5280557..5281330 Bordetella bronchiseptica RB50 2661036 NP_891497.1 CDS BB4963 NC_002927.3 5281339 5282196 D ortholog of Bordetella pertussis (BX470248) BP0463; ABC transporter permease 5281339..5282196 Bordetella bronchiseptica RB50 2661025 NP_891498.1 CDS idnO NC_002927.3 5282209 5282988 D Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 5282209..5282988 Bordetella bronchiseptica RB50 2660970 NP_891499.1 CDS BB4965 NC_002927.3 5283023 5284495 D ortholog of Bordetella pertussis (BX470248) BP0465; aldehyde dehydrogenase 5283023..5284495 Bordetella bronchiseptica RB50 2660301 NP_891500.1 CDS fabG NC_002927.3 5284523 5285281 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 5284523..5285281 Bordetella bronchiseptica RB50 2660622 NP_891501.1 CDS BB4967 NC_002927.3 5285424 5287274 R ortholog of Bordetella pertussis (BX470248) BP0467; acetolactate synthase large subunit complement(5285424..5287274) Bordetella bronchiseptica RB50 2660048 NP_891502.1 CDS BB4968 NC_002927.3 5287368 5287844 D ortholog of Bordetella pertussis (BX470248) BP0468; transcription regulator AsnC 5287368..5287844 Bordetella bronchiseptica RB50 2659397 NP_891503.1 CDS BB4969 NC_002927.3 5287861 5288781 R ortholog of Bordetella pertussis (BX470248) BP0469; hypothetical protein complement(5287861..5288781) Bordetella bronchiseptica RB50 2663943 NP_891504.1 CDS BB4970 NC_002927.3 5288888 5289388 D ortholog of Bordetella pertussis (BX470248) BP0470; hypothetical protein 5288888..5289388 Bordetella bronchiseptica RB50 2663944 NP_891505.1 CDS ribB NC_002927.3 5289762 5290454 D DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 5289762..5290454 Bordetella bronchiseptica RB50 2663923 NP_891506.1 CDS BB4972 NC_002927.3 5290468 5290983 R ortholog of Bordetella pertussis (BX470248) BP0472; hypothetical protein complement(5290468..5290983) Bordetella bronchiseptica RB50 2660055 NP_891507.1 CDS BB4973 NC_002927.3 5291041 5291565 R hypothetical protein complement(5291041..5291565) Bordetella bronchiseptica RB50 2660056 NP_891508.1 CDS BB4974 NC_002927.3 5291582 5292193 R hypothetical protein complement(5291582..5292193) Bordetella bronchiseptica RB50 2662903 NP_891509.1 CDS BB4975 NC_002927.3 5292307 5293236 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(5292307..5293236) Bordetella bronchiseptica RB50 2662904 NP_891510.1 CDS BB4976 NC_002927.3 5293283 5294266 R integral-membrane protein complement(5293283..5294266) Bordetella bronchiseptica RB50 2662905 NP_891511.1 CDS BB4977 NC_002927.3 5294348 5294785 R hypothetical protein complement(5294348..5294785) Bordetella bronchiseptica RB50 2663481 NP_891512.1 CDS BB4978 NC_002927.3 5294806 5296605 R ortholog of Bordetella pertussis (BX470248) BP0482; hypothetical protein complement(5294806..5296605) Bordetella bronchiseptica RB50 2659807 NP_891513.1 CDS BB4979 NC_002927.3 5296639 5297484 R ortholog of Bordetella pertussis (BX470248) BP0483; AraC family transcriptional regulator complement(5296639..5297484) Bordetella bronchiseptica RB50 2659808 NP_891514.1 CDS lldD NC_002927.3 5297572 5298735 R ortholog of Bordetella pertussis (BX470248) BP0484; L-lactate dehydrogenase complement(5297572..5298735) Bordetella bronchiseptica RB50 2659870 NP_891515.1 CDS BB4981 NC_002927.3 5298890 5299174 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 5298890..5299174 Bordetella bronchiseptica RB50 2661391 NP_891516.1 CDS BB4982 NC_002927.3 5299188 5300159 R ortholog of Bordetella pertussis (BX470248) BP0486; hypothetical protein complement(5299188..5300159) Bordetella bronchiseptica RB50 2659518 NP_891517.1 CDS BB4983 NC_002927.3 5300198 5301625 R ortholog of Bordetella pertussis (BX470248) BP0487; amidase complement(5300198..5301625) Bordetella bronchiseptica RB50 2659519 NP_891518.1 CDS BB4984 NC_002927.3 5301745 5302536 D ortholog of Bordetella pertussis (BX470248) BP0488; transcriptional regulator 5301745..5302536 Bordetella bronchiseptica RB50 2659461 NP_891519.1 CDS BB4985 NC_002927.3 5302552 5304960 R no significant database matches; hypothetical protein complement(5302552..5304960) Bordetella bronchiseptica RB50 2660450 NP_891520.1 CDS BB4986 NC_002927.3 5305008 5306240 R no significant database matches; hypothetical protein complement(5305008..5306240) Bordetella bronchiseptica RB50 2660467 NP_891521.1 CDS gyrB NC_002927.3 5306465 5308918 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(5306465..5308918) Bordetella bronchiseptica RB50 2659578 NP_891522.1 CDS dnaN NC_002927.3 5309013 5310128 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(5309013..5310128) Bordetella bronchiseptica RB50 2660536 NP_891523.1 CDS dnaA NC_002927.3 5310125 5311567 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(5310125..5311567) Bordetella bronchiseptica RB50 2660568 NP_891524.1 CDS rpmH NC_002927.3 5311973 5312107 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 5311973..5312107 Bordetella bronchiseptica RB50 2660643 NP_891525.1 CDS rnpA NC_002927.3 5312203 5312574 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 5312203..5312574 Bordetella bronchiseptica RB50 2660873 NP_891526.1 CDS BB4992 NC_002927.3 5312571 5312843 D ortholog of Bordetella pertussis (BX470248) BP0494; hypothetical protein 5312571..5312843 Bordetella bronchiseptica RB50 2660874 NP_891527.2 CDS BB4993 NC_002927.3 5312892 5314583 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase YidC 5312892..5314583 Bordetella bronchiseptica RB50 2660878 NP_891528.1 CDS katA NC_002927.3 5314847 5316286 D ortholog of Bordetella pertussis (BX470248) BP3852; catalase 5314847..5316286 Bordetella bronchiseptica RB50 2660946 NP_891529.1 CDS BB4995 NC_002927.3 5316347 5317228 R ortholog of Bordetella pertussis (BX470248) BP3853; ABC transporter permease complement(5316347..5317228) Bordetella bronchiseptica RB50 2661086 NP_891530.1 CDS BB4996 NC_002927.3 5317225 5318040 R ortholog of Bordetella pertussis (BX470248) BP3854; ABC transporter ATP-binding protein complement(5317225..5318040) Bordetella bronchiseptica RB50 2661032 NP_891531.1 CDS BB4997 NC_002927.3 5318042 5319085 R ortholog of Bordetella pertussis (BX470248) BP3855; nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein complement(5318042..5319085) Bordetella bronchiseptica RB50 2661012 NP_891532.1 CDS BB4998 NC_002927.3 5319129 5320052 R ortholog of Bordetella pertussis (BX470248) BP3856; taurine catabolism dioxygenase complement(5319129..5320052) Bordetella bronchiseptica RB50 2661013 NP_891533.1 CDS BB4999 NC_002927.3 5320182 5321381 R ortholog of Bordetella pertussis (BX470248) BP3857; hydrolase complement(5320182..5321381) Bordetella bronchiseptica RB50 2659341 NP_891534.1 CDS BB5000 NC_002927.3 5321439 5322455 R ortholog of Bordetella pertussis (BX470248) BP3858; transport ATP-binding protein complement(5321439..5322455) Bordetella bronchiseptica RB50 2659342 NP_891535.1 CDS BB5001 NC_002927.3 5322452 5323453 R ortholog of Bordetella pertussis (BX470248) BP3859; transport system ATP-binding protein complement(5322452..5323453) Bordetella bronchiseptica RB50 2659115 NP_891536.1 CDS BB5002 NC_002927.3 5323480 5324400 R ortholog of Bordetella pertussis (BX470248) BP3860; transport system permease complement(5323480..5324400) Bordetella bronchiseptica RB50 2662114 NP_891537.1 CDS BB5003 NC_002927.3 5324397 5325371 R ortholog of Bordetella pertussis (BX470248) BP3861; transport system permease complement(5324397..5325371) Bordetella bronchiseptica RB50 2659136 NP_891538.1 CDS BB5004 NC_002927.3 5325391 5326977 R ortholog of Bordetella pertussis (BX470248) BP3862; peptide ABC transporter substrate-binding protein complement(5325391..5326977) Bordetella bronchiseptica RB50 2662213 NP_891539.1 CDS trmE NC_002927.3 5327094 5328446 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 5327094..5328446 Bordetella bronchiseptica RB50 2659001 NP_891540.1 CDS BB5006 NC_002927.3 5328391 5329665 R ortholog of Bordetella pertussis (BX470248) BP3864; hypothetical protein complement(5328391..5329665) Bordetella bronchiseptica RB50 2662129 NP_891541.1 CDS BB5007 NC_002927.3 5330223 5330903 D ortholog of Bordetella pertussis (BX470248) BP3865; response regulator protein 5330223..5330903 Bordetella bronchiseptica RB50 2659624 NP_891542.1 CDS BB5008 NC_002927.3 5330938 5332353 D ortholog of Bordetella pertussis (BX470248) BP3866; sensor kinase 5330938..5332353 Bordetella bronchiseptica RB50 2661996 NP_891543.1 CDS BB5009 NC_002927.3 5332474 5333478 D ortholog of Bordetella pertussis (BX470248) BP3867; hypothetical protein 5332474..5333478 Bordetella bronchiseptica RB50 2659217 NP_891544.1 CDS BB5010 NC_002927.3 5333583 5334020 D ortholog of Bordetella pertussis (BX470248) BP3868; hypothetical protein 5333583..5334020 Bordetella bronchiseptica RB50 2659697 NP_891545.1 CDS BB5011 NC_002927.3 5334017 5335540 D ortholog of Bordetella pertussis (BX470248) BP3869; hypothetical protein 5334017..5335540 Bordetella bronchiseptica RB50 2659698 NP_891546.1 CDS BB5012 NC_002927.3 5335616 5336809 R catalyzes the transfer of an amino moiety; aminotransferase complement(5335616..5336809) Bordetella bronchiseptica RB50 2661364 NP_891547.1 CDS BB5013 NC_002927.3 5337182 5337388 D ortholog of Bordetella pertussis (BX470248) BP3871; cold shock-like protein 5337182..5337388 Bordetella bronchiseptica RB50 2661365 BBt01 tRNA BBt01 NC_002927.3 6221 6307 D tRNA-Tyr 6221..6307 Bordetella bronchiseptica RB50 3131220 BBt02 tRNA BBt02 NC_002927.3 6496 6569 D tRNA-Gly 6496..6569 Bordetella bronchiseptica RB50 3131254 BBt03 tRNA BBt03 NC_002927.3 6576 6650 D tRNA-Thr 6576..6650 Bordetella bronchiseptica RB50 3131269 BBt04 tRNA BBt04 NC_002927.3 8008 8083 D tRNA-Trp 8008..8083 Bordetella bronchiseptica RB50 3131250 BBt05 tRNA BBt05 NC_002927.3 321147 321223 D tRNA-Pro 321147..321223 Bordetella bronchiseptica RB50 3131234 BBt06 tRNA BBt06 NC_002927.3 395490 395565 R tRNA-Phe complement(395490..395565) Bordetella bronchiseptica RB50 3131231 BBt07 tRNA BBt07 NC_002927.3 530739 530823 R tRNA-Leu complement(530739..530823) Bordetella bronchiseptica RB50 3131215 BBt08 tRNA BBt08 NC_002927.3 544134 544207 D tRNA-Gly 544134..544207 Bordetella bronchiseptica RB50 3131240 BBt09 tRNA BBt09 NC_002927.3 961270 961346 D tRNA-Gln 961270..961346 Bordetella bronchiseptica RB50 3131246 BBt10 tRNA BBt10 NC_002927.3 1429736 1429812 R tRNA-Asp complement(1429736..1429812) Bordetella bronchiseptica RB50 3131273 BBt11 tRNA BBt11 NC_002927.3 1429848 1429923 R tRNA-Glu complement(1429848..1429923) Bordetella bronchiseptica RB50 3131270 BBt12 tRNA BBt12 NC_002927.3 1429950 1430025 R tRNA-Ala complement(1429950..1430025) Bordetella bronchiseptica RB50 3131267 BBt13 tRNA BBt13 NC_002927.3 1444508 1444584 R tRNA-Asp complement(1444508..1444584) Bordetella bronchiseptica RB50 3131248 BBt14 tRNA BBt14 NC_002927.3 1444620 1444695 R tRNA-Glu complement(1444620..1444695) Bordetella bronchiseptica RB50 3131249 BBt15 tRNA BBt15 NC_002927.3 1444727 1444802 R tRNA-Ala complement(1444727..1444802) Bordetella bronchiseptica RB50 3131232 BBt16 tRNA BBt16 NC_002927.3 1525999 1526073 R tRNA-Arg complement(1525999..1526073) Bordetella bronchiseptica RB50 3131253 BBt17 tRNA BBt17 NC_002927.3 1574071 1574147 D tRNA-Pro 1574071..1574147 Bordetella bronchiseptica RB50 3131258 BBt18 tRNA BBt18 NC_002927.3 1669653 1669729 D tRNA-Arg 1669653..1669729 Bordetella bronchiseptica RB50 3131214 BBt19 tRNA BBt19 NC_002927.3 1750478 1750553 D tRNA-His 1750478..1750553 Bordetella bronchiseptica RB50 3131272 BBt20 tRNA BBt20 NC_002927.3 1782469 1782543 D tRNA-Met 1782469..1782543 Bordetella bronchiseptica RB50 3131212 BBt21 tRNA BBt21 NC_002927.3 1828380 1828472 D tRNA-Ser 1828380..1828472 Bordetella bronchiseptica RB50 3131229 BBt22 tRNA BBt22 NC_002927.3 1843200 1843276 D tRNA-Arg 1843200..1843276 Bordetella bronchiseptica RB50 3131252 BBt23 tRNA BBt23 NC_002927.3 1858392 1858468 D tRNA-Arg 1858392..1858468 Bordetella bronchiseptica RB50 3131211 BBt24 tRNA BBt24 NC_002927.3 1974551 1974627 D tRNA-Ile 1974551..1974627 Bordetella bronchiseptica RB50 3131263 BBt25 tRNA BBt25 NC_002927.3 1974648 1974723 D tRNA-Ala 1974648..1974723 Bordetella bronchiseptica RB50 3131237 BBt26 tRNA BBt26 NC_002927.3 2100978 2101054 R tRNA-Met complement(2100978..2101054) Bordetella bronchiseptica RB50 3131265 BBt27 tRNA BBt27 NC_002927.3 2110538 2110622 R tRNA-Leu complement(2110538..2110622) Bordetella bronchiseptica RB50 3131245 BBt28 tRNA BBt28 NC_002927.3 2111483 2111567 R tRNA-Leu complement(2111483..2111567) Bordetella bronchiseptica RB50 3131244 BBt29 tRNA BBt29 NC_002927.3 2117960 2118035 D tRNA-Val 2117960..2118035 Bordetella bronchiseptica RB50 3131242 BBt30 tRNA BBt30 NC_002927.3 2191896 2191972 D tRNA-Pro 2191896..2191972 Bordetella bronchiseptica RB50 3131236 BBt31 tRNA BBt31 NC_002927.3 2201249 2201325 D tRNA-Met 2201249..2201325 Bordetella bronchiseptica RB50 3131235 BBt32 tRNA BBt32 NC_002927.3 2289502 2289578 D tRNA-Val 2289502..2289578 Bordetella bronchiseptica RB50 3131218 BBt33 tRNA BBt33 NC_002927.3 2336338 2336424 D tRNA-Leu 2336338..2336424 Bordetella bronchiseptica RB50 3131209 BBt34 tRNA BBt34 NC_002927.3 2648847 2648922 R tRNA-Ala complement(2648847..2648922) Bordetella bronchiseptica RB50 3131268 BBt35 tRNA BBt35 NC_002927.3 3371190 3371268 R tRNA-Met complement(3371190..3371268) Bordetella bronchiseptica RB50 3131228 BBt36 tRNA BBt36 NC_002927.3 3481554 3481630 D tRNA-Met 3481554..3481630 Bordetella bronchiseptica RB50 3131239 BBt37 tRNA BBt37 NC_002927.3 3485786 3485861 R tRNA-Asn complement(3485786..3485861) Bordetella bronchiseptica RB50 3131256 BBt38 tRNA BBt38 NC_002927.3 3486033 3486108 D tRNA-Thr 3486033..3486108 Bordetella bronchiseptica RB50 3131241 BBt39 tRNA BBt39 NC_002927.3 3620665 3620740 R tRNA-Ala complement(3620665..3620740) Bordetella bronchiseptica RB50 3131259 BBt40 tRNA BBt40 NC_002927.3 3620761 3620837 R tRNA-Ile complement(3620761..3620837) Bordetella bronchiseptica RB50 3131266 BBt41 tRNA BBt41 NC_002927.3 4114480 4114564 R tRNA-Leu complement(4114480..4114564) Bordetella bronchiseptica RB50 3131227 BBt42 tRNA BBt42 NC_002927.3 4117535 4117619 D tRNA-Leu 4117535..4117619 Bordetella bronchiseptica RB50 3131247 BBt43 tRNA BBt43 NC_002927.3 4135088 4135177 D tRNA-Ser 4135088..4135177 Bordetella bronchiseptica RB50 3131216 BBt44 tRNA BBt44 NC_002927.3 4194126 4194201 D tRNA-Gly 4194126..4194201 Bordetella bronchiseptica RB50 3131230 BBt45 tRNA BBt45 NC_002927.3 4217055 4217130 D tRNA-Gly 4217055..4217130 Bordetella bronchiseptica RB50 3131251 BBt46 tRNA BBt46 NC_002927.3 4217191 4217264 D tRNA-Cys 4217191..4217264 Bordetella bronchiseptica RB50 3131271 BBt47 tRNA BBt47 NC_002927.3 4410311 4410386 R tRNA-Lys complement(4410311..4410386) Bordetella bronchiseptica RB50 3131243 BBt48 tRNA BBt48 NC_002927.3 4429396 4429471 R tRNA-Lys complement(4429396..4429471) Bordetella bronchiseptica RB50 3131233 BBt49 tRNA BBt49 NC_002927.3 4484704 4484779 R tRNA-Ala complement(4484704..4484779) Bordetella bronchiseptica RB50 3131224 BBt50 tRNA BBt50 NC_002927.3 4484800 4484876 R tRNA-Ile complement(4484800..4484876) Bordetella bronchiseptica RB50 3131223 BBt51 tRNA BBt51 NC_002927.3 4551824 4551898 R tRNA-Val complement(4551824..4551898) Bordetella bronchiseptica RB50 3131213 BBt52 tRNA BBt52 NC_002927.3 4614947 4615037 R tRNA-Ser complement(4614947..4615037) Bordetella bronchiseptica RB50 3131210 BBt53 tRNA BBt53 NC_002927.3 4878900 4878974 R tRNA-Arg complement(4878900..4878974) Bordetella bronchiseptica RB50 3131257 BBt54 tRNA BBt54 NC_002927.3 5183947 5184022 D tRNA-Thr 5183947..5184022 Bordetella bronchiseptica RB50 3131226 BBt55 tRNA BBt55 NC_002927.3 5210499 5210574 D tRNA-Asn 5210499..5210574 Bordetella bronchiseptica RB50 3131225 BBr01 rRNA BBr01 NC_002927.3 1972922 1974453 D 16S ribosomal RNA 1972922..1974453 Bordetella bronchiseptica RB50 3131264 BBr02 rRNA BBr02 NC_002927.3 1975046 1977927 D 23S ribosomal RNA 1975046..1977927 Bordetella bronchiseptica RB50 3131262 BBr03 rRNA BBr03 NC_002927.3 1978102 1978216 D 5S ribosomal RNA 1978102..1978216 Bordetella bronchiseptica RB50 3131261 BBr04 rRNA BBr04 NC_002927.3 3617172 3617286 R 5S ribosomal RNA complement(3617172..3617286) Bordetella bronchiseptica RB50 3131260 BBr05 rRNA BBr05 NC_002927.3 3617461 3620342 R 23S ribosomal RNA complement(3617461..3620342) Bordetella bronchiseptica RB50 3131238 BBr06 rRNA BBr06 NC_002927.3 3620935 3622466 R 16S ribosomal RNA complement(3620935..3622466) Bordetella bronchiseptica RB50 3131255 BBr07 rRNA BBr07 NC_002927.3 4481211 4481325 R 5S ribosomal RNA complement(4481211..4481325) Bordetella bronchiseptica RB50 3131217 BBr08 rRNA BBr08 NC_002927.3 4481500 4484381 R 23S ribosomal RNA complement(4481500..4484381) Bordetella bronchiseptica RB50 3131219 BBr09 rRNA BBr09 NC_002927.3 4484974 4486505 R 16S ribosomal RNA complement(4484974..4486505) Bordetella bronchiseptica RB50 3131222