-- dump date 20140619_003827 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 257311000001 SEQ_END SEQ_END NC_002928.3 4773551 4773551 DR NC_002928.3; contig end 4773551..4773551 Bordetella parapertussis 12822 NP_882367.1 CDS gidA NC_002928.3 1 1920 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1..1920 Bordetella parapertussis 12822 1666999 NP_882368.1 CDS gidB NC_002928.3 1917 2609 D ortholog of Bordetella pertussis (BX470248) BP0002; Similar to Pseudomonas putida glucose inhibited division protein B GidB SWALL:GIDB_PSEPU (SWALL:P25757) (216 aa) fasta scores: E(): 1.5e-24, 42.59% id in 216 aa, and to Escherichia coli glucose inhibited division protein B GidB or B3740 or Z5240 or Ecs4682 SWALL:GIDB_ECOLI (SWALL:P17113) (207 aa) fasta scores: E(): 1.6e-12, 39% id in 200 aa; glucose inhibited division protein B 1917..2609 Bordetella parapertussis 12822 1667998 NP_882369.1 CDS parA NC_002928.3 2606 3403 D ortholog of Bordetella pertussis (BX470248) BP0003; Similar to Caulobacter crescentus chromosome partitioning protein ParA or Cc3753 SWALL:PARA_CAUCR (SWALL:O05189) (267 aa) fasta scores: E(): 9.6e-46, 49.41% id in 255 aa, and to Bacillus subtilis sporulation initiation inhibitor protein Soj SWALL:SOJ_BACSU (SWALL:P37522) (253 aa) fasta scores: E(): 1.3e-43, 48.98% id in 247 aa; ParA family protein 2606..3403 Bordetella parapertussis 12822 1665619 NP_882370.1 CDS BPP0004 NC_002928.3 3410 4216 D ortholog of Bordetella pertussis (BX470248) BP0004; Similar to Caulobacter crescentus acetyltransferase, GnaT family Cc2209 SWALL:Q9A685 (EMBL:AE005892) (207 aa) fasta scores: E(): 1.5e-11, 34.63% id in 205 aa, and to Rhizobium meliloti acetyltransferase R02624 or Smc02449 SWALL:Q92MJ2 (EMBL:AL591791) (308 aa) fasta scores: E(): 5.5e-10, 31.42% id in 245 aa; GNAT family acetyltransferase 3410..4216 Bordetella parapertussis 12822 1668746 NP_882371.1 CDS parB NC_002928.3 4260 5177 D ortholog of Bordetella pertussis (BX470248) BP0005; Similar to Pseudomonas putida probable chromosome partitioning protein ParB SWALL:PARB_PSEPU (SWALL:P31857) (290 aa) fasta scores: E(): 1.3e-40, 48.81% id in 295 aa; chromosome partitioning protein ParB 4260..5177 Bordetella parapertussis 12822 1665579 NP_882372.1 CDS ansB NC_002928.3 5170 6171 D ortholog of Bordetella pertussis (BX470248) BP0006; Similar to Escherichia coli L-asparaginase II precursor AnsB or B2957 SWALL:ASG2_ECOLI (SWALL:P00805) (348 aa) fasta scores: E(): 2.7e-44, 45.92% id in 331 aa; L-asparaginase II precursor 5170..6171 Bordetella parapertussis 12822 1665749 NP_882373.1 CDS tuf NC_002928.3 6767 7957 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 6767..7957 Bordetella parapertussis 12822 1666224 NP_882374.1 CDS secE NC_002928.3 8196 8576 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 8196..8576 Bordetella parapertussis 12822 1666622 NP_882375.1 CDS nusG NC_002928.3 8586 9119 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 8586..9119 Bordetella parapertussis 12822 1664874 NP_882376.1 CDS rplK NC_002928.3 9183 9614 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 9183..9614 Bordetella parapertussis 12822 1664691 NP_882377.1 CDS rplA NC_002928.3 9617 10315 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 9617..10315 Bordetella parapertussis 12822 1668090 NP_882378.1 CDS rplJ NC_002928.3 10558 11082 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 10558..11082 Bordetella parapertussis 12822 1665810 NP_882379.1 CDS rplL NC_002928.3 11164 11547 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 11164..11547 Bordetella parapertussis 12822 1665599 NP_882380.1 CDS rpoB NC_002928.3 11683 15819 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 11683..15819 Bordetella parapertussis 12822 1667822 NP_882381.1 CDS rpoC NC_002928.3 15819 20063 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 15819..20063 Bordetella parapertussis 12822 1665217 NP_882382.1 CDS BPP0016 NC_002928.3 20172 20576 R ortholog of Bordetella pertussis (BX470248) BP0017; no significant database matches; lipoprotein complement(20172..20576) Bordetella parapertussis 12822 1667289 NP_882383.1 CDS BPP0017 NC_002928.3 20817 22043 D ortholog of Bordetella pertussis (BX470248) BP0018; no significant database matches; hypothetical protein 20817..22043 Bordetella parapertussis 12822 1667290 NP_882384.1 CDS BPP0019 NC_002928.3 24353 25459 R ortholog of Bordetella pertussis (BX470248) BP0020; Similar to Caulobacter crescentus peptidoglycan binding domain protein Cc3326 SWALL:Q9A378 (EMBL:AE005994) (457 aa) fasta scores: E(): 2.4e-23, 33.8% id in 355 aa; peptidoglycan binding protein complement(24353..25459) Bordetella parapertussis 12822 1664668 NP_882385.1 CDS BPP0020 NC_002928.3 25477 26211 R ortholog of Bordetella pertussis (BX470248) BP0021; Similar to Caulobacter crescentus DNA-binding response regulator Cc3325 SWALL:Q9A379 (EMBL:AE005994) (236 aa) fasta scores: E(): 1.1e-37, 47.82% id in 230 aa, and to Pseudomonas aeruginosa probable two-component response regulator Pa4032 SWALL:Q9HWZ5 (EMBL:AE004820) (238 aa) fasta scores: E(): 4.6e-28, 41.27% id in 235 aa; two-component response regulator complement(25477..26211) Bordetella parapertussis 12822 1664968 NP_882386.1 CDS BPP0021 NC_002928.3 26469 27281 D ortholog of Bordetella pertussis (BX470248) BP0022; Similar to Zymomonas mobilis aerobic respiration control protein ArcA SWALL:Q9X3W0 (EMBL:AF088896) (241 aa) fasta scores: E(): 7.9e-10, 31.06% id in 235 aa, and to Rhodobacter sphaeroides DmsR SWALL:O32479 (EMBL:D89075) (232 aa) fasta scores: E(): 2.7e-10, 28.81% id in 236 aa; two-component response regulator 26469..27281 Bordetella parapertussis 12822 1665029 NP_882387.1 CDS BPP0022 NC_002928.3 27311 28246 R Similar to Rhizobium meliloti histidine-rich transporter transmembrane protein R01996 or Smc04167 SWALL:Q92P03 (EMBL:AL591789) (321 aa) fasta scores: E(): 6.7e-57, 55.41% id in 314 aa, and to Bradyrhizobium japonicum inner membrane protein SWALL:Q9RH59 (EMBL:AF065159) (344 aa) fasta scores: E(): 3.3e-44, 46.23% id in 305 aa; metal transporter complement(27311..28246) Bordetella parapertussis 12822 1666028 NP_882388.1 CDS BPP0023 NC_002928.3 28252 28527 R Similar to Serratia marcescens hypothetical 10.1 kDa protein in bioA 5'region SWALL:YOHL_SERMA (SWALL:P55757) (91 aa) fasta scores: E(): 7.7e-13, 43.95% id in 91 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1298 SWALL:Q9I446 (EMBL:AE004559) (91 aa) fasta scores: E(): 1.5e-11, 42.85% id in 91 aa; hypothetical protein complement(28252..28527) Bordetella parapertussis 12822 1666859 NP_882389.1 CDS rpsL NC_002928.3 29104 29481 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 29104..29481 Bordetella parapertussis 12822 1664828 NP_882390.1 CDS rpsG NC_002928.3 29645 30115 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 29645..30115 Bordetella parapertussis 12822 1667593 NP_882391.1 CDS fusA NC_002928.3 30133 32235 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 30133..32235 Bordetella parapertussis 12822 1667356 NP_882392.1 CDS tuf NC_002928.3 32312 33502 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 32312..33502 Bordetella parapertussis 12822 1665483 NP_882393.1 CDS rpsJ NC_002928.3 33566 33877 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 33566..33877 Bordetella parapertussis 12822 1665822 NP_882394.2 CDS rplC NC_002928.3 34229 34918 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 34229..34918 Bordetella parapertussis 12822 1665556 NP_882395.1 CDS rplD NC_002928.3 34923 35540 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 34923..35540 Bordetella parapertussis 12822 1664942 NP_882396.1 CDS rplW NC_002928.3 35537 35833 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 35537..35833 Bordetella parapertussis 12822 1664943 NP_882397.1 CDS rplB NC_002928.3 35834 36661 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 35834..36661 Bordetella parapertussis 12822 1665798 NP_882398.1 CDS rpsS NC_002928.3 36674 36949 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 36674..36949 Bordetella parapertussis 12822 1666621 NP_882399.1 CDS rplV NC_002928.3 36953 37282 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 36953..37282 Bordetella parapertussis 12822 1666491 NP_882400.1 CDS rpsC NC_002928.3 37292 38083 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 37292..38083 Bordetella parapertussis 12822 1666988 NP_882401.1 CDS rplP NC_002928.3 38086 38502 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 38086..38502 Bordetella parapertussis 12822 1667434 NP_882402.1 CDS rpmC NC_002928.3 38513 38704 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 38513..38704 Bordetella parapertussis 12822 1668256 NP_882403.1 CDS rpsQ NC_002928.3 38706 38987 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 38706..38987 Bordetella parapertussis 12822 1667678 NP_882404.1 CDS BPP0040 NC_002928.3 40103 41530 R ortholog of Bordetella pertussis (BX470248) BP3624; Similar to Escherichia coli O157:H7 succinate-semialdehyde dehydrogenase, NADP-dependent activity GabD or z3959 or ecs3522 SWALL:Q8X950 (EMBL:AE005495) (482 aa) fasta scores: E(): 3.7e-75, 43.34% id in 473 aa, and to Acinetobacter sp., and Acinetobacter sp. NCIMB9871 6-oxohexanoate dehydrogenase ChnE SWALL:Q9R2F4 (EMBL:AB006902) (477 aa) fasta scores: E(): 6e-117, 60.75% id in 474 aa; aldehyde dehydrogenase complement(40103..41530) Bordetella parapertussis 12822 1666733 NP_882405.1 CDS rplN NC_002928.3 42425 42793 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 42425..42793 Bordetella parapertussis 12822 1667138 NP_882406.1 CDS rplX NC_002928.3 42804 43124 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 42804..43124 Bordetella parapertussis 12822 1667255 NP_882407.1 CDS rplE NC_002928.3 43137 43676 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 43137..43676 Bordetella parapertussis 12822 1667732 NP_882408.1 CDS rpsN NC_002928.3 43689 43994 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 43689..43994 Bordetella parapertussis 12822 1667841 NP_882409.1 CDS rpsH NC_002928.3 44005 44400 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 44005..44400 Bordetella parapertussis 12822 1667879 NP_882410.1 CDS rplF NC_002928.3 44411 44944 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 44411..44944 Bordetella parapertussis 12822 1666806 NP_882411.1 CDS rplR NC_002928.3 44966 45328 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 44966..45328 Bordetella parapertussis 12822 1665239 NP_882412.1 CDS rpsE NC_002928.3 45344 45868 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 45344..45868 Bordetella parapertussis 12822 1666278 NP_882413.1 CDS rpmD NC_002928.3 45872 46057 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 45872..46057 Bordetella parapertussis 12822 1667450 NP_882414.1 CDS rplO NC_002928.3 46067 46507 D late assembly protein; 50S ribosomal protein L15 46067..46507 Bordetella parapertussis 12822 1667451 NP_882415.1 CDS secY NC_002928.3 46522 47847 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 46522..47847 Bordetella parapertussis 12822 1667789 NP_882416.1 CDS infA NC_002928.3 47857 48075 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 47857..48075 Bordetella parapertussis 12822 1665721 NP_882417.1 CDS rpmJ NC_002928.3 48110 48223 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 48110..48223 Bordetella parapertussis 12822 1667560 NP_882418.1 CDS rpsM NC_002928.3 48265 48630 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 48265..48630 Bordetella parapertussis 12822 1665620 NP_882419.1 CDS rpsK NC_002928.3 48646 49047 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 48646..49047 Bordetella parapertussis 12822 1665647 NP_882420.1 CDS rpsD NC_002928.3 49059 49682 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 49059..49682 Bordetella parapertussis 12822 1666912 NP_882421.1 CDS rpoA NC_002928.3 49897 50883 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 49897..50883 Bordetella parapertussis 12822 1668966 NP_882422.1 CDS rplQ NC_002928.3 51042 51437 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 51042..51437 Bordetella parapertussis 12822 1668968 NP_882423.1 CDS BPP0059 NC_002928.3 51566 52003 R ortholog of Bordetella pertussis (BX470248) BP3644; Similar to Halobacterium sp. histidine triad protein Hit1 or vng2186G SWALL:Q9HNA0 (EMBL:AE005106) (142 aa) fasta scores: E(): 6.5e-11, 38.73% id in 111 aa, and to Salmonella typhimurium diadenosine tetraphosphate Stm3167 SWALL:Q8ZM04 (EMBL:AE008845) (151 aa) fasta scores: E(): 1.2e-10, 34.74% id in 118 aa; histidine triad protein complement(51566..52003) Bordetella parapertussis 12822 1665879 NP_882424.1 CDS cutA NC_002928.3 52110 52451 D ortholog of Bordetella pertussis (BX470248) BP3645; Similar to Escherichia coli, and Escherichia coli O157:H7 periplasmic divalent cation tolerance protein CutA or CycY or CutA1 or b4137 or z5742 or ecs5118 SWALL:CUTA_ECOLI (SWALL:P36654) (112 aa) fasta scores: E(): 1.1e-10, 38.54% id in 96 aa, and to Methanopyrus kandleri uncharacterized protein implicated in tolerance to divalent cations CutA or mk1492 SWALL:AAM02705 (EMBL:AE010440) (102 aa) fasta scores: E(): 1.7e-15, 50% id in 100 aa; divalent cation tolerance protein 52110..52451 Bordetella parapertussis 12822 1665880 NP_882425.1 CDS BPP0061 NC_002928.3 52462 54399 D ortholog of Bordetella pertussis (BX470248) BP3646; Similar to Pseudomonas aeruginosa thiol:disulfide interchange protein precursor DsbB1 or DipZ or pa4845 SWALL:DSD1_PSEAE (SWALL:Q9HUW5) (591 aa) fasta scores: E(): 4e-53, 41.54% id in 609 aa, and to Ralstonia solanacearum thiol:disulfide interchange protein dsbd precursor DsbD or rsc2990 or rs01128 SWALL:Q8XV41 (EMBL:AL646073) (608 aa) fasta scores: E(): 2.6e-76, 50.48% id in 618 aa; thiol:disulfide interchange protein 52462..54399 Bordetella parapertussis 12822 1665057 NP_882426.1 CDS BPP0062 NC_002928.3 54440 55477 D ortholog of Bordetella pertussis (BX470248) BP3647; Similar to Bacillus halodurans hypothetical protein Bh1741 SWALL:Q9KC33 (EMBL:AP001513) (306 aa) fasta scores: E(): 9.7e-23, 33.21% id in 283 aa, and to Listeria monocytogenes hypothetical protein Lmo0495 SWALL:Q8Y9N0 (EMBL:AL591975) (319 aa) fasta scores: E(): 2.8e-23, 30.58% id in 291 aa; hypothetical protein 54440..55477 Bordetella parapertussis 12822 1668967 NP_882427.1 CDS hemB NC_002928.3 55474 56490 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(55474..56490) Bordetella parapertussis 12822 1664582 NP_882428.1 CDS engB NC_002928.3 56487 57110 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(56487..57110) Bordetella parapertussis 12822 1664797 NP_882429.1 CDS BPP0065 NC_002928.3 57334 58035 D ortholog of Bordetella pertussis (BX470248) BP3650; Similar to Azotobacter vinelandii cytochrome C4 precursor CycA SWALL:CYC4_AZOVI (SWALL:P43302) (210 aa) fasta scores: E(): 5.7e-18, 40.2% id in 194 aa, and to Ralstonia solanacearum probable oxidoreductase cytochrome C-type signal peptide protein rsc2987 or rs01225 SWALL:Q8XV44 (EMBL:AL646073) (219 aa) fasta scores: E(): 4.5e-20, 45.92% id in 233 aa; cytochrome C precursor 57334..58035 Bordetella parapertussis 12822 1664798 NP_882430.1 CDS BPP0066 NC_002928.3 58153 60249 D ortholog of Bordetella pertussis (BX470248) BP3651; Similar to Ralstonia solanacearum cytochrome c-type biogenesis transmembrane protein rsc2986 or rs01235 SWALL:Q8XV45 (EMBL:AL646073) (700 aa) fasta scores: E(): 9.2e-84, 46.53% id in 692 aa, and to Neisseria meningitidis cytochrome c-type biogenesis protein, nmb1804 SWALL:Q9JY04 (EMBL:AE002530) (671 aa) fasta scores: E(): 2.6e-47, 37.98% id in 695 aa; hypothetical protein 58153..60249 Bordetella parapertussis 12822 1668747 NP_882431.1 CDS BPP0067 NC_002928.3 60259 61593 D ortholog of Bordetella pertussis (BX470248) BP3652; Similar to Neisseria meningitidis cytochrome c-type biogenesis protein, nmb1803 SWALL:Q9JY05 (EMBL:AE002530) (395 aa) fasta scores: E(): 1.3e-42, 48.81% id in 422 aa; cytochrome c asssembly protein 60259..61593 Bordetella parapertussis 12822 1668748 NP_882432.1 CDS lysA NC_002928.3 61664 62953 R ortholog of Bordetella pertussis (BX470248) BP3653; Similar to Pseudomonas aeruginosa diaminopimelate decarboxylase LysA or pa5277 SWALL:DCDA_PSEAE (SWALL:P19572) (415 aa) fasta scores: E(): 2.4e-93, 62.8% id in 414 aa, and to Vibrio cholerae diaminopimelate decarboxylase LysA or vc0125 SWALL:DCDA_VIBCH (SWALL:Q9KVL7) (417 aa) fasta scores: E(): 1.7e-92, 59.28% id in 420 aa; diaminopimelate decarboxylase complement(61664..62953) Bordetella parapertussis 12822 1668749 NP_882433.1 CDS cyaY NC_002928.3 63167 63496 D ortholog of Bordetella pertussis (BX470248) BP3654; Similar to Escherichia coli CyaY protein or b3807 SWALL:CYAY_ECOLI (SWALL:P27838) (106 aa) fasta scores: E(): 1.1e-12, 37.03% id in 108 aa, and to Ralstonia solanacearum CyaY protein or rsc2977 or rs01320 SWALL:CYAY_RALSO (SWALL:Q8XV54) (113 aa) fasta scores: E(): 5.4e-17, 50.46% id in 107 aa; hypothetical protein 63167..63496 Bordetella parapertussis 12822 1668750 NP_882434.1 CDS BPP0070 NC_002928.3 63553 65997 R ortholog of Bordetella pertussis (BX470248) BP3655; Similar to Escherichia coli penicillin-binding protein 1A MrcA or PonA or b3396 SWALL:PBPA_ECOLI (SWALL:P02918) (850 aa) fasta scores: E(): 2.2e-84, 37.45% id in 841 aa, and to Ralstonia solanacearum probable penicillin-binding 1 MrcA or rsc2976 or rs01357 SWALL:Q8XV55 (EMBL:AL646073) (801 aa) fasta scores: E(): 1.5e-161, 53.19% id in 782 aa; penicillin-binding protein 1A complement(63553..65997) Bordetella parapertussis 12822 1668751 NP_882435.1 CDS aroK NC_002928.3 66111 66746 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 66111..66746 Bordetella parapertussis 12822 1668753 NP_882436.1 CDS aroB NC_002928.3 66746 67822 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 66746..67822 Bordetella parapertussis 12822 1668754 NP_882437.1 CDS BPP0073 NC_002928.3 67819 68973 D dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 67819..68973 Bordetella parapertussis 12822 1668755 NP_882438.1 CDS uvrA NC_002928.3 69864 72722 R ortholog of Bordetella pertussis (BX470248) BP3660; Similar to Haemophilus influenzae excinuclease ABC subunit A UvrA or hi0249 SWALL:UVRA_HAEIN (SWALL:P44410) (943 aa) fasta scores: E(): 0, 64.91% id in 949 aa, and to Escherichia coli excinuclease ABC subunit A UvrA or DinE or b4058 SWALL:UVRA_ECOLI (SWALL:P07671) (940 aa) fasta scores: E(): 0, 65.12% id in 949 aa; excinuclease ABC subunit A complement(69864..72722) Bordetella parapertussis 12822 1668757 NP_882439.1 CDS BPP0076 NC_002928.3 72878 74062 D ortholog of Bordetella pertussis (BX470248) BP3661; Similar to Escherichia coli tetracycline resistance protein, class c TetA SWALL:TCR3_ECOLI (SWALL:P02981) (396 aa) fasta scores: E(): 8.8e-11, 27.04% id in 392 aa, and to Ralstonia solanacearum multidrug-efflux transporter transmembrane protein rsc0421 or rs03389 SWALL:Q8Y2B5 (EMBL:AL646059) (387 aa) fasta scores: E(): 6.1e-67, 52.48% id in 383 aa; transport protein 72878..74062 Bordetella parapertussis 12822 1668759 NP_882440.1 CDS ssb NC_002928.3 74295 74783 D ortholog of Bordetella pertussis (BX470248) BP3662; Similar to Proteus mirabilis single-strand binding protein Ssb SWALL:SSB_PROMI (SWALL:P28046) (173 aa) fasta scores: E(): 1.9e-26, 56.47% id in 170 aa, and to Serratia marcescens single-strand binding protein Ssb SWALL:SSB_SERMA (SWALL:P25762) (175 aa) fasta scores: E(): 1.2e-24, 55.49% id in 173 aa; single-strand binding protein 74295..74783 Bordetella parapertussis 12822 1668760 NP_882441.1 CDS BPP0078 NC_002928.3 74842 76062 R transposase for IS1001 element; transposase complement(74842..76062) Bordetella parapertussis 12822 1668761 NP_882442.1 CDS bfrC NC_002928.3 76330 78444 D ortholog of Bordetella pertussis (BX470248) BP3663; Similar to Bordetella bronchiseptica unidentified ferric siderophore receptor BfrC SWALL:P94274 (EMBL:U79564) (724 aa) fasta scores: E(): 0, 99.43% id in 704 aa; ferric siderophore receptor 76330..78444 Bordetella parapertussis 12822 1668762 NP_882443.1 CDS BPP0080 NC_002928.3 78581 79084 D ortholog of Bordetella pertussis (BX470248) BP3664; Similar to Pseudomonas aeruginosa hypothetical protein Pa4095 pa4095 SWALL:Q9HWT3 (EMBL:AE004825) (177 aa) fasta scores: E(): 1.4e-14, 32.23% id in 152 aa, and to Alcaligenes sp 2,4'-dihydroxyacetophenone dioxygenase Dad SWALL:Q9REI7 (EMBL:AJ133820) (176 aa) fasta scores: E(): 2.5e-12, 31.69% id in 142 aa; hypothetical protein 78581..79084 Bordetella parapertussis 12822 1664653 NP_882444.1 CDS BPP0081 NC_002928.3 79103 79882 D ortholog of Bordetella pertussis (BX470248) BP3665; Similar to Erwinia chrysanthemi AcsB SWALL:Q93AU1 (EMBL:AF416739) (258 aa) fasta scores: E(): 1.9e-18, 32.01% id in 253 aa, and to Escherichia coli 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH or HpaI SWALL:HPAI_ECOLI (SWALL:Q47098) (262 aa) fasta scores: E(): 7.6e-17, 27.55% id in 254 aa; aldolase 79103..79882 Bordetella parapertussis 12822 1668770 NP_882445.1 CDS BPP0082 NC_002928.3 79911 80927 D ortholog of Bordetella pertussis (BX470248) BP3666; Similar to Pseudomonas sp. hypothetical 35.9 kDa protein in tcbD-tcbE intergenic region precursor SWALL:YTCB_PSESQ (SWALL:P27103) (336 aa) fasta scores: E(): 1.1e-28, 35.31% id in 320 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.2e-26, 39.09% id in 266 aa; hypothetical protein 79911..80927 Bordetella parapertussis 12822 1668771 NP_882446.1 CDS BPP0083 NC_002928.3 80981 81775 D ortholog of Bordetella pertussis (BX470248) BP3667; Similar to Deinococcus radiodurans transcriptional regulator, GntR-family dra0211 SWALL:Q9RYU6 (EMBL:AE001863) (279 aa) fasta scores: E(): 3.1e-07, 28.38% id in 229 aa, and to Streptomyces coelicolor GntR-family regulatory protein sco6974 or sc6f7.27C SWALL:Q9KZB5 (EMBL:AL353870) (261 aa) fasta scores: E(): 3.9e-05, 28% id in 250 aa; GntR family transcriptional regulator 80981..81775 Bordetella parapertussis 12822 1668772 NP_882447.1 CDS BPP0084 NC_002928.3 81772 82713 R ortholog of Bordetella pertussis (BX470248) BP3668; Similar to Ralstonia solanacearum probable transcription regulator protein rsc0144 or rs01014 SWALL:Q8Y337 (EMBL:AL646057) (321 aa) fasta scores: E(): 6.5e-32, 38.26% id in 311 aa, and to Burkholderia cepacia DntR SWALL:Q8VUD7 (EMBL:AF169302) (301 aa) fasta scores: E(): 3.8e-30, 34.11% id in 299 aa; transcriptional regulator complement(81772..82713) Bordetella parapertussis 12822 1668773 NP_882448.1 CDS BPP0085 NC_002928.3 82993 84483 D Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase 82993..84483 Bordetella parapertussis 12822 1668774 NP_882449.1 CDS BPP0086 NC_002928.3 84522 85412 D ortholog of Bordetella pertussis (BX470248) BP3670; Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 4.8e-28, 37.14% id in 280 aa, and to Agrobacterium tumefaciens hypothetical protein atu4727 or agr_l_312 SWALL:AAK88723 (EMBL:AE009401) (329 aa) fasta scores: E(): 8.6e-27, 39.09% id in 220 aa; hypothetical protein 84522..85412 Bordetella parapertussis 12822 1668775 NP_882450.1 CDS BPP0087 NC_002928.3 85565 86710 D ortholog of Bordetella pertussis (BX470248) BP3671; Similar to Xylella fastidiosa hypothetical protein Xf1470 SWALL:Q9PDA9 (EMBL:AE003977) (376 aa) fasta scores: E(): 6.3e-28, 43.31% id in 374 aa, and to Rhizobium meliloti glycosyltransferase r01229 or smc01790 SWALL:Q92QS8 (EMBL:AL591786) (414 aa) fasta scores: E(): 3.4e-18, 30.12% id in 395 aa; glycosyl transferase family protein 85565..86710 Bordetella parapertussis 12822 1668776 NP_882451.1 CDS BPP0088 NC_002928.3 86717 87535 D ortholog of Bordetella pertussis (BX470248) BP3672; Weakly similar to Escherichia coli hypothetical protein YrbL or b3207 SWALL:YRBL_ECOLI (SWALL:P46021) (210 aa) fasta scores: E(): 0.031, 25.88% id in 197 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein YrbL or stm3325 or sty3504 SWALL:Q8XFU2 (EMBL:AE008853) (210 aa) fasta scores: E(): 0.049, 25.47% id in 212 aa; hypothetical protein 86717..87535 Bordetella parapertussis 12822 1668777 NP_882452.1 CDS BPP0089 NC_002928.3 87695 88666 D ortholog of Bordetella pertussis (BX470248) BP3673; Similar to Brucella melitensis transcriptional regulatory protein, LysR-family bmei0116 SWALL:Q8YJG7 (EMBL:AE009454) (308 aa) fasta scores: E(): 7.6e-27, 29.73% id in 306 aa, and to Frateuria sp. ANA-18 regulator of cat2 gene cluster SWALL:Q9Z9Y2 (EMBL:AB009373) (295 aa) fasta scores: E(): 6.1e-11, 25.33% id in 296 aa; LysR family regulatory protein 87695..88666 Bordetella parapertussis 12822 1668778 NP_882453.1 CDS BPP0090 NC_002928.3 88692 89693 D ortholog of Bordetella pertussis (BX470248) BP3674; Similar to Escherichia coli taurine-binding periplasmic protein precursor TauA or SsiA or b0365 SWALL:TAUA_ECOLI (SWALL:Q47537) (320 aa) fasta scores: E(): 4.5e-18, 31.71% id in 309 aa, and to Rhizobium meliloti taurine uptake ABC transporter periplasmic solute-binding protein TauA or rb0965 or smb21526 SWALL:Q926G5 (EMBL:AL603645) (339 aa) fasta scores: E(): 8e-17, 30.51% id in 331 aa; periplasmic solute-binding protein 88692..89693 Bordetella parapertussis 12822 1668779 NP_882454.1 CDS BPP0091 NC_002928.3 89757 90527 D ortholog of Bordetella pertussis (BX470248) BP3675; Similar to Escherichia coli taurine transport system permease TauC or SsiC or b0367 SWALL:TAUC_ECOLI (SWALL:Q47539) (275 aa) fasta scores: E(): 2.1e-34, 37.34% id in 241 aa, and to Methanopyrus kandleri homolog of ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, permease component mk0602 SWALL:AAM01817 (EMBL:AE010353) (251 aa) fasta scores: E(): 7.1e-38, 40.23% id in 251 aa; ABC transporter permease 89757..90527 Bordetella parapertussis 12822 1668780 NP_882455.1 CDS BPP0092 NC_002928.3 90515 91306 D ortholog of Bordetella pertussis (BX470248) BP3676; Similar to Rhizobium loti ATP-binding protein of ABC transporter mll1253 SWALL:Q98KZ4 (EMBL:AP002997) (267 aa) fasta scores: E(): 6.8e-43, 46.59% id in 264 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase atu0159 or agr_c_259 SWALL:AAL41183 (EMBL:AE008990) (261 aa) fasta scores: E(): 1.9e-42, 49.6% id in 250 aa; ABC transporter ATP-binding protein 90515..91306 Bordetella parapertussis 12822 1668781 NP_882456.1 CDS BPP0093 NC_002928.3 91334 92650 D ortholog of Bordetella pertussis (BX470248) BP3677; Similar to Pseudomonas aeruginosa hypothetical protein Pa4186 SWALL:Q9HWJ5 (EMBL:AE004835) (439 aa) fasta scores: E(): 2.6e-52, 37.03% id in 432 aa, and to Ralstonia solanacearum oxidoreductase rsc2113 or rs01491 SWALL:Q8XXK0 (EMBL:AL646068) (387 aa) fasta scores: E(): 1.5e-46, 37.53% id in 381 aa; hypothetical protein 91334..92650 Bordetella parapertussis 12822 1668782 NP_882457.1 CDS BPP0094 NC_002928.3 92787 92975 R ortholog of Bordetella pertussis (BX470248) BP3678; No significant database matches.; hypothetical protein complement(92787..92975) Bordetella parapertussis 12822 1668783 NP_882458.1 CDS BPP0095 NC_002928.3 92984 93628 R ortholog of Bordetella pertussis (BX470248) BP3679; Similar to Ralstonia solanacearum transcription regulator protein rsc0472 or rs04423 SWALL:Q8Y264 (EMBL:AL646059) (213 aa) fasta scores: E(): 8e-34, 51% id in 200 aa, and to Agrobacterium tumefaciens transcriptional regulator, TetR-family atu5291 or agr_pat_419 SWALL:AAK90667 (EMBL:AE008951) (221 aa) fasta scores: E(): 6.7e-13, 33.33% id in 192 aa; TetR family transcriptional regulator complement(92984..93628) Bordetella parapertussis 12822 1668784 NP_882459.1 CDS glcB NC_002928.3 93664 95841 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(93664..95841) Bordetella parapertussis 12822 1668785 NP_882460.1 CDS glcC NC_002928.3 96085 96849 D ortholog of Bordetella pertussis (BX470248) BP3681; Similar to Escherichia coli glc operon transcriptional activator GlcC or b2980 SWALL:GLCC_ECOLI (SWALL:P52072) (254 aa) fasta scores: E(): 2e-52, 63.82% id in 246 aa, and to Pseudomonas aeruginosa transcriptional regulator GlcC or pa5356 SWALL:Q9HTK2 (EMBL:AE004947) (251 aa) fasta scores: E(): 1.8e-58, 66.53% id in 248 aa; DNA-binding transcriptional regulator GlcC 96085..96849 Bordetella parapertussis 12822 1668786 NP_882461.1 CDS BPP0098 NC_002928.3 96846 97973 R ortholog of Bordetella pertussis (BX470248) BP3682; Similar to Bacillus stearothermophilus L-lysine dehydrogenase LysDH SWALL:Q9AJC6 (EMBL:AB052732) (385 aa) fasta scores: E(): 1.2e-14, 28.92% id in 363 aa, and to Agrobacterium tumefaciens dehydrogenase atu0946 or agr_c_1727 SWALL:AAL41960 (EMBL:AE009059) (366 aa) fasta scores: E(): 2.5e-74, 54.31% id in 359 aa; dehydrogenase complement(96846..97973) Bordetella parapertussis 12822 1668787 NP_882462.1 CDS BPP0099 NC_002928.3 98199 98585 R ortholog of Bordetella pertussis (BX470248) BP3683; No significant database matches.; hypothetical protein complement(98199..98585) Bordetella parapertussis 12822 1668788 NP_882463.1 CDS ubiA NC_002928.3 98851 99777 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(98851..99777) Bordetella parapertussis 12822 1668789 NP_882464.1 CDS BPP0101 NC_002928.3 99864 101063 R ortholog of Bordetella pertussis (BX470248) BP3685; Similar to Thermococcus profundus multiple substrate aminotransferase SWALL:Q9V2W5 (EMBL:AB027131) (417 aa) fasta scores: E(): 3.1e-62, 44.05% id in 404 aa, and to Ralstonia solanacearum probable aminotransferase rsc0985 or rs04307 SWALL:Q8Y0Q8 (EMBL:AL646062) (406 aa) fasta scores: E(): 1e-88, 58.19% id in 409 aa; aminotransferase complement(99864..101063) Bordetella parapertussis 12822 1668790 NP_882465.1 CDS BPP0102 NC_002928.3 101202 101696 D ortholog of Bordetella pertussis (BX470248) BP3686; Similar to Xylella fastidiosa hypothetical protein Xf1230 SWALL:Q9PDZ8 (EMBL:AE003957) (162 aa) fasta scores: E(): 3.6e-38, 61.03% id in 154 aa, and to Rhizobium loti hypothetical protein Mll2226 SWALL:Q98IV8 (EMBL:AP002999) (165 aa) fasta scores: E(): 1.6e-36, 59.23% id in 157 aa; hypothetical protein 101202..101696 Bordetella parapertussis 12822 1668794 NP_882466.1 CDS BPP0103 NC_002928.3 101984 102883 D ortholog of Bordetella pertussis (BX470248) BP3687; Similar to Yersinia enterocolitica dihydrodipicolinate synthetase DhdpS SWALL:Q93IH0 (EMBL:AJ345001) (293 aa) fasta scores: E(): 3.3e-22, 33.68% id in 282 aa, and to Ralstonia solanacearum probable dihydrodipicolinate synthase-related transmembrane protein rsc0665 or rs01570 SWALL:Q8Y1M5 (EMBL:AL646060) (304 aa) fasta scores: E(): 1.2e-51, 58.94% id in 285 aa; dihydrodipicolinate synthase 101984..102883 Bordetella parapertussis 12822 1668795 NP_882467.1 CDS BPP0104 NC_002928.3 103231 109044 D ortholog of Bordetella pertussis (BX470248) BP3204; Similar to Bordetella bronchiseptica outer membrane ligand binding protein BipA SWALL:Q9APE8 (EMBL:AF304006) (1578 aa) fasta scores: E(): 2.7e-186, 45.88% id in 1445 aa, and to Escherichia coli O157:H7 adhesin EaeH or z0375 or ecs0336 SWALL:Q8X6G3 (EMBL:AE005207) (1417 aa) fasta scores: E(): 2.7e-25, 23.87% id in 1420 aa; adhesin 103231..109044 Bordetella parapertussis 12822 1668796 NP_882468.1 CDS BPP0105 NC_002928.3 109211 109987 D ortholog of Bordetella pertussis (BX470248) BP3205; Similar to Caulobacter crescentus sterol desaturase Cc1671 SWALL:Q9A7P9 (EMBL:AE005841) (274 aa) fasta scores: E(): 7.2e-16, 31.67% id in 221 aa, and to Homo sapiens lathosterol oxidase Sc5dL SWALL:SC5D_HUMAN (SWALL:O75845) (299 aa) fasta scores: E(): 2.5e-08, 31.17% id in 170 aa; desaturase 109211..109987 Bordetella parapertussis 12822 1668797 NP_882469.1 CDS BPP0106 NC_002928.3 109971 110849 D ortholog of Bordetella pertussis (BX470248) BP3207; Similar to Synechococcus vulcanus delta 9 acyl-lipid fatty acid desaturase DesC SWALL:Q9ZAP7 (EMBL:U90417) (279 aa) fasta scores: E(): 0.001, 24.7% id in 255 aa, and to Rhodococcus sp. Q15 alkane-1-monooxygenase AlkB3 SWALL:Q93DN5 (EMBL:AF388179) (383 aa) fasta scores: E(): 3.1e-05, 27.9% id in 258 aa; fatty acid desaturase 109971..110849 Bordetella parapertussis 12822 1668798 NP_882470.1 CDS BPP0107 NC_002928.3 110885 112798 D Catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; 3-oxoacyl-ACP synthase 110885..112798 Bordetella parapertussis 12822 1668799 NP_882471.1 CDS BPP0108 NC_002928.3 112795 113676 D Similar to Caulobacter crescentus hypothetical protein Cc0863 SWALL:Q9A9U8 (EMBL:AE005763) (304 aa) fasta scores: E(): 4.6e-54, 49.14% id in 291 aa; hypothetical protein 112795..113676 Bordetella parapertussis 12822 1668800 NP_882472.1 CDS BPP0109 NC_002928.3 113683 115020 R Similar to Anabaena sp amino acid transporter Alr1519 SWALL:Q8YWT1 (EMBL:AP003586) (455 aa) fasta scores: E(): 7.9e-66, 46.68% id in 422 aa; amino acid permease complement(113683..115020) Bordetella parapertussis 12822 1668801 NP_882473.1 CDS BPP0110 NC_002928.3 115017 115862 R Similar to Anabaena sp HYPOTHETICAL PROTEIN ALR1520 (219 aa) E(): 1.5e-30, 57.831% identity (58.182% ungapped) in 166 aa overlap, and to Sulfolobus solfataricus and to Sulfolobus solfataricus RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE, (161 aa) E(): 9.5e-21, 48.052% identity (49.333% ungapped) in 154 aa overlap. Orf not present in B. pertussis; methyltransferase complement(115017..115862) Bordetella parapertussis 12822 1668802 NP_882474.1 CDS BPP0111 NC_002928.3 116191 117819 D ortholog of Bordetella pertussis (BX470248) BP3209+BP0705; Similar to Ralstonia solanacearum choline dehydrogenase lipoprotein oxidoreductase beta or rsc3345 or rs02583 SWALL:Q8XU48 (EMBL:AL646074) (544 aa) fasta scores: E(): 4.3e-146, 69.96% id in 536 aa, and to Pseudomonas aeruginosa probable gmc-type oxidoreductase pa3710 SWALL:Q9HXT1 (EMBL:AE004790) (557 aa) fasta scores: E(): 2.1e-145, 69.36% id in 532 aa; dehydrogenase 116191..117819 Bordetella parapertussis 12822 1668803 NP_882475.1 CDS BPP0112 NC_002928.3 117946 119232 D ortholog of Bordetella pertussis (BX470248) BP0706; Similar to Roseateles depolymerans orf428 protein SWALL:Q9F206 (EMBL:AB028938) (428 aa) fasta scores: E(): 1.2e-91, 58.31% id in 427 aa, and to Xylella fastidiosa hypothetical protein Xf0042 SWALL:Q9PHA2 (EMBL:AE003858) (420 aa) fasta scores: E(): 3.7e-45, 53.68% id in 421 aa; hypothetical protein 117946..119232 Bordetella parapertussis 12822 1668804 NP_882476.1 CDS BPP0113 NC_002928.3 119426 119710 D ortholog of Bordetella pertussis (BX470248) BP0707; Similar to Ralstonia solanacearum hypothetical protein rsc0464 or rs04433 SWALL:Q8Y272 (EMBL:AL646059) (112 aa) fasta scores: E(): 2.7e-13, 54.9% id in 102 aa; hypothetical protein 119426..119710 Bordetella parapertussis 12822 1668805 NP_882477.1 CDS BPP0114 NC_002928.3 119711 120376 D ortholog of Bordetella pertussis (BX470248) BP0708; Similar to Ralstonia solanacearum probable transmembrane protein rsc0465 or rs04432 SWALL:Q8Y271 (EMBL:AL646059) (243 aa) fasta scores: E(): 4.6e-41, 55.3% id in 217 aa, and to Neisseria meningitidis integral membrane protein nma2020 SWALL:Q9JT22 (EMBL:AL162757) (245 aa) fasta scores: E(): 6.3e-34, 47.14% id in 210 aa; hypothetical protein 119711..120376 Bordetella parapertussis 12822 1668806 NP_882478.1 CDS aspS NC_002928.3 120417 122207 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 120417..122207 Bordetella parapertussis 12822 1668807 NP_882479.1 CDS BPP0116 NC_002928.3 122320 123180 D ortholog of Bordetella pertussis (BX470248) BP0710; Similar to Ralstonia solanacearum hypothetical protein rsc0469 or rs04427 SWALL:Q8Y267 (EMBL:AL646059) (248 aa) fasta scores: E(): 8.1e-31, 44.98% id in 289 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YbhP or b0790 or z1009 or ecs0868 SWALL:YBHP_ECOLI (SWALL:P75772) (253 aa) fasta scores: E(): 1.3e-20, 36.77% id in 291 aa; Similar to Ralstonia solanacearum hypothetical protein rsc0469 or rs04427 SWALL:Q8Y267 (EMBL:AL646059) (248 aa) fasta scores: E(): 8.1e-31, 44.98% id in 289 aa; endonuclease/exonuclease/phosphatase 122320..123180 Bordetella parapertussis 12822 1668809 NP_882480.1 CDS BPP0117 NC_002928.3 123126 124388 D ortholog of Bordetella pertussis (BX470248) BP0711; Similar to Ralstonia solanacearum hypothetical protein rsc0470 or rs04425 SWALL:Q8Y266 (EMBL:AL646059) (422 aa) fasta scores: E(): 7.1e-33, 46.47% id in 426 aa, and to Salmonella typhi phospholipase YbhO or sty0847 SWALL:Q8Z883 (EMBL:AL627268) (413 aa) fasta scores: E(): 1.1e-22, 38.26% id in 392 aa; phospholipase 123126..124388 Bordetella parapertussis 12822 1668810 NP_882481.1 CDS BPP0118 NC_002928.3 124389 125273 R ortholog of Bordetella pertussis (BX470248) BP0712; Similar to Ralstonia solanacearum probable transmembrane protein rsc2507 or rs01075 SWALL:Q8XWG7 (EMBL:AL646070) (310 aa) fasta scores: E(): 1.3e-53, 53.89% id in 295 aa, and to Vibrio cholerae hypothetical protein Vca0090 SWALL:Q9KN75 (EMBL:AE004352) (297 aa) fasta scores: E(): 4.2e-45, 47.88% id in 284 aa; hypothetical protein complement(124389..125273) Bordetella parapertussis 12822 1668811 NP_882482.1 CDS BPP0120 NC_002928.3 126712 127281 R ortholog of Bordetella pertussis (BX470248) BP0715; Similar to Ralstonia solanacearum probable transmembrane protein rsc1464 or rs03843 SWALL:Q8XZD7 (EMBL:AL646064) (213 aa) fasta scores: E(): 5e-15, 39.62% id in 159 aa, and to Rhizobium loti hypothetical protein Mll5403 SWALL:Q98BW2 (EMBL:AP003006) (149 aa) fasta scores: E(): 3.9e-13, 36.55% id in 145 aa; hypothetical protein complement(126712..127281) Bordetella parapertussis 12822 1668817 NP_882483.1 CDS BPP0121 NC_002928.3 127555 128532 D Similar to Salmonella typhi Vi polysaccharide biosynthesis protein Vipb or TviC or STY4660 SWALL:VIPB_SALTI (SWALL:Q04973) (348 aa) fasta scores: E(): 1.1e-22, 31.59% id in 326 aa, and to Methanopyrus kandleri AV19 nucleoside-diphosphate-sugar epimerase MK0724 SWALL:AAM01938 (EMBL:AE010366) (309 aa) fasta scores: E(): 3.3e-31, 37.17% id in 312 aa; NAD dependent epimerase/dehydratase 127555..128532 Bordetella parapertussis 12822 1668819 NP_882484.1 CDS BPP0122 NC_002928.3 128529 129689 D Similar to Bacillus subtilis spore coat polysaccharide biosynthesis protein SpsC SWALL:SPSC_BACSU (SWALL:P39623) (389 aa) fasta scores: E(): 7.6e-50, 41.12% id in 372 aa, and to Salmonella typhi lipopolysaccharide biosynthesis protein STY2527 SWALL:Q8Z542 (EMBL:AL627274) (385 aa) fasta scores: E(): 2.8e-46, 38.38% id in 383 aa; DegT/DnrJ/EryC1/StrS aminotransferase 128529..129689 Bordetella parapertussis 12822 1668820 NP_882485.1 CDS BPP0123 NC_002928.3 129810 131684 D Similar to Bacillus subtilis asparagine synthetase [glutamine-hydrolyzing] 3 AsnO SWALL:ASNO_BACSU (SWALL:O05272) (614 aa) fasta scores: E(): 4.1e-43, 30.24% id in 625 aa, and to Desulfovibrio gigas asparagine synthetase Asn SWALL:Q9KJI6 (EMBL:AF168003) (643 aa) fasta scores: E(): 9.7e-57, 33.28% id in 664 aa; asparagine synthetase 129810..131684 Bordetella parapertussis 12822 1668823 NP_882486.1 CDS wbmU NC_002928.3 131817 132755 D Similar to Escherichia coli methionyl-tRNA formyltransferase Fmt SWALL:FMT_ECOLI (SWALL:P23882) (314 aa) fasta scores: E(): 5.5e-15, 26.68% id in 311 aa. Identical to Bordetella bronchiseptica formyl transferase Bblps1.01 SWALL:O87974 (EMBL:AJ007747) (274 aa) fasta scores: E(): 6.5e-107, 100% id in 274 aa. CDS is extended at the N-terminus in comparison to the B. bronchiseptica protein; formyl transferase 131817..132755 Bordetella parapertussis 12822 1668824 NP_882487.1 CDS wbmT NC_002928.3 132752 133540 D Almost identical to Bordetella bronchiseptica hypothetical protein Bblps1.02 SWALL:O87975 (EMBL:AJ007747) (262 aa) fasta scores: E(): 1.3e-109, 99.61% id in 262 aa; hypothetical protein 132752..133540 Bordetella parapertussis 12822 1668825 NP_882488.1 CDS wbmS NC_002928.3 133537 134256 D Identical to Bordetella bronchiseptica hypothetical protein Bblps1.03 SWALL:O87976 (EMBL:AJ007747) (239 aa) fasta scores: E(): 1.1e-105, 100% id in 239 aa; hypothetical protein 133537..134256 Bordetella parapertussis 12822 1668826 NP_882489.1 CDS wbmR NC_002928.3 134253 135182 D Identical to Bordetella bronchiseptica formyl transferase Bblps1.04 SWALL:O87977 (EMBL:AJ007747) (309 aa) fasta scores: E(): 8.5e-127, 100% id in 309 aa. Weakly similar to Escherichia coli methionyl-tRNA formyltransferase Fmt SWALL:FMT_ECOLI (SWALL:P23882) (314 aa) fasta scores: E(): 4e-11, 27.74% id in 292 aa; formyl transferase 134253..135182 Bordetella parapertussis 12822 1668827 NP_882490.1 CDS wbmQ NC_002928.3 135205 136029 D Identical to Bordetella bronchiseptica formyl transferase Bblps1.05 SWALL:O87978 (EMBL:AJ007747) (274 aa) fasta scores: E(): 1.5e-108, 100% id in 274 aa. Poor database matches to the full length CDS. C-terminal region is similar to internal region of Escherichia coli UDP-D-glucuronate dehydrogenase ArnA SWALL:AAL23678 (EMBL:AY057445) (660 aa) fasta scores: E(): 9.8e-15, 33.33% id in 204 aa; formyl transferase 135205..136029 Bordetella parapertussis 12822 1668828 NP_882491.1 CDS wbmP NC_002928.3 136026 136745 D Almost identical to Bordetella bronchiseptica hypothetical protein Bblps1.06 SWALL:O87979 (EMBL:AJ007747) (239 aa) fasta scores: E(): 1.4e-102, 99.58% id in 239 aa. Similar to Mycobacterium tuberculosis hypothetical protein Rv1507c SWALL:YF07_MYCTU (SWALL:P71786) (231 aa) fasta scores: E(): 4.7e-17, 30.76% id in 221 aa; hypothetical protein 136026..136745 Bordetella parapertussis 12822 1668829 NP_882492.1 CDS wbmO NC_002928.3 136753 138051 D Almost identical to Bordetella bronchiseptica hypothetical protein Bblps1.07 SWALL:O87980 (EMBL:AJ007747) (432 aa) fasta scores: E(): 1.9e-191, 99.76% id in 432 aa; hypothetical protein 136753..138051 Bordetella parapertussis 12822 1668830 NP_882493.1 CDS wbmN NC_002928.3 138048 139217 D Similar to Aeromonas salmonicida ABC transporter protein AbcA SWALL:ABCA_AERSA (SWALL:Q07698) (308 aa) fasta scores: E(): 2.1e-22, 39.68% id in 252 aa. Identical to Bordetella bronchiseptica ABC transporter ATP-binding protein Bblps1.08 SWALL:O87981 (EMBL:AJ007747) (389 aa) fasta scores: E(): 2.3e-132, 100% id in 389 aa; ABC transporter ATP-binding protein 138048..139217 Bordetella parapertussis 12822 1668831 NP_882494.1 CDS wbmM NC_002928.3 139210 140418 D Similar to Myxococcus xanthus O-antigen export system ATP-binding protein RfbB SWALL:RFBB_MYXXA (SWALL:Q50863) (437 aa) fasta scores: E(): 1.2e-27, 36.5% id in 378 aa. Identical to Bordetella bronchiseptica ABC transporter ATP-binding protein Bblps1.09 SWALL:O87982 (EMBL:AJ007747) (402 aa) fasta scores: E(): 6.6e-128, 100% id in 402 aa; ABC transporter ATP-binding protein 139210..140418 Bordetella parapertussis 12822 1668832 NP_882495.1 CDS wbmL NC_002928.3 140425 141216 D Identical to Bordetella bronchiseptica ABC transporter integral membrane protein Bblps1.10 SWALL:O87983 (EMBL:AJ007747) (263 aa) fasta scores: E(): 5.6e-98, 100% id in 263 aa. Similar to Myxococcus xanthus O-antigen export system permease RfbA SWALL:RFBA_MYXXA (SWALL:Q50862) (260 aa) fasta scores: E(): 3.2e-18, 26.8% id in 250 aa; ABC transporter 140425..141216 Bordetella parapertussis 12822 1668833 NP_882496.1 CDS wbmK NC_002928.3 141213 143813 D Almost identical to Bordetella bronchiseptica hypothetical protein Bblps1.11 SWALL:O87984 (EMBL:AJ007747) (866 aa) fasta scores: E(): 0, 99.65% id in 866 aa; hypothetical protein 141213..143813 Bordetella parapertussis 12822 1668834 NP_882497.1 CDS wbmJ NC_002928.3 143869 146505 D Almost identical to Bordetella bronchiseptica hypothetical protein Bblps1.12 SWALL:O87985 (EMBL:AJ007747) (878 aa) fasta scores: E(): 0, 99.54% id in 878 aa; hypothetical protein 143869..146505 Bordetella parapertussis 12822 1668835 NP_882498.1 CDS wbmI NC_002928.3 146606 148516 D Identical to Bordetella bronchiseptica glutamine amidotransferase Bblps1.13 SWALL:O87986 (EMBL:AJ007747) (636 aa) fasta scores: E(): 0, 100% id in 636 aa. Similar to Bacillus subtilis asparagine synthetase [glutamine-hydrolyzing] 1 AsnB or Asn SWALL:ASNB_BACSU (SWALL:P54420) (632 aa) fasta scores: E(): 2.9e-44, 32.76% id in 641 aa; asparagine synthetase 146606..148516 Bordetella parapertussis 12822 1668836 NP_882499.1 CDS wbmH NC_002928.3 148545 149486 D Identical to Bordetella bronchiseptica nucleotide sugar epimerase/ dehydratase Bblps1.14 SWALL:O87987 (EMBL:AJ007747) (313 aa) fasta scores: E(): 1.3e-126, 100% id in 313 aa. Weakly similar to Lactobacillus casei UDP-glucose 4-epimerase GalE SWALL:GALE_LACCA (SWALL:O84903) (331 aa) fasta scores: E(): 1.2e-10, 29.45% id in 309 aa; nucleotide sugar epimerase/dehydratase 148545..149486 Bordetella parapertussis 12822 1668837 NP_882500.1 CDS wbmG NC_002928.3 149491 150423 D Identical to Bordetella bronchiseptica nucleotide sugar epimerase/ dehydratase Bblps1.15 SWALL:O87988 (EMBL:AJ007747) (310 aa) fasta scores: E(): 1.6e-120, 100% id in 310 aa. Weakly similar to Lactobacillus casei UDP-glucose 4-epimerase GalE SWALL:GALE_LACCA (SWALL:O84903) (331 aa) fasta scores: E(): 4.2e-12, 28.61% id in 325 aa; nucleotide sugar epimerase/dehydratase 149491..150423 Bordetella parapertussis 12822 1668838 NP_882501.1 CDS wbmF NC_002928.3 150428 151501 D Identical to Bordetella bronchiseptica nucleotide sugar epimerase/ dehydratase Bblps1.16 SWALL:O87989 (EMBL:AJ007747) (357 aa) fasta scores: E(): 3.9e-140, 100% id in 357 aa. Similar to Lactobacillus casei UDP-glucose 4-epimerase GalE SWALL:GALE_LACCA (SWALL:O84903) (331 aa) fasta scores: E(): 5.6e-13, 28.57% id in 329 aa; nucleotide sugar epimerase/dehydratase 150428..151501 Bordetella parapertussis 12822 1668839 NP_882502.1 CDS wbmE NC_002928.3 151864 153045 R Almost identical to Bordetella bronchiseptica secreted protein Bblps1.17C SWALL:O87990 (EMBL:AJ007747) (393 aa) fasta scores: E(): 6.3e-146, 99.74% id in 393 aa; hypothetical protein complement(151864..153045) Bordetella parapertussis 12822 1668840 NP_882503.1 CDS wbmD NC_002928.3 153168 154190 R Almost identical to Bordetella bronchiseptica membrane protein Bblps1.18c SWALL:O87991 (EMBL:AJ007747) (340 aa) fasta scores: E(): 5.8e-131, 99.7% id in 340 aa; hypothetical protein complement(153168..154190) Bordetella parapertussis 12822 1668841 NP_882504.1 CDS wbmC NC_002928.3 154266 156152 R Almost identical to Bordetella bronchiseptica glutamine amidotransferase Bblps1.19c SWALL:O87992 (EMBL:AJ007747) (628 aa) fasta scores: E(): 0, 99.04% id in 628 aa. Similar to Bacillus subtilis asparagine synthetase [glutamine-hydrolyzing] 1 AsnB or Asn SWALL:ASNB_BACSU (SWALL:P54420) (632 aa) fasta scores: E(): 2.5e-34, 29.7% id in 643 aa; glutamine amidotransferase complement(154266..156152) Bordetella parapertussis 12822 1668842 NP_882505.1 CDS wbmB NC_002928.3 156214 157314 D Almost identical to Bordetella bronchiseptica hypothetical protein Bblps1.20 SWALL:O87993 (EMBL:AJ007747) (361 aa) fasta scores: E(): 7.6e-148, 99.44% id in 361 aa. C-terminus is weakly similar to the the C-terminal regions of Xylella fastidiosa hypothetical protein XF0885 SWALL:Q9PEZ3 (EMBL:AE003928) (443 aa) fasta scores: E(): 0.21, 24.77% id in 327 aa; hypothetical protein 156214..157314 Bordetella parapertussis 12822 1668843 NP_882506.1 CDS wbmA NC_002928.3 157304 158521 D Almost identical to Bordetella bronchiseptica hypothetical protein Bblps1.21 SWALL:O87994 (EMBL:AJ007747) (405 aa) fasta scores: E(): 1.7e-167, 99.75% id in 405 aa. Poor database matches. C-terminus is weakly similar to the C-terminal region of Escherichia coli colanic acid biosynthesis glycosyl transferase WcaL SWALL:WCAL_ECOLI (SWALL:P71243) (406 aa) fasta scores: E(): 0.00051, 22.75% id in 334 aa; glycosyl transferase family protein 157304..158521 Bordetella parapertussis 12822 1668844 NP_882507.1 CDS bplL NC_002928.3 158539 160413 R ortholog of Bordetella pertussis (BX470248) BP0082; lipopolysaccharide biosynthesis protein complement(158539..160413) Bordetella parapertussis 12822 1668845 NP_882508.1 CDS bplJ NC_002928.3 160462 161709 R ortholog of Bordetella pertussis (BX470248) BP0083; hypothetical protein complement(160462..161709) Bordetella parapertussis 12822 1668846 NP_882509.1 CDS bplI NC_002928.3 161759 162463 R ortholog of Bordetella pertussis (BX470248) BP0085; lipopolysaccharide biosynthesis protein complement(161759..162463) Bordetella parapertussis 12822 1668847 NP_882510.1 CDS bplH NC_002928.3 162460 163566 R ortholog of Bordetella pertussis (BX470248) BP0086; glycosyl transferase family protein complement(162460..163566) Bordetella parapertussis 12822 1668848 NP_882511.1 CDS bplG NC_002928.3 163828 164421 R ortholog of Bordetella pertussis (BX470248) BP0087; sugar transferase complement(163828..164421) Bordetella parapertussis 12822 1668849 NP_882512.1 CDS bplF NC_002928.3 164418 165650 R ortholog of Bordetella pertussis (BX470248) BP0088; lipopolysaccharide biosynthesis protein complement(164418..165650) Bordetella parapertussis 12822 1668850 NP_882513.1 CDS bplE NC_002928.3 165668 166927 R ortholog of Bordetella pertussis (BX470248) BP0089; glycosyl transferase family protein complement(165668..166927) Bordetella parapertussis 12822 1668851 NP_882514.1 CDS bplD NC_002928.3 166951 167937 R ortholog of Bordetella pertussis (BX470248) BP0090; UDP-N-acetylglucosamine 2-epimerase complement(166951..167937) Bordetella parapertussis 12822 1668852 NP_882515.1 CDS bplC NC_002928.3 168047 169147 R ortholog of Bordetella pertussis (BX470248) BP0091; lipopolysaccharide biosynthesis protein complement(168047..169147) Bordetella parapertussis 12822 1668853 NP_882516.1 CDS bplB NC_002928.3 169151 169726 R ortholog of Bordetella pertussis (BX470248) BP0092; acetyltransferase complement(169151..169726) Bordetella parapertussis 12822 1668854 NP_882517.1 CDS bplA NC_002928.3 169730 170941 R ortholog of Bordetella pertussis (BX470248) BP0093; oxidoreductase complement(169730..170941) Bordetella parapertussis 12822 1668855 NP_882518.1 CDS rfaC NC_002928.3 170958 171920 D ortholog of Bordetella pertussis (BX470248) BP0094; heptosyltransferase 170958..171920 Bordetella parapertussis 12822 1668856 NP_882519.1 CDS kdtA NC_002928.3 171922 173214 D ortholog of Bordetella pertussis (BX470248) BP0095; 3-deoxy-D-manno-octulosonic-acid transferase 171922..173214 Bordetella parapertussis 12822 1668857 NP_882520.1 CDS BPP0158 NC_002928.3 173240 174076 R Similar to Bordetella bronchiseptica membrane protein Bblps1.18C SWALL:O87991 (EMBL:AJ007747) (340 aa) fasta scores: E(): 1.9e-06, 23.59% id in 195 aa; hypothetical protein complement(173240..174076) Bordetella parapertussis 12822 1668858 NP_882521.1 CDS birA NC_002928.3 175227 176093 R ortholog of Bordetella pertussis (BX470248) BP0098; biotin--protein ligase complement(175227..176093) Bordetella parapertussis 12822 1668860 NP_882522.1 CDS BPP0161 NC_002928.3 176162 177298 D ortholog of Bordetella pertussis (BX470248) BP0099; integral membrane protein 176162..177298 Bordetella parapertussis 12822 1668861 NP_882523.1 CDS BPP0162 NC_002928.3 177298 178137 D ortholog of Bordetella pertussis (BX470248) BP0100; ABC transporter ATP-binding protein 177298..178137 Bordetella parapertussis 12822 1668862 NP_882524.1 CDS BPP0163 NC_002928.3 178124 179071 D ortholog of Bordetella pertussis (BX470248) BP0101; hypothetical protein 178124..179071 Bordetella parapertussis 12822 1668863 NP_882525.1 CDS BPP0164 NC_002928.3 179072 179677 D ortholog of Bordetella pertussis (BX470248) BP0101A; hypothetical protein 179072..179677 Bordetella parapertussis 12822 1668864 NP_882526.1 CDS BPP0165 NC_002928.3 179707 180360 D ortholog of Bordetella pertussis (BX470248) BP0101B; hypothetical protein 179707..180360 Bordetella parapertussis 12822 1668865 NP_882527.1 CDS BPP0166 NC_002928.3 180493 181749 D ortholog of Bordetella pertussis (BX470248) BP0102; penicillin-binding protein precursor 180493..181749 Bordetella parapertussis 12822 1668866 NP_882528.1 CDS BPP0167 NC_002928.3 181752 182696 D ortholog of Bordetella pertussis (BX470248) BP0103; class IV aminotransferase 181752..182696 Bordetella parapertussis 12822 1668867 NP_882529.1 CDS BPP0168 NC_002928.3 182772 183047 D ortholog of Bordetella pertussis (BX470248) BP0104; hypothetical protein 182772..183047 Bordetella parapertussis 12822 1668868 NP_882530.1 CDS lipB NC_002928.3 183055 183717 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 183055..183717 Bordetella parapertussis 12822 1668869 NP_882531.1 CDS lipA NC_002928.3 183779 184780 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 183779..184780 Bordetella parapertussis 12822 1668870 NP_882532.1 CDS rfbC NC_002928.3 184795 185343 R ortholog of Bordetella pertussis (BX470248) BP0107; dTDP-4-dehydrorhamnose 3,5-epimerase complement(184795..185343) Bordetella parapertussis 12822 1668871 NP_882533.1 CDS rfbD NC_002928.3 185401 186357 R ortholog of Bordetella pertussis (BX470248) BP0108; dTDP-4-dehydrorhamnose reductase complement(185401..186357) Bordetella parapertussis 12822 1668872 NP_882534.1 CDS rfbB NC_002928.3 186294 187355 R ortholog of Bordetella pertussis (BX470248) BP0109; dTDP-glucose 4,6-dehydratase complement(186294..187355) Bordetella parapertussis 12822 1668873 NP_882535.1 CDS BPP0174 NC_002928.3 187391 187951 R ortholog of Bordetella pertussis (BX470248) BP3090; hypothetical protein complement(187391..187951) Bordetella parapertussis 12822 1668874 NP_882536.1 CDS BPP0175 NC_002928.3 188374 188679 D ortholog of Bordetella pertussis (BX470248) BP3088; hypothetical protein 188374..188679 Bordetella parapertussis 12822 1668875 NP_882537.1 CDS hslU NC_002928.3 188722 190056 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(188722..190056) Bordetella parapertussis 12822 1668876 NP_882538.1 CDS hslV NC_002928.3 190078 190617 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(190078..190617) Bordetella parapertussis 12822 1668877 NP_882539.1 CDS dksA NC_002928.3 190765 191229 R ortholog of Bordetella pertussis (BX470248) BP3085; dnaK suppressor protein complement(190765..191229) Bordetella parapertussis 12822 1668878 NP_882540.1 CDS BPP0179 NC_002928.3 191373 192482 R ortholog of Bordetella pertussis (BX470248) BP3084; hypothetical protein complement(191373..192482) Bordetella parapertussis 12822 1668879 NP_882541.1 CDS BPP0180 NC_002928.3 192759 193262 R ortholog of Bordetella pertussis (BX470248) BP3083; regulatory protein complement(192759..193262) Bordetella parapertussis 12822 1668880 NP_882542.1 CDS BPP0181 NC_002928.3 193592 194314 D ortholog of Bordetella pertussis (BX470248) BP3082; transport protein ATP-binding 193592..194314 Bordetella parapertussis 12822 1668881 NP_882543.1 CDS BPP0182 NC_002928.3 194311 195207 D ortholog of Bordetella pertussis (BX470248) BP3081; ABC transporter permease 194311..195207 Bordetella parapertussis 12822 1668882 NP_882544.1 CDS BPP0183 NC_002928.3 195204 196133 D ortholog of Bordetella pertussis (BX470248) BP3080; periplasmic solute binding protein 195204..196133 Bordetella parapertussis 12822 1668883 NP_882545.1 CDS BPP0184 NC_002928.3 196181 196762 D ortholog of Bordetella pertussis (BX470248) BP3079; hypothetical protein 196181..196762 Bordetella parapertussis 12822 1668884 NP_882546.1 CDS BPP0185 NC_002928.3 196753 197721 D ortholog of Bordetella pertussis (BX470248) BP3078; hypothetical protein 196753..197721 Bordetella parapertussis 12822 1668885 NP_882547.1 CDS BPP0186 NC_002928.3 197770 199905 D ortholog of Bordetella pertussis (BX470248) BP3077; outer membrane protein 197770..199905 Bordetella parapertussis 12822 1668886 NP_882548.1 CDS xerC NC_002928.3 199918 200898 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(199918..200898) Bordetella parapertussis 12822 1668887 NP_882549.1 CDS BPP0188 NC_002928.3 200913 201605 R ortholog of Bordetella pertussis (BX470248) BP3075; hypothetical protein complement(200913..201605) Bordetella parapertussis 12822 1668888 NP_882550.1 CDS dapF NC_002928.3 201632 202543 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(201632..202543) Bordetella parapertussis 12822 1668889 NP_882551.1 CDS BPP0190 NC_002928.3 202586 203476 R ortholog of Bordetella pertussis (BX470248) BP3073; acyltransferase complement(202586..203476) Bordetella parapertussis 12822 1668890 NP_882552.1 CDS BPP0191 NC_002928.3 203473 204339 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(203473..204339) Bordetella parapertussis 12822 1668891 NP_882553.2 CDS metK NC_002928.3 204622 205785 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 204622..205785 Bordetella parapertussis 12822 1668892 NP_882554.1 CDS BPP0193 NC_002928.3 205896 206144 D ortholog of Bordetella pertussis (BX470248) BP3070; hypothetical protein 205896..206144 Bordetella parapertussis 12822 1668893 NP_882555.1 CDS BPP0194 NC_002928.3 206224 207264 D ortholog of Bordetella pertussis (BX470248) BP3069; glycosyl transferase family protein 206224..207264 Bordetella parapertussis 12822 1668894 NP_882556.1 CDS acyH NC_002928.3 207544 208962 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 207544..208962 Bordetella parapertussis 12822 1668895 NP_882557.1 CDS BPP0196 NC_002928.3 209033 209368 D ortholog of Bordetella pertussis (BX470248) BP3067; hypothetical protein 209033..209368 Bordetella parapertussis 12822 1668896 NP_882558.1 CDS BPP0197 NC_002928.3 209368 210210 D ortholog of Bordetella pertussis (BX470248) BP3066; methylenetetrahydrofolate reductase 209368..210210 Bordetella parapertussis 12822 1668897 NP_882559.1 CDS BPP0198 NC_002928.3 210274 211245 R ortholog of Bordetella pertussis (BX470248) BP3064; transcriptional regulator complement(210274..211245) Bordetella parapertussis 12822 1668898 NP_882560.1 CDS BPP0199 NC_002928.3 211309 212328 R ortholog of Bordetella pertussis (BX470248) BP3063; aminohydrolase complement(211309..212328) Bordetella parapertussis 12822 1668899 NP_882561.1 CDS BPP0200 NC_002928.3 212330 213703 R ortholog of Bordetella pertussis (BX470248) BP3062; integral membrane transport protein complement(212330..213703) Bordetella parapertussis 12822 1668900 NP_882562.1 CDS BPP0201 NC_002928.3 213980 214660 R ortholog of Bordetella pertussis (BX470248) BP3061; 5-formyltetrahydrofolate cyclo-ligase complement(213980..214660) Bordetella parapertussis 12822 1668903 NP_882563.1 CDS BPP0202 NC_002928.3 214673 216799 D ortholog of Bordetella pertussis (BX470248) BP3060; transglycosylase 214673..216799 Bordetella parapertussis 12822 1668904 NP_882564.1 CDS cca NC_002928.3 216796 217890 D catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 216796..217890 Bordetella parapertussis 12822 1668905 NP_882565.1 CDS BPP0204 NC_002928.3 217905 219164 R ortholog of Bordetella pertussis (BX470248) BP3058; hypothetical protein complement(217905..219164) Bordetella parapertussis 12822 1668906 NP_882566.1 CDS BPP0205 NC_002928.3 219184 220932 R ortholog of Bordetella pertussis (BX470248) BP3057; ATP-dependent RNA helicase complement(219184..220932) Bordetella parapertussis 12822 1668907 NP_882567.1 CDS ung NC_002928.3 221099 221851 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(221099..221851) Bordetella parapertussis 12822 1668908 NP_882568.1 CDS BPP0207 NC_002928.3 221888 222616 R Similar to Ralstonia solanacearum hypothetical protein RSC0271 SWALL:Q8Y2R4 (EMBL:AL646058) (229 aa) fasta scores: E(): 2.3e-35, 52.7% id in 222 aa, and to Streptomyces coelicolor hydrolase SCE68.31c SWALL:Q9WX01 (EMBL:AL079345) (215 aa) fasta scores: E(): 4.6e-21, 40% id in 220 aa; haloacid dehalogenase-like hydrolase complement(221888..222616) Bordetella parapertussis 12822 1668909 NP_882569.1 CDS BPP0208 NC_002928.3 222669 223406 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(222669..223406) Bordetella parapertussis 12822 1668910 NP_882570.1 CDS BPP0209 NC_002928.3 223565 224380 D Similar to Pseudomonas aeruginosa hypothetical protein PA1350 SWALL:Q9I3Z4 (EMBL:AE004564) (249 aa) fasta scores: E(): 1e-55, 59.59% id in 245 aa, and to Ralstonia solanacearum hypothetical protein RSC1113 SWALL:Q8Y0D1 (EMBL:AL646062) (244 aa) fasta scores: E(): 1.5e-55, 57.37% id in 244 aa; hypothetical protein 223565..224380 Bordetella parapertussis 12822 1668911 NP_882571.1 CDS BPP0210 NC_002928.3 224386 225165 R Similar to Pseudomonas aeruginosa probable transcriptional regulator PA2488 SWALL:Q9I0Z4 (EMBL:AE004676) (254 aa) fasta scores: E(): 1e-25, 38.09% id in 252 aa, and to Rhizobium meliloti transcription regulator protein SMC00994 SWALL:Q92RK7 (EMBL:AL591785) (260 aa) fasta scores: E(): 1.2e-22, 35.06% id in 231 aa; AraC family transcription regulator complement(224386..225165) Bordetella parapertussis 12822 1668912 NP_882572.1 CDS fur NC_002928.3 225277 225717 D Similar to Bordetella pertussis ferric uptake regulation protein Fur SWALL:FUR_BORPE (SWALL:Q45765) (139 aa) fasta scores: E(): 2.8e-23, 50.76% id in 130 aa, and to Burkholderia cepacia ferric uptake regulator Fur SWALL:Q9AP02 (EMBL:AF317836) (142 aa) fasta scores: E(): 4.2e-21, 51.53% id in 130 aa; ferric uptake regulation protein 225277..225717 Bordetella parapertussis 12822 1668913 NP_882573.1 CDS BPP0212 NC_002928.3 225714 226112 D Similar to Ralstonia solanacearum hypothetical protein RSC1812 SWALL:Q8XYE6 (EMBL:AL646066) (138 aa) fasta scores: E(): 1.8, 25.37% id in 134 aa, and to the C-terminal region of Pseudomonas aeruginosa hypothetical protein PA3720 SWALL:Q9HXS1 (EMBL:AE004791) (195 aa) fasta scores: E(): 1.6e-07, 33.08% id in 136 aa; hypothetical protein 225714..226112 Bordetella parapertussis 12822 1668914 NP_882574.1 CDS BPP0213 NC_002928.3 226120 227316 R Similar to Escherichia coli Na+/H+ antiporter 1 NhaA or Ant SWALL:NHAA_ECOLI (SWALL:P13738) (388 aa) fasta scores: E(): 2.1e-68, 52.82% id in 390 aa, and to Rhizobium loti Na+/H+ antiporter MLR5309 SWALL:Q98C38 (EMBL:AP003006) (398 aa) fasta scores: E(): 3.7e-86, 61.05% id in 398 aa; Na+/H+ antiporter protein complement(226120..227316) Bordetella parapertussis 12822 1668915 NP_882575.1 CDS BPP0214 NC_002928.3 227508 227858 D No significant database matches. Doubtful CDS; hypothetical protein 227508..227858 Bordetella parapertussis 12822 1668916 NP_882576.1 CDS BPP0215 NC_002928.3 227842 228975 D Similar to Xylella fastidiosa hypothetical protein XF1470 SWALL:Q9PDA9 (EMBL:AE003977) (376 aa) fasta scores: E(): 4.8e-20, 42.48% id in 379 aa, and to Streptomyces coelicolor glycosyl transferase SCH4.05c SWALL:Q9KYT4 (EMBL:AL355913) (391 aa) fasta scores: E(): 3.8e-14, 33.06% id in 372 aa; glycosyl transferase family protein 227842..228975 Bordetella parapertussis 12822 1668917 NP_882577.1 CDS BPP0216 NC_002928.3 228985 229449 R Poor database matches. Weakly similar to Halobacterium sp histidine triad protein VNG2186G SWALL:Q9HNA0 (EMBL:AE005106) (142 aa) fasta scores: E(): 0.33, 30.14% id in 136 aa; hypothetical protein complement(228985..229449) Bordetella parapertussis 12822 1668919 NP_882578.1 CDS BPP0217 NC_002928.3 229446 229895 R Similar to Pseudomonas aeruginosa probable acetyltransferase PA5432 SWALL:Q9HTD4 (EMBL:AE004956) (149 aa) fasta scores: E(): 2.4e-44, 67.34% id in 147 aa, and weakly similar to Enterobacter aerogenes aminoglycoside N(6')-acyltransferase AacA7 SWALL:AAC6_ENTAE (SWALL:P50858) (152 aa) fasta scores: E(): 0.023, 24.66% id in 150 aa; acetyltransferase (GNAT) family protein complement(229446..229895) Bordetella parapertussis 12822 1667845 NP_882579.1 CDS BPP0218 NC_002928.3 229928 231451 R Similar to Pseudomonas aeruginosa hypothetical protein PA3455 SWALL:Q9HYF1 (EMBL:AE004766) (496 aa) fasta scores: E(): 6.7e-90, 49.38% id in 490 aa, and to Synechocystis sp hypothetical protein SLR1363 SWALL:P73537 (EMBL:D90907) (500 aa) fasta scores: E(): 2.1e-57, 34.83% id in 488 aa. Possible alternative translational start site; hypothetical protein complement(229928..231451) Bordetella parapertussis 12822 1668920 NP_882580.1 CDS BPP0219 NC_002928.3 231465 232334 R Similar to Ralstonia solanacearum hypothetical protein RSC1544 SWALL:Q8XZ60 (EMBL:AL646065) (286 aa) fasta scores: E(): 5.6e-77, 67.24% id in 290 aa, and to Pseudomonas aeruginosa hypothetical protein PA2915 SWALL:Q9HZT2 (EMBL:AE004717) (288 aa) fasta scores: E(): 5.2e-70, 61.24% id in 289 aa; metallo-beta-lactamase superfamily protein complement(231465..232334) Bordetella parapertussis 12822 1668921 NP_882581.1 CDS BPP0220 NC_002928.3 232438 232773 D Similar to Vibrio cholerae transcriptional activator HlyU SWALL:HLYU_VIBCH (SWALL:P52695) (108 aa) fasta scores: E(): 1.2e-10, 43.61% id in 94 aa, and to Ralstonia solanacearum probable transcription regulator protein RSC1543 SWALL:Q8XZ61 (EMBL:AL646065) (121 aa) fasta scores: E(): 1.2e-26, 72.54% id in 102 aa; transcription regulator ArsR 232438..232773 Bordetella parapertussis 12822 1668923 NP_882582.1 CDS BPP0221 NC_002928.3 232770 233201 D Similar to Ralstonia solanacearum probable transmembrane protein RSC0438 SWALL:Q8Y298 (EMBL:AL646059) (144 aa) fasta scores: E(): 4.9e-25, 60.41% id in 144 aa, and to Rhizobium meliloti hypothetical protein SMA1053 SWALL:Q92ZC0 (EMBL:AE007247) (136 aa) fasta scores: E(): 1.8e-18, 54.41% id in 136 aa; hypothetical protein 232770..233201 Bordetella parapertussis 12822 1668924 NP_882583.1 CDS BPP0223 NC_002928.3 233633 234898 R Similar to Azoarcus evansii aerobic phenylacetate-CoA ligase PaaK or PacD SWALL:Q9L9C1 (EMBL:AF176259) (440 aa) fasta scores: E(): 8.5e-22, 29.73% id in 417 aa, and to Archaeoglobus fulgidus coenzyme F390 synthetase Af2013 SWALL:O28266 (EMBL:AE000964) (440 aa) fasta scores: E(): 9.3e-24, 30.04% id in 446 aa; phenylacetate-CoA ligase complement(233633..234898) Bordetella parapertussis 12822 1668930 NP_882584.1 CDS BPP0224 NC_002928.3 234967 235797 R Similar to Salmonella typhimurium and Salmonella typhi high-affinity branched-chain amino acid transport ATP-binding protein LivF or LivG SWALL:LIVF_SALTY (SWALL:P30294) (237 aa) fasta scores: E(): 2.8e-26, 41.8% id in 244 aa, and to Rhizobium loti ABC transporter, ATP-binding protein MLR5224 SWALL:Q98CB2 (EMBL:AP003006) (268 aa) fasta scores: E(): 5.1e-45, 56.07% id in 255 aa; ABC transporter ATP-binding protein complement(234967..235797) Bordetella parapertussis 12822 1668931 NP_882585.1 CDS BPP0226 NC_002928.3 237305 238369 R Similar to Rhizobium loti ABC transporter, permease MLR5222 SWALL:Q98CB4 (EMBL:AP003006) (346 aa) fasta scores: E(): 2.1e-56, 50.62% id in 318 aa, and to Agrobacterium tumefaciens str. C58 ABC transporter, membrane spanning protein ATU5523 SWALL:AAL46209 (EMBL:AE008972) (364 aa) fasta scores: E(): 3.4e-55, 47.98% id in 323 aa; branched-chain amino acid ABC transporter permease complement(237305..238369) Bordetella parapertussis 12822 1668933 NP_882586.1 CDS BPP0227 NC_002928.3 238380 239309 R Similar to Salmonella typhimurium and Salmonella typhi high-affinity branched-chain amino acid transport system permease LivH or LivA SWALL:LIVH_SALTY (SWALL:P30295) (308 aa) fasta scores: E(): 3.5e-19, 27.18% id in 320 aa, and to Rhizobium loti ABC transporter, permease MLR5220 SWALL:Q98CB5 (EMBL:AP003006) (299 aa) fasta scores: E(): 3.5e-40, 50.81% id in 307 aa; branched-chain amino acid ABC transporter permease complement(238380..239309) Bordetella parapertussis 12822 1668934 NP_882587.1 CDS BPP0228 NC_002928.3 239320 240117 R Similar to Salmonella typhimurium and Salmonella typhi high-affinity branched-chain amino acid transport ATP-binding protein LivG or LivF SWALL:LIVG_SALTY (SWALL:P30293) (255 aa) fasta scores: E(): 2.7e-29, 38.58% id in 254 aa, and to Rhizobium loti ABC transporter, ATP-binding protein MLR5219 SWALL:Q98CB6 (EMBL:AP003006) (272 aa) fasta scores: E(): 3.8e-43, 55.37% id in 251 aa; high-affinity branched-chain amino acid transport ATP-binding protein complement(239320..240117) Bordetella parapertussis 12822 1668935 NP_882588.1 CDS BPP0229 NC_002928.3 240121 242097 R Similar to Aeropyrum pernix hypothetical long-chain-fatty-acid--CoA ligase APE1307 SWALL:Q9YCF0 (EMBL:AP000061) (651 aa) fasta scores: E(): 1.4e-81, 37.95% id in 635 aa, and weakly similar to Homo sapiens very long-chain acyl-CoA synthetase BG1 SWALL:Q9HC26 (EMBL:AF179481) (724 aa) fasta scores: E(): 1.9e-28, 25.03% id in 639 aa; AMP-binding enzyme complement(240121..242097) Bordetella parapertussis 12822 1668936 NP_882589.1 CDS BPP0230 NC_002928.3 242264 242974 D Weakly similar to Escherichia coli catabolite gene activator Crp or Cap or Csm SWALL:CRP_ECOLI (SWALL:P03020) (210 aa) fasta scores: E(): 0.00055, 24.59% id in 187 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA0275 SWALL:Q9I6L5 (EMBL:AE004465) (228 aa) fasta scores: E(): 5.9e-09, 29.57% id in 213 aa; cyclic nucleotide-binding protein 242264..242974 Bordetella parapertussis 12822 1668937 NP_882590.1 CDS BPP0231 NC_002928.3 242981 243616 R ortholog of Bordetella pertussis (BX470248) BP0564; transporter complement(242981..243616) Bordetella parapertussis 12822 1668938 NP_882591.1 CDS BPP0232 NC_002928.3 243746 244645 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 243746..244645 Bordetella parapertussis 12822 1668939 NP_882592.1 CDS BPP0233 NC_002928.3 244741 245232 D ortholog of Bordetella pertussis (BX470248) BP0562; hypothetical protein 244741..245232 Bordetella parapertussis 12822 1668940 NP_882593.1 CDS BPP0234 NC_002928.3 245279 246244 R ortholog of Bordetella pertussis (BX470248) BP0561; hypothetical protein complement(245279..246244) Bordetella parapertussis 12822 1668941 NP_882594.1 CDS BPP0235 NC_002928.3 246402 247172 R ortholog of Bordetella pertussis (BX470248) BP0560; hypothetical protein complement(246402..247172) Bordetella parapertussis 12822 1668942 NP_882595.1 CDS BPP0236 NC_002928.3 247357 248598 D ortholog of Bordetella pertussis (BX470248) BP0559; aminotransferase 247357..248598 Bordetella parapertussis 12822 1668943 NP_882596.1 CDS BPP0237 NC_002928.3 248712 249728 D ortholog of Bordetella pertussis (BX470248) BP0558; amino acid-binding periplasmic protein 248712..249728 Bordetella parapertussis 12822 1668944 NP_882597.1 CDS BPP0238 NC_002928.3 249763 250239 R ortholog of Bordetella pertussis (BX470248) BP0557; hypothetical protein complement(249763..250239) Bordetella parapertussis 12822 1668945 NP_882598.1 CDS hmgcL NC_002928.3 250382 251290 R catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase complement(250382..251290) Bordetella parapertussis 12822 1668946 NP_882599.1 CDS smf NC_002928.3 251404 252516 R ortholog of Bordetella pertussis (BX470248) BP0555; hypothetical protein complement(251404..252516) Bordetella parapertussis 12822 1668947 NP_882600.1 CDS lrp NC_002928.3 252617 253180 R ortholog of Bordetella pertussis (BX470248) BP0554; leucine-responsive regulatory protein complement(252617..253180) Bordetella parapertussis 12822 1668948 NP_882601.1 CDS BPP0242 NC_002928.3 253239 254489 D ortholog of Bordetella pertussis (BX470248) BP0553; hypothetical protein 253239..254489 Bordetella parapertussis 12822 1668949 NP_882602.1 CDS def NC_002928.3 254591 255103 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 254591..255103 Bordetella parapertussis 12822 1668950 NP_882603.2 CDS fmt NC_002928.3 255169 256107 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 255169..256107 Bordetella parapertussis 12822 1668951 NP_882604.1 CDS BPP0245 NC_002928.3 256130 256756 R ortholog of Bordetella pertussis (BX470248) BP0550; hypothetical protein complement(256130..256756) Bordetella parapertussis 12822 1668952 NP_882605.1 CDS BPP0246 NC_002928.3 256753 257409 R ortholog of Bordetella pertussis (BX470248) BP0549; haloacid dehalogenase-like hydrolase complement(256753..257409) Bordetella parapertussis 12822 1668953 NP_882606.1 CDS BPP0247 NC_002928.3 257406 258008 R ortholog of Bordetella pertussis (BX470248) BP0548; hypothetical protein complement(257406..258008) Bordetella parapertussis 12822 1668954 NP_882607.1 CDS BPP0248 NC_002928.3 258015 258641 R ortholog of Bordetella pertussis (BX470248) BP0547; lysine decarboxylase complement(258015..258641) Bordetella parapertussis 12822 1668955 NP_882608.1 CDS BPP0249 NC_002928.3 258783 259352 D ortholog of Bordetella pertussis (BX470248) BP0546; bacterioferritin 258783..259352 Bordetella parapertussis 12822 1668956 NP_882609.1 CDS rimO NC_002928.3 259423 260742 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase complement(259423..260742) Bordetella parapertussis 12822 1668957 NP_882610.1 CDS BPP0251 NC_002928.3 260849 261040 R 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase complement(260849..261040) Bordetella parapertussis 12822 1668958 NP_882611.1 CDS BPP0252 NC_002928.3 261292 262665 D ortholog of Bordetella pertussis (BX470248) BP0543; hypothetical protein 261292..262665 Bordetella parapertussis 12822 1668959 NP_882612.1 CDS BPP0253 NC_002928.3 262736 263731 D ortholog of Bordetella pertussis (BX470248) BP0542; hypothetical protein 262736..263731 Bordetella parapertussis 12822 1668960 NP_882613.1 CDS BPP0254 NC_002928.3 263816 264490 D ortholog of Bordetella pertussis (BX470248) BP0541; transcriptional regulator 263816..264490 Bordetella parapertussis 12822 1668961 NP_882614.1 CDS BPP0255 NC_002928.3 264487 265437 R transposase for IS1002 element; IS1002 transposase complement(264487..265437) Bordetella parapertussis 12822 1668962 NP_882615.1 CDS BPP0256 NC_002928.3 265560 266366 R ortholog of Bordetella pertussis (BX470248) BP0566; dioxygenase complement(265560..266366) Bordetella parapertussis 12822 1668963 NP_882616.1 CDS BPP0257 NC_002928.3 266488 267318 D catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis; L-aspartate dehydrogenase 266488..267318 Bordetella parapertussis 12822 1668964 NP_882617.1 CDS BPP0258 NC_002928.3 267364 267993 R ortholog of Bordetella pertussis (BX470248) BP0568; amino acid efflux protein complement(267364..267993) Bordetella parapertussis 12822 1668965 NP_882618.1 CDS BPP0259 NC_002928.3 268011 269435 D ortholog of Bordetella pertussis (BX470248) BP0569; hypothetical protein 268011..269435 Bordetella parapertussis 12822 1664580 NP_882619.1 CDS BPP0260 NC_002928.3 269454 270065 D ortholog of Bordetella pertussis (BX470248) BP0570; hypothetical protein 269454..270065 Bordetella parapertussis 12822 1664581 NP_882620.1 CDS BPP0261 NC_002928.3 270062 272371 D ortholog of Bordetella pertussis (BX470248) BP0571; two-component sensor kinase 270062..272371 Bordetella parapertussis 12822 1668758 NP_882621.1 CDS BPP0262 NC_002928.3 272382 273071 D ortholog of Bordetella pertussis (BX470248) BP0572; two-component response regulator 272382..273071 Bordetella parapertussis 12822 1668768 NP_882622.1 CDS trkA NC_002928.3 273068 274447 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 273068..274447 Bordetella parapertussis 12822 1668769 NP_882623.1 CDS trkH NC_002928.3 274496 275965 D ortholog of Bordetella pertussis (BX470248) BP0574; Trk system potassium uptake protein 274496..275965 Bordetella parapertussis 12822 1668808 NP_882624.1 CDS BPP0265 NC_002928.3 276045 276578 D ortholog of Bordetella pertussis (BX470248) BP0575; MarR family transcriptional regulator 276045..276578 Bordetella parapertussis 12822 1668752 NP_882625.1 CDS BPP0266 NC_002928.3 276586 277581 R ortholog of Bordetella pertussis (BX470248) BP0576; hypothetical protein complement(276586..277581) Bordetella parapertussis 12822 1668763 NP_882626.1 CDS BPP0267 NC_002928.3 277664 278314 D ortholog of Bordetella pertussis (BX470248) BP0577; hypothetical protein 277664..278314 Bordetella parapertussis 12822 1668764 NP_882627.1 CDS BPP0268 NC_002928.3 278637 279599 D ortholog of Bordetella pertussis (BX470248) BP0578; hypothetical protein 278637..279599 Bordetella parapertussis 12822 1668765 NP_882628.1 CDS BPP0270 NC_002928.3 280397 281218 D ortholog of Bordetella pertussis (BX470248) BP0580; hydrolase 280397..281218 Bordetella parapertussis 12822 1668767 NP_882629.1 CDS BPP0271 NC_002928.3 281246 282277 D ortholog of Bordetella pertussis (BX470248) BP0581; hypothetical protein 281246..282277 Bordetella parapertussis 12822 1668791 NP_882630.1 CDS BPP0272 NC_002928.3 282293 282910 D ortholog of Bordetella pertussis (BX470248) BP0582; isochorismatase 282293..282910 Bordetella parapertussis 12822 1668792 NP_882631.1 CDS BPP0273 NC_002928.3 283025 283540 R ortholog of Bordetella pertussis (BX470248) BP0583; ring hydroxylating beta subunit complement(283025..283540) Bordetella parapertussis 12822 1668793 NP_882632.1 CDS BPP0274 NC_002928.3 283555 284844 R ortholog of Bordetella pertussis (BX470248) BP0584; ring hydroxylating alpha subunit complement(283555..284844) Bordetella parapertussis 12822 1668812 NP_882633.1 CDS BPP0275 NC_002928.3 284880 286142 R ortholog of Bordetella pertussis (BX470248) BP0585; ferredoxin reductase complement(284880..286142) Bordetella parapertussis 12822 1668813 NP_882634.1 CDS BPP0276 NC_002928.3 286145 286456 R ortholog of Bordetella pertussis (BX470248) BP0586; ferredoxin complement(286145..286456) Bordetella parapertussis 12822 1668814 NP_882635.1 CDS BPP0277 NC_002928.3 286926 288029 D ortholog of Bordetella pertussis (BX470248) BP0589; hypothetical protein 286926..288029 Bordetella parapertussis 12822 1668815 NP_882636.1 CDS BPP0278 NC_002928.3 288059 290437 D ortholog of Bordetella pertussis (BX470248) BP0590; oxidoreductase, large chain 288059..290437 Bordetella parapertussis 12822 1668818 NP_882637.1 CDS BPP0279 NC_002928.3 290434 291270 D ortholog of Bordetella pertussis (BX470248) BP0591; oxidoreductase, medium chain 290434..291270 Bordetella parapertussis 12822 1668821 NP_882638.1 CDS BPP0280 NC_002928.3 291267 292454 D ortholog of Bordetella pertussis (BX470248) BP0592; iron-sulfur binding protein 291267..292454 Bordetella parapertussis 12822 1668822 NP_882639.1 CDS BPP0282 NC_002928.3 293514 294302 D ortholog of Bordetella pertussis (BX470248) BP0594; ABC transporter ATP-binding protein 293514..294302 Bordetella parapertussis 12822 1668902 NP_882640.1 CDS BPP0283 NC_002928.3 294299 295072 D ortholog of Bordetella pertussis (BX470248) BP0595; ABC transporter permease 294299..295072 Bordetella parapertussis 12822 1668918 NP_882641.1 CDS BPP0284 NC_002928.3 295112 295741 D ortholog of Bordetella pertussis (BX470248) BP0596; hypothetical protein 295112..295741 Bordetella parapertussis 12822 1668922 NP_882642.1 CDS BPP0285 NC_002928.3 295744 297402 D ortholog of Bordetella pertussis (BX470248) BP0597; hypothetical protein 295744..297402 Bordetella parapertussis 12822 1668925 NP_882643.1 CDS BPP0286 NC_002928.3 297753 298994 D ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 297753..298994 Bordetella parapertussis 12822 1668926 NP_882644.1 CDS BPP0287 NC_002928.3 299010 300044 R ortholog of Bordetella pertussis (BX470248) BP0599; hypothetical protein complement(299010..300044) Bordetella parapertussis 12822 1668927 NP_882645.1 CDS BPP0288 NC_002928.3 300141 300755 D ortholog of Bordetella pertussis (BX470248) BP0600; hypothetical protein 300141..300755 Bordetella parapertussis 12822 1668928 NP_882646.1 CDS BPP0289 NC_002928.3 300782 301300 D ortholog of Bordetella pertussis (BX470248) BP0601; rRNA methylase 300782..301300 Bordetella parapertussis 12822 1666168 NP_882647.1 CDS BPP0290 NC_002928.3 301319 302314 R ortholog of Bordetella pertussis (BX470248) BP0602; hypothetical protein complement(301319..302314) Bordetella parapertussis 12822 1666169 NP_882648.1 CDS gpsA NC_002928.3 302369 303424 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(302369..303424) Bordetella parapertussis 12822 1668142 NP_882649.1 CDS secB NC_002928.3 303440 303967 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(303440..303967) Bordetella parapertussis 12822 1668143 NP_882650.1 CDS grxC NC_002928.3 304021 304314 R ortholog of Bordetella pertussis (BX470248) BP0605; glutaredoxin complement(304021..304314) Bordetella parapertussis 12822 1665481 NP_882651.1 CDS BPP0294 NC_002928.3 304315 304737 R ortholog of Bordetella pertussis (BX470248) BP0606; hypothetical protein complement(304315..304737) Bordetella parapertussis 12822 1665482 NP_882652.1 CDS gpmA NC_002928.3 304890 305642 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 304890..305642 Bordetella parapertussis 12822 1666748 NP_882653.1 CDS BPP0296 NC_002928.3 305646 307211 D ortholog of Bordetella pertussis (BX470248) BP0608; peptidase 305646..307211 Bordetella parapertussis 12822 1666749 NP_882654.1 CDS ctpA NC_002928.3 307196 308683 D ortholog of Bordetella pertussis (BX470248) BP0609; carboxy-terminal processing protease precursor 307196..308683 Bordetella parapertussis 12822 1667486 NP_882655.1 CDS thiF NC_002928.3 308680 309474 D ortholog of Bordetella pertussis (BX470248) BP0610; adenylyltransferase 308680..309474 Bordetella parapertussis 12822 1667487 NP_882656.1 CDS BPP0299 NC_002928.3 309611 310306 D ortholog of Bordetella pertussis (BX470248) BP0209; GntR family transcriptional regulator 309611..310306 Bordetella parapertussis 12822 1665531 NP_882657.1 CDS BPP0300 NC_002928.3 310323 311735 D ortholog of Bordetella pertussis (BX470248) BP0208; oxidoreductase 310323..311735 Bordetella parapertussis 12822 1665532 NP_882658.1 CDS thiC NC_002928.3 311834 313747 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(311834..313747) Bordetella parapertussis 12822 1668109 NP_882659.1 CDS BPP0302 NC_002928.3 314066 314632 D ortholog of Bordetella pertussis (BX470248) BP0205; lipoprotein 314066..314632 Bordetella parapertussis 12822 1668110 NP_882660.1 CDS BPP0303 NC_002928.3 314678 315712 D ortholog of Bordetella pertussis (BX470248) BP0204; restriction endonuclease 314678..315712 Bordetella parapertussis 12822 1666827 NP_882661.1 CDS BPP0304 NC_002928.3 315725 317920 R ortholog of Bordetella pertussis (BX470248) BP0740; DNA methylase complement(315725..317920) Bordetella parapertussis 12822 1666828 NP_882662.1 CDS BPP0305 NC_002928.3 317993 318400 R ortholog of Bordetella pertussis (BX470248) BP0741; transcriptional regulator complement(317993..318400) Bordetella parapertussis 12822 1666829 NP_882663.1 CDS BPP0306 NC_002928.3 318540 318983 R ortholog of Bordetella pertussis (BX470248) BP0744; transcriptional regulator complement(318540..318983) Bordetella parapertussis 12822 1666830 NP_882664.1 CDS BPP0307 NC_002928.3 319046 319840 D ortholog of Bordetella pertussis (BX470248) BP0745; transcriptional regulator 319046..319840 Bordetella parapertussis 12822 1668404 NP_882665.1 CDS proB NC_002928.3 320006 321142 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(320006..321142) Bordetella parapertussis 12822 1668405 NP_882666.1 CDS obgE NC_002928.3 321213 322346 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(321213..322346) Bordetella parapertussis 12822 1668406 NP_882667.1 CDS rpmA NC_002928.3 322496 322756 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(322496..322756) Bordetella parapertussis 12822 1668407 NP_882668.1 CDS rplU NC_002928.3 322790 323101 R ortholog of Bordetella pertussis (BX470248) BP0749; 50S ribosomal protein L21 complement(322790..323101) Bordetella parapertussis 12822 1668408 NP_882669.1 CDS BPP0312 NC_002928.3 323478 324674 D ortholog of Bordetella pertussis (BX470248) BP0750; hypothetical protein 323478..324674 Bordetella parapertussis 12822 1668409 NP_882670.1 CDS ispB NC_002928.3 324789 325754 D ortholog of Bordetella pertussis (BX470248) BP0751; octaprenyl-diphosphate synthase 324789..325754 Bordetella parapertussis 12822 1668410 NP_882671.1 CDS BPP0314 NC_002928.3 326022 326894 R ortholog of Bordetella pertussis (BX470248) BP0752; LysR family transcriptional regulator complement(326022..326894) Bordetella parapertussis 12822 1668411 NP_882672.1 CDS hyuB NC_002928.3 329130 331127 D ortholog of Bordetella pertussis (BX470248) BP0754; hydantoin utilization protein B 329130..331127 Bordetella parapertussis 12822 1668414 NP_882673.1 CDS BPP0317 NC_002928.3 331162 332499 D ortholog of Bordetella pertussis (BX470248) BP0755; amino acid deaminase 331162..332499 Bordetella parapertussis 12822 1668415 NP_882674.1 CDS BPP0318 NC_002928.3 332496 333566 D ortholog of Bordetella pertussis (BX470248) BP0756; hypothetical protein 332496..333566 Bordetella parapertussis 12822 1668416 NP_882675.1 CDS gabD NC_002928.3 333621 335102 D ortholog of Bordetella pertussis (BX470248) BP0757; succinate-semialdehyde dehydrogenase 333621..335102 Bordetella parapertussis 12822 1668417 NP_882676.1 CDS cyaC NC_002928.3 335118 335732 R ortholog of Bordetella pertussis (BX470248) BP0758; cyclolysin-activating lysine-acyltransferase complement(335118..335732) Bordetella parapertussis 12822 1668418 NP_882677.1 CDS cyaA NC_002928.3 336053 341275 D ortholog of Bordetella pertussis (BX470248) BP0760; bifunctional hemolysin-adenylate cyclase 336053..341275 Bordetella parapertussis 12822 1668419 NP_882678.1 CDS cyaB NC_002928.3 341280 343487 D ortholog of Bordetella pertussis (BX470248) BP0761; cyclolysin secretion ATP-binding protein 341280..343487 Bordetella parapertussis 12822 1668420 NP_882679.1 CDS cyaD NC_002928.3 343484 344806 D ortholog of Bordetella pertussis (BX470248) BP0762; cyclolysin secretion protein 343484..344806 Bordetella parapertussis 12822 1668421 NP_882680.1 CDS cyaE NC_002928.3 344808 346232 D ortholog of Bordetella pertussis (BX470248) BP0763; cyclolysin secretion protein 344808..346232 Bordetella parapertussis 12822 1668422 NP_882681.1 CDS BPP0326 NC_002928.3 347286 348200 D ortholog of Bordetella pertussis (BX470248) BP0765; extracellular solute-binding protein 347286..348200 Bordetella parapertussis 12822 1668424 NP_882682.1 CDS gltJ NC_002928.3 348284 349042 D ortholog of Bordetella pertussis (BX470248) BP0766; glutamate/aspartate transport system permease 348284..349042 Bordetella parapertussis 12822 1668425 NP_882683.1 CDS gltK NC_002928.3 349039 349722 D ortholog of Bordetella pertussis (BX470248) BP0767; glutamate/aspartate transport system permease 349039..349722 Bordetella parapertussis 12822 1668426 NP_882684.1 CDS gltL NC_002928.3 349739 350482 D ortholog of Bordetella pertussis (BX470248) BP0768; glutamate/aspartate transport ATP-binding protein 349739..350482 Bordetella parapertussis 12822 1668427 NP_882685.1 CDS BPP0330 NC_002928.3 350512 351372 D ortholog of Bordetella pertussis (BX470248) BP0769; aminotransferase 350512..351372 Bordetella parapertussis 12822 1668428 NP_882686.1 CDS BPP0331 NC_002928.3 351380 351946 R ortholog of Bordetella pertussis (BX470248) BP0770; hypothetical protein complement(351380..351946) Bordetella parapertussis 12822 1668429 NP_882687.1 CDS BPP0332 NC_002928.3 352035 352991 R ortholog of Bordetella pertussis (BX470248) BP0771; hypothetical protein complement(352035..352991) Bordetella parapertussis 12822 1668430 NP_882688.1 CDS fabG NC_002928.3 353036 353788 R catalyzes the conversion of 3-hydroxyacyl-CoA to 3-oxyacyl-CoA; acetoacetyl-CoA reductase complement(353036..353788) Bordetella parapertussis 12822 1668431 NP_882689.1 CDS BPP0334 NC_002928.3 353785 355530 R catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; catalytic; acetolactate synthase catalytic subunit complement(353785..355530) Bordetella parapertussis 12822 1668432 NP_882690.1 CDS BPP0335 NC_002928.3 355546 356349 D ortholog of Bordetella pertussis (BX470248) BP0774; GntR family transcriptional regulator 355546..356349 Bordetella parapertussis 12822 1668433 NP_882691.1 CDS BPP0336 NC_002928.3 356357 356533 R Similar to the C-terminal region of Escherichia coli dioxygenase beta subunit YeaX or B1803 SWALL:YEAX_ECOLI (SWALL:P76254) (321 aa) fasta scores: E(): 0.0015, 50% id in 42 aa, and to the C-terminal region of Yersinia pestis dioxygenase beta subunit Ypo2492 SWALL:Q8ZDR4 (EMBL:AJ414152) (321 aa) fasta scores: E(): 0.0036, 50% id in 42 aa; hypothetical protein complement(356357..356533) Bordetella parapertussis 12822 1668434 NP_882692.1 CDS BPP0337 NC_002928.3 356683 357705 D ortholog of Bordetella pertussis (BX470248) BP0775; hypothetical protein 356683..357705 Bordetella parapertussis 12822 1668435 NP_882693.1 CDS BPP0338 NC_002928.3 357717 358439 R ortholog of Bordetella pertussis (BX470248) BP0776; GntR family transcriptional regulator complement(357717..358439) Bordetella parapertussis 12822 1668436 NP_882694.1 CDS BPP0339 NC_002928.3 358584 359591 R ortholog of Bordetella pertussis (BX470248) BP0777; Zinc-binding dehydrogenase complement(358584..359591) Bordetella parapertussis 12822 1668437 NP_882695.1 CDS BPP0340 NC_002928.3 359632 361182 R ortholog of Bordetella pertussis (BX470248) BP0778; acetyl-CoA synthetase complement(359632..361182) Bordetella parapertussis 12822 1668438 NP_882696.1 CDS BPP0341 NC_002928.3 361179 362297 R ortholog of Bordetella pertussis (BX470248) BP0779; hypothetical protein complement(361179..362297) Bordetella parapertussis 12822 1668439 NP_882697.1 CDS BPP0342 NC_002928.3 362294 363076 R ortholog of Bordetella pertussis (BX470248) BP0780; hypothetical protein complement(362294..363076) Bordetella parapertussis 12822 1668440 NP_882698.1 CDS BPP0343 NC_002928.3 363088 363951 R ortholog of Bordetella pertussis (BX470248) BP0781; ABC transporter ATP-binding protein complement(363088..363951) Bordetella parapertussis 12822 1668441 NP_882699.1 CDS BPP0344 NC_002928.3 363970 365067 R ortholog of Bordetella pertussis (BX470248) BP0782; hypothetical protein complement(363970..365067) Bordetella parapertussis 12822 1668442 NP_882700.1 CDS BPP0345 NC_002928.3 365136 366062 R ortholog of Bordetella pertussis (BX470248) BP0783; dioxygenase complement(365136..366062) Bordetella parapertussis 12822 1668443 NP_882701.1 CDS BPP0347 NC_002928.3 367955 368848 R ortholog of Bordetella pertussis (BX470248) BP0785; mechanosensitive channel protein complement(367955..368848) Bordetella parapertussis 12822 1668445 NP_882702.1 CDS BPP0348 NC_002928.3 368996 369907 R Similar to Escherichia coli nitrogen assimilation regulatory protein Nac SWALL:NAC_ECOLI (SWALL:Q47005) (305 aa) fasta scores: E(): 1.1e-32, 40.46% id in 299 aa, and to Ralstonia solanacearum probable nitrogen assimilation regulatory transcription regulator protein RSP0942 SWALL:Q8XRB6 (EMBL:AL646081) (313 aa) fasta scores: E(): 5.3e-37, 43.04% id in 309 aa; LysR family regulatory protein complement(368996..369907) Bordetella parapertussis 12822 1668446 NP_882703.1 CDS BPP0349 NC_002928.3 370025 371206 D Similar to Brucella melitensis alpha-methylacyl-CoA racemase BMEII1076 SWALL:Q8YB25 (EMBL:AE009740) (405 aa) fasta scores: E(): 2.5e-101, 68.71% id in 390 aa, and to Pseudomonas aeruginosa hypothetical protein PA0882 SWALL:Q9I563 (EMBL:AE004522) (400 aa) fasta scores: E(): 5.8e-101, 68.62% id in 392 aa; CAIB/BAIF family protein 370025..371206 Bordetella parapertussis 12822 1668447 NP_882704.1 CDS BPP0350 NC_002928.3 371203 372033 D Similar to Klebsiella pneumoniae citrate lyase beta chain CitE SWALL:CILB_KLEPN (SWALL:P17725) (289 aa) fasta scores: E(): 1.3e-10, 30.63% id in 284 aa, and to Pseudomonas aeruginosa probable acyl-CoA lyase beta chain PA0883 SWALL:Q9I562 (EMBL:AE004522) (275 aa) fasta scores: E(): 4.7e-32, 45.75% id in 271 aa; hypothetical protein 371203..372033 Bordetella parapertussis 12822 1668448 NP_882705.1 CDS BPP0351 NC_002928.3 372046 372837 R Weakly similar to Escherichia coli fatty acyl responsive regulator FarR SWALL:FARR_ECOLI (SWALL:P13669) (240 aa) fasta scores: E(): 1.2e-06, 26.74% id in 243 aa, and to Streptomyces coelicolor transcriptional regulator SCAH10.21 SWALL:Q9RKT6 (EMBL:AL132824) (245 aa) fasta scores: E(): 3.2e-09, 29.41% id in 238 aa; GntR family transcriptional regulator complement(372046..372837) Bordetella parapertussis 12822 1668449 NP_882706.1 CDS BPP0352 NC_002928.3 372839 373402 R Similar to Aquifex aeolicus C-terminal fumarate hydratase, class I AQ_1679 SWALL:O67590 (EMBL:AE000750) (185 aa) fasta scores: E(): 1.6e-32, 49.16% id in 179 aa, and to the C-terminal region of Escherichia coli anaerobic fumarate hydratase class I, FumB SWALL:FUMB_ECOLI (SWALL:P14407) (548 aa) fasta scores: E(): 1.4e-13, 30.72% id in 179 aa; hypothetical protein complement(372839..373402) Bordetella parapertussis 12822 1668450 NP_882707.1 CDS BPP0353 NC_002928.3 373412 374254 R Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase complement(373412..374254) Bordetella parapertussis 12822 1668451 NP_882708.1 CDS BPP0354 NC_002928.3 374320 375294 R Similar to Rhizobium meliloti hypothetical protein SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 7.1e-33, 36.11% id in 324 aa, and to Comamonas testosteroni hypothetical protein Orf4 SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 6.2e-34, 36.11% id in 324 aa; hypothetical protein complement(374320..375294) Bordetella parapertussis 12822 1668452 NP_882709.1 CDS BPP0355 NC_002928.3 375549 376520 R Similar to Alcaligenes eutrophus hypothetical protein SWALL:YGB7_ALCEU (SWALL:Q44018) (327 aa) fasta scores: E(): 1.2e-32, 37.74% id in 310 aa, and to Comamonas testosteroni hypothetical protein OrfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 2e-32, 36.59% id in 317 aa; hypothetical protein complement(375549..376520) Bordetella parapertussis 12822 1668453 NP_882710.1 CDS BPP0356 NC_002928.3 376571 378475 R No significant database matches to the full length CDS. N-terminal region is weakly similar to Rhizobium loti hypothetical protein MLL1717 SWALL:Q98JZ0 (EMBL:AP002998) (292 aa) fasta scores: E(): 3.4e-11, 29.8% id in 255 aa, and to Homo sapiens tartrate-resistant acid phosphatase type 5 precursor ACP5 SWALL:PPA5_HUMAN (SWALL:P13686) (323 aa) fasta scores: E(): 1.3, 24.43% id in 311 aa; hypothetical protein complement(376571..378475) Bordetella parapertussis 12822 1668454 NP_882711.1 CDS BPP0357 NC_002928.3 378544 379353 D Similar to Pectobacterium carotovorum subsp. carotovorum repressor of pathogenesis KdgR SWALL:Q9RB25 (EMBL:AF135395) (263 aa) fasta scores: E(): 2.8e-08, 24.12% id in 257 aa, and to Bordetella pertussis hypothetical protein SWALL:O30445 (EMBL:AF006000) (260 aa) fasta scores: E(): 1e-28, 38% id in 250 aa; transcriptional regulator 378544..379353 Bordetella parapertussis 12822 1668455 NP_882712.1 CDS scoB NC_002928.3 379391 380029 R Similar to Helicobacter pylori succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B ScoB SWALL:SCOB_HELPY (SWALL:P56007) (207 aa) fasta scores: E(): 4.7e-43, 61.3% id in 199 aa, and to Ralstonia solanacearum probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B protein RSC1571 SWALL:Q8XZ35 (EMBL:AL646065) (212 aa) fasta scores: E(): 2.3e-53, 70.53% id in 207 aa; succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B protein complement(379391..380029) Bordetella parapertussis 12822 1668456 NP_882713.1 CDS scoA NC_002928.3 380043 380747 R Similar to Helicobacter pylori succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A ScoA SWALL:SCOA_HELPY (SWALL:P56006) (232 aa) fasta scores: E(): 3.4e-48, 56.71% id in 231 aa, and to Ralstonia solanacearum probable fesuccinyl-CoA:3-ketoacid-coenzyme A transferase subunit A protein RSC1570 SWALL:Q8XZ36 (EMBL:AL646065) (232 aa) fasta scores: E(): 1.8e-62, 71.12% id in 232 aa; succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A complement(380043..380747) Bordetella parapertussis 12822 1668457 NP_882714.1 CDS BPP0360 NC_002928.3 380894 381838 R Similar to Pseudomonas aeruginosa transcriptional regulator PtxR SWALL:PTXR_PSEAE (SWALL:P72131) (312 aa) fasta scores: E(): 1.6e-12, 25.76% id in 295 aa, and to Brucella melitensis LysR family transcriptional regulatory protein BMEI0218 SWALL:Q8YJ68 (EMBL:AE009464) (308 aa) fasta scores: E(): 1.7e-31, 36.17% id in 293 aa; LysR family regulatory protein complement(380894..381838) Bordetella parapertussis 12822 1668458 NP_882715.1 CDS BPP0361 NC_002928.3 381992 382807 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 381992..382807 Bordetella parapertussis 12822 1668459 NP_882716.1 CDS BPP0362 NC_002928.3 382822 383712 D Similar to Rattus norvegicus 3-hydroxyisobutyrate dehydrogenase, mitochondrial precursor HIBADH SWALL:D3HI_RAT (SWALL:P29266) (335 aa) fasta scores: E(): 9.8e-21, 33.45% id in 278 aa, and to Rhizobium meliloti oxidoreductase SMC00274 SWALL:Q92PN5 (EMBL:AL591788) (295 aa) fasta scores: E(): 1.3e-23, 34.01% id in 294 aa; hypothetical protein 382822..383712 Bordetella parapertussis 12822 1668460 NP_882717.1 CDS BPP0363 NC_002928.3 383802 385010 D Similar to Pseudomonas aeruginosa leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor BraC SWALL:BRAC_PSEAE (SWALL:P21175) (373 aa) fasta scores: E(): 1.5e-12, 23.63% id in 347 aa, and to Ralstonia solanacearum probable leucine-specific binding precursor transmembrane protein RS02149 SWALL:Q8XPP6 (EMBL:AL646085) (380 aa) fasta scores: E(): 6.6e-14, 25.39% id in 378 aa; hypothetical protein 383802..385010 Bordetella parapertussis 12822 1668461 NP_882718.1 CDS BPP0364 NC_002928.3 385046 385921 D Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport system permease BraD SWALL:BRAD_PSEAE (SWALL:P21627) (307 aa) fasta scores: E(): 3.6e-22, 34.12% id in 296 aa, and to Rhizobium meliloti probable high-affinity branched-chain amino acid transport permease ABC transporter protein SMC01951 SWALL:Q92MX1 (EMBL:AL591790) (300 aa) fasta scores: E(): 3.4e-21, 30.43% id in 299 aa; branched-chain amino acid ABC transporter permease 385046..385921 Bordetella parapertussis 12822 1666113 NP_882719.1 CDS BPP0365 NC_002928.3 385914 386858 D Similar to Brucella melitensis high-affinity branched-chain amino acid transport system permease BMEII0101 SWALL:Q8YDS4 (EMBL:AE009648) (315 aa) fasta scores: E(): 3.1e-18, 30.59% id in 304 aa, and to Rhizobium loti ABC transporter, permease MLR9036 SWALL:Q982J5 (EMBL:AP003015) (311 aa) fasta scores: E(): 1.2e-18, 30.03% id in 303 aa. Possible alternative translational start site; branched-chain amino acid ABC transporter permease 385914..386858 Bordetella parapertussis 12822 1668462 NP_882720.1 CDS BPP0366 NC_002928.3 386867 387601 D Similar to Aeropyrum pernix hypothetical high-affinity branched-chain amino acid transport ATP-binding protein APE2524 SWALL:Q9Y8W0 (EMBL:AP000064) (242 aa) fasta scores: E(): 5e-28, 42.5% id in 240 aa, and to Rhizobium loti branched-chain amino acid ABC transporter, ATP-binding protein MLL4886 SWALL:Q98D29 (EMBL:AP003005) (241 aa) fasta scores: E(): 1.1e-25, 41.59% id in 238 aa; ABC transporter ATP-binding protein 386867..387601 Bordetella parapertussis 12822 1668463 NP_882721.1 CDS BPP0367 NC_002928.3 387591 388313 D Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraG SWALL:BRAG_PSEAE (SWALL:P21630) (233 aa) fasta scores: E(): 1.6e-29, 46.35% id in 233 aa, and to Thermotoga maritima branched chain amino acid ABC transporter, ATP-binding protein TM1139 SWALL:Q9X0M3 (EMBL:AE001771) (239 aa) fasta scores: E(): 4.1e-34, 48.73% id in 238 aa; ABC transporter ATP-binding protein 387591..388313 Bordetella parapertussis 12822 1668464 NP_882722.1 CDS BPP0368 NC_002928.3 388362 389123 D Similar to Pseudomonas paucimobilis 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinC SWALL:LINC_PSEPA (SWALL:P50197) (250 aa) fasta scores: E(): 2.5e-22, 35.96% id in 253 aa, and to Rhizobium meliloti hypothetical protein SMA0339 SWALL:Q930L3 (EMBL:AE007211) (257 aa) fasta scores: E(): 3.3e-27, 42.8% id in 250 aa; short chain dehydrogenase 388362..389123 Bordetella parapertussis 12822 1668465 NP_882723.1 CDS BPP0369 NC_002928.3 389141 389431 D Similar to Agrobacterium tumefaciens str. C58 conserved hypothetical protein ATU0777 SWALL:AAL41793 (EMBL:AE009045) (102 aa) fasta scores: E(): 0.0033, 26.26% id in 99 aa, and to Rhizobium loti hypothetical protein MLR3059 SWALL:Q98H26 (EMBL:AP003001) (105 aa) fasta scores: E(): 0.13, 31.25% id in 80 aa; hypothetical protein 389141..389431 Bordetella parapertussis 12822 1668466 NP_882724.1 CDS BPP0370 NC_002928.3 389466 390248 D Similar to Escherichia coli oxidoreductase UcpA SWALL:UCPA_ECOLI (SWALL:P37440) (263 aa) fasta scores: E(): 7e-15, 32.31% id in 263 aa, and to Bacillus halodurans 3-oxoacyl-(acyl-carrier protein) reductase BH0932 SWALL:Q9KEC1 (EMBL:AP001510) (252 aa) fasta scores: E(): 6.3e-19, 32.15% id in 255 aa; short chain dehydrogenase 389466..390248 Bordetella parapertussis 12822 1668467 NP_882725.1 CDS BPP0371 NC_002928.3 390264 391415 D Similar to Enterobacter cloacae pentaerythritol tetranitrate reductase Onr SWALL:P71278 (EMBL:U68759) (365 aa) fasta scores: E(): 1e-20, 31.51% id in 349 aa, and to Pseudomonas aeruginosa probable FMN oxidoreductase PA3723 SWALL:Q9HXR8 (EMBL:AE004791) (368 aa) fasta scores: E(): 9.6e-60, 49.72% id in 358 aa; NADH:flavin oxidoreductase / NADH oxidase 390264..391415 Bordetella parapertussis 12822 1668468 NP_882726.1 CDS BPP0372 NC_002928.3 391665 392420 D Similar to Ralstonia solanacearum probable lipoprotein transmembrane RSC0146 SWALL:Q8Y335 (EMBL:AL646057) (251 aa) fasta scores: E(): 1.4e-59, 58.56% id in 251 aa, and to Brucella melitensis membrane protein BMEI1842 SWALL:Q8YEN6 (EMBL:AE009618) (263 aa) fasta scores: E(): 3.4e-22, 32.4% id in 250 aa; hypothetical protein 391665..392420 Bordetella parapertussis 12822 1668469 NP_882727.1 CDS BPP0373 NC_002928.3 392755 393204 D Similar to Rhizobium meliloti hypothetical protein SMB20026 SWALL:Q92XD3 (EMBL:AL603642) (153 aa) fasta scores: E(): 3.4e-08, 30.82% id in 146 aa, and to Agrobacterium tumefaciens hypothetical protein AGR_PAT_474P SWALL:AAK90705 (EMBL:AE007902) (154 aa) fasta scores: E(): 2.7e-07, 32.87% id in 146 aa; hypothetical protein 392755..393204 Bordetella parapertussis 12822 1668470 NP_882728.1 CDS BPP0374 NC_002928.3 393217 394734 D Similar to Ralstonia solanacearum probable transmembrane protein RSC0793 SWALL:Q8Y197 (EMBL:AL646061) (500 aa) fasta scores: E(): 1.7e-96, 51.91% id in 497 aa, and to Rhizobium meliloti hypothetical protein SMB20027 SWALL:Q92XD2 (EMBL:AL603642) (501 aa) fasta scores: E(): 1.1e-95, 52.13% id in 493 aa; hypothetical protein 393217..394734 Bordetella parapertussis 12822 1668471 NP_882729.1 CDS BPP0375 NC_002928.3 394815 396188 R Two-component regulatory system family, sensor kinase. Similar to Escherichia coli sensor kinase CusS SWALL:CUSS_ECOLI (SWALL:P77485) (480 aa) fasta scores: E(): 1e-16, 27.5% id in 480 aa, and to Rhizobium loti two-component sensor MLL5777 SWALL:Q98B08 (EMBL:AP003007) (460 aa) fasta scores: E(): 2.4e-33, 31.79% id in 456 aa; sensor kinase complement(394815..396188) Bordetella parapertussis 12822 1668548 NP_882730.1 CDS BPP0376 NC_002928.3 396185 396898 R Two-component regulatory system family, response regulator protein. Similar to Escherichia coli transcriptional regulatory protein PcoR SWALL:PCOR_ECOLI (SWALL:Q47456) (226 aa) fasta scores: E(): 1.1e-32, 44.84% id in 223 aa, and to Brucella melitensis two component response regulator BMEI1329 SWALL:Q8YG33 (EMBL:AE009571) (235 aa) fasta scores: E(): 7.2e-45, 53.3% id in 227 aa; transcriptional regulatory protein complement(396185..396898) Bordetella parapertussis 12822 1668549 NP_882731.1 CDS BPP0377 NC_002928.3 397477 398073 D Similar to Rhizobium meliloti hypothetical protein SMA0431 SWALL:Q930G9 (EMBL:AE007216) (197 aa) fasta scores: E(): 4.4e-36, 54.35% id in 195 aa, and to Agrobacterium tumefaciens str. C58 conserved hypothetical protein ATU6081 SWALL:AAL46317 (EMBL:AE009427) (197 aa) fasta scores: E(): 5.9e-19, 40.33% id in 181 aa; hypothetical protein 397477..398073 Bordetella parapertussis 12822 1668550 NP_882732.1 CDS BPP0378 NC_002928.3 398066 399082 D Similar to Rhizobium meliloti hypothetical protein SMA0429 SWALL:Q930H0 (EMBL:AE007216) (338 aa) fasta scores: E(): 1.9e-64, 51.32% id in 339 aa, and to Agrobacterium tumefaciens str. C58 conserved hypothetical protein ATU5044 SWALL:AAL45736 (EMBL:AE008929) (375 aa) fasta scores: E(): 6.1e-05, 30.64% id in 372 aa; hypothetical protein 398066..399082 Bordetella parapertussis 12822 1668551 NP_882733.1 CDS BPP0379 NC_002928.3 399399 399680 D Similar to enteropathogenic Escherichia coli adherence factor plasmid hypothetical protein Orf80 SWALL:Q9S0Y9 (EMBL:AB024946) (95 aa) fasta scores: E(): 1.4e-07, 33.33% id in 84 aa, and to Salmonella typhimurium ABC-type transport system STM2904 SWALL:Q8ZMH5 (EMBL:AE008832) (96 aa) fasta scores: E(): 7.5e-06, 36.78% id in 87 aa; hypothetical protein 399399..399680 Bordetella parapertussis 12822 1668552 NP_882734.1 CDS BPP0380 NC_002928.3 399677 400198 D Similar to Ralstonia solanacearum hypothetical protein RS02184 SWALL:Q8XPL3 (EMBL:AL646086) (163 aa) fasta scores: E(): 7.3e-21, 45.09% id in 153 aa, and to Rhizobium meliloti hypothetical protein SMC04221 SWALL:Q92P92 (EMBL:AL591788) (174 aa) fasta scores: E(): 2.4e-17, 42.3% id in 156 aa; acetyltransferase (GNAT) family protein 399677..400198 Bordetella parapertussis 12822 1668553 NP_882735.1 CDS hemA NC_002928.3 400707 401981 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 400707..401981 Bordetella parapertussis 12822 1668555 NP_882736.1 CDS prfA NC_002928.3 402068 403150 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 402068..403150 Bordetella parapertussis 12822 1668556 NP_882737.1 CDS hemK NC_002928.3 403161 403973 D ortholog of Bordetella pertussis (BX470248) BP0679; heme biosynthesis protein 403161..403973 Bordetella parapertussis 12822 1668557 NP_882738.1 CDS BPP0384 NC_002928.3 404011 404337 D ortholog of Bordetella pertussis (BX470248) BP0680; hypothetical protein 404011..404337 Bordetella parapertussis 12822 1668558 NP_882739.1 CDS BPP0385 NC_002928.3 404342 404902 D catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 404342..404902 Bordetella parapertussis 12822 1668559 NP_882740.1 CDS BPP0386 NC_002928.3 405144 406136 D ortholog of Bordetella pertussis (BX470248) BP0682; hypothetical protein 405144..406136 Bordetella parapertussis 12822 1668560 NP_882741.1 CDS BPP0387 NC_002928.3 406155 407150 D ortholog of Bordetella pertussis (BX470248) BP0683; 4,5-dihydroxyphthalate decarboxylase 406155..407150 Bordetella parapertussis 12822 1668561 NP_882742.1 CDS BPP0388 NC_002928.3 407166 408035 D ortholog of Bordetella pertussis (BX470248) BP0684; molybdopterin dehydrogenase 407166..408035 Bordetella parapertussis 12822 1668562 NP_882743.1 CDS BPP0389 NC_002928.3 408032 408541 D ortholog of Bordetella pertussis (BX470248) BP0684A; 2Fe-2S ferredoxin 408032..408541 Bordetella parapertussis 12822 1668563 NP_882744.1 CDS BPP0391 NC_002928.3 410959 411684 D ortholog of Bordetella pertussis (BX470248) BP0686; hypothetical protein 410959..411684 Bordetella parapertussis 12822 1668564 NP_882745.1 CDS BPP0392 NC_002928.3 411860 412954 R ortholog of Bordetella pertussis (BX470248) BP3435; hypothetical protein complement(411860..412954) Bordetella parapertussis 12822 1668565 NP_882746.1 CDS BPP0394 NC_002928.3 413935 414459 R ortholog of Bordetella pertussis (BX470248) BP3433; hypothetical protein complement(413935..414459) Bordetella parapertussis 12822 1668567 NP_882747.1 CDS cysI NC_002928.3 414452 416194 R ortholog of Bordetella pertussis (BX470248) BP3432; sulfite reductase complement(414452..416194) Bordetella parapertussis 12822 1668568 NP_882748.1 CDS BPP0396 NC_002928.3 416535 417080 D Similar to Rhizobium loti hypothetical protein Mll6832 SWALL:Q988A1 (EMBL:AP003010) (220 aa) fasta scores: E(): 2.7e-18, 38.15% id in 173 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1154 SWALL:Q9I4I3 (EMBL:AE004545) (177 aa) fasta scores: E(): 2.2e-06, 26.87% id in 160 aa; hypothetical protein 416535..417080 Bordetella parapertussis 12822 1668569 NP_882749.1 CDS BPP0397 NC_002928.3 417145 417903 R ortholog of Bordetella pertussis (BX470248) BP3431; branched-chain amino acid ABC transporter ATP-binding protein complement(417145..417903) Bordetella parapertussis 12822 1668570 NP_882750.1 CDS BPP0398 NC_002928.3 417906 418613 R ortholog of Bordetella pertussis (BX470248) BP3430; branched-chain amino acid ABC transporter ATP-binding protein complement(417906..418613) Bordetella parapertussis 12822 1668571 NP_882751.1 CDS BPP0399 NC_002928.3 418630 419511 R ortholog of Bordetella pertussis (BX470248) BP3429; branched-chain amino acid ABC transporter permease complement(418630..419511) Bordetella parapertussis 12822 1668572 NP_882752.1 CDS BPP0400 NC_002928.3 419522 420511 R ortholog of Bordetella pertussis (BX470248) BP3428; branched-chain amino acid ABC transporter permease complement(419522..420511) Bordetella parapertussis 12822 1668573 NP_882753.1 CDS BPP0401 NC_002928.3 420614 421531 R Similar to Rhizobium meliloti transcriptional regulator, LysR family protein Rb1494 or Smb20582 SWALL:Q92TL7 (EMBL:AL603647) (306 aa) fasta scores: E(): 1.1e-28, 32.89% id in 301 aa, and to Ralstonia solanacearum probable transcription regulator protein Rsc2497 or Rs01099 SWALL:Q8XWH7 (EMBL:AL646070) (321 aa) fasta scores: E(): 1.2e-23, 31.57% id in 285 aa; LysR family transcriptional regulator complement(420614..421531) Bordetella parapertussis 12822 1668574 NP_882754.1 CDS BPP0402 NC_002928.3 421653 422885 D ortholog of Bordetella pertussis (BX470248) BP3427; branched-chain amino acid binding protein 421653..422885 Bordetella parapertussis 12822 1668575 NP_882755.1 CDS BPP0403 NC_002928.3 422900 424372 D ortholog of Bordetella pertussis (BX470248) BP3426; amidase 422900..424372 Bordetella parapertussis 12822 1668576 NP_882756.1 CDS BPP0404 NC_002928.3 424394 425044 R ortholog of Bordetella pertussis (BX470248) BP3425; carbonic anhydrase complement(424394..425044) Bordetella parapertussis 12822 1668577 NP_882757.1 CDS BPP0405 NC_002928.3 425178 425522 R ortholog of Bordetella pertussis (BX470248) BP3424; hypothetical protein complement(425178..425522) Bordetella parapertussis 12822 1668578 NP_882758.1 CDS psiF NC_002928.3 425762 426085 D ortholog of Bordetella pertussis (BX470248) BP0227; phosphate starvation-inducible protein precursor 425762..426085 Bordetella parapertussis 12822 1668579 NP_882759.1 CDS BPP0407 NC_002928.3 426243 427292 R ortholog of Bordetella pertussis (BX470248) BP0226; hypothetical protein complement(426243..427292) Bordetella parapertussis 12822 1668580 NP_882760.1 CDS catD2 NC_002928.3 427289 428113 R ortholog of Bordetella pertussis (BX470248) BP0225; 3-oxoadipate enol-lactone hydrolase complement(427289..428113) Bordetella parapertussis 12822 1668581 NP_882761.1 CDS BPP0409 NC_002928.3 428114 428410 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(428114..428410) Bordetella parapertussis 12822 1668582 NP_882762.1 CDS catC2 NC_002928.3 428436 428711 R ortholog of Bordetella pertussis (BX470248) BP0223; methylmuconolactone isomerase complement(428436..428711) Bordetella parapertussis 12822 1668583 NP_882763.1 CDS catJ NC_002928.3 428768 429412 R ortholog of Bordetella pertussis (BX470248) BP0222; 3-oxoadipate CoA-transferase subunit B complement(428768..429412) Bordetella parapertussis 12822 1668584 NP_882764.1 CDS catI NC_002928.3 429412 430098 R ortholog of Bordetella pertussis (BX470248) BP0221; 3-oxoadipate CoA-transferase subunit A complement(429412..430098) Bordetella parapertussis 12822 1668585 NP_882765.1 CDS BPP0413 NC_002928.3 430228 431079 D ortholog of Bordetella pertussis (BX470248) BP0220; transcriptional regulator 430228..431079 Bordetella parapertussis 12822 1668586 NP_882766.1 CDS BPP0414 NC_002928.3 431130 431855 R ortholog of Bordetella pertussis (BX470248) BP0219; short-chain dehydrogenase complement(431130..431855) Bordetella parapertussis 12822 1668587 NP_882767.1 CDS BPP0415 NC_002928.3 431888 433321 R ortholog of Bordetella pertussis (BX470248) BP0218; short-chain fatty acids transporter complement(431888..433321) Bordetella parapertussis 12822 1668588 NP_882768.1 CDS BPP0416 NC_002928.3 433341 434405 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(433341..434405) Bordetella parapertussis 12822 1668589 NP_882769.1 CDS sphB1 NC_002928.3 434671 437466 R ortholog of Bordetella pertussis (BX470248) BP0216; autotransporter subtilisin-like protease complement(434671..437466) Bordetella parapertussis 12822 1667355 NP_882770.1 CDS ppc NC_002928.3 438072 441020 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(438072..441020) Bordetella parapertussis 12822 1668590 NP_882771.1 CDS BPP0419 NC_002928.3 441077 441811 D ortholog of Bordetella pertussis (BX470248) BP0214; hypothetical protein 441077..441811 Bordetella parapertussis 12822 1668591 NP_882772.1 CDS BPP0420 NC_002928.3 441850 442398 R ortholog of Bordetella pertussis (BX470248) BP0213; acetyltransferase complement(441850..442398) Bordetella parapertussis 12822 1668592 NP_882773.1 CDS BPP0421 NC_002928.3 442553 443452 D ortholog of Bordetella pertussis (BX470248) BP0212; hydrolase 442553..443452 Bordetella parapertussis 12822 1668593 NP_882774.1 CDS BPP0422 NC_002928.3 443477 444103 R ortholog of Bordetella pertussis (BX470248) BP0282; regulatory protein complement(443477..444103) Bordetella parapertussis 12822 1668594 NP_882775.1 CDS BPP0423 NC_002928.3 444126 445052 R ortholog of Bordetella pertussis (BX470248) BP0283; 2-hydroxyacid dehydrogenase complement(444126..445052) Bordetella parapertussis 12822 1668595 NP_882776.1 CDS BPP0424 NC_002928.3 445061 446647 R ortholog of Bordetella pertussis (BX470248) BP0284; extracellular solute-binding protein complement(445061..446647) Bordetella parapertussis 12822 1668596 NP_882777.1 CDS BPP0425 NC_002928.3 446644 447648 R ortholog of Bordetella pertussis (BX470248) BP0285; acetyl esterase complement(446644..447648) Bordetella parapertussis 12822 1668597 NP_882778.1 CDS BPP0426 NC_002928.3 447848 448708 D ortholog of Bordetella pertussis (BX470248) BP0286; transcriptional regulator 447848..448708 Bordetella parapertussis 12822 1668598 NP_882779.1 CDS leuA NC_002928.3 448740 449741 R ortholog of Bordetella pertussis (BX470248) BP0287; hypothetical protein complement(448740..449741) Bordetella parapertussis 12822 1668599 NP_882780.1 CDS BPP0428 NC_002928.3 449812 450576 D ortholog of Bordetella pertussis (BX470248) BP0288; transcriptional regulator 449812..450576 Bordetella parapertussis 12822 1668600 NP_882781.1 CDS ilvD NC_002928.3 450654 452513 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 450654..452513 Bordetella parapertussis 12822 1668601 NP_882782.1 CDS BPP0430 NC_002928.3 452572 453909 R ortholog of Bordetella pertussis (BX470248) BP0292; hypothetical protein complement(452572..453909) Bordetella parapertussis 12822 1668602 NP_882783.1 CDS BPP0431 NC_002928.3 454039 454599 R ortholog of Bordetella pertussis (BX470248) BP0294; 5'(3')-deoxyribonucleotidase complement(454039..454599) Bordetella parapertussis 12822 1668603 NP_882784.1 CDS BPP0432 NC_002928.3 454659 455246 R Similar to Escherichia coli 2'-5' RNA ligase LigT SWALL:LIGT_ECOLI (SWALL:P37025) (175 aa) fasta scores: E(): 5.4e-10, 34.3% id in 172 aa, and to Pseudomonas aeruginosa 2'-5' RNA ligase PA2861 SWALL:Q9HZY3 (EMBL:AE004712) (182 aa) fasta scores: E(): 1.4e-10, 38.69% id in 168 aa. Possible alternative translational start site; 2'-5' RNA ligase complement(454659..455246) Bordetella parapertussis 12822 1668604 NP_882785.1 CDS BPP0433 NC_002928.3 455434 456945 R Similar to Pseudomonas aeruginosa outer membrane protein precursor involved in siderophore transport and resistance to antimicrobial agents, OprM or OprK SWALL:OPRM_PSEAE (SWALL:Q51487) (485 aa) fasta scores: E(): 8.6e-40, 37.6% id in 476 aa, and to Ralstonia solanacearum outer membrane drug efflux lipoprotein RS02156 SWALL:Q8XPN9 (EMBL:AL646086) (483 aa) fasta scores: E(): 2.4e-56, 41.71% id in 489 aa; hypothetical protein complement(455434..456945) Bordetella parapertussis 12822 1668605 NP_882786.1 CDS BPP0434 NC_002928.3 456960 460121 R Similar to Escherichia coli probable aminoglycoside efflux pump AcrD SWALL:ACRD_ECOLI (SWALL:P24177) (1037 aa) fasta scores: E(): 8e-155, 42.39% id in 1052 aa, and to Ralstonia solanacearum probable transmembrane multidrug-efflux system lipoprotein transmembrane RS02621 SWALL:Q8XQV5 (EMBL:AL646082) (1069 aa) fasta scores: E(): 0, 77.45% id in 1051 aa; multidrug-efflux system protein complement(456960..460121) Bordetella parapertussis 12822 1668606 NP_882787.1 CDS BPP0435 NC_002928.3 460138 461319 R Similar to Escherichia coli acriflavine resistance protein A precursor AcrA or MtcA or Lir SWALL:ACRA_ECOLI (SWALL:P31223) (397 aa) fasta scores: E(): 3.6e-28, 30.64% id in 385 aa, and to Ralstonia solanacearum probable transmembrane multidrug efflux system transmembrane protein RS02620 SWALL:Q8XQV6 (EMBL:AL646082) (438 aa) fasta scores: E(): 6.4e-81, 62.46% id in 381 aa; HlyD family secretion protein complement(460138..461319) Bordetella parapertussis 12822 1668607 NP_882788.1 CDS BPP0436 NC_002928.3 461563 462585 D Similar to Burkholderia cepacia transcriptional regulator CeoR SWALL:Q8VL17 (EMBL:AY008288) (334 aa) fasta scores: E(): 8.4e-77, 60.24% id in 322 aa, and to Ralstonia solanacearum probable transcription regulator protein RS02618 SWALL:Q8XQV8 (EMBL:AL646082) (315 aa) fasta scores: E(): 8.9e-67, 57.42% id in 303 aa; LysR family regulatory protein 461563..462585 Bordetella parapertussis 12822 1668608 NP_882789.1 CDS BPP0437 NC_002928.3 462794 463897 D ortholog of Bordetella pertussis (BX470248) BP3604; hypothetical protein 462794..463897 Bordetella parapertussis 12822 1668609 NP_882790.1 CDS BPP0438 NC_002928.3 463984 464748 D ortholog of Bordetella pertussis (BX470248) BP3605; hypothetical protein 463984..464748 Bordetella parapertussis 12822 1668610 NP_882791.1 CDS BPP0439 NC_002928.3 464870 466060 D ortholog of Bordetella pertussis (BX470248) BP3606; voltage-gated potassium channel 464870..466060 Bordetella parapertussis 12822 1668611 NP_882792.1 CDS BPP0440 NC_002928.3 466068 466463 R ortholog of Bordetella pertussis (BX470248) BP0518; hypothetical protein complement(466068..466463) Bordetella parapertussis 12822 1668612 NP_882793.1 CDS BPP0441 NC_002928.3 466633 467334 D ortholog of Bordetella pertussis (BX470248) BP0519; glutathione S-transferase 466633..467334 Bordetella parapertussis 12822 1668613 NP_882794.1 CDS BPP0443 NC_002928.3 467598 468458 D ortholog of Bordetella pertussis (BX470248) BP0520; hypothetical protein 467598..468458 Bordetella parapertussis 12822 1668614 NP_882795.1 CDS BPP0444 NC_002928.3 468534 468884 R ortholog of Bordetella pertussis (BX470248) BP0521; hypothetical protein complement(468534..468884) Bordetella parapertussis 12822 1668615 NP_882796.1 CDS BPP0445 NC_002928.3 469010 470095 R ortholog of Bordetella pertussis (BX470248) BP0522; metal-activated pyridoxal enzyme complement(469010..470095) Bordetella parapertussis 12822 1668616 NP_882797.1 CDS BPP0446 NC_002928.3 470185 470844 R ortholog of Bordetella pertussis (BX470248) BP0523; haloacid dehalogenase complement(470185..470844) Bordetella parapertussis 12822 1668617 NP_882798.1 CDS BPP0447 NC_002928.3 470936 471844 D ortholog of Bordetella pertussis (BX470248) BP0524; transcriptional regulator 470936..471844 Bordetella parapertussis 12822 1668618 NP_882799.1 CDS BPP0448 NC_002928.3 471841 472035 D ortholog of Bordetella pertussis (BX470248) BP0525; integrase (remnant) 471841..472035 Bordetella parapertussis 12822 1668619 NP_882800.1 CDS BPP0449 NC_002928.3 472347 477197 D Similar to the C-terminal region of Brucella melitensis extracellular serine protease BMEII0148 SWALL:Q8YDM7 (EMBL:AE009653) (2554 aa) fasta scores: E(): 4.4e-51, 28.75% id in 1833 aa. C-terminal region is similar to Escherichia coli adhesin precursor AIDA-I SWALL:AIDA_ECOLI (SWALL:Q03155) (1286 aa) fasta scores: E(): 3.4e-19, 24.02% id in 1382 aa. CDS contains an internal imperfect repeat region; autotransporter 472347..477197 Bordetella parapertussis 12822 1668620 NP_882801.1 CDS BPP0450 NC_002928.3 477282 477443 D ortholog of Bordetella pertussis (BX470248) BP0526; hypothetical protein 477282..477443 Bordetella parapertussis 12822 1668621 NP_882802.1 CDS ecnA1 NC_002928.3 477475 477606 D ortholog of Bordetella pertussis (BX470248) BP0527; entericidin A anti-toxin 477475..477606 Bordetella parapertussis 12822 1668622 NP_882803.1 CDS BPP0452 NC_002928.3 478053 483362 D ortholog of Bordetella pertussis (BX470248) BP0529; autotransporter 478053..483362 Bordetella parapertussis 12822 1668623 NP_882804.1 CDS BPP0453 NC_002928.3 483396 483995 D ortholog of Bordetella pertussis (BX470248) BP0530; hypothetical protein 483396..483995 Bordetella parapertussis 12822 1668624 NP_882805.1 CDS BPP0454 NC_002928.3 484307 485284 D ortholog of Bordetella pertussis (BX470248) BP0531; hypothetical protein 484307..485284 Bordetella parapertussis 12822 1668625 NP_882806.1 CDS BPP0455 NC_002928.3 485298 486872 D ortholog of Bordetella pertussis (BX470248) BP0532; substrate-CoA ligase 485298..486872 Bordetella parapertussis 12822 1668626 NP_882807.1 CDS BPP0456 NC_002928.3 486850 487620 D ortholog of Bordetella pertussis (BX470248) BP0533; transcriptional regulator 486850..487620 Bordetella parapertussis 12822 1668627 NP_882808.1 CDS BPP0457 NC_002928.3 487644 488408 D ortholog of Bordetella pertussis (BX470248) BP0534; enoyl-CoA hydratase/isomerase 487644..488408 Bordetella parapertussis 12822 1668628 NP_882809.1 CDS BPP0458 NC_002928.3 488453 488788 D ortholog of Bordetella pertussis (BX470248) BP0535; carboxymuconolactone decarboxylase 488453..488788 Bordetella parapertussis 12822 1668629 NP_882810.1 CDS BPP0459 NC_002928.3 488842 489822 D ortholog of Bordetella pertussis (BX470248) BP0536; hypothetical protein 488842..489822 Bordetella parapertussis 12822 1668630 NP_882811.1 CDS BPP0460 NC_002928.3 489923 490945 D Similar to Ralstonia solanacearum oxidoreductase RS00208 SWALL:Q8XVE0 (EMBL:AL646072) (338 aa) fasta scores: E(): 1.7e-73, 65.1% id in 321 aa, and to Pichia stipitis alcohol dehydrogenase I ADH1 SWALL:ADH1_PICST (SWALL:O00097) (348 aa) fasta scores: E(): 2e-08, 27.55% id in 323 aa; zinc-binding dehydrogenase 489923..490945 Bordetella parapertussis 12822 1668631 NP_882812.1 CDS BPP0461 NC_002928.3 491037 492290 D ortholog of Bordetella pertussis (BX470248) BP0438; hypothetical protein 491037..492290 Bordetella parapertussis 12822 1668632 NP_882813.1 CDS BPP0462 NC_002928.3 492268 493230 R ortholog of Bordetella pertussis (BX470248) BP0437; LysR family transcriptional regulator complement(492268..493230) Bordetella parapertussis 12822 1668633 NP_882814.1 CDS BPP0463 NC_002928.3 493383 493859 D ortholog of Bordetella pertussis (BX470248) BP0436; hypothetical protein 493383..493859 Bordetella parapertussis 12822 1668634 NP_882815.1 CDS BPP0464 NC_002928.3 493856 495088 D ortholog of Bordetella pertussis (BX470248) BP0435; dehydratase/racemase 493856..495088 Bordetella parapertussis 12822 1668635 NP_882816.1 CDS BPP0465 NC_002928.3 495152 496117 D ortholog of Bordetella pertussis (BX470248) BP0434; hypothetical protein 495152..496117 Bordetella parapertussis 12822 1668636 NP_882817.1 CDS BPP0466 NC_002928.3 496104 497093 R ortholog of Bordetella pertussis (BX470248) BP0433; LysR family transcriptional regulator complement(496104..497093) Bordetella parapertussis 12822 1668637 NP_882818.1 CDS BPP0467 NC_002928.3 497237 497641 D ortholog of Bordetella pertussis (BX470248) BP0432; hypothetical protein 497237..497641 Bordetella parapertussis 12822 1668638 NP_882819.1 CDS BPP0469 NC_002928.3 501223 502686 D ortholog of Bordetella pertussis (BX470248) BP0430; short-chain fatty acids transporter 501223..502686 Bordetella parapertussis 12822 1668640 NP_882820.1 CDS BPP0470 NC_002928.3 502834 503478 D ortholog of Bordetella pertussis (BX470248) BP0428; GntR family transcriptional regulator 502834..503478 Bordetella parapertussis 12822 1668701 NP_882821.1 CDS BPP0471 NC_002928.3 503508 503945 R ortholog of Bordetella pertussis (BX470248) BP0427; hypothetical protein complement(503508..503945) Bordetella parapertussis 12822 1668702 NP_882822.1 CDS cspA NC_002928.3 505453 505656 D ortholog of Bordetella pertussis (BX470248) BP0426; cold shock protein 505453..505656 Bordetella parapertussis 12822 1668703 NP_882823.1 CDS BPP0473 NC_002928.3 505833 506738 D ortholog of Bordetella pertussis (BX470248) BP0425; LysR family transcriptional regulator 505833..506738 Bordetella parapertussis 12822 1668704 NP_882824.1 CDS BPP0474 NC_002928.3 506764 507738 R Similar to Variovorax paradoxus 2,4-diphenoxyacetic acid gene cluster hypothetical protein SWALL:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 3.1e-37, 39.04% id in 315 aa, and to Comamonas testosteroni hypothetical protein Orf4 SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 7.4e-35, 36% id in 325 aa; hypothetical protein complement(506764..507738) Bordetella parapertussis 12822 1668705 NP_882825.1 CDS BPP0475 NC_002928.3 507749 509338 R Similar to Rhizobium loti choline sulfatase MLL7612 SWALL:Q985M3 (EMBL:AP003012) (509 aa) fasta scores: E(): 4.6e-77, 44.15% id in 496 aa, and to Pseudomonas aeruginosa choline sulfatase BetC or PA0031 SWALL:Q9I799 (EMBL:AE004442) (503 aa) fasta scores: E(): 2.7e-81, 46.24% id in 493 aa; sulfatase complement(507749..509338) Bordetella parapertussis 12822 1668706 NP_882826.1 CDS BPP0476 NC_002928.3 509346 510386 R Similar to Alcaligenes eutrophus hypothetical protein MacB SWALL:Q9RBG2 (EMBL:AF130250) (340 aa) fasta scores: E(): 1.8e-34, 39.26% id in 326 aa, and to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.8e-31, 32.92% id in 325 aa; hypothetical protein complement(509346..510386) Bordetella parapertussis 12822 1668707 NP_882827.1 CDS BPP0477 NC_002928.3 510662 511669 D Similar to Ralstonia sp. U2 hypothetical protein NagM SWALL:Q9Z3X3 (EMBL:AF036940) (341 aa) fasta scores: E(): 5.7e-36, 36.52% id in 334 aa, and to Rhizobium meliloti hypothetical protein RA1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 4e-30, 33.43% id in 323 aa; hypothetical protein 510662..511669 Bordetella parapertussis 12822 1668708 NP_882828.1 CDS BPP0478 NC_002928.3 511727 513376 D Similar to Methanosarcina acetivorans str C2A exoenzymes regulatory protein AepA SWALL:AAM04201 (EMBL:AE010738) (553 aa) fasta scores: E(): 2.7e-36, 29.89% id in 572 aa, and to Mycobacterium tuberculosis hypothetical protein RV0552 or MT0578 or Mtcy25d10.31 SWALL:O06418 (EMBL:Z95558) (572 aa) fasta scores: E(): 5.2e-26, 29.29% id in 553 aa; hypothetical protein 511727..513376 Bordetella parapertussis 12822 1668709 NP_882829.1 CDS BPP0479 NC_002928.3 513373 514383 D Similar to Pseudomonas denitrificans protein CobW SWALL:COBW_PSEDE (SWALL:P29937) (353 aa) fasta scores: E(): 4.7e-12, 29.85% id in 335 aa, and to Anabaena sp hypothetical protein All1751 all1751 SWALL:Q8YW65 (EMBL:AP003587) (323 aa) fasta scores: E(): 3.1e-21, 30.12% id in 332 aa; hypothetical protein 513373..514383 Bordetella parapertussis 12822 1668710 NP_882830.1 CDS BPP0480 NC_002928.3 514514 515665 R Similar to Streptomyces fradiae deoxyallosyl-transferase TylN SWALL:O70023 (EMBL:AJ005397) (422 aa) fasta scores: E(): 5e-25, 31.04% id in 393 aa, and to Calothrix viguieri hypothetical protein SWALL:O52939 (EMBL:Y09899) (305 aa) fasta scores: E(): 1.3e-27, 37.5% id in 296 aa; hypothetical protein complement(514514..515665) Bordetella parapertussis 12822 1668711 NP_882831.1 CDS BPP0481 NC_002928.3 515731 516354 R Similar to Deinococcus radiodurans transcriptional repressor, TetR family Dr1402 SWALL:Q9RUI4 (EMBL:AE001985) (208 aa) fasta scores: E(): 2.9e-09, 29.46% id in 207 aa, and to Streptomyces coelicolor TetR-family regulatory protein Scc53.10 SWALL:Q9KXK1 (EMBL:AL357591) (250 aa) fasta scores: E(): 2.8e-07, 30.28% id in 208 aa; TetR family transcriptional regulator complement(515731..516354) Bordetella parapertussis 12822 1668712 NP_882832.1 CDS BPP0482 NC_002928.3 516506 516709 D No significant database matches. Doubtful CDS; hypothetical protein 516506..516709 Bordetella parapertussis 12822 1668713 NP_882833.1 CDS BPP0483 NC_002928.3 517060 517650 D Poor database matches. Similar to the N-terminal region of Bacteriophage P4 nonessential protein cII SWALL:RCII_BPP4 (SWALL:P13059) (264 aa) fasta scores: E(): 0.00065, 25.13% id in 183 aa; hypothetical protein 517060..517650 Bordetella parapertussis 12822 1668714 NP_882834.1 CDS BPP0484 NC_002928.3 517612 518643 R Poor database matches. N-terminal region is similar to an internal region of Streptococcus salivarius glucosyltransferase precursor GtfM SWALL:Q55265 (EMBL:L35928) (1577 aa) fasta scores: E(): 0.42, 20.97% id in 286 aa; hypothetical protein complement(517612..518643) Bordetella parapertussis 12822 1668715 NP_882835.1 CDS BPP0485 NC_002928.3 518678 519541 R Poor database matches. C-terminal region is similar to C-terminus of Xylella fastidiosa hypothetical protein XF1708 SWALL:Q9PCS0 (EMBL:AE003994) (371 aa) fasta scores: E(): 8.4e-18, 33.8% id in 213 aa; plasmid-like protein complement(518678..519541) Bordetella parapertussis 12822 1668716 NP_882836.1 CDS BPP0486 NC_002928.3 519858 520166 R hypothetical protein complement(519858..520166) Bordetella parapertussis 12822 1668717 NP_882837.1 CDS BPP0486a NC_002928.3 520357 520581 R Similar to Bacillus subtilis hypothetical protein Orf13 SWALL:Q9X3Z9 (EMBL:AF091592) (55 aa) fasta scores: E(): 0.22, 41.66% id in 36 aa, and to the C-terminal region of Rhizobium meliloti hypothetical protein SWALL:Q91UM4 (EMBL:AJ304453) (110 aa) fasta scores: E(): 1.3e-11, 58.9% id in 73 aa; plasmid-like protein complement(520357..520581) Bordetella parapertussis 12822 1668718 NP_882838.1 CDS BPP0487 NC_002928.3 520700 520996 R Poor database matches. Similar to the C-terminal region of Streptomyces coelicolor hypothetical protein SC1A9.25c SWALL:Q9ZBS7 (EMBL:AL034446) (129 aa) fasta scores: E(): 0.52, 30.43% id in 92 aa; hypothetical protein complement(520700..520996) Bordetella parapertussis 12822 1668719 NP_882839.1 CDS BPP0488 NC_002928.3 521064 521819 R Poor database matches. Internal region is similar to the C-terminal region of Escherichia coli plasmid hypothetical protein VirB6 SWALL:Q91UX1 (EMBL:AJ297913) (360 aa) fasta scores: E(): 2.7e-12, 48.18% id in 110 aa; plasmid-like protein complement(521064..521819) Bordetella parapertussis 12822 1668720 NP_882840.1 CDS BPP0489 NC_002928.3 521841 522215 D No significant database matches to the full length CDS. Similar to the C-terminal regions of Escherichia coli serine/threonine protein phosphatase 1 PphA or PrpA SWALL:PRP1_ECOLI (SWALL:P55798) (218 aa) fasta scores: E(): 0.00078, 33.33% id in 102 aa, and Bacteriophage lambda serine/threonine protein phosphatase SWALL:PP_LAMBD (SWALL:P03772) (221 aa) fasta scores: E(): 0.016, 27.45% id in 102 aa; hypothetical protein 521841..522215 Bordetella parapertussis 12822 1668721 NP_882841.1 CDS BPP0490 NC_002928.3 522859 523929 D Poor database matches. Similar to the N-terminal regions of Bacillus stearothermophilus DNA primase DnaG SWALL:PRIM_BACST (SWALL:Q9X4D0) (597 aa) fasta scores: E(): 7.9e-08, 26.62% id in 353 aa, and to Neisseria meningitidis DNA primase NMA1736 SWALL:PRIM_NEIMA (SWALL:P57028) (590 aa) fasta scores: E(): 5.9e-08, 25.41% id in 362 aa; DNA primase 522859..523929 Bordetella parapertussis 12822 1668722 NP_882842.1 CDS BPP0491 NC_002928.3 523892 525238 D Poor database matches. N-terminus is similar to the N-terminal region of Bacillus halodurans transposase BH0224 SWALL:Q9KG88 (EMBL:AP001507) (418 aa) fasta scores: E(): 2, 25.42% id in 118 aa; hypothetical protein 523892..525238 Bordetella parapertussis 12822 1668723 NP_882843.1 CDS BPP0492 NC_002928.3 525245 527143 D hypothetical protein 525245..527143 Bordetella parapertussis 12822 1668724 NP_882844.1 CDS BPP0493 NC_002928.3 527161 528087 D Poor database matches. Similar to Bacillus halodurans hypothetical protein BH1047 SWALL:Q9KE11 (EMBL:AP001510) (271 aa) fasta scores: E(): 0.18, 22.17% id in 257 aa; hypothetical protein 527161..528087 Bordetella parapertussis 12822 1668725 NP_882845.1 CDS BPP0494 NC_002928.3 528255 528695 R hypothetical protein complement(528255..528695) Bordetella parapertussis 12822 1668726 NP_882846.1 CDS BPP0495 NC_002928.3 528774 529124 R No significant database matches to the full length CDS. Similar to the C-terminal region of Ralstonia solanacearum integrase/recombinase RS05241 SWALL:Q8XZ52 (EMBL:AL646065) (354 aa) fasta scores: E(): 0.026, 42.3% id in 78 aa; integrase complement(528774..529124) Bordetella parapertussis 12822 1668727 NP_882847.1 CDS htpG NC_002928.3 529634 531541 D molecular chaperone; heat shock protein 90 529634..531541 Bordetella parapertussis 12822 1668728 NP_882848.1 CDS BPP0497 NC_002928.3 531831 532451 R ortholog of Bordetella pertussis (BX470248) BP0075; glutathione S-transferase complement(531831..532451) Bordetella parapertussis 12822 1668729 NP_882849.1 CDS ampD NC_002928.3 532483 533064 R ortholog of Bordetella pertussis (BX470248) BP0076; N-acetyl-anhydromuranmyl-L-alanine amidase complement(532483..533064) Bordetella parapertussis 12822 1668730 NP_882850.1 CDS BPP0499 NC_002928.3 533150 533401 R ortholog of Bordetella pertussis (BX470248) BP0077; hypothetical protein complement(533150..533401) Bordetella parapertussis 12822 1668731 NP_882851.1 CDS BPP0500 NC_002928.3 533403 534326 R ortholog of Bordetella pertussis (BX470248) BP0078; hypothetical protein complement(533403..534326) Bordetella parapertussis 12822 1668732 NP_882852.1 CDS ffh NC_002928.3 534351 535760 D ortholog of Bordetella pertussis (BX470248) BP0079; signal recognition particle protein 534351..535760 Bordetella parapertussis 12822 1668733 NP_882853.1 CDS BPP0502 NC_002928.3 535893 536444 R ortholog of Bordetella pertussis (BX470248) BP3689; LysM domain/BON superfamily protein complement(535893..536444) Bordetella parapertussis 12822 1668734 NP_882854.1 CDS BPP0503 NC_002928.3 536484 536684 R ortholog of Bordetella pertussis (BX470248) BP3690; hypothetical protein complement(536484..536684) Bordetella parapertussis 12822 1668735 NP_882855.1 CDS BPP0504 NC_002928.3 536695 537642 R ortholog of Bordetella pertussis (BX470248) BP3691; prolyl iminopeptidase complement(536695..537642) Bordetella parapertussis 12822 1668736 NP_882856.1 CDS trmB NC_002928.3 537643 538473 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(537643..538473) Bordetella parapertussis 12822 1668301 NP_882857.1 CDS BPP0506 NC_002928.3 538500 539399 D ortholog of Bordetella pertussis (BX470248) BP3693; LysR family regulatory protein 538500..539399 Bordetella parapertussis 12822 1668737 NP_882858.1 CDS BPP0507 NC_002928.3 539443 540708 D ortholog of Bordetella pertussis (BX470248) BP3694; hypothetical protein 539443..540708 Bordetella parapertussis 12822 1668738 NP_882859.1 CDS BPP0508 NC_002928.3 540705 541652 D ortholog of Bordetella pertussis (BX470248) BP3695; hydroxymethylglutaryl-CoA lyase 540705..541652 Bordetella parapertussis 12822 1668739 NP_882860.1 CDS BPP0509 NC_002928.3 541700 542695 D ortholog of Bordetella pertussis (BX470248) BP3696; hypothetical protein 541700..542695 Bordetella parapertussis 12822 1668740 NP_882861.1 CDS BPP0510 NC_002928.3 543029 543370 R ortholog of Bordetella pertussis (BX470248) BP3697; hypothetical protein complement(543029..543370) Bordetella parapertussis 12822 1668741 NP_882862.1 CDS BPP0511 NC_002928.3 543562 544359 D Similar to Escherichia coli acetate operon repressor IclR SWALL:ICLR_ECOLI (SWALL:P16528) (274 aa) fasta scores: E(): 1.4e-07, 26.86% id in 201 aa, and to Streptomyces coelicolor transcriptional regulator SCAH10.11c SWALL:Q9RKU6 (EMBL:AL132824) (270 aa) fasta scores: E(): 1.8e-11, 31.86% id in 204 aa; transcriptional regulator 543562..544359 Bordetella parapertussis 12822 1668742 NP_882863.1 CDS BPP0512 NC_002928.3 544400 545581 D Similar to Burkholderia sp. TH2. 2-halobenzoate dioxygenase large subunit CbdA SWALL:Q9AJR2 (EMBL:AB035324) (465 aa) fasta scores: E(): 5.9e-19, 25.58% id in 383 aa, and to Methylosulfonomonas methylovora hydroxylase alpha subunit MsmA SWALL:Q9X404 (EMBL:AF091716) (414 aa) fasta scores: E(): 2.2e-48, 42.04% id in 402 aa; dioxygenase subunit 544400..545581 Bordetella parapertussis 12822 1668743 NP_882864.1 CDS BPP0513 NC_002928.3 545639 546097 D ortholog of Bordetella pertussis (BX470248) BP0070; Weakly similar to Marinosulfonomonas methylotropha hydroxylase beta subunit SWALL:Q93NZ6 (EMBL:AF354805) (181 aa) fasta scores: E(): 8.7e-05, 26.25% id in 160 aa, and to Pseudomonas aeruginosa ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA SWALL:Q9Z5W2 (EMBL:AF121970) (176 aa) fasta scores: E(): 0.0079, 22.06% id in 145 aa; hydroxylase 545639..546097 Bordetella parapertussis 12822 1668744 NP_882865.1 CDS BPP0514 NC_002928.3 546118 547299 D ortholog of Bordetella pertussis (BX470248) BP0069; hypothetical protein 546118..547299 Bordetella parapertussis 12822 1668745 NP_882866.1 CDS BPP0515 NC_002928.3 547360 547896 D ortholog of Bordetella pertussis (BX470248) BP0068; hypothetical protein 547360..547896 Bordetella parapertussis 12822 1668144 NP_882867.1 CDS BPP0517 NC_002928.3 549234 550292 D ortholog of Bordetella pertussis (BX470248) BP0066; oxidoreductase 549234..550292 Bordetella parapertussis 12822 1668412 NP_882868.1 CDS BPP0518 NC_002928.3 550393 550710 D ortholog of Bordetella pertussis (BX470248) BP0065; ferredoxin 550393..550710 Bordetella parapertussis 12822 1668168 NP_882869.1 CDS BPP0519 NC_002928.3 550723 551304 D ortholog of Bordetella pertussis (BX470248) BP0064; hypothetical protein 550723..551304 Bordetella parapertussis 12822 1668169 NP_882870.1 CDS BPP0520 NC_002928.3 551361 552335 D ortholog of Bordetella pertussis (BX470248) BP0063; hypothetical protein 551361..552335 Bordetella parapertussis 12822 1668170 NP_882871.1 CDS BPP0521 NC_002928.3 552366 >552719 R ortholog of Bordetella pertussis (BX470248) BP0063A; transposase (partial) complement(552366..>552719) Bordetella parapertussis 12822 1664648 NP_882872.1 CDS BPP0522 NC_002928.3 552759 553700 D ortholog of Bordetella pertussis (BX470248) BP0062; No significant database matches to the full length CDS. N-terminus is similar to the C-terminal region of Rhizobium loti aminotransferase MLR6024 SWALL:Q98AF4 (EMBL:AP003008) (429 aa) fasta scores: E(): 5.4, 27.51% id in 149 aa; hypothetical protein 552759..553700 Bordetella parapertussis 12822 1664649 NP_882873.1 CDS BPP0523 NC_002928.3 553890 554303 D ortholog of Bordetella pertussis (BX470248) BP0061; DNA-binding protein 553890..554303 Bordetella parapertussis 12822 1664650 NP_882874.1 CDS BPP0524 NC_002928.3 554339 555529 D ortholog of Bordetella pertussis (BX470248) BP0060; hypothetical protein 554339..555529 Bordetella parapertussis 12822 1664651 NP_882875.1 CDS BPP0525 NC_002928.3 555673 556602 R ortholog of Bordetella pertussis (BX470248) BP0059; regulatory protein complement(555673..556602) Bordetella parapertussis 12822 1664652 NP_882876.1 CDS BPP0526 NC_002928.3 556722 557705 D Similar to Rhizobium meliloti hypothetical protein SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 4.9e-34, 35.47% id in 327 aa, and to Comamonas testosteroni hypothetical protein OrfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.4e-32, 38.39% id in 323 aa; hypothetical protein 556722..557705 Bordetella parapertussis 12822 1666087 NP_882877.1 CDS BPP0527 NC_002928.3 557702 559834 D Similar to Pseudomonas mendocina pimeloyl-CoA synthetase SWALL:Q9ZER2 (EMBL:AJ012480) (711 aa) fasta scores: E(): 5.1e-67, 34.83% id in 709 aa, and to Pseudomonas aeruginosa pimeloyl-CoA synthetase PA1017 SWALL:Q9I4V6 (EMBL:AE004534) (715 aa) fasta scores: E(): 2.9e-68, 35% id in 720 aa; acyl-CoA synthetase 557702..559834 Bordetella parapertussis 12822 1666088 NP_882878.1 CDS BPP0528 NC_002928.3 559831 560616 D Similar to Rhodococcus fascians enoyl CoA hydratase EchA1 SWALL:Q9ZHG2 (EMBL:AF063588) (275 aa) fasta scores: E(): 3.4e-26, 39.25% id in 242 aa, and to Mycobacterium tuberculosis hypothetical protein Rv0222 SWALL:P96404 (EMBL:Z92669) (262 aa) fasta scores: E(): 1.4e-26, 40.63% id in 251 aa; enoyl-CoA hydratase/isomerase 559831..560616 Bordetella parapertussis 12822 1666089 NP_882879.1 CDS BPP0529 NC_002928.3 560692 561669 D Similar to Comamonas testosteroni hypothetical protein Orf4 SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 1.3e-37, 39.14% id in 304 aa, and to Comamonas acidovorans hypothetical protein SWALL:AAL86583 (EMBL:AY078159) (336 aa) fasta scores: E(): 5.5e-33, 37.86% id in 309 aa; hypothetical protein 560692..561669 Bordetella parapertussis 12822 1667041 NP_882880.1 CDS BPP0530 NC_002928.3 562130 562678 D hypothetical protein 562130..562678 Bordetella parapertussis 12822 1667042 NP_882881.1 CDS BPP0531 NC_002928.3 562747 563739 D Similar to Comamonas testosteroni hypothetical protein Orf4 SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 3.8e-32, 36.85% id in 331 aa, and to Rhizobium meliloti hypothetical protein SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.2e-30, 35.31% id in 320 aa; hypothetical protein 562747..563739 Bordetella parapertussis 12822 1667043 NP_882882.1 CDS BPP0532 NC_002928.3 563789 565378 D Poor database matches to the full length CDS. Similar to Pseudomonas aeruginosa probable thiosulfate sulfurtransferase PA2603 SWALL:Q9I0N4 (EMBL:AE004689) (527 aa) fasta scores: E(): 9.6e-68, 44.46% id in 515 aa. N-terminus is similar to the N-terminal region of Agrobacterium tumefaciens hypothetical protein AGR_PTI_BX104 SWALL:AAL46325 (EMBL:AE009427) (395 aa) fasta scores: E(): 1.7e-39, 44.95% id in 307 aa; sulfurtransferase 563789..565378 Bordetella parapertussis 12822 1665410 NP_882883.1 CDS BPP0533 NC_002928.3 565419 566309 D Similar to Agrobacterium tumefaciens, octopine catabolism/uptake operon regulatory protein OccR SWALL:OCCR_AGRTU (SWALL:Q00679) (298 aa) fasta scores: E(): 1.1e-22, 34.44% id in 299 aa, and to Agrobacterium tumefaciens nopaline catabolism/uptake operon regulatory protein NocR SWALL:NOCR_AGRT5 (SWALL:Q00678) (300 aa) fasta scores: E(): 6.1e-21, 30.61% id in 294 aa; LysR family regulatory protein 565419..566309 Bordetella parapertussis 12822 1667044 NP_882884.1 CDS BPP0534 NC_002928.3 566306 568012 D Similar to Escherichia coli acetolactate synthase isozyme III large subunit IlvI SWALL:ILVI_ECOLI (SWALL:P00893) (574 aa) fasta scores: E(): 1e-34, 28.54% id in 557 aa, and to Archaeoglobus fulgidus acetolactate synthase, large subunit AF2100 SWALL:O28180 (EMBL:AE000958) (575 aa) fasta scores: E(): 2.7e-42, 31.5% id in 565 aa. Possible alternative translational start site; hypothetical protein 566306..568012 Bordetella parapertussis 12822 1668029 NP_882885.1 CDS BPP0536 NC_002928.3 569356 570126 D Similar to Clostridium acetobutylicum 3-hydroxybutyryl-CoA dehydratase Crt SWALL:CRT_CLOAB (SWALL:P52046) (261 aa) fasta scores: E(): 2.9e-16, 28.57% id in 238 aa, and to Bacillus subtilis hydroxybutyryl-dehydratase FenO SWALL:Q9L7W1 (EMBL:AF218939) (260 aa) fasta scores: E(): 3.2e-17, 31.96% id in 244 aa; enoyl-CoA hydratase/isomerase 569356..570126 Bordetella parapertussis 12822 1667313 NP_882886.1 CDS BPP0537 NC_002928.3 570175 571161 D Similar to Rhizobium meliloti hypothetical protein SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 3e-35, 35.73% id in 319 aa, and to Variovorax paradoxus and Burkholderia cepacia 2,4-diphenoxyacetic acid gene cluster hypothetical protein SWALL:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 1.4e-32, 33.43% id in 326 aa; hypothetical protein 570175..571161 Bordetella parapertussis 12822 1667314 NP_882887.1 CDS BPP0538 NC_002928.3 571119 571970 D Similar to Salmonella typhimurium acetate operon repressor IclR SWALL:ICLR_SALTY (SWALL:P17430) (274 aa) fasta scores: E(): 5.4e-06, 26.77% id in 254 aa, and to Rhizobium meliloti transcription regulator protein SMC00263 SWALL:Q92PP5 (EMBL:AL591788) (282 aa) fasta scores: E(): 7.1e-18, 31.49% id in 254 aa; transcriptional regulator 571119..571970 Bordetella parapertussis 12822 1667315 NP_882888.1 CDS BPP0539 NC_002928.3 571995 572957 R Similar to Agrobacterium tumefaciens hypothetical protein AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 6.8e-46, 44.58% id in 323 aa, and to Rhizobium meliloti hypothetical protein SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 4.8e-44, 42.33% id in 326 aa; hypothetical protein complement(571995..572957) Bordetella parapertussis 12822 1667316 NP_882889.1 CDS BPP0541 NC_002928.3 573387 574559 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(573387..574559) Bordetella parapertussis 12822 1665970 NP_882890.1 CDS BPP0542 NC_002928.3 574603 576303 R C-terminal region is similar to Solanum tuberosum 4-coumarate--CoA ligase 2 4CL2 or 4CL-2 SWALL:4CL2_SOLTU (SWALL:P31685) (545 aa) fasta scores: E(): 1.2e-36, 29.63% id in 513 aa, and to Streptomyces coelicolor ligase SC5G9.20 SWALL:Q9RL07 (EMBL:AL117385) (518 aa) fasta scores: E(): 1.2e-60, 38.72% id in 501 aa; ligase complement(574603..576303) Bordetella parapertussis 12822 1665971 NP_882891.1 CDS BPP0543 NC_002928.3 576328 577344 D Similar to Bacillus subtilis degradation activator DegA SWALL:DEGA_BACSU (SWALL:P37947) (337 aa) fasta scores: E(): 1.8e-24, 29.08% id in 337 aa, and to Streptomyces coelicolor probable LacI-family transcriptional regulator SCC57A.16 SWALL:Q9RDI2 (EMBL:AL136519) (347 aa) fasta scores: E(): 1.9e-30, 32.73% id in 336 aa; LacI family regulatory protein 576328..577344 Bordetella parapertussis 12822 1665972 NP_882892.1 CDS BPP0544 NC_002928.3 577512 577850 D N-terminal region is similar to Yersinia pestis osmotically inducible lipoprotein B Osmb SWALL:Q8ZEE4 (EMBL:AJ414151) (71 aa) fasta scores: E(): 3.4e-06, 55.07% id in 69 aa. Full length CDS is similar to Agrobacterium tumefaciens AGR_PAT_235P SWALL:AAK90545 (EMBL:AE007888) (102 aa) fasta scores: E(): 0.051, 36.89% id in 103 aa; hypothetical protein 577512..577850 Bordetella parapertussis 12822 1665761 NP_882893.1 CDS BPP0545 NC_002928.3 578107 579528 R Poor database matches. Weakly similar to Salmonella typhimurium 2-methylcitrate dehydratase PrpD SWALL:PRPD_SALTY (SWALL:P74840) (483 aa) fasta scores: E(): 0.047, 24.4% id in 459 aa, and to Mycobacterium smegmatis hypothetical protein SWALL:Q938D1 (EMBL:AY054120) (477 aa) fasta scores: E(): 8.1e-14, 24.52% id in 469 aa; hypothetical protein complement(578107..579528) Bordetella parapertussis 12822 1665763 NP_882894.1 CDS BPP0546 NC_002928.3 579528 580610 R Similar to Bacillus subtilis sorbitol dehydrogenase GutB SWALL:DHSO_BACSU (SWALL:Q06004) (352 aa) fasta scores: E(): 5.1e-15, 32.17% id in 345 aa, and to Mycobacterium tuberculosis alcohol dehydrogenase Adh MTV045.04 SWALL:O53904 (EMBL:AL022000) (367 aa) fasta scores: E(): 1.2e-41, 39.61% id in 361 aa; Zinc-binding dehydrogenase complement(579528..580610) Bordetella parapertussis 12822 1665764 NP_882895.1 CDS BPP0547 NC_002928.3 580842 581744 D Similar to Mycobacterium smegmatis carboxy-phosphonoenolpyruvate mutase SWALL:Q938D0 (EMBL:AY054120) (296 aa) fasta scores: E(): 2.7e-16, 32.76% id in 293 aa. N-terminus is similar to the N-terminal region of Streptomyces hygroscopicus carboxyvinyl-carboxyphosphonate phosphorylmutase BcpA SWALL:CPPM_STRHY (SWALL:P11435) (294 aa) fasta scores: E(): 2.6e-13, 32.15% id in 227 aa; hypothetical protein 580842..581744 Bordetella parapertussis 12822 1665818 NP_882896.1 CDS BPP0548 NC_002928.3 581769 582134 D C-terminus is similar to the C-terminal region of Yersinia pestis decarboxylase YPO1999 SWALL:Q8ZEZ7 (EMBL:AJ414151) (140 aa) fasta scores: E(): 2.3e-18, 56.84% id in 95 aa, and Ralstonia solanacearum probable 4-carboxymuconolactone decarboxylase RSP1472 SWALL:Q8XQ14 (EMBL:AL646085) (108 aa) fasta scores: E(): 4.9e-17, 50.96% id in 104 aa; carboxymuconolactone decarboxylase 581769..582134 Bordetella parapertussis 12822 1665819 NP_882897.1 CDS BPP0549 NC_002928.3 582182 582952 R Similar to Escherichia coli probable enoyl-CoA hydratase PaaF SWALL:PAAF_ECOLI (SWALL:P76082) (255 aa) fasta scores: E(): 2.8e-19, 35.27% id in 241 aa, and to Caulobacter crescentus enoyl-CoA hydratase/isomerase cc0006 SWALL:Q9AC55 (EMBL:AE005675) (262 aa) fasta scores: E(): 1.5e-23, 36.61% id in 254 aa; enoyl-CoA hydratase/isomerase complement(582182..582952) Bordetella parapertussis 12822 1665820 NP_882898.1 CDS BPP0550 NC_002928.3 582999 584186 R Similar to Bacillus subtilis alcohol dehydrogenase GbsB SWALL:GBSB_BACSU (SWALL:P71017) (402 aa) fasta scores: E(): 8.9e-18, 27.57% id in 388 aa, and to Brucella melitensis alcohol dehydrogenase BMEII0553 SWALL:Q8YCH6 (EMBL:AE009691) (389 aa) fasta scores: E(): 1.4e-19, 26.91% id in 379 aa; iron-containing alcohol dehydrogenase complement(582999..584186) Bordetella parapertussis 12822 1665821 NP_882899.1 CDS BPP0551 NC_002928.3 584236 585504 R C-terminal region is similar to Agrobacterium tumefaciens L-carnitine dehydratase CaiB SWALL:AAL43117 (EMBL:AE009163) (397 aa) fasta scores: E(): 4.7e-49, 39.48% id in 385 aa, and to the C-terminal region of Brucella melitensis formyl-coenzyme A transferase BMEII0224 SWALL:Q8YDF2 (EMBL:AE009661) (454 aa) fasta scores: E(): 1.1e-54, 44.41% id in 376 aa; CaiB/BaiF family protein complement(584236..585504) Bordetella parapertussis 12822 1665088 NP_882900.1 CDS BPP0552 NC_002928.3 585717 586928 D Similar to Mus musculus alpha-methylacyl-CoA racemase AMACR or MACR1 SWALL:AMAC_MOUSE (SWALL:O09174) (380 aa) fasta scores: E(): 2.7e-61, 47.38% id in 382 aa, and to Streptomyces coelicolor racemase SC5f2A.13 SWALL:Q9X7N6 (EMBL:AL049587) (398 aa) fasta scores: E(): 6.1e-75, 53.88% id in 386 aa; racemase 585717..586928 Bordetella parapertussis 12822 1665089 NP_882901.1 CDS BPP0553 NC_002928.3 587134 588099 D Similar to Rhizobium meliloti hypothetical protein SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.4e-31, 34.3% id in 309 aa, and to Comamonas testosteroni hypothetical protein OrfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.7e-28, 35.58% id in 326 aa; hypothetical protein 587134..588099 Bordetella parapertussis 12822 1665090 NP_882902.1 CDS BPP0554 NC_002928.3 588153 589040 R Similar to Escherichia coli cyn operon transcriptional activator CynR SWALL:CYNR_ECOLI (SWALL:P27111) (311 aa) fasta scores: E(): 5e-16, 26.95% id in 282 aa, and to Rhizobium meliloti transcriptional regulator protein SMB20123 SWALL:Q92X39 (EMBL:AL603642) (298 aa) fasta scores: E(): 3.3e-19, 30.71% id in 293 aa; LysR family regulatory protein complement(588153..589040) Bordetella parapertussis 12822 1665091 NP_882903.1 CDS BPP0555 NC_002928.3 589149 589859 R Similar to Agrobacterium tumefaciens hypothetical protein AGR_L_563 SWALL:AAL45388 (EMBL:AE009387) (228 aa) fasta scores: E(): 1.9e-13, 35.89% id in 195 aa; hypothetical protein complement(589149..589859) Bordetella parapertussis 12822 1664585 NP_882904.1 CDS BPP0556 NC_002928.3 589912 590892 R Similar to Rhizobium meliloti hypothetical protein SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 5.4e-41, 40.55% id in 323 aa, and to Agrobacterium tumefaciens hypothetical protein AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 4.9e-37, 38.43% id in 320 aa; hypothetical protein complement(589912..590892) Bordetella parapertussis 12822 1664586 NP_882905.1 CDS BPP0557 NC_002928.3 591219 592385 D Similar to Homo sapiens mitochondrial, short-chain specific, acyl-CoA dehydrogenase ACADS SWALL:ACDS_HUMAN (SWALL:P16219) (412 aa) fasta scores: E(): 2.5e-39, 34.03% id in 382 aa, and to Bacillus halodurans acyl-CoA dehydrogenase BH3798 SWALL:Q9K6D1 (EMBL:AP001520) (380 aa) fasta scores: E(): 4.3e-42, 34.1% id in 387 aa. CDS is shorter at the N-terminus in comparison to the human protein; acyl-CoA dehydrogenase 591219..592385 Bordetella parapertussis 12822 1664587 NP_882906.1 CDS BPP0558 NC_002928.3 592504 593484 D Similar to Comamonas testosteroni hypothetical protein OrfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 2.9e-36, 38.78% id in 330 aa, and to Pseudomonas chlororaphis hypothetical protein SWALL:Q9L3W5 (EMBL:AJ271325) (336 aa) fasta scores: E(): 3.5e-33, 37.5% id in 320 aa; hypothetical protein 592504..593484 Bordetella parapertussis 12822 1665837 NP_882907.1 CDS BPP0559 NC_002928.3 593579 594115 R Similar to Archaeoglobus fulgidus 3-isopropylmalate dehydratase small subunit AF1761 SWALL:LE24_ARCFU (SWALL:O28513) (165 aa) fasta scores: E(): 4.8e-17, 34.96% id in 163 aa, and to Pyrococcus furiosus DSM 3638 3-isopropylmalate dehydratase small subunit PF0939 SWALL:AAL81063 (EMBL:AE010207) (164 aa) fasta scores: E(): 1.8e-16, 32.72% id in 165 aa; hypothetical protein complement(593579..594115) Bordetella parapertussis 12822 1665817 NP_882908.1 CDS BPP0560 NC_002928.3 594112 595422 R Similar to and internal region of Emericella nidulans mitochondrial homoaconitase LysF SWALL:LYS4_EMENI (SWALL:Q92412) (775 aa) fasta scores: E(): 3.1e-18, 30.71% id in 459 aa, and to the full length Methanosarcina acetivorans str. C2A. 3-isopropylmalate dehydratase, large subunit LeuC SWALL:AAM06458 (EMBL:AE011011) (424 aa) fasta scores: E(): 8.2e-51, 38.62% id in 422 aa; aconitase complement(594112..595422) Bordetella parapertussis 12822 1665838 NP_882909.1 CDS BPP0561 NC_002928.3 595609 596475 D Similar to Escherichia coli cyn operon transcriptional activator CynR SWALL:CYNR_ECOLI (SWALL:P27111) (311 aa) fasta scores: E(): 3.3e-12, 27.3% id in 293 aa, and to Rhizobium meliloti transcriptional regulator protein SMB20123 SWALL:Q92X39 (EMBL:AL603642) (298 aa) fasta scores: E(): 2.9e-14, 33.09% id in 284 aa; LysR family regulatory protein 595609..596475 Bordetella parapertussis 12822 1665839 NP_882910.1 CDS BPP0562 NC_002928.3 596509 597924 R Weakly similar to the C-terminal region of Shewanella frigidimarina fumarate reductase flavoprotein subunit precursor FccA or Fcc3 SWALL:FRDA_SHEFR (SWALL:Q02469) (596 aa) fasta scores: E(): 1.2e-06, 24.68% id in 474 aa, and to the full length Salmonella typhi hypothetical protein R0146 SWALL:Q9L5J6 (EMBL:AF250878) (467 aa) fasta scores: E(): 8.4e-12, 28.42% id in 489 aa. Possible alternative translational start site; hypothetical protein complement(596509..597924) Bordetella parapertussis 12822 1667615 NP_882911.1 CDS BPP0563 NC_002928.3 597921 598163 R Poor database matches. Similar to the N-terminal region of Caulobacter crescentus hypothetical protein CC1616 SWALL:Q9A7V3 (EMBL:AE005836) (347 aa) fasta scores: E(): 9.2, 36.84% id in 57 aa; hypothetical protein complement(597921..598163) Bordetella parapertussis 12822 1667616 NP_882912.1 CDS BPP0564 NC_002928.3 598164 598988 R Similar to Frateuria sp. ANA-18. beta-ketoadipate enol-lactone hydrolase CatD SWALL:Q9Z9Y3 (EMBL:AB009343) (265 aa) fasta scores: E(): 2.7e-13, 30.07% id in 256 aa, and to Rhodococcus opacus 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase PcaL SWALL:O67982 (EMBL:AF003947) (400 aa) fasta scores: E(): 1.6e-16, 33.19% id in 241 aa; hydrolase complement(598164..598988) Bordetella parapertussis 12822 1667617 NP_882913.1 CDS BPP0565 NC_002928.3 598991 599725 R Similar to Salmonella typhimurium and Salmonella typhi high-affinity branched-chain amino acid transport ATP-binding protein LivF or LivG SWALL:LIVF_SALTY (SWALL:P30294) (237 aa) fasta scores: E(): 1.5e-32, 47.43% id in 234 aa, and to Pyrobaculum aerophilum branched-chain amino acid transport ATP-binding protein PAE1388 SWALL:Q8ZX96 (EMBL:AE009819) (234 aa) fasta scores: E(): 2.5e-36, 51.93% id in 233 aa; branched-chain amino acid ABC transporter ATP-binding protein complement(598991..599725) Bordetella parapertussis 12822 1667618 NP_882914.1 CDS BPP0566 NC_002928.3 599718 600431 R Similar to Aeropyrum pernix 242aa long hypothetical high-affinity branched-chain amino acid transport ATP-binding protein APE2524 SWALL:Q9Y8W0 (EMBL:AP000064) (242 aa) fasta scores: E(): 2e-30, 46.78% id in 233 aa, and to Pyrobaculum aerophilum branched-chain amino acid transport ATP-binding protein PAE1389 SWALL:Q8ZX95 (EMBL:AE009819) (245 aa) fasta scores: E(): 9.8e-26, 42.37% id in 236 aa; ABC transporter ATP-binding protein complement(599718..600431) Bordetella parapertussis 12822 1664799 NP_882915.1 CDS BPP0567 NC_002928.3 600433 601470 R Similar to Aeropyrum pernix hypothetical high-affinity branched-chain amino acid transport permease APE2523 SWALL:Q9Y8W1 (EMBL:AP000064) (332 aa) fasta scores: E(): 1.1e-22, 32.17% id in 317 aa, and to Streptomyces coelicolor branched amino acid transport system permease SC8A11.12 SWALL:Q9FBZ8 (EMBL:AL391041) (349 aa) fasta scores: E(): 2.6e-19, 30.48% id in 328 aa; branched-chain amino acid ABC transporter permease complement(600433..601470) Bordetella parapertussis 12822 1664800 NP_882916.1 CDS BPP0568 NC_002928.3 601487 602362 R Similar to Brucella melitensis high-affinity branched-chain amino acid transport system permease BMEII0102 SWALL:Q8YDS3 (EMBL:AE009648) (287 aa) fasta scores: E(): 1.4e-21, 29.22% id in 284 aa, and to Aeropyrum pernix hypothetical high-affinity branched-chain amino acid transport permease APE2522 SWALL:Q9Y8W2 (EMBL:AP000064) (265 aa) fasta scores: E(): 8.8e-23, 33.59% id in 259 aa; branched-chain amino acid ABC transporter permease complement(601487..602362) Bordetella parapertussis 12822 1664801 NP_882917.1 CDS BPP0569 NC_002928.3 602386 603630 R Similar to Salmonella typhimurium and Salmonella typhi leucine-specific binding protein precursor LivK or LivC SWALL:LIVK_SALTY (SWALL:P17216) (369 aa) fasta scores: E(): 2.1e-05, 22.03% id in 363 aa, and to Aeropyrum pernix long hypothetical Leu/Ile/Val-binding protein APE2521 SWALL:Q9Y8W3 (EMBL:AP000064) (430 aa) fasta scores: E(): 1.2e-33, 30% id in 410 aa; hypothetical protein complement(602386..603630) Bordetella parapertussis 12822 1665016 NP_882918.1 CDS BPP0570 NC_002928.3 603886 604698 D Internal region is similar to Bacillus halodurans transcriptional regulator BH3797 SWALL:Q9K6D2 (EMBL:AP001520) (202 aa) fasta scores: E(): 5.9e-18, 31.12% id in 196 aa, and to Mycobacterium tuberculosis regulatory protein MTV034.04 SWALL:O53661 (EMBL:AL021929) (204 aa) fasta scores: E(): 2.2e-06, 27.02% id in 185 aa. Possible alternative translational start site; TetR family regulatory protein 603886..604698 Bordetella parapertussis 12822 1665017 NP_882919.1 CDS BPP0571 NC_002928.3 604735 605172 R Weakly similar to Thermoplasma acidophilum hypothetical protein TA0352 SWALL:Q9HL78 (EMBL:AL445064) (164 aa) fasta scores: E(): 0.00039, 27.13% id in 129 aa, and to Archaeoglobus fulgidus hypothetical protein AF0203 SWALL:O30036 (EMBL:AE001092) (149 aa) fasta scores: E(): 0.00091, 31.53% id in 130 aa; hypothetical protein complement(604735..605172) Bordetella parapertussis 12822 1665018 NP_882920.1 CDS BPP0572 NC_002928.3 605169 606368 R Similar to the N-terminal region of Homo sapiens mitochondrial nonspecific lipid-transfer protein SCP2 SWALL:NLTP_HUMAN (SWALL:P22307) (547 aa) fasta scores: E(): 1.9e-27, 30.78% id in 380 aa, and to the full length Archaeoglobus fulgidus 3-ketoacyl-CoA thiolase AF0438 SWALL:O29811 (EMBL:AE001074) (387 aa) fasta scores: E(): 1.6e-37, 37.65% id in 393 aa; hypothetical protein complement(605169..606368) Bordetella parapertussis 12822 1665019 NP_882921.1 CDS BPP0573 NC_002928.3 606409 607212 R Similar to Bordetella bronchiseptica arylmalonate decarboxylase SWALL:AMDA_BORBR (SWALL:Q05115) (240 aa) fasta scores: E(): 5.7e-16, 30.41% id in 240 aa, and to Pyrococcus horikoshii hypothetical arylmalonate decarboxylase PH0985 SWALL:O58713 (EMBL:AP000004) (238 aa) fasta scores: E(): 1.1e-27, 37.17% id in 234 aa. CDS is extented at the N-terminus in comparison to other proteins. Possible alternative translational start site; hypothetical protein complement(606409..607212) Bordetella parapertussis 12822 1666668 NP_882922.1 CDS BPP0574 NC_002928.3 607206 607973 R Similar to Escherichia coli oxidoreductase UcpA SWALL:UCPA_ECOLI (SWALL:P37440) (263 aa) fasta scores: E(): 2.6e-19, 34.52% id in 252 aa, and to Rhodopseudomonas palustris 2-hydroxycyclohexanecarboxyl-CoA dehyrogenase BadH SWALL:O07457 (EMBL:U75363) (255 aa) fasta scores: E(): 1.6e-28, 39.68% id in 252 aa; short chain dehydrogenase complement(607206..607973) Bordetella parapertussis 12822 1666669 NP_882923.1 CDS BPP0575 NC_002928.3 608036 609193 R Similar to the C-terminal region of Rattus norvegicus mitochondrial, long-chain specific, acyl-CoA dehydrogenase ACADL SWALL:ACDL_RAT (SWALL:P15650) (430 aa) fasta scores: E(): 5.1e-50, 39.94% id in 373 aa, and to the full length Pseudomonas aeruginosa probable acyl-CoA dehydrogenase PA1535 SWALL:Q9I3H8 (EMBL:AE004582) (382 aa) fasta scores: E(): 1.8e-60, 46.25% id in 374 aa; acyl-CoA dehydrogenase complement(608036..609193) Bordetella parapertussis 12822 1666670 NP_882924.1 CDS BPP0576 NC_002928.3 609205 609957 R Similar to Escherichia coli oxidoreductase UcpA SWALL:UCPA_ECOLI (SWALL:P37440) (263 aa) fasta scores: E(): 3e-27, 38.73% id in 253 aa, and to Rhizobium loti probable dehydrogenase MLR7106 SWALL:Q987C7 (EMBL:AP003011) (257 aa) fasta scores: E(): 8.7e-33, 43.2% id in 250 aa; short chain dehydrogenase complement(609205..609957) Bordetella parapertussis 12822 1668189 NP_882925.1 CDS BPP0577 NC_002928.3 609975 611660 R Similar to Escherichia coli probable crotonobetaine/carnitine-CoA ligase CaiC SWALL:CAIC_ECOLI (SWALL:P31552) (522 aa) fasta scores: E(): 4.7e-34, 28.86% id in 485 aa, and to Pseudomonas diterpeniphila coenzyme A ligase TdtL SWALL:Q93QD6 (EMBL:AF274704) (543 aa) fasta scores: E(): 2.9e-58, 36.8% id in 538 aa; crotonobetaine/carnitine-CoA ligase complement(609975..611660) Bordetella parapertussis 12822 1668190 NP_882926.1 CDS BPP0578 NC_002928.3 611711 612328 R hypothetical protein complement(611711..612328) Bordetella parapertussis 12822 1668191 NP_882927.1 CDS BPP0579 NC_002928.3 612479 613285 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 612479..613285 Bordetella parapertussis 12822 1668192 NP_882928.1 CDS BPP0580 NC_002928.3 613473 614456 D Similar to Rhizobium meliloti hypothetical protein SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 3.6e-33, 37.72% id in 326 aa, and to Ralstonia solanacearum signal peptide protein RS00540 SWALL:Q8XUU5 (EMBL:AL646073) (317 aa) fasta scores: E(): 4.6e-29, 35.71% id in 308 aa; hypothetical protein 613473..614456 Bordetella parapertussis 12822 1665600 NP_882929.1 CDS BPP0581 NC_002928.3 614459 615031 D Similar to Rhizobium loti gamma-BHC dehydrochlorinase mlr5878 SWALL:Q98AS1 (EMBL:AP003007) (179 aa) fasta scores: E(): 3.2e-08, 37.66% id in 154 aa, and to Streptomyces lavendulae LinA homolog SWALL:Q9X5P7 (EMBL:AF127374) (176 aa) fasta scores: E(): 0.029, 28.88% id in 180 aa; hypothetical protein 614459..615031 Bordetella parapertussis 12822 1665601 NP_882930.1 CDS BPP0582 NC_002928.3 615049 616812 D proposed role in polysaccahride synthesis; succinate dehydrogenase 615049..616812 Bordetella parapertussis 12822 1665602 NP_882931.1 CDS BPP0583 NC_002928.3 617070 617957 D Similar to Leuconostoc mesenteroides citrate lyase beta chain CitE SWALL:CILB_LEUMC (SWALL:O53078) (302 aa) fasta scores: E(): 5.9e-22, 30.42% id in 286 aa, and to Rhizobium loti citrate lyase beta chain MLR4422 SWALL:Q98E40 (EMBL:AP003004) (297 aa) fasta scores: E(): 2.5e-22, 30.39% id in 306 aa; hypothetical protein 617070..617957 Bordetella parapertussis 12822 1665603 NP_882932.1 CDS BPP0584 NC_002928.3 617993 618448 D Similar to Rhizobium loti probable monoamine oxidase regulatory protein MLR0905 SWALL:Q98LS1 (EMBL:AP002996) (150 aa) fasta scores: E(): 5.3e-29, 53.64% id in 151 aa, and to Deinococcus radiodurans MaoC-related protein DR1239 SWALL:Q9RUZ1 (EMBL:AE001972) (160 aa) fasta scores: E(): 2.7e-28, 51.35% id in 148 aa; hypothetical protein 617993..618448 Bordetella parapertussis 12822 1665604 NP_882933.1 CDS BPP0585 NC_002928.3 618474 619640 D Similar to Caulobacter crescentus acyl-CoA dehydrogenase CC2328 SWALL:Q9A5W9 (EMBL:AE005903) (387 aa) fasta scores: E(): 2.2e-84, 55.81% id in 387 aa, and to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase PA0879 SWALL:Q9I566 (EMBL:AE004522) (386 aa) fasta scores: E(): 1.2e-61, 44.41% id in 394 aa; acyl-CoA dehydrogenase 618474..619640 Bordetella parapertussis 12822 1665605 NP_882934.1 CDS BPP0586 NC_002928.3 619733 620971 D Similar to Rhizobium meliloti conserved membrane-anchored protein SMB21182 SWALL:Q92V66 (EMBL:AL603645) (394 aa) fasta scores: E(): 1.2e-45, 36.69% id in 387 aa, and to Pseudomonas aeruginosa hypothetical protein PA0446 SWALL:Q9I672 (EMBL:AE004482) (407 aa) fasta scores: E(): 1.2e-45, 36.07% id in 413 aa; CaiB/BaiF family protein 619733..620971 Bordetella parapertussis 12822 1668344 NP_882935.1 CDS BPP0587 NC_002928.3 620973 622148 D Similar to Homo sapiens alpha-methylacyl-CoA racemase AMACR SWALL:AMAC_HUMAN (SWALL:Q9UHK6) (382 aa) fasta scores: E(): 1.9e-47, 41.81% id in 342 aa, and to Caulobacter crescentus hypothetical protein CC1841 SWALL:Q9A785 (EMBL:AE005858) (375 aa) fasta scores: E(): 5.9e-75, 56.31% id in 364 aa; CaiB/BaiF family protein 620973..622148 Bordetella parapertussis 12822 1668345 NP_882936.1 CDS BPP0588 NC_002928.3 622159 623133 D Similar to Rhizobium meliloti hypothetical protein SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.1e-34, 39.43% id in 317 aa, and to Comamonas testosteroni hypothetical protein OrfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 3.2e-33, 40.84% id in 284 aa; hypothetical protein 622159..623133 Bordetella parapertussis 12822 1667667 NP_882937.1 CDS BPP0589 NC_002928.3 623144 623566 D Weakly similar to Streptomyces maritimus hypothetical protein EncO SWALL:Q9KHK0 (EMBL:AF254925) (130 aa) fasta scores: E(): 0.053, 26.51% id in 132 aa, and to Ralstonia solanacearum hypothetical protein RS03879 SWALL:Q8XS81 (EMBL:AL646079) (143 aa) fasta scores: E(): 5.7, 25.34% id in 146 aa; hypothetical protein 623144..623566 Bordetella parapertussis 12822 1668346 NP_882938.1 CDS BPP0590 NC_002928.3 623586 624269 D Similar to Pseudomonas putida 4-nitrobenzoate reductase PnbA SWALL:Q9FD36 (EMBL:AF292094) (227 aa) fasta scores: E(): 2.1e-18, 34.65% id in 202 aa, and to Ralstonia solanacearum probable oxidoreductase RS03970 SWALL:Q8XYZ8 (EMBL:AL646065) (235 aa) fasta scores: E(): 1.6e-21, 39.17% id in 217 aa; nitroreductase 623586..624269 Bordetella parapertussis 12822 1668347 NP_882939.1 CDS BPP0591 NC_002928.3 624304 625077 D Similar to Rhizobium loti enoyl CoA hydratase MLL5584 SWALL:Q98BG7 (EMBL:AP003007) (257 aa) fasta scores: E(): 4.4e-22, 38.58% id in 241 aa, and to Bacillus halodurans enoyl-CoA hydratase BH1135 SWALL:Q9KDS6 (EMBL:AP001511) (260 aa) fasta scores: E(): 6.9e-22, 35.51% id in 245 aa; enoyl-CoA hydratase/isomerase 624304..625077 Bordetella parapertussis 12822 1668348 NP_882940.1 CDS BPP0592 NC_002928.3 625233 626402 D Weakly similar to Pseudomonas aeruginosa leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor BraC SWALL:BRAC_PSEAE (SWALL:P21175) (373 aa) fasta scores: E(): 2.8e-13, 25.69% id in 362 aa, and to Ralstonia solanacearum probable leucine-specific binding precursor transmembrane protein RS02149 SWALL:Q8XPP6 (EMBL:AL646085) (380 aa) fasta scores: E(): 1.7e-11, 25.06% id in 379 aa; extracellular ligand binding protein 625233..626402 Bordetella parapertussis 12822 1664645 NP_882941.1 CDS BPP0593 NC_002928.3 626419 627294 D Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport system permease BraD SWALL:BRAD_PSEAE (SWALL:P21627) (307 aa) fasta scores: E(): 2.2e-18, 26.62% id in 293 aa, and to Archaeoglobus fulgidus branched-chain amino acid ABC transporter, permease AF0825 SWALL:O29433 (EMBL:AE001047) (297 aa) fasta scores: E(): 7.6e-26, 35.66% id in 286 aa; branched-chain amino acid ABC transporter permease 626419..627294 Bordetella parapertussis 12822 1664646 NP_882942.1 CDS BPP0594 NC_002928.3 627287 628183 D Similar to Ralstonia solanacearum probable amino-acid transmembrane ABC transporter protein RS01987 SWALL:Q8XTT9 (EMBL:AL646076) (299 aa) fasta scores: E(): 4.8e-21, 33.33% id in 264 aa, and to Brucella melitensis high-affinity branched-chain amino acid transport system permease BMEII0101 SWALL:Q8YDS4 (EMBL:AE009648) (315 aa) fasta scores: E(): 7.8e-17, 26.35% id in 296 aa; branched-chain amino acid ABC transporter permease 627287..628183 Bordetella parapertussis 12822 1664647 NP_882943.1 CDS BPP0596 NC_002928.3 628932 629651 D Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraG SWALL:BRAG_PSEAE (SWALL:P21630) (233 aa) fasta scores: E(): 1e-29, 44.82% id in 232 aa, and to Thermotoga maritima branched chain amino acid ABC transporter, ATP-binding protein TM1139 SWALL:Q9X0M3 (EMBL:AE001771) (239 aa) fasta scores: E(): 6.5e-32, 48.1% id in 237 aa; ABC transporter ATP-binding protein 628932..629651 Bordetella parapertussis 12822 1667950 NP_882944.1 CDS BPP0597 NC_002928.3 629666 631636 R Similar to Thermoanaerobacter brockii NADH oxidase SWALL:NADO_THEBR (SWALL:P32382) (651 aa) fasta scores: E(): 8e-46, 33.78% id in 672 aa, and to Pseudomonas aeruginosa probable oxidoreductase PA4986 SWALL:Q9HUH9 (EMBL:AE004911) (648 aa) fasta scores: E(): 2.3e-45, 33.23% id in 668 aa; NADH:flavin oxidoreductase / NADH oxidase complement(629666..631636) Bordetella parapertussis 12822 1667951 NP_882945.1 CDS BPP0599 NC_002928.3 632703 633668 D Similar to Comamonas testosteroni hypothetical protein OrfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 3.3e-31, 37.74% id in 302 aa, and to Ralstonia solanacearum signal peptide protein RS00540 SWALL:Q8XUU5 (EMBL:AL646073) (317 aa) fasta scores: E(): 3.4e-30, 36.16% id in 318 aa; hypothetical protein 632703..633668 Bordetella parapertussis 12822 1668340 NP_882946.1 CDS BPP0600 NC_002928.3 633680 634963 D C-terminus is similar to the C-terminal region of Neurospora crassa acetyl-CoA hydrolase Acu-8 SWALL:ACU8_NEUCR (SWALL:P15937) (525 aa) fasta scores: E(): 1.5e-08, 25.7% id in 389 aa. Full length CDS is similar to Clostridium kluyveri 4-hydroxybutyrate coenzyme A transferase Cat2 SWALL:CAT2_CLOKL (SWALL:P38942) (429 aa) fasta scores: E(): 5.6e-41, 35.27% id in 394 aa; acetyl-CoA hydrolase/transferase 633680..634963 Bordetella parapertussis 12822 1668341 NP_882947.1 CDS BPP0601 NC_002928.3 634989 636497 D Similar to Arabidopsis thaliana 4-coumarate--CoA ligase 2 4CL2 SWALL:4CL2_ARATH (SWALL:Q9S725) (556 aa) fasta scores: E(): 5.8e-31, 30.96% id in 507 aa, and to Rhizobium meliloti probable long chain fatty acid CoA ligase SMA0150 SWALL:Q930W4 (EMBL:AE007202) (508 aa) fasta scores: E(): 3.4e-42, 32.31% id in 489 aa; AMP-binding protein 634989..636497 Bordetella parapertussis 12822 1668342 NP_882948.1 CDS BPP0602 NC_002928.3 636509 637318 R Similar to Pseudomonas putida pca regulon regulatory protein PcaR SWALL:PCAR_PSEPU (SWALL:Q52154) (291 aa) fasta scores: E(): 3e-12, 26.55% id in 241 aa, and to Ralstonia solanacearum transcription regulator protein RS05096 SWALL:Q8Y1D3 (EMBL:AL646060) (273 aa) fasta scores: E(): 2.7e-21, 35.07% id in 268 aa; IclR family regulatory protein complement(636509..637318) Bordetella parapertussis 12822 1668343 NP_882949.1 CDS BPP0603 NC_002928.3 637315 638124 R Similar to Pseudomonas putida pca regulon regulatory protein PcaR SWALL:PCAR_PSEPU (SWALL:Q52154) (291 aa) fasta scores: E(): 8.9e-07, 29.7% id in 239 aa, and to Ralstonia solanacearum transcription regulator protein RS05096 SWALL:Q8Y1D3 (EMBL:AL646060) (273 aa) fasta scores: E(): 5.5e-20, 35.33% id in 266 aa; IclR family regulatory protein complement(637315..638124) Bordetella parapertussis 12822 1667929 NP_882950.1 CDS BPP0604 NC_002928.3 638340 641843 R biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase complement(638340..641843) Bordetella parapertussis 12822 1667930 NP_882951.1 CDS BPP0606 NC_002928.3 643272 644147 D Similar to Pseudomonas aeruginosa (R)-specific enoyl-CoA hydratase PhaJ2 SWALL:Q9LBK1 (EMBL:AB040026) (288 aa) fasta scores: E(): 1.2e-48, 50.69% id in 288 aa, and to Pseudomonas mendocina hypothetical 21.4 kDa protein SWALL:Q9ZER1 (EMBL:AJ012480) (198 aa) fasta scores: E(): 1.1e-29, 45.81% id in 203 aa; enoyl-CoA hydratase 643272..644147 Bordetella parapertussis 12822 1668098 NP_882952.1 CDS BPP0607 NC_002928.3 644173 644922 D Similar to Bacillus subtilis 3-oxoacyl-[acyl-carrier protein] reductase FabG SWALL:FABG_BACSU (SWALL:P51831) (246 aa) fasta scores: E(): 3.9e-32, 42.62% id in 244 aa, and to Streptomyces coelicolor short chain oxidoreductase 2SCG61.28c SWALL:Q9K3Y7 (EMBL:AL359949) (253 aa) fasta scores: E(): 2.7e-38, 48.36% id in 244 aa; short chain dehydrogenase 644173..644922 Bordetella parapertussis 12822 1668099 NP_882953.1 CDS BPP0608 NC_002928.3 645026 646231 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 645026..646231 Bordetella parapertussis 12822 1668100 NP_882954.1 CDS BPP0609 NC_002928.3 646241 648190 D Similar to Escherichia coli acetyl-coenzyme A synthetase Acs SWALL:ACSA_ECOLI (SWALL:P27550) (652 aa) fasta scores: E(): 2.1e-57, 31.78% id in 626 aa, and to Bacillus halodurans acetyl-CoA synthetase BH1137 SWALL:Q9KDS4 (EMBL:AP001511) (648 aa) fasta scores: E(): 2.7e-94, 39.78% id in 641 aa; AMP-binding protein 646241..648190 Bordetella parapertussis 12822 1665513 NP_882955.1 CDS BPP0610 NC_002928.3 648174 649055 D Similar to Pseudomonas putida pca regulon regulatory protein PcaR SWALL:PCAR_PSEPU (SWALL:Q52154) (291 aa) fasta scores: E(): 1.3e-09, 26.48% id in 287 aa, and to Brucella melitensis transcriptional regulator BMEII022 SWALL:Q8YB78 (EMBL:AE009735) (284 aa) fasta scores: E(): 7.5e-26, 34.35% id in 262 aa; IclR family regulatory protein 648174..649055 Bordetella parapertussis 12822 1665273 NP_882956.1 CDS BPP0611 NC_002928.3 649106 650287 D Similar to Ralstonia solanacearum hypothetical protein RS05729 SWALL:Q8Y047 (EMBL:AL646063) (405 aa) fasta scores: E(): 6.9e-37, 33% id in 400 aa, and to Thermoplasma volcanium L-carnitine dehydratase TVG1215416 SWALL:Q979H5 (EMBL:AP000995) (399 aa) fasta scores: E(): 1.5e-35, 30.02% id in 393 aa; CaiB/BaiF family protein 649106..650287 Bordetella parapertussis 12822 1665274 NP_882957.1 CDS BPP0612 NC_002928.3 650311 651240 R Similar to Escherichia coli cyn operon transcriptional activator CynR SWALL:CYNR_ECOLI (SWALL:P27111) (311 aa) fasta scores: E(): 5.9e-17, 29.43% id in 299 aa, and to Rhizobium loti nitrogen assimilation control protein MLR6097 SWALL:Q98A96 (EMBL:AP003008) (316 aa) fasta scores: E(): 2.5e-22, 30.09% id in 309 aa; LysR family regulatory protein complement(650311..651240) Bordetella parapertussis 12822 1665275 NP_882958.1 CDS BPP0613 NC_002928.3 651353 652519 D Similar to Salmonella typhimurium acyl-CoA dehydrogenase STM0857 SWALL:Q8ZQL7 (EMBL:AE008736) (387 aa) fasta scores: E(): 7.3e-117, 70.6% id in 381 aa, and to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase PA0879 SWALL:Q9I566 (EMBL:AE004522) (386 aa) fasta scores: E(): 3.8e-116, 71.91% id in 381 aa; acyl-CoA dehydrogenase 651353..652519 Bordetella parapertussis 12822 1665276 NP_882959.1 CDS etfA NC_002928.3 653260 654198 D Similar to Bradyrhizobium japonicum electron transfer flavoprotein alpha-subunit EftA or EtfL SWALL:ETFA_BRAJA (SWALL:P53573) (314 aa) fasta scores: E(): 2.5e-62, 67.94% id in 312 aa, and to Ralstonia solanacearum probable electron transfer flavoprotein EftA or Rsc0924 or Rs04490 SWALL:Q8Y0W9 (EMBL:AL646061) (311 aa) fasta scores: E(): 4.7e-72, 75.64% id in 312 aa; electron transfer flavoprotein subunit alpha 653260..654198 Bordetella parapertussis 12822 1666780 NP_882960.1 CDS BPP0616 NC_002928.3 654262 655110 D Similar to Pseudomonas aeruginosa hypothetical protein Pa0878 SWALL:Q9I567 (EMBL:AE004522) (275 aa) fasta scores: E(): 9.1e-41, 45.16% id in 279 aa, and to Brucella melitensis hypothetical cytosolic protein Bmeii1075 SWALL:Q8YB26 (EMBL:AE009739) (276 aa) fasta scores: E(): 1.4e-40, 47.79% id in 272 aa; hypothetical protein 654262..655110 Bordetella parapertussis 12822 1666781 NP_882961.1 CDS BPP0617 NC_002928.3 655222 656178 R Similar to Burkholderia cepacia DntR SWALL:Q8VUD7 (EMBL:AF169302) (301 aa) fasta scores: E(): 6.9e-24, 32.42% id in 293 aa, and to Pseudomonas stutzeri regulatory protein NahR SWALL:Q9ZI62 (EMBL:AF039534) (300 aa) fasta scores: E(): 7.9e-24, 32.42% id in 293 aa; LysR family transcriptional regulator complement(655222..656178) Bordetella parapertussis 12822 1666782 NP_882962.1 CDS BPP0618 NC_002928.3 656289 657713 D Similar to Mycobacterium smegmatis hypothetical 50.9 kDa protein SWALL:Q938D1 (EMBL:AY054120) (477 aa) fasta scores: E(): 1.3e-12, 24.31% id in 473 aa, and to Aspergillus terreus hypothetical 52.8 kDa protein SWALL:Q9Y7D9 (EMBL:AF141925) (490 aa) fasta scores: E(): 4.9e-12, 25.4% id in 492 aa; hypothetical protein 656289..657713 Bordetella parapertussis 12822 1665659 NP_882963.1 CDS BPP0619 NC_002928.3 657939 658910 D Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 6.7e-33, 34.16% id in 322 aa, and to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 3.6e-29, 34.75% id in 305 aa; hypothetical protein 657939..658910 Bordetella parapertussis 12822 1665660 NP_882964.1 CDS BPP0620 NC_002928.3 658973 659962 D Similar to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.2e-29, 31.86% id in 317 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 2.7e-28, 33.63% id in 330 aa; hypothetical protein 658973..659962 Bordetella parapertussis 12822 1665661 NP_882965.1 CDS BPP0621 NC_002928.3 660113 660724 D Similar to Mycobacterium tuberculosis hypothetical 22.9 kDa protein RV3557c or Mtcy06g11.04c or Mt3661 SWALL:P96839 (EMBL:Z92774) (200 aa) fasta scores: E(): 2.3e-09, 29.38% id in 194 aa, and to Streptomyces coelicolor TetR transcriptional regulator Sci30a.12C SWALL:Q9S261 (EMBL:AL096811) (251 aa) fasta scores: E(): 4.7e-08, 25.12% id in 199 aa; hypothetical protein 660113..660724 Bordetella parapertussis 12822 1665662 NP_882966.1 CDS BPP0622 NC_002928.3 660777 662198 R ortholog of Bordetella pertussis (BX470248) BP0030; hypothetical protein complement(660777..662198) Bordetella parapertussis 12822 1665663 NP_882967.1 CDS BPP0623 NC_002928.3 662240 663097 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(662240..663097) Bordetella parapertussis 12822 1665664 NP_882968.1 CDS BPP0624 NC_002928.3 663260 664021 D ortholog of Bordetella pertussis (BX470248) BP3845; nitroreductase 663260..664021 Bordetella parapertussis 12822 1665665 NP_882969.1 CDS BPP0625 NC_002928.3 664101 664787 R ortholog of Bordetella pertussis (BX470248) BP3846; TetR family transcriptional regulator complement(664101..664787) Bordetella parapertussis 12822 1665580 NP_882970.1 CDS BPP0626 NC_002928.3 665084 665968 D ortholog of Bordetella pertussis (BX470248) BP3847; hydroxymethylglutaryl-CoA lyase 665084..665968 Bordetella parapertussis 12822 1665581 NP_882971.1 CDS BPP0627 NC_002928.3 665965 666744 D ortholog of Bordetella pertussis (BX470248) BP3848; enoyl-CoA hydratase/isomerase 665965..666744 Bordetella parapertussis 12822 1665582 NP_882972.1 CDS BPP0628 NC_002928.3 666802 668064 D ortholog of Bordetella pertussis (BX470248) BP3849; CAIB/BAIF family protein 666802..668064 Bordetella parapertussis 12822 1665583 NP_882973.1 CDS BPP0629 NC_002928.3 668163 669134 D ortholog of Bordetella pertussis (BX470248) BP3850; lipoprotein 668163..669134 Bordetella parapertussis 12822 1665584 NP_882974.1 CDS BPP0630 NC_002928.3 669143 670315 D Weakly similar to Escherichia coli lactaldehyde reductase FucO SWALL:FUCO_ECOLI (SWALL:P11549) (383 aa) fasta scores: E(): 1.6e-17, 27.9% id in 387 aa, and to Salmonella typhi 1,2-propanediol oxidoreductase STY3112 SWALL:Q8Z432 (EMBL:AL627277) (382 aa) fasta scores: E(): 2.9e-20, 29.84% id in 392 aa; iron-containing alcohol dehydrogenase 669143..670315 Bordetella parapertussis 12822 1665445 NP_882975.1 CDS BPP0631 NC_002928.3 670338 671096 D Similar to Escherichia coli probable enoyl-CoA hydratase PaaG SWALL:PAAG_ECOLI (SWALL:P77467) (262 aa) fasta scores: E(): 2.6e-31, 39.45% id in 256 aa, and to Ralstonia solanacearum probable enoyl-CoA hydratase RS00229 SWALL:Q8XVF8 (EMBL:AL646072) (262 aa) fasta scores: E(): 5e-30, 39.34% id in 244 aa; enoyl-CoA hydratase/isomerase 670338..671096 Bordetella parapertussis 12822 1665446 NP_882976.1 CDS BPP0632 NC_002928.3 671137 672618 R Similar to Pseudomonas sp. 6-aminohexanoate-cyclic-dimer hydrolase NylA SWALL:NYLA_PSES8 (SWALL:P13398) (492 aa) fasta scores: E(): 6.3e-40, 33.26% id in 481 aa, and to Flavobacterium sp. 6-aminohexanoate-cyclic-dimer hydrolase NylA SWALL:NYLA_FLASK (SWALL:P13397) (492 aa) fasta scores: E(): 4.8e-39, 33.05% id in 481 aa; amidase complement(671137..672618) Bordetella parapertussis 12822 1665447 NP_882977.1 CDS BPP0633 NC_002928.3 672622 673455 R Similar to Rhizobium loti N-formylglutamate amidohydrolase MLR8322 SWALL:Q983H9 (EMBL:AP003013) (273 aa) fasta scores: E(): 6.4e-61, 56.82% id in 271 aa, and to Caulobacter crescentus formiminoglutamase CC0958 SWALL:Q9A9M0 (EMBL:AE005772) (271 aa) fasta scores: E(): 9.7e-59, 56.39% id in 266 aa; hypothetical protein complement(672622..673455) Bordetella parapertussis 12822 1665448 NP_882978.1 CDS BPP0634 NC_002928.3 673473 673955 R hypothetical protein complement(673473..673955) Bordetella parapertussis 12822 1665449 NP_882979.1 CDS BPP0635 NC_002928.3 673955 675412 R Similar to Bacillus stearothermophilus thermostable aldehyde dehydrogenase AldHT SWALL:DHAL_BACST (SWALL:P42329) (488 aa) fasta scores: E(): 8.9e-46, 33.19% id in 476 aa, and to Anabaena sp. aldehyde dehydrogenase ALR3771 SWALL:Q8YQP9 (EMBL:AP003594) (498 aa) fasta scores: E(): 8.6e-49, 36.68% id in 477 aa; aldehyde dehydrogenase complement(673955..675412) Bordetella parapertussis 12822 1665450 NP_882980.1 CDS BPP0636 NC_002928.3 675420 676028 R Similar to Escherichia coli NAD(P)H-dependent FMN reductase SsuE SWALL:SSUE_ECOLI (SWALL:P80644) (191 aa) fasta scores: E(): 4.4e-18, 37.36% id in 182 aa, and to EDTA-degrading bacterium BNC1 NADH-dependent FMN reductase EmoB SWALL:Q9F9T2 (EMBL:AF176664) (197 aa) fasta scores: E(): 2.5e-33, 52.85% id in 193 aa; NADPH-dependent FMN reductase complement(675420..676028) Bordetella parapertussis 12822 1667846 NP_882981.1 CDS BPP0637 NC_002928.3 676036 676821 R Similar to Escherichia coli aliphatic sulfonates transport permease SsuC SWALL:SSUC_ECOLI (SWALL:P75851) (263 aa) fasta scores: E(): 3.5e-21, 30.99% id in 242 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein AGR_L_128GM SWALL:AAL45391 (EMBL:AE009387) (267 aa) fasta scores: E(): 1.3e-29, 39.83% id in 241 aa; transport system permease complement(676036..676821) Bordetella parapertussis 12822 1665451 NP_882982.1 CDS BPP0638 NC_002928.3 676837 677652 R Similar to Methanococcus jannaschii hypothetical ABC transporter ATP-binding protein MJ0412 mj0412 SWALL:Y412_METJA (SWALL:Q57855) (267 aa) fasta scores: E(): 1.2e-37, 49.77% id in 225 aa, and to Rhizobium loti ATP-binding protein of ABC transporter MLL1253 SWALL:Q98KZ4 (EMBL:AP002997) (267 aa) fasta scores: E(): 4.6e-37, 45.94% id in 259 aa; ABC transporter ATP-binding protein complement(676837..677652) Bordetella parapertussis 12822 1667749 NP_882983.1 CDS BPP0639 NC_002928.3 677680 678756 R Similar to Agrobacterium tumefaciens hypothetical protein AGR_L_129GM SWALL:AAL45390 (EMBL:AE009387) (329 aa) fasta scores: E(): 2.1e-06, 23.32% id in 343 aa, and to Ralstonia solanacearum hypothetical signal peptide protein RS05672 SWALL:Q8XU03 (EMBL:AL646075) (328 aa) fasta scores: E(): 1.4e-06, 22.05% id in 340 aa; hypothetical protein complement(677680..678756) Bordetella parapertussis 12822 1667750 NP_882984.1 CDS BPP0640 NC_002928.3 678788 679894 R Similar to Photorhabdus luminescens alkanal monooxygenase alpha chain LuxA SWALL:LXA1_PHOLU (SWALL:P19839) (360 aa) fasta scores: E(): 1.4e-08, 22% id in 359 aa, and to Rhizobium sp. hypothetical protein Y4VJ SWALL:Y4VJ_RHISN (SWALL:Q53218) (351 aa) fasta scores: E(): 1.8e-10, 24.56% id in 346 aa; luciferase-like monooxygenase complement(678788..679894) Bordetella parapertussis 12822 1667751 NP_882985.1 CDS BPP0641 NC_002928.3 680140 680967 D Similar to Escherichia coli negative regulator of allantoin and glyoxylate utilization operons AllR or GlxA3 SWALL:ALLR_ECOLI (SWALL:P77734) (271 aa) fasta scores: E(): 3.6e-14, 25.94% id in 266 aa, and to Rhizobium meliloti acetate operon repressor IclR protein RB1389 or SMB20682 SWALL:Q92TV6 (EMBL:AL603646) (273 aa) fasta scores: E(): 8.2e-17, 26.05% id in 261 aa; IclR family transcriptional regulator 680140..680967 Bordetella parapertussis 12822 1667752 NP_882986.1 CDS BPP0642 NC_002928.3 680995 681699 D Similar to Clostridium acetobutylicum Crp Cap0082 SWALL:Q97TL8 (EMBL:AE001438) (188 aa) fasta scores: E(): 9.8e-11, 27.32% id in 183 aa, and to Corynebacterium glutamicum probable transcription regulator SWALL:Q93PX6 (EMBL:AF293334) (227 aa) fasta scores: E(): 1.8e-10, 31.84% id in 201 aa; regulator 680995..681699 Bordetella parapertussis 12822 1667753 NP_882987.1 CDS BPP0643 NC_002928.3 681796 682545 D Similar to Streptomyces antibioticus Sim-nj1 or SimD2 or SimJ1 SWALL:Q9F5J1 (EMBL:AF321122) (273 aa) fasta scores: E(): 2.5e-25, 45.02% id in 251 aa, and to Rhizobium loti probable dehydrogenase mlr7106 SWALL:Q987C7 (EMBL:AP003011) (257 aa) fasta scores: E(): 2.7e-25, 41.39% id in 244 aa; short chain dehydrogenase 681796..682545 Bordetella parapertussis 12822 1665369 NP_882988.1 CDS BPP0644 NC_002928.3 682613 683590 D Similar to Agrobacterium tumefaciens hypothetical protein Atu4727 or Agr_l_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 1e-37, 39.62% id in 318 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 2e-31, 35.2% id in 321 aa; hypothetical protein 682613..683590 Bordetella parapertussis 12822 1665370 NP_882989.1 CDS BPP0645 NC_002928.3 683617 684993 R Weakly similar to Caulobacter crescentus hypothetical protein Cc2770 cc2770 SWALL:Q9A4R0 (EMBL:AE005942) (435 aa) fasta scores: E(): 0.0018, 27.2% id in 430 aa, and to Erwinia amylovora hypothetical 47.8 kDa protein SWALL:Q9F814 (EMBL:AF264948) (427 aa) fasta scores: E(): 4e-05, 22.45% id in 423 aa; hypothetical protein complement(683617..684993) Bordetella parapertussis 12822 1665371 NP_882990.1 CDS BPP0646 NC_002928.3 685005 685358 R Similar to Mycobacterium tuberculosis hypothetical 11.3 kDa protein Rv2021c or Mtv018.08c or Mt2077 SWALL:O53467 (EMBL:AL021899) (101 aa) fasta scores: E(): 2.6, 30.2% id in 96 aa, and to Ralstonia solanacearum transcription regulator protein Rsc1447 or Rs03860 SWALL:Q8XZF4 (EMBL:AL646064) (84 aa) fasta scores: E(): 0.27, 37.7% id in 61 aa; hypothetical protein complement(685005..685358) Bordetella parapertussis 12822 1665372 NP_882991.1 CDS BPP0647 NC_002928.3 685490 686275 R Similar to Rhizobium meliloti transcription regulator protein R01691 or Smc00263 SWALL:Q92PP5 (EMBL:AL591788) (282 aa) fasta scores: E(): 1.4e-27, 41.29% id in 247 aa, and to Agrobacterium tumefaciens transcriptional regulator, IclR family Atu4824 or Agr_l_119 SWALL:AAL45618 (EMBL:AE009411) (288 aa) fasta scores: E(): 6.8e-25, 38.27% id in 243 aa; transcriptional regulator complement(685490..686275) Bordetella parapertussis 12822 1665373 NP_882992.1 CDS BPP0649 NC_002928.3 687644 689152 D Similar to Amycolatopsis sp. HR167 feruloyl-CoA synthetase Fcs SWALL:Q9EY88 (EMBL:AJ290449) (491 aa) fasta scores: E(): 1.8e-38, 34.77% id in 486 aa, and to Streptomyces maritimus acyl-CoA ligase EncH SWALL:Q9KHL1 (EMBL:AF254925) (535 aa) fasta scores: E(): 1.1e-38, 33.97% id in 471 aa; acetyl-CoA synthetase 687644..689152 Bordetella parapertussis 12822 1665202 NP_882993.1 CDS BPP0650 NC_002928.3 689184 690203 D Similar to Streptomyces coelicolor hypothetical protein Sco6307 or Scif3.09C SWALL:Q93RT4 (EMBL:AL590982) (320 aa) fasta scores: E(): 7e-12, 34.94% id in 332 aa, and to Aspergillus fumigatus hypothetical 35.1 kDa protein Afa14e5.08 SWALL:CAD27299 (EMBL:AL683874) (313 aa) fasta scores: E(): 1.3, 27.66% id in 329 aa; hypothetical protein 689184..690203 Bordetella parapertussis 12822 1665203 NP_882994.1 CDS BPP0651 NC_002928.3 690213 690698 D Similar to Sulfolobus tokodaii hypothetical protein St0068 SWALL:Q976X1 (EMBL:AP000981) (165 aa) fasta scores: E(): 6.1e-12, 34.16% id in 161 aa, and to Archaeoglobus fulgidus monoamine oxidase regulatory protein, Af0198 SWALL:O30041 (EMBL:AE001092) (146 aa) fasta scores: E(): 1.4e-11, 36.76% id in 136 aa; hypothetical protein 690213..690698 Bordetella parapertussis 12822 1665204 NP_882995.1 CDS BPP0652 NC_002928.3 690761 691744 D Similar to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 5.5e-44, 40.86% id in 323 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.8e-41, 40.49% id in 321 aa; hypothetical protein 690761..691744 Bordetella parapertussis 12822 1665205 NP_882996.1 CDS BPP0653 NC_002928.3 691790 692623 R Similar to Caulobacter crescentus enoyl-CoA hydratase/isomerase Cc2575 SWALL:Q9A582 (EMBL:AE005925) (265 aa) fasta scores: E(): 8.7e-38, 46.72% id in 244 aa, and to Rhizobium meliloti enoyl-CoA hydratase PaaG or Rb1553 or Smb21633 SWALL:Q92TG7 (EMBL:AL603647) (263 aa) fasta scores: E(): 1.3e-23, 36.11% id in 252 aa; enoyl-CoA hydratase/isomerase complement(691790..692623) Bordetella parapertussis 12822 1665206 NP_882997.1 CDS gcdH NC_002928.3 694020 695246 R Similar to Mus musculus glutaryl-CoA dehydrogenase, mitochondrial precursor GcdH SWALL:GCDH_MOUSE (SWALL:Q60759) (438 aa) fasta scores: E(): 4.1e-101, 65.89% id in 387 aa, and to Pseudomonas aeruginosa glutaryl-CoA dehydrogenase GcdH or Pa0447 SWALL:Q9I671 (EMBL:AE004482) (393 aa) fasta scores: E(): 6.5e-104, 66.15% id in 387 aa; glutaryl-CoA dehydrogenase complement(694020..695246) Bordetella parapertussis 12822 1664889 NP_882998.1 CDS BPP0657 NC_002928.3 695293 696093 R Similar to Clostridium acetobutylicum 3-hydroxybutyryl-CoA dehydratase Crt or Cac2712 SWALL:CRT_CLOAB (SWALL:P52046) (261 aa) fasta scores: E(): 2.8e-28, 38.82% id in 255 aa, and to Sulfolobus solfataricus 3-hydroxyacyl-CoA dehydrogenase/enoyl CoA hydratase sso2514 SWALL:Q97VU5 (EMBL:AE006848) (663 aa) fasta scores: E(): 6.5e-32, 37.98% id in 258 aa; enoyl CoA hydratase complement(695293..696093) Bordetella parapertussis 12822 1664890 NP_882999.1 CDS BPP0658 NC_002928.3 696112 697296 R Similar to Cucurbita cv. Kurokawa Amakuri 3-ketoacyl-CoA thiolase precursor SWALL:P93112 (EMBL:D70895) (461 aa) fasta scores: E(): 4.6e-51, 41.43% id in 391 aa, and to Caulobacter crescentus thiolase Cc3462 SWALL:Q9A2U4 (EMBL:AE006005) (395 aa) fasta scores: E(): 7.3e-85, 56.56% id in 396 aa; thiolase complement(696112..697296) Bordetella parapertussis 12822 1664891 NP_883000.1 CDS BPP0659 NC_002928.3 697563 698537 D Similar to Agrobacterium tumefaciens hypothetical protein Atu4727 or Agr_l_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 1.5e-37, 39.53% id in 301 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 8.6e-37, 36.74% id in 313 aa; hypothetical protein 697563..698537 Bordetella parapertussis 12822 1664892 NP_883001.1 CDS BPP0660 NC_002928.3 698539 699981 D Similar to Pyrococcus furiosus acetyl-CoA synthetase AcdA SWALL:Q9Y8L1 (EMBL:AJ240061) (462 aa) fasta scores: E(): 4.6e-41, 33.26% id in 457 aa, and to Pyrococcus abyssi succinyl-CoA synthetase alpha chain related protein pab2112 SWALL:Q9V1S3 (EMBL:AJ248284) (472 aa) fasta scores: E(): 2.2e-40, 31.71% id in 473 aa; acetyl-CoA synthetase 698539..699981 Bordetella parapertussis 12822 1667249 NP_883002.1 CDS BPP0661 NC_002928.3 699997 700710 D Similar to Archaeoglobus fulgidus hypothetical protein Af1211 SWALL:O29057 (EMBL:AE001020) (685 aa) fasta scores: E(): 9.6e-16, 37.63% id in 186 aa, and to Pyrococcus furiosus hypothetical protein Pf1837 SWALL:AAL81961 (EMBL:AE010279) (236 aa) fasta scores: E(): 4e-15, 33.04% id in 233 aa; hypothetical protein 699997..700710 Bordetella parapertussis 12822 1667250 NP_883003.1 CDS BPP0662 NC_002928.3 700685 701641 R Similar to Escherichia coli and Escherichia coli O157:H7 glycine cleavage system transcriptional activator GcvA or B2808 or Z4125 or Ecs3668 SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 4e-27, 32.33% id in 300 aa, and to Rhizobium loti glycine cleavage system transcription activator Mlr1973 SWALL:Q98JE9 (EMBL:AP002998) (303 aa) fasta scores: E(): 2.2e-28, 36.33% id in 300 aa; LysR family transcriptional regulator complement(700685..701641) Bordetella parapertussis 12822 1667251 NP_883004.1 CDS BPP0663 NC_002928.3 701861 702718 R Similar to Ralstonia solanacearum hydrolase Rsp0790 or Rs01917 SWALL:Q8XRP1 (EMBL:AL646080) (305 aa) fasta scores: E(): 2.3e-16, 33.61% id in 238 aa, and to Streptomyces coelicolor hydrolase Sco4395 or Scd10.27 SWALL:Q9K3V0 (EMBL:AL359988) (352 aa) fasta scores: E(): 4.5e-15, 31% id in 258 aa; hydrolase complement(701861..702718) Bordetella parapertussis 12822 1667252 NP_883005.1 CDS BPP0664 NC_002928.3 702744 703346 R Similar to Rhizobium loti hypothetical protein Mlr6789 SWALL:Q988D2 (EMBL:AP003010) (196 aa) fasta scores: E(): 3e-22, 38.71% id in 186 aa, and to Agrobacterium tumefaciens hypothetical protein Atu4237 or Agr_l_1248 SWALL:AAK89202 (EMBL:AE009353) (200 aa) fasta scores: E(): 2.1e-14, 39.08% id in 197 aa; hypothetical protein complement(702744..703346) Bordetella parapertussis 12822 1667253 NP_883006.1 CDS BPP0665 NC_002928.3 703387 704421 R Similar to Ralstonia solanacearum hypothetical protein Rsp1343 or Rs04767 or Rsp1312 or Rs05665 SWALL:Q8XFV7 (EMBL:AL646084) (388 aa) fasta scores: E(): 1e-06, 28.44% id in 327 aa, and to Streptomyces coelicolor oxidoreductase Sco6723 or Sc5f2a.06 SWALL:Q9X7M9 (EMBL:AL049587) (348 aa) fasta scores: E(): 9.5e-06, 28% id in 300 aa; hypothetical protein complement(703387..704421) Bordetella parapertussis 12822 1667254 NP_883007.1 CDS gst NC_002928.3 704674 705312 D Similar to Escherichia coli and Escherichia coli O157:H7 glutathione S-transferase Gst or B1635 or z2647 or ecs2344 SWALL:GT_ECOLI (SWALL:P39100) (201 aa) fasta scores: E(): 5.8e-28, 41.41% id in 198 aa, and to Yersinia pestis glutathione S-transferase Gst or Ypo2367 SWALL:Q8ZE22 (EMBL:AJ414152) (201 aa) fasta scores: E(): 3e-31, 43.28% id in 201 aa; glutathione S-transferase 704674..705312 Bordetella parapertussis 12822 1666219 NP_883008.1 CDS BPP0667 NC_002928.3 705350 706315 D Similar to Agrobacterium tumefaciens hypothetical protein Atu4727 or Agr_l_312 SWALL:AAK88723 (EMBL:AE009401) (329 aa) fasta scores: E(): 6.1e-38, 40.82% id in 316 aa, and to Ralstonia solanacearum signal peptide protein Rsc3088 or Rs00540 SWALL:Q8XUU5 (EMBL:AL646073) (317 aa) fasta scores: E(): 2.6e-37, 42.02% id in 307 aa; hypothetical protein 705350..706315 Bordetella parapertussis 12822 1666220 NP_883009.1 CDS BPP0668 NC_002928.3 706361 707347 R Similar to Agrobacterium tumefaciens hypothetical protein Atu4727 or Agr_l_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 3.5e-29, 37.07% id in 321 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 5.6e-21, 35.92% id in 270 aa; hypothetical protein complement(706361..707347) Bordetella parapertussis 12822 1666221 NP_883010.1 CDS BPP0669 NC_002928.3 707490 708188 R Similar to Yersinia pestis GntR-family transcriptional regulatory protein Ypo3651 SWALL:Q8ZAY1 (EMBL:AJ414158) (220 aa) fasta scores: E(): 5.3e-27, 45.63% id in 206 aa, and to Rhizobium loti transcriptional regulator Mll6786 SWALL:Q988D5 (EMBL:AP003010) (223 aa) fasta scores: E(): 5.2e-22, 43.84% id in 203 aa; GntR family transcriptional regulator complement(707490..708188) Bordetella parapertussis 12822 1666222 NP_883011.1 CDS BPP0670 NC_002928.3 708402 709925 D Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or B2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 6.1e-40, 32.1% id in 461 aa, and to Rhizobium meliloti aldehyde dehydrogenase transmembrane protein R03290 or Smc04385 SWALL:Q92L07 (EMBL:AL591793) (510 aa) fasta scores: E(): 2e-129, 68.87% id in 498 aa; aldehyde dehydrogenase 708402..709925 Bordetella parapertussis 12822 1666223 NP_883012.1 CDS metC NC_002928.3 709942 711105 D Similar to Escherichia coli cystathionine beta-lyase MetC or B3008 SWALL:METC_ECOLI (SWALL:P06721) (395 aa) fasta scores: E(): 1.7e-59, 43.07% id in 390 aa, and to Rhizobium meliloti probable cystathionine beta-lyase MetC or R01479 or Smc02117 SWALL:Q92Q70 (EMBL:AL591787) (395 aa) fasta scores: E(): 7.5e-66, 47.54% id in 387 aa; cystathionine beta-lyase 709942..711105 Bordetella parapertussis 12822 1666484 NP_883013.1 CDS BPP0672 NC_002928.3 711136 711486 D Similar to Rhizobium meliloti hypothetical protein R00736 or Smc00791 SWALL:Q92RV5 (EMBL:AL591784) (114 aa) fasta scores: E(): 2.1e-18, 54.86% id in 113 aa, and to Neisseria meningitidis hypothetical protein Nma1463 SWALL:Q9JU73 (EMBL:AL162756) (120 aa) fasta scores: E(): 3.9e-16, 45.61% id in 114 aa; hypothetical protein 711136..711486 Bordetella parapertussis 12822 1666485 NP_883014.1 CDS BPP0673 NC_002928.3 711789 712748 D Similar to Bacillus halodurans hypothetical protein Bh2007 SWALL:Q9KBC1 (EMBL:AP001514) (339 aa) fasta scores: E(): 1.6e-26, 32.43% id in 296 aa, and to Alcaligenes eutrophus hypothetical 35.6 kDa protein in gbd 5'region precursor SWALL:YGB7_ALCEU (SWALL:Q44018) (327 aa) fasta scores: E(): 5.2e-22, 29.61% id in 314 aa; hypothetical protein 711789..712748 Bordetella parapertussis 12822 1666486 NP_883015.1 CDS BPP0674 NC_002928.3 712773 713885 D Similar to Yersinia pestis hypothetical protein Ypo1516 SWALL:Q8ZG04 (EMBL:AJ414148) (418 aa) fasta scores: E(): 4.1e-27, 30.97% id in 410 aa; hypothetical protein 712773..713885 Bordetella parapertussis 12822 1666487 NP_883016.1 CDS BPP0675 NC_002928.3 713900 714922 D Similar to Rhizobium meliloti hypothetical protein R02870 or Smc02978 SWALL:Q92LZ1 (EMBL:AL591792) (368 aa) fasta scores: E(): 9.2e-57, 58.51% id in 364 aa, and to Brucella melitensis low affinity zinc transport membrane protein Bmeii0308 SWALL:Q8YD69 (EMBL:AE009669) (372 aa) fasta scores: E(): 7e-57, 60.71% id in 364 aa; hypothetical protein 713900..714922 Bordetella parapertussis 12822 1666488 NP_883017.1 CDS BPP0676 NC_002928.3 714919 715920 D Similar to Brucella melitensis vegetatible incompatibility protein Het-e-1 bmeii0307 SWALL:Q8YD70 (EMBL:AE009669) (324 aa) fasta scores: E(): 2.2e-45, 39.45% id in 327 aa, and to Rhizobium meliloti hypothetical protein R02871 or Smc02979 SWALL:Q92JW5 (EMBL:AL591792) (329 aa) fasta scores: E(): 1.2e-40, 38.36% id in 331 aa; hypothetical protein 714919..715920 Bordetella parapertussis 12822 1666489 NP_883018.1 CDS BPP0677 NC_002928.3 715923 716213 D no significant database matches; hypothetical protein 715923..716213 Bordetella parapertussis 12822 1666490 NP_883019.1 CDS BPP0678 NC_002928.3 716303 717046 D Similar to Escherichia coli transcriptional regulator KdgR or B1827 SWALL:KDGR_ECOLI (SWALL:P76268) (263 aa) fasta scores: E(): 1.3e-22, 36.32% id in 245 aa, and to Bacillus halodurans transcriptional regulator KdgR or Bh3725 SWALL:Q9K6K4 (EMBL:AP001519) (251 aa) fasta scores: E(): 7.5e-28, 38.34% id in 253 aa; transcriptional regulator 716303..717046 Bordetella parapertussis 12822 1668372 NP_883020.1 CDS dapA NC_002928.3 717439 718329 D Similar to Escherichia coli dihydrodipicolinate synthase DapA or B2478 SWALL:DAPA_ECOLI (SWALL:P05640) (292 aa) fasta scores: E(): 6.6e-20, 30.37% id in 270 aa, and to Brucella melitensis dihydrodipicolinate synthase Bmei1301 SWALL:Q8YG60 (EMBL:AE009568) (307 aa) fasta scores: E(): 9.5e-27, 34.82% id in 290 aa; dihydrodipicolinate synthase 717439..718329 Bordetella parapertussis 12822 1668373 NP_883021.1 CDS aatB NC_002928.3 718330 719565 D Similar to Rhizobium meliloti aspartate aminotransferase B aatB SWALL:AAB2_RHIME (SWALL:Q06191) (410 aa) fasta scores: E(): 1.8e-61, 46.07% id in 395 aa, and to Ralstonia solanacearum probable aspartate aminotransferase a protein AatA1 or Rsp1232 or Rs03176 SWALL:Q8XQJ3 (EMBL:AL646083) (404 aa) fasta scores: E(): 3e-62, 49.48% id in 386 aa; aspartate aminotransferase 718330..719565 Bordetella parapertussis 12822 1668374 NP_883022.1 CDS BPP0681 NC_002928.3 719650 720480 D Similar to Escherichia coli cystine-binding periplasmic protein precursor FliY or B1920 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 5.1e-23, 30.64% id in 248 aa, and to Salmonella typhi cystine-binding periplasmic protein FliY or Sty2162 SWALL:Q8Z5S8 (EMBL:AL627272) (266 aa) fasta scores: E(): 1.1e-23, 32.25% id in 248 aa; solute-binding periplasmic protein 719650..720480 Bordetella parapertussis 12822 1668375 NP_883023.1 CDS BPP0682 NC_002928.3 720477 721127 D Similar to Salmonella typhimurium and Salmonella typhi ABC-type amino acid transporter, permease component yecs or stm1952 or sty2160 SWALL:Q8XET2 (EMBL:AE008786) (222 aa) fasta scores: E(): 3.1e-34, 46.47% id in 213 aa, and to Escherichia coli O157:H7 transport system permease YecS or Z3006 or Ecs2656 SWALL:Q8XBC8 (EMBL:AE005414) (222 aa) fasta scores: E(): 1.8e-33, 44.34% id in 212 aa; permease component of ABC transporter 720477..721127 Bordetella parapertussis 12822 1668376 NP_883024.1 CDS BPP0683 NC_002928.3 721127 721903 D Similar to Agrobacterium tumefaciens octopine permease ATP-binding protein p occP SWALL:OCCP_AGRTU (SWALL:P35117) (262 aa) fasta scores: E(): 5.5e-41, 53.2% id in 250 aa, and to Yersinia pestis amino-acid ABC transporter Ypo1848 SWALL:Q8ZF70 (EMBL:AJ414150) (253 aa) fasta scores: E(): 1.6e-40, 54.87% id in 246 aa; ABC transporter ATP-binding protein 721127..721903 Bordetella parapertussis 12822 1668377 NP_883025.1 CDS BPP0684 NC_002928.3 721900 723105 D Similar to Ralstonia solanacearum hippurate hydrolase HipO or Rsc2871 or Rs00232 SWALL:Q8XVG0 (EMBL:AL646072) (396 aa) fasta scores: E(): 7.6e-64, 51.2% id in 375 aa, and to Pseudomonas aeruginosa probable hydrolase pa2922 SWALL:Q9HZS5 (EMBL:AE004718) (389 aa) fasta scores: E(): 5e-54, 46.82% id in 378 aa; peptidase 721900..723105 Bordetella parapertussis 12822 1668378 NP_883026.1 CDS BPP0685 NC_002928.3 723178 723975 D Similar to Rhodococcus opacus regulator of catechol degradative operon CatR SWALL:O33539 (EMBL:X99622) (256 aa) fasta scores: E(): 1.2e-19, 29.13% id in 254 aa, and to Alcaligenes eutrophus hypothetical 30.8 kDa protein SWALL:Q9L789 (EMBL:AF225972) (279 aa) fasta scores: E(): 2.4e-23, 37.25% id in 255 aa; transcriptional regulator 723178..723975 Bordetella parapertussis 12822 1668379 NP_883027.1 CDS amaB NC_002928.3 724013 725284 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 724013..725284 Bordetella parapertussis 12822 1668380 NP_883028.1 CDS BPP0687 NC_002928.3 725281 726555 R Similar to Bradyrhizobium japonicum malonamidase E2 SWALL:Q9ZIV5 (EMBL:AF012735) (414 aa) fasta scores: E(): 2.7e-39, 37.67% id in 422 aa, and to Rhodococcus sp enantiomerase-selective amidase AmdA SWALL:Q53116 (EMBL:M74531) (462 aa) fasta scores: E(): 7.4e-21, 31.73% id in 438 aa; amidase complement(725281..726555) Bordetella parapertussis 12822 1668381 NP_883029.1 CDS BPP0688 NC_002928.3 726564 727490 R Similar to Pseudomonas aeruginosa hypothetical protein Pa1517 SWALL:Q9I3J6 (EMBL:AE004580) (308 aa) fasta scores: E(): 1.6e-63, 51.17% id in 297 aa, and to Caulobacter crescentus hypothetical protein Cc2605 SWALL:Q9A559 (EMBL:AE005928) (304 aa) fasta scores: E(): 1.7e-59, 49.15% id in 295 aa; polysaccharide deacetylase complement(726564..727490) Bordetella parapertussis 12822 1668382 NP_883030.1 CDS allA NC_002928.3 727487 727978 R catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase complement(727487..727978) Bordetella parapertussis 12822 1668383 NP_883031.1 CDS BPP0690 NC_002928.3 727995 729287 R Similar to Agrobacterium tumefaciens transmembrane protein DctM SWALL:Q9F7C8 (EMBL:AF282677) (416 aa) fasta scores: E(): 1.1e-51, 39.33% id in 422 aa, and to Rhizobium meliloti hypothetical protein Ra0081 or Sma0151 SWALL:Q930W3 (EMBL:AE007202) (866 aa) fasta scores: E(): 5.4e-45, 37.62% id in 388 aa; hypothetical protein complement(727995..729287) Bordetella parapertussis 12822 1668384 NP_883032.1 CDS BPP0691 NC_002928.3 729287 729901 R Similar to Bacillus halodurans C4-dicarboxylate transport system Bh3392 SWALL:Q9K7G9 (EMBL:AP001518) (175 aa) fasta scores: E(): 3.6e-05, 29.63% id in 162 aa, and to Rhizobium meliloti permease Rb0286 or Smb20296 SWALL:Q92WP3 (EMBL:AL603642) (172 aa) fasta scores: E(): 0.081, 26.82% id in 164 aa; hypothetical protein complement(729287..729901) Bordetella parapertussis 12822 1668385 NP_883033.1 CDS BPP0692 NC_002928.3 729964 731010 R Similar to Rhodobacter capsulatus c4-dicarboxylate-binding periplasmic protein precursor DctP SWALL:DCTP_RHOCA (SWALL:P37735) (333 aa) fasta scores: E(): 1.7e-05, 25.17% id in 290 aa, and to Rhizobium meliloti hypothetical protein Ra0083 or Sma0157 SWALL:Q930W1 (EMBL:AE007202) (334 aa) fasta scores: E(): 4.1e-06, 25.94% id in 239 aa; extracellular solute-binding protein complement(729964..731010) Bordetella parapertussis 12822 1668386 NP_883034.1 CDS BPP0693 NC_002928.3 731152 732057 D Similar to Caulobacter crescentus transcriptional regulator, LysR family Cc1621 SWALL:Q9A7U8 (EMBL:AE005837) (298 aa) fasta scores: E(): 8.1e-23, 32.65% id in 297 aa, and to Rhizobium meliloti transcriptional regulator, LysR family protein Rb1494 or Smb20582 SWALL:Q92TL7 (EMBL:AL603647) (306 aa) fasta scores: E(): 1.3e-22, 27.21% id in 294 aa; LysR family transcriptional regulator 731152..732057 Bordetella parapertussis 12822 1668387 NP_883035.1 CDS BPP0694 NC_002928.3 732159 732545 D Similar to Caulobacter crescentus hypothetical protein Cc1215 SWALL:YC15_CAUCR (SWALL:Q9A8Y2) (153 aa) fasta scores: E(): 3.1, 28.69% id in 115 aa; hypothetical protein 732159..732545 Bordetella parapertussis 12822 1668388 NP_883036.1 CDS BPP0695 NC_002928.3 732542 733225 R Similar to Brucella melitensis transcriptional regulator, GntR family Bmeii0281 SWALL:Q8YD96 (EMBL:AE009666) (238 aa) fasta scores: E(): 3.9e-13, 33.64% id in 214 aa, and to Rhizobium loti transcriptional regulator Mll6988 SWALL:Q987M8 (EMBL:AP003010) (220 aa) fasta scores: E(): 4.2e-13, 31.96% id in 219 aa; GntR family transcriptional regulator complement(732542..733225) Bordetella parapertussis 12822 1668389 NP_883037.1 CDS BPP0696 NC_002928.3 733497 733982 D Similar to Clostridium acetobutylicum possible pectin degradation protein Cac3376 SWALL:Q97DU5 (EMBL:AE007834) (114 aa) fasta scores: E(): 0.66, 37.87% id in 66 aa, and to Thermoplasma volcanium hypothetical protein Tv0214 or Tvg0221806 SWALL:Q97C89 (EMBL:AP000991) (121 aa) fasta scores: E(): 1.5, 25.37% id in 67 aa; hypothetical protein 733497..733982 Bordetella parapertussis 12822 1668390 NP_883038.1 CDS BPP0697 NC_002928.3 734082 734606 D Similar to Anabaena sp. hypothetical protein Alr3026 SWALL:Q8YSQ8 (EMBL:AP003591) (184 aa) fasta scores: E(): 9e-13, 31.97% id in 172 aa, and to Brucella melitensis tripartite transporter, small subunit Bmei1581 SWALL:Q8YFE1 (EMBL:AE009593) (182 aa) fasta scores: E(): 1.7e-10, 32.09% id in 162 aa; hypothetical protein 734082..734606 Bordetella parapertussis 12822 1668391 NP_883039.1 CDS BPP0698 NC_002928.3 734603 735958 D Similar to Synechocystis sp. hypothetical protein Sll1103 SWALL:P74224 (EMBL:D90913) (445 aa) fasta scores: E(): 6.8e-66, 44.98% id in 449 aa, and to Anabaena sp. hypothetical protein Alr3027 SWALL:Q8YSQ7 (EMBL:AP003591) (445 aa) fasta scores: E(): 2.2e-61, 45.84% id in 445 aa; hypothetical protein 734603..735958 Bordetella parapertussis 12822 1668392 NP_883040.1 CDS BPP0699 NC_002928.3 735999 737123 D Similar to Anabaena sp. extracellular solute-binding protein All3028 SWALL:Q8YSQ6 (EMBL:AP003591) (364 aa) fasta scores: E(): 3.4e-44, 37.32% id in 359 aa, and to Synechocystis sp. hypothetical protein Slr1962 SWALL:P74100 (EMBL:D90912) (370 aa) fasta scores: E(): 1.1e-40, 35.44% id in 364 aa; extracellular solute-binding protein 735999..737123 Bordetella parapertussis 12822 1668393 NP_883041.1 CDS glyA NC_002928.3 738684 739976 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(738684..739976) Bordetella parapertussis 12822 1668395 NP_883042.1 CDS benE NC_002928.3 739973 741208 R Similar to Acinetobacter calcoaceticus benzoate membrane transport protein BenE SWALL:BENE_ACICA (SWALL:P07775) (394 aa) fasta scores: E(): 7e-57, 41.55% id in 385 aa, and to Pseudomonas putida BenE SWALL:Q9L7Y0 (EMBL:AF218267) (399 aa) fasta scores: E(): 8.5e-65, 47.1% id in 380 aa; benzoate membrane transport protein complement(739973..741208) Bordetella parapertussis 12822 1668396 NP_883043.1 CDS BPP0703 NC_002928.3 741447 741911 D Similar to Pseudomonas aeruginosa probable oxidoreductase Pa2379 SWALL:Q9I1A0 (EMBL:AE004664) (156 aa) fasta scores: E(): 3.2e-39, 65.33% id in 150 aa, and to Ralstonia solanacearum probable aldehyde dehydrogenase Rsc0626 or Rs01528 SWALL:Q8Y1R3 (EMBL:AL646060) (152 aa) fasta scores: E(): 1.6e-38, 68.24% id in 148 aa; oxidoreductase 741447..741911 Bordetella parapertussis 12822 1668397 NP_883044.1 CDS BPP0704 NC_002928.3 741908 744259 D Similar to Pseudomonas aeruginosa probable aldehyde dehydrogenase Pa2378 SWALL:Q9I1A1 (EMBL:AE004664) (771 aa) fasta scores: E(): 6.7e-179, 60.91% id in 765 aa, and to Caulobacter crescentus isoquinoline 1-oxidoreductase, beta subunit Cc2269 SWALL:Q9A626 (EMBL:AE005897) (724 aa) fasta scores: E(): 1.6e-57, 39.34% id in 760 aa; aldehyde dehydrogenase 741908..744259 Bordetella parapertussis 12822 1668398 NP_883045.1 CDS BPP0705 NC_002928.3 744328 745278 D Similar to Rhizobium meliloti transcriptional regulator protein Rb0123 or Smb20123 SWALL:Q92X39 (EMBL:AL603642) (298 aa) fasta scores: E(): 6e-28, 34.84% id in 287 aa, and to Agrobacterium tumefaciens transcriptional regulator, LysR family Atu4264 or Agr_l_1195 SWALL:AAK89175 (EMBL:AE009355) (298 aa) fasta scores: E(): 1.5e-22, 30.71% id in 293 aa; LysR family transcriptional regulator 744328..745278 Bordetella parapertussis 12822 1668399 NP_883046.1 CDS BPP0706 NC_002928.3 745275 745985 R Similar to Streptomyces coelicolor transcriptional regulator Sco6246 or Scah10.11C SWALL:Q9RKU6 (EMBL:AL132824) (270 aa) fasta scores: E(): 4.6e-09, 30.56% id in 265 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa3508 SWALL:Q9HYA1 (EMBL:AE004771) (277 aa) fasta scores: E(): 4.7e-09, 32.28% id in 223 aa; transcriptional regulator complement(745275..745985) Bordetella parapertussis 12822 1668400 NP_883047.1 CDS BPP0708 NC_002928.3 748488 748901 D Similar to Brucella melitensis hypothetical protein Bmeii1079 SWALL:Q8YB22 (EMBL:AE009740) (164 aa) fasta scores: E(): 2.8, 27.11% id in 118 aa; hypothetical protein 748488..748901 Bordetella parapertussis 12822 1668402 NP_883048.1 CDS BPP0709 NC_002928.3 748898 751447 D The C-terminal reggion of this CDS is similar to Caulobacter crescentus pentapeptide repeat family protein Cc0587 SWALL:Q9AAL0 (EMBL:AE005733) (371 aa) fasta scores: E(): 2.9e-09, 33.76% id in 311 aa, and to Methanosarcina acetivorans hypothetical protein Ma2354 SWALL:AAM05743 (EMBL:AE010924) (337 aa) fasta scores: E(): 1.8e-09, 26.31% id in 323 aa; hypothetical protein 748898..751447 Bordetella parapertussis 12822 1668403 NP_883049.1 CDS BPP0711 NC_002928.3 752527 753432 D The C-terminal region of this CDS is similar to the C-terminal regions of Bacillus subtilis hypothetical protein YqcG SWALL:YQCG_BACSU (SWALL:P45942) (531 aa) fasta scores: E(): 1.4e-15, 54.81% id in 135 aa, and to that of Clostridium acetobutylicum uncharacterized protein, YqcG b.subtilis homolog, Cf-7 family Cac1640 SWALL:Q97IK0 (EMBL:AE007673) (377 aa) fasta scores: E(): 0.0018, 31.2% id in 125 aa; hypothetical protein 752527..753432 Bordetella parapertussis 12822 1668473 NP_883050.1 CDS BPP0712 NC_002928.3 753473 754033 D Similar to Bacillus subtilis hypothetical protein YqcF SWALL:YQCF_BACSU (SWALL:P45941) (192 aa) fasta scores: E(): 2.3e-18, 36.02% id in 186 aa, and to Ralstonia solanacearum hypothetical protein Rsp1132 or Rs05507 SWALL:Q8XQT6 (EMBL:AL646083) (192 aa) fasta scores: E(): 8.8e-17, 36.02% id in 186 aa; hypothetical protein 753473..754033 Bordetella parapertussis 12822 1668474 NP_883051.1 CDS BPP0713 NC_002928.3 754606 755655 D Similar to Pseudomonas aeruginosa hypothetical protein Pa0082 SWALL:Q9I750 (EMBL:AE004447) (344 aa) fasta scores: E(): 1.4e-26, 35.89% id in 351 aa, and to Salmonella typhimurium and Salmonella enterica subsp. enterica serovar Typhimurium cytoplasmic protein Stm0266 or SciA SWALL:Q93IT5 (EMBL:AE008707) (351 aa) fasta scores: E(): 3.1e-14, 32.21% id in 357 aa; hypothetical protein 754606..755655 Bordetella parapertussis 12822 1668475 NP_883052.1 CDS BPP0714 NC_002928.3 755698 756261 D Similar to Pseudomonas aeruginosa hypothetical protein Pa0083 SWALL:Q9I749 (EMBL:AE004447) (172 aa) fasta scores: E(): 4.2e-42, 72.12% id in 165 aa, and to Salmonella typhimurium and Salmonella enterica subsp. enterica serovar Typhimurium cytoplasmic protein Stm0273 or SciH SWALL:Q93IS8 (EMBL:AE008707) (180 aa) fasta scores: E(): 1.2e-40, 68.53% id in 178 aa; hypothetical protein 755698..756261 Bordetella parapertussis 12822 1668476 NP_883053.1 CDS BPP0715 NC_002928.3 756283 757785 D Similar to Yersinia pestis hypothetical protein Ypo2938 SWALL:Q8ZCP0 (EMBL:AJ414154) (500 aa) fasta scores: E(): 1.7e-158, 74.03% id in 493 aa, and to Salmonella enterica subsp. enterica serovar Typhimurium SciI protein SWALL:Q93IS7 (EMBL:AJ320483) (497 aa) fasta scores: E(): 7.9e-156, 73.62% id in 489 aa; hypothetical protein 756283..757785 Bordetella parapertussis 12822 1668477 NP_883054.1 CDS BPP0716 NC_002928.3 757843 758328 D Similar to Pseudomonas aeruginosa hypothetical protein Pa0085 SWALL:Q9I747 (EMBL:AE004447) (162 aa) fasta scores: E(): 6.5e-21, 42.13% id in 159 aa, and to Salmonella typhimurium and Salmonella enterica subsp. enterica serovar Typhimurium cytoplasmic protein Stm0279 or SciM SWALL:Q93IS3 (EMBL:AE008707) (161 aa) fasta scores: E(): 4.1e-18, 36.64% id in 161 aa; hypothetical protein 757843..758328 Bordetella parapertussis 12822 1668478 NP_883055.1 CDS BPP0717 NC_002928.3 758378 759187 D Similar to Pseudomonas aeruginosa hypothetical protein Pa0086 SWALL:Q9I746 (EMBL:AE004447) (281 aa) fasta scores: E(): 2.3e-33, 45.13% id in 257 aa, and to Rhizobium leguminosarum ImpE SWALL:Q93EC9 (EMBL:AF361470) (276 aa) fasta scores: E(): 1.4e-11, 29.21% id in 267 aa; hypothetical protein 758378..759187 Bordetella parapertussis 12822 1668479 NP_883056.1 CDS BPP0718 NC_002928.3 759184 759702 D Similar to Pseudomonas aeruginosa hypothetical protein Pa0087 SWALL:Q9I745 (EMBL:AE004447) (169 aa) fasta scores: E(): 1.5e-21, 45.96% id in 161 aa, and to Salmonella typhimurium and Salmonella enterica subsp. enterica serovar Typhimurium cytoplasmic protein Stm0269 or SciD SWALL:Q93IT2 (EMBL:AE008707) (164 aa) fasta scores: E(): 2.1e-14, 35.33% id in 150 aa; hypothetical protein 759184..759702 Bordetella parapertussis 12822 1668480 NP_883057.1 CDS BPP0719 NC_002928.3 759702 761615 D Similar to Salmonella typhi hypothetical protein Sty0289 SWALL:Q8Z978 (EMBL:AL627266) (627 aa) fasta scores: E(): 5.5e-55, 45.69% id in 639 aa, and to Salmonella enterica subsp. enterica serovar Typhimurium SciC protein SWALL:Q93IT3 (EMBL:AJ320483) (627 aa) fasta scores: E(): 2.7e-54, 45.38% id in 639 aa; hypothetical protein 759702..761615 Bordetella parapertussis 12822 1668481 NP_883058.1 CDS BPP0720 NC_002928.3 761650 762309 D Similar to Yersinia pestis hypothetical protein Ypo0511 SWALL:Q8ZII7 (EMBL:AJ414143) (205 aa) fasta scores: E(): 0.72, 26.81% id in 179 aa; hypothetical protein 761650..762309 Bordetella parapertussis 12822 1668482 NP_883059.1 CDS BPP0721 NC_002928.3 762312 763406 D Similar to Pseudomonas aeruginosa hypothetical protein Pa0089 SWALL:Q9I743 (EMBL:AE004447) (348 aa) fasta scores: E(): 8.3e-46, 43.39% id in 348 aa, and to Yersinia pestis hypothetical protein Ypo2948 SWALL:Q8ZCN3 (EMBL:AJ414154) (341 aa) fasta scores: E(): 3.8e-34, 37.98% id in 337 aa; hypothetical protein 762312..763406 Bordetella parapertussis 12822 1668483 NP_883060.1 CDS BPP0722 NC_002928.3 763403 763936 D Similar to Salmonella typhimurium and Salmonella enterica subsp. enterica serovar Typhimurium cytoplasmic protein Stm0288 or SciV SWALL:Q93IR4 (EMBL:AE008708) (173 aa) fasta scores: E(): 1.6e-30, 47.9% id in 167 aa, and to Salmonella typhi hypothetical protein Sty0317 SWALL:Q8Z956 (EMBL:AL627266) (145 aa) fasta scores: E(): 1.7e-27, 51.07% id in 139 aa; hypothetical protein 763403..763936 Bordetella parapertussis 12822 1668484 NP_883061.1 CDS BPP0723 NC_002928.3 763926 764303 D Similar to Brucella melitensis hypothetical protein Bmeii1078 SWALL:Q8YB23 (EMBL:AE009740) (125 aa) fasta scores: E(): 9.3e-08, 40.54% id in 111 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1149 SWALL:Q9I4I6 (EMBL:AE004545) (122 aa) fasta scores: E(): 2.1e-06, 33.33% id in 123 aa; hypothetical protein 763926..764303 Bordetella parapertussis 12822 1668485 NP_883062.1 CDS BPP0724 NC_002928.3 764327 766900 D Similar to Salmonella typhimurium and Salmonella enterica subsp. enterica serovar Typhimurium ATPase with chaperone activity, homolog of yersinia ClpB Stm0272 or SciG SWALL:Q93IS9 (EMBL:AE008707) (879 aa) fasta scores: E(): 1.8e-131, 54.25% id in 881 aa, and to Salmonella typhi ClpB-like protein sty0294 SWALL:Q8Z973 (EMBL:AL627266) (887 aa) fasta scores: E(): 2e-130, 53.68% id in 881 aa; ATPase 764327..766900 Bordetella parapertussis 12822 1668486 NP_883063.1 CDS BPP0725 NC_002928.3 766999 767799 R Similar to Pseudomonas aeruginosa transcriptional regulatory protein AlgP or AlgR3 or Pa5253 SWALL:ALGP_PSEAE (SWALL:P15276) (352 aa) fasta scores: E(): 0.49, 29.77% id in 262 aa, and to Rhizobium loti probable esterase Mlr0240 SWALL:Q98N93 (EMBL:AP002994) (316 aa) fasta scores: E(): 0.93, 28.72% id in 275 aa; hypothetical protein complement(766999..767799) Bordetella parapertussis 12822 1668487 NP_883064.1 CDS BPP0726 NC_002928.3 767827 768222 R no significant database matches; lipoprotein complement(767827..768222) Bordetella parapertussis 12822 1668488 NP_883065.1 CDS BPP0727 NC_002928.3 768487 769029 D Similar to Pseudomonas aeruginosa hypothetical protein Pa1666 SWALL:Q9I359 (EMBL:AE004594) (168 aa) fasta scores: E(): 3.4e-14, 37.76% id in 143 aa, and to Salmonella typhi probable lipoprotein Sty0303 SWALL:Q8Z967 (EMBL:AL627266) (178 aa) fasta scores: E(): 1.2e-13, 31.21% id in 173 aa. Possible alternative translational start site; lipoprotein 768487..769029 Bordetella parapertussis 12822 1668489 NP_883066.1 CDS BPP0728 NC_002928.3 769075 770409 D Similar to Rhizobium leguminosarum ImpJ SWALL:Q93EC4 (EMBL:AF361470) (446 aa) fasta scores: E(): 2.2e-70, 46.1% id in 449 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0079 SWALL:Q9I753 (EMBL:AE004447) (444 aa) fasta scores: E(): 4.7e-79, 47.86% id in 445 aa; hypothetical protein 769075..770409 Bordetella parapertussis 12822 1668490 NP_883067.1 CDS BPP0729 NC_002928.3 770430 771710 D Similar to Pseudomonas aeruginosa hypothetical protein Pa0078 SWALL:Q9I754 (EMBL:AE004447) (449 aa) fasta scores: E(): 3.1e-68, 49.16% id in 417 aa, and to Salmonella typhimurium and Salmonella enterica subsp. enterica serovar Typhimurium outer membrane protein, OmpA family Stm0282 or SciP SWALL:Q93IS0 (EMBL:AE008707) (434 aa) fasta scores: E(): 2.8e-44, 38.94% id in 398 aa; hypothetical protein 770430..771710 Bordetella parapertussis 12822 1668491 NP_883068.1 CDS BPP0730 NC_002928.3 771707 775312 D Similar to Rhizobium leguminosarum ImpL SWALL:Q93EC2 (EMBL:AF361470) (1158 aa) fasta scores: E(): 2.3e-41, 32.42% id in 1209 aa, and to Rhizobium loti hypothetical protein Mlr2360 SWALL:Q98IK4 (EMBL:AP002999) (1176 aa) fasta scores: E(): 3.6e-108, 34.32% id in 1215 aa; hypothetical protein 771707..775312 Bordetella parapertussis 12822 1668492 NP_883069.1 CDS BPP0731 NC_002928.3 775309 776043 D Similar to Pseudomonas aeruginosa hypothetical protein Pa0076 SWALL:Q9I756 (EMBL:AE004446) (226 aa) fasta scores: E(): 1.6e-10, 31.79% id in 195 aa; hypothetical protein 775309..776043 Bordetella parapertussis 12822 1668493 NP_883070.1 CDS BPP0732 NC_002928.3 776068 777270 D Weakly similar to Micrococcus sp. 28 proline-rich extensin-like protein SWALL:Q8VPM8 (EMBL:AY034092) (406 aa) fasta scores: E(): 0.00013, 32.58% id in 267 aa; hypothetical protein 776068..777270 Bordetella parapertussis 12822 1668494 NP_883071.1 CDS BPP0734 NC_002928.3 778708 780120 D Similar to Rhizobium meliloti hypothetical protein Ra0574 or Sma1060 SWALL:Q92ZB6 (EMBL:AE007247) (465 aa) fasta scores: E(): 8.6e-54, 39.65% id in 459 aa, and to Listeria monocytogenes hypothetical protein Lmo0525 SWALL:Q8Y9K2 (EMBL:AL591975) (443 aa) fasta scores: E(): 5.1e-31, 32.23% id in 456 aa; lipoprotein 778708..780120 Bordetella parapertussis 12822 1668496 NP_883072.1 CDS BPP0735 NC_002928.3 780128 783082 R Similar to Agrobacterium tumefaciens autotransporter protein YapE or Atu5364 or Agr_pat_528 SWALL:AAL46052 (EMBL:AE008958) (868 aa) fasta scores: E(): 8.8e-38, 30.3% id in 881 aa, and to Bordetella pertussis BapA protein bapA SWALL:Q9F4B4 (EMBL:AJ277632) (903 aa) fasta scores: E(): 4.7e-21, 26.14% id in 895 aa; autotransporter complement(780128..783082) Bordetella parapertussis 12822 1668497 NP_883073.1 CDS modD NC_002928.3 785017 786126 R ortholog of Bordetella pertussis (BX470248) BP3093; molybdenum transport ATP-binding protein complement(785017..786126) Bordetella parapertussis 12822 1668499 NP_883074.1 CDS modC NC_002928.3 786138 786818 R ortholog of Bordetella pertussis (BX470248) BP3094; molybdenum transport system permease complement(786138..786818) Bordetella parapertussis 12822 1668500 NP_883075.1 CDS modB NC_002928.3 786840 787595 R ortholog of Bordetella pertussis (BX470248) BP3095; molybdate-binding periplasmic protein precursor complement(786840..787595) Bordetella parapertussis 12822 1668501 NP_883076.1 CDS BPP0740 NC_002928.3 787731 788615 R ortholog of Bordetella pertussis (BX470248) BP3096; hydrolase complement(787731..788615) Bordetella parapertussis 12822 1668502 NP_883077.1 CDS BPP0741 NC_002928.3 788640 789284 D ortholog of Bordetella pertussis (BX470248) BP3097; hypothetical protein 788640..789284 Bordetella parapertussis 12822 1668503 NP_883078.1 CDS BPP0742 NC_002928.3 789386 789508 R ortholog of Bordetella pertussis (BX470248) BP3098; hypothetical protein complement(789386..789508) Bordetella parapertussis 12822 1668504 NP_883079.1 CDS BPP0743 NC_002928.3 789554 789853 R ortholog of Bordetella pertussis (BX470248) BP3099; hypothetical protein complement(789554..789853) Bordetella parapertussis 12822 1668505 NP_883080.1 CDS BPP0744 NC_002928.3 790005 790484 R ortholog of Bordetella pertussis (BX470248) BP3100; hypothetical protein complement(790005..790484) Bordetella parapertussis 12822 1668506 NP_883081.1 CDS BPP0745 NC_002928.3 790500 790853 R Similar to Rhizobium meliloti hypothetical signal peptide protein Smc00030 or R00945 SWALL:Q92RD9 (EMBL:AL591785) (128 aa) fasta scores: E(): 0.00011, 28.31% id in 113 aa; hypothetical protein complement(790500..790853) Bordetella parapertussis 12822 1668507 NP_883082.1 CDS BPP0747 NC_002928.3 793010 793513 R ortholog of Bordetella pertussis (BX470248) BP3102; regulatory protein complement(793010..793513) Bordetella parapertussis 12822 1668509 NP_883083.2 CDS rocD NC_002928.3 793592 794833 D ortholog of Bordetella pertussis (BX470248) BP0539; ornithine--oxo-acid transaminase 793592..794833 Bordetella parapertussis 12822 1668510 NP_883084.1 CDS BPP0749 NC_002928.3 794830 795774 D ortholog of Bordetella pertussis (BX470248) BP0538; arginase 794830..795774 Bordetella parapertussis 12822 1668511 NP_883085.1 CDS BPP0750 NC_002928.3 795881 796831 D transposase for IS1002 element; IS1002 transposase 795881..796831 Bordetella parapertussis 12822 1668512 NP_883086.1 CDS BPP0751 NC_002928.3 796828 797721 R ortholog of Bordetella pertussis (BX470248) BP0176; two-component response regulator complement(796828..797721) Bordetella parapertussis 12822 1668513 NP_883087.1 CDS BPP0752 NC_002928.3 797950 798477 D ortholog of Bordetella pertussis (BX470248) BP0177; lipoprotein 797950..798477 Bordetella parapertussis 12822 1668514 NP_883088.1 CDS BPP0753 NC_002928.3 798569 799384 D ortholog of Bordetella pertussis (BX470248) BP0178; lipoprotein 798569..799384 Bordetella parapertussis 12822 1668515 NP_883089.1 CDS BPP0754 NC_002928.3 799445 800164 D ortholog of Bordetella pertussis (BX470248) BP0179; rhodanese superfamily protein 799445..800164 Bordetella parapertussis 12822 1668516 NP_883090.1 CDS metG NC_002928.3 800202 802280 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(800202..802280) Bordetella parapertussis 12822 1668517 NP_883091.1 CDS BPP0756 NC_002928.3 802530 802802 R ortholog of Bordetella pertussis (BX470248) BP0181; hypothetical protein complement(802530..802802) Bordetella parapertussis 12822 1668518 NP_883092.1 CDS BPP0757 NC_002928.3 802901 803983 D ortholog of Bordetella pertussis (BX470248) BP0182; iron sulfur binding protein 802901..803983 Bordetella parapertussis 12822 1668519 NP_883093.1 CDS BPP0758 NC_002928.3 803987 805891 D ortholog of Bordetella pertussis (BX470248) BP0183; hypothetical protein 803987..805891 Bordetella parapertussis 12822 1668520 NP_883094.1 CDS BPP0759 NC_002928.3 805888 809526 D ortholog of Bordetella pertussis (BX470248) BP0184; hypothetical protein 805888..809526 Bordetella parapertussis 12822 1668521 NP_883095.1 CDS dcd NC_002928.3 809587 810150 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 809587..810150 Bordetella parapertussis 12822 1668522 NP_883096.1 CDS BPP0761 NC_002928.3 810158 810580 R ortholog of Bordetella pertussis (BX470248) BP0186; hypothetical protein complement(810158..810580) Bordetella parapertussis 12822 1668523 NP_883097.1 CDS BPP0762 NC_002928.3 810608 811027 R ortholog of Bordetella pertussis (BX470248) BP0187; lyase complement(810608..811027) Bordetella parapertussis 12822 1668524 NP_883098.1 CDS BPP0763 NC_002928.3 811056 811574 R ortholog of Bordetella pertussis (BX470248) BP0188; acetyltransferase complement(811056..811574) Bordetella parapertussis 12822 1668525 NP_883099.1 CDS BPP0765 NC_002928.3 812279 814549 D ortholog of Bordetella pertussis (BX470248) BP0190; Orn/Arg/Lys decarboxylase 812279..814549 Bordetella parapertussis 12822 1668527 NP_883100.1 CDS BPP0766 NC_002928.3 814598 815830 D ortholog of Bordetella pertussis (BX470248) BP0191; hypothetical protein 814598..815830 Bordetella parapertussis 12822 1668528 NP_883101.1 CDS sodA NC_002928.3 815876 816568 D ortholog of Bordetella pertussis (BX470248) BP0193; superoxide dismutase 815876..816568 Bordetella parapertussis 12822 1668529 NP_883102.1 CDS gcvT NC_002928.3 817858 818958 D catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 817858..818958 Bordetella parapertussis 12822 1668531 NP_883103.1 CDS gcvH NC_002928.3 819103 819414 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 819103..819414 Bordetella parapertussis 12822 1668532 NP_883104.1 CDS gcvP NC_002928.3 819474 822338 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 819474..822338 Bordetella parapertussis 12822 1668533 NP_883105.1 CDS BPP0772 NC_002928.3 822798 823583 R ortholog of Bordetella pertussis (BX470248) BP0198; GntR family transcriptional regulator complement(822798..823583) Bordetella parapertussis 12822 1668534 NP_883106.1 CDS BPP0773 NC_002928.3 823608 824819 D ortholog of Bordetella pertussis (BX470248) BP0199; hypothetical protein 823608..824819 Bordetella parapertussis 12822 1668535 NP_883107.1 CDS BPP0774 NC_002928.3 824848 825816 D ortholog of Bordetella pertussis (BX470248) BP0200; hypothetical protein 824848..825816 Bordetella parapertussis 12822 1668536 NP_883108.1 CDS BPP0775 NC_002928.3 825813 826646 D ortholog of Bordetella pertussis (BX470248) BP0201; enoyl-CoA hydratase 825813..826646 Bordetella parapertussis 12822 1668537 NP_883109.1 CDS BPP0776 NC_002928.3 826697 828721 R Similar to Yersinia pestis exported protein Ypo2262 SWALL:Q8ZEB8 (EMBL:AJ414151) (514 aa) fasta scores: E(): 5.1e-35, 26.56% id in 527 aa, and to Escherichia coli O157:H7 hypothetical protein YdgA or Z2617 or Ecs2320 SWALL:Q8X676 (EMBL:AE005385) (502 aa) fasta scores: E(): 2.5e-33, 26.78% id in 489 aa; hypothetical protein complement(826697..828721) Bordetella parapertussis 12822 1668538 NP_883110.1 CDS BPP0777 NC_002928.3 828849 830297 R Similar to Yersinia pestis exported protein Ypo2262 SWALL:Q8ZEB8 (EMBL:AJ414151) (514 aa) fasta scores: E(): 8.7e-44, 32.04% id in 490 aa, and to Escherichia coli O157:H7 orf, hypothetical protein YdgA or Z2617 or Ecs2320 SWALL:Q8X676 (EMBL:AE005385) (502 aa) fasta scores: E(): 9.9e-35, 29.26% id in 492 aa; hypothetical protein complement(828849..830297) Bordetella parapertussis 12822 1668539 NP_883111.1 CDS BPP0778 NC_002928.3 830473 831948 R ortholog of Bordetella pertussis (BX470248) BP3163; hypothetical protein complement(830473..831948) Bordetella parapertussis 12822 1668540 NP_883112.1 CDS BPP0779 NC_002928.3 831992 833650 R ortholog of Bordetella pertussis (BX470248) BP3162; ABC transporter ATP-binding protein complement(831992..833650) Bordetella parapertussis 12822 1668541 NP_883113.1 CDS BPP0780 NC_002928.3 833654 834553 R ortholog of Bordetella pertussis (BX470248) BP3161; peptide ABC transporter permease complement(833654..834553) Bordetella parapertussis 12822 1668542 NP_883114.1 CDS BPP0781 NC_002928.3 834556 835497 R ortholog of Bordetella pertussis (BX470248) BP3160; ABC transporter permease complement(834556..835497) Bordetella parapertussis 12822 1668543 NP_883115.1 CDS BPP0782 NC_002928.3 835543 837108 R ortholog of Bordetella pertussis (BX470248) BP3159; extracellular solute-binding protein complement(835543..837108) Bordetella parapertussis 12822 1668544 NP_883116.1 CDS mmsA NC_002928.3 837394 838887 R ortholog of Bordetella pertussis (BX470248) BP3158; methylmalonate-semialdehyde dehydrogenase complement(837394..838887) Bordetella parapertussis 12822 1668545 NP_883117.1 CDS BPP0784 NC_002928.3 838919 840202 R catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase complement(838919..840202) Bordetella parapertussis 12822 1668546 NP_883118.1 CDS folA NC_002928.3 841845 842348 R ortholog of Bordetella pertussis (BX470248) BP3155; dihydrofolate reductase complement(841845..842348) Bordetella parapertussis 12822 1668641 NP_883119.1 CDS thyA NC_002928.3 842373 843344 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(842373..843344) Bordetella parapertussis 12822 1668642 NP_883120.1 CDS BPP0788 NC_002928.3 843411 843848 R ortholog of Bordetella pertussis (BX470248) BP3153; hypothetical protein complement(843411..843848) Bordetella parapertussis 12822 1668643 NP_883121.1 CDS BPP0789 NC_002928.3 843861 844640 D ortholog of Bordetella pertussis (BX470248) BP3152; hypothetical protein 843861..844640 Bordetella parapertussis 12822 1668644 NP_883122.1 CDS BPP0790 NC_002928.3 845368 846471 D ortholog of Bordetella pertussis (BX470248) BP3151; glycosyltransferase 845368..846471 Bordetella parapertussis 12822 1668645 NP_883123.1 CDS wbpO NC_002928.3 846478 847851 D ortholog of Bordetella pertussis (BX470248) BP3150; polysaccharide biosynthesis protein 846478..847851 Bordetella parapertussis 12822 1668646 NP_883124.1 CDS BPP0792 NC_002928.3 847863 848888 D ortholog of Bordetella pertussis (BX470248) BP3149; UDP-N-acetylglucosamine C4 epimerase 847863..848888 Bordetella parapertussis 12822 1668647 NP_883125.1 CDS BPP0793 NC_002928.3 848890 850260 D ortholog of Bordetella pertussis (BX470248) BP3148; hypothetical protein 848890..850260 Bordetella parapertussis 12822 1668648 NP_883126.1 CDS BPP0794 NC_002928.3 850261 851397 D ortholog of Bordetella pertussis (BX470248) BP3147; glycosyltransferase 850261..851397 Bordetella parapertussis 12822 1668649 NP_883127.1 CDS BPP0795 NC_002928.3 851444 853369 D ortholog of Bordetella pertussis (BX470248) BP3146; asparagine synthase 851444..853369 Bordetella parapertussis 12822 1668650 NP_883128.1 CDS BPP0796 NC_002928.3 853366 854499 D ortholog of Bordetella pertussis (BX470248) BP3145; glycosyltransferase 853366..854499 Bordetella parapertussis 12822 1668651 NP_883129.1 CDS BPP0797 NC_002928.3 854496 855650 D ortholog of Bordetella pertussis (BX470248) BP3144; glycosyltransferase 854496..855650 Bordetella parapertussis 12822 1668652 NP_883130.1 CDS BPP0798 NC_002928.3 855647 856777 D ortholog of Bordetella pertussis (BX470248) BP3143; glycosyltransferase 855647..856777 Bordetella parapertussis 12822 1668653 NP_883131.1 CDS pgi NC_002928.3 856785 858350 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(856785..858350) Bordetella parapertussis 12822 1668654 NP_883132.1 CDS pgm NC_002928.3 858357 859739 R ortholog of Bordetella pertussis (BX470248) BP3141; phosphoglucomutase complement(858357..859739) Bordetella parapertussis 12822 1668655 NP_883133.1 CDS BPP0801 NC_002928.3 859973 860629 D ortholog of Bordetella pertussis (BX470248) BP3140; hypothetical protein 859973..860629 Bordetella parapertussis 12822 1668656 NP_883134.1 CDS BPP0802 NC_002928.3 860721 862136 D ortholog of Bordetella pertussis (BX470248) BP3139; oxidoreductase 860721..862136 Bordetella parapertussis 12822 1668657 NP_883135.1 CDS BPP0803 NC_002928.3 862151 862861 D ortholog of Bordetella pertussis (BX470248) BP3138; two-component system response regulator 862151..862861 Bordetella parapertussis 12822 1668658 NP_883136.1 CDS BPP0804 NC_002928.3 862858 864180 D ortholog of Bordetella pertussis (BX470248) BP3137; two-component system sensor protein 862858..864180 Bordetella parapertussis 12822 1668659 NP_883137.1 CDS BPP0805 NC_002928.3 864260 866221 D ortholog of Bordetella pertussis (BX470248) BP3136; sulfatase 864260..866221 Bordetella parapertussis 12822 1668660 NP_883138.1 CDS fahA NC_002928.3 866410 867768 R ortholog of Bordetella pertussis (BX470248) BP3135; fumarylacetoacetase complement(866410..867768) Bordetella parapertussis 12822 1668661 NP_883139.1 CDS hmgA NC_002928.3 867832 869130 R An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine; homogentisate 1,2-dioxygenase complement(867832..869130) Bordetella parapertussis 12822 1668662 NP_883140.1 CDS BPP0808 NC_002928.3 869270 870490 D transposase for IS1001 element; transposase 869270..870490 Bordetella parapertussis 12822 1668663 NP_883141.1 CDS BPP0810 NC_002928.3 871545 871754 R ortholog of Bordetella pertussis (BX470248) BP3132; hypothetical protein complement(871545..871754) Bordetella parapertussis 12822 1668665 NP_883142.1 CDS BPP0811 NC_002928.3 871766 873445 R ortholog of Bordetella pertussis (BX470248) BP3131; FAD-dependent oxidoreductase complement(871766..873445) Bordetella parapertussis 12822 1668666 NP_883143.1 CDS BPP0812 NC_002928.3 873547 874566 R ortholog of Bordetella pertussis (BX470248) BP3130; cyclase complement(873547..874566) Bordetella parapertussis 12822 1668669 NP_883144.1 CDS mutM NC_002928.3 874590 875417 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(874590..875417) Bordetella parapertussis 12822 1668667 NP_883145.1 CDS BPP0814 NC_002928.3 875416 877296 D ortholog of Bordetella pertussis (BX470248) BP3128; hypothetical protein 875416..877296 Bordetella parapertussis 12822 1668668 NP_883146.1 CDS lolB NC_002928.3 877293 877892 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 877293..877892 Bordetella parapertussis 12822 1668981 NP_883147.1 CDS ipk NC_002928.3 877941 878840 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 877941..878840 Bordetella parapertussis 12822 1668982 NP_883148.1 CDS prsA NC_002928.3 879067 879999 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 879067..879999 Bordetella parapertussis 12822 1668670 NP_883149.1 CDS rplY NC_002928.3 880122 880736 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 880122..880736 Bordetella parapertussis 12822 1668671 NP_883150.1 CDS pth NC_002928.3 880814 881461 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 880814..881461 Bordetella parapertussis 12822 1668672 NP_883151.1 CDS BPP0820 NC_002928.3 881458 882240 D ortholog of Bordetella pertussis (BX470248) BP3122; hypothetical protein 881458..882240 Bordetella parapertussis 12822 1668679 NP_883152.1 CDS BPP0821 NC_002928.3 882313 883404 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 882313..883404 Bordetella parapertussis 12822 1668680 NP_883153.1 CDS BPP0822 NC_002928.3 883503 887405 R Similar to Serratia marcescens extracellular serine protease precursor SWALL:PRTS_SERMA (SWALL:P09489) (1045 aa) fasta scores: E(): 1.4e-26, 32.9% id in 626 aa, and to Rhizobium loti serine proteinase Mlr1935 SWALL:Q98JH8 (EMBL:AP002998) (1213 aa) fasta scores: E(): 5.2e-81, 33.51% id in 1262 aa; autotransporter complement(883503..887405) Bordetella parapertussis 12822 1668681 NP_883154.1 CDS BPP0823 NC_002928.3 888296 889867 D Its internal region is similar to many transcriptional regulators such as Rhizobium meliloti response regulator protein Rb0212 or Smb20219 SWALL:Q92WW5 (EMBL:AL603642) (245 aa) fasta scores: E(): 2.1e-05, 33.01% id in 103 aa, and to Rhodobacter sphaeroides DmsR SWALL:O32479 (EMBL:D89075) (232 aa) fasta scores: E(): 0.00018, 32% id in 100 aa; regulatory protein 888296..889867 Bordetella parapertussis 12822 1668682 NP_883155.1 CDS BPP0824 NC_002928.3 889918 890922 R Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 4.2e-28, 34.41% id in 340 aa, and to Rhizobium meliloti hypothetical protein Ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 6.8e-26, 33.53% id in 331 aa; hypothetical protein complement(889918..890922) Bordetella parapertussis 12822 1668683 NP_883156.1 CDS BPP0825 NC_002928.3 891295 892035 R Similar to Bacillus halodurans transcriptional regulator Bh3797 SWALL:Q9K6D2 (EMBL:AP001520) (202 aa) fasta scores: E(): 7.8e-19, 31.63% id in 196 aa, and to Streptomyces coelicolor TetR-family transcriptional regulator Sco5170 or Scp8.33C SWALL:Q9FBI8 (EMBL:AL390975) (213 aa) fasta scores: E(): 3.5e-06, 36.92% id in 130 aa; TetR family transcriptional regulator complement(891295..892035) Bordetella parapertussis 12822 1668684 NP_883157.1 CDS BPP0826 NC_002928.3 892262 893209 R no significant database matches; hypothetical protein complement(892262..893209) Bordetella parapertussis 12822 1668685 NP_883158.1 CDS BPP0827 NC_002928.3 893426 894601 D Similar to Ralstonia solanacearum drug transport transmembrane protein Rsc2316 or Rs01233 SWALL:Q8XX02 (EMBL:AL646069) (399 aa) fasta scores: E(): 3.4e-43, 39.17% id in 388 aa, and to Rhizobium loti hypothetical protein Mlr8412 mlr8412 SWALL:Q983A8 (EMBL:AP003014) (405 aa) fasta scores: E(): 1.6e-41, 36.73% id in 392 aa; hypothetical protein 893426..894601 Bordetella parapertussis 12822 1668686 NP_883159.1 CDS BPP0828 NC_002928.3 894648 895433 R ortholog of Bordetella pertussis (BX470248) BP3452; GntR family transcriptional regulator complement(894648..895433) Bordetella parapertussis 12822 1668687 NP_883160.1 CDS BPP0829 NC_002928.3 895430 897127 R catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; thiamine pyrophosphate protein complement(895430..897127) Bordetella parapertussis 12822 1668688 NP_883161.1 CDS BPP0830 NC_002928.3 897145 898110 R ortholog of Bordetella pertussis (BX470248) BP3454; lipoprotein complement(897145..898110) Bordetella parapertussis 12822 1668689 NP_883162.1 CDS BPP0831 NC_002928.3 898165 898947 R ortholog of Bordetella pertussis (BX470248) BP3455; taurine dioxygenase complement(898165..898947) Bordetella parapertussis 12822 1668690 NP_883163.1 CDS maeB NC_002928.3 899380 901668 R catalyzes the oxidative decarboxylation of malate to form pyruvate; malic enzyme complement(899380..901668) Bordetella parapertussis 12822 1668693 NP_883164.1 CDS BPP0833 NC_002928.3 901786 902781 D ortholog of Bordetella pertussis (BX470248) BP3457; LysR family regulatory protein 901786..902781 Bordetella parapertussis 12822 1668691 NP_883165.1 CDS BPP0834 NC_002928.3 903034 903975 D ortholog of Bordetella pertussis (BX470248) BP3458; binding-protein-dependent transport systems inner membrane component 903034..903975 Bordetella parapertussis 12822 1668692 NP_883166.1 CDS BPP0835 NC_002928.3 903975 904808 D ortholog of Bordetella pertussis (BX470248) BP3459; binding-protein-dependent transport systems inner membrane component 903975..904808 Bordetella parapertussis 12822 1668694 NP_883167.1 CDS BPP0836 NC_002928.3 904812 906662 D ortholog of Bordetella pertussis (BX470248) BP3460; ABC transporter ATP-binding protein 904812..906662 Bordetella parapertussis 12822 1668695 NP_883168.1 CDS BPP0839 NC_002928.3 909971 910912 R ortholog of Bordetella pertussis (BX470248) BP3463; LysR family regulatory protein complement(909971..910912) Bordetella parapertussis 12822 1668698 NP_883169.1 CDS BPP0840 NC_002928.3 910982 911821 D ortholog of Bordetella pertussis (BX470248) BP3464; hypothetical protein 910982..911821 Bordetella parapertussis 12822 1668699 NP_883170.1 CDS BPP0842 NC_002928.3 912381 912719 R ortholog of Bordetella pertussis (BX470248) BP3466; ArsR family transcriptional regulator complement(912381..912719) Bordetella parapertussis 12822 1668673 NP_883171.1 CDS BPP0843 NC_002928.3 913148 915667 D ortholog of Bordetella pertussis (BX470248) BP3467; hypothetical protein 913148..915667 Bordetella parapertussis 12822 1668674 NP_883172.1 CDS BPP0844 NC_002928.3 915664 916050 D ortholog of Bordetella pertussis (BX470248) BP3468; hypothetical protein 915664..916050 Bordetella parapertussis 12822 1668675 NP_883173.1 CDS BPP0845 NC_002928.3 916058 917275 R ortholog of Bordetella pertussis (BX470248) BP3469; transport protein complement(916058..917275) Bordetella parapertussis 12822 1668676 NP_883174.1 CDS fdx NC_002928.3 917272 917523 R ortholog of Bordetella pertussis (BX470248) BP3470; ferredoxin complement(917272..917523) Bordetella parapertussis 12822 1668677 NP_883175.1 CDS coaD NC_002928.3 917578 918087 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(917578..918087) Bordetella parapertussis 12822 1668678 NP_883176.1 CDS BPP0848 NC_002928.3 918108 918728 R ortholog of Bordetella pertussis (BX470248) BP3472; hypothetical protein complement(918108..918728) Bordetella parapertussis 12822 1666797 NP_883177.1 CDS ftsY NC_002928.3 918936 920003 D ortholog of Bordetella pertussis (BX470248) BP3473; cell division protein 918936..920003 Bordetella parapertussis 12822 1666798 NP_883178.1 CDS BPP0850 NC_002928.3 920050 921648 R ortholog of Bordetella pertussis (BX470248) BP3474; hypothetical protein complement(920050..921648) Bordetella parapertussis 12822 1666799 NP_883179.1 CDS BPP0851 NC_002928.3 921887 922708 R ortholog of Bordetella pertussis (BX470248) BP3476; binding-protein-dependent transport system permease complement(921887..922708) Bordetella parapertussis 12822 1666800 NP_883180.1 CDS BPP0852 NC_002928.3 922705 923604 R ortholog of Bordetella pertussis (BX470248) BP3477; binding-protein-dependent transport system inner membrane protein complement(922705..923604) Bordetella parapertussis 12822 1666801 NP_883181.1 CDS BPP0853 NC_002928.3 923592 924362 R ortholog of Bordetella pertussis (BX470248) BP3479; transport system ATP-binding protein complement(923592..924362) Bordetella parapertussis 12822 1667281 NP_883182.1 CDS BPP0854 NC_002928.3 924365 925372 R ortholog of Bordetella pertussis (BX470248) BP3481; hypothetical protein complement(924365..925372) Bordetella parapertussis 12822 1666239 NP_883183.1 CDS BPP0855 NC_002928.3 925521 926348 R ortholog of Bordetella pertussis (BX470248) BP3482; transcriptional regulator complement(925521..926348) Bordetella parapertussis 12822 1666240 NP_883184.1 CDS BPP0856 NC_002928.3 926354 927151 R ortholog of Bordetella pertussis (BX470248) BP3483; haloacid dehalogenase-like hydrolase complement(926354..927151) Bordetella parapertussis 12822 1666241 NP_883185.2 CDS ribB NC_002928.3 927297 928472 D bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 927297..928472 Bordetella parapertussis 12822 1666242 NP_883186.1 CDS ribH NC_002928.3 928486 929013 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 928486..929013 Bordetella parapertussis 12822 1666243 NP_883187.1 CDS nusB NC_002928.3 929021 929485 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 929021..929485 Bordetella parapertussis 12822 1666244 NP_883188.1 CDS thiL NC_002928.3 929525 930541 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 929525..930541 Bordetella parapertussis 12822 1666913 NP_883189.1 CDS BPP0861 NC_002928.3 930538 931080 D ortholog of Bordetella pertussis (BX470248) BP3488; phosphatidylglycerophosphatase 930538..931080 Bordetella parapertussis 12822 1666914 NP_883190.1 CDS BPP0862 NC_002928.3 931077 931643 D ortholog of Bordetella pertussis (BX470248) BP3489; hypothetical protein 931077..931643 Bordetella parapertussis 12822 1666915 NP_883191.1 CDS pyrF NC_002928.3 931782 932603 R OMP decarboxylase; OMPDCase; OMPdecase; type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(931782..932603) Bordetella parapertussis 12822 1666916 NP_883192.1 CDS ndh NC_002928.3 932611 933930 R ortholog of Bordetella pertussis (BX470248) BP3491; NADH dehydrogenase complement(932611..933930) Bordetella parapertussis 12822 1666917 NP_883193.1 CDS dgkA NC_002928.3 933981 934379 R ortholog of Bordetella pertussis (BX470248) BP3492; diacylglycerol kinase complement(933981..934379) Bordetella parapertussis 12822 1666918 NP_883194.1 CDS brkB NC_002928.3 934470 935360 R ortholog of Bordetella pertussis (BX470248) BP3493; serum resistance protein complement(934470..935360) Bordetella parapertussis 12822 1666919 NP_883195.1 CDS groEL NC_002928.3 938806 940449 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(938806..940449) Bordetella parapertussis 12822 1664759 NP_883196.1 CDS groES NC_002928.3 940482 940769 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(940482..940769) Bordetella parapertussis 12822 1664760 NP_883197.1 CDS BPP0870 NC_002928.3 941161 941790 R ortholog of Bordetella pertussis (BX470248) BP3497; hypothetical protein complement(941161..941790) Bordetella parapertussis 12822 1664761 NP_883198.1 CDS BPP0871 NC_002928.3 941787 942488 R ortholog of Bordetella pertussis (BX470248) BP3498; hypothetical protein complement(941787..942488) Bordetella parapertussis 12822 1664762 NP_883199.1 CDS BPP0872 NC_002928.3 942537 943172 R ortholog of Bordetella pertussis (BX470248) BP3499; hypothetical protein complement(942537..943172) Bordetella parapertussis 12822 1666064 NP_883200.1 CDS BPP0873 NC_002928.3 943216 944925 R proposed role in polysaccahride synthesis; FAD-binding dehydrogenase complement(943216..944925) Bordetella parapertussis 12822 1666065 NP_883201.1 CDS BPP0874 NC_002928.3 944987 945937 R ortholog of Bordetella pertussis (BX470248) BP3501; hypothetical protein complement(944987..945937) Bordetella parapertussis 12822 1666066 NP_883202.1 CDS BPP0876 NC_002928.3 946544 947557 R ortholog of Bordetella pertussis (BX470248) BP3503; LysR family transcriptional regulator complement(946544..947557) Bordetella parapertussis 12822 1666067 NP_883203.1 CDS BPP0877 NC_002928.3 947605 949350 D proposed role in polysaccahride synthesis; FAD-binding dehydrogenase 947605..949350 Bordetella parapertussis 12822 1666068 NP_883204.1 CDS BPP0878 NC_002928.3 949461 950426 D Similar to Comamonas testosteroni Orf4 protein SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 1.4e-35, 37.06% id in 313 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1e-30, 34.06% id in 320 aa; hypothetical protein 949461..950426 Bordetella parapertussis 12822 1666069 NP_883205.1 CDS BPP0879 NC_002928.3 950463 951215 R Similar to Bacillus halodurans transcriptional regulator Bh2137 SWALL:Q9KAZ9 (EMBL:AP001514) (251 aa) fasta scores: E(): 1.3e-14, 29.52% id in 254 aa, and to Streptomyces coelicolor iclr-family transcriptional regulator Sco2544 or Scc77.11 SWALL:Q9RDE7 (EMBL:AL136503) (265 aa) fasta scores: E(): 2e-13, 30.95% id in 252 aa; transcriptional regulator complement(950463..951215) Bordetella parapertussis 12822 1666070 NP_883206.1 CDS BPP0880 NC_002928.3 951330 951713 R Similar to Agrobacterium tumefaciens gamma carboxymuconolactone decarboxylase PcaC or Atu4541 or agr_l_653 SWALL:Q9KX42 (EMBL:U32867) (144 aa) fasta scores: E(): 3.3e-10, 35.34% id in 116 aa, and to Yersinia pestis gamma carboxymuconolactone decarboxylase Ypo3649 SWALL:Q8ZAY3 (EMBL:AJ414158) (131 aa) fasta scores: E(): 7.9e-16, 42.14% id in 121 aa; carboxymuconolactone decarboxylase complement(951330..951713) Bordetella parapertussis 12822 1665143 NP_883207.1 CDS BPP0882 NC_002928.3 952891 953577 R Similar to Pseudomonas aeruginosa probable hydrolase Pa2419 SWALL:Q9I162 (EMBL:AE004669) (226 aa) fasta scores: E(): 8.3e-73, 88.68% id in 221 aa, and to Salmonella typhimurium and Salmonella typhi SlsA or Stm3761 or Sty4025 SWALL:Q9Z622 (EMBL:AF106566) (226 aa) fasta scores: E(): 3.4e-66, 80.54% id in 221 aa; hydrolase complement(952891..953577) Bordetella parapertussis 12822 1668281 NP_883208.1 CDS BPP0883 NC_002928.3 954122 955753 D Similar to Escherichia coli glycolate permease GlcA or B2975 SWALL:GLCA_ECOLI (SWALL:Q46839) (560 aa) fasta scores: E(): 1.5e-27, 25% id in 560 aa, and to Campylobacter jejuni L-lactate permease LctP or Cj0076C SWALL:Q9PJ45 (EMBL:AL139074) (560 aa) fasta scores: E(): 4.2e-30, 26.48% id in 555 aa; lactate permease 954122..955753 Bordetella parapertussis 12822 1668282 NP_883209.1 CDS BPP0884 NC_002928.3 955765 955962 D no significant database matches; hypothetical protein 955765..955962 Bordetella parapertussis 12822 1668283 NP_883210.1 CDS ggt NC_002928.3 956006 957667 D Similar to Escherichia coli gamma-glutamyltranspeptidase precursor Ggt or B3447 SWALL:GGT_ECOLI (SWALL:P18956) (580 aa) fasta scores: E(): 1.6e-47, 31.47% id in 556 aa, and to Salmonella typhi gamma-glutamyltranspeptidase Ggt or sty4260 SWALL:Q8Z242 (EMBL:AL627281) (580 aa) fasta scores: E(): 1.1e-48, 32.19% id in 556 aa; gamma-glutamyltranspeptidase 956006..957667 Bordetella parapertussis 12822 1668284 NP_883211.1 CDS BPP0886 NC_002928.3 957686 958147 D Similar to Brucella melitensis universal stress protein family Bmei0102 SWALL:Q8YJI1 (EMBL:AE009453) (149 aa) fasta scores: E(): 5.8e-12, 43.04% id in 151 aa, and to Ralstonia solanacearum hypothetical protein Rsp1159 or Rs05426 SWALL:Q8XQR2 (EMBL:AL646083) (146 aa) fasta scores: E(): 6.5e-11, 37.9% id in 153 aa; universal stress protein 957686..958147 Bordetella parapertussis 12822 1668285 NP_883212.1 CDS BPP0887 NC_002928.3 958165 958638 R Similar to Caulobacter crescentus acetyltransferase, GnaT family Cc0191 SWALL:Q9ABN5 (EMBL:AE005693) (179 aa) fasta scores: E(): 2.2e-11, 35.82% id in 134 aa, and to Bacillus halodurans hypothetical protein Bh0478 SWALL:Q9KFK1 (EMBL:AP001508) (157 aa) fasta scores: E(): 4.8e-12, 31.61% id in 155 aa; GNAT family acetyltransferase complement(958165..958638) Bordetella parapertussis 12822 1668286 NP_883213.1 CDS BPP0888 NC_002928.3 958749 960596 R Similar to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase Pa3593 SWALL:Q9HY33 (EMBL:AE004779) (575 aa) fasta scores: E(): 8.5e-102, 48.16% id in 571 aa, and to Mycobacterium tuberculosis acyl CoA dehydrogenase FadE35 or Rv3797 or Mtv026.02 or Mt3904 SWALL:O53577 (EMBL:AL022076) (593 aa) fasta scores: E(): 4.7e-43, 33.78% id in 586 aa; acyl-CoA dehydrogenase complement(958749..960596) Bordetella parapertussis 12822 1667132 NP_883214.1 CDS BPP0889 NC_002928.3 960630 961856 R Similar to Acinetobacter sp. NCIMB9871 L-carnitine dehydrogenase-like protein Orf17 SWALL:Q93RL7 (EMBL:AB026669) (405 aa) fasta scores: E(): 9.9e-83, 52.22% id in 404 aa, and to Brucella melitensis alpha-methylacyl-CoA racemase Bmeii1019 SWALL:Q8YB81 (EMBL:AE009734) (415 aa) fasta scores: E(): 1.5e-85, 52.85% id in 403 aa; hypothetical protein complement(960630..961856) Bordetella parapertussis 12822 1667133 NP_883215.1 CDS BPP0890 NC_002928.3 961905 962894 R Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 7.1e-38, 40.55% id in 323 aa, and to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 4.2e-44, 41.12% id in 321 aa; hypothetical protein complement(961905..962894) Bordetella parapertussis 12822 1667134 NP_883216.1 CDS BPP0891 NC_002928.3 963035 963928 D Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa3594 SWALL:Q9HY32 (EMBL:AE004780) (295 aa) fasta scores: E(): 1.8e-47, 46.1% id in 295 aa, and to Ralstonia solanacearum probable transcription regulator protein Rsp1357 or Rs04822 or Rsp1326 or Rs05669 SWALL:Q8XFS3 (EMBL:AL646084) (306 aa) fasta scores: E(): 1e-38, 41.39% id in 302 aa; LysR family transcriptional regulator 963035..963928 Bordetella parapertussis 12822 1667135 NP_883217.1 CDS BPP0892 NC_002928.3 964067 964756 D no significant database matches; hypothetical protein 964067..964756 Bordetella parapertussis 12822 1667136 NP_883218.1 CDS BPP0893 NC_002928.3 964740 965723 R Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.7e-28, 31.05% id in 322 aa, and to Rhizobium meliloti hypothetical protein Ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.9e-31, 34.96% id in 326 aa; hypothetical protein complement(964740..965723) Bordetella parapertussis 12822 1667137 NP_883219.1 CDS BPP0894 NC_002928.3 965804 966544 R Similar to Pseudomonas aeruginosa hypothetical protein Pa3775 SWALL:Q9HXM0 (EMBL:AE004796) (260 aa) fasta scores: E(): 2.6e-15, 36.48% id in 233 aa, and to Rhizobium meliloti hypothetical protein Rb0277 or Smb20287 SWALL:Q92WQ2 (EMBL:AL603642) (235 aa) fasta scores: E(): 4.4e-06, 28.93% id in 235 aa; hypothetical protein complement(965804..966544) Bordetella parapertussis 12822 1664962 NP_883220.1 CDS BPP0895 NC_002928.3 966560 968089 R Similar to Ralstonia solanacearum hypothetical protein Rsp1573 or Rs02129 SWALL:Q8XPR5 (EMBL:AL646085) (494 aa) fasta scores: E(): 1.2e-45, 34.28% id in 493 aa, and to Rhizobium loti hypothetical protein Mlr6294 SWALL:Q989S9 (EMBL:AP003008) (525 aa) fasta scores: E(): 9.8e-42, 33.46% id in 520 aa; hypothetical protein complement(966560..968089) Bordetella parapertussis 12822 1664963 NP_883221.1 CDS BPP0896 NC_002928.3 968102 969100 R Similar to Comamonas testosteroni OrfJ protein orfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.7e-25, 29.39% id in 330 aa, and to Comamonas testosteroni Orf4 protein SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 5.1e-25, 32.61% id in 325 aa; hypothetical protein complement(968102..969100) Bordetella parapertussis 12822 1664964 NP_883222.1 CDS BPP0897 NC_002928.3 969210 970127 D Similar to Ralstonia solanacearum probable transcription regulator protein Rsp1357 or Rs04822 or rsp1326 or rs05669 SWALL:Q8XFS3 (EMBL:AL646084) (306 aa) fasta scores: E(): 3.6e-23, 33.44% id in 308 aa, and to Clostridium acetobutylicum transcriptional regulator, LysR family Cac2394 SWALL:Q97GH3 (EMBL:AE007739) (286 aa) fasta scores: E(): 3.1e-22, 29.41% id in 289 aa; LysR family transcriptional regulator 969210..970127 Bordetella parapertussis 12822 1664965 NP_883223.1 CDS BPP0898 NC_002928.3 970124 971287 R Similar to Agrobacterium tumefaciens Ggdef family protein Atu1257 or Agr_c_2322 SWALL:Q8UFY7 (EMBL:AE009087) (415 aa) fasta scores: E(): 2.4e-21, 31.62% id in 389 aa, and to Rhizobium loti hypothetical protein Mll4271 SWALL:Q98EF2 (EMBL:AP003003) (398 aa) fasta scores: E(): 6.1e-17, 28.75% id in 400 aa; hypothetical protein complement(970124..971287) Bordetella parapertussis 12822 1664966 NP_883224.1 CDS BPP0899 NC_002928.3 971429 972871 R Similar to Agrobacterium tumefaciens opine oxidase subunit A OoxA SWALL:OOXA_AGRT4 (SWALL:Q59160) (503 aa) fasta scores: E(): 1.1e-73, 49.05% id in 475 aa, and to Rhizobium meliloti opine oxidase subunit A OoxA SWALL:OOA2_RHIME (SWALL:P72300) (526 aa) fasta scores: E(): 2.5e-71, 46.48% id in 469 aa; pyridine nucleotide-disulfide oxidoreductase complement(971429..972871) Bordetella parapertussis 12822 1664967 NP_883225.1 CDS BPP0900 NC_002928.3 972868 973176 R Similar to Streptomyces coelicolor hypothetical protein Sco6290 or Scbac8d1.03 SWALL:Q93RY2 (EMBL:AL591084) (84 aa) fasta scores: E(): 1.1e-10, 53.42% id in 73 aa, and to Agrobacterium tumefaciens hypothetical protein Tiorf192 or Atu6020 or Agr_pti_bx141 SWALL:Q9R690 (EMBL:AB016260) (97 aa) fasta scores: E(): 2.3e-08, 36.66% id in 90 aa; hypothetical protein complement(972868..973176) Bordetella parapertussis 12822 1665677 NP_883226.1 CDS BPP0901 NC_002928.3 973160 974314 R Similar to Agrobacterium tumefaciens opine oxidase subunit B OoxB SWALL:OOXB_AGRT4 (SWALL:Q59159) (371 aa) fasta scores: E(): 1.1e-54, 45.79% id in 369 aa, and to Rhizobium meliloti opine oxidase subunit B OoxB or Ra1199 or Sma2223 SWALL:OOB1_RHIME (SWALL:Q92XP5) (368 aa) fasta scores: E(): 4.6e-56, 46.44% id in 366 aa; FAD dependent oxidoreductase complement(973160..974314) Bordetella parapertussis 12822 1665678 NP_883227.1 CDS BPP0902 NC_002928.3 974342 975391 R Similar to Ralstonia solanacearum dipeptidase Rsp0056 or Rs02031 SWALL:Q8XTQ0 (EMBL:AL646076) (323 aa) fasta scores: E(): 2.2e-29, 33.33% id in 306 aa, and to Rhizobium loti hypothetical protein Mlr6286 SWALL:Q989T6 (EMBL:AP003008) (338 aa) fasta scores: E(): 1e-26, 30.59% id in 317 aa; dipeptidase complement(974342..975391) Bordetella parapertussis 12822 1665679 NP_883228.1 CDS BPP0903 NC_002928.3 975450 976568 R Similar to Rhizobium meliloti spermidineputrescine ABC transporter ATP-binding protein PotA or Rb0780 or Smb21276 SWALL:Q92VC8 (EMBL:AL603644) (342 aa) fasta scores: E(): 2.5e-47, 57.98% id in 238 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase Atu4424 or Agr_l_887 SWALL:AAL45218 (EMBL:AE009371) (341 aa) fasta scores: E(): 6.4e-45, 55.46% id in 238 aa; ABC transporter ATP-binding protein complement(975450..976568) Bordetella parapertussis 12822 1665680 NP_883229.1 CDS BPP0904 NC_002928.3 976565 977338 R Similar to Rhizobium meliloti ABC transporter, permease Ra0435 or Sma0802 SWALL:Q92ZM0 (EMBL:AE007234) (266 aa) fasta scores: E(): 1.2e-28, 34.81% id in 247 aa, and to Agrobacterium rhizogenes Riorf34 protein SWALL:Q9F5F8 (EMBL:AP002086) (266 aa) fasta scores: E(): 4.6e-32, 36.29% id in 248 aa; inner membrane component of binding-protein-dependent transport system complement(976565..977338) Bordetella parapertussis 12822 1665681 NP_883230.1 CDS BPP0905 NC_002928.3 977335 978201 R Similar to Agrobacterium tumefaciens AttA2 or Atu5127 SWALL:AAL45817 (EMBL:U59485) (300 aa) fasta scores: E(): 6.5e-28, 35.07% id in 268 aa, and to Rhizobium meliloti AttA2-like ABC transporter, permease Ra0515 or Sma0952 SWALL:Q92ZH0 (EMBL:AE007242) (296 aa) fasta scores: E(): 5.6e-28, 34.63% id in 257 aa; inner membrane component of binding-protein-dependent transport system complement(977335..978201) Bordetella parapertussis 12822 1665682 NP_883231.1 CDS BPP0906 NC_002928.3 978296 979357 R Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein Atu4421 or Agr_l_890 SWALL:AAL45215 (EMBL:AE009371) (340 aa) fasta scores: E(): 4.3e-16, 25.29% id in 344 aa, and to Rhizobium meliloti spermidineputrescine ABC transporter periplasmic solute-binding protein PotD or Rb0777 or Smb21273 SWALL:Q926H0 (EMBL:AL603644) (340 aa) fasta scores: E(): 3.8e-17, 26.26% id in 335 aa; extracellular solute-binding protein complement(978296..979357) Bordetella parapertussis 12822 1666814 NP_883232.1 CDS BPP0907 NC_002928.3 979633 980517 R Similar to Escherichia coli transcriptional activator protein LysR or B2839 SWALL:LYSR_ECOLI (SWALL:P03030) (311 aa) fasta scores: E(): 6.6e-37, 38.56% id in 293 aa, and to Salmonella typhimurium and Salmonella typhi positive transcriptional regulator LysR or Stm3014 or Sty3158 SWALL:Q8XGD5 (EMBL:AE008838) (311 aa) fasta scores: E(): 5.9e-35, 37.19% id in 285 aa; LysR family transcriptional regulator complement(979633..980517) Bordetella parapertussis 12822 1666815 NP_883233.1 CDS BPP0908 NC_002928.3 980747 981697 R transposase for IS1002 element; IS1002 transposase complement(980747..981697) Bordetella parapertussis 12822 1666816 NP_883234.1 CDS BPP0909 NC_002928.3 981784 982557 R Similar to Clostridium acetobutylicum 3-hydroxybutyryl-CoA dehydratase Crt or Cac2712 SWALL:CRT_CLOAB (SWALL:P52046) (261 aa) fasta scores: E(): 3.5e-17, 33.95% id in 215 aa, and to Caulobacter crescentus enoyl-CoA hydratase/isomerase Cc1723 SWALL:Q9A7K0 (EMBL:AE005846) (256 aa) fasta scores: E(): 3.2e-18, 36.93% id in 222 aa; enoyl-CoA hydratase complement(981784..982557) Bordetella parapertussis 12822 1666817 NP_883235.1 CDS BPP0910 NC_002928.3 982602 984221 R Similar to Streptomyces coelicolor long-chain-fatty-acid-CoA ligase Sco6196 or Sc2g5.17 SWALL:Q9Z5A6 (EMBL:AL035478) (541 aa) fasta scores: E(): 3.8e-39, 33.2% id in 521 aa, and to Mycobacterium tuberculosis hypothetical 59.7 kDa protein FadD35 or Rv2505c or Mtcy07a7.11c or Mt2580 SWALL:O06168 (EMBL:Z95556) (547 aa) fasta scores: E(): 1.4e-38, 30.92% id in 540 aa; long-chain-fatty-acid-CoA ligase complement(982602..984221) Bordetella parapertussis 12822 1666671 NP_883236.1 CDS BPP0911 NC_002928.3 984223 985206 R Similar to Alcaligenes eutrophus hypothetical 35.6 kDa protein in gbd 5'region precursor SWALL:YGB7_ALCEU (SWALL:Q44018) (327 aa) fasta scores: E(): 1.4e-62, 53.53% id in 325 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 5.8e-33, 38.06% id in 331 aa; hypothetical protein complement(984223..985206) Bordetella parapertussis 12822 1666672 NP_883237.1 CDS BPP0912 NC_002928.3 985362 986459 D Similar to Ralstonia solanacearum probable transmembrane two component system sensor kinase transcription regulator protein Rsc0191 or Rs00623 SWALL:Q8Y2Z0 (EMBL:AL646057) (458 aa) fasta scores: E(): 4.5e-17, 34.51% id in 368 aa, and to Bacillus halodurans two-component sensor histidine kinase involved in degradative enzyme DegS or Bh3629 SWALL:Q9K6U6 (EMBL:AP001519) (377 aa) fasta scores: E(): 1.1e-13, 27.09% id in 358 aa; two-component sensor histidine kinase 985362..986459 Bordetella parapertussis 12822 1666673 NP_883238.1 CDS BPP0913 NC_002928.3 986456 987244 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(986456..987244) Bordetella parapertussis 12822 1666674 NP_883239.1 CDS BPP0914 NC_002928.3 987264 988061 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(987264..988061) Bordetella parapertussis 12822 1666675 NP_883240.1 CDS BPP0915 NC_002928.3 988071 989948 R activates fatty acids by binding to coenzyme A; AMP-binding protein complement(988071..989948) Bordetella parapertussis 12822 1666676 NP_883241.1 CDS BPP0916 NC_002928.3 989975 991768 R Similar to Ralstonia solanacearum acyl-CoA dehydrogenase oxidoreductase Rsc0473 or Rs04422 SWALL:Q8Y263 (EMBL:AL646059) (595 aa) fasta scores: E(): 8.9e-121, 55.09% id in 579 aa, and to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase Pa0507 SWALL:Q9I611 (EMBL:AE004487) (598 aa) fasta scores: E(): 8.4e-102, 48.95% id in 574 aa; acyl-CoA dehydrogenase complement(989975..991768) Bordetella parapertussis 12822 1664588 NP_883242.1 CDS BPP0917 NC_002928.3 991886 993106 D Similar to Rhizobium loti hypothetical protein Mll1909 SWALL:Q98JK0 (EMBL:AP002998) (406 aa) fasta scores: E(): 1.4e-77, 61.38% id in 404 aa, and to Rhizobium meliloti hypothetical protein R00749 or Smc00804 SWALL:Q92KM5 (EMBL:AL591784) (407 aa) fasta scores: E(): 1.8e-72, 58.37% id in 406 aa; hypothetical protein 991886..993106 Bordetella parapertussis 12822 1664589 NP_883243.1 CDS BPP0918 NC_002928.3 993142 993780 D Similar to Rhizobium meliloti hypothetical protein R00750 or Smc00805 SWALL:Q92KM4 (EMBL:AL591784) (214 aa) fasta scores: E(): 1.1e-54, 68.09% id in 210 aa; hypothetical protein 993142..993780 Bordetella parapertussis 12822 1664590 NP_883244.1 CDS BPP0919 NC_002928.3 993800 994393 R Similar to Ralstonia solanacearum hypothetical protein Rsp1483 or Rs03060 SWALL:Q8XQ03 (EMBL:AL646085) (219 aa) fasta scores: E(): 1.4e-16, 50.9% id in 220 aa; hypothetical protein complement(993800..994393) Bordetella parapertussis 12822 1664591 NP_883245.1 CDS BPP0920 NC_002928.3 994386 995033 R Similar to Ralstonia solanacearum hypothetical transmembrane protein Rsp1482 or Rs03061 SWALL:Q8XQ04 (EMBL:AL646085) (215 aa) fasta scores: E(): 4.8e-60, 79.22% id in 207 aa; hypothetical protein complement(994386..995033) Bordetella parapertussis 12822 1664592 NP_883246.1 CDS BPP0921 NC_002928.3 995030 997630 R Similar to Ralstonia solanacearum probable transmembrane protein Rsp1481 or Rs03062 SWALL:Q8XQ05 (EMBL:AL646085) (698 aa) fasta scores: E(): 9.7e-75, 50.4% id in 863 aa; hypothetical protein complement(995030..997630) Bordetella parapertussis 12822 1664593 NP_883247.1 CDS BPP0922 NC_002928.3 997641 998375 R Similar to Ralstonia solanacearum hypothetical protein Rsp1480 or Rs03063 SWALL:Q8XQ06 (EMBL:AL646085) (246 aa) fasta scores: E(): 7.3e-45, 58.36% id in 245 aa; hypothetical protein complement(997641..998375) Bordetella parapertussis 12822 1664594 NP_883248.1 CDS BPP0923 NC_002928.3 998593 999222 D no significant database matches; hypothetical protein 998593..999222 Bordetella parapertussis 12822 1664595 NP_883249.1 CDS BPP0924 NC_002928.3 999411 999917 D Similar to Salmonella typhimurium and Salmonella typhi hypothetical 18.7 kDa protein YciF or Stm1729 or Sty1322 SWALL:Q9L435 (EMBL:AJ251362) (167 aa) fasta scores: E(): 2.5e-34, 67.06% id in 167 aa, and to Escherichia coli and Escherichia coli O157:H7 hypothetical 18.6 kDa protein YciF or Z2554 or Ecs1830 SWALL:Q933I0 (EMBL:U23497) (166 aa) fasta scores: E(): 1.8e-33, 67.28% id in 162 aa; hypothetical protein 999411..999917 Bordetella parapertussis 12822 1664596 NP_883250.1 CDS BPP0925 NC_002928.3 999924 1000502 R no significant database matches; hypothetical protein complement(999924..1000502) Bordetella parapertussis 12822 1665431 NP_883251.1 CDS BPP0926 NC_002928.3 1000561 1001640 R Similar to Escherichia coli calcium/proton antiporter ChaA or B1216 SWALL:CHAA_ECOLI (SWALL:P31801) (366 aa) fasta scores: E(): 1e-29, 28.88% id in 360 aa, and to Rhizobium leguminosarum CpaA protein SWALL:Q9XAT5 (EMBL:AJ006753) (333 aa) fasta scores: E(): 1.7e-77, 66.36% id in 333 aa; calcium/proton antiporter complement(1000561..1001640) Bordetella parapertussis 12822 1665432 NP_883252.1 CDS BPP0927 NC_002928.3 1001837 1002268 D Similar to Pseudomonas aeruginosa hypothetical protein Pa1354 SWALL:Q9I3Z0 (EMBL:AE004565) (141 aa) fasta scores: E(): 1.2e-35, 70.29% id in 138 aa, and to Agrobacterium tumefaciens hypothetical protein Atu0851 or Agr_c_1556 SWALL:AAL41865 (EMBL:AE009052) (140 aa) fasta scores: E(): 1.1e-29, 57.66% id in 137 aa; hypothetical protein 1001837..1002268 Bordetella parapertussis 12822 1665433 NP_883253.1 CDS BPP0928 NC_002928.3 1002327 1003073 D Similar to Brucella melitensis transcriptional regulator, GntR family Bmeii0116 SWALL:Q8YDQ9 (EMBL:AE009650) (244 aa) fasta scores: E(): 2.1e-58, 69.26% id in 244 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa2299 SWALL:Q9I1H6 (EMBL:AE004655) (249 aa) fasta scores: E(): 2.8e-26, 40.17% id in 234 aa; GntR family transcriptional regulator 1002327..1003073 Bordetella parapertussis 12822 1665434 NP_883254.1 CDS BPP0929 NC_002928.3 1003070 1003924 D Similar to Brucella melitensis hypothetical membrane spanning protein Bmeii0117 SWALL:Q8YDQ8 (EMBL:AE009650) (259 aa) fasta scores: E(): 1.1e-56, 65.11% id in 258 aa, and to Listeria innocua hypothetical protein Lin2503 SWALL:Q928M9 (EMBL:AL596172) (279 aa) fasta scores: E(): 2.1e-37, 43.63% id in 275 aa; hypothetical protein 1003070..1003924 Bordetella parapertussis 12822 1665435 NP_883255.1 CDS BPP0930 NC_002928.3 1003921 1004217 D Similar to Brucella melitensis hypothetical protein Bmeii0118 SWALL:Q8YDQ7 (EMBL:AE009650) (107 aa) fasta scores: E(): 2.9e-05, 41.23% id in 97 aa; hypothetical protein 1003921..1004217 Bordetella parapertussis 12822 1665436 NP_883256.1 CDS BPP0931 NC_002928.3 1004218 1004880 R Similar to Rhizobium meliloti GntR-family transcription regulator ra0084 or sma0160 SWALL:Q930W0 (EMBL:AE007202) (224 aa) fasta scores: E(): 3.2e-19, 33.48% id in 215 aa, and to Acinetobacter calcoaceticus transcriptional repressor MdcY SWALL:Q9F0Q8 (EMBL:AF209728) (224 aa) fasta scores: E(): 5.1e-22, 35.23% id in 210 aa; GntR family transcriptional regulator complement(1004218..1004880) Bordetella parapertussis 12822 1665437 NP_883257.1 CDS BPP0933 NC_002928.3 1005142 1006533 D Similar to Caulobacter crescentus pyrazinamidase/nicotinamidase Cc2613 SWALL:Q9A551 (EMBL:AE005929) (464 aa) fasta scores: E(): 6.2e-23, 36.15% id in 390 aa, and to Anabaena sp. glu-tRNA Alr1018 SWALL:Q8YY34 (EMBL:AP003584) (464 aa) fasta scores: E(): 9.3e-23, 32.87% id in 435 aa; amidase 1005142..1006533 Bordetella parapertussis 12822 1665438 NP_883258.1 CDS BPP0934 NC_002928.3 1006536 1007732 D Similar to Agrobacterium tumefaciens L-carnitine dehydratase CaiB or Atu2127 or Agr_c_3858 SWALL:AAL43117 (EMBL:AE009163) (397 aa) fasta scores: E(): 1.5e-46, 39.74% id in 390 aa, and to Thermoplasma volcanium L-carnitine dehydratase Tv1186 or Tvg1215416 SWALL:Q979H5 (EMBL:AP000995) (399 aa) fasta scores: E(): 2e-44, 34.28% id in 385 aa; hypothetical protein 1006536..1007732 Bordetella parapertussis 12822 1667406 NP_883259.1 CDS BPP0935 NC_002928.3 1007753 1008556 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1007753..1008556 Bordetella parapertussis 12822 1667407 NP_883260.1 CDS BPP0936 NC_002928.3 1008636 1009613 D Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein SsuA or Atu6059 or agr_pti_119 SWALL:AAL46295 (EMBL:AE009424) (320 aa) fasta scores: E(): 3.7e-10, 28.83% id in 267 aa, and to Rhizobium loti aliphatic sulfonate binding protein Mll4559 SWALL:Q98DT3 (EMBL:AP003004) (317 aa) fasta scores: E(): 5.3e-09, 27.07% id in 314 aa; hypothetical protein 1008636..1009613 Bordetella parapertussis 12822 1667408 NP_883261.1 CDS BPP0937 NC_002928.3 1009646 1010503 D Similar to Enterobacter cloacae ABC transporter permease SWALL:Q9ALV4 (EMBL:AF342826) (268 aa) fasta scores: E(): 3.8e-32, 41.83% id in 251 aa, and to Methanococcus jannaschii ABC transporter permease Mj0413 SWALL:Y413_METJA (SWALL:Q57856) (267 aa) fasta scores: E(): 4.8e-30, 39.14% id in 258 aa; inner membrane component of binding-protein-dependent transport system 1009646..1010503 Bordetella parapertussis 12822 1664583 NP_883262.1 CDS BPP0938 NC_002928.3 1010511 1011260 D Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter Pa2294 SWALL:Q9I1I1 (EMBL:AE004655) (284 aa) fasta scores: E(): 2.8e-39, 53.6% id in 250 aa, and to Streptomyces coelicolor ABC-transport protein, ATP-binding component Sco7545 or Sc8g12.21 SWALL:Q9KYY4 (EMBL:AL355753) (270 aa) fasta scores: E(): 1.2e-37, 49.4% id in 251 aa; ABC transporter ATP-binding protein 1010511..1011260 Bordetella parapertussis 12822 1664584 NP_883263.1 CDS BPP0939 NC_002928.3 1011282 1012154 D Similar to Caulobacter crescentus hypothetical protein Cc2605 SWALL:Q9A559 (EMBL:AE005928) (304 aa) fasta scores: E(): 1.3e-16, 27% id in 300 aa, and to Rhizobium meliloti enzyme, similar to uricase Rb0788 or Smb21284 SWALL:Q92VC0 (EMBL:AL603644) (471 aa) fasta scores: E(): 2.5e-16, 29.31% id in 307 aa; hypothetical protein 1011282..1012154 Bordetella parapertussis 12822 1667409 NP_883264.1 CDS BPP0940 NC_002928.3 1012183 1012962 D Similar to Ralstonia solanacearum probable dehydrogenase/reductase oxidoreductase Rsc2186 or Rs01413 SWALL:Q8XXC9 (EMBL:AL646068) (263 aa) fasta scores: E(): 2.2e-19, 37.74% id in 257 aa, and to Pseudomonas putida probable short-chain dehydrogenase TdnH SWALL:Q93JW4 (EMBL:D85415) (264 aa) fasta scores: E(): 3e-16, 31.39% id in 258 aa; short chain dehydrogenase 1012183..1012962 Bordetella parapertussis 12822 1667410 NP_883265.1 CDS BPP0941 NC_002928.3 1012996 1013793 R Similar to Pseudomonas putida regulatory protein TtgV SWALL:Q93PU6 (EMBL:AF299253) (259 aa) fasta scores: E(): 4e-11, 28.63% id in 220 aa, and to Rhizobium meliloti calcium binding transcriptional regulatory protein Ra0381 or Sma0717 SWALL:Q92ZR8 (EMBL:AE007229) (569 aa) fasta scores: E(): 3.3e-10, 27.54% id in 265 aa; transcriptional regulator complement(1012996..1013793) Bordetella parapertussis 12822 1667411 NP_883266.1 CDS BPP0942 NC_002928.3 1014045 1015259 D Similar to Pseudomonas aeruginosa leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor BraC or Pa1074 SWALL:BRAC_PSEAE (SWALL:P21175) (373 aa) fasta scores: E(): 1.9e-17, 28.61% id in 346 aa, and to Ralstonia solanacearum probable leu/ile/val-binding signal peptide protein Rsc2864 or Rs00241 SWALL:Q8XVG7 (EMBL:AL646072) (385 aa) fasta scores: E(): 1.4e-19, 28.68% id in 387 aa; branched-chain amino acid-binding protein 1014045..1015259 Bordetella parapertussis 12822 1667225 NP_883267.1 CDS BPP0943 NC_002928.3 1015256 1015735 D Similar to Archaeoglobus fulgidus maoc protein Af2313 SWALL:O27971 (EMBL:AE000944) (151 aa) fasta scores: E(): 6.5e-09, 34.55% id in 136 aa, and to Archaeoglobus fulgidus monoamine oxidase regulatory protein, Af1933 SWALL:O28346 (EMBL:AE000970) (161 aa) fasta scores: E(): 1.7e-08, 30.4% id in 148 aa; hypothetical protein 1015256..1015735 Bordetella parapertussis 12822 1667226 NP_883268.1 CDS BPP0944 NC_002928.3 1015752 1017383 D Similar to Bacillus subtilis acetyl-coenzyme A synthetase AcsA SWALL:ACSA_BACSU (SWALL:P39062) (572 aa) fasta scores: E(): 1.9e-59, 37.11% id in 547 aa, and to Rhizobium loti acetyl-CoA synthetase Mlr2005 SWALL:Q98JC6 (EMBL:AP002998) (559 aa) fasta scores: E(): 5.3e-68, 41.54% id in 544 aa; acetyl-CoA synthetase 1015752..1017383 Bordetella parapertussis 12822 1667227 NP_883269.1 CDS BPP0945 NC_002928.3 1017414 1017806 D Similar to Deinococcus radiodurans hypothetical protein Dr0033 SWALL:Q9RYB7 (EMBL:AE001867) (157 aa) fasta scores: E(): 8.1e-11, 43.33% id in 120 aa, and to Rhizobium meliloti hypothetical protein Ra1232 or Sma2289 SWALL:Q92XL2 (EMBL:AE007308) (130 aa) fasta scores: E(): 3.7e-10, 32% id in 125 aa; hypothetical protein 1017414..1017806 Bordetella parapertussis 12822 1667228 NP_883270.1 CDS BPP0946 NC_002928.3 1017806 1018666 D Similar to Ralstonia solanacearum probable amino-acid transmembrane lipoprotein ABC transporter Rsp0014 or Rs01986 SWALL:Q8XTU0 (EMBL:AL646076) (293 aa) fasta scores: E(): 1.4e-26, 36.67% id in 289 aa, and to Streptococcus pneumoniae R6 ABC transporter membrane-spanning permease-branched chain amino acid transport LivH SWALL:AAK99464 (EMBL:AE008443) (292 aa) fasta scores: E(): 7.1e-26, 34.02% id in 288 aa; branched chain amino acid ABC transporter permease 1017806..1018666 Bordetella parapertussis 12822 1667229 NP_883271.1 CDS BPP0947 NC_002928.3 1018670 1019632 D Similar to Deinococcus radiodurans branched-chain amino acid ABC transporter, permease Dr0282 SWALL:Q9RXM8 (EMBL:AE001889) (334 aa) fasta scores: E(): 1e-20, 33.21% id in 286 aa, and to Rhizobium loti ABC transporter, permease Mlr5222 SWALL:Q98CB4 (EMBL:AP003006) (346 aa) fasta scores: E(): 1.1e-20, 33.63% id in 327 aa; branched chain amino acid ABC transporter permease 1018670..1019632 Bordetella parapertussis 12822 1667230 NP_883272.1 CDS livG NC_002928.3 1019629 1020417 D Similar to Salmonella typhimurium and Salmonella typhi high-affinity branched-chain amino acid transport ATP-binding protein LivG or LivF or Stm3561 or Sty4251 SWALL:LIVG_SALTY (SWALL:P30293) (255 aa) fasta scores: E(): 3.3e-34, 45.66% id in 254 aa, and to Streptomyces coelicolor branched-chain amino acid transport ATP-binding protein Sco0709 or Scf42.19C SWALL:Q9L2J9 (EMBL:AL137165) (266 aa) fasta scores: E(): 6.5e-37, 49.22% id in 258 aa; high-affinity branched-chain amino acid transport ATP-binding protein 1019629..1020417 Bordetella parapertussis 12822 1667439 NP_883273.1 CDS livF NC_002928.3 1020410 1021099 D Similar to Salmonella typhimurium and Salmonella typhi high-affinity branched-chain amino acid transport ATP-binding protein LivF or LivG or Stm3560 or Sty4252 SWALL:LIVF_SALTY (SWALL:P30294) (237 aa) fasta scores: E(): 3.5e-28, 47.57% id in 227 aa, and to Thermotoga maritima branched chain amino acid ABC transporter, ATP-binding protein Tm1139 SWALL:Q9X0M3 (EMBL:AE001771) (239 aa) fasta scores: E(): 2.9e-34, 53.6% id in 222 aa; high-affinity branched-chain amino acid transport ATP-binding protein 1020410..1021099 Bordetella parapertussis 12822 1667440 NP_883274.1 CDS BPP0950 NC_002928.3 1021118 1022200 D ortholog of Bordetella pertussis (BX470248) BP2883; NADH:flavin oxidoreductase 1021118..1022200 Bordetella parapertussis 12822 1667441 NP_883275.1 CDS BPP0951 NC_002928.3 1022211 1023092 R ortholog of Bordetella pertussis (BX470248) BP2882; lysR family transcriptional regulator complement(1022211..1023092) Bordetella parapertussis 12822 1667442 NP_883276.1 CDS BPP0952 NC_002928.3 1023151 1023846 D ortholog of Bordetella pertussis (BX470248) BP2881; hypothetical protein 1023151..1023846 Bordetella parapertussis 12822 1668193 NP_883277.1 CDS BPP0953 NC_002928.3 1023836 1024345 D ortholog of Bordetella pertussis (BX470248) BP2880; hypothetical protein 1023836..1024345 Bordetella parapertussis 12822 1668194 NP_883278.1 CDS ribE NC_002928.3 1025620 1026321 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1025620..1026321) Bordetella parapertussis 12822 1668196 NP_883279.1 CDS BPP0956 NC_002928.3 1026586 1027623 D ortholog of Bordetella pertussis (BX470248) BP2873; hypothetical protein 1026586..1027623 Bordetella parapertussis 12822 1668349 NP_883280.1 CDS BPP0957 NC_002928.3 1027724 1028185 D ortholog of Bordetella pertussis (BX470248) BP2872; AsnC family transcriptional regulator 1027724..1028185 Bordetella parapertussis 12822 1668350 NP_883281.1 CDS BPP0958 NC_002928.3 1028201 1028749 R ortholog of Bordetella pertussis (BX470248) BP2871; hypothetical protein complement(1028201..1028749) Bordetella parapertussis 12822 1668351 NP_883282.1 CDS BPP0959 NC_002928.3 1028891 1030381 R ortholog of Bordetella pertussis (BX470248) BP2870; acid CoA ligase complement(1028891..1030381) Bordetella parapertussis 12822 1668352 NP_883283.1 CDS BPP0960 NC_002928.3 1030487 1031581 D ortholog of Bordetella pertussis (BX470248) BP2869; hypothetical protein 1030487..1031581 Bordetella parapertussis 12822 1664682 NP_883284.1 CDS BPP0961 NC_002928.3 1031585 1032367 R ortholog of Bordetella pertussis (BX470248) BP2868; ABC transport proteins, inner membrane component complement(1031585..1032367) Bordetella parapertussis 12822 1664683 NP_883285.1 CDS BPP0962 NC_002928.3 1032377 1033165 R ortholog of Bordetella pertussis (BX470248) BP2867; ABC transport proteins, ATP-binding component complement(1032377..1033165) Bordetella parapertussis 12822 1668353 NP_883286.1 CDS BPP0964 NC_002928.3 1034288 1034722 R ortholog of Bordetella pertussis (BX470248) BP2865; hypothetical protein complement(1034288..1034722) Bordetella parapertussis 12822 1668355 NP_883287.1 CDS BPP0966 NC_002928.3 1035781 1036707 R ortholog of Bordetella pertussis (BX470248) BP2863; hypothetical protein complement(1035781..1036707) Bordetella parapertussis 12822 1666200 NP_883288.1 CDS BPP0967 NC_002928.3 1036994 1037362 D ortholog of Bordetella pertussis (BX470248) BP2862; hypothetical protein 1036994..1037362 Bordetella parapertussis 12822 1666201 NP_883289.1 CDS BPP0968 NC_002928.3 1037525 1039957 D ortholog of Bordetella pertussis (BX470248) BP2860; cation-transporting ATPase 1037525..1039957 Bordetella parapertussis 12822 1666202 NP_883290.1 CDS BPP0969 NC_002928.3 1040006 1040698 D ortholog of Bordetella pertussis (BX470248) BP2859; hypothetical protein 1040006..1040698 Bordetella parapertussis 12822 1666464 NP_883291.1 CDS BPP0971 NC_002928.3 1042153 1042779 D Similar to Escherichia coli protein YcaC or B0897 SWALL:YCAC_ECOLI (SWALL:P21367) (208 aa) fasta scores: E(): 5.4e-69, 82.21% id in 208 aa, and to Escherichia coli O157:H7 hypothetical protein YcaC or Z1243 or Ecs0982 SWALL:Q8XEB8 (EMBL:AE005279) (208 aa) fasta scores: E(): 1.4e-69, 83.17% id in 208 aa; isochorismatase 1042153..1042779 Bordetella parapertussis 12822 1666466 NP_883292.1 CDS BPP0972 NC_002928.3 1042828 1044804 R Similar to Pseudomonas aeruginosa hypothetical protein Pa1433 SWALL:Q9I3R4 (EMBL:AE004573) (650 aa) fasta scores: E(): 2.8e-18, 28.85% id in 662 aa; hypothetical protein complement(1042828..1044804) Bordetella parapertussis 12822 1666467 NP_883293.1 CDS BPP0973 NC_002928.3 1044820 1045503 R Similar to Pseudomonas aeruginosa hypothetical protein Pa1434 SWALL:Q9I3R3 (EMBL:AE004573) (237 aa) fasta scores: E(): 5.2e-31, 46.05% id in 228 aa, and to Vibrio cholerae hypothetical protein Vca1081 SWALL:Q9KKM2 (EMBL:AE004433) (220 aa) fasta scores: E(): 1.3e-28, 44.28% id in 210 aa; hypothetical protein complement(1044820..1045503) Bordetella parapertussis 12822 1666468 NP_883294.1 CDS BPP0974 NC_002928.3 1045584 1052231 R Similar to Pseudomonas putida calcium-binding outer membrane-like protein SWALL:Q9L948 (EMBL:AF182518) (1800 aa) fasta scores: E(): 4.4e-26, 25.95% id in 1969 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1874 SWALL:Q9I2M3 (EMBL:AE004613) (2468 aa) fasta scores: E(): 4.7e-14, 22.23% id in 2447 aa; hemolysin complement(1045584..1052231) Bordetella parapertussis 12822 1666469 NP_883295.1 CDS BPP0975 NC_002928.3 1052466 1053131 R Similar to Streptomyces coelicolor two-component response regulator Sci41.37 SWALL:Q9RJ54 (EMBL:AL132648) (223 aa) fasta scores: E(): 6e-10, 32.53% id in 209 aa, and to Deinococcus radiodurans DNA-binding response regulator Dr0987 SWALL:Q9RVP0 (EMBL:AE001951) (239 aa) fasta scores: E(): 3.8e-09, 30.94% id in 223 aa; LuxR family transcriptional regulator complement(1052466..1053131) Bordetella parapertussis 12822 1668969 NP_883296.1 CDS BPP0976 NC_002928.3 1053153 1054595 R Similar to Vibrio cholerae secretion protein HlyD family Vca1080 SWALL:Q9KKM3 (EMBL:AE004433) (481 aa) fasta scores: E(): 1.3e-42, 42.31% id in 449 aa, and to Xylella fastidiosa hemolysin secretion protein D Xf2398 SWALL:Q9PAU7 (EMBL:AE004049) (473 aa) fasta scores: E(): 6.1e-29, 31.16% id in 430 aa; HlyD family secretion protein complement(1053153..1054595) Bordetella parapertussis 12822 1668970 NP_883297.1 CDS BPP0977 NC_002928.3 1054598 1056772 R Similar to Vibrio cholerae toxin secretion ATP-binding protein Vca1084 SWALL:Q9KKL9 (EMBL:AE004433) (704 aa) fasta scores: E(): 4e-108, 43.59% id in 702 aa, and to Pseudomonas aeruginosa probable ATP-binding/permease fusion ABC transporter Pa1876 SWALL:Q9I2M1 (EMBL:AE004613) (723 aa) fasta scores: E(): 1.3e-80, 37.48% id in 691 aa; ABC transporter complement(1054598..1056772) Bordetella parapertussis 12822 1668971 NP_883298.1 CDS BPP0978 NC_002928.3 1056750 1056965 R no significant database matches; hypothetical protein complement(1056750..1056965) Bordetella parapertussis 12822 1666152 NP_883299.1 CDS BPP0979 NC_002928.3 1056976 1058445 R Similar to Pseudomonas putida agglutination protein precursor AggA SWALL:Q52018 (EMBL:M64540) (452 aa) fasta scores: E(): 6e-35, 31.4% id in 449 aa, and to Vibrio cholerae agglutination protein Vc1621 SWALL:Q9KRL6 (EMBL:AE004240) (445 aa) fasta scores: E(): 6.8e-35, 31.6% id in 424 aa; outer membrane protein complement(1056976..1058445) Bordetella parapertussis 12822 1666153 NP_883300.1 CDS BPP0980 NC_002928.3 1058797 1059987 R Similar to Pseudomonas aeruginosa hypothetical protein Pa3949 SWALL:Q9HX67 (EMBL:AE004813) (391 aa) fasta scores: E(): 1.1e-87, 62.18% id in 394 aa, and to Ralstonia solanacearum transmembrane protein Rsc3158 or Rs00440 SWALL:Q8XUM9 (EMBL:AL646074) (425 aa) fasta scores: E(): 6e-96, 65.16% id in 399 aa; hypothetical protein complement(1058797..1059987) Bordetella parapertussis 12822 1665916 NP_883301.1 CDS arsR NC_002928.3 1060242 1060568 D Similar to Ralstonia solanacearum arsenical resistance operon repressor transcription regulator protein ArsR or Rsp1129 or Rs05489 SWALL:Q8XQT9 (EMBL:AL646083) (107 aa) fasta scores: E(): 3.3e-14, 46.66% id in 105 aa, and to Caulobacter crescentus transcriptional regulator, ArsR family Cc1505 SWALL:Q9A859 (EMBL:AE005825) (109 aa) fasta scores: E(): 3.8e-14, 52.17% id in 92 aa; transcription regulator ArsR 1060242..1060568 Bordetella parapertussis 12822 1665917 NP_883302.1 CDS arsB NC_002928.3 1060565 1061845 D Similar to Escherichia coli, and Escherichia coli O157:H7 arsenical pump membrane protein ArsB or ArsF or B3502 or Z4904 or Ecs4374 SWALL:ARSB_ECOLI (SWALL:P37310) (429 aa) fasta scores: E(): 3e-115, 72.06% id in 426 aa, and to Serratia marcescens ArsB transmembrane efflux channel ArsB SWALL:Q9L336 (EMBL:AJ288983) (429 aa) fasta scores: E(): 5.5e-118, 74.41% id in 426 aa; arsenical pump membrane protein 1060565..1061845 Bordetella parapertussis 12822 1665918 NP_883303.1 CDS BPP0983 NC_002928.3 1061886 1062851 R Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 3.3e-27, 33.02% id in 321 aa, and to Comamonas testosteroni Orf4 protein SWALL:Q9S155 (EMBL:AB024335) (325 aa) fasta scores: E(): 2.4e-33, 34.82% id in 313 aa; hypothetical protein complement(1061886..1062851) Bordetella parapertussis 12822 1666154 NP_883304.1 CDS BPP0984 NC_002928.3 1062895 1064031 R Similar to Pseudomonas aeruginosa hypothetical protein Pa3592 SWALL:Q9HY34 (EMBL:AE004779) (395 aa) fasta scores: E(): 1.5e-75, 55.46% id in 366 aa, and to Rhizobium meliloti conserved membrane-anchored protein Rb0848 or Smb21182 SWALL:Q92V66 (EMBL:AL603645) (394 aa) fasta scores: E(): 3.7e-53, 44.03% id in 377 aa; hypothetical protein complement(1062895..1064031) Bordetella parapertussis 12822 1666155 NP_883305.1 CDS BPP0985 NC_002928.3 1064061 1065116 R no significant database matches; hypothetical protein complement(1064061..1065116) Bordetella parapertussis 12822 1666156 NP_883306.1 CDS BPP0986 NC_002928.3 1065131 1065745 R Similar to Deinococcus radiodurans transcriptional regulator, TetR family Dr2376 SWALL:Q9RRV9 (EMBL:AE002068) (197 aa) fasta scores: E(): 2e-07, 27.41% id in 197 aa, and to Mycobacterium tuberculosis hypothetical 24.1 kDa protein Rv0158 or Mtv032.01 or Mt0167 SWALL:O53641 (EMBL:AL021927) (214 aa) fasta scores: E(): 2.1e-06, 29.44% id in 180 aa; TetR family transcriptional regulator complement(1065131..1065745) Bordetella parapertussis 12822 1666157 NP_883307.1 CDS BPP0987 NC_002928.3 1065781 1066914 R Similar to Homo sapiens acyl-coenzyme A dehydrogenase, C-2 to C-3 short chain SWALL:AAH25963 (EMBL:BC025963) (412 aa) fasta scores: E(): 3.2e-35, 40.33% id in 362 aa, and to Mycobacterium leprae probable acyl-CoA dehydrogenase Fade25 or Acd or Ml0737 or B1308_f1_34 SWALL:ACDP_MYCLE (SWALL:P46703) (389 aa) fasta scores: E(): 2e-35, 40.75% id in 373 aa; acyl-CoA dehydrogenase complement(1065781..1066914) Bordetella parapertussis 12822 1668177 NP_883308.1 CDS BPP0988 NC_002928.3 1067129 1067866 D Similar to Pseudomonas aeruginosa probable short-chain dehydrogenase Pa0182 SWALL:Q9I6V0 (EMBL:AE004456) (250 aa) fasta scores: E(): 2.4e-42, 59.33% id in 241 aa, and to Rhizobium meliloti dehydrogenasereductase Rb0438 or Smb20456 SWALL:Q92WA6 (EMBL:AL603643) (248 aa) fasta scores: E(): 9.5e-41, 52.65% id in 245 aa; short-chain dehydrogenase 1067129..1067866 Bordetella parapertussis 12822 1668178 NP_883309.1 CDS sugE NC_002928.3 1067869 1068204 D Similar to Escherichia coli SugE protein or B4148 SWALL:SUGE_ECOLI (SWALL:P30743) (105 aa) fasta scores: E(): 3.2e-15, 48.51% id in 101 aa, and to Citrobacter freundii SugE protein homolog SWALL:SUGE_CITFR (SWALL:O69279) (105 aa) fasta scores: E(): 6.6e-16, 52.47% id in 101 aa; chaperone 1067869..1068204 Bordetella parapertussis 12822 1668179 NP_883310.1 CDS BPP0990 NC_002928.3 1068201 1068743 D Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa2931 SWALL:Q9HZR6 (EMBL:AE004719) (196 aa) fasta scores: E(): 4.1e-21, 47.36% id in 152 aa, and to Streptomyces coelicolor transcriptional regulator Scd95a.36C SWALL:Q9KXT8 (EMBL:AL357432) (202 aa) fasta scores: E(): 1e-19, 43.87% id in 155 aa; TetR family transcriptional regulator 1068201..1068743 Bordetella parapertussis 12822 1668180 NP_883311.1 CDS BPP0991 NC_002928.3 1068816 1069577 R no significant database matches; hypothetical protein complement(1068816..1069577) Bordetella parapertussis 12822 1668181 NP_883312.1 CDS BPP0992 NC_002928.3 1069574 1070101 R no significant database matches; hypothetical protein complement(1069574..1070101) Bordetella parapertussis 12822 1668182 NP_883313.1 CDS BPP0993 NC_002928.3 1070162 1070335 D no significant database matches; hypothetical protein 1070162..1070335 Bordetella parapertussis 12822 1665754 NP_883314.1 CDS BPP0994 NC_002928.3 1070425 1071219 D Similar to unidentified bacterium polypeptide SWALL:Q52339 (EMBL:Z11878) (154 aa) fasta scores: E(): 3.4e-33, 59.33% id in 150 aa; plasmid-like protein 1070425..1071219 Bordetella parapertussis 12822 1665755 NP_883315.1 CDS BPP0995 NC_002928.3 1071376 1072872 D Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or Ched or B4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 1.1e-34, 41.69% id in 355 aa, and to Ralstonia solanacearum probable methyl-accepting chemotaxis transducer transmembrane protein Rsc1460 or rs03847 SWALL:Q8XZE1 (EMBL:AL646064) (513 aa) fasta scores: E(): 2.1e-35, 43.07% id in 325 aa; methyl-accepting chemotaxis protein 1071376..1072872 Bordetella parapertussis 12822 1665756 NP_883316.1 CDS BPP0996 NC_002928.3 1073082 1073999 R Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa4174 SWALL:Q9HWK7 (EMBL:AE004834) (307 aa) fasta scores: E(): 2.8e-42, 39.66% id in 295 aa, and to Rhizobium meliloti transcription regulator protein R00429 or Smc01092 SWALL:Q92SG7 (EMBL:AL591783) (296 aa) fasta scores: E(): 2.2e-40, 39.23% id in 288 aa; LysR family transcriptional regulator complement(1073082..1073999) Bordetella parapertussis 12822 1665757 NP_883317.1 CDS BPP0997 NC_002928.3 1074108 1074551 D Similar to Agrobacterium tumefaciens hypothetical protein Atu4302 or Agr_l_1124 SWALL:Q8U7Z7 (EMBL:AE009358) (137 aa) fasta scores: E(): 1.6e-21, 57.36% id in 129 aa, and to Rhizobium loti hypothetical protein Mlr0979 SWALL:Q98LL3 (EMBL:AP002996) (138 aa) fasta scores: E(): 2.2e-21, 51.88% id in 133 aa; hypothetical protein 1074108..1074551 Bordetella parapertussis 12822 1665758 NP_883318.1 CDS BPP0998 NC_002928.3 1074548 1074997 D Similar to Rhizobium meliloti hypothetical protein R00543 or Smc02239 SWALL:Q92S80 (EMBL:AL591784) (153 aa) fasta scores: E(): 5.7e-23, 44.13% id in 145 aa, and to Escherichia coli O157:H7 hypothetical protein Z3974 or Ecs3535 SWALL:Q8X921 (EMBL:AE005496) (143 aa) fasta scores: E(): 1.6e-20, 48.22% id in 141 aa; hypothetical protein 1074548..1074997 Bordetella parapertussis 12822 1665759 NP_883319.1 CDS BPP0999 NC_002928.3 1074999 1076432 R Similar to Pseudomonas aeruginosa hypothetical protein Pa5136 SWALL:Q9HU48 (EMBL:AE004926) (493 aa) fasta scores: E(): 1.9e-27, 30.28% id in 492 aa; hypothetical protein complement(1074999..1076432) Bordetella parapertussis 12822 1665760 NP_883320.1 CDS BPP1000 NC_002928.3 1076528 1076956 D Similar to Pyrobaculum aerophilum hypothetical protein Pae2513 SWALL:Q8ZV09 (EMBL:AE009881) (151 aa) fasta scores: E(): 6.3, 30.58% id in 85 aa; hypothetical protein 1076528..1076956 Bordetella parapertussis 12822 1666305 NP_883321.1 CDS BPP1001 NC_002928.3 1077131 1078108 D Similar to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 5.1e-43, 39.75% id in 322 aa; hypothetical protein 1077131..1078108 Bordetella parapertussis 12822 1666306 NP_883322.1 CDS BPP1002 NC_002928.3 1078110 1079768 D Similar to Escherichia coli acetolactate synthase isozyme I large subunit IlvB or B3671 SWALL:ILVB_ECOLI (SWALL:P08142) (562 aa) fasta scores: E(): 6.4e-26, 26.34% id in 558 aa, and to Pseudomonas aeruginosa probable decarboxylase Pa3506 SWALL:Q9HYA3 (EMBL:AE004771) (560 aa) fasta scores: E(): 3.9e-79, 45.22% id in 555 aa; hypothetical protein 1078110..1079768 Bordetella parapertussis 12822 1666307 NP_883323.1 CDS BPP1003 NC_002928.3 1079784 1081211 D Similar to Rhizobium loti aldehyde dehydrogenase Mlr5236 SWALL:Q98CA3 (EMBL:AP003006) (479 aa) fasta scores: E(): 7.1e-91, 50.73% id in 475 aa; aldehyde dehydrogenase 1079784..1081211 Bordetella parapertussis 12822 1666308 NP_883324.1 CDS BPP1004 NC_002928.3 1081253 1082452 D Similar to Ralstonia solanacearum transmembrane protein Rsc0796 or Rs05041 SWALL:Q8Y194 (EMBL:AL646061) (420 aa) fasta scores: E(): 2.9e-77, 54.54% id in 385 aa, and to Rhizobium meliloti conserved membrane-anchored protein Rb0848 or Smb21182 SWALL:Q92V66 (EMBL:AL603645) (394 aa) fasta scores: E(): 1.5e-75, 53.35% id in 388 aa; hypothetical protein 1081253..1082452 Bordetella parapertussis 12822 1666309 NP_883325.1 CDS BPP1005 NC_002928.3 1082469 1083260 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1082469..1083260 Bordetella parapertussis 12822 1666310 NP_883326.1 CDS BPP1006 NC_002928.3 1083269 1084186 R Similar to Ralstonia solanacearum probable transcription regulator protein Rsp1267 or Rs05312 SWALL:Q8XQG0 (EMBL:AL646083) (294 aa) fasta scores: E(): 1.5e-30, 35.15% id in 293 aa; LysR family transcriptional regulator complement(1083269..1084186) Bordetella parapertussis 12822 1665421 NP_883327.1 CDS BPP1007 NC_002928.3 1084252 1085955 D No significant similarity over the entire length of this CDS. Its C-terminal region is similar to parts of many hypothetical proteins.; hypothetical protein 1084252..1085955 Bordetella parapertussis 12822 1665422 NP_883328.1 CDS BPP1008 NC_002928.3 1086008 1086286 R no significant database matches; hypothetical protein complement(1086008..1086286) Bordetella parapertussis 12822 1665050 NP_883329.1 CDS BPP1009 NC_002928.3 1086663 1086914 D no significant database matches; hypothetical protein 1086663..1086914 Bordetella parapertussis 12822 1665051 NP_883330.1 CDS aadA4 NC_002928.3 1086980 1087771 D streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 1086980..1087771 Bordetella parapertussis 12822 1665052 NP_883331.1 CDS BPP1011 NC_002928.3 1087777 1089222 R Similar to Streptomyces coelicolor amidase Scbac17f8.16 SWALL:Q93J72 (EMBL:AL596030) (467 aa) fasta scores: E(): 4.9e-64, 44.77% id in 469 aa, and to Rhizobium loti Glu-tRNA amidotransferase, subunit A Mlr6081 SWALL:Q98AB0 (EMBL:AP003008) (478 aa) fasta scores: E(): 1.6e-63, 43.42% id in 456 aa; amidase complement(1087777..1089222) Bordetella parapertussis 12822 1665053 NP_883332.1 CDS BPP1012 NC_002928.3 1089228 1090514 R Similar to Bacillus halodurans C4-dicarboxylate transport system Bh2671 SWALL:Q9K9H6 (EMBL:AP001516) (426 aa) fasta scores: E(): 5.2e-59, 42.31% id in 423 aa, and to Pasteurella multocida hypothetical protein Pm0273 SWALL:Q9CNZ7 (EMBL:AE006062) (427 aa) fasta scores: E(): 8.5e-56, 39.9% id in 421 aa; hypothetical protein complement(1089228..1090514) Bordetella parapertussis 12822 1665054 NP_883333.1 CDS BPP1013 NC_002928.3 1090515 1091018 R Similar to Salmonella typhi possible membrane transport protein Sty3819 SWALL:Q8Z2V8 (EMBL:AL627279) (171 aa) fasta scores: E(): 2.5e-09, 33.57% id in 140 aa, and to Bacillus halodurans C4-dicarboxylate transport system Bh0702 SWALL:Q9KEZ7 (EMBL:AP001509) (177 aa) fasta scores: E(): 3.5e-09, 31.15% id in 138 aa; hypothetical protein complement(1090515..1091018) Bordetella parapertussis 12822 1665055 NP_883334.1 CDS BPP1014 NC_002928.3 1091050 1091916 R Similar to Escherichia coli ABC transporter periplasmic binding protein yiao precursor yiao or b3579 SWALL:YIAO_ECOLI (SWALL:P37676) (328 aa) fasta scores: E(): 1.8e-27, 32.82% id in 262 aa, and to Agrobacterium tumefaciens Agr_l_3344p agr_l_3344 SWALL:AAK90249 (EMBL:AE008369) (282 aa) fasta scores: E(): 6.7e-27, 32.61% id in 279 aa; extracellular solute-binding protein complement(1091050..1091916) Bordetella parapertussis 12822 1665056 NP_883335.1 CDS BPP1015 NC_002928.3 1092103 1092723 R Similar to Pseudomonas putida 2-hydroxychromene-2-carboxylate isomerase NahD SWALL:NAHD_PSEPU (SWALL:Q51948) (203 aa) fasta scores: E(): 2.4e-11, 29% id in 200 aa, and to Agrobacterium tumefaciens StrC58 2-hydroxychromene-2-carboxylate isomerase nahD SWALL:AAL46112 (EMBL:AE008963) (197 aa) fasta scores: E(): 1.3e-24, 36.26% id in 193 aa; 2-hydroxychromene-2-carboxylate isomerase complement(1092103..1092723) Bordetella parapertussis 12822 1668154 NP_883336.1 CDS BPP1016 NC_002928.3 1092774 1093193 R Similar to Streptomyces peucetius methylaklanonic acid cyclase DnrD SWALL:Q54808 (EMBL:L40425) (145 aa) fasta scores: E(): 0.024, 25.18% id in 135 aa, and to Streptomyces sp DauD protein dauD SWALL:Q55215 (EMBL:L35154) (161 aa) fasta scores: E(): 0.03, 25.18% id in 135 aa; cyclase complement(1092774..1093193) Bordetella parapertussis 12822 1668155 NP_883337.1 CDS BPP1017 NC_002928.3 1093426 1093953 R Similar to Haemophilus influenzae hypothetical protein Hi0243 SWALL:Y243_HAEIN (SWALL:P43971) (172 aa) fasta scores: E(): 5.2e-09, 27.21% id in 169 aa, and to Neisseria meningitidis hypothetical protein Nma1732 SWALL:Q9JTK9 (EMBL:AL162757) (169 aa) fasta scores: E(): 6.9e-09, 28.9% id in 173 aa; hypothetical protein complement(1093426..1093953) Bordetella parapertussis 12822 1668156 NP_883338.1 CDS BPP1018 NC_002928.3 1093991 1094281 R Similar to Ralstonia solanacearum hypothetical protein Rsc2571 or Rs00770 SWALL:Q8XWA3 (EMBL:AL646070) (89 aa) fasta scores: E(): 9.2e-23, 69.31% id in 88 aa; hypothetical protein complement(1093991..1094281) Bordetella parapertussis 12822 1668157 NP_883339.1 CDS BPP1019 NC_002928.3 1094278 1094913 R Similar to Ralstonia solanacearum hypothetical protein Rsc2567 or Rs00763 SWALL:Q8XWA7 (EMBL:AL646070) (250 aa) fasta scores: E(): 3.3e-13, 38.43% id in 242 aa, and to Caulobacter crescentus hypothetical protein Cc0708 SWALL:Q9AA98 (EMBL:AE005746) (234 aa) fasta scores: E(): 3.8e-11, 36.48% id in 222 aa; hypothetical protein complement(1094278..1094913) Bordetella parapertussis 12822 1668158 NP_883340.1 CDS ada NC_002928.3 1094910 1095986 R Similar to Escherichia coli Ada regulatory protein Ada or B2213 SWALL:ADA_ECOLI (SWALL:P06134) (354 aa) fasta scores: E(): 1e-68, 55.23% id in 344 aa, and to Pseudomonas aeruginosa O6-methylguanine-DNA methyltransferase Ada or Pa2118 SWALL:Q9I1Z7 (EMBL:AE004639) (358 aa) fasta scores: E(): 1.6e-103, 77.36% id in 349 aa; O6-methylguanine-DNA methyltransferase complement(1094910..1095986) Bordetella parapertussis 12822 1668159 NP_883341.1 CDS BPP1021 NC_002928.3 1096045 1096704 R Similar to Schizosaccharomyces pombe DNA-3-methyladenine glycosylase 1 Mag1 or Spapb24d3.04C SWALL:MAG1_SCHPO (SWALL:Q92383) (228 aa) fasta scores: E(): 1.6e-30, 44.16% id in 197 aa, and to Ralstonia solanacearum probable DNA-3-methyladenine glycosylase AlkA or Rsc2569 or Rs00766 SWALL:Q8XWA5 (EMBL:AL646070) (212 aa) fasta scores: E(): 2.2e-53, 69.08% id in 207 aa; DNA-3-methyladenine glycosylase 1 complement(1096045..1096704) Bordetella parapertussis 12822 1668160 NP_883342.1 CDS BPP1022 NC_002928.3 1096761 1097264 R Similar to Ralstonia solanacearum hypothetical protein Rsc0107 or Rs00977 SWALL:Q8Y374 (EMBL:AL646057) (159 aa) fasta scores: E(): 3.4e-26, 50% id in 142 aa, and to Mycobacterium tuberculosis hypothetical protein Rv0887c or Mt0910 or Mtcy31.15C SWALL:Y887_MYCTU (SWALL:Q10548) (170 aa) fasta scores: E(): 2.8e-21, 47.02% id in 151 aa; glyxalase complement(1096761..1097264) Bordetella parapertussis 12822 1668161 NP_883343.1 CDS BPP1023 NC_002928.3 1097432 1098580 R Similar to Campylobacter jejuni hypothetical protein Cj0846 SWALL:Y846_CAMJE (SWALL:Q9PP77) (374 aa) fasta scores: E(): 4.6e-19, 29.65% id in 381 aa, and to Streptomyces coelicolor integral membrane protein Sc5g8.17 SWALL:Q9KZ97 (EMBL:AL353872) (436 aa) fasta scores: E(): 1.4e-34, 44.05% id in 286 aa; phosphoesterase complement(1097432..1098580) Bordetella parapertussis 12822 1664976 NP_883344.1 CDS cioA NC_002928.3 1098870 1100258 D Similar to Pseudomonas aeruginosa cyanide insensitive terminal oxidase CioA or Pa3930 SWALL:O07440 (EMBL:Y10528) (488 aa) fasta scores: E(): 6.4e-124, 67.94% id in 468 aa, and to Rhodobacter sphaeroides quinol oxidase subunit I QxtA SWALL:O86080 (EMBL:AF084032) (465 aa) fasta scores: E(): 5e-101, 56.8% id in 463 aa; cytochrome oxidase subunit I 1098870..1100258 Bordetella parapertussis 12822 1664977 NP_883345.1 CDS cioB NC_002928.3 1100260 1101267 D Similar to Pseudomonas aeruginosa cyanide insensitive terminal oxidase CioB or Pa3929 SWALL:O07441 (EMBL:Y10528) (335 aa) fasta scores: E(): 7.9e-92, 68.06% id in 335 aa, and to Rhodobacter sphaeroides quinol oxidase subunit II QxtB SWALL:O86081 (EMBL:AF084032) (335 aa) fasta scores: E(): 1.7e-65, 54.03% id in 335 aa; cytochrome oxidase subunit II 1100260..1101267 Bordetella parapertussis 12822 1664978 NP_883346.1 CDS BPP1025A NC_002928.3 1101278 1101424 D Similar to Pseudomonas aeruginosa hypothetical protein Pa3928 SWALL:Q9HX86 (EMBL:AE004810) (56 aa) fasta scores: E(): 0.04, 44.18% id in 43 aa; hypothetical protein 1101278..1101424 Bordetella parapertussis 12822 1664979 NP_883347.1 CDS BPP1026 NC_002928.3 1101441 1102862 D Similar to Pseudomonas aeruginosa hypothetical protein Pa4132 SWALL:Q9HWP9 (EMBL:AE004829) (471 aa) fasta scores: E(): 1.8e-105, 58.08% id in 470 aa, and to Salmonella typhimurium regulatory protein, GntR family YdcR or Stm1598 SWALL:Q8ZPC8 (EMBL:AE008770) (474 aa) fasta scores: E(): 6.7e-76, 47.1% id in 467 aa; aminotransferase 1101441..1102862 Bordetella parapertussis 12822 1664980 NP_883348.1 CDS BPP1027 NC_002928.3 1103014 1103346 D no significant database matches; hypothetical protein 1103014..1103346 Bordetella parapertussis 12822 1664981 NP_883349.1 CDS ttrA NC_002928.3 1103357 1106518 R Similar to Salmonella typhimurium tetrathionate reductase subunit A TtrA or Stm1383 SWALL:Q9Z4S6 (EMBL:AJ224978) (1020 aa) fasta scores: E(): 5.4e-115, 50.14% id in 1041 aa, and to Pasteurella multocida TtrA or Pm0721 SWALL:Q9CMT7 (EMBL:AE006109) (1029 aa) fasta scores: E(): 5e-179, 46.82% id in 1038 aa; tetrathionate reductase subunit A complement(1103357..1106518) Bordetella parapertussis 12822 1667161 NP_883350.1 CDS ttrC NC_002928.3 1106545 1107546 R Similar to Salmonella typhimurium tetrathionate reductase subunit C TtrC or Stm1384 SWALL:Q9Z4S7 (EMBL:AJ224978) (340 aa) fasta scores: E(): 8.4e-26, 35.07% id in 345 aa, and to Pasteurella multocida TtrC or Pm0722 SWALL:Q9CMT6 (EMBL:AE006109) (349 aa) fasta scores: E(): 2.4e-09, 32.02% id in 356 aa; tetrathionate reductase subunit C complement(1106545..1107546) Bordetella parapertussis 12822 1667162 NP_883351.1 CDS ttrB NC_002928.3 1107560 1108333 R Similar to Salmonella typhimurium tetrathionate reductase subunit B TtrB or Stm1385 or Sty1736 SWALL:Q9Z4S8 (EMBL:AJ224978) (250 aa) fasta scores: E(): 4.7e-60, 66.52% id in 236 aa, and to Pasteurella multocida TtrB or Pm0723 SWALL:Q9CMT5 (EMBL:AE006109) (245 aa) fasta scores: E(): 5.3e-60, 66.94% id in 236 aa; tetrathionate reductase subunit B complement(1107560..1108333) Bordetella parapertussis 12822 1667163 NP_883352.1 CDS BPP1031 NC_002928.3 1108649 1109002 D Similar to Rhizobium meliloti hypothetical signal peptide protein R02090 or Smc01489 SWALL:Q92K52 (EMBL:AL591789) (117 aa) fasta scores: E(): 2.5e-11, 40.86% id in 115 aa; hypothetical protein 1108649..1109002 Bordetella parapertussis 12822 1667164 NP_883353.1 CDS BPP1032 NC_002928.3 1109025 1109951 R Similar to Rhizobium meliloti hypothetical protein R02995 or Smc03098 SWALL:Q92LP0 (EMBL:AL591792) (291 aa) fasta scores: E(): 2e-80, 66.44% id in 295 aa, and to Saccharomyces cerevisiae hypothetical 32.8 kDa protein in bio3-hxt17 intergenic region Ynr064c or N3535 SWALL:YN93_YEAST (SWALL:P53750) (290 aa) fasta scores: E(): 2.6e-31, 32.36% id in 275 aa; hydrolase complement(1109025..1109951) Bordetella parapertussis 12822 1665568 NP_883354.1 CDS lon NC_002928.3 1110248 1112599 R Similar to Azospirillum brasilense ATP-dependent protease La Lon SWALL:LON_AZOBR (SWALL:P77810) (810 aa) fasta scores: E(): 1.4e-110, 46.64% id in 776 aa, and to Myxococcus xanthus ATP-dependent protease La 2 LonD or BsgA SWALL:LON2_MYXXA (SWALL:P36774) (826 aa) fasta scores: E(): 2.4e-127, 51.61% id in 775 aa; ATP-dependent protease La complement(1110248..1112599) Bordetella parapertussis 12822 1665569 NP_883355.1 CDS BPP1034 NC_002928.3 1112596 1113003 R Similar to Synechococcus vulcanus heat shock protein HspA SWALL:O82825 (EMBL:AB002666) (145 aa) fasta scores: E(): 0.0011, 30.95% id in 126 aa, and to Thermotoga maritima heat shock protein, class I Tm0374 SWALL:Q9WYK7 (EMBL:AE001717) (147 aa) fasta scores: E(): 0.00051, 30.57% id in 121 aa; heat shock protein complement(1112596..1113003) Bordetella parapertussis 12822 1666376 NP_883356.1 CDS BPP1035 NC_002928.3 1113317 1113553 R Partial CDS. Truncated relaive to its B. bronchiseptica orthologue. Similar to the N-terminal region of Ralstonia solanacearum hypothetical signal peptide protein rsc2895 or Rs00203 SWALL:Q8XVD6 (EMBL:AL646072) (106 aa) fasta scores: E(): 6.4, 38.09% id in 63 aa; exported protein (partial) complement(1113317..1113553) Bordetella parapertussis 12822 1666377 NP_883357.1 CDS BPP1036 NC_002928.3 1113684 1114574 D Similar to Ralstonia solanacearum probable transcription regulator protein Rsp1267 or Rs05312 SWALL:Q8XQG0 (EMBL:AL646083) (294 aa) fasta scores: E(): 8.4e-64, 58.98% id in 295 aa, and to Brucella melitensis transcriptional regulatory protein, LysR family Bmeii1077 SWALL:Q8YB24 (EMBL:AE009740) (294 aa) fasta scores: E(): 3.6e-50, 50.69% id in 290 aa; LysR family transcriptional regulator 1113684..1114574 Bordetella parapertussis 12822 1666378 NP_883358.1 CDS BPP1037 NC_002928.3 1114591 1115061 R Similar to Ralstonia solanacearum hypothetical protein Rsp0729 or Rs01699 SWALL:Q8XRV2 (EMBL:AL646080) (172 aa) fasta scores: E(): 6.2e-30, 60.43% id in 139 aa, and to Synechocystis sp hypothetical protein Sll1188 SWALL:P72845 (EMBL:D90901) (164 aa) fasta scores: E(): 2e-18, 45.86% id in 133 aa; hypothetical protein complement(1114591..1115061) Bordetella parapertussis 12822 1666379 NP_883359.1 CDS add NC_002928.3 1115160 1116113 D catalyzes the formation of inosine from adenosine; adenosine deaminase 1115160..1116113 Bordetella parapertussis 12822 1666380 NP_883360.1 CDS BPP1039 NC_002928.3 1116130 1117092 R Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 4.4e-34, 37.5% id in 312 aa, and to Agrobacterium tumefaciens StrC58 conserved hypothetical protein atu4727 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 2.1e-32, 36.07% id in 316 aa; hypothetical protein complement(1116130..1117092) Bordetella parapertussis 12822 1666381 NP_883361.1 CDS BPP1040 NC_002928.3 1117127 1117756 R Similar to Agrobacterium tumefaciens StrC58 demethylmenaquinone methyltransferase MenG SWALL:AAL46017 (EMBL:AE008954) (227 aa) fasta scores: E(): 8.5e-19, 36.54% id in 197 aa, and to Bacillus halodurans hypothetical protein Bh1938 SWALL:YJ38_BACHD (SWALL:Q9KBI9) (210 aa) fasta scores: E(): 8e-19, 40.54% id in 185 aa; dimethylmenaquinone methyltransferase complement(1117127..1117756) Bordetella parapertussis 12822 1666382 NP_883362.1 CDS BPP1041 NC_002928.3 1117762 1118481 R Similar to Rhizobium meliloti hypothetical protein R01764 or Smc00503 SWALL:Q92PI9 (EMBL:AL591788) (244 aa) fasta scores: E(): 1.8e-38, 49.56% id in 230 aa, and to Yersinia pestis hypothetical protein Ypo0083 SWALL:Q8ZJL1 (EMBL:AJ414141) (310 aa) fasta scores: E(): 1.4e-40, 49.78% id in 233 aa; hypothetical protein complement(1117762..1118481) Bordetella parapertussis 12822 1666383 NP_883363.1 CDS BPP1042 NC_002928.3 1118581 1119288 D Similar to Streptomyces griseus glycerol operon regulatory protein GylR SWALL:GYLR_STRGR (SWALL:P22866) (254 aa) fasta scores: E(): 6.3e-05, 30.12% id in 249 aa, and to Streptomyces coelicolor transcriptional regulator Sc1c2.33C SWALL:O86533 (EMBL:AL031124) (238 aa) fasta scores: E(): 7.4e-06, 31.33% id in 217 aa; transcriptional regulator 1118581..1119288 Bordetella parapertussis 12822 1666384 NP_883364.1 CDS BPP1043 NC_002928.3 1119302 1120393 R Similar to Williopsis mrakii 2-nitropropane dioxygenase SWALL:2NPD_WILMR (SWALL:Q12723) (374 aa) fasta scores: E(): 3.9e-16, 33.04% id in 348 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4202 SWALL:Q9HWH9 (EMBL:AE004836) (351 aa) fasta scores: E(): 3.9e-65, 56.52% id in 345 aa; 2-nitropropane dioxygenase complement(1119302..1120393) Bordetella parapertussis 12822 1668081 NP_883365.1 CDS BPP1044 NC_002928.3 1120417 1121292 R Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa4203 SWALL:Q9HWH8 (EMBL:AE004837) (284 aa) fasta scores: E(): 4.4e-44, 53.59% id in 278 aa, and to Ralstonia solanacearum probable transcription regulator protein Rsc0804 or Rs05024 SWALL:Q8Y186 (EMBL:AL646061) (302 aa) fasta scores: E(): 9e-39, 46.02% id in 302 aa; LysR family transcriptional regulator complement(1120417..1121292) Bordetella parapertussis 12822 1668082 NP_883366.1 CDS BPP1045 NC_002928.3 1121356 1122288 R Similar to Rhizobium meliloti transmembrane protein R00347 or Smc00428 SWALL:Q92SM4 (EMBL:AL591783) (298 aa) fasta scores: E(): 1.4e-51, 60.21% id in 279 aa, and to Ralstonia solanacearum hypothetical transmembrane protein Rsp0685 or Rs01764 SWALL:Q8XRZ6 (EMBL:AL646080) (300 aa) fasta scores: E(): 9e-41, 51.25% id in 279 aa; hypothetical protein complement(1121356..1122288) Bordetella parapertussis 12822 1668083 NP_883367.1 CDS BPP1046 NC_002928.3 1122350 1123153 R Similar to Rhizobium meliloti transcription regulator protein R00348 or Smc00429 SWALL:Q92SM3 (EMBL:AL591783) (269 aa) fasta scores: E(): 2.8e-43, 50% id in 268 aa, and to Ralstonia solanacearum probable transcription regulator protein Rsp0686 or Rs01763 SWALL:Q8XRZ5 (EMBL:AL646080) (274 aa) fasta scores: E(): 4.3e-43, 52.83% id in 265 aa; AraC family transcription regulator complement(1122350..1123153) Bordetella parapertussis 12822 1668084 NP_883368.1 CDS BPP1047 NC_002928.3 1123202 1125004 R Similar to Rhizobium meliloti hypothetical protein Ra0050 or Sma0101 SWALL:Q930Z4 (EMBL:AE007199) (541 aa) fasta scores: E(): 5.1e-38, 31.91% id in 539 aa, and to Methanosarcina acetivorans strC2A. exoenzymes regulatory protein AepA SWALL:AAM04201 (EMBL:AE010738) (553 aa) fasta scores: E(): 1.3e-28, 39.56% id in 551 aa; lipoprotein complement(1123202..1125004) Bordetella parapertussis 12822 1668317 NP_883369.1 CDS BPP1048 NC_002928.3 1125257 1125481 D Similar to Pasteurella multocida hypothetical protein Pm1568 SWALL:Q9CKP1 (EMBL:AE006194) (70 aa) fasta scores: E(): 9.3e-12, 58.2% id in 67 aa, and to Neisseria meningitidis hypothetical protein Nma1258 or Nmb1059 SWALL:Q9JRB9 (EMBL:AL162755) (72 aa) fasta scores: E(): 2.8e-08, 49.27% id in 69 aa; hypothetical protein 1125257..1125481 Bordetella parapertussis 12822 1668318 NP_883370.1 CDS BPP1049 NC_002928.3 1125607 1126638 D Similar to Pseudomonas aeruginosa hypothetical protein Pa0141 SWALL:Q9I6Z1 (EMBL:AE004452) (298 aa) fasta scores: E(): 3.1e-66, 63.91% id in 266 aa, and to Brucella melitensis UDP-galactose-lipid carrier transferase Bmei1625 SWALL:Q8YF97 (EMBL:AE009598) (319 aa) fasta scores: E(): 3.6e-54, 51.32% id in 265 aa; hypothetical protein 1125607..1126638 Bordetella parapertussis 12822 1668319 NP_883371.1 CDS BPP1050 NC_002928.3 1126652 1126870 R Similar to Neisseria meningitidis SlyX protein homolog SlyX or Nma0371 SWALL:Q9JWH4 (EMBL:AL162753) (74 aa) fasta scores: E(): 0.0048, 32.43% id in 74 aa, and to Neisseria meningitidis SlyX protein, Nmb2063 SWALL:Q9JXG3 (EMBL:AE002556) (74 aa) fasta scores: E(): 0.01, 31.08% id in 74 aa; hypothetical protein complement(1126652..1126870) Bordetella parapertussis 12822 1668320 NP_883372.1 CDS BPP1051 NC_002928.3 1126948 1127430 D Similar to Pseudomonas lemoignei hypothetical 16.7 kDa protein in pahZ1 5'region SWALL:YPAH_PSELE (SWALL:P52089) (154 aa) fasta scores: E(): 1.3e-29, 59.35% id in 155 aa, and to Escherichia coli hypothetical protein YaiI or B0387 SWALL:YAII_ECOLI (SWALL:P52088) (152 aa) fasta scores: E(): 8.1e-28, 56.57% id in 152 aa; hypothetical protein 1126948..1127430 Bordetella parapertussis 12822 1668321 NP_883373.1 CDS ilvA NC_002928.3 1127611 1129191 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 1127611..1129191 Bordetella parapertussis 12822 1668322 NP_883374.1 CDS BPP1053 NC_002928.3 1129484 1129798 D Similar to Agrobacterium tumefaciens hypothetical protein Atu0477 or Agr_c_842 SWALL:AAL41496 (EMBL:AE009017) (107 aa) fasta scores: E(): 4.2e-09, 42.42% id in 99 aa, and to Brucella melitensis hypothetical protein Bmei0495 SWALL:Q8YIE9 (EMBL:AE009492) (96 aa) fasta scores: E(): 9e-08, 47.91% id in 96 aa; hypothetical protein 1129484..1129798 Bordetella parapertussis 12822 1668323 NP_883375.1 CDS BPP1054 NC_002928.3 1129821 1130528 R ortholog of Bordetella pertussis (BX470248) BP2946; ArsR family transcriptional regulator complement(1129821..1130528) Bordetella parapertussis 12822 1668324 NP_883376.1 CDS BPP1055 NC_002928.3 1130732 1131898 D ortholog of Bordetella pertussis (BX470248) BP2945; acyl-CoA dehydrogenase 1130732..1131898 Bordetella parapertussis 12822 1668325 NP_883377.1 CDS BPP1056 NC_002928.3 1131912 1132379 D ortholog of Bordetella pertussis (BX470248) BP2944; hypothetical protein 1131912..1132379 Bordetella parapertussis 12822 1666632 NP_883378.1 CDS BPP1057 NC_002928.3 1132404 1133393 D ortholog of Bordetella pertussis (BX470248) BP2943; hypothetical protein 1132404..1133393 Bordetella parapertussis 12822 1666633 NP_883379.1 CDS BPP1058 NC_002928.3 1133406 1134317 R ortholog of Bordetella pertussis (BX470248) BP2942; LysR family transcriptional regulator complement(1133406..1134317) Bordetella parapertussis 12822 1666634 NP_883380.1 CDS BPP1059 NC_002928.3 1134443 1135564 D ortholog of Bordetella pertussis (BX470248) BP2941; racemase 1134443..1135564 Bordetella parapertussis 12822 1667528 NP_883381.1 CDS BPP1060 NC_002928.3 1135561 1136811 R ortholog of Bordetella pertussis (BX470248) BP2940; integral membrane protein complement(1135561..1136811) Bordetella parapertussis 12822 1667529 NP_883382.1 CDS BPP1061 NC_002928.3 1136912 1137784 D ortholog of Bordetella pertussis (BX470248) BP2939; LysR family transcriptional regulator 1136912..1137784 Bordetella parapertussis 12822 1667530 NP_883383.1 CDS BPP1062 NC_002928.3 1137901 1138506 D ortholog of Bordetella pertussis (BX470248) BP2938; hypothetical protein 1137901..1138506 Bordetella parapertussis 12822 1667531 NP_883384.1 CDS BPP1064 NC_002928.3 1139661 1140569 D ortholog of Bordetella pertussis (BX470248) BP2936; hypothetical protein 1139661..1140569 Bordetella parapertussis 12822 1667533 NP_883385.1 CDS BPP1065 NC_002928.3 1140764 1141975 D ortholog of Bordetella pertussis (BX470248) BP2935; two component system, histidine kinase 1140764..1141975 Bordetella parapertussis 12822 1667150 NP_883386.1 CDS BPP1066 NC_002928.3 1141972 1142526 D ortholog of Bordetella pertussis (BX470248) BP2934; two component system response regulator 1141972..1142526 Bordetella parapertussis 12822 1667151 NP_883387.1 CDS cyoA NC_002928.3 1142735 1143649 D ortholog of Bordetella pertussis (BX470248) BP2933; ubiquinol oxidase subunit II 1142735..1143649 Bordetella parapertussis 12822 1667152 NP_883388.1 CDS cyoB NC_002928.3 1143650 1145632 D ortholog of Bordetella pertussis (BX470248) BP2932; ubiquinol oxidase subunit I 1143650..1145632 Bordetella parapertussis 12822 1667153 NP_883389.1 CDS cyoC NC_002928.3 1145636 1146247 D ortholog of Bordetella pertussis (BX470248) BP2931; cytochrome O ubiquinol oxidase 1145636..1146247 Bordetella parapertussis 12822 1667154 NP_883390.1 CDS cyoD NC_002928.3 1146247 1146594 D ortholog of Bordetella pertussis (BX470248) BP2930; cytochrome 0 ubiquinol oxidase 1146247..1146594 Bordetella parapertussis 12822 1664906 NP_883391.1 CDS BPP1071 NC_002928.3 1146712 1147059 R ortholog of Bordetella pertussis (BX470248) BP2929; regulatory protein complement(1146712..1147059) Bordetella parapertussis 12822 1664907 NP_883392.1 CDS BPP1073 NC_002928.3 1148654 1149151 R ortholog of Bordetella pertussis (BX470248) BP2927; integral membrane protein complement(1148654..1149151) Bordetella parapertussis 12822 1664909 NP_883393.1 CDS BPP1074 NC_002928.3 1149155 1149910 R ortholog of Bordetella pertussis (BX470248) BP2926; hypothetical protein complement(1149155..1149910) Bordetella parapertussis 12822 1664910 NP_883394.1 CDS BPP1075 NC_002928.3 1149925 1150794 R ortholog of Bordetella pertussis (BX470248) BP2925; hypothetical protein complement(1149925..1150794) Bordetella parapertussis 12822 1664911 NP_883395.1 CDS BPP1076 NC_002928.3 1150806 1151138 R ortholog of Bordetella pertussis (BX470248) BP2924; hypothetical protein complement(1150806..1151138) Bordetella parapertussis 12822 1664912 NP_883396.1 CDS BPP1077 NC_002928.3 1151414 1151851 D ortholog of Bordetella pertussis (BX470248) BP2923; lipoprotein 1151414..1151851 Bordetella parapertussis 12822 1664913 NP_883397.1 CDS bfrG NC_002928.3 1152014 1154212 D ortholog of Bordetella pertussis (BX470248) BP2922; TonB-dependent receptor 1152014..1154212 Bordetella parapertussis 12822 1665923 NP_883398.1 CDS BPP1079 NC_002928.3 1154224 1155693 D ortholog of Bordetella pertussis (BX470248) BP2921; hypothetical protein 1154224..1155693 Bordetella parapertussis 12822 1665924 NP_883399.1 CDS BPP1080 NC_002928.3 1155696 1156925 R ortholog of Bordetella pertussis (BX470248) BP2920; chromate transport protein complement(1155696..1156925) Bordetella parapertussis 12822 1665925 NP_883400.1 CDS BPP1081 NC_002928.3 1157150 1157737 D ortholog of Bordetella pertussis (BX470248) BP2919; lipoprotein 1157150..1157737 Bordetella parapertussis 12822 1665926 NP_883401.1 CDS BPP1082 NC_002928.3 1157859 1158272 D ortholog of Bordetella pertussis (BX470248) BP2918; hypothetical protein 1157859..1158272 Bordetella parapertussis 12822 1665927 NP_883402.1 CDS BPP1083 NC_002928.3 1158280 1158732 R ortholog of Bordetella pertussis (BX470248) BP2917; hypothetical protein complement(1158280..1158732) Bordetella parapertussis 12822 1666433 NP_883403.1 CDS BPP1084 NC_002928.3 1158863 1159345 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 1158863..1159345 Bordetella parapertussis 12822 1666434 NP_883404.1 CDS BPP1085 NC_002928.3 1159485 1159853 D ortholog of Bordetella pertussis (BX470248) BP2915; hypothetical protein 1159485..1159853 Bordetella parapertussis 12822 1666435 NP_883405.1 CDS BPP1086 NC_002928.3 1159904 1160431 D ortholog of Bordetella pertussis (BX470248) BP2914; RNA polymerase sigma factor 1159904..1160431 Bordetella parapertussis 12822 1666945 NP_883406.1 CDS BPP1087 NC_002928.3 1160428 1161219 D ortholog of Bordetella pertussis (BX470248) BP2913; hypothetical protein 1160428..1161219 Bordetella parapertussis 12822 1666946 NP_883407.1 CDS BPP1088 NC_002928.3 1161241 1162032 R ortholog of Bordetella pertussis (BX470248) BP2725; hypothetical protein complement(1161241..1162032) Bordetella parapertussis 12822 1666947 NP_883408.1 CDS BPP1089 NC_002928.3 1162064 1162768 R ortholog of Bordetella pertussis (BX470248) BP2726; oxidoreductase complement(1162064..1162768) Bordetella parapertussis 12822 1666948 NP_883409.1 CDS BPP1090 NC_002928.3 1162843 1163643 R ortholog of Bordetella pertussis (BX470248) BP2727; exported SurF1-family protein complement(1162843..1163643) Bordetella parapertussis 12822 1666949 NP_883410.1 CDS BPP1091 NC_002928.3 1163640 1164047 R ortholog of Bordetella pertussis (BX470248) BP2728; cytochrome ubiquinol oxidase subunit IV complement(1163640..1164047) Bordetella parapertussis 12822 1666950 NP_883411.1 CDS BPP1092 NC_002928.3 1164044 1164565 R ortholog of Bordetella pertussis (BX470248) BP2729; cytochrome ubiquinol oxidase subunit III complement(1164044..1164565) Bordetella parapertussis 12822 1666951 NP_883412.1 CDS BPP1093 NC_002928.3 1164678 1166699 R ortholog of Bordetella pertussis (BX470248) BP2730; cytochrome ubiquinol oxidase subunit I complement(1164678..1166699) Bordetella parapertussis 12822 1666952 NP_883413.1 CDS BPP1094 NC_002928.3 1166736 1167701 R ortholog of Bordetella pertussis (BX470248) BP2731; ubiquinol oxidase subunit II complement(1166736..1167701) Bordetella parapertussis 12822 1667219 NP_883414.1 CDS BPP1095 NC_002928.3 1167938 1169275 D ortholog of Bordetella pertussis (BX470248) BP2732; membrane transport protein 1167938..1169275 Bordetella parapertussis 12822 1667220 NP_883415.1 CDS BPP1096 NC_002928.3 1169383 1169784 D Similar to Pseudomonas aeruginosa hypothetical protein Pa4111 SWALL:Q9HWR9 (EMBL:AE004827) (132 aa) fasta scores: E(): 6.5e-29, 62.4% id in 133 aa; hypothetical protein 1169383..1169784 Bordetella parapertussis 12822 1667221 NP_883416.1 CDS BPP1097 NC_002928.3 1169797 1170783 R Similar to Ralstonia solanacearum probable amino-acid dehydratase Rsp1516 or Rs04793 SWALL:Q8XPX0 (EMBL:AL646085) (323 aa) fasta scores: E(): 3.9e-34, 37.74% id in 310 aa, and to Streptomyces coelicolor threonine dehydratase Sc5f8.02C SWALL:Q9K4M2 (EMBL:AL357613) (319 aa) fasta scores: E(): 2.1e-33, 40.43% id in 319 aa; amino-acid dehydratase complement(1169797..1170783) Bordetella parapertussis 12822 1667222 NP_883417.1 CDS BPP1098 NC_002928.3 1170914 1171780 R Similar to Pseudomonas aeruginosa hypothetical protein Pa1360 SWALL:Q9I3Y4 (EMBL:AE004565) (297 aa) fasta scores: E(): 1.4e-67, 68.68% id in 281 aa, and to Yersinia pestis membrane protein Ypo2507 SWALL:Q8ZDP9 (EMBL:AJ414152) (295 aa) fasta scores: E(): 3.2e-61, 60.85% id in 281 aa; hypothetical protein complement(1170914..1171780) Bordetella parapertussis 12822 1667223 NP_883418.1 CDS BPP1099 NC_002928.3 1171829 1172254 R Similar to Methanococcus jannaschii hypothetical protein Mj0531 SWALL:Y531_METJA (SWALL:Q57951) (170 aa) fasta scores: E(): 3e-06, 31.2% id in 141 aa, and to Methanosarcina acetivorans StrC2A universal stress protein Ma3286 SWALL:AAM06656 (EMBL:AE011032) (150 aa) fasta scores: E(): 1.5e-05, 30.49% id in 141 aa; universal stress protein complement(1171829..1172254) Bordetella parapertussis 12822 1667224 NP_883419.1 CDS BPP1100 NC_002928.3 1172433 1173005 D Similar to Ralstonia solanacearum probable transmembrane protein Rsc0979 or rs04313 SWALL:Q8Y0R4 (EMBL:AL646062) (193 aa) fasta scores: E(): 1.7e-28, 45.21% id in 188 aa; chromate transporter 1172433..1173005 Bordetella parapertussis 12822 1667706 NP_883420.1 CDS BPP1101 NC_002928.3 1173002 1173523 D Similar to Ralstonia solanacearum probable transmembrane protein Rsc0980 or Rs04384 SWALL:Q8Y0R3 (EMBL:AL646062) (181 aa) fasta scores: E(): 5.4e-20, 39.39% id in 165 aa, and to Bacillus subtilis hypothetical protein YwrA SWALL:O05215 (EMBL:Z93767) (178 aa) fasta scores: E(): 5.4e-11, 28.9% id in 173 aa; chromate transporter 1173002..1173523 Bordetella parapertussis 12822 1667707 NP_883421.1 CDS BPP1102 NC_002928.3 1173543 1174661 R Similar to Ralstonia solanacearum hypothetical protein Rsc3159 or Rs00439 SWALL:Q8XUM8 (EMBL:AL646074) (376 aa) fasta scores: E(): 1.7e-97, 68.08% id in 376 aa, and to Neisseria meningitidis hypothetical protein Nma1400 SWALL:Q9JUB9 (EMBL:AL162755) (331 aa) fasta scores: E(): 4.6e-58, 50.3% id in 328 aa; hypothetical protein complement(1173543..1174661) Bordetella parapertussis 12822 1667708 NP_883422.1 CDS fdsD NC_002928.3 1174797 1175045 R Similar to Alcaligenes eutrophus NAD-dependent formate dehydrogenase delta subunit FdsD SWALL:O87817 (EMBL:AJ223295) (127 aa) fasta scores: E(): 7.9e-10, 54.68% id in 64 aa, and to Rhizobium meliloti NAD-dependent formate dehydrogenase delta subunit FdsD or R03007 or Smc03086 SWALL:Q9EZD5 (EMBL:AF298190) (77 aa) fasta scores: E(): 8.1e-06, 44.28% id in 70 aa; NAD-dependent formate dehydrogenase subunit delta complement(1174797..1175045) Bordetella parapertussis 12822 1667709 NP_883423.1 CDS fdhD NC_002928.3 1175057 1175887 R involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein complement(1175057..1175887) Bordetella parapertussis 12822 1667710 NP_883424.1 CDS fdsA NC_002928.3 1175903 1178779 R Similar to Alcaligenes eutrophus NAD-dependent formate dehydrogenase alpha subunit FdsA SWALL:O87815 (EMBL:AJ223295) (959 aa) fasta scores: E(): 0, 75.94% id in 952 aa, and to Rhizobium meliloti probable NAD-dependent formate dehydrogenase alpha subunit protein FdsA or R03009 or Smc04444 SWALL:Q92LN1 (EMBL:AL591792) (959 aa) fasta scores: E(): 0, 73.09% id in 944 aa; NAD-dependent formate dehydrogenase subunit alpha complement(1175903..1178779) Bordetella parapertussis 12822 1667711 NP_883425.1 CDS fdsG NC_002928.3 1180364 1180855 R catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma complement(1180364..1180855) Bordetella parapertussis 12822 1664802 NP_883426.1 CDS BPP1108 NC_002928.3 1181110 1182177 D ortholog of Bordetella pertussis (BX470248) BP2705; molybdenum-binding protein 1181110..1182177 Bordetella parapertussis 12822 1664803 NP_883427.1 CDS moaA NC_002928.3 1182188 1183285 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 1182188..1183285 Bordetella parapertussis 12822 1664804 NP_883428.1 CDS moeA NC_002928.3 1183427 1184632 R ortholog of Bordetella pertussis (BX470248) BP2707; molybdopterin cofactor biosynthesis protein complement(1183427..1184632) Bordetella parapertussis 12822 1664805 NP_883429.1 CDS moaB NC_002928.3 1184639 1185160 R ortholog of Bordetella pertussis (BX470248) BP2708; molybdenum cofactor biosynthesis protein complement(1184639..1185160) Bordetella parapertussis 12822 1664806 NP_883430.1 CDS moaE NC_002928.3 1185157 1185648 R ortholog of Bordetella pertussis (BX470248) BP2709; molybdopterin converting factor complement(1185157..1185648) Bordetella parapertussis 12822 1664807 NP_883431.1 CDS moaD NC_002928.3 1185645 1185896 R ortholog of Bordetella pertussis (BX470248) BP2710; molybdopterin converting factor complement(1185645..1185896) Bordetella parapertussis 12822 1666261 NP_883432.1 CDS moaC NC_002928.3 1185877 1186362 R ortholog of Bordetella pertussis (BX470248) BP2711; molybdenum cofactor biosynthesis protein complement(1185877..1186362) Bordetella parapertussis 12822 1666262 NP_883433.1 CDS BPP1115 NC_002928.3 1186498 1189941 D ortholog of Bordetella pertussis (BX470248) BP2712; hypothetical protein 1186498..1189941 Bordetella parapertussis 12822 1666263 NP_883434.1 CDS BPP1116 NC_002928.3 1189938 1190843 D ortholog of Bordetella pertussis (BX470248) BP2713; hydrolase 1189938..1190843 Bordetella parapertussis 12822 1666264 NP_883435.1 CDS BPP1117 NC_002928.3 1190853 1191284 R ortholog of Bordetella pertussis (BX470248) BP2714; lipoprotein complement(1190853..1191284) Bordetella parapertussis 12822 1666265 NP_883436.1 CDS BPP1118 NC_002928.3 1191475 1192026 D ortholog of Bordetella pertussis (BX470248) BP2715; AhpC/TSA-family protein 1191475..1192026 Bordetella parapertussis 12822 1666266 NP_883437.1 CDS BPP1119 NC_002928.3 1192038 1193504 D ortholog of Bordetella pertussis (BX470248) BP2716; membrane transport protein 1192038..1193504 Bordetella parapertussis 12822 1666267 NP_883438.1 CDS BPP1120 NC_002928.3 1193618 1194493 R ortholog of Bordetella pertussis (BX470248) BP2717; hypothetical protein complement(1193618..1194493) Bordetella parapertussis 12822 1666268 NP_883439.1 CDS BPP1121 NC_002928.3 1194490 1195497 R ortholog of Bordetella pertussis (BX470248) BP2718; biotin synthase complement(1194490..1195497) Bordetella parapertussis 12822 1666269 NP_883440.1 CDS BPP1122 NC_002928.3 1195966 1196271 D Similar to Caulobacter crescentus hypothetical protein Cc1398 SWALL:Q9A8F6 (EMBL:AE005814) (130 aa) fasta scores: E(): 4.2, 39.13% id in 69 aa. Also similar to BPP1123 (70% id), BPP4018 (49% id), BPP0099 (41% id), BPP0743 (40% id), BPP1997 (40% id).; hypothetical protein 1195966..1196271 Bordetella parapertussis 12822 1666298 NP_883441.1 CDS BPP1123 NC_002928.3 1196335 1196640 D ortholog of Bordetella pertussis (BX470248) BP2719; hypothetical protein 1196335..1196640 Bordetella parapertussis 12822 1666299 NP_883442.1 CDS BPP1124 NC_002928.3 1196764 1197354 D ortholog of Bordetella pertussis (BX470248) BP2720; TetR family transcriptional regulator 1196764..1197354 Bordetella parapertussis 12822 1666300 NP_883443.1 CDS BPP1125 NC_002928.3 1198129 1199022 R Similar to Streptomyces hygroscopicus carboxyvinyl-carboxyphosphonate phosphorylmutase BcpA SWALL:CPPM_STRHY (SWALL:P11435) (294 aa) fasta scores: E(): 2.4e-31, 35.73% id in 291 aa, and to Pyrobaculum aerophilum carboxyphosphonoenolpyruvate phosphonomutase Pae1716 SWALL:Q8ZWM5 (EMBL:AE009835) (308 aa) fasta scores: E(): 2e-32, 38.4% id in 289 aa; carboxyvinyl-carboxyphosphonate phosphorylmutase complement(1198129..1199022) Bordetella parapertussis 12822 1666301 NP_883444.1 CDS acnA NC_002928.3 1199222 1201906 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1199222..1201906 Bordetella parapertussis 12822 1666302 NP_883445.1 CDS BPP1127 NC_002928.3 1201931 1203304 D Similar to Escherichia coli allantoinase AllB or GlxB3 or B0512 SWALL:ALN_ECOLI (SWALL:P77671) (453 aa) fasta scores: E(): 4.1e-36, 31.6% id in 443 aa, and to Arthrobacter aurescens L-hydantoinase HyuH hyuH SWALL:Q9F465 (EMBL:AF146701) (458 aa) fasta scores: E(): 9.7e-41, 32.59% id in 451 aa; dihydroorotase-like protein 1201931..1203304 Bordetella parapertussis 12822 1666303 NP_883446.1 CDS BPP1128 NC_002928.3 1203338 1204057 D Similar to Arthrobacter sp N-carbamoylsarcosine amidase SWALL:CSH_ARTSP (SWALL:P32400) (264 aa) fasta scores: E(): 4.8e-12, 32.32% id in 232 aa, and to Arthrobacter keyseri phthalate ester hydrolase PehA SWALL:Q9AGK9 (EMBL:AF331043) (218 aa) fasta scores: E(): 2.1e-15, 33.01% id in 212 aa; hydrolase 1203338..1204057 Bordetella parapertussis 12822 1666304 NP_883447.1 CDS BPP1129 NC_002928.3 1204068 1205069 D Similar to Salmonella typhimurium cobalamin synthesis protein YjiA or Stm4530 SWALL:Q8ZJY6 (EMBL:AE008913) (318 aa) fasta scores: E(): 7.8e-24, 33.23% id in 325 aa, and to Brucella melitensis CobW protein Bmei0036 SWALL:Q8YJP6 (EMBL:AE009447) (388 aa) fasta scores: E(): 1.2e-23, 35.5% id in 369 aa; hypothetical protein 1204068..1205069 Bordetella parapertussis 12822 1666529 NP_883448.1 CDS BPP1130 NC_002928.3 1205207 1206226 D Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 2e-30, 35.38% id in 325 aa, and to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.6e-39, 37.72% id in 326 aa; hypothetical protein 1205207..1206226 Bordetella parapertussis 12822 1666530 NP_883449.1 CDS BPP1131 NC_002928.3 1206245 1207630 D Similar to Shewanella frigidimarina fumarate reductase flavoprotein subunit precursor IfcA SWALL:FRD2_SHEFR (SWALL:Q9Z4P0) (588 aa) fasta scores: E(): 4.3e-27, 29.13% id in 453 aa, and to Fusobacterium nucleatum subspnucleatum ATCC 25586 fumarate reductase flavoprotein subunit Fn0050 SWALL:AAL94263 (EMBL:AE010520) (558 aa) fasta scores: E(): 3.7e-30, 28.16% id in 458 aa; fumarate reductase flavoprotein subunit 1206245..1207630 Bordetella parapertussis 12822 1666531 NP_883450.1 CDS BPP1132 NC_002928.3 1207627 1209003 D Similar to Methanothermobacter thermautotrophicus conserved protein mth965 SWALL:O27046 (EMBL:AE000870) (452 aa) fasta scores: E(): 3.4e-26, 30.67% id in 427 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0881 pa0881 SWALL:Q9I564 (EMBL:AE004522) (450 aa) fasta scores: E(): 1.1e-23, 29.59% id in 446 aa; hypothetical protein 1207627..1209003 Bordetella parapertussis 12822 1666532 NP_883451.1 CDS BPP1133 NC_002928.3 1209072 1210067 D Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 7.1e-45, 42.07% id in 328 aa, and to Rhizobium meliloti hypothetical protein Ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.4e-47, 43.76% id in 329 aa; hypothetical protein 1209072..1210067 Bordetella parapertussis 12822 1666533 NP_883452.1 CDS BPP1134 NC_002928.3 1210098 1211483 R Similar to Rhizobium loti hypothetical protein Mll9010 SWALL:Q982L5 (EMBL:AP003015) (457 aa) fasta scores: E(): 1.1e-23, 30.04% id in 436 aa, and to Rhizobium loti hypothetical protein Mlr6217 mlr6217 SWALL:Q98A01 (EMBL:AP003008) (446 aa) fasta scores: E(): 3.3e-17, 28% id in 432 aa; hypothetical protein complement(1210098..1211483) Bordetella parapertussis 12822 1666534 NP_883453.1 CDS BPP1135 NC_002928.3 1211480 1212178 R Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa0797 SWALL:Q9I5E1 (EMBL:AE004515) (240 aa) fasta scores: E(): 6.9e-29, 39.64% id in 227 aa, and to Vibrio cholerae transcriptional regulator, GntR family Vc1335 SWALL:Q9KSC3 (EMBL:AE004213) (235 aa) fasta scores: E(): 9.2e-26, 36.9% id in 233 aa; GntR family transcriptional regulator complement(1211480..1212178) Bordetella parapertussis 12822 1666535 NP_883454.1 CDS BPP1136 NC_002928.3 1213015 1214022 D ortholog of Bordetella pertussis (BX470248) BP1036; aldo/keto reductase 1213015..1214022 Bordetella parapertussis 12822 1664881 NP_883455.1 CDS corC NC_002928.3 1215636 1216538 R ortholog of Bordetella pertussis (BX470248) BP1038; magnesium and cobalt efflux protein complement(1215636..1216538) Bordetella parapertussis 12822 1666537 NP_883456.1 CDS BPP1139 NC_002928.3 1216664 1217137 R ortholog of Bordetella pertussis (BX470248) BP1039; metalloprotease complement(1216664..1217137) Bordetella parapertussis 12822 1666853 NP_883457.1 CDS BPP1140 NC_002928.3 1217127 1218149 R ortholog of Bordetella pertussis (BX470248) BP1040; PhoH-like protein complement(1217127..1218149) Bordetella parapertussis 12822 1666854 NP_883458.1 CDS BPP1141 NC_002928.3 1218146 1219573 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1218146..1219573) Bordetella parapertussis 12822 1666855 NP_883459.1 CDS BPP1142 NC_002928.3 1219730 1220458 D ortholog of Bordetella pertussis (BX470248) BP1042; hypothetical protein 1219730..1220458 Bordetella parapertussis 12822 1666856 NP_883460.1 CDS secF NC_002928.3 1220621 1221556 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(1220621..1221556) Bordetella parapertussis 12822 1666857 NP_883461.1 CDS secD NC_002928.3 1221606 1223486 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(1221606..1223486) Bordetella parapertussis 12822 1666858 NP_883462.1 CDS BPP1145 NC_002928.3 1223553 1223897 R ortholog of Bordetella pertussis (BX470248) BP1047; hypothetical protein complement(1223553..1223897) Bordetella parapertussis 12822 1665362 NP_883463.1 CDS tgt NC_002928.3 1224048 1225184 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1224048..1225184) Bordetella parapertussis 12822 1665363 NP_883464.1 CDS queA NC_002928.3 1225181 1226254 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(1225181..1226254) Bordetella parapertussis 12822 1665364 NP_883465.1 CDS BPP1148 NC_002928.3 1226412 1227848 D ortholog of Bordetella pertussis (BX470248) BP1051; D-alanyl-D-alanine carboxypeptidase 1226412..1227848 Bordetella parapertussis 12822 1665365 NP_883466.1 CDS upp NC_002928.3 1227938 1228579 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1227938..1228579 Bordetella parapertussis 12822 1665366 NP_883467.1 CDS prn NC_002928.3 1229069 1231837 D ortholog of Bordetella pertussis (BX470248) BP1054; pertactin precursor 1229069..1231837 Bordetella parapertussis 12822 1665367 NP_883468.1 CDS cysG NC_002928.3 1231905 1233326 R ortholog of Bordetella pertussis (BX470248) BP1055; siroheme synthase complement(1231905..1233326) Bordetella parapertussis 12822 1665368 NP_883469.1 CDS BPP1152 NC_002928.3 1233432 1234307 D ortholog of Bordetella pertussis (BX470248) BP1056; hypothetical protein 1233432..1234307 Bordetella parapertussis 12822 1665218 NP_883470.1 CDS BPP1153 NC_002928.3 1234392 1234709 D ortholog of Bordetella pertussis (BX470248) BP1057; hypothetical protein 1234392..1234709 Bordetella parapertussis 12822 1665219 NP_883471.1 CDS BPP1154 NC_002928.3 1234750 1235163 D ortholog of Bordetella pertussis (BX470248) BP1058; hypothetical protein 1234750..1235163 Bordetella parapertussis 12822 1665220 NP_883472.1 CDS BPP1155 NC_002928.3 1235165 1235524 D ortholog of Bordetella pertussis (BX470248) BP1059; hypothetical protein 1235165..1235524 Bordetella parapertussis 12822 1665221 NP_883473.1 CDS ubiD NC_002928.3 1235567 1237111 R ortholog of Bordetella pertussis (BX470248) BP1060; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(1235567..1237111) Bordetella parapertussis 12822 1665222 NP_883474.1 CDS BPP1157 NC_002928.3 1237195 1238025 D ortholog of Bordetella pertussis (BX470248) BP1061; transglycosylase 1237195..1238025 Bordetella parapertussis 12822 1665223 NP_883475.1 CDS BPP1158 NC_002928.3 1238060 1239214 R ortholog of Bordetella pertussis (BX470248) BP1062; aminotransferase complement(1238060..1239214) Bordetella parapertussis 12822 1665224 NP_883476.1 CDS maeB NC_002928.3 1240144 1242531 D NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate; malic enzyme 1240144..1242531 Bordetella parapertussis 12822 1667435 NP_883477.1 CDS BPP1161 NC_002928.3 1242512 1243744 D ortholog of Bordetella pertussis (BX470248) BP1065; hypothetical protein 1242512..1243744 Bordetella parapertussis 12822 1667436 NP_883478.1 CDS BPP1162 NC_002928.3 1243741 1244205 D ortholog of Bordetella pertussis (BX470248) BP1066; hypothetical protein 1243741..1244205 Bordetella parapertussis 12822 1667437 NP_883479.1 CDS BPP1163 NC_002928.3 1244232 1244972 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1244232..1244972) Bordetella parapertussis 12822 1667438 NP_883480.1 CDS tktA NC_002928.3 1245167 1247203 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1245167..1247203 Bordetella parapertussis 12822 1664991 NP_883481.1 CDS gap NC_002928.3 1247221 1248231 D ortholog of Bordetella pertussis (BX470248) BP1000; glyceraldehyde-3-phosphate dehydrogenase 1247221..1248231 Bordetella parapertussis 12822 1664992 NP_883482.1 CDS pgk NC_002928.3 1248265 1249542 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1248265..1249542 Bordetella parapertussis 12822 1664993 NP_883483.1 CDS fabI NC_002928.3 1249572 1250345 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase complement(1249572..1250345) Bordetella parapertussis 12822 1664994 NP_883484.1 CDS ackA NC_002928.3 1250342 1251532 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1250342..1251532) Bordetella parapertussis 12822 1664995 NP_883485.1 CDS BPP1169 NC_002928.3 1251558 1252496 R catalyzes the formation of acetyl phosphate from acetyl-CoA and phosphate; can also act with other short-chain acyl-CoAs; phosphate acetyltransferase complement(1251558..1252496) Bordetella parapertussis 12822 1667582 NP_883486.1 CDS BPP1170 NC_002928.3 1252493 1254766 R ortholog of Bordetella pertussis (BX470248) BP1005; hypothetical protein complement(1252493..1254766) Bordetella parapertussis 12822 1667583 NP_883487.1 CDS BPP1171 NC_002928.3 1254921 1255628 R ortholog of Bordetella pertussis (BX470248) BP1006; glutathione S-transferase complement(1254921..1255628) Bordetella parapertussis 12822 1667584 NP_883488.1 CDS BPP1172 NC_002928.3 1255666 1255995 R ortholog of Bordetella pertussis (BX470248) BP1008; hypothetical protein complement(1255666..1255995) Bordetella parapertussis 12822 1667585 NP_883489.1 CDS BPP1173 NC_002928.3 1256027 1256575 R ortholog of Bordetella pertussis (BX470248) BP1009; hypothetical protein complement(1256027..1256575) Bordetella parapertussis 12822 1667586 NP_883490.1 CDS BPP1174 NC_002928.3 1256594 1257079 R ortholog of Bordetella pertussis (BX470248) BP1010; acetyltransferase complement(1256594..1257079) Bordetella parapertussis 12822 1667587 NP_883491.1 CDS cbpA NC_002928.3 1257257 1258195 D ortholog of Bordetella pertussis (BX470248) BP1011; curved DNA-binding protein 1257257..1258195 Bordetella parapertussis 12822 1667588 NP_883492.1 CDS BPP1176 NC_002928.3 1258198 1258515 D ortholog of Bordetella pertussis (BX470248) BP1012; hypothetical protein 1258198..1258515 Bordetella parapertussis 12822 1667589 NP_883493.1 CDS BPP1177 NC_002928.3 1258561 1259274 D ortholog of Bordetella pertussis (BX470248) BP1013; Similar to Escherichia coli hypothetical protein YgaZ or B2682 SWALL:YGAZ_ECOLI (SWALL:P76630) (245 aa) fasta scores: E(): 1.7e-24, 37.82% id in 230 aa, and to Yersinia pestis amino acid transporter Ypo3264 SWALL:Q8ZBX0 (EMBL:AJ414156) (257 aa) fasta scores: E(): 4.5e-23, 38.72% id in 235 aa; hypothetical protein 1258561..1259274 Bordetella parapertussis 12822 1667590 NP_883494.1 CDS BPP1178 NC_002928.3 1259271 1259615 D ortholog of Bordetella pertussis (BX470248) BP1013; Similar to Mus musculus interferon stimulated gene 12 Isg12 SWALL:AAM10443 (EMBL:AY090098) (90 aa) fasta scores: E(): 3.2, 41.42% id in 70 aa; hypothetical protein 1259271..1259615 Bordetella parapertussis 12822 1667591 NP_883495.1 CDS pitA NC_002928.3 1259636 1261303 R ortholog of Bordetella pertussis (BX470248) BP1014; phosphate transporter complement(1259636..1261303) Bordetella parapertussis 12822 1667592 NP_883496.1 CDS mogA NC_002928.3 1261287 1261946 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 1261287..1261946 Bordetella parapertussis 12822 1664773 NP_883497.1 CDS BPP1181 NC_002928.3 1262000 1262335 D ortholog of Bordetella pertussis (BX470248) BP1016; hypothetical protein 1262000..1262335 Bordetella parapertussis 12822 1664774 NP_883498.1 CDS BPP1182 NC_002928.3 1262326 1263192 D ortholog of Bordetella pertussis (BX470248) BP1017; peptidase 1262326..1263192 Bordetella parapertussis 12822 1664775 NP_883499.1 CDS BPP1183 NC_002928.3 1263209 1263490 R ortholog of Bordetella pertussis (BX470248) BP1018; hypothetical protein complement(1263209..1263490) Bordetella parapertussis 12822 1664776 NP_883500.1 CDS infA NC_002928.3 1263564 1263827 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1263564..1263827) Bordetella parapertussis 12822 1664777 NP_883501.1 CDS BPP1185 NC_002928.3 1264190 1264594 R ortholog of Bordetella pertussis (BX470248) BP1512; hypothetical protein complement(1264190..1264594) Bordetella parapertussis 12822 1664778 NP_883502.1 CDS BPP1186 NC_002928.3 1264668 1265867 R Catalyzes the reversible two-electron oxidation of formate to carbon dioxide. It allows the assimilation of carbon dioxide and provides energy for growth through oxidative phosphorylation coupled to the reduction of oxygen, nitrate, sulphate or fumarate; formate dehydrogenase complement(1264668..1265867) Bordetella parapertussis 12822 1664779 NP_883503.1 CDS BPP1187 NC_002928.3 1265901 1266227 R ortholog of Bordetella pertussis (BX470248) BP1514; hypothetical protein complement(1265901..1266227) Bordetella parapertussis 12822 1664987 NP_883504.1 CDS BPP1188 NC_002928.3 1266250 1266765 R ortholog of Bordetella pertussis (BX470248) BP1515; transporter protein complement(1266250..1266765) Bordetella parapertussis 12822 1664988 NP_883505.1 CDS fmdA NC_002928.3 1266824 1268065 R ortholog of Bordetella pertussis (BX470248) BP1516; formamidase complement(1266824..1268065) Bordetella parapertussis 12822 1664989 NP_883506.1 CDS BPP1190 NC_002928.3 1268243 1269373 R ortholog of Bordetella pertussis (BX470248) BP1517; LuxR family transcriptional regulator complement(1268243..1269373) Bordetella parapertussis 12822 1664990 NP_883507.1 CDS BPP1191 NC_002928.3 1269608 1270150 D ortholog of Bordetella pertussis (BX470248) BP1518; hypothetical protein 1269608..1270150 Bordetella parapertussis 12822 1667171 NP_883508.1 CDS fba NC_002928.3 1270326 1271390 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 1270326..1271390 Bordetella parapertussis 12822 1667172 NP_883509.1 CDS BPP1193 NC_002928.3 1271476 1271889 R ortholog of Bordetella pertussis (BX470248) BP1520; hypothetical protein complement(1271476..1271889) Bordetella parapertussis 12822 1667173 NP_883510.1 CDS hemH NC_002928.3 1272115 1272996 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1272115..1272996 Bordetella parapertussis 12822 1667174 NP_883511.1 CDS BPP1195 NC_002928.3 1273062 1273241 D ortholog of Bordetella pertussis (BX470248) BP1522; hypothetical protein 1273062..1273241 Bordetella parapertussis 12822 1667175 NP_883512.1 CDS BPP1196 NC_002928.3 1273442 1273678 D ortholog of Bordetella pertussis (BX470248) BP1524; hypothetical protein 1273442..1273678 Bordetella parapertussis 12822 1667177 NP_883513.1 CDS BPP1197 NC_002928.3 1273686 1274165 D ortholog of Bordetella pertussis (BX470248) BP1525; hypothetical protein 1273686..1274165 Bordetella parapertussis 12822 1667178 NP_883514.1 CDS purE NC_002928.3 1274388 1274828 D ortholog of Bordetella pertussis (BX470248) BP1526; phosphoribosylaminoimidazole carboxylase catalytic subunit 1274388..1274828 Bordetella parapertussis 12822 1667179 NP_883515.1 CDS purK NC_002928.3 1274831 1276021 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1274831..1276021 Bordetella parapertussis 12822 1667180 NP_883516.1 CDS BPP1200 NC_002928.3 1276026 1277078 D ortholog of Bordetella pertussis (BX470248) BP1528; hypothetical protein 1276026..1277078 Bordetella parapertussis 12822 1667626 NP_883517.1 CDS BPP1201 NC_002928.3 1277215 1278237 D ortholog of Bordetella pertussis (BX470248) BP1529; extracellular solute-binding protein 1277215..1278237 Bordetella parapertussis 12822 1667627 NP_883518.1 CDS BPP1202 NC_002928.3 1278329 1279165 D ortholog of Bordetella pertussis (BX470248) BP1530; transcriptional regulator 1278329..1279165 Bordetella parapertussis 12822 1667628 NP_883519.1 CDS BPP1203 NC_002928.3 1279358 1280263 D ortholog of Bordetella pertussis (BX470248) BP1531; arginase 1279358..1280263 Bordetella parapertussis 12822 1667629 NP_883520.1 CDS BPP1204 NC_002928.3 1280290 1281081 D ortholog of Bordetella pertussis (BX470248) BP1532; amino acid-binding periplasmic protein 1280290..1281081 Bordetella parapertussis 12822 1667630 NP_883521.1 CDS BPP1205 NC_002928.3 1281104 1281796 D ortholog of Bordetella pertussis (BX470248) BP1533; inner membrane component of binding-protein-dependent transport system 1281104..1281796 Bordetella parapertussis 12822 1667631 NP_883522.1 CDS BPP1206 NC_002928.3 1281818 1282570 D ortholog of Bordetella pertussis (BX470248) BP1534; ABC transporter ATP-binding protein 1281818..1282570 Bordetella parapertussis 12822 1667632 NP_883523.1 CDS BPP1208 NC_002928.3 1284289 1284834 D ortholog of Bordetella pertussis (BX470248) BP1536; hypothetical protein 1284289..1284834 Bordetella parapertussis 12822 1664932 NP_883524.1 CDS gcdH NC_002928.3 1285065 1286321 R ortholog of Bordetella pertussis (BX470248) BP1537; glutaryl-CoA dehydrogenase complement(1285065..1286321) Bordetella parapertussis 12822 1664933 NP_883525.1 CDS ilvG NC_002928.3 1286338 1288101 R catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; thiamine pyrophosphate protein complement(1286338..1288101) Bordetella parapertussis 12822 1664934 NP_883526.1 CDS BPP1211 NC_002928.3 1288124 1288954 D ortholog of Bordetella pertussis (BX470248) BP1539; LysR family transcriptional regulator 1288124..1288954 Bordetella parapertussis 12822 1667550 NP_883527.1 CDS xerD NC_002928.3 1288992 1289924 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 1288992..1289924 Bordetella parapertussis 12822 1667551 NP_883528.1 CDS BPP1213 NC_002928.3 1289938 1290426 D ortholog of Bordetella pertussis (BX470248) BP1541; hypothetical protein 1289938..1290426 Bordetella parapertussis 12822 1667461 NP_883529.1 CDS BPP1214 NC_002928.3 1290495 1291124 D ortholog of Bordetella pertussis (BX470248) BP1542; hypothetical protein 1290495..1291124 Bordetella parapertussis 12822 1667462 NP_883530.1 CDS BPP1215 NC_002928.3 1291186 1291587 D ortholog of Bordetella pertussis (BX470248) BP1543; hypothetical protein 1291186..1291587 Bordetella parapertussis 12822 1667463 NP_883531.1 CDS pbpG NC_002928.3 1291594 1292373 R ortholog of Bordetella pertussis (BX470248) BP1545; D-alanyl-D-alanine carboxypeptidase complement(1291594..1292373) Bordetella parapertussis 12822 1667464 NP_883532.1 CDS BPP1217 NC_002928.3 1292372 1292632 D ortholog of Bordetella pertussis (BX470248) BP1545A; hypothetical protein 1292372..1292632 Bordetella parapertussis 12822 1667465 NP_883533.1 CDS BPP1218 NC_002928.3 1293441 1294643 D ortholog of Bordetella pertussis (BX470248) BP1546; hypothetical protein 1293441..1294643 Bordetella parapertussis 12822 1667466 NP_883534.1 CDS BPP1219 NC_002928.3 1294847 1297507 D ortholog of Bordetella pertussis (BX470248) BP1547; hypothetical protein 1294847..1297507 Bordetella parapertussis 12822 1667467 NP_883535.1 CDS BPP1220 NC_002928.3 1297520 1300924 D ortholog of Bordetella pertussis (BX470248) BP1548; nuclease/helicase 1297520..1300924 Bordetella parapertussis 12822 1667468 NP_883536.1 CDS dnaX NC_002928.3 1301628 1303754 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1301628..1303754 Bordetella parapertussis 12822 1667469 NP_883537.1 CDS BPP1222 NC_002928.3 1303801 1304127 D ortholog of Bordetella pertussis (BX470248) BP1550; hypothetical protein 1303801..1304127 Bordetella parapertussis 12822 1666071 NP_883538.1 CDS recR NC_002928.3 1304135 1304785 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1304135..1304785 Bordetella parapertussis 12822 1666072 NP_883539.1 CDS BPP1224 NC_002928.3 1304860 1306110 D Similar to Pseudomonas aeruginosa hypothetical protein Pa3733 SWALL:Q9HXQ9 (EMBL:AE004792) (409 aa) fasta scores: E(): 1.1e-42, 59.36% id in 411 aa, and to Ralstonia solanacearum hypothetical protein Rsc1197 or Rs05729 SWALL:Q8Y047 (EMBL:AL646063) (405 aa) fasta scores: E(): 5.1e-39, 56.69% id in 411 aa; hypothetical protein 1304860..1306110 Bordetella parapertussis 12822 1666073 NP_883540.1 CDS BPP1225 NC_002928.3 1306216 1307253 D Similar to Ralstonia solanacearum probable signal peptide protein Rsc1198 or Rs05730 SWALL:Q8Y046 (EMBL:AL646063) (349 aa) fasta scores: E(): 4.3e-70, 61.51% id in 330 aa, and to Brucella melitensis taurine-binding periplasmic protein precursor Bmeii0963 SWALL:Q8YBD7 (EMBL:AE009729) (320 aa) fasta scores: E(): 4.5e-48, 46.92% id in 309 aa; hypothetical protein 1306216..1307253 Bordetella parapertussis 12822 1666074 NP_883541.1 CDS BPP1226 NC_002928.3 1307246 1308055 D Similar to Ralstonia solanacearum probable ATP-binding ABC transporter protein Rsc1199 or Rs02665 SWALL:Q8Y045 (EMBL:AL646063) (270 aa) fasta scores: E(): 5.1e-70, 78.43% id in 269 aa, and to Brucella melitensis taurine transport ATP-binding protein TauB or Bmeii0961 SWALL:Q8YBD9 (EMBL:AE009729) (281 aa) fasta scores: E(): 1.7e-48, 55.55% id in 261 aa; ABC transporter ATP-binding protein 1307246..1308055 Bordetella parapertussis 12822 1666075 NP_883542.1 CDS BPP1227 NC_002928.3 1308059 1308853 D Similar to Ralstonia solanacearum probable transmembrane permease ABC transporter protein Rsc1200 or Rs02669 SWALL:Q8Y044 (EMBL:AL646063) (263 aa) fasta scores: E(): 1.7e-80, 81.53% id in 260 aa, and to Brucella melitensis taurine transport permease TauC or Bmeii0962 SWALL:Q8YBD8 (EMBL:AE009729) (263 aa) fasta scores: E(): 1.5e-55, 61.84% id in 249 aa; transmembrane permease ABC transporter protein 1308059..1308853 Bordetella parapertussis 12822 1666076 NP_883543.1 CDS talB NC_002928.3 1308895 1309857 R Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B complement(1308895..1309857) Bordetella parapertussis 12822 1666077 NP_883544.1 CDS carA NC_002928.3 1310195 1311238 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1310195..1311238 Bordetella parapertussis 12822 1666591 NP_883545.1 CDS carB NC_002928.3 1311249 1314491 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1311249..1314491 Bordetella parapertussis 12822 1666592 NP_883546.1 CDS BPP1231 NC_002928.3 1314553 1315773 R transposase for IS1001 element; transposase complement(1314553..1315773) Bordetella parapertussis 12822 1668262 NP_883547.1 CDS BPP1232 NC_002928.3 1315921 1316337 D peptidyl-tRNA hydrolase domain-containing protein 1315921..1316337 Bordetella parapertussis 12822 1668263 NP_883548.1 CDS bipA NC_002928.3 1316680 1319301 D ortholog of Bordetella pertussis (BX470248) BP1112; outer membrane ligand binding protein 1316680..1319301 Bordetella parapertussis 12822 1665002 NP_883549.1 CDS BPP1236 NC_002928.3 1321527 1322495 D ortholog of Bordetella pertussis (BX470248) BP1115; hydrolase 1321527..1322495 Bordetella parapertussis 12822 1665004 NP_883550.1 CDS BPP1237 NC_002928.3 1322565 1323410 D ortholog of Bordetella pertussis (BX470248) BP1116; hypothetical protein 1322565..1323410 Bordetella parapertussis 12822 1665005 NP_883551.1 CDS greB NC_002928.3 1323478 1324032 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 1323478..1324032 Bordetella parapertussis 12822 1665006 NP_883552.1 CDS BPP1240 NC_002928.3 1325385 1326683 R ortholog of Bordetella pertussis (BX470248) BP2670; membrane permease complement(1325385..1326683) Bordetella parapertussis 12822 1665631 NP_883553.1 CDS BPP1241 NC_002928.3 1326680 1327261 R ortholog of Bordetella pertussis (BX470248) BP2669; integral membrane protein complement(1326680..1327261) Bordetella parapertussis 12822 1665632 NP_883554.1 CDS purL NC_002928.3 1327574 1331620 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1327574..1331620 Bordetella parapertussis 12822 1665633 NP_883555.1 CDS fhaS NC_002928.3 1331868 1339673 D ortholog of Bordetella pertussis (BX470248) BP2667; adhesin 1331868..1339673 Bordetella parapertussis 12822 1665634 NP_883556.1 CDS BPP1244 NC_002928.3 1339766 1341238 D Similar to Homo sapiens glutamate carboxypeptidase-like protein 2 Cpgl2 SWALL:Q96KN2 (EMBL:AJ417564) (508 aa) fasta scores: E(): 3e-18, 27.12% id in 494 aa, and to Agrobacterium tumefaciens succinyl-diaminopimelate desuccinylase DapE or Atu0108 or Agr_c_165 SWALL:AAK85928 (EMBL:AE008984) (507 aa) fasta scores: E(): 3.2e-15, 26.89% id in 476 aa; peptidase 1339766..1341238 Bordetella parapertussis 12822 1665635 NP_883557.1 CDS BPP1245 NC_002928.3 1341272 1341823 D Similar to Xylella fastidiosa hypothetical protein Xf1204 SWALL:Q9PE24 (EMBL:AE003954) (185 aa) fasta scores: E(): 1.3e-31, 52.94% id in 170 aa, and to Neisseria meningitidis hypothetical protein Nmb0572 SWALL:Q9K0M0 (EMBL:AE002413) (201 aa) fasta scores: E(): 1.6e-30, 53.48% id in 172 aa; hypothetical protein 1341272..1341823 Bordetella parapertussis 12822 1665636 NP_883558.1 CDS BPP1246 NC_002928.3 1341938 1343230 R Similar to Mus musculus acyl coenzyme A thioester hydrolase, mitochondrial precursor Mte1 SWALL:MTE1_MOUSE (SWALL:Q9QYR9) (453 aa) fasta scores: E(): 3.1e-19, 28.6% id in 437 aa, and to Ralstonia solanacearum acyl coenzyme A thioester hydrolase Rsc1887 or Rs03449 SWALL:Q8XY76 (EMBL:AL646067) (635 aa) fasta scores: E(): 2.1e-62, 43.61% id in 431 aa; acyl coenzyme A thioester hydrolase complement(1341938..1343230) Bordetella parapertussis 12822 1665637 NP_883559.1 CDS BPP1247 NC_002928.3 1343242 1344228 R Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.4e-33, 36.13% id in 321 aa, and to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 7.8e-35, 36.11% id in 324 aa; hypothetical protein complement(1343242..1344228) Bordetella parapertussis 12822 1667867 NP_883560.1 CDS BPP1248 NC_002928.3 1344426 1345262 R Similar to Ralstonia solanacearum hypothetical protein Rsc3157 or Rs00441 SWALL:Q8XUN0 (EMBL:AL646074) (278 aa) fasta scores: E(): 1.2e-83, 76.34% id in 279 aa; hypothetical protein complement(1344426..1345262) Bordetella parapertussis 12822 1667868 NP_883561.1 CDS BPP1249 NC_002928.3 1345399 1346007 D Similar to Agrobacterium tumefaciens hypothetical protein Atu3812 or Agr_l_2041 SWALL:AAL44622 (EMBL:AE009312) (135 aa) fasta scores: E(): 3e-17, 51.4% id in 107 aa, and to Rhizobium loti hypothetical protein Mll1528 SWALL:Q98KD4 (EMBL:AP002997) (141 aa) fasta scores: E(): 3.8e-16, 45.29% id in 117 aa; hypothetical protein 1345399..1346007 Bordetella parapertussis 12822 1667869 NP_883562.1 CDS BPP1250 NC_002928.3 1346136 1346933 D Similar to Ralstonia solanacearum probable transmembrane protein Rsc1541 or Rs03761 SWALL:Q8XZ63 (EMBL:AL646065) (273 aa) fasta scores: E(): 7.2e-33, 49.61% id in 262 aa, and to Anabaena sp hypothetical protein Alr3906 SWALL:Q8YQC7 (EMBL:AP003594) (282 aa) fasta scores: E(): 3.8e-16, 32.96% id in 270 aa; hypothetical protein 1346136..1346933 Bordetella parapertussis 12822 1667870 NP_883563.1 CDS BPP1251 NC_002928.3 1346930 1347745 D Similar to Bradyrhizobium japonicum thiol:disulfide interchange protein TlpA SWALL:TLPA_BRAJA (SWALL:P43221) (221 aa) fasta scores: E(): 2.8e-08, 31.81% id in 198 aa, and to Pseudomonas aeruginosa probable thiol:disulfide interchange protein Pa2477 SWALL:Q9I105 (EMBL:AE004675) (278 aa) fasta scores: E(): 7e-35, 45.48% id in 266 aa; thiol:disulfide interchange protein 1346930..1347745 Bordetella parapertussis 12822 1667871 NP_883564.1 CDS dsbG NC_002928.3 1347775 1348611 D Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 1347775..1348611 Bordetella parapertussis 12822 1667872 NP_883565.1 CDS BPP1253 NC_002928.3 1348608 1348925 D hypothetical protein 1348608..1348925 Bordetella parapertussis 12822 1667873 NP_883566.1 CDS BPP1254 NC_002928.3 1349386 1350060 R Similar to the C-terminal region of Bacteriophage K139 hypothetical 33.8 kDa protein SWALL:Q9XJG0 (EMBL:AF125163) (301 aa) fasta scores: E(): 3.2e-16, 30.76% id in 182 aa; hypothetical protein complement(1349386..1350060) Bordetella parapertussis 12822 1667874 NP_883567.1 CDS BPP1255 NC_002928.3 1350373 1351500 D ortholog of Bordetella pertussis (BX470248) BP2629; transcriptional regulator 1350373..1351500 Bordetella parapertussis 12822 1667875 NP_883568.1 CDS BPP1256 NC_002928.3 1351750 1353906 D ortholog of Bordetella pertussis (BX470248) BP2627; autotransporter 1351750..1353906 Bordetella parapertussis 12822 1667876 NP_883569.1 CDS BPP1257 NC_002928.3 1353903 1354514 R ortholog of Bordetella pertussis (BX470248) BP2626; hypothetical protein complement(1353903..1354514) Bordetella parapertussis 12822 1667877 NP_883570.1 CDS guaB NC_002928.3 1354737 1356197 D ortholog of Bordetella pertussis (BX470248) BP2625; inosine-5'-monophosphate dehydrogenase 1354737..1356197 Bordetella parapertussis 12822 1667878 NP_883571.1 CDS guaA NC_002928.3 1356294 1357886 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1356294..1357886 Bordetella parapertussis 12822 1665122 NP_883572.1 CDS BPP1260 NC_002928.3 1357966 1358127 D Similar to Bacteroides nodosus VrlI SWALL:O86180 (EMBL:U20246) (67 aa) fasta scores: E(): 0.0075, 30.61% id in 49 aa, and to Bacteriophage SPP1 Orf37.3 SWALL:Q38149 (EMBL:X67865) (57 aa) fasta scores: E(): 0.017, 36.36% id in 44 aa; hypothetical protein 1357966..1358127 Bordetella parapertussis 12822 1667823 NP_883573.1 CDS BPP1263 NC_002928.3 1360964 1361746 D hypothetical protein 1360964..1361746 Bordetella parapertussis 12822 1667825 NP_883574.1 CDS yeeB NC_002928.3 1361743 1363800 D Similar to Bacillus subtilis hypothetical protein YeeB SWALL:O34469 (EMBL:Z99107) (598 aa) fasta scores: E(): 2e-90, 48.96% id in 627 aa; hypothetical protein 1361743..1363800 Bordetella parapertussis 12822 1667826 NP_883575.1 CDS yeeC NC_002928.3 1363793 1364989 D Similar to Bacillus subtilis hypothetical protein YeeC SWALL:O34352 (EMBL:Z99107) (382 aa) fasta scores: E(): 7.2e-30, 35.69% id in 367 aa; hypothetical protein 1363793..1364989 Bordetella parapertussis 12822 1667827 NP_883576.1 CDS BPP1266 NC_002928.3 1365047 1366153 D hypothetical protein 1365047..1366153 Bordetella parapertussis 12822 1667828 NP_883577.1 CDS BPP1267 NC_002928.3 1366198 1366398 D hypothetical protein 1366198..1366398 Bordetella parapertussis 12822 1667829 NP_883578.1 CDS BPP1268 NC_002928.3 1366738 1367427 R ortholog of Bordetella pertussis (BX470248) BP2621; TetR family transcriptional regulator complement(1366738..1367427) Bordetella parapertussis 12822 1667830 NP_883579.1 CDS BPP1269 NC_002928.3 1367440 1368870 D ortholog of Bordetella pertussis (BX470248) BP2620; membrane efflux protein 1367440..1368870 Bordetella parapertussis 12822 1667831 NP_883580.1 CDS BPP1270 NC_002928.3 1368903 1370090 R Similar to Pseudomonas aeruginosa hypothetical protein Pa1352 SWALL:Q9I3Z2 (EMBL:AE004564) (403 aa) fasta scores: E(): 5.1e-81, 61.85% id in 388 aa, and to Rhizobium meliloti hypothetical protein Ra1073 or Sma1959 SWALL:Q92Y15 (EMBL:AE007293) (469 aa) fasta scores: E(): 3.8e-62, 49.86% id in 381 aa; hypothetical protein complement(1368903..1370090) Bordetella parapertussis 12822 1667832 NP_883581.1 CDS BPP1271 NC_002928.3 1370266 1370694 D Similar to Pseudomonas aeruginosa hypothetical protein Pa1607 SWALL:Q9I3B4 (EMBL:AE004588) (146 aa) fasta scores: E(): 7.4e-24, 52.89% id in 138 aa, and to Rhizobium meliloti hypothetical protein Ra1074 or Sma1960 SWALL:Q92Y14 (EMBL:AE007293) (125 aa) fasta scores: E(): 6.6e-20, 57.4% id in 108 aa; transcriptional regulator 1370266..1370694 Bordetella parapertussis 12822 1667833 NP_883582.1 CDS BPP1272 NC_002928.3 1370798 1371889 D ortholog of Bordetella pertussis (BX470248) BP2619; C4-dicarboxylate transporter 1370798..1371889 Bordetella parapertussis 12822 1667834 NP_883583.1 CDS BPP1273 NC_002928.3 1371867 1372517 R Similar to Rhizobium meliloti probable Gst14 glutatione S-transferase Gst14 or Ra1248 or Sma2319 SWALL:Q92XJ6 (EMBL:AE007309) (198 aa) fasta scores: E(): 8.3e-58, 75.63% id in 197 aa, and to Caulobacter crescentus glutathione S-transferase Cc2309 SWALL:Q9A5Y8 (EMBL:AE005901) (220 aa) fasta scores: E(): 8.1e-55, 66.51% id in 215 aa; glutatione S-transferase complement(1371867..1372517) Bordetella parapertussis 12822 1666727 NP_883584.1 CDS BPP1274 NC_002928.3 1372514 1373707 R ortholog of Bordetella pertussis (BX470248) BP2611; transcriptional regulator complement(1372514..1373707) Bordetella parapertussis 12822 1666728 NP_883585.1 CDS BPP1275 NC_002928.3 1373768 1375495 R ortholog of Bordetella pertussis (BX470248) BP2610; solute transport protein complement(1373768..1375495) Bordetella parapertussis 12822 1666729 NP_883586.1 CDS BPP1276 NC_002928.3 1375607 1376965 D ortholog of Bordetella pertussis (BX470248) BP2609; hypothetical protein 1375607..1376965 Bordetella parapertussis 12822 1666730 NP_883587.1 CDS BPP1277 NC_002928.3 1376985 1377890 R Similar to Vibrio cholerae transcriptional regulator, AraC/XylS family Vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 4.6e-22, 31.55% id in 263 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa5342 SWALL:Q9HTL6 (EMBL:AE004946) (266 aa) fasta scores: E(): 2.1e-20, 35.17% id in 253 aa; AraC family transcription regulator complement(1376985..1377890) Bordetella parapertussis 12822 1666731 NP_883588.1 CDS BPP1278 NC_002928.3 1378174 1379163 D Similar to Alcaligenes eutrophus hypothetical 35.6 kDa protein in gbd 5'region precursor SWALL:YGB7_ALCEU (SWALL:Q44018) (327 aa) fasta scores: E(): 9.5e-48, 44.47% id in 317 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 9e-25, 32.82% id in 326 aa; hypothetical protein 1378174..1379163 Bordetella parapertussis 12822 1666732 NP_883589.1 CDS BPP1279 NC_002928.3 1379189 1380280 D Similar to Pseudomonas aeruginosa hypothetical protein Pa2211 SWALL:Q9I1Q6 (EMBL:AE004647) (319 aa) fasta scores: E(): 3e-11, 34.01% id in 341 aa, and to Rhizobium loti hypothetical protein Mlr1708 SWALL:Q98JZ6 (EMBL:AP002998) (295 aa) fasta scores: E(): 2.7e-08, 30.9% id in 330 aa; hypothetical protein 1379189..1380280 Bordetella parapertussis 12822 1666565 NP_883590.1 CDS BPP1279A NC_002928.3 1380345 >1380638 R The N-terminal region of this CDS is deleted relative to its orthologue in B. bronchiseptica. Similar to Rhizobium meliloti hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.7e-09, 40.62% id in 96 aa, and to Agrobacterium tumefaciens hypothetical protein atu4727 atu4727 or agr_l_312 SWALL:Q8U6S9 (EMBL:AE009401) (329 aa) fasta scores: E(): 4.6e-09, 40% id in 95 aa; hypothetical protein complement(1380345..>1380638) Bordetella parapertussis 12822 1666566 NP_883591.1 CDS BPP1280 NC_002928.3 <1380624 1381562 D The N-terminal region of this CDS is deleted relative to its B. bronchiseptica orthologue. Similar to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.7e-47, 45.17% id in 321 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 2.4e-38, 37.5% id in 296 aa; hypothetical protein <1380624..1381562 Bordetella parapertussis 12822 1666567 NP_883592.1 CDS BPP1281 NC_002928.3 1381691 1382944 D Similar to Brucella melitensis predicted acyl-CoA transferases/carnitine dehydratase Bmei0898 SWALL:Q8YHA4 (EMBL:AE009530) (400 aa) fasta scores: E(): 1.9e-52, 39.42% id in 383 aa, and to Rhizobium meliloti conserved membrane-anchored protein Rb0848 or Smb21182 SWALL:Q92V66 (EMBL:AL603645) (394 aa) fasta scores: E(): 1.9e-54, 39.34% id in 394 aa; acyl-CoA transferase/carnitine dehydratase 1381691..1382944 Bordetella parapertussis 12822 1666568 NP_883593.1 CDS BPP1283 NC_002928.3 1384113 1384529 D Similar to Methanothermobacter thermautotrophicus conserved protein Mth1398 SWALL:O27449 (EMBL:AE000902) (133 aa) fasta scores: E(): 1.5e-06, 32.72% id in 110 aa, and to Methanopyrus kandleri AV19 predicted nucleic-acid-binding protein containing a zn-ribbon Mk1377 SWALL:AAM02590 (EMBL:AE010431) (134 aa) fasta scores: E(): 6.6e-10, 39.31% id in 117 aa; hypothetical protein 1384113..1384529 Bordetella parapertussis 12822 1666570 NP_883594.1 CDS BPP1284 NC_002928.3 1384545 1385450 D Similar to Pseudomonas paucimobilis 2-pyrone-4,6-dicarboxylic acid hydrolase LigI SWALL:O87170 (EMBL:AB015964) (293 aa) fasta scores: E(): 4.4e-34, 37.45% id in 275 aa, and to Yersinia pestis Orf45 ypo1933 SWALL:Q9ZC43 (EMBL:AL031866) (289 aa) fasta scores: E(): 5.4e-47, 44.64% id in 280 aa; 2-pyrone-4,6-dicarboxylic acid hydrolase 1384545..1385450 Bordetella parapertussis 12822 1666571 NP_883595.1 CDS BPP1285 NC_002928.3 1385447 1386799 D Similar to Bacillus subtilis hypothetical protein YxeQ or Lp9I SWALL:YXEQ_BACSU (SWALL:P54956) (445 aa) fasta scores: E(): 2.7e-32, 30.78% id in 432 aa, and to Agrobacterium tumefaciens hypothetical protein Atu3361 or Agr_l_2924 SWALL:AAL44174 (EMBL:AE009266) (448 aa) fasta scores: E(): 9.5e-32, 31.48% id in 397 aa; hypothetical protein 1385447..1386799 Bordetella parapertussis 12822 1666572 NP_883596.1 CDS gabG NC_002928.3 1386862 1388334 D Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or B2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 2.6e-115, 61.61% id in 482 aa, and to Pseudomonas aeruginosa succinate-semialdehyde dehydrogenase GabD or Pa0265 SWALL:Q9I6M5 (EMBL:AE004464) (483 aa) fasta scores: E(): 2.6e-115, 61.57% id in 484 aa; succinate-semialdehyde dehydrogenase 1386862..1388334 Bordetella parapertussis 12822 1666573 NP_883597.1 CDS BPP1288 NC_002928.3 1389326 1390387 R Similar to Rhizobium sp hypothetical 33.9 kDa protein Y4mH SWALL:Y4MH_RHISN (SWALL:P55567) (297 aa) fasta scores: E(): 5.8e-05, 31.92% id in 332 aa, and to Streptomyces coelicolor conserved hypothetical protein Sc9a4.22C SWALL:Q9FBT2 (EMBL:AL391072) (277 aa) fasta scores: E(): 0.00017, 29.63% id in 324 aa; hypothetical protein complement(1389326..1390387) Bordetella parapertussis 12822 1666127 NP_883598.1 CDS BPP1289 NC_002928.3 1390581 1391570 D Similar to Agrobacterium tumefaciens hypothetical protein Atu4727 or Agr_l_312 SWALL:AAK88723 (EMBL:AE009401) (329 aa) fasta scores: E(): 2.6e-39, 38.18% id in 330 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 4.4e-35, 36.92% id in 325 aa; hypothetical protein 1390581..1391570 Bordetella parapertussis 12822 1666128 NP_883599.1 CDS BPP1290 NC_002928.3 1391718 1392788 D ortholog of Bordetella pertussis (BX470248) BP2607; hypothetical protein 1391718..1392788 Bordetella parapertussis 12822 1666129 NP_883600.1 CDS BPP1291 NC_002928.3 1392835 1394319 R ortholog of Bordetella pertussis (BX470248) BP2599; GntR family transcriptional regulator complement(1392835..1394319) Bordetella parapertussis 12822 1666130 NP_883601.1 CDS BPP1292 NC_002928.3 1394400 1395023 D ortholog of Bordetella pertussis (BX470248) BP2598; hypothetical protein 1394400..1395023 Bordetella parapertussis 12822 1666131 NP_883602.1 CDS BPP1293 NC_002928.3 1395054 1395665 D ortholog of Bordetella pertussis (BX470248) BP2597; membrane transport protein 1395054..1395665 Bordetella parapertussis 12822 1666132 NP_883603.1 CDS BPP1294 NC_002928.3 1395701 1396171 D ortholog of Bordetella pertussis (BX470248) BP2596; hypothetical protein 1395701..1396171 Bordetella parapertussis 12822 1665404 NP_883604.1 CDS BPP1295 NC_002928.3 1396382 1397650 D ortholog of Bordetella pertussis (BX470248) BP2595; peptidase 1396382..1397650 Bordetella parapertussis 12822 1665405 NP_883605.1 CDS BPP1296 NC_002928.3 1397687 1399201 D ortholog of Bordetella pertussis (BX470248) BP2594; ABC transport protein, solute binding component 1397687..1399201 Bordetella parapertussis 12822 1665406 NP_883606.1 CDS BPP1297 NC_002928.3 1399205 1400164 D ortholog of Bordetella pertussis (BX470248) BP2593; ABC transport protein inner membrane component 1399205..1400164 Bordetella parapertussis 12822 1665407 NP_883607.1 CDS BPP1299 NC_002928.3 1400996 1402630 D ortholog of Bordetella pertussis (BX470248) BP2591; ABC transporter ATP-binding protein 1400996..1402630 Bordetella parapertussis 12822 1665409 NP_883608.1 CDS BPP1300 NC_002928.3 1402714 1403775 D ortholog of Bordetella pertussis (BX470248) BP2590; LacI family transcriptional regulator 1402714..1403775 Bordetella parapertussis 12822 1665187 NP_883609.1 CDS BPP1301 NC_002928.3 1404247 1404771 D ortholog of Bordetella pertussis (BX470248) BP2589; DNA-binding protein 1404247..1404771 Bordetella parapertussis 12822 1665188 NP_883610.1 CDS BPP1302 NC_002928.3 1404780 1405238 R ortholog of Bordetella pertussis (BX470248) BP2588; regulatory protein complement(1404780..1405238) Bordetella parapertussis 12822 1665189 NP_883611.1 CDS BPP1303 NC_002928.3 1405322 1405816 D Similar to Brucella melitensis hypothetical membrane spanning protein Bmeii0616 SWALL:Q8YCB6 (EMBL:AE009697) (162 aa) fasta scores: E(): 8.1e-18, 39.1% id in 156 aa, and to Rhizobium loti hypothetical protein Mll7507 SWALL:Q985V9 (EMBL:AP003012) (167 aa) fasta scores: E(): 1.7e-17, 39.49% id in 157 aa; hypothetical protein 1405322..1405816 Bordetella parapertussis 12822 1665190 NP_883612.1 CDS BPP1304 NC_002928.3 1405857 1407011 R Similar to Thermoplasma volcanium L-carnitine dehydratase Tv1186 or Tvg1215416 SWALL:Q979H5 (EMBL:AP000995) (399 aa) fasta scores: E(): 1.6e-53, 39.08% id in 371 aa, and to Rhizobium meliloti conserved membrane-anchored protein Rb0848 or Smb21182 SWALL:Q92V66 (EMBL:AL603645) (394 aa) fasta scores: E(): 3.5e-50, 37.83% id in 378 aa; hypothetical protein complement(1405857..1407011) Bordetella parapertussis 12822 1665191 NP_883613.1 CDS BPP1305 NC_002928.3 1407008 1407874 R Similar to Pseudomonas aeruginosa (R)-specific enoyl-CoA hydratase Phaj2 or Pa1018 SWALL:Q9LBK1 (EMBL:AB040026) (288 aa) fasta scores: E(): 2.7e-41, 43.55% id in 287 aa, and to Mycobacterium tuberculosis hypothetical 30.2 kDa protein Ufaa2 or Rv3538 or Mt3642 or Mtcy03c7.18C SWALL:P71863 (EMBL:Z82098) (286 aa) fasta scores: E(): 8.9e-30, 38.94% id in 285 aa; (R)-specific enoyl-CoA hydratase complement(1407008..1407874) Bordetella parapertussis 12822 1665192 NP_883614.1 CDS BPP1306 NC_002928.3 1407888 1408856 R Similar to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.4e-48, 44.89% id in 323 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 9.3e-39, 38.31% id in 321 aa; hypothetical protein complement(1407888..1408856) Bordetella parapertussis 12822 1665193 NP_883615.1 CDS BPP1307 NC_002928.3 1408882 1409625 R Similar to Deinococcus radiodurans transcriptional regulator, GntR family Dra0211 SWALL:Q9RYU6 (EMBL:AE001863) (279 aa) fasta scores: E(): 3e-12, 32.91% id in 237 aa, and to Ralstonia solanacearum DNA-binding transcriptional regulator Rsp0079 or Rs05542 SWALL:Q8XTM7 (EMBL:AL646076) (273 aa) fasta scores: E(): 5.5e-11, 30.9% id in 220 aa; GntR family transcriptional regulator complement(1408882..1409625) Bordetella parapertussis 12822 1665701 NP_883616.1 CDS BPP1308 NC_002928.3 1409807 1410796 R Similar to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.5e-43, 42.03% id in 314 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 9.3e-40, 39.51% id in 329 aa; hypothetical protein complement(1409807..1410796) Bordetella parapertussis 12822 1665702 NP_883617.1 CDS BPP1309 NC_002928.3 1410832 1411902 R Similar to Pseudomonas aeruginosa hypothetical oxidoreductase Pa1252 SWALL:YC52_PSEAE (SWALL:Q9I492) (334 aa) fasta scores: E(): 3.1e-38, 39.03% id in 333 aa, and to Agrobacterium tumefaciens malate dehydrogenase Mdh or Atu0164 or Agr_c_268 SWALL:AAL41188 (EMBL:AE008990) (346 aa) fasta scores: E(): 3.4e-37, 36.73% id in 343 aa; malate/L-lactate dehydrogenase complement(1410832..1411902) Bordetella parapertussis 12822 1665703 NP_883618.1 CDS BPP1310 NC_002928.3 1411914 1413104 R Similar to Ralstonia solanacearum hypothetical transmembrane protein Rsp1590 or Rs02147 SWALL:Q8XPP8 (EMBL:AL646085) (398 aa) fasta scores: E(): 6.5e-50, 37.72% id in 387 aa, and to Rhizobium loti hypothetical protein Mll4416 SWALL:Q98E45 (EMBL:AP003004) (388 aa) fasta scores: E(): 2e-42, 34.52% id in 391 aa; FAD dependent oxidoreductase complement(1411914..1413104) Bordetella parapertussis 12822 1665704 NP_883619.1 CDS proC NC_002928.3 1413216 1414010 D Similar to Pseudomonas aeruginosa pyrroline-5-carboxylate reductase ProC or Pa0393 SWALL:PROC_PSEAE (SWALL:P22008) (272 aa) fasta scores: E(): 1.2e-27, 45.45% id in 264 aa, and to Caulobacter crescentus pyrroline-5-carboxylate reductase Cc0494 SWALL:Q9AAU9 (EMBL:AE005722) (260 aa) fasta scores: E(): 1.2e-23, 43.56% id in 264 aa; pyrroline-5-carboxylate reductase 1413216..1414010 Bordetella parapertussis 12822 1665705 NP_883620.1 CDS BPP1312 NC_002928.3 1414026 1414679 R Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa1269 SWALL:Q9I475 (EMBL:AE004556) (222 aa) fasta scores: E(): 6.3e-24, 41.17% id in 204 aa, and to Rhizobium loti transcriptional regulator Mlr7144 SWALL:Q986Z8 (EMBL:AP003011) (253 aa) fasta scores: E(): 1.9e-18, 37.43% id in 203 aa; GntR family transcriptional regulator complement(1414026..1414679) Bordetella parapertussis 12822 1665706 NP_883621.1 CDS BPP1313 NC_002928.3 1414900 1415376 D Similar to Bacteriophage T4 hypothetical 17.1 kDa protein in gp30-riiI intergenic region Y12g or 30.3 SWALL:Y12G_BPT4 (SWALL:P32276) (152 aa) fasta scores: E(): 6.3e-07, 32.66% id in 150 aa, and to Bacteriophage RB69 Gp30.3 30.3 SWALL:CAD28421 (EMBL:AJ439452) (137 aa) fasta scores: E(): 5.1e-06, 33.62% id in 113 aa; hypothetical protein 1414900..1415376 Bordetella parapertussis 12822 1665707 NP_883622.1 CDS BPP1316 NC_002928.3 1417998 1419137 R Similar to Rhizobium meliloti ABC transporter permease Rb0871 or Smb21205 SWALL:Q92V46 (EMBL:AL603645) (384 aa) fasta scores: E(): 3.7e-57, 45.23% id in 367 aa, and to uncultured bacterium pCosFS1 ElsD SWALL:Q9APR7 (EMBL:AF250767) (384 aa) fasta scores: E(): 2.4e-50, 40.1% id in 374 aa; hypothetical protein complement(1417998..1419137) Bordetella parapertussis 12822 1666196 NP_883623.1 CDS BPP1318 NC_002928.3 1420880 1421893 R Similar to Thiobacillus ferrooxidans hypothetical protein in asrC 5'region SWALL:Q9L9D4 (EMBL:AF173880) (338 aa) fasta scores: E(): 2.4e-41, 46.36% id in 330 aa, and to Rhizobium meliloti hypothetical membrane protein Rb0873 or Smb21207 SWALL:Q92V44 (EMBL:AL603645) (334 aa) fasta scores: E(): 2.3e-38, 44.24% id in 339 aa; HlyD family secretion protein complement(1420880..1421893) Bordetella parapertussis 12822 1666198 NP_883624.1 CDS BPP1319 NC_002928.3 1422012 1422659 D Similar to Pseudomonas fluorescens PhlH SWALL:Q9RF00 (EMBL:AF207529) (223 aa) fasta scores: E(): 5e-29, 43.75% id in 208 aa, and to Rhizobium meliloti transcriptional regulator, TetR family protein Rb0874 or Smb21208 SWALL:Q92V43 (EMBL:AL603645) (225 aa) fasta scores: E(): 6.7e-05, 25.11% id in 227 aa; TetR family transcriptional regulator 1422012..1422659 Bordetella parapertussis 12822 1667942 NP_883625.1 CDS BPP1320 NC_002928.3 1422719 1424479 D hypothetical protein 1422719..1424479 Bordetella parapertussis 12822 1667943 NP_883626.1 CDS BPP1321 NC_002928.3 1424480 1425325 R Similar to Rhizobium meliloti oxidoreductase R02112 or Smc01429 SWALL:Q92NR7 (EMBL:AL591789) (281 aa) fasta scores: E(): 1.2e-47, 54.21% id in 273 aa, and to Agrobacterium tumefaciens aldo/keto reductase Atu2032 or Agr_c_3682 SWALL:AAL43024 (EMBL:AE009154) (281 aa) fasta scores: E(): 1.5e-45, 51.47% id in 272 aa; aldo/keto reductase-family protein complement(1424480..1425325) Bordetella parapertussis 12822 1667944 NP_883627.1 CDS BPP1322 NC_002928.3 1425368 1427236 R ortholog of Bordetella pertussis (BX470248) BP2158; sigma-54-dependent transcriptional regulator complement(1425368..1427236) Bordetella parapertussis 12822 1667945 NP_883628.1 CDS acoD NC_002928.3 1427431 1429023 D ortholog of Bordetella pertussis (BX470248) BP2157; aldehyde dehydrogenase 1427431..1429023 Bordetella parapertussis 12822 1667946 NP_883629.1 CDS BPP1324 NC_002928.3 1429227 1429877 R ortholog of Bordetella pertussis (BX470248) BP2156; hypothetical protein complement(1429227..1429877) Bordetella parapertussis 12822 1667947 NP_883630.1 CDS BPP1326 NC_002928.3 1430912 1432207 D ortholog of Bordetella pertussis (BX470248) BP2153; hypothetical protein 1430912..1432207 Bordetella parapertussis 12822 1667772 NP_883631.1 CDS BPP1327 NC_002928.3 1432229 1433113 R ortholog of Bordetella pertussis (BX470248) BP2152; lysR family transcriptional regulator complement(1432229..1433113) Bordetella parapertussis 12822 1667773 NP_883632.1 CDS BPP1328 NC_002928.3 1433212 1434087 D ortholog of Bordetella pertussis (BX470248) BP2151; oxidoreductase 1433212..1434087 Bordetella parapertussis 12822 1667774 NP_883633.1 CDS BPP1329 NC_002928.3 1434077 1434433 R ortholog of Bordetella pertussis (BX470248) BP2150; hypothetical protein complement(1434077..1434433) Bordetella parapertussis 12822 1667775 NP_883634.1 CDS BPP1331 NC_002928.3 1435709 1435888 R ortholog of Bordetella pertussis (BX470248) BP2148; hypothetical protein complement(1435709..1435888) Bordetella parapertussis 12822 1667777 NP_883635.1 CDS BPP1332 NC_002928.3 1435986 1436510 D ortholog of Bordetella pertussis (BX470248) BP2147; hypothetical protein 1435986..1436510 Bordetella parapertussis 12822 1667778 NP_883636.1 CDS BPP1333 NC_002928.3 1436521 1437357 R ortholog of Bordetella pertussis (BX470248) BP2146; hypothetical protein complement(1436521..1437357) Bordetella parapertussis 12822 1667779 NP_883637.1 CDS BPP1334 NC_002928.3 1437470 1437841 D ortholog of Bordetella pertussis (BX470248) BP2145; ArsR family transcriptional regulator 1437470..1437841 Bordetella parapertussis 12822 1666279 NP_883638.1 CDS BPP1335 NC_002928.3 1437838 1438389 D ortholog of Bordetella pertussis (BX470248) BP2144; hypothetical protein 1437838..1438389 Bordetella parapertussis 12822 1666280 NP_883639.1 CDS BPP1336 NC_002928.3 1438405 1440096 R ortholog of Bordetella pertussis (BX470248) BP2143; sulfate transporter complement(1438405..1440096) Bordetella parapertussis 12822 1666281 NP_883640.1 CDS BPP1337 NC_002928.3 1440145 1440825 R ortholog of Bordetella pertussis (BX470248) BP2142; GntR family transcriptional regulator complement(1440145..1440825) Bordetella parapertussis 12822 1666282 NP_883641.1 CDS BPP1338 NC_002928.3 1441074 1441532 R ortholog of Bordetella pertussis (BX470248) BP2141; hypothetical protein complement(1441074..1441532) Bordetella parapertussis 12822 1667889 NP_883642.1 CDS BPP1339 NC_002928.3 1441702 1442631 D ortholog of Bordetella pertussis (BX470248) BP2140; hypothetical protein 1441702..1442631 Bordetella parapertussis 12822 1667890 NP_883643.1 CDS BPP1340 NC_002928.3 1442644 1443291 R ortholog of Bordetella pertussis (BX470248) BP2139; lipoprotein complement(1442644..1443291) Bordetella parapertussis 12822 1667891 NP_883644.1 CDS BPP1341 NC_002928.3 1443365 1445176 R ortholog of Bordetella pertussis (BX470248) BP2138; ABC-transporter membrane-spanning ATP-binding component complement(1443365..1445176) Bordetella parapertussis 12822 1667892 NP_883645.1 CDS BPP1342 NC_002928.3 1445260 1445811 R ortholog of Bordetella pertussis (BX470248) BP2136; acetyltransferase complement(1445260..1445811) Bordetella parapertussis 12822 1667893 NP_883646.1 CDS BPP1343 NC_002928.3 1445866 1446060 D Similar to Hordeum vulgare low-temperature induced protein Lt101.2 SWALL:LT02_HORVU (SWALL:Q9ARD5) (54 aa) fasta scores: E(): 0.042, 45.83% id in 48 aa, and to Xylella fastidiosa hypothetical protein Xf0135 SWALL:Q9PH11 (EMBL:AE003867) (64 aa) fasta scores: E(): 4.6e-15, 65.51% id in 58 aa; hypothetical protein 1445866..1446060 Bordetella parapertussis 12822 1667894 NP_883647.1 CDS BPP1344 NC_002928.3 1446079 1446426 R ortholog of Bordetella pertussis (BX470248) BP2134; hypothetical protein complement(1446079..1446426) Bordetella parapertussis 12822 1667895 NP_883648.1 CDS BPP1345 NC_002928.3 1446455 1447894 R ortholog of Bordetella pertussis (BX470248) BP2133; transmembrane efflux protein complement(1446455..1447894) Bordetella parapertussis 12822 1667896 NP_883649.1 CDS BPP1346 NC_002928.3 1447913 1448332 R ortholog of Bordetella pertussis (BX470248) BP2132; hypothetical protein complement(1447913..1448332) Bordetella parapertussis 12822 1665928 NP_883650.1 CDS BPP1347 NC_002928.3 1448483 1449091 D ortholog of Bordetella pertussis (BX470248) BP2131; hypothetical protein 1448483..1449091 Bordetella parapertussis 12822 1665929 NP_883651.1 CDS BPP1348 NC_002928.3 1449104 1449922 D ortholog of Bordetella pertussis (BX470248) BP2130; hypothetical protein 1449104..1449922 Bordetella parapertussis 12822 1665930 NP_883652.1 CDS BPP1349 NC_002928.3 1449874 1450848 R ortholog of Bordetella pertussis (BX470248) BP2129; AraC family transcriptional regulator complement(1449874..1450848) Bordetella parapertussis 12822 1665931 NP_883653.1 CDS BPP1350 NC_002928.3 1450877 1451938 R ortholog of Bordetella pertussis (BX470248) BP2128; hypothetical protein complement(1450877..1451938) Bordetella parapertussis 12822 1665932 NP_883654.1 CDS BPP1351 NC_002928.3 1451935 1454148 R ortholog of Bordetella pertussis (BX470248) BP2127; exported oxidoreductase subunit complement(1451935..1454148) Bordetella parapertussis 12822 1665933 NP_883655.1 CDS BPP1353 NC_002928.3 1454778 1455122 R ortholog of Bordetella pertussis (BX470248) BP2125A; hypothetical protein complement(1454778..1455122) Bordetella parapertussis 12822 1665935 NP_883656.1 CDS BPP1354 NC_002928.3 1455279 1456184 D ortholog of Bordetella pertussis (BX470248) BP2125; lysR family transcriptional regulator 1455279..1456184 Bordetella parapertussis 12822 1665936 NP_883657.1 CDS BPP1355 NC_002928.3 1456235 1457284 D ortholog of Bordetella pertussis (BX470248) BP2124; hypothetical protein 1456235..1457284 Bordetella parapertussis 12822 1667973 NP_883658.1 CDS aroG NC_002928.3 1457292 1458410 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1457292..1458410) Bordetella parapertussis 12822 1667974 NP_883659.1 CDS BPP1357 NC_002928.3 1458532 1459176 R ortholog of Bordetella pertussis (BX470248) BP2122; hypothetical protein complement(1458532..1459176) Bordetella parapertussis 12822 1667975 NP_883660.1 CDS gor NC_002928.3 1459378 1460730 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(1459378..1460730) Bordetella parapertussis 12822 1667976 NP_883661.1 CDS BPP1359 NC_002928.3 1460905 1461201 D ortholog of Bordetella pertussis (BX470248) BP2119; hypothetical protein 1460905..1461201 Bordetella parapertussis 12822 1667977 NP_883662.1 CDS BPP1360 NC_002928.3 1461226 1461603 D Similar to Pseudomonas aeruginosa hypothetical protein Pa3386 SWALL:Q9HYL6 (EMBL:AE004760) (121 aa) fasta scores: E(): 3.1e-22, 52.54% id in 118 aa, and to Photobacterium profundum hypothetical 14.4 kDa protein SWALL:Q93CF8 (EMBL:AF409100) (127 aa) fasta scores: E(): 7.1e-18, 45.16% id in 124 aa; hypothetical protein 1461226..1461603 Bordetella parapertussis 12822 1667978 NP_883663.1 CDS BPP1361 NC_002928.3 1461644 1462339 D Similar to Pseudomonas aeruginosa probable glutathione S-transferase Pa1033 SWALL:Q9I4U1 (EMBL:AE004536) (213 aa) fasta scores: E(): 1.6e-60, 71.42% id in 203 aa, and to Anabaena sp. hypothetical protein All1124 SWALL:Q8YXT7 (EMBL:AP003584) (232 aa) fasta scores: E(): 4.8e-62, 67.25% id in 226 aa; glutathione S-transferase 1461644..1462339 Bordetella parapertussis 12822 1667979 NP_883664.1 CDS BPP1363 NC_002928.3 1463908 1464618 D Similar to Brucella melitensis ribosomal-protein-serine acetyltransferase Bmeii0002 SWALL:Q8YE16 (EMBL:AE009639) (242 aa) fasta scores: E(): 1.2e-49, 58.9% id in 219 aa, and to Rhizobium loti hypothetical protein Mll2986 SWALL:Q98H84 (EMBL:AP003000) (228 aa) fasta scores: E(): 4.3e-49, 56.05% id in 223 aa; GNAT family acetyltransferase 1463908..1464618 Bordetella parapertussis 12822 1667981 NP_883665.1 CDS BPP1364 NC_002928.3 1464721 1465647 R Similar to Pseudomonas aeruginosa hypothetical protein Pa1411 SWALL:Q9I3T3 (EMBL:AE004570) (303 aa) fasta scores: E(): 3.7e-60, 59.67% id in 305 aa, and to Ralstonia solanacearum hypothetical transmembrane protein Rsc0519 or Rs04969 SWALL:Q8Y218 (EMBL:AL646059) (301 aa) fasta scores: E(): 7.5e-54, 55.44% id in 303 aa; integral membrane protein complement(1464721..1465647) Bordetella parapertussis 12822 1665314 NP_883666.1 CDS BPP1365 NC_002928.3 1465650 1465985 R Similar to Pseudomonas aeruginosa hypothetical protein Pa1751 SWALL:Q9I2Y6 (EMBL:AE004601) (125 aa) fasta scores: E(): 3.1e-21, 53.7% id in 108 aa, and to Lactococcus lactis thioredoxin TrxA or Ll1644 SWALL:Q9CF37 (EMBL:AE006395) (104 aa) fasta scores: E(): 0.4, 26.82% id in 82 aa; thioredoxin complement(1465650..1465985) Bordetella parapertussis 12822 1665315 NP_883667.1 CDS amaB NC_002928.3 1466043 1467305 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(1466043..1467305) Bordetella parapertussis 12822 1667806 NP_883668.1 CDS norM NC_002928.3 1467335 1468717 R Similar to Escherichia coli multidrug resistance protein NorM or B1663 SWALL:NORM_ECOLI (SWALL:P37340) (457 aa) fasta scores: E(): 7.9e-41, 33.92% id in 451 aa, and to Rhizobium loti multidrug efflux protein, NorM Mll4906 SWALL:Q98D15 (EMBL:AP003005) (467 aa) fasta scores: E(): 3e-101, 59.1% id in 445 aa; multidrug resistance protein complement(1467335..1468717) Bordetella parapertussis 12822 1667807 NP_883669.1 CDS pckG NC_002928.3 1468905 1470761 D catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 1468905..1470761 Bordetella parapertussis 12822 1667808 NP_883670.1 CDS BPP1369 NC_002928.3 1470822 1471445 D Similar to Caulobacter crescentus hypothetical protein Cc1925 SWALL:Q9A701 (EMBL:AE005866) (209 aa) fasta scores: E(): 2.3e-10, 34.5% id in 200 aa, and to Vibrio cholerae tellurite resistance protein-related protein Vc0813 SWALL:Q9KTS5 (EMBL:AE004166) (192 aa) fasta scores: E(): 2e-09, 29.38% id in 194 aa; hypothetical protein 1470822..1471445 Bordetella parapertussis 12822 1667809 NP_883671.1 CDS BPP1370 NC_002928.3 1471433 1471966 D Similar to Ralstonia solanacearum hypothetical protein Rsc0991 or Rs04301 SWALL:Q8Y0Q2 (EMBL:AL646062) (166 aa) fasta scores: E(): 2.3e-21, 48.14% id in 162 aa, and to Caulobacter crescentus hypothetical protein Cc2489 SWALL:Q9A5G1 (EMBL:AE005918) (191 aa) fasta scores: E(): 5.4e-18, 43.45% id in 168 aa; hypothetical protein 1471433..1471966 Bordetella parapertussis 12822 1667810 NP_883672.1 CDS BPP1371 NC_002928.3 1472116 1472979 R Similar to Rhizobium meliloti hypothetical protein Rb0265 or Smb20275 SWALL:Q92WR4 (EMBL:AL603642) (286 aa) fasta scores: E(): 3.6e-47, 51.31% id in 267 aa, and to Ralstonia solanacearum hypothetical protein Rsc0083 or Rs02257 SWALL:Q8Y397 (EMBL:AL646057) (281 aa) fasta scores: E(): 9e-35, 54.48% id in 279 aa; hypothetical protein complement(1472116..1472979) Bordetella parapertussis 12822 1667811 NP_883673.1 CDS BPP1372 NC_002928.3 1472976 1473938 R Similar to Escherichia coli probable 3-hydroxybutyryl-CoA dehydrogenase PaaH or B1395 SWALL:PAAH_ECOLI (SWALL:P76083) (475 aa) fasta scores: E(): 6.4e-20, 35.21% id in 284 aa, and to Mycobacterium tuberculosis 3-hydroxybutyryl-CoA dehydrogenase FadB3 or Rv1715 or Mtv048.02 or Mt1754 SWALL:O53928 (EMBL:AL022003) (304 aa) fasta scores: E(): 2.3e-29, 38% id in 300 aa; 3-hydroxybutyryl-CoA dehydrogenase complement(1472976..1473938) Bordetella parapertussis 12822 1667701 NP_883674.1 CDS BPP1373 NC_002928.3 1474053 1475054 D Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa1998 SWALL:Q9I2B1 (EMBL:AE004626) (306 aa) fasta scores: E(): 3.7e-25, 32.63% id in 285 aa, and to Rhizobium loti transcriptional regulator Mlr6981 SWALL:Q987N6 (EMBL:AP003010) (299 aa) fasta scores: E(): 5.4e-23, 31.97% id in 294 aa; LysR family transcriptional regulator 1474053..1475054 Bordetella parapertussis 12822 1667702 NP_883675.1 CDS BPP1374 NC_002928.3 1474978 1476270 R Similar to Agrobacterium tumefaciens transmembrane protein DctM SWALL:Q9F7C8 (EMBL:AF282677) (416 aa) fasta scores: E(): 4.9e-61, 43.9% id in 410 aa, and to Pasteurella multocida hypothetical protein Pm1527 SWALL:Q9CKS9 (EMBL:AE006189) (442 aa) fasta scores: E(): 1.2e-58, 39.11% id in 427 aa; hypothetical protein complement(1474978..1476270) Bordetella parapertussis 12822 1667703 NP_883676.1 CDS BPP1375 NC_002928.3 1476263 1476754 R Similar to Rhizobium meliloti hypothetical protein Rb0359 or Smb20373 SWALL:Q92WI0 (EMBL:AL603643) (155 aa) fasta scores: E(): 0.0014, 24.34% id in 152 aa, and to Escherichia coli hypothetical protein YiaM or B3577 SWALL:YIAM_ECOLI (SWALL:P37674) (157 aa) fasta scores: E(): 0.0014, 25.8% id in 155 aa; hypothetical protein complement(1476263..1476754) Bordetella parapertussis 12822 1667704 NP_883677.1 CDS BPP1376 NC_002928.3 1476764 1477795 R Similar to Agrobacterium tumefaciens periplasmatic membrane protein DctP SWALL:Q9F7C9 (EMBL:AF282677) (330 aa) fasta scores: E(): 4.2e-20, 27.19% id in 342 aa, and to Pasteurella multocida DctP or Pm1525 SWALL:Q9CKT1 (EMBL:AE006189) (340 aa) fasta scores: E(): 4.5e-21, 28.78% id in 337 aa; extracellular solute-binding protein complement(1476764..1477795) Bordetella parapertussis 12822 1667705 NP_883678.1 CDS BPP1377 NC_002928.3 1477851 1478810 R Similar to Alcaligenes eutrophus hypothetical 34.2 kDa protein in gbd 5'region SWALL:Q44016 (EMBL:L36817) (324 aa) fasta scores: E(): 6.5e-35, 41% id in 317 aa, and to Yersinia pestis hypothetical protein Ypo2238 SWALL:Q8ZED6 (EMBL:AJ414151) (333 aa) fasta scores: E(): 1.9e-31, 35.64% id in 317 aa; hypothetical protein complement(1477851..1478810) Bordetella parapertussis 12822 1665108 NP_883679.1 CDS BPP1378 NC_002928.3 1478798 1479604 R Similar to Pseudomonas aeruginosa hypothetical protein Pa0550 SWALL:Q9I5Y6 (EMBL:AE004491) (265 aa) fasta scores: E(): 8.6e-34, 46.12% id in 258 aa, and to Ralstonia solanacearum hypothetical protein Rsc0020 or Rs01842 SWALL:Q8Y3G0 (EMBL:AL646057) (262 aa) fasta scores: E(): 1.6e-32, 43.96% id in 257 aa; hypothetical protein complement(1478798..1479604) Bordetella parapertussis 12822 1665109 NP_883680.1 CDS BPP1379 NC_002928.3 1479601 1480497 R Similar to Escherichia coli 2-hydroxy-3-oxopropionate reductase GarR or B3125 SWALL:GARR_ECOLI (SWALL:P23523) (294 aa) fasta scores: E(): 6.9e-20, 33.21% id in 277 aa, and to Pseudomonas aeruginosa probable 3-hydroxyisobutyrate dehydrogenase Pa3312 SWALL:Q9HYT2 (EMBL:AE004753) (296 aa) fasta scores: E(): 8.3e-38, 47.97% id in 296 aa; dehydrogenase complement(1479601..1480497) Bordetella parapertussis 12822 1665110 NP_883681.1 CDS ilvD NC_002928.3 1480494 1482206 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(1480494..1482206) Bordetella parapertussis 12822 1665111 NP_883682.1 CDS BPP1381 NC_002928.3 1482247 1482927 R Similar to Rhizobium loti probable transcriptional regulator Mlr1038 SWALL:Q98LF9 (EMBL:AP002996) (226 aa) fasta scores: E(): 3.8e-22, 39.62% id in 212 aa, and to Pseudomonas aeruginosa probable transcriptional regulator Pa5525 SWALL:Q9HT48 (EMBL:AE004965) (246 aa) fasta scores: E(): 3.7e-17, 35.18% id in 216 aa; GntR family transcriptional regulator complement(1482247..1482927) Bordetella parapertussis 12822 1665112 NP_883683.1 CDS BPP1382 NC_002928.3 1483024 1483710 R Similar to Rhizobium loti probable transcriptional regulator Mlr2114 SWALL:Q98J42 (EMBL:AP002999) (223 aa) fasta scores: E(): 2.2e-26, 45.45% id in 198 aa, and to Agrobacterium rhizogenes Riorf32 protein SWALL:Q9F5G0 (EMBL:AP002086) (217 aa) fasta scores: E(): 2.6e-12, 32.99% id in 197 aa; GntR family transcriptional regulator complement(1483024..1483710) Bordetella parapertussis 12822 1665113 NP_883684.1 CDS ilvD NC_002928.3 1483717 1485459 R catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase complement(1483717..1485459) Bordetella parapertussis 12822 1668119 NP_883685.1 CDS BPP1384 NC_002928.3 1485692 1486696 D Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.7e-46, 45.12% id in 328 aa, and to Rhizobium meliloti hypothetical protein Ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.1e-52, 45.87% id in 327 aa; hypothetical protein 1485692..1486696 Bordetella parapertussis 12822 1668120 NP_883686.1 CDS BPP1386 NC_002928.3 1488366 1489373 R Similar to Brucella melitensis aliphatic sulfonates-binding lipoprotein Bmeii0109 SWALL:Q8YDR6 (EMBL:AE009649) (319 aa) fasta scores: E(): 1.5e-23, 30.09% id in 329 aa, and to Streptomyces coelicolor lipoprotein Sc8g12.22 SWALL:Q9KYY3 (EMBL:AL355753) (340 aa) fasta scores: E(): 3.9e-20, 28.04% id in 328 aa; hypothetical protein complement(1488366..1489373) Bordetella parapertussis 12822 1668122 NP_883687.1 CDS BPP1387 NC_002928.3 1489396 1490217 R Similar to Streptomyces coelicolor ABC-transport protein, ATP-binding component Sc8g12.21 SWALL:Q9KYY4 (EMBL:AL355753) (270 aa) fasta scores: E(): 2.8e-40, 46.79% id in 265 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase Atu0159 or Agr_c_259 SWALL:AAK85980 (EMBL:AE008990) (266 aa) fasta scores: E(): 7.9e-40, 46.56% id in 262 aa; ABC transporter ATP-binding protein complement(1489396..1490217) Bordetella parapertussis 12822 1668123 NP_883688.1 CDS BPP1388 NC_002928.3 1490237 1491004 R Similar to Escherichia coli taurine transport system permease TauC or SsiC or B0367 SWALL:TAUC_ECOLI (SWALL:Q47539) (275 aa) fasta scores: E(): 6.8e-30, 34.48% id in 261 aa, and to Brucella melitensis taurine transport system permease tauc bmeii0107 SWALL:Q8YDR8 (EMBL:AE009649) (246 aa) fasta scores: E(): 4e-36, 46.05% id in 228 aa; permease component of ABC transporter complement(1490237..1491004) Bordetella parapertussis 12822 1667273 NP_883689.1 CDS BPP1389 NC_002928.3 1491104 1491829 D Similar to Deinococcus radiodurans transcriptional regulator, GntR family Dra0211 SWALL:Q9RYU6 (EMBL:AE001863) (279 aa) fasta scores: E(): 1.4e-13, 30.04% id in 233 aa, and to Ralstonia solanacearum DNA-binding transcriptional regulatory transcription regulator protein Rsp0079 or rs05542 SWALL:Q8XTM7 (EMBL:AL646076) (273 aa) fasta scores: E(): 1.3e-14, 31.53% id in 241 aa; GntR family transcriptional regulator 1491104..1491829 Bordetella parapertussis 12822 1664763 NP_883690.1 CDS BPP1390 NC_002928.3 1491837 1492985 D Similar to Streptomyces coelicolor racemase Sce65.16C SWALL:Q9RKF7 (EMBL:AL133236) (361 aa) fasta scores: E(): 4e-21, 32.43% id in 370 aa, and to Agrobacterium tumefaciens hypothetical protein Atu3139 or Agr_l_3340 SWALL:AAL43955 (EMBL:AE009244) (378 aa) fasta scores: E(): 6.4e-26, 32.36% id in 377 aa; mandelate racemase/muconate lactonizing enzyme 1491837..1492985 Bordetella parapertussis 12822 1664764 NP_883691.1 CDS BPP1391 NC_002928.3 1493001 1493921 R Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa2534 SWALL:Q9I0V0 (EMBL:AE004681) (303 aa) fasta scores: E(): 9.5e-55, 50.34% id in 294 aa, and to Rhizobium loti probable transcriptional regulator Mlr1983 SWALL:Q98JE3 (EMBL:AP002998) (297 aa) fasta scores: E(): 5.4e-54, 47.47% id in 297 aa; LysR family transcriptional regulator complement(1493001..1493921) Bordetella parapertussis 12822 1664765 NP_883692.1 CDS BPP1392 NC_002928.3 1494036 1494776 D member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria; short chain dehydrogenase 1494036..1494776 Bordetella parapertussis 12822 1664766 NP_883693.1 CDS BPP1393 NC_002928.3 1494908 1495681 R Similar to Salmonella typhi lipoprotein Sty0979 SWALL:Q8Z804 (EMBL:AL627268) (253 aa) fasta scores: E(): 3.5e-46, 53.3% id in 257 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0277 SWALL:Q9I6L3 (EMBL:AE004465) (252 aa) fasta scores: E(): 2.3e-50, 55.85% id in 256 aa; lipoprotein complement(1494908..1495681) Bordetella parapertussis 12822 1664767 NP_883694.1 CDS BPP1394 NC_002928.3 1495961 1496383 D Similar to Rhizobium loti hypothetical protein Mlr7891 SWALL:Q984Q5 (EMBL:AP003012) (140 aa) fasta scores: E(): 4.5e-33, 64.49% id in 138 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4518 SWALL:Q9HVQ4 (EMBL:AE004865) (141 aa) fasta scores: E(): 1.2e-11, 39.7% id in 136 aa; hypothetical protein 1495961..1496383 Bordetella parapertussis 12822 1665160 NP_883695.1 CDS BPP1395 NC_002928.3 1496505 1497698 D Similar to Ralstonia solanacearum probable multidrug transport transmembrane protein Rsp0429 or Rs00888 SWALL:Q8XSN8 (EMBL:AL646078) (399 aa) fasta scores: E(): 3.8e-84, 60.93% id in 384 aa, and to Rhizobium loti hypothetical protein Mlr8412 SWALL:Q983A8 (EMBL:AP003014) (405 aa) fasta scores: E(): 1e-54, 43.52% id in 386 aa; hypothetical protein 1496505..1497698 Bordetella parapertussis 12822 1665161 NP_883696.1 CDS BPP1396 NC_002928.3 1497705 1498616 R Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa2469 SWALL:Q9I113 (EMBL:AE004674) (304 aa) fasta scores: E(): 2.3e-38, 38.25% id in 298 aa, and to Salmonella typhimurium, and Salmonella typhi transcriptional regulator, LysR family Stm2180 or Sty2410 SWALL:Q8XG81 (EMBL:AE008797) (302 aa) fasta scores: E(): 1.2e-33, 37.74% id in 302 aa; LysR family transcriptional regulator complement(1497705..1498616) Bordetella parapertussis 12822 1665162 NP_883697.1 CDS BPP1397 NC_002928.3 1498743 1500329 D Similar to Burkholderia caryophylli phosphonate monoester hydrolase PehA SWALL:Q45087 (EMBL:U44852) (514 aa) fasta scores: E(): 2.1e-13, 28.98% id in 552 aa, and to Pseudomonas aeruginosa probable sulfatase Pa2333 SWALL:Q9I1E5 (EMBL:AE004659) (538 aa) fasta scores: E(): 1.7e-09, 31.65% id in 537 aa; sulfatase 1498743..1500329 Bordetella parapertussis 12822 1665163 NP_883698.1 CDS BPP1398 NC_002928.3 1500371 1501348 D Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 9.3e-35, 39.75% id in 322 aa, and to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 4.5e-37, 38.67% id in 331 aa; hypothetical protein 1500371..1501348 Bordetella parapertussis 12822 1665164 NP_883699.1 CDS BPP1399 NC_002928.3 1501369 1501881 R no significant database matches; hypothetical protein complement(1501369..1501881) Bordetella parapertussis 12822 1666870 NP_883700.1 CDS BPP1400 NC_002928.3 1502380 1503885 D Similar to Ralstonia solanacearum probable transmembrane protein Rsc0793 or Rs05044 SWALL:Q8Y197 (EMBL:AL646061) (500 aa) fasta scores: E(): 4.1e-134, 72.2% id in 500 aa, and to Agrobacterium tumefaciens hypothetical protein Atu0118 or Agr_c_184 SWALL:Q8UJ20 (EMBL:AE008986) (501 aa) fasta scores: E(): 3.6e-122, 65.46% id in 501 aa; hypothetical protein 1502380..1503885 Bordetella parapertussis 12822 1666871 NP_883701.1 CDS BPP1401 NC_002928.3 1503983 1504447 R Similar to Rhizobium loti probable transcriptional regulator Mlr1478 SWALL:Q98KH0 (EMBL:AP002997) (148 aa) fasta scores: E(): 1.8e-17, 47.79% id in 136 aa, and to Brucella melitensis transcriptional regulator, MarR family Bmeii0520 SWALL:Q8YCK8 (EMBL:AE009688) (145 aa) fasta scores: E(): 8.8e-16, 49.58% id in 121 aa; hypothetical protein complement(1503983..1504447) Bordetella parapertussis 12822 1666872 NP_883702.1 CDS stbB NC_002928.3 1504557 1504982 R Similar to Pseudomonas syringae plasmid stability protein StbB SWALL:STBB_PSESM (SWALL:Q52562) (139 aa) fasta scores: E(): 1.3e-20, 46.76% id in 139 aa, and to Rhizobium sp. plasmid stability protein Y4jK SWALL:Y4JK_RHISN (SWALL:P55511) (140 aa) fasta scores: E(): 2.9e-21, 48.57% id in 140 aa; plasmid stability protein complement(1504557..1504982) Bordetella parapertussis 12822 1666873 NP_883703.1 CDS stbC NC_002928.3 1504979 1505218 R Similar to Pseudomonas syringae plasmid stability protein StbC SWALL:STBC_PSESM (SWALL:Q52561) (103 aa) fasta scores: E(): 8.2e-12, 51.76% id in 85 aa, and to Rhizobium sp. plasmid stability protein Y4jJ SWALL:Y4JJ_RHISN (SWALL:P55510) (85 aa) fasta scores: E(): 1.5e-13, 60% id in 85 aa; plasmid stability protein complement(1504979..1505218) Bordetella parapertussis 12822 1666874 NP_883704.1 CDS BPP1404 NC_002928.3 1505292 1506134 R Similar to Xylella fastidiosa transcriptional regulator Xf1254 SWALL:Q9PDX5 (EMBL:AE003959) (280 aa) fasta scores: E(): 5.5e-44, 45.98% id in 274 aa, and to Agrobacterium tumefaciens transcriptional regulator, AraC family Atu4575 or Agr_l_593 SWALL:Q8U779 (EMBL:AE009385) (321 aa) fasta scores: E(): 4.1e-15, 31.37% id in 290 aa; AraC family transcriptional regulator complement(1505292..1506134) Bordetella parapertussis 12822 1666875 NP_883705.1 CDS mip NC_002928.3 1506272 1506817 D Similar to Legionella pneumophila Mip SWALL:Q53427 (EMBL:S71704) (184 aa) fasta scores: E(): 1.7e-22, 44.57% id in 175 aa, and to Anabaena sp. hypothetical protein Alr7524 SWALL:Q8ZSI6 (EMBL:AP003602) (193 aa) fasta scores: E(): 6.8e-10, 30.06% id in 163 aa; hypothetical protein 1506272..1506817 Bordetella parapertussis 12822 1667368 NP_883706.1 CDS BPP1406 NC_002928.3 1506876 1507388 D Similar to Corynebacterium glutamicum thiol-disulfide isomerase and thioredoxins cgl0914 SWALL:BAB98307 (EMBL:AP005276) (160 aa) fasta scores: E(): 1.4e-28, 50.64% id in 154 aa; hypothetical protein 1506876..1507388 Bordetella parapertussis 12822 1667369 NP_883707.1 CDS BPP1407 NC_002928.3 1507415 1507702 D Similar to Streptomyces coelicolor hypothetical 7.8 kDa protein Sc10f4.38C SWALL:Q9F3M3 (EMBL:AL450350) (69 aa) fasta scores: E(): 5.2e-13, 57.81% id in 64 aa, and to Streptomyces coelicolor hypothetical 9.9 kDa protein Scf43a.35C SWALL:Q9XA80 (EMBL:AL096837) (88 aa) fasta scores: E(): 0.00075, 29.07% id in 86 aa; hypothetical protein 1507415..1507702 Bordetella parapertussis 12822 1667370 NP_883708.1 CDS BPP1408 NC_002928.3 1507699 1508259 D Similar to Streptomyces coelicolor conserved hypothetical protein Sc10f4.37C SWALL:Q9F3M4 (EMBL:AL450350) (178 aa) fasta scores: E(): 7e-24, 44.25% id in 174 aa, and to Aeropyrum pernix hypothetical protein Ape2246 SWALL:Q9Y9P2 (EMBL:AP000064) (188 aa) fasta scores: E(): 8.2e-19, 45.16% id in 155 aa; hypothetical protein 1507699..1508259 Bordetella parapertussis 12822 1667371 NP_883709.1 CDS BPP1409 NC_002928.3 1508337 1509383 D Similar to Zymomonas mobilis hypothetical 36.5 kDa protein SWALL:Q9RH20 (EMBL:AF088897) (322 aa) fasta scores: E(): 2.1e-70, 57.84% id in 306 aa, and to Mycobacterium tuberculosis hypothetical protein Rv0799c or Mtcy07h7a.10 or Mtci429b.01 or Mt0820 SWALL:O07180 (EMBL:Z96797) (335 aa) fasta scores: E(): 6.9e-70, 56.56% id in 343 aa; hypothetical protein 1508337..1509383 Bordetella parapertussis 12822 1667372 NP_883710.1 CDS linM18 NC_002928.3 1509380 1510183 D Similar to Brevibacterium linens bacteriocin linocin M18 LinM18 SWALL:Q45296 (EMBL:X93588) (266 aa) fasta scores: E(): 9.5e-54, 56.6% id in 265 aa, and to Mycobacterium tuberculosis 29 kDa antigen cfp29 SWALL:O07812 (EMBL:Y12820) (265 aa) fasta scores: E(): 2e-59, 62.5% id in 264 aa; bacteriocin 1509380..1510183 Bordetella parapertussis 12822 1667373 NP_883711.1 CDS BPP1411 NC_002928.3 1510238 1511536 R Similar to Agrobacterium tumefaciens transmembrane protein DctM SWALL:Q9F7C8 (EMBL:AF282677) (416 aa) fasta scores: E(): 6e-53, 40.67% id in 418 aa, and to Rhizobium meliloti hypothetical protein Ra0081 or Sma0151 SWALL:Q930W3 (EMBL:AE007202) (866 aa) fasta scores: E(): 7.9e-52, 41.62% id in 382 aa; hypothetical protein complement(1510238..1511536) Bordetella parapertussis 12822 1667374 NP_883712.1 CDS BPP1412 NC_002928.3 1511540 1512061 R Similar to Klebsiella pneumoniae small integral C4-dicarboxylate membrane transport protein DctQ dctQ SWALL:Q9RN75 (EMBL:AF186091) (136 aa) fasta scores: E(): 1.3e-05, 26.89% id in 119 aa; hypothetical protein complement(1511540..1512061) Bordetella parapertussis 12822 1667375 NP_883713.1 CDS BPP1413 NC_002928.3 1512103 1513110 R Similar to Rhizobium meliloti periplasmic binding protein R01699 or smc00271 SWALL:Q92PN7 (EMBL:AL591788) (325 aa) fasta scores: E(): 1.4e-16, 29.2% id in 315 aa, and to Pasteurella multocida hypothetical protein Pm1252 SWALL:Q9CLH9 (EMBL:AE006164) (328 aa) fasta scores: E(): 4.7e-18, 28.66% id in 314 aa; extracellular solute-binding protein complement(1512103..1513110) Bordetella parapertussis 12822 1667391 NP_883714.1 CDS BPP1414 NC_002928.3 1513135 1513761 R Similar to Escherichia coli isochorismatase EntB or EntG or B0595 or Z0737 or Ecs0634 SWALL:ENTB_ECOLI (SWALL:P15048) (285 aa) fasta scores: E(): 2.2e-06, 30.15% id in 189 aa, and to Arthrobacter sp N-carbamoylsarcosine amidase SWALL:CSH_ARTSP (SWALL:P32400) (264 aa) fasta scores: E(): 1.8e-12, 31.86% id in 204 aa; isochorismatase complement(1513135..1513761) Bordetella parapertussis 12822 1667392 NP_883715.1 CDS BPP1415 NC_002928.3 1514336 1515157 R ortholog of Bordetella pertussis (BX470248) BP2117; transcriptional regulator complement(1514336..1515157) Bordetella parapertussis 12822 1667393 NP_883716.1 CDS BPP1416 NC_002928.3 1515196 1516167 D ortholog of Bordetella pertussis (BX470248) BP2116; hypothetical protein 1515196..1516167 Bordetella parapertussis 12822 1667394 NP_883717.1 CDS BPP1417 NC_002928.3 1516171 1517025 D ortholog of Bordetella pertussis (BX470248) BP2115; hypothetical protein 1516171..1517025 Bordetella parapertussis 12822 1667395 NP_883718.1 CDS BPP1418 NC_002928.3 1517044 1517862 D ortholog of Bordetella pertussis (BX470248) BP2114; hydrolase 1517044..1517862 Bordetella parapertussis 12822 1667396 NP_883719.1 CDS BPP1419 NC_002928.3 1517882 1519342 D ortholog of Bordetella pertussis (BX470248) BP2113; amidase 1517882..1519342 Bordetella parapertussis 12822 1664703 NP_883720.1 CDS BPP1420 NC_002928.3 1519345 1520133 D ortholog of Bordetella pertussis (BX470248) BP2112; oxidoreductase 1519345..1520133 Bordetella parapertussis 12822 1664704 NP_883721.1 CDS BPP1421 NC_002928.3 1520419 1521924 R ortholog of Bordetella pertussis (BX470248) BP2111; hypothetical protein complement(1520419..1521924) Bordetella parapertussis 12822 1664705 NP_883722.1 CDS BPP1422 NC_002928.3 1521966 1522748 R ortholog of Bordetella pertussis (BX470248) BP2110; exodeoxyribonuclease III complement(1521966..1522748) Bordetella parapertussis 12822 1664706 NP_883723.1 CDS BPP1423 NC_002928.3 1522818 1523264 R ortholog of Bordetella pertussis (BX470248) BP2109; hypothetical protein complement(1522818..1523264) Bordetella parapertussis 12822 1665996 NP_883724.1 CDS BPP1424 NC_002928.3 1523261 1524487 R ortholog of Bordetella pertussis (BX470248) BP2108; hypothetical protein complement(1523261..1524487) Bordetella parapertussis 12822 1665997 NP_883725.1 CDS BPP1425 NC_002928.3 1524480 1524884 R ortholog of Bordetella pertussis (BX470248) BP2107; hypothetical protein complement(1524480..1524884) Bordetella parapertussis 12822 1665998 NP_883726.1 CDS BPP1426 NC_002928.3 1525044 1525346 D ortholog of Bordetella pertussis (BX470248) BP2106; hypothetical protein 1525044..1525346 Bordetella parapertussis 12822 1665999 NP_883727.1 CDS BPP1427 NC_002928.3 1525343 1526113 R ortholog of Bordetella pertussis (BX470248) BP1362; amino-acid ABC transporter ATP-binding protein complement(1525343..1526113) Bordetella parapertussis 12822 1666000 NP_883728.1 CDS BPP1428 NC_002928.3 1526110 1526790 R ortholog of Bordetella pertussis (BX470248) BP1363; amino-acid ABC transporter, permease complement(1526110..1526790) Bordetella parapertussis 12822 1666001 NP_883729.1 CDS BPP1429 NC_002928.3 1526857 1527645 R ortholog of Bordetella pertussis (BX470248) BP1364; amino-acid ABC transporter, periplasmic amino acid-binding protein complement(1526857..1527645) Bordetella parapertussis 12822 1666818 NP_883730.1 CDS BPP1430 NC_002928.3 1527888 1530212 R ortholog of Bordetella pertussis (BX470248) BP2722; membrane transport ATPase complement(1527888..1530212) Bordetella parapertussis 12822 1666819 NP_883731.1 CDS BPP1431 NC_002928.3 1530295 1530729 D ortholog of Bordetella pertussis (BX470248) BP2723; MerR family transcriptional regulator 1530295..1530729 Bordetella parapertussis 12822 1666820 NP_883732.1 CDS BPP1432 NC_002928.3 1530832 1531416 D ortholog of Bordetella pertussis (BX470248) BP2703; hypothetical protein 1530832..1531416 Bordetella parapertussis 12822 1665340 NP_883733.1 CDS argH NC_002928.3 1531486 1532994 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(1531486..1532994) Bordetella parapertussis 12822 1665341 NP_883734.1 CDS BPP1434 NC_002928.3 1533015 1534361 D ortholog of Bordetella pertussis (BX470248) BP2701; membrane transport protein 1533015..1534361 Bordetella parapertussis 12822 1665342 NP_883735.1 CDS nadE NC_002928.3 1534400 1536034 D NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1534400..1536034 Bordetella parapertussis 12822 1665343 NP_883736.1 CDS glnB NC_002928.3 1536078 1536416 D ortholog of Bordetella pertussis (BX470248) BP2699; nitrogen regulatory protein 1536078..1536416 Bordetella parapertussis 12822 1665344 NP_883737.1 CDS BPP1437 NC_002928.3 1536441 1536815 R ortholog of Bordetella pertussis (BX470248) BP2698; endonuclease complement(1536441..1536815) Bordetella parapertussis 12822 1667648 NP_883738.1 CDS BPP1438 NC_002928.3 1536901 1537281 D ortholog of Bordetella pertussis (BX470248) BP2697; heat shock protein 1536901..1537281 Bordetella parapertussis 12822 1667649 NP_883739.1 CDS BPP1439 NC_002928.3 1537399 1539336 D ortholog of Bordetella pertussis (BX470248) BP2696; phosphatase 1537399..1539336 Bordetella parapertussis 12822 1667650 NP_883740.1 CDS BPP1440 NC_002928.3 1539430 1539975 R ortholog of Bordetella pertussis (BX470248) BP2695; hypothetical protein complement(1539430..1539975) Bordetella parapertussis 12822 1667651 NP_883741.1 CDS BPP1441 NC_002928.3 1540050 1540931 R ortholog of Bordetella pertussis (BX470248) BP2694; LysR family transcriptional regulator complement(1540050..1540931) Bordetella parapertussis 12822 1666688 NP_883742.1 CDS BPP1442 NC_002928.3 1541039 1542667 D ortholog of Bordetella pertussis (BX470248) BP2693; gamma-glutamyltranspeptidase 1541039..1542667 Bordetella parapertussis 12822 1666689 NP_883743.1 CDS BPP1443 NC_002928.3 1542709 1544226 D ortholog of Bordetella pertussis (BX470248) BP2692; ABC-transport protein, solute-binding component 1542709..1544226 Bordetella parapertussis 12822 1666690 NP_883744.1 CDS BPP1444 NC_002928.3 1544302 1545246 D ortholog of Bordetella pertussis (BX470248) BP2691; ABC-transport protein, inner membrane component 1544302..1545246 Bordetella parapertussis 12822 1666691 NP_883745.1 CDS BPP1445 NC_002928.3 1545243 1546118 D ortholog of Bordetella pertussis (BX470248) BP2690; ABC transporter inner membrane protein 1545243..1546118 Bordetella parapertussis 12822 1666692 NP_883746.1 CDS BPP1447 NC_002928.3 1547981 1548625 R Similar to Caulobacter crescentus efflux protein, LysE family Cc0456 SWALL:Q9AAY6 (EMBL:AE005719) (208 aa) fasta scores: E(): 6.7e-38, 56.54% id in 214 aa, and to Zymomonas mobilis hypothetical 17.5 kDa protein Zm10orf7 SWALL:Q9XBR8 (EMBL:AF157493) (158 aa) fasta scores: E(): 1.1e-22, 49.06% id in 161 aa; LysE family efflux protein complement(1547981..1548625) Bordetella parapertussis 12822 1666022 NP_883747.1 CDS BPP1448 NC_002928.3 1548717 1549253 D Similar to Ralstonia solanacearum hypothetical protein Rsc0785 or Rs05053 SWALL:Q8Y1A5 (EMBL:AL646061) (182 aa) fasta scores: E(): 1.5e-37, 55.23% id in 172 aa, and to Yersinia pestis hypothetical protein Ypo1065 SWALL:Q8ZH46 (EMBL:AJ414146) (182 aa) fasta scores: E(): 1.1e-30, 46.06% id in 178 aa; hypothetical protein 1548717..1549253 Bordetella parapertussis 12822 1665847 NP_883748.1 CDS BPP1450 NC_002928.3 1550645 1551217 R ortholog of Bordetella pertussis (BX470248) BP0981; hypothetical protein complement(1550645..1551217) Bordetella parapertussis 12822 1665849 NP_883749.1 CDS BPP1451 NC_002928.3 1551277 1552008 D ortholog of Bordetella pertussis (BX470248) BP0982; RNA pseudouridylate synthase 1551277..1552008 Bordetella parapertussis 12822 1665850 NP_883750.1 CDS BPP1452 NC_002928.3 1552060 1552977 R ortholog of Bordetella pertussis (BX470248) BP0983; LysR family transcriptional regulator complement(1552060..1552977) Bordetella parapertussis 12822 1665851 NP_883751.1 CDS acrA NC_002928.3 1553228 1554418 D ortholog of Bordetella pertussis (BX470248) BP0984; acriflavine resistance protein a precursor 1553228..1554418 Bordetella parapertussis 12822 1664641 NP_883752.1 CDS acrB NC_002928.3 1554431 1557610 D ortholog of Bordetella pertussis (BX470248) BP0985; acriflavine resistance protein B 1554431..1557610 Bordetella parapertussis 12822 1664642 NP_883753.1 CDS cusC NC_002928.3 1557607 1559073 D ortholog of Bordetella pertussis (BX470248) BP0986; outer membrane lipoprotein 1557607..1559073 Bordetella parapertussis 12822 1664643 NP_883754.1 CDS BPP1456 NC_002928.3 1559143 1559394 R ortholog of Bordetella pertussis (BX470248) BP0987; hypothetical protein complement(1559143..1559394) Bordetella parapertussis 12822 1664644 NP_883755.1 CDS BPP1457 NC_002928.3 1559540 1560190 R ortholog of Bordetella pertussis (BX470248) BP0988; hypothetical protein complement(1559540..1560190) Bordetella parapertussis 12822 1665615 NP_883756.1 CDS prlC NC_002928.3 1560325 1562439 R ortholog of Bordetella pertussis (BX470248) BP0989; oligopeptidase A complement(1560325..1562439) Bordetella parapertussis 12822 1665616 NP_883757.1 CDS folD NC_002928.3 1562515 1563366 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1562515..1563366) Bordetella parapertussis 12822 1665617 NP_883758.1 CDS BPP1460 NC_002928.3 1563363 1563989 R ortholog of Bordetella pertussis (BX470248) BP0991; two-component response regulator complement(1563363..1563989) Bordetella parapertussis 12822 1665618 NP_883759.1 CDS BPP1461 NC_002928.3 1563986 1565740 R ortholog of Bordetella pertussis (BX470248) BP0992; tw-component sensor kinase complement(1563986..1565740) Bordetella parapertussis 12822 1664944 NP_883760.1 CDS aceE NC_002928.3 1566033 1568738 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 1566033..1568738 Bordetella parapertussis 12822 1664945 NP_883761.1 CDS aceF NC_002928.3 1568751 1570373 D Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; dihydrolipoamide acetyltransferase 1568751..1570373 Bordetella parapertussis 12822 1665553 NP_883762.1 CDS lpdA NC_002928.3 1570386 1572161 D ortholog of Bordetella pertussis (BX470248) BP0995; dihydrolipoamide dehydrogenase 1570386..1572161 Bordetella parapertussis 12822 1665554 NP_883763.1 CDS flaA NC_002928.3 1572384 1573562 R structural flagella protein; flagellin complement(1572384..1573562) Bordetella parapertussis 12822 1665555 NP_883764.1 CDS flhD NC_002928.3 1575124 1575447 D with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 1575124..1575447 Bordetella parapertussis 12822 1665800 NP_883765.1 CDS flhC NC_002928.3 1575482 1576042 D With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 1575482..1576042 Bordetella parapertussis 12822 1665801 NP_883766.1 CDS motA NC_002928.3 1576163 1577038 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 1576163..1577038 Bordetella parapertussis 12822 1665802 NP_883767.1 CDS motB NC_002928.3 1577051 1577998 D with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 1577051..1577998 Bordetella parapertussis 12822 1665803 NP_883768.1 CDS cheY NC_002928.3 1578013 1578393 D ortholog of Bordetella pertussis (BX470248) BP1026; chemotaxis protein CheY 1578013..1578393 Bordetella parapertussis 12822 1665804 NP_883769.1 CDS cheA NC_002928.3 1578420 1580477 D ortholog of Bordetella pertussis (BX470248) BP1028; chemotaxis protein CheA 1578420..1580477 Bordetella parapertussis 12822 1665148 NP_883770.1 CDS cheW NC_002928.3 1580474 1580992 D ortholog of Bordetella pertussis (BX470248) BP1029; chemotaxis protein CheW 1580474..1580992 Bordetella parapertussis 12822 1665149 NP_883771.1 CDS tsr NC_002928.3 1581066 1582772 D ortholog of Bordetella pertussis (BX470248) BP1030; methyl-accepting chemotaxis protein I 1581066..1582772 Bordetella parapertussis 12822 1665150 NP_883772.1 CDS cheR NC_002928.3 1582781 1583641 D ortholog of Bordetella pertussis (BX470248) BP1031; chemotaxis protein methyltransferase 1582781..1583641 Bordetella parapertussis 12822 1665151 NP_883773.1 CDS cheB NC_002928.3 1583638 1584690 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1583638..1584690 Bordetella parapertussis 12822 1666114 NP_883774.1 CDS cheY NC_002928.3 1584743 1585132 D ortholog of Bordetella pertussis (BX470248) BP1033; chemotaxis protein CheY 1584743..1585132 Bordetella parapertussis 12822 1666115 NP_883775.1 CDS cheZ NC_002928.3 1585141 1585773 D cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 1585141..1585773 Bordetella parapertussis 12822 1666116 NP_883776.1 CDS flhB NC_002928.3 1586000 1587154 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1586000..1587154 Bordetella parapertussis 12822 1666459 NP_883777.1 CDS BPP1482 NC_002928.3 1591648 1592130 R ortholog of Bordetella pertussis (BX470248) BP1370; hypothetical protein complement(1591648..1592130) Bordetella parapertussis 12822 1666462 NP_883778.1 CDS flgM NC_002928.3 1592147 1592437 R ortholog of Bordetella pertussis (BX470248) BP1371; negative regulator of flagellin synthesis complement(1592147..1592437) Bordetella parapertussis 12822 1666463 NP_883779.2 CDS flgA NC_002928.3 1592564 1593274 R required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA complement(1592564..1593274) Bordetella parapertussis 12822 1666505 NP_883780.1 CDS flgB NC_002928.3 1593458 1593865 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1593458..1593865 Bordetella parapertussis 12822 1666506 NP_883781.1 CDS flgC NC_002928.3 1593878 1594297 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1593878..1594297 Bordetella parapertussis 12822 1666507 NP_883782.1 CDS flgD NC_002928.3 1594345 1595049 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 1594345..1595049 Bordetella parapertussis 12822 1666508 NP_883783.1 CDS flgE NC_002928.3 1595115 1596536 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1595115..1596536 Bordetella parapertussis 12822 1666509 NP_883784.1 CDS flgF NC_002928.3 1596575 1597339 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1596575..1597339 Bordetella parapertussis 12822 1666510 NP_883785.1 CDS flgH NC_002928.3 1598165 1598857 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar basal body L-ring protein 1598165..1598857 Bordetella parapertussis 12822 1666783 NP_883786.1 CDS flgI NC_002928.3 1598860 1599993 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1598860..1599993 Bordetella parapertussis 12822 1666784 NP_883787.1 CDS flgJ NC_002928.3 1600011 1601030 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1600011..1601030 Bordetella parapertussis 12822 1666785 NP_883788.1 CDS flgK NC_002928.3 1601100 1602746 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1601100..1602746 Bordetella parapertussis 12822 1666786 NP_883789.1 CDS flgL NC_002928.3 1602780 1604312 D With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 1602780..1604312 Bordetella parapertussis 12822 1666787 NP_883790.1 CDS tsr NC_002928.3 1604340 1606007 D ortholog of Bordetella pertussis (BX470248) BP1384; methyl-accepting chemotaxis protein I 1604340..1606007 Bordetella parapertussis 12822 1666734 NP_883791.1 CDS fliQ NC_002928.3 1608749 1609018 R ortholog of Bordetella pertussis (BX470248) BP1390; flagellar biosynthetic protein FliQ complement(1608749..1609018) Bordetella parapertussis 12822 1666737 NP_883792.1 CDS fliP NC_002928.3 1609035 1609835 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(1609035..1609835) Bordetella parapertussis 12822 1667982 NP_883793.1 CDS fliO NC_002928.3 1609838 1610179 R ortholog of Bordetella pertussis (BX470248) BP1392; flagellar protein FliO complement(1609838..1610179) Bordetella parapertussis 12822 1667983 NP_883794.1 CDS fliM NC_002928.3 1610701 1611711 R ortholog of Bordetella pertussis (BX470248) BP1394; flagellar motor switch protein FliM complement(1610701..1611711) Bordetella parapertussis 12822 1667985 NP_883795.1 CDS fliL NC_002928.3 1611714 1612286 R ortholog of Bordetella pertussis (BX470248) BP1395; flagellar protein FliL complement(1611714..1612286) Bordetella parapertussis 12822 1665783 NP_883796.1 CDS fliK NC_002928.3 1612428 1613744 R ortholog of Bordetella pertussis (BX470248) BP1398; flagellar hook-length control protein complement(1612428..1613744) Bordetella parapertussis 12822 1665784 NP_883797.1 CDS fliJ NC_002928.3 1613750 1614184 R ortholog of Bordetella pertussis (BX470248) BP1399; flagellar protein FliJ complement(1613750..1614184) Bordetella parapertussis 12822 1665785 NP_883798.1 CDS fliI NC_002928.3 1614177 1615652 R ortholog of Bordetella pertussis (BX470248) BP1400; flagellum-specific ATP synthase FliI complement(1614177..1615652) Bordetella parapertussis 12822 1665786 NP_883799.1 CDS fliH NC_002928.3 1615649 1616404 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(1615649..1616404) Bordetella parapertussis 12822 1665696 NP_883800.1 CDS fliG NC_002928.3 1616397 1617407 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(1616397..1617407) Bordetella parapertussis 12822 1665697 NP_883801.1 CDS fliE NC_002928.3 1619386 1619718 D ortholog of Bordetella pertussis (BX470248) BP1404; flagellar hook-basal body complex protein FliE 1619386..1619718 Bordetella parapertussis 12822 1665699 NP_883802.1 CDS BPP1512 NC_002928.3 1619732 1620127 R ortholog of Bordetella pertussis (BX470248) BP1405; hypothetical protein complement(1619732..1620127) Bordetella parapertussis 12822 1665700 NP_883803.1 CDS BPP1513 NC_002928.3 1620137 1620451 R ortholog of Bordetella pertussis (BX470248) BP1406; flagellar protein complement(1620137..1620451) Bordetella parapertussis 12822 1666270 NP_883804.1 CDS BPP1514 NC_002928.3 1620448 1621719 R ortholog of Bordetella pertussis (BX470248) BP1407; hypothetical protein complement(1620448..1621719) Bordetella parapertussis 12822 1666271 NP_883805.1 CDS fliT NC_002928.3 1621716 1622096 R ortholog of Bordetella pertussis (BX470248) BP1408; flagellar protein FliT complement(1621716..1622096) Bordetella parapertussis 12822 1666272 NP_883806.1 CDS fliS NC_002928.3 1622114 1622542 R ortholog of Bordetella pertussis (BX470248) BP1409; flagellar protein FliS complement(1622114..1622542) Bordetella parapertussis 12822 1666273 NP_883807.1 CDS fliD NC_002928.3 1622550 1623923 R ortholog of Bordetella pertussis (BX470248) BP1410; flagellar hook-associated protein 2 complement(1622550..1623923) Bordetella parapertussis 12822 1666274 NP_883808.1 CDS BPP1518 NC_002928.3 1624064 1624426 R ortholog of Bordetella pertussis (BX470248) BP1411; flagellar protein complement(1624064..1624426) Bordetella parapertussis 12822 1666275 NP_883809.1 CDS folC NC_002928.3 1624916 1626223 D ortholog of Bordetella pertussis (BX470248) BP1412; bifunctional folylpolyglutamate synthase/dihydrofolate synthase FolC 1624916..1626223 Bordetella parapertussis 12822 1666276 NP_883810.1 CDS BPP1520 NC_002928.3 1626284 1627114 D ortholog of Bordetella pertussis (BX470248) BP1413; hypothetical protein 1626284..1627114 Bordetella parapertussis 12822 1666277 NP_883811.1 CDS cvpA NC_002928.3 1627111 1627599 D ortholog of Bordetella pertussis (BX470248) BP1414; colicin V production protein 1627111..1627599 Bordetella parapertussis 12822 1665234 NP_883812.1 CDS purF NC_002928.3 1627641 1629161 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1627641..1629161 Bordetella parapertussis 12822 1665235 NP_883813.1 CDS dsbB NC_002928.3 1629205 1629681 R ortholog of Bordetella pertussis (BX470248) BP1416; disulfide bond formation protein B complement(1629205..1629681) Bordetella parapertussis 12822 1665236 NP_883814.1 CDS marC NC_002928.3 1629732 1630445 R ortholog of Bordetella pertussis (BX470248) BP1416A; multiple antibiotic resistance protein complement(1629732..1630445) Bordetella parapertussis 12822 1665237 NP_883815.1 CDS glnD NC_002928.3 1630484 1633081 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(1630484..1633081) Bordetella parapertussis 12822 1665238 NP_883816.1 CDS map NC_002928.3 1633111 1633932 R ortholog of Bordetella pertussis (BX470248) BP1418; methionine aminopeptidase complement(1633111..1633932) Bordetella parapertussis 12822 1668302 NP_883817.1 CDS rpsB NC_002928.3 1634654 1635403 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1634654..1635403 Bordetella parapertussis 12822 1668303 NP_883818.2 CDS tsf NC_002928.3 1635587 1636465 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1635587..1636465 Bordetella parapertussis 12822 1668304 NP_883819.2 CDS pyrH NC_002928.3 1636563 1637279 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1636563..1637279 Bordetella parapertussis 12822 1668305 NP_883820.1 CDS frr NC_002928.3 1637294 1637854 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1637294..1637854 Bordetella parapertussis 12822 1665145 NP_883821.1 CDS uppS NC_002928.3 1637892 1638785 D catalyzes the formation of UDP pyrophosphate from isopentenyl pyrophosphate; UDP pyrophosphate synthase 1637892..1638785 Bordetella parapertussis 12822 1665146 NP_883822.1 CDS cdsA NC_002928.3 1638805 1639662 D ortholog of Bordetella pertussis (BX470248) BP1424; phosphatidate cytidylyltransferase 1638805..1639662 Bordetella parapertussis 12822 1665147 NP_883823.1 CDS dxr NC_002928.3 1639659 1640858 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1639659..1640858 Bordetella parapertussis 12822 1667192 NP_883824.1 CDS BPP1534 NC_002928.3 1640898 1642232 D ortholog of Bordetella pertussis (BX470248) BP1426; hypothetical protein 1640898..1642232 Bordetella parapertussis 12822 1667193 NP_883825.1 CDS BPP1535 NC_002928.3 1642285 1644621 D ortholog of Bordetella pertussis (BX470248) BP1427; surface antigen 1642285..1644621 Bordetella parapertussis 12822 1667194 NP_883826.1 CDS BPP1536 NC_002928.3 1644699 1645310 D ortholog of Bordetella pertussis (BX470248) BP1428; outer membrane protein 1644699..1645310 Bordetella parapertussis 12822 1667195 NP_883827.1 CDS lpxD NC_002928.3 1645319 1646410 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1645319..1646410 Bordetella parapertussis 12822 1667196 NP_883828.1 CDS fabZ NC_002928.3 1646434 1646937 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1646434..1646937 Bordetella parapertussis 12822 1666655 NP_883829.1 CDS lpxA NC_002928.3 1646938 1647732 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1646938..1647732 Bordetella parapertussis 12822 1666656 NP_883830.1 CDS lpxB NC_002928.3 1647729 1648910 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1647729..1648910 Bordetella parapertussis 12822 1668069 NP_883831.1 CDS rnhB NC_002928.3 1648897 1649502 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1648897..1649502 Bordetella parapertussis 12822 1668070 NP_883832.1 CDS BPP1542 NC_002928.3 1649448 1650272 D ortholog of Bordetella pertussis (BX470248) BP1434; RNA methyltransferase 1649448..1650272 Bordetella parapertussis 12822 1668071 NP_883833.1 CDS BPP1543 NC_002928.3 1650284 1651111 R ortholog of Bordetella pertussis (BX470248) BP1435; hypothetical protein complement(1650284..1651111) Bordetella parapertussis 12822 1668072 NP_883834.1 CDS ppsA NC_002928.3 1651273 1653636 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1651273..1653636 Bordetella parapertussis 12822 1668073 NP_883835.1 CDS BPP1547 NC_002928.3 1655018 1655944 D ortholog of Bordetella pertussis (BX470248) BP1440; hypothetical protein 1655018..1655944 Bordetella parapertussis 12822 1666998 NP_883836.1 CDS smpB NC_002928.3 1657143 1657610 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1657143..1657610) Bordetella parapertussis 12822 1664864 NP_883837.1 CDS BPP1550 NC_002928.3 1657676 1658110 D ortholog of Bordetella pertussis (BX470248) BP1443; hypothetical protein 1657676..1658110 Bordetella parapertussis 12822 1664865 NP_883838.1 CDS BPP1551 NC_002928.3 1658100 1658450 D ortholog of Bordetella pertussis (BX470248) BP1444; hypothetical protein 1658100..1658450 Bordetella parapertussis 12822 1664866 NP_883839.1 CDS BPP1552 NC_002928.3 1658647 1659801 D ortholog of Bordetella pertussis (BX470248) BP1445; acyl-CoA dehydrogenase 1658647..1659801 Bordetella parapertussis 12822 1664867 NP_883840.1 CDS BPP1553 NC_002928.3 1659798 1660970 D ortholog of Bordetella pertussis (BX470248) BP1446; enoly-CoA hydratase 1659798..1660970 Bordetella parapertussis 12822 1666834 NP_883841.1 CDS mmsB NC_002928.3 1661018 1661911 D ortholog of Bordetella pertussis (BX470248) BP1447; 3-hydroxyisobutyrate dehydrogenase 1661018..1661911 Bordetella parapertussis 12822 1666835 NP_883842.1 CDS BPP1555 NC_002928.3 1661957 1662394 D ortholog of Bordetella pertussis (BX470248) BP1448; hypothetical protein 1661957..1662394 Bordetella parapertussis 12822 1666836 NP_883843.1 CDS BPP1556 NC_002928.3 1662454 1663143 D ortholog of Bordetella pertussis (BX470248) BP1449; hypothetical protein 1662454..1663143 Bordetella parapertussis 12822 1666837 NP_883844.1 CDS BPP1557 NC_002928.3 1663153 1664169 R ortholog of Bordetella pertussis (BX470248) BP1845; hypothetical protein complement(1663153..1664169) Bordetella parapertussis 12822 1666838 NP_883845.1 CDS BPP1558 NC_002928.3 1664336 1665382 D ortholog of Bordetella pertussis (BX470248) BP1846; hypothetical protein 1664336..1665382 Bordetella parapertussis 12822 1666839 NP_883846.1 CDS tmk NC_002928.3 1665379 1666005 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1665379..1666005 Bordetella parapertussis 12822 1667325 NP_883847.1 CDS holB NC_002928.3 1666002 1667054 D ortholog of Bordetella pertussis (BX470248) BP1848; DNA polymerase III subunit delta' 1666002..1667054 Bordetella parapertussis 12822 1667326 NP_883848.1 CDS BPP1561 NC_002928.3 1667095 1667874 D ortholog of Bordetella pertussis (BX470248) BP1849; hypothetical protein 1667095..1667874 Bordetella parapertussis 12822 1667327 NP_883849.1 CDS BPP1562 NC_002928.3 1667925 1668761 D ortholog of Bordetella pertussis (BX470248) BP1850; hypothetical protein 1667925..1668761 Bordetella parapertussis 12822 1667328 NP_883850.1 CDS BPP1563 NC_002928.3 1668957 1669694 D ortholog of Bordetella pertussis (BX470248) BP1851; transcriptional regulator 1668957..1669694 Bordetella parapertussis 12822 1667329 NP_883851.1 CDS glnQ NC_002928.3 1671178 1671951 D ortholog of Bordetella pertussis (BX470248) BP1855; glutamine transport ATP-binding protein 1671178..1671951 Bordetella parapertussis 12822 1666899 NP_883852.1 CDS gdhA NC_002928.3 1673020 1674369 D ortholog of Bordetella pertussis (BX470248) BP1857; glutamate dehydrogenase 1673020..1674369 Bordetella parapertussis 12822 1667078 NP_883853.1 CDS aldH NC_002928.3 1674445 1675941 R ortholog of Bordetella pertussis (BX470248) BP1858; aldehyde dehydrogenase complement(1674445..1675941) Bordetella parapertussis 12822 1667079 NP_883854.1 CDS amaB NC_002928.3 1675991 1677238 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(1675991..1677238) Bordetella parapertussis 12822 1667080 NP_883855.1 CDS ilvG NC_002928.3 1677248 1678981 R catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; thiamine pyrophosphate protein complement(1677248..1678981) Bordetella parapertussis 12822 1666616 NP_883856.1 CDS citE NC_002928.3 1678978 1679919 R ortholog of Bordetella pertussis (BX470248) BP1861; citrate lyase subunit beta complement(1678978..1679919) Bordetella parapertussis 12822 1666617 NP_883857.1 CDS BPP1574 NC_002928.3 1681199 1681681 R ortholog of Bordetella pertussis (BX470248) BP1863; hypothetical protein complement(1681199..1681681) Bordetella parapertussis 12822 1666619 NP_883858.1 CDS BPP1576 NC_002928.3 1682839 1683558 R ortholog of Bordetella pertussis (BX470248) BP1865; GntR family transcriptional regulator complement(1682839..1683558) Bordetella parapertussis 12822 1664813 NP_883859.1 CDS BPP1577 NC_002928.3 1683675 1684058 R ortholog of Bordetella pertussis (BX470248) BP1867; hypothetical protein complement(1683675..1684058) Bordetella parapertussis 12822 1664814 NP_883860.1 CDS BPP1578 NC_002928.3 1684113 1684595 D ortholog of Bordetella pertussis (BX470248) BP1868; cytochrome 1684113..1684595 Bordetella parapertussis 12822 1664815 NP_883861.1 CDS BPP1579 NC_002928.3 1684608 1686305 R Similar to Salmonella typhi hypothetical membrane protein YbjL or Sty0903 SWALL:Q8Z851 (EMBL:AL627268) (561 aa) fasta scores: E(): 3.7e-41, 31.81% id in 572 aa, and to Yersinia pestis hypothetical membrane protein Ypo1326 SWALL:Q8ZGH1 (EMBL:AJ414147) (562 aa) fasta scores: E(): 1.3e-41, 32.22% id in 571 aa; hypothetical protein complement(1684608..1686305) Bordetella parapertussis 12822 1664816 NP_883862.1 CDS BPP1582 NC_002928.3 1688206 1689939 R Similar to Pseudomonas aeruginosa hypothetical protein Pa3465 SWALL:Q9HYE1 (EMBL:AE004767) (571 aa) fasta scores: E(): 1e-126, 60.62% id in 574 aa, and to Rhizobium meliloti transport transmembrane protein R00235 or Smc02910 SWALL:Q92SW7 (EMBL:AL591783) (551 aa) fasta scores: E(): 5.8e-68, 38.94% id in 529 aa; hypothetical protein complement(1688206..1689939) Bordetella parapertussis 12822 1664818 NP_883863.1 CDS BPP1583 NC_002928.3 1690130 1691674 D Similar to Ralstonia solanacearum probable transmembrane protein Rsp1524 or Rs04801 SWALL:Q8XPW2 (EMBL:AL646085) (505 aa) fasta scores: E(): 5.5e-61, 39.96% id in 498 aa, and to Rhizobium loti two-component system histidine protein kinase Mll4698 SWALL:Q98DH8 (EMBL:AP003004) (535 aa) fasta scores: E(): 7.2e-20, 28.91% id in 505 aa; hypothetical protein 1690130..1691674 Bordetella parapertussis 12822 1666930 NP_883864.1 CDS BPP1584 NC_002928.3 1691779 1692330 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; possibly involved in prevention of copper toxicity; RNA polymerase sigma factor 1691779..1692330 Bordetella parapertussis 12822 1666931 NP_883865.1 CDS BPP1585 NC_002928.3 1692335 1693126 D Similar to Rhizobium loti hypothetical protein Mlr0408 SWALL:Q98MW6 (EMBL:AP002994) (257 aa) fasta scores: E(): 4.9e-19, 44.04% id in 252 aa, and to Agrobacterium tumefaciens transcriptional regulator PrtR or atu1484 or agr_c_2736 SWALL:Q8UFB4 (EMBL:AE009107) (258 aa) fasta scores: E(): 0.0097, 28.4% id in 264 aa; hypothetical protein 1692335..1693126 Bordetella parapertussis 12822 1666932 NP_883866.1 CDS BPP1586 NC_002928.3 1693215 1693934 D Similar to Pseudomonas aeruginosa hypothetical protein Pa1170 SWALL:Q9I4G7 (EMBL:AE004547) (244 aa) fasta scores: E(): 2.3e-41, 52.54% id in 236 aa, and to Ralstonia solanacearum hypothetical transmembrane protein Rsc0556 or Rs04909 SWALL:Q8Y1Y1 (EMBL:AL646060) (232 aa) fasta scores: E(): 1.7e-33, 48.85% id in 219 aa; hypothetical protein 1693215..1693934 Bordetella parapertussis 12822 1666933 NP_883867.1 CDS BPP1587 NC_002928.3 1694113 1695324 R Similar to Pseudomonas aeruginosa probable two-component response regulator Pa3947 SWALL:Q9HX69 (EMBL:AE004813) (392 aa) fasta scores: E(): 1.8e-57, 44.83% id in 397 aa, and to Ralstonia solanacearum probable two-component response regulator transcription regulator protein Rsc3387 or rs06101 SWALL:Q8XU07 (EMBL:AL646075) (403 aa) fasta scores: E(): 2e-26, 32.39% id in 392 aa; two-component response regulator complement(1694113..1695324) Bordetella parapertussis 12822 1666934 NP_883868.1 CDS BPP1588 NC_002928.3 1695638 1696147 D Similar to Rhizobium leguminosarum hypothetical 14.7 kDa protein SWALL:Q9AE37 (EMBL:AJ310723) (135 aa) fasta scores: E(): 0.0057, 28.82% id in 111 aa, and to Rhizobium meliloti hypothetical protein R02424 or Smc01516 SWALL:Q92N19 (EMBL:AL591790) (137 aa) fasta scores: E(): 0.0024, 33.67% id in 98 aa; hypothetical protein 1695638..1696147 Bordetella parapertussis 12822 1666935 NP_883869.1 CDS BPP1589 NC_002928.3 1696274 1697065 D Similar to Pseudomonas fluorescens transmembrane regulator PrtR SWALL:Q9KIN0 (EMBL:AF228766) (242 aa) fasta scores: E(): 0.0013, 31.12% id in 241 aa, and to Rhizobium loti hypothetical protein Mlr0408 SWALL:Q98MW6 (EMBL:AP002994) (257 aa) fasta scores: E(): 2.1e-21, 39.04% id in 251 aa; transmembrane regulator 1696274..1697065 Bordetella parapertussis 12822 1666936 NP_883870.1 CDS BPP1590 NC_002928.3 1697259 1697696 D Similar to Brucella melitensis universal stress protein family Bmeii0245 SWALL:Q8YDD2 (EMBL:AE009663) (148 aa) fasta scores: E(): 3.2e-18, 46.3% id in 149 aa, and to Agrobacterium tumefaciens hypothetical protein Atu0496 or Agr_c_878 SWALL:Q8UI04 (EMBL:AE009019) (160 aa) fasta scores: E(): 9.1e-19, 48.96% id in 145 aa; universal stress protein 1697259..1697696 Bordetella parapertussis 12822 1665389 NP_883871.1 CDS astE NC_002928.3 1697797 1698786 D ortholog of Bordetella pertussis (BX470248) BP1176; succinylglutamate desuccinylase 1697797..1698786 Bordetella parapertussis 12822 1665390 NP_883872.1 CDS BPP1592 NC_002928.3 1698870 1699238 D ortholog of Bordetella pertussis (BX470248) BP1175; hypothetical protein 1698870..1699238 Bordetella parapertussis 12822 1665391 NP_883873.1 CDS BPP1593 NC_002928.3 1699204 1699923 R ortholog of Bordetella pertussis (BX470248) BP1174; hypothetical protein complement(1699204..1699923) Bordetella parapertussis 12822 1665392 NP_883874.1 CDS BPP1594 NC_002928.3 1699992 1701584 D ortholog of Bordetella pertussis (BX470248) BP1172; hypothetical protein 1699992..1701584 Bordetella parapertussis 12822 1665393 NP_883875.1 CDS BPP1595 NC_002928.3 1701599 1702177 R ortholog of Bordetella pertussis (BX470248) BP1171; hypothetical protein complement(1701599..1702177) Bordetella parapertussis 12822 1665171 NP_883876.1 CDS BPP1596 NC_002928.3 1702202 1703155 R ortholog of Bordetella pertussis (BX470248) BP1170; hypothetical protein complement(1702202..1703155) Bordetella parapertussis 12822 1665172 NP_883877.1 CDS BPP1597 NC_002928.3 1703195 1704112 R ortholog of Bordetella pertussis (BX470248) BP1169; oxidoreductase complement(1703195..1704112) Bordetella parapertussis 12822 1665173 NP_883878.1 CDS BPP1599 NC_002928.3 1705170 1705916 R ortholog of Bordetella pertussis (BX470248) BP1167; hypothetical protein complement(1705170..1705916) Bordetella parapertussis 12822 1665175 NP_883879.1 CDS ldcA NC_002928.3 1706277 1707182 D ortholog of Bordetella pertussis (BX470248) BP1166; muramoyltetrapeptide carboxypeptidase 1706277..1707182 Bordetella parapertussis 12822 1665176 NP_883880.1 CDS BPP1601 NC_002928.3 1707258 1707380 R ortholog of Bordetella pertussis (BX470248) BP1165A; hypothetical protein complement(1707258..1707380) Bordetella parapertussis 12822 1665177 NP_883881.1 CDS BPP1602 NC_002928.3 1707409 1709307 R ortholog of Bordetella pertussis (BX470248) BP1165; sodium/solute symporter complement(1707409..1709307) Bordetella parapertussis 12822 1666225 NP_883882.1 CDS BPP1603 NC_002928.3 1709541 1710986 R ortholog of Bordetella pertussis (BX470248) BP1164; hypothetical protein complement(1709541..1710986) Bordetella parapertussis 12822 1666226 NP_883883.1 CDS BPP1604 NC_002928.3 1711140 1712048 R ortholog of Bordetella pertussis (BX470248) BP1163; short-chain dehydrogenase complement(1711140..1712048) Bordetella parapertussis 12822 1666227 NP_883884.1 CDS BPP1605 NC_002928.3 1712045 1712929 R ortholog of Bordetella pertussis (BX470248) BP1162; LysR family transcriptional regulator complement(1712045..1712929) Bordetella parapertussis 12822 1666228 NP_883885.1 CDS BPP1606 NC_002928.3 1713029 1714153 D ortholog of Bordetella pertussis (BX470248) BP1161; racemase 1713029..1714153 Bordetella parapertussis 12822 1666229 NP_883886.1 CDS BPP1607 NC_002928.3 1714199 1715164 D ortholog of Bordetella pertussis (BX470248) BP1160; lipoprotein 1714199..1715164 Bordetella parapertussis 12822 1667061 NP_883887.1 CDS BPP1608 NC_002928.3 1715157 1716011 D ortholog of Bordetella pertussis (BX470248) BP1159; 2-pyrone-4,6-dicarboxylic acid hydrolase 1715157..1716011 Bordetella parapertussis 12822 1667062 NP_883888.1 CDS BPP1609 NC_002928.3 1716117 1716527 D ortholog of Bordetella pertussis (BX470248) BP1158; dioxygenase 1716117..1716527 Bordetella parapertussis 12822 1667063 NP_883889.1 CDS BPP1610 NC_002928.3 1716524 1717474 R transposase for IS1002 element; IS1002 transposase complement(1716524..1717474) Bordetella parapertussis 12822 1667064 NP_883890.1 CDS csaA NC_002928.3 1717561 1717899 R Similar to Bacillus subtilis CsaA protein SWALL:CSAA_BACSU (SWALL:P37584) (110 aa) fasta scores: E(): 1.1e-19, 53.15% id in 111 aa, and to Brucella melitensis protein secretion chaperonin CsaA Bmei0491 SWALL:Q8YIF3 (EMBL:AE009491) (115 aa) fasta scores: E(): 1.4e-24, 58.71% id in 109 aa; protein secretion chaperone complement(1717561..1717899) Bordetella parapertussis 12822 1667065 NP_883891.1 CDS BPP1612 NC_002928.3 1718289 1719863 D Similar to Brucella melitensis Rtn protein Bmeii0904 SWALL:Q8YBJ6 (EMBL:AE009724) (530 aa) fasta scores: E(): 2.3e-43, 31.21% id in 519 aa, and to Xylella fastidiosa hypothetical protein Xf0470 SWALL:Q9PG32 (EMBL:AE003897) (530 aa) fasta scores: E(): 3.6e-41, 31.55% id in 526 aa; hypothetical protein 1718289..1719863 Bordetella parapertussis 12822 1667066 NP_883892.1 CDS BPP1613 NC_002928.3 1720023 1721681 D Similar to Ralstonia solanacearum probable methyl-accepting chemotaxis transducer transmembrane protein Rsp0255 or Rs03711 SWALL:Q8XT60 (EMBL:AL646077) (529 aa) fasta scores: E(): 1.7e-67, 44.15% id in 530 aa, and to Yersinia pestis methyl-accepting chemotaxis protein Ypo1644 SWALL:Q8ZFP9 (EMBL:AJ414149) (526 aa) fasta scores: E(): 1.4e-56, 40.78% id in 532 aa; methyl-accepting chemotaxis protein 1720023..1721681 Bordetella parapertussis 12822 1666170 NP_883893.1 CDS BPP1614 NC_002928.3 1722030 1723457 D The C-terminal region of this CDS is similar to the C-terminal regions of many including Ralstonia solanacearum probable transmembrane protein Rsc0375 or Rs03343 SWALL:Q8Y2G1 (EMBL:AL646058) (972 aa) fasta scores: E(): 3.7e-20, 34.85% id in 307 aa, and to Anabaena sp. hypothetical protein Alr3170 SWALL:Q8YSB9 (EMBL:AP003592) (1021 aa) fasta scores: E(): 9.4e-20, 30.6% id in 366 aa; hypothetical protein 1722030..1723457 Bordetella parapertussis 12822 1666171 NP_883894.1 CDS BPP1615 NC_002928.3 1723525 1724496 D Similar to Streptomyces coelicolor membrane transport protein Sc8f11.16C SWALL:Q9KZG2 (EMBL:AL353864) (325 aa) fasta scores: E(): 6.2e-07, 30.03% id in 293 aa, and to Pseudomonas aeruginosa probable Mfs transporter Pa2701 SWALL:Q9I0E1 (EMBL:AE004698) (529 aa) fasta scores: E(): 0.0055, 34.35% id in 195 aa; hypothetical protein 1723525..1724496 Bordetella parapertussis 12822 1666172 NP_883895.1 CDS BPP1616 NC_002928.3 1724509 1724814 R no significant database matches; hypothetical protein complement(1724509..1724814) Bordetella parapertussis 12822 1666173 NP_883896.1 CDS tynE NC_002928.3 1725708 1727183 D autotransporter, very small passenger domain.; autotransporter 1725708..1727183 Bordetella parapertussis 12822 1668246 NP_883897.1 CDS BPP1618 NC_002928.3 1727612 1729171 D autotransporter 1727612..1729171 Bordetella parapertussis 12822 1668247 NP_883898.1 CDS BPP1619 NC_002928.3 1729465 1729686 D ortholog of Bordetella pertussis (BX470248) BP0892; hypothetical protein 1729465..1729686 Bordetella parapertussis 12822 1668248 NP_883899.1 CDS BPP1620 NC_002928.3 1729819 1730058 D ortholog of Bordetella pertussis (BX470248) BP0893; hypothetical protein 1729819..1730058 Bordetella parapertussis 12822 1668249 NP_883900.1 CDS pmi NC_002928.3 1730178 1731296 D ortholog of Bordetella pertussis (BX470248) BP0894; mannose-6-phosphate isomerase 1730178..1731296 Bordetella parapertussis 12822 1668250 NP_883901.1 CDS BPP1622 NC_002928.3 1731393 1731608 D ortholog of Bordetella pertussis (BX470248) BP0895; hypothetical protein 1731393..1731608 Bordetella parapertussis 12822 1668251 NP_883902.1 CDS BPP1623 NC_002928.3 1731802 1732053 D ortholog of Bordetella pertussis (BX470248) BP0896; hypothetical protein 1731802..1732053 Bordetella parapertussis 12822 1668252 NP_883903.1 CDS BPP1624 NC_002928.3 1732063 1732446 R ortholog of Bordetella pertussis (BX470248) BP0898; ferredoxin complement(1732063..1732446) Bordetella parapertussis 12822 1668253 NP_883904.1 CDS BPP1625 NC_002928.3 1732501 1734318 R ortholog of Bordetella pertussis (BX470248) BP0899; ABC transporter ATP-binding protein complement(1732501..1734318) Bordetella parapertussis 12822 1668254 NP_883905.1 CDS BPP1626 NC_002928.3 1734375 1735292 D ortholog of Bordetella pertussis (BX470248) BP0900; oxidoreductase 1734375..1735292 Bordetella parapertussis 12822 1668255 NP_883906.1 CDS BPP1627 NC_002928.3 1735338 1736318 D ortholog of Bordetella pertussis (BX470248) BP0901; oxidoreductase 1735338..1736318 Bordetella parapertussis 12822 1665861 NP_883907.1 CDS BPP1628 NC_002928.3 1736315 1736527 R ortholog of Bordetella pertussis (BX470248) BP0902; hypothetical protein complement(1736315..1736527) Bordetella parapertussis 12822 1665862 NP_883908.1 CDS BPP1629 NC_002928.3 1736524 1737705 R ortholog of Bordetella pertussis (BX470248) BP0903; hypothetical protein complement(1736524..1737705) Bordetella parapertussis 12822 1665863 NP_883909.1 CDS pphA NC_002928.3 1737869 1738603 D ortholog of Bordetella pertussis (BX470248) BP0904; serine/threonine protein phosphatase 1 1737869..1738603 Bordetella parapertussis 12822 1665864 NP_883910.1 CDS mrcA NC_002928.3 1738605 1741289 R ortholog of Bordetella pertussis (BX470248) BP0905; penicillin-binding protein 1A complement(1738605..1741289) Bordetella parapertussis 12822 1665865 NP_883911.1 CDS BPP1632 NC_002928.3 1741353 1743266 R ortholog of Bordetella pertussis (BX470248) BP0906; peptidase complement(1741353..1743266) Bordetella parapertussis 12822 1665866 NP_883912.1 CDS BPP1633 NC_002928.3 1743426 1743878 D ortholog of Bordetella pertussis (BX470248) BP0907; ortholog of Bordetella pertussis (BX470248) BP0907; lipoprotein 1743426..1743878 Bordetella parapertussis 12822 1665867 NP_883913.1 CDS BPP1634 NC_002928.3 1743881 1744390 R ortholog of Bordetella pertussis (BX470248) BP0908; hypothetical protein complement(1743881..1744390) Bordetella parapertussis 12822 1664654 NP_883914.1 CDS dinP NC_002928.3 1744389 1745474 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1744389..1745474 Bordetella parapertussis 12822 1664655 NP_883915.1 CDS BPP1636 NC_002928.3 1745498 1745962 R ortholog of Bordetella pertussis (BX470248) BP2213; hypothetical protein complement(1745498..1745962) Bordetella parapertussis 12822 1664656 NP_883916.1 CDS fhp NC_002928.3 1746109 1747317 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 1746109..1747317 Bordetella parapertussis 12822 1664657 NP_883917.1 CDS BPP1638 NC_002928.3 1747328 1747798 D ortholog of Bordetella pertussis (BX470248) BP2211; DNA-binding protein 1747328..1747798 Bordetella parapertussis 12822 1664658 NP_883918.1 CDS dnaE2 NC_002928.3 1749271 1752429 R DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase complement(1749271..1752429) Bordetella parapertussis 12822 1664660 NP_883919.1 CDS BPP1641 NC_002928.3 1752438 1753823 R Similar to Ralstonia solanacearum hypothetical protein Rsp0799 or Rs01908 SWALL:Q8XRN2 (EMBL:AL646080) (523 aa) fasta scores: E(): 4.8e-37, 45.08% id in 488 aa, and to Rhizobium meliloti hypothetical protein Ra0488 or Sma0890 SWALL:Q92ZJ7 (EMBL:AE007239) (474 aa) fasta scores: E(): 2.6e-22, 30.2% id in 480 aa; hypothetical protein complement(1752438..1753823) Bordetella parapertussis 12822 1666538 NP_883920.1 CDS BPP1642 NC_002928.3 1753840 1754547 R Similar to Ralstonia solanacearum hypothetical protein Rsp0798 or Rs01909 SWALL:Q8XRN3 (EMBL:AL646080) (272 aa) fasta scores: E(): 9.8e-35, 51.58% id in 221 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0671 SWALL:Q9I5Q0 (EMBL:AE004502) (183 aa) fasta scores: E(): 9.7e-23, 49.43% id in 176 aa; hypothetical protein complement(1753840..1754547) Bordetella parapertussis 12822 1666539 NP_883921.1 CDS BPP1643 NC_002928.3 1754658 1755362 D Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YpfH 1754658..1755362 Bordetella parapertussis 12822 1666540 NP_883922.1 CDS BPP1644 NC_002928.3 1755369 1756790 R Similar to Pseudomonas aeruginosa OprN protein SWALL:P95423 (EMBL:X99514) (472 aa) fasta scores: E(): 5.8e-41, 38.02% id in 476 aa, and to Ralstonia solanacearum probable outer membrane channel lipoprotein Rsc0166 or Rs01036 SWALL:Q8Y315 (EMBL:AL646057) (480 aa) fasta scores: E(): 2.7e-33, 34.29% id in 487 aa; outer membrane efflux protein complement(1755369..1756790) Bordetella parapertussis 12822 1666541 NP_883923.1 CDS BPP1645 NC_002928.3 1756818 1757711 R Similar to Brucella melitensis fusaric acid resistance protein FusE Bmeii0533 SWALL:Q8YCJ5 (EMBL:AE009689) (285 aa) fasta scores: E(): 2.3e-45, 51.43% id in 278 aa, and to Agrobacterium tumefaciens HlyD family secretion protein Atu5539 or Agr_pat_806 SWALL:AAL46225 (EMBL:AE008974) (291 aa) fasta scores: E(): 4.1e-40, 47.16% id in 282 aa; HlyD family secretion protein complement(1756818..1757711) Bordetella parapertussis 12822 1666542 NP_883924.1 CDS BPP1646 NC_002928.3 1757716 1757928 R Similar to Salmonella typhimurium and Salmonella typhi inner membrane protein YhcR or Stm3366 or Sty3546A SWALL:Q8XEK3 (EMBL:AE008855) (67 aa) fasta scores: E(): 1.8e-05, 42.3% id in 52 aa, and to Agrobacterium tumefaciens hypothetical protein Atu5540 SWALL:AAL46226 (EMBL:AE008974) (69 aa) fasta scores: E(): 4e-07, 41.27% id in 63 aa; hypothetical protein complement(1757716..1757928) Bordetella parapertussis 12822 1668214 NP_883925.1 CDS BPP1648 NC_002928.3 1759967 1760440 R ortholog of Bordetella pertussis (BX470248) BP2664; MarR family transcriptional regulator complement(1759967..1760440) Bordetella parapertussis 12822 1668216 NP_883926.1 CDS BPP1649 NC_002928.3 1760604 1761224 R ortholog of Bordetella pertussis (BX470248) BP2663; transcriptional regulatory protein complement(1760604..1761224) Bordetella parapertussis 12822 1668217 NP_883927.1 CDS BPP1650 NC_002928.3 1761369 1762160 D ortholog of Bordetella pertussis (BX470248) BP2662; class II aldolase/adducin domain-containing protein 1761369..1762160 Bordetella parapertussis 12822 1668218 NP_883928.1 CDS BPP1651 NC_002928.3 1762215 1763306 D ortholog of Bordetella pertussis (BX470248) BP2661; hypothetical protein 1762215..1763306 Bordetella parapertussis 12822 1668219 NP_883929.1 CDS BPP1652 NC_002928.3 1763328 1763771 R ortholog of Bordetella pertussis (BX470248) BP2660; hypothetical protein complement(1763328..1763771) Bordetella parapertussis 12822 1668220 NP_883930.1 CDS BPP1653 NC_002928.3 1763800 1764432 R ortholog of Bordetella pertussis (BX470248) BP2659; hypothetical protein complement(1763800..1764432) Bordetella parapertussis 12822 1664858 NP_883931.1 CDS BPP1654 NC_002928.3 1764490 1765710 R transposase for IS1001 element; transposase complement(1764490..1765710) Bordetella parapertussis 12822 1664859 NP_883932.1 CDS sbp NC_002928.3 1766095 1766982 D ortholog of Bordetella pertussis (BX470248) BP0966; sulfate-binding protein 1766095..1766982 Bordetella parapertussis 12822 1664860 NP_883933.1 CDS cysU NC_002928.3 1766998 1767879 D ortholog of Bordetella pertussis (BX470248) BP0967; sulfate transport system permease 1766998..1767879 Bordetella parapertussis 12822 1664861 NP_883934.1 CDS cysW NC_002928.3 1767876 1768775 D ortholog of Bordetella pertussis (BX470248) BP0968; sulfate transport system permease 1767876..1768775 Bordetella parapertussis 12822 1664862 NP_883935.1 CDS cysA NC_002928.3 1768800 1769864 D ortholog of Bordetella pertussis (BX470248) BP0969; sulfate transport ATP-binding protein 1768800..1769864 Bordetella parapertussis 12822 1667835 NP_883936.1 CDS cysH NC_002928.3 1769861 1770613 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 1769861..1770613 Bordetella parapertussis 12822 1667836 NP_883937.1 CDS cysD NC_002928.3 1770663 1771571 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase 1770663..1771571 Bordetella parapertussis 12822 1667837 NP_883938.1 CDS cysN NC_002928.3 1771624 1772922 D ortholog of Bordetella pertussis (BX470248) BP0971; sulfate adenylyltransferase 1771624..1772922 Bordetella parapertussis 12822 1667838 NP_883939.1 CDS BPP1662 NC_002928.3 1773091 1774386 D ortholog of Bordetella pertussis (BX470248) BP0972; hypothetical protein 1773091..1774386 Bordetella parapertussis 12822 1667839 NP_883940.1 CDS BPP1663 NC_002928.3 1774540 1774920 D ortholog of Bordetella pertussis (BX470248) BP0973; hypothetical protein 1774540..1774920 Bordetella parapertussis 12822 1667840 NP_883941.1 CDS rplS NC_002928.3 1776097 1776477 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1776097..1776477 Bordetella parapertussis 12822 1665258 NP_883942.1 CDS BPP1666 NC_002928.3 1776703 1777479 D ortholog of Bordetella pertussis (BX470248) BP0976; hypothetical protein 1776703..1777479 Bordetella parapertussis 12822 1665259 NP_883943.1 CDS BPP1667 NC_002928.3 1777476 1778630 D ortholog of Bordetella pertussis (BX470248) BP0977; oxidoreductase 1777476..1778630 Bordetella parapertussis 12822 1666764 NP_883944.1 CDS BPP1668 NC_002928.3 1778889 1779791 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(1778889..1779791) Bordetella parapertussis 12822 1666765 NP_883945.1 CDS BPP1669 NC_002928.3 1779788 1781092 R ortholog of Bordetella pertussis (BX470248) BP2688; integral membrane zinc-metalloprotease complement(1779788..1781092) Bordetella parapertussis 12822 1666766 NP_883946.1 CDS BPP1670 NC_002928.3 1781098 1781643 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1781098..1781643 Bordetella parapertussis 12822 1666767 NP_883947.1 CDS BPP1671 NC_002928.3 1781677 1782363 D ortholog of Bordetella pertussis (BX470248) BP2686; hypothetical protein 1781677..1782363 Bordetella parapertussis 12822 1666768 NP_883948.1 CDS paaX NC_002928.3 1782335 1783264 R ortholog of Bordetella pertussis (BX470248) BP2685; phenylacetic acid degradation operon negative regulatory protein complement(1782335..1783264) Bordetella parapertussis 12822 1666769 NP_883949.1 CDS paaA NC_002928.3 1783436 1784419 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 1783436..1784419 Bordetella parapertussis 12822 1666770 NP_883950.1 CDS paaB NC_002928.3 1784484 1784768 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 1784484..1784768 Bordetella parapertussis 12822 1666771 NP_883951.1 CDS paaC NC_002928.3 1784784 1785548 D ortholog of Bordetella pertussis (BX470248) BP2682; phenylacetic acid degradation protein 1784784..1785548 Bordetella parapertussis 12822 1666772 NP_883952.1 CDS paaD NC_002928.3 1785545 1786051 D ortholog of Bordetella pertussis (BX470248) BP2681; phenylacetic acid degradation protein 1785545..1786051 Bordetella parapertussis 12822 1666773 NP_883953.1 CDS paaE NC_002928.3 1786063 1787151 D ortholog of Bordetella pertussis (BX470248) BP2680; phenylacetic acid degradation NADH oxidoreductase 1786063..1787151 Bordetella parapertussis 12822 1667102 NP_883954.1 CDS BPP1678 NC_002928.3 1787202 1788866 D ortholog of Bordetella pertussis (BX470248) BP2678; oxidoreductase 1787202..1788866 Bordetella parapertussis 12822 1667103 NP_883955.1 CDS paaG NC_002928.3 1788877 1789665 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1788877..1789665 Bordetella parapertussis 12822 1667104 NP_883956.1 CDS paaI NC_002928.3 1789665 1790135 D ortholog of Bordetella pertussis (BX470248) BP2676; phenylacetic acid degradation protein 1789665..1790135 Bordetella parapertussis 12822 1667105 NP_883957.1 CDS paaK NC_002928.3 1790327 1791523 D ortholog of Bordetella pertussis (BX470248) BP2675; phenylacetate-coenzyme A ligase 1790327..1791523 Bordetella parapertussis 12822 1667106 NP_883958.1 CDS fimN NC_002928.3 1792344 1792934 R Similar to Bordetella bronchiseptica fimbrial subunit protein FimN SWALL:Q9F8W4 (EMBL:AF231910) (209 aa) fasta scores: E(): 1.2e-71, 97.5% id in 200 aa; fimbrial subunit protein complement(1792344..1792934) Bordetella parapertussis 12822 1667108 NP_883959.1 CDS BPP1684 NC_002928.3 1793047 1793679 R Similar to Bordetella pertussis serotype 2 fimbrial subunit precursor Fim2 SWALL:FM2_BORPE (SWALL:P05788) (207 aa) fasta scores: E(): 1.1e-50, 70.64% id in 201 aa, and to Bordetella bronchiseptica fimbrial subunit precursor Fim2 SWALL:Q44885 (EMBL:X74119) (208 aa) fasta scores: E(): 2e-47, 67% id in 197 aa; fimbrial protein complement(1793047..1793679) Bordetella parapertussis 12822 1668124 NP_883960.1 CDS BPP1685 NC_002928.3 1793819 1795096 R ortholog of Bordetella pertussis (BX470248) BP2354; inner membrane protein complement(1793819..1795096) Bordetella parapertussis 12822 1668125 NP_883961.1 CDS BPP1686 NC_002928.3 1795137 1795637 R ortholog of Bordetella pertussis (BX470248) BP2353; inner membrane transport protein complement(1795137..1795637) Bordetella parapertussis 12822 1668126 NP_883962.1 CDS BPP1687 NC_002928.3 1795723 1796709 R ortholog of Bordetella pertussis (BX470248) BP2352; periplasmic substrate-binding transport protein complement(1795723..1796709) Bordetella parapertussis 12822 1668127 NP_883963.1 CDS BPP1688 NC_002928.3 1796824 1799355 D ortholog of Bordetella pertussis (BX470248) BP2351; inner membrane transport permease 1796824..1799355 Bordetella parapertussis 12822 1668128 NP_883964.1 CDS BPP1689 NC_002928.3 1799355 1799780 D ortholog of Bordetella pertussis (BX470248) BP2350; globin-like protein 1799355..1799780 Bordetella parapertussis 12822 1665103 NP_883965.1 CDS BPP1690 NC_002928.3 1799770 1800504 D catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 1799770..1800504 Bordetella parapertussis 12822 1665104 NP_883966.1 CDS BPP1691 NC_002928.3 1800537 1801739 D ortholog of Bordetella pertussis (BX470248) BP2348; polyamine transport protein 1800537..1801739 Bordetella parapertussis 12822 1665105 NP_883967.1 CDS BPP1692 NC_002928.3 1801746 1802873 D ortholog of Bordetella pertussis (BX470248) BP2347; polyamine transport ATP-binding protein 1801746..1802873 Bordetella parapertussis 12822 1665106 NP_883968.1 CDS BPP1693 NC_002928.3 1802870 1803784 D ortholog of Bordetella pertussis (BX470248) BP2346; inner membrane permease polyamine transport protein 1802870..1803784 Bordetella parapertussis 12822 1665107 NP_883969.1 CDS BPP1694 NC_002928.3 1803781 1804590 D ortholog of Bordetella pertussis (BX470248) BP2345; inner membrane permease polyamine transport protein 1803781..1804590 Bordetella parapertussis 12822 1665690 NP_883970.1 CDS BPP1695 NC_002928.3 1804587 1804943 D ortholog of Bordetella pertussis (BX470248) BP2344; hypothetical protein 1804587..1804943 Bordetella parapertussis 12822 1665691 NP_883971.1 CDS BPP1696 NC_002928.3 1804948 1805664 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 1804948..1805664 Bordetella parapertussis 12822 1665692 NP_883972.1 CDS BPP1697 NC_002928.3 1805672 1806379 R ortholog of Bordetella pertussis (BX470248) BP2342; hypothetical protein complement(1805672..1806379) Bordetella parapertussis 12822 1665693 NP_883973.1 CDS BPP1698 NC_002928.3 1806457 1807872 D ortholog of Bordetella pertussis (BX470248) BP2341; lipoprotein 1806457..1807872 Bordetella parapertussis 12822 1665694 NP_883974.1 CDS BPP1699 NC_002928.3 1807952 1809610 D ortholog of Bordetella pertussis (BX470248) BP2340; acyl-CoA dehydrogenase 1807952..1809610 Bordetella parapertussis 12822 1665695 NP_883975.1 CDS rpiA NC_002928.3 1809664 1810344 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1809664..1810344 Bordetella parapertussis 12822 1667426 NP_883976.1 CDS BPP1701 NC_002928.3 1810472 1811278 D ortholog of Bordetella pertussis (BX470248) BP2338; transporter 1810472..1811278 Bordetella parapertussis 12822 1667427 NP_883977.1 CDS BPP1702 NC_002928.3 1811292 1813175 R ortholog of Bordetella pertussis (BX470248) BP2337; phospholipase complement(1811292..1813175) Bordetella parapertussis 12822 1667428 NP_883978.1 CDS BPP1703 NC_002928.3 1813229 1813501 R ortholog of Bordetella pertussis (BX470248) BP2336; hypothetical protein complement(1813229..1813501) Bordetella parapertussis 12822 1667429 NP_883979.1 CDS argA NC_002928.3 1813575 1814978 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(1813575..1814978) Bordetella parapertussis 12822 1667430 NP_883980.1 CDS BPP1705 NC_002928.3 1815082 1818993 D ortholog of Bordetella pertussis (BX470248) BP2334; ATP-dependent helicase 1815082..1818993 Bordetella parapertussis 12822 1667431 NP_883981.1 CDS BPP1706 NC_002928.3 1819126 1820052 R ortholog of Bordetella pertussis (BX470248) BP2333; dioxygenase complement(1819126..1820052) Bordetella parapertussis 12822 1667432 NP_883982.1 CDS dnaE NC_002928.3 1820164 1823655 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1820164..1823655 Bordetella parapertussis 12822 1667433 NP_883983.1 CDS BPP1708 NC_002928.3 1823655 1824758 D ortholog of Bordetella pertussis (BX470248) BP2331; transferase 1823655..1824758 Bordetella parapertussis 12822 1667331 NP_883984.1 CDS BPP1709 NC_002928.3 1824751 1825602 D ortholog of Bordetella pertussis (BX470248) BP2330; hypothetical protein 1824751..1825602 Bordetella parapertussis 12822 1667332 NP_883985.1 CDS BPP1710 NC_002928.3 1825599 1826351 D ortholog of Bordetella pertussis (BX470248) BP2329; transferase 1825599..1826351 Bordetella parapertussis 12822 1667333 NP_883986.1 CDS BPP1711 NC_002928.3 1826348 1827460 D ortholog of Bordetella pertussis (BX470248) BP2328; transferase 1826348..1827460 Bordetella parapertussis 12822 1667334 NP_883987.1 CDS BPP1712 NC_002928.3 1827439 1829055 R ortholog of Bordetella pertussis (BX470248) BP2327; outer membrane protein complement(1827439..1829055) Bordetella parapertussis 12822 1667335 NP_883988.1 CDS BPP1713 NC_002928.3 1829420 1830145 D ortholog of Bordetella pertussis (BX470248) BP2326; polysaccharide deacetylase 1829420..1830145 Bordetella parapertussis 12822 1667336 NP_883989.1 CDS BPP1714 NC_002928.3 1830120 1831274 D ortholog of Bordetella pertussis (BX470248) BP2325; transferase 1830120..1831274 Bordetella parapertussis 12822 1667337 NP_883990.1 CDS BPP1715 NC_002928.3 1831399 1831671 R ortholog of Bordetella pertussis (BX470248) BP2324; hypothetical protein complement(1831399..1831671) Bordetella parapertussis 12822 1667338 NP_883991.1 CDS BPP1716 NC_002928.3 1831676 1832440 R ortholog of Bordetella pertussis (BX470248) BP2323; hypothetical protein complement(1831676..1832440) Bordetella parapertussis 12822 1667339 NP_883992.1 CDS waaF NC_002928.3 1832453 1833418 R ortholog of Bordetella pertussis (BX470248) BP2322; heptosyltransferase II complement(1832453..1833418) Bordetella parapertussis 12822 1666831 NP_883993.1 CDS BPP1718 NC_002928.3 1833434 1835305 D ortholog of Bordetella pertussis (BX470248) BP2321; ABC transporter 1833434..1835305 Bordetella parapertussis 12822 1666832 NP_883994.1 CDS BPP1719 NC_002928.3 1835278 1836777 R ortholog of Bordetella pertussis (BX470248) BP2320; inner membrane efflux protein complement(1835278..1836777) Bordetella parapertussis 12822 1666833 NP_883995.1 CDS BPP1720 NC_002928.3 1836894 1837406 D ortholog of Bordetella pertussis (BX470248) BP2319; transcriptional regulator 1836894..1837406 Bordetella parapertussis 12822 1666523 NP_883996.1 CDS BPP1721 NC_002928.3 1837403 1838305 D ortholog of Bordetella pertussis (BX470248) BP2318; dehydratase 1837403..1838305 Bordetella parapertussis 12822 1666524 NP_883997.1 CDS BPP1722 NC_002928.3 1838339 1839802 R ortholog of Bordetella pertussis (BX470248) BP2317; ribonuclease complement(1838339..1839802) Bordetella parapertussis 12822 1666525 NP_883998.1 CDS BPP1723 NC_002928.3 1845973 1846374 R ortholog of Bordetella pertussis (BX470248) BP2036; hypothetical protein complement(1845973..1846374) Bordetella parapertussis 12822 1666526 NP_883999.1 CDS BPP1724 NC_002928.3 1846488 1846760 R ortholog of Bordetella pertussis (BX470248) BP2037; hypothetical protein complement(1846488..1846760) Bordetella parapertussis 12822 1666527 NP_884000.1 CDS BPP1725 NC_002928.3 1846757 1847758 R ortholog of Bordetella pertussis (BX470248) BP2038; hydroxlacyl-CoA dehydrogenase complement(1846757..1847758) Bordetella parapertussis 12822 1666528 NP_884001.1 CDS BPP1726 NC_002928.3 1847907 1849301 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 1847907..1849301 Bordetella parapertussis 12822 1667045 NP_884002.1 CDS BPP1727 NC_002928.3 1849324 1849719 R ortholog of Bordetella pertussis (BX470248) BP2040; hypothetical protein complement(1849324..1849719) Bordetella parapertussis 12822 1667046 NP_884003.1 CDS proA NC_002928.3 1849716 1850975 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(1849716..1850975) Bordetella parapertussis 12822 1667047 NP_884004.1 CDS holA NC_002928.3 1851097 1852152 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1851097..1852152) Bordetella parapertussis 12822 1667048 NP_884005.1 CDS BPP1730 NC_002928.3 1852155 1852814 R ortholog of Bordetella pertussis (BX470248) BP2043; lipoprotein complement(1852155..1852814) Bordetella parapertussis 12822 1667049 NP_884006.1 CDS leuS NC_002928.3 1852830 1855487 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1852830..1855487) Bordetella parapertussis 12822 1667050 NP_884007.1 CDS BPP1732 NC_002928.3 1855565 1856722 R ortholog of Bordetella pertussis (BX470248) BP2045; transmembrane transport protein complement(1855565..1856722) Bordetella parapertussis 12822 1667051 NP_884008.1 CDS BPP1733 NC_002928.3 1856762 1857274 R ortholog of Bordetella pertussis (BX470248) BP2046; MarR family transcriptional regulator complement(1856762..1857274) Bordetella parapertussis 12822 1667052 NP_884009.1 CDS bph2 NC_002928.3 1857397 1857714 R ortholog of Bordetella pertussis (BX470248) BP2047; DNA-binding protein Bph2 complement(1857397..1857714) Bordetella parapertussis 12822 1666179 NP_884010.1 CDS rpmG NC_002928.3 1860210 1860377 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1860210..1860377) Bordetella parapertussis 12822 1666181 NP_884011.1 CDS rpmB NC_002928.3 1860441 1860677 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(1860441..1860677) Bordetella parapertussis 12822 1666182 NP_884012.1 CDS BPP1738 NC_002928.3 1861047 1862240 R ortholog of Bordetella pertussis (BX470248) BP2052; transmembrane transport protein complement(1861047..1862240) Bordetella parapertussis 12822 1666183 NP_884013.1 CDS BPP1739 NC_002928.3 1862400 1863665 D ortholog of Bordetella pertussis (BX470248) BP2053; cyclopropane-fatty-acyl-phospholipid synthase 1862400..1863665 Bordetella parapertussis 12822 1666046 NP_884014.1 CDS BPP1740 NC_002928.3 1864117 1865127 D ortholog of Bordetella pertussis (BX470248) BP2055; periplasmic substrate-binding protein 1864117..1865127 Bordetella parapertussis 12822 1666047 NP_884015.1 CDS BPP1741 NC_002928.3 1865300 1866157 D ortholog of Bordetella pertussis (BX470248) BP2056; binding-protein-dependent transport protein 1865300..1866157 Bordetella parapertussis 12822 1666048 NP_884016.1 CDS BPP1742 NC_002928.3 1866154 1867416 D ortholog of Bordetella pertussis (BX470248) BP2057; ABC transporter ATP-binding protein 1866154..1867416 Bordetella parapertussis 12822 1666049 NP_884017.1 CDS BPP1743 NC_002928.3 1867517 1867891 D ortholog of Bordetella pertussis (BX470248) BP2058; tautomerase 1867517..1867891 Bordetella parapertussis 12822 1665514 NP_884018.1 CDS BPP1744 NC_002928.3 1867940 1869145 D catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 1867940..1869145 Bordetella parapertussis 12822 1665515 NP_884019.1 CDS BPP1746 NC_002928.3 1870111 1870875 D ortholog of Bordetella pertussis (BX470248) BP2061; GntR family transcriptional regulator 1870111..1870875 Bordetella parapertussis 12822 1665517 NP_884020.1 CDS BPP1747 NC_002928.3 1870826 1872127 D ortholog of Bordetella pertussis (BX470248) BP2062; malonyl-CoA decarboxylase 1870826..1872127 Bordetella parapertussis 12822 1665518 NP_884021.1 CDS BPP1748 NC_002928.3 1872124 1872930 D ortholog of Bordetella pertussis (BX470248) BP2063; hypothetical protein 1872124..1872930 Bordetella parapertussis 12822 1665519 NP_884022.1 CDS BPP1749 NC_002928.3 1872936 1874477 D catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 1872936..1874477 Bordetella parapertussis 12822 1665520 NP_884023.1 CDS BPP1750 NC_002928.3 1874673 1875644 D ortholog of Bordetella pertussis (BX470248) BP2066; hypothetical protein 1874673..1875644 Bordetella parapertussis 12822 1664724 NP_884024.1 CDS BPP1751 NC_002928.3 1875729 1876313 D ortholog of Bordetella pertussis (BX470248) BP2067; superoxide dismutase 1875729..1876313 Bordetella parapertussis 12822 1664725 NP_884025.1 CDS BPP1752 NC_002928.3 1876472 1877446 D ortholog of Bordetella pertussis (BX470248) BP2068; hypothetical protein 1876472..1877446 Bordetella parapertussis 12822 1664726 NP_884026.1 CDS BPP1753 NC_002928.3 1877556 1878446 D ortholog of Bordetella pertussis (BX470248) BP2069; transmembrane component of ABC transporter 1877556..1878446 Bordetella parapertussis 12822 1664727 NP_884027.1 CDS BPP1754 NC_002928.3 1878448 1879242 D ortholog of Bordetella pertussis (BX470248) BP2070; ABC-transporter ATP-binding component 1878448..1879242 Bordetella parapertussis 12822 1664728 NP_884028.1 CDS BPP1755 NC_002928.3 1879268 1880077 R ortholog of Bordetella pertussis (BX470248) BP2071; molybdenum-binding protein complement(1879268..1880077) Bordetella parapertussis 12822 1664729 NP_884029.1 CDS BPP1756 NC_002928.3 1880188 1880778 D ortholog of Bordetella pertussis (BX470248) BP2072; lipoprotein 1880188..1880778 Bordetella parapertussis 12822 1664730 NP_884030.1 CDS BPP1757 NC_002928.3 1880789 1881967 D ortholog of Bordetella pertussis (BX470248) BP2073; hypothetical protein 1880789..1881967 Bordetella parapertussis 12822 1666334 NP_884031.1 CDS BPP1759 NC_002928.3 1882609 1883925 D ortholog of Bordetella pertussis (BX470248) BP2075; efflux system inner membrane protein 1882609..1883925 Bordetella parapertussis 12822 1666336 NP_884032.1 CDS BPP1761 NC_002928.3 1887200 1888699 D ortholog of Bordetella pertussis (BX470248) BP2077; efflux system outer membrane component 1887200..1888699 Bordetella parapertussis 12822 1666338 NP_884033.1 CDS pdxJ NC_002928.3 1888696 1889442 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1888696..1889442 Bordetella parapertussis 12822 1666339 NP_884034.1 CDS acpS NC_002928.3 1889527 1889988 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 1889527..1889988 Bordetella parapertussis 12822 1665893 NP_884035.1 CDS nagZ NC_002928.3 1889985 1891088 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1889985..1891088 Bordetella parapertussis 12822 1665894 NP_884036.1 CDS uvrC NC_002928.3 1891108 1892880 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1891108..1892880 Bordetella parapertussis 12822 1665895 NP_884037.1 CDS pgsA NC_002928.3 1892920 1893492 D ortholog of Bordetella pertussis (BX470248) BP2082; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1892920..1893492 Bordetella parapertussis 12822 1665896 NP_884038.1 CDS BPP1767 NC_002928.3 1893563 1894909 D ortholog of Bordetella pertussis (BX470248) BP2083; transmembrane transport protein 1893563..1894909 Bordetella parapertussis 12822 1667908 NP_884039.1 CDS queF NC_002928.3 1894916 1895737 R catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(1894916..1895737) Bordetella parapertussis 12822 1667909 NP_884040.1 CDS aceA NC_002928.3 1896056 1897378 D Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 1896056..1897378 Bordetella parapertussis 12822 1667910 NP_884041.1 CDS BPP1770 NC_002928.3 1897742 1898464 D ortholog of Bordetella pertussis (BX470248) BP2086; hypothetical protein 1897742..1898464 Bordetella parapertussis 12822 1667911 NP_884042.1 CDS BPP1771 NC_002928.3 1898475 1899218 R ortholog of Bordetella pertussis (BX470248) BP2160; hypothetical protein complement(1898475..1899218) Bordetella parapertussis 12822 1667912 NP_884043.1 CDS BPP1772 NC_002928.3 1899211 1899570 R ortholog of Bordetella pertussis (BX470248) BP2161; integral membrane protein complement(1899211..1899570) Bordetella parapertussis 12822 1667913 NP_884044.1 CDS BPP1773 NC_002928.3 1899558 1900994 R ortholog of Bordetella pertussis (BX470248) BP2162; biotin synthase complement(1899558..1900994) Bordetella parapertussis 12822 1667652 NP_884045.1 CDS BPP1774 NC_002928.3 1900991 1901644 R ortholog of Bordetella pertussis (BX470248) BP2163; hypothetical protein complement(1900991..1901644) Bordetella parapertussis 12822 1667653 NP_884046.1 CDS BPP1775 NC_002928.3 1901641 1902834 R ortholog of Bordetella pertussis (BX470248) BP2164; 8-amino-7-oxononanoate synthase complement(1901641..1902834) Bordetella parapertussis 12822 1667654 NP_884047.1 CDS bioA NC_002928.3 1902938 1904212 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1902938..1904212 Bordetella parapertussis 12822 1667655 NP_884048.1 CDS BPP1778 NC_002928.3 1905248 1905391 D ortholog of Bordetella pertussis (BX470248) BP2168; outer membrane protein 1905248..1905391 Bordetella parapertussis 12822 1667657 NP_884049.1 CDS BPP1779 NC_002928.3 1905432 1907003 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 1905432..1907003 Bordetella parapertussis 12822 1667658 NP_884050.1 CDS BPP1780 NC_002928.3 1907014 1907676 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 1907014..1907676 Bordetella parapertussis 12822 1667117 NP_884051.1 CDS BPP1780A NC_002928.3 1907679 1907855 D ortholog of Bordetella pertussis (BX470248) BP2171; Similar to Pseudomonas stutzeri cytochrome c oxidase subunit CcoQ SWALL:AAM76066 (EMBL:AF521004) (62 aa) fasta scores: E(): 0.0026, 38.88% id in 54 aa, and to Ralstonia solanacearum hypothetical signal peptide protein Rsc1278 or Rs02816 SWALL:Q8XZW7 (EMBL:AL646063) (60 aa) fasta scores: E(): 4.4e-07, 55.55% id in 45 aa; cytochrome C oxidase subunit 1907679..1907855 Bordetella parapertussis 12822 1667118 NP_884052.1 CDS BPP1781 NC_002928.3 1907852 1908790 D ortholog of Bordetella pertussis (BX470248) BP2172; cytochrome C oxidase subunit 1907852..1908790 Bordetella parapertussis 12822 1667119 NP_884053.1 CDS BPP1783 NC_002928.3 1910403 1910612 D ortholog of Bordetella pertussis (BX470248) BP2174; lipoprotein 1910403..1910612 Bordetella parapertussis 12822 1667567 NP_884054.1 CDS BPP1784 NC_002928.3 1910626 1910865 D ortholog of Bordetella pertussis (BX470248) BP2175; inner membrane protein 1910626..1910865 Bordetella parapertussis 12822 1667568 NP_884055.1 CDS BPP1785 NC_002928.3 1910961 1911704 D ortholog of Bordetella pertussis (BX470248) BP2176; inner membrane protein 1910961..1911704 Bordetella parapertussis 12822 1667569 NP_884056.1 CDS BPP1786 NC_002928.3 1911713 1912237 D ortholog of Bordetella pertussis (BX470248) BP2177; hypothetical protein 1911713..1912237 Bordetella parapertussis 12822 1667570 NP_884057.1 CDS BPP1787 NC_002928.3 1912264 1913259 D ortholog of Bordetella pertussis (BX470248) BP2178; ABC transporter ATP-binding subunit 1912264..1913259 Bordetella parapertussis 12822 1667571 NP_884058.1 CDS BPP1788 NC_002928.3 1913256 1914017 D ortholog of Bordetella pertussis (BX470248) BP2179; ABC transporter inner membrane subunit 1913256..1914017 Bordetella parapertussis 12822 1666184 NP_884059.1 CDS BPP1789 NC_002928.3 1914033 1915118 R ortholog of Bordetella pertussis (BX470248) BP2180; hypothetical protein complement(1914033..1915118) Bordetella parapertussis 12822 1666185 NP_884060.1 CDS BPP1790 NC_002928.3 1915216 1917291 R Similar to Pseudomonas aeruginosa hypothetical protein Pa1727 SWALL:Q9I310 (EMBL:AE004599) (685 aa) fasta scores: E(): 6.3e-169, 65% id in 683 aa, and to Ralstonia solanacearum probable transmembrane protein Rsc0510 or Rs04997 SWALL:Q8Y226 (EMBL:AL646059) (701 aa) fasta scores: E(): 8.7e-166, 65.15% id in 683 aa; signalling protein complement(1915216..1917291) Bordetella parapertussis 12822 1666186 NP_884061.1 CDS BPP1791 NC_002928.3 1917414 1918304 R Similar to Yersinia pestis probable LysR-family transcriptional regulator Ypo1929 SWALL:Q8ZF22 (EMBL:AJ414150) (292 aa) fasta scores: E(): 3.7e-46, 47.73% id in 287 aa, and to Salmonella typhimurium transcriptional regulator Stmr or Stm3121 SWALL:Q9RQ20 (EMBL:AF134978) (292 aa) fasta scores: E(): 2.2e-45, 45.2% id in 292 aa; LysR family transcriptional regulator complement(1917414..1918304) Bordetella parapertussis 12822 1666187 NP_884062.1 CDS BPP1792 NC_002928.3 1918414 1919709 D Similar to Ralstonia solanacearum transporter transmembrane protein Rsc3069 or Rs00513 SWALL:Q8XUW4 (EMBL:AL646073) (428 aa) fasta scores: E(): 5.4e-77, 55.34% id in 430 aa, and to Bacillus subtilis hypothetical transport protein YybF SWALL:YYBF_BACSU (SWALL:P37498) (404 aa) fasta scores: E(): 1.1e-58, 45.17% id in 394 aa; transporter 1918414..1919709 Bordetella parapertussis 12822 1665980 NP_884063.1 CDS BPP1793 NC_002928.3 1919808 1920020 R Similar to Pasteurella multocida hypothetical protein Pm1568 SWALL:Q9CKP1 (EMBL:AE006194) (70 aa) fasta scores: E(): 2.5e-12, 62.68% id in 67 aa, and to Campylobacter jejuni hypothetical protein Cj0449C SWALL:Q9PI59 (EMBL:AL139075) (71 aa) fasta scores: E(): 3.3e-09, 50% id in 68 aa; hypothetical protein complement(1919808..1920020) Bordetella parapertussis 12822 1665981 NP_884064.1 CDS BPP1794 NC_002928.3 1920195 1920605 D Similar to Pseudomonas aeruginosa probable ring-cleaving dioxygenase Pa2546 SWALL:Q9I0T8 (EMBL:AE004682) (143 aa) fasta scores: E(): 8.6e-24, 56.06% id in 132 aa, and to Agrobacterium tumefaciens glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein Atu1533 or Agr_c_2827 SWALL:AAL42538 (EMBL:AE009112) (146 aa) fasta scores: E(): 8.2e-14, 42.74% id in 131 aa; dioxygenase 1920195..1920605 Bordetella parapertussis 12822 1665982 NP_884065.1 CDS BPP1795 NC_002928.3 1920848 1921711 R ortholog of Bordetella pertussis (BX470248) BP1178; hypothetical protein complement(1920848..1921711) Bordetella parapertussis 12822 1665983 NP_884066.1 CDS BPP1796 NC_002928.3 1922057 1923070 R ortholog of Bordetella pertussis (BX470248) BP1180; LysR family transcriptional regulator complement(1922057..1923070) Bordetella parapertussis 12822 1665984 NP_884067.1 CDS glnQ NC_002928.3 1923105 1923842 R ortholog of Bordetella pertussis (BX470248) BP1181; amino acids ABC transporter ATP-binding protein complement(1923105..1923842) Bordetella parapertussis 12822 1665985 NP_884068.1 CDS BPP1798 NC_002928.3 1923862 1924551 R ortholog of Bordetella pertussis (BX470248) BP1182; amino acids ABC transporter permease complement(1923862..1924551) Bordetella parapertussis 12822 1668326 NP_884069.1 CDS BPP1799 NC_002928.3 1924544 1925233 R ortholog of Bordetella pertussis (BX470248) BP1183; amino acids ABC transporter permease complement(1924544..1925233) Bordetella parapertussis 12822 1668327 NP_884070.1 CDS BPP1800 NC_002928.3 1925337 1926053 R ortholog of Bordetella pertussis (BX470248) BP1184; solute-binding protein complement(1925337..1926053) Bordetella parapertussis 12822 1668328 NP_884071.1 CDS aspC NC_002928.3 1926216 1927418 R ortholog of Bordetella pertussis (BX470248) BP1185; aspartate aminotransferase complement(1926216..1927418) Bordetella parapertussis 12822 1668329 NP_884072.1 CDS BPP1802 NC_002928.3 1927415 1928095 R ortholog of Bordetella pertussis (BX470248) BP1186; hypothetical protein complement(1927415..1928095) Bordetella parapertussis 12822 1668330 NP_884073.1 CDS BPP1803 NC_002928.3 1928732 1929616 D ortholog of Bordetella pertussis (BX470248) BP1188; hypothetical protein 1928732..1929616 Bordetella parapertussis 12822 1668331 NP_884074.1 CDS BPP1804 NC_002928.3 1929628 1929846 D ortholog of Bordetella pertussis (BX470248) BP1188A; hypothetical protein 1929628..1929846 Bordetella parapertussis 12822 1668332 NP_884075.1 CDS BPP1805 NC_002928.3 1929854 1930282 R ortholog of Bordetella pertussis (BX470248) BP1189; lipoprotein complement(1929854..1930282) Bordetella parapertussis 12822 1668333 NP_884076.1 CDS BPP1806 NC_002928.3 1930470 1930955 D ortholog of Bordetella pertussis (BX470248) BP1190; hypothetical protein 1930470..1930955 Bordetella parapertussis 12822 1665135 NP_884077.1 CDS BPP1807 NC_002928.3 1930948 1931853 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigJ 1930948..1931853 Bordetella parapertussis 12822 1665136 NP_884078.1 CDS BPP1808 NC_002928.3 1931998 1932324 D ortholog of Bordetella pertussis (BX470248) BP1192; hypothetical protein 1931998..1932324 Bordetella parapertussis 12822 1665137 NP_884079.1 CDS BPP1809 NC_002928.3 1932349 1932567 D ortholog of Bordetella pertussis (BX470248) BP1193; hypothetical protein 1932349..1932567 Bordetella parapertussis 12822 1665138 NP_884080.1 CDS BPP1810 NC_002928.3 1932617 1933234 D ortholog of Bordetella pertussis (BX470248) BP1194; hypothetical protein 1932617..1933234 Bordetella parapertussis 12822 1665139 NP_884081.1 CDS BPP1811 NC_002928.3 1933231 1933572 D ortholog of Bordetella pertussis (BX470248) BP1195; ferredoxin 1933231..1933572 Bordetella parapertussis 12822 1665140 NP_884082.1 CDS BPP1812 NC_002928.3 1933609 1934763 R ortholog of Bordetella pertussis (BX470248) BP1196; hypothetical protein complement(1933609..1934763) Bordetella parapertussis 12822 1665141 NP_884083.1 CDS btr NC_002928.3 1934760 1935488 R ortholog of Bordetella pertussis (BX470248) BP1197; transcriptional regulatory protein complement(1934760..1935488) Bordetella parapertussis 12822 1665142 NP_884084.1 CDS clpB NC_002928.3 1935811 1938408 D ortholog of Bordetella pertussis (BX470248) BP1198; ATP-dependent protease, ATPase subunit 1935811..1938408 Bordetella parapertussis 12822 1665973 NP_884085.1 CDS bapB NC_002928.3 1938725 1940542 D ortholog of Bordetella pertussis (BX470248) BP1200; autotransporter 1938725..1940542 Bordetella parapertussis 12822 1665974 NP_884086.1 CDS BPP1816 NC_002928.3 1940607 1941290 R ortholog of Bordetella pertussis (BX470248) BP1202; TetR family transcriptional regulator complement(1940607..1941290) Bordetella parapertussis 12822 1665975 NP_884087.1 CDS BPP1817 NC_002928.3 1941454 1942662 D ortholog of Bordetella pertussis (BX470248) BP1203; hypothetical protein 1941454..1942662 Bordetella parapertussis 12822 1665976 NP_884088.1 CDS BPP1818 NC_002928.3 1942672 1943502 D ortholog of Bordetella pertussis (BX470248) BP1204; hypothetical protein 1942672..1943502 Bordetella parapertussis 12822 1665977 NP_884089.1 CDS BPP1819 NC_002928.3 1943570 1944022 D ortholog of Bordetella pertussis (BX470248) BP1205; hypothetical protein 1943570..1944022 Bordetella parapertussis 12822 1665978 NP_884090.1 CDS BPP1820 NC_002928.3 1944030 1944992 R ortholog of Bordetella pertussis (BX470248) BP1206; LysR family transcriptional regulator complement(1944030..1944992) Bordetella parapertussis 12822 1665979 NP_884091.1 CDS BPP1821 NC_002928.3 1945097 1946539 D ortholog of Bordetella pertussis (BX470248) BP1207; N-acyl-D-glutamate deacylase 1945097..1946539 Bordetella parapertussis 12822 1665473 NP_884092.1 CDS BPP1822 NC_002928.3 1946569 1947543 D ortholog of Bordetella pertussis (BX470248) BP1208; hypothetical protein 1946569..1947543 Bordetella parapertussis 12822 1665474 NP_884093.1 CDS BPP1823 NC_002928.3 1947559 1948938 R ortholog of Bordetella pertussis (BX470248) BP1209; oxidoreductase complement(1947559..1948938) Bordetella parapertussis 12822 1665475 NP_884094.1 CDS BPP1825 NC_002928.3 1949960 1950760 R ortholog of Bordetella pertussis (BX470248) BP1211; hypothetical protein complement(1949960..1950760) Bordetella parapertussis 12822 1665477 NP_884095.1 CDS BPP1826 NC_002928.3 1950790 1951305 R ortholog of Bordetella pertussis (BX470248) BP1212; hypothetical protein complement(1950790..1951305) Bordetella parapertussis 12822 1665478 NP_884096.1 CDS BPP1827 NC_002928.3 1951328 1951957 R ortholog of Bordetella pertussis (BX470248) BP1213; hypothetical protein complement(1951328..1951957) Bordetella parapertussis 12822 1665479 NP_884097.1 CDS nodI NC_002928.3 1952036 1953052 D ortholog of Bordetella pertussis (BX470248) BP1214; ABC, transporter, ATP-binding protein 1952036..1953052 Bordetella parapertussis 12822 1665480 NP_884098.1 CDS BPP1830 NC_002928.3 1953933 1954493 D ortholog of Bordetella pertussis (BX470248) BP1216; hypothetical protein 1953933..1954493 Bordetella parapertussis 12822 1666481 NP_884099.1 CDS ccrB NC_002928.3 1954503 1954883 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1954503..1954883 Bordetella parapertussis 12822 1666482 NP_884100.1 CDS BPP1832 NC_002928.3 1954906 1956237 R ortholog of Bordetella pertussis (BX470248) BP1218; hypothetical protein complement(1954906..1956237) Bordetella parapertussis 12822 1666483 NP_884101.1 CDS BPP1833 NC_002928.3 1956234 1957097 R ortholog of Bordetella pertussis (BX470248) BP1219; phytoene synthase complement(1956234..1957097) Bordetella parapertussis 12822 1667452 NP_884102.1 CDS BPP1834 NC_002928.3 1957099 1957929 R ortholog of Bordetella pertussis (BX470248) BP1220; phytoene synthase complement(1957099..1957929) Bordetella parapertussis 12822 1667453 NP_884103.1 CDS dadX NC_002928.3 1958058 1959185 D ortholog of Bordetella pertussis (BX470248) BP1221; alanine racemase, catabolic 1958058..1959185 Bordetella parapertussis 12822 1667454 NP_884104.1 CDS BPP1836 NC_002928.3 1959319 1960011 D ortholog of Bordetella pertussis (BX470248) BP1222; short chain dehydrogenase 1959319..1960011 Bordetella parapertussis 12822 1667455 NP_884105.1 CDS BPP1837 NC_002928.3 1960067 1960789 R ortholog of Bordetella pertussis (BX470248) BP1223; hypothetical protein complement(1960067..1960789) Bordetella parapertussis 12822 1667456 NP_884106.2 CDS BPP1838 NC_002928.3 1960793 1961371 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1960793..1961371) Bordetella parapertussis 12822 1667457 NP_884107.1 CDS BPP1839 NC_002928.3 1961449 1963164 R ortholog of Bordetella pertussis (BX470248) BP1226; hypothetical protein complement(1961449..1963164) Bordetella parapertussis 12822 1667458 NP_884108.1 CDS radA NC_002928.3 1963291 1964652 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1963291..1964652 Bordetella parapertussis 12822 1667459 NP_884109.1 CDS BPP1841 NC_002928.3 1964675 1965448 D ortholog of Bordetella pertussis (BX470248) BP1228; hypothetical protein 1964675..1965448 Bordetella parapertussis 12822 1667460 NP_884110.1 CDS BPP1842 NC_002928.3 1965607 1965834 D ortholog of Bordetella pertussis (BX470248) BP1229; hypothetical protein 1965607..1965834 Bordetella parapertussis 12822 1666593 NP_884111.1 CDS BPP1844 NC_002928.3 1966792 1967742 D transposase for IS1002 element; IS1002 transposase 1966792..1967742 Bordetella parapertussis 12822 1666595 NP_884112.1 CDS BPP1846 NC_002928.3 1968342 1970078 R ortholog of Bordetella pertussis (BX470248) BP1231; hypothetical protein complement(1968342..1970078) Bordetella parapertussis 12822 1666596 NP_884113.1 CDS rpmE2 NC_002928.3 1970194 1970460 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(1970194..1970460) Bordetella parapertussis 12822 1665152 NP_884114.1 CDS BPP1848 NC_002928.3 1970629 1971483 R ortholog of Bordetella pertussis (BX470248) BP1233; tryptophan oxygenase complement(1970629..1971483) Bordetella parapertussis 12822 1665153 NP_884115.1 CDS radC NC_002928.3 1972227 1972904 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(1972227..1972904) Bordetella parapertussis 12822 1665155 NP_884116.1 CDS fkpB NC_002928.3 1972957 1973433 D ortholog of Bordetella pertussis (BX470248) BP1236; FkbP-type peptidyl-prolyl cis-trans isomerase 1972957..1973433 Bordetella parapertussis 12822 1665156 NP_884117.1 CDS ispH NC_002928.3 1973430 1974410 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1973430..1974410 Bordetella parapertussis 12822 1665157 NP_884118.1 CDS BPP1853 NC_002928.3 1974407 1975093 D ortholog of Bordetella pertussis (BX470248) BP1238; glutathione-S-transferase 1974407..1975093 Bordetella parapertussis 12822 1665158 NP_884119.1 CDS BPP1854 NC_002928.3 1975585 1975920 R ortholog of Bordetella pertussis (BX470248) BP1239; hypothetical protein complement(1975585..1975920) Bordetella parapertussis 12822 1665159 NP_884120.1 CDS BPP1856 NC_002928.3 1977186 1977764 R ortholog of Bordetella pertussis (BX470248) BP1241; hypothetical protein complement(1977186..1977764) Bordetella parapertussis 12822 1666711 NP_884121.1 CDS BPP1857 NC_002928.3 1977881 1978792 D ortholog of Bordetella pertussis (BX470248) BP1242; LysR family transcriptional regulator 1977881..1978792 Bordetella parapertussis 12822 1666712 NP_884122.1 CDS BPP1858 NC_002928.3 1979755 1980849 D ortholog of Bordetella pertussis (BX470248) BP1243; hypothetical protein 1979755..1980849 Bordetella parapertussis 12822 1666713 NP_884123.1 CDS BPP1859 NC_002928.3 1980846 1982624 D ortholog of Bordetella pertussis (BX470248) BP1244; hypothetical protein 1980846..1982624 Bordetella parapertussis 12822 1666714 NP_884124.1 CDS BPP1860 NC_002928.3 1983089 1983595 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1983089..1983595 Bordetella parapertussis 12822 1664676 NP_884125.1 CDS nusA NC_002928.3 1983592 1985070 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1983592..1985070 Bordetella parapertussis 12822 1664677 NP_884126.1 CDS infB NC_002928.3 1985147 1988056 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1985147..1988056 Bordetella parapertussis 12822 1664678 NP_884127.1 CDS rbfA NC_002928.3 1988084 1988485 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1988084..1988485 Bordetella parapertussis 12822 1664679 NP_884128.1 CDS truB NC_002928.3 1988530 1989264 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1988530..1989264 Bordetella parapertussis 12822 1664680 NP_884129.1 CDS typA NC_002928.3 1989281 1991101 D ortholog of Bordetella pertussis (BX470248) BP1250; GTP-binding elongation factor 1989281..1991101 Bordetella parapertussis 12822 1664681 NP_884130.1 CDS BPP1866 NC_002928.3 1991172 1991897 R ortholog of Bordetella pertussis (BX470248) BP1251; toxin complement(1991172..1991897) Bordetella parapertussis 12822 1665043 NP_884131.1 CDS BPP1867 NC_002928.3 1991894 1992310 R ortholog of Bordetella pertussis (BX470248) BP1252; hypothetical protein complement(1991894..1992310) Bordetella parapertussis 12822 1665044 NP_884132.1 CDS BPP1868 NC_002928.3 1992459 1993031 R ortholog of Bordetella pertussis (BX470248) BP1253; hypothetical protein complement(1992459..1993031) Bordetella parapertussis 12822 1665045 NP_884133.1 CDS polA NC_002928.3 1993141 1995855 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 1993141..1995855 Bordetella parapertussis 12822 1665046 NP_884134.1 CDS BPP1870 NC_002928.3 1995966 1996802 D ortholog of Bordetella pertussis (BX470248) BP1255; hypothetical protein 1995966..1996802 Bordetella parapertussis 12822 1665047 NP_884135.1 CDS BPP1871 NC_002928.3 1996857 1997645 D ortholog of Bordetella pertussis (BX470248) BP1256; carboxymethylenebutenolidase 1996857..1997645 Bordetella parapertussis 12822 1665048 NP_884136.1 CDS BPP1872 NC_002928.3 1997679 1999337 R ortholog of Bordetella pertussis (BX470248) BP1257; hypothetical protein complement(1997679..1999337) Bordetella parapertussis 12822 1665049 NP_884137.1 CDS sdaA NC_002928.3 1999499 2000896 D ortholog of Bordetella pertussis (BX470248) BP1258; L-serine dehydratase 1 1999499..2000896 Bordetella parapertussis 12822 1665941 NP_884138.1 CDS BPP1874 NC_002928.3 2001087 2001746 R ortholog of Bordetella pertussis (BX470248) BP1259; hypothetical protein complement(2001087..2001746) Bordetella parapertussis 12822 1665942 NP_884139.1 CDS glnE NC_002928.3 2001782 2004607 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(2001782..2004607) Bordetella parapertussis 12822 1665943 NP_884140.1 CDS BPP1876 NC_002928.3 2004641 2008300 D ortholog of Bordetella pertussis (BX470248) BP1261; hypothetical protein 2004641..2008300 Bordetella parapertussis 12822 1665944 NP_884141.1 CDS rho NC_002928.3 2008368 2009624 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(2008368..2009624) Bordetella parapertussis 12822 1665945 NP_884142.1 CDS trxA NC_002928.3 2009737 2010162 R ortholog of Bordetella pertussis (BX470248) BP1263; thioredoxin 1 complement(2009737..2010162) Bordetella parapertussis 12822 1665946 NP_884143.1 CDS parE NC_002928.3 2010305 2012317 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 2010305..2012317 Bordetella parapertussis 12822 1667421 NP_884144.1 CDS BPP1880 NC_002928.3 2012317 2012928 D ortholog of Bordetella pertussis (BX470248) BP1265; hypothetical protein 2012317..2012928 Bordetella parapertussis 12822 1667422 NP_884145.1 CDS parC NC_002928.3 2012946 2015261 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 2012946..2015261 Bordetella parapertussis 12822 1667423 NP_884146.1 CDS BPP1882 NC_002928.3 2015264 2016475 D ortholog of Bordetella pertussis (BX470248) BP1267; hypothetical protein 2015264..2016475 Bordetella parapertussis 12822 1667424 NP_884147.1 CDS BPP1883 NC_002928.3 2016472 2019072 R ortholog of Bordetella pertussis (BX470248) BP2220; inner membrane protein complement(2016472..2019072) Bordetella parapertussis 12822 1667425 NP_884148.1 CDS BPP1884 NC_002928.3 2019179 2020183 R ortholog of Bordetella pertussis (BX470248) BP2219; cell surface protein complement(2019179..2020183) Bordetella parapertussis 12822 1667966 NP_884149.1 CDS BPP1885 NC_002928.3 2020292 2021632 R ortholog of Bordetella pertussis (BX470248) BP2218; hypothetical protein complement(2020292..2021632) Bordetella parapertussis 12822 1667967 NP_884150.1 CDS BPP1886 NC_002928.3 2021673 2022701 R ortholog of Bordetella pertussis (BX470248) BP2217; SIS family regulator complement(2021673..2022701) Bordetella parapertussis 12822 1667968 NP_884151.1 CDS BPP1887 NC_002928.3 2022831 2023442 D ortholog of Bordetella pertussis (BX470248) BP2216; MarR family transcriptional regulator 2022831..2023442 Bordetella parapertussis 12822 1667969 NP_884152.1 CDS ectA NC_002928.3 2023439 2023999 D ortholog of Bordetella pertussis (BX470248) BP2215; L-2,4-diaminobutyric acid acetyltransferase 2023439..2023999 Bordetella parapertussis 12822 1667970 NP_884153.1 CDS ectB NC_002928.3 2024110 2025417 D catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 2024110..2025417 Bordetella parapertussis 12822 1667971 NP_884154.1 CDS ectC NC_002928.3 2025414 2025809 D N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; L-ectoine synthase 2025414..2025809 Bordetella parapertussis 12822 1667972 NP_884155.1 CDS BPP1891 NC_002928.3 2025828 2026754 D Similar to Dactylosporangium sp L-proline 4-hydroxylase SWALL:O06499 (EMBL:D78338) (272 aa) fasta scores: E(): 4.8e-23, 35.18% id in 270 aa, and to Streptomyces coelicolor hydroxylase sci39.14 SWALL:Q93RV9 (EMBL:AL591322) (280 aa) fasta scores: E(): 9.9e-56, 51.62% id in 277 aa; L-proline 4-hydroxylase 2025828..2026754 Bordetella parapertussis 12822 1664731 NP_884156.1 CDS kdgT NC_002928.3 2027006 2028028 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 2027006..2028028 Bordetella parapertussis 12822 1664732 NP_884157.1 CDS BPP1893 NC_002928.3 2028029 2029246 D ortholog of Bordetella pertussis (BX470248) BP1812; hypothetical protein 2028029..2029246 Bordetella parapertussis 12822 1664733 NP_884158.1 CDS pdxA NC_002928.3 2029243 2030298 D ortholog of Bordetella pertussis (BX470248) BP1813; pyridoxal phosphate biosynthetic protein 2029243..2030298 Bordetella parapertussis 12822 1664734 NP_884159.1 CDS BPP1895 NC_002928.3 2030303 2031205 D ortholog of Bordetella pertussis (BX470248) BP1814; GntR family transcriptional regulator 2030303..2031205 Bordetella parapertussis 12822 1664735 NP_884160.1 CDS BPP1897 NC_002928.3 2031902 2032852 R transposase for IS1002 element; IS1002 transposase complement(2031902..2032852) Bordetella parapertussis 12822 1664737 NP_884161.1 CDS panD NC_002928.3 2033310 2033678 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 2033310..2033678 Bordetella parapertussis 12822 1664738 NP_884162.1 CDS ascD NC_002928.3 2033685 2034782 D catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 2033685..2034782 Bordetella parapertussis 12822 1664739 NP_884163.1 CDS dadA NC_002928.3 2034978 2036234 D ortholog of Bordetella pertussis (BX470248) BP1818; D-amino acid dehydrogenase small subunit 2034978..2036234 Bordetella parapertussis 12822 1667109 NP_884164.1 CDS ugpB NC_002928.3 2036239 2037576 D ortholog of Bordetella pertussis (BX470248) BP1819; glycerol-3-phosphate-binding periplasmic protein precursor 2036239..2037576 Bordetella parapertussis 12822 1667110 NP_884165.1 CDS BPP1903 NC_002928.3 2037709 2038929 D transposase for IS1001 element; transposase 2037709..2038929 Bordetella parapertussis 12822 1667111 NP_884166.1 CDS BPP1904 NC_002928.3 2039328 2039591 D ortholog of Bordetella pertussis (BX470248) BP2530; integral membrane protein 2039328..2039591 Bordetella parapertussis 12822 1667112 NP_884167.1 CDS BPP1905 NC_002928.3 2039588 2040904 D ortholog of Bordetella pertussis (BX470248) BP2529; hypothetical protein 2039588..2040904 Bordetella parapertussis 12822 1667113 NP_884168.1 CDS BPP1906 NC_002928.3 2040901 2041524 D ortholog of Bordetella pertussis (BX470248) BP2528A; hypothetical protein 2040901..2041524 Bordetella parapertussis 12822 1667114 NP_884169.1 CDS BPP1907 NC_002928.3 2041521 2042189 D ortholog of Bordetella pertussis (BX470248) BP2528; hypothetical protein 2041521..2042189 Bordetella parapertussis 12822 1667115 NP_884170.1 CDS BPP1909 NC_002928.3 2043016 2044428 D ortholog of Bordetella pertussis (BX470248) BP2526; secretory apparatus 2043016..2044428 Bordetella parapertussis 12822 1667498 NP_884171.1 CDS BPP1910 NC_002928.3 2044425 2046041 D ortholog of Bordetella pertussis (BX470248) BP2525A; secretory protein 2044425..2046041 Bordetella parapertussis 12822 1667499 NP_884172.1 CDS BPP1911 NC_002928.3 2046038 2046883 D ortholog of Bordetella pertussis (BX470248) BP2525; hypothetical protein 2046038..2046883 Bordetella parapertussis 12822 1667500 NP_884173.1 CDS BPP1912 NC_002928.3 2046894 2047790 D ortholog of Bordetella pertussis (BX470248) BP2524A+BP1081; hypothetical protein 2046894..2047790 Bordetella parapertussis 12822 1667501 NP_884174.1 CDS BPP1913 NC_002928.3 2048012 2048812 R ortholog of Bordetella pertussis (BX470248) BP1083; hypothetical protein complement(2048012..2048812) Bordetella parapertussis 12822 1667502 NP_884175.1 CDS thrB NC_002928.3 2048856 2049842 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase complement(2048856..2049842) Bordetella parapertussis 12822 1667754 NP_884176.1 CDS BPP1915 NC_002928.3 2049982 2050995 D ortholog of Bordetella pertussis (BX470248) BP1085; tRNA-dihydrouridine synthase A 2049982..2050995 Bordetella parapertussis 12822 1667755 NP_884177.1 CDS BPP1916 NC_002928.3 2050992 2051465 R ortholog of Bordetella pertussis (BX470248) BP1087; hypothetical protein complement(2050992..2051465) Bordetella parapertussis 12822 1667756 NP_884178.1 CDS BPP1917 NC_002928.3 2051502 2052815 R ortholog of Bordetella pertussis (BX470248) BP1088; hypothetical protein complement(2051502..2052815) Bordetella parapertussis 12822 1667757 NP_884179.1 CDS BPP1918 NC_002928.3 2052833 2053204 D ortholog of Bordetella pertussis (BX470248) BP1089; hypothetical protein 2052833..2053204 Bordetella parapertussis 12822 1667758 NP_884180.1 CDS BPP1919 NC_002928.3 2053201 2054688 D ortholog of Bordetella pertussis (BX470248) BP1090; hypothetical protein 2053201..2054688 Bordetella parapertussis 12822 1667759 NP_884181.1 CDS BPP1920 NC_002928.3 2054781 2055557 D ortholog of Bordetella pertussis (BX470248) BP1091; two-component response regulator 2054781..2055557 Bordetella parapertussis 12822 1667760 NP_884182.1 CDS BPP1921 NC_002928.3 2055539 2058421 R ortholog of Bordetella pertussis (BX470248) BP1092; two-component histidine kinase complement(2055539..2058421) Bordetella parapertussis 12822 1667761 NP_884183.1 CDS BPP1922 NC_002928.3 2058641 2060017 D ortholog of Bordetella pertussis (BX470248) BP1460; hypothetical protein 2058641..2060017 Bordetella parapertussis 12822 1664875 NP_884184.1 CDS aroC NC_002928.3 2060059 2061120 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2060059..2061120 Bordetella parapertussis 12822 1664876 NP_884185.1 CDS BPP1924 NC_002928.3 2061154 2061990 D ortholog of Bordetella pertussis (BX470248) BP1463; lipoprotein 2061154..2061990 Bordetella parapertussis 12822 1664877 NP_884186.1 CDS mobB NC_002928.3 2062000 2062542 R ortholog of Bordetella pertussis (BX470248) BP1464; molybdopterin-guanine dinucleotide biosynthesis protein B complement(2062000..2062542) Bordetella parapertussis 12822 1664878 NP_884187.1 CDS moeA NC_002928.3 2062556 2063848 R ortholog of Bordetella pertussis (BX470248) BP1465; molybdopterin biosynthesis protein complement(2062556..2063848) Bordetella parapertussis 12822 1664879 NP_884188.1 CDS mobA NC_002928.3 2063845 2064453 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(2063845..2064453) Bordetella parapertussis 12822 1664880 NP_884189.1 CDS BPP1928 NC_002928.3 2064590 2065687 D ortholog of Bordetella pertussis (BX470248) BP1467; iron sulfur binding protein 2064590..2065687 Bordetella parapertussis 12822 1666402 NP_884190.1 CDS BPP1929 NC_002928.3 2065694 2066254 D ortholog of Bordetella pertussis (BX470248) BP1468; hypothetical protein 2065694..2066254 Bordetella parapertussis 12822 1666403 NP_884191.1 CDS BPP1930 NC_002928.3 2066251 2066931 D ortholog of Bordetella pertussis (BX470248) BP1469; hypothetical protein 2066251..2066931 Bordetella parapertussis 12822 1666404 NP_884192.1 CDS BPP1931 NC_002928.3 2066928 2069045 D ortholog of Bordetella pertussis (BX470248) BP1470; iron-sulfur binding protein 2066928..2069045 Bordetella parapertussis 12822 1666405 NP_884193.1 CDS BPP1932 NC_002928.3 2069042 2069671 D ortholog of Bordetella pertussis (BX470248) BP1471; hypothetical protein 2069042..2069671 Bordetella parapertussis 12822 1666972 NP_884194.1 CDS fdhA NC_002928.3 2070047 2073016 D ortholog of Bordetella pertussis (BX470248) BP1472; formate dehydrogenase large subunit 2070047..2073016 Bordetella parapertussis 12822 1666973 NP_884195.1 CDS fdhB NC_002928.3 2073027 2073656 D ortholog of Bordetella pertussis (BX470248) BP1473; formate dehydrogenase iron-sulfur subunit 2073027..2073656 Bordetella parapertussis 12822 1666974 NP_884196.1 CDS BPP1935 NC_002928.3 2073653 2073886 D ortholog of Bordetella pertussis (BX470248) BP1474; lipoprotein 2073653..2073886 Bordetella parapertussis 12822 1666975 NP_884197.1 CDS fdhC NC_002928.3 2073899 2075056 D ortholog of Bordetella pertussis (BX470248) BP1475; formate dehydrogenase subunit C precursor 2073899..2075056 Bordetella parapertussis 12822 1666976 NP_884198.1 CDS BPP1937 NC_002928.3 2075079 2075453 D ortholog of Bordetella pertussis (BX470248) BP1476; hypothetical protein 2075079..2075453 Bordetella parapertussis 12822 1666977 NP_884199.1 CDS BPP1938 NC_002928.3 2075487 2076602 R ortholog of Bordetella pertussis (BX470248) BP1477; hypothetical protein complement(2075487..2076602) Bordetella parapertussis 12822 1666978 NP_884200.1 CDS BPP1939 NC_002928.3 2076764 2077501 D ortholog of Bordetella pertussis (BX470248) BP1478; permease of ABC transporter 2076764..2077501 Bordetella parapertussis 12822 1666979 NP_884201.1 CDS BPP1940 NC_002928.3 2077498 2078202 D ortholog of Bordetella pertussis (BX470248) BP1479; ABC transporter ATP-binding protein 2077498..2078202 Bordetella parapertussis 12822 1666980 NP_884202.1 CDS BPP1941 NC_002928.3 2078199 2079017 D ortholog of Bordetella pertussis (BX470248) BP1480; hypothetical protein 2078199..2079017 Bordetella parapertussis 12822 1667679 NP_884203.1 CDS leuC NC_002928.3 2079271 2080704 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2079271..2080704 Bordetella parapertussis 12822 1667680 NP_884204.2 CDS leuD NC_002928.3 2080719 2081369 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2080719..2081369 Bordetella parapertussis 12822 1667681 NP_884205.1 CDS leuB NC_002928.3 2081424 2082527 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2081424..2082527 Bordetella parapertussis 12822 1667682 NP_884206.1 CDS asd NC_002928.3 2082714 2083844 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 2082714..2083844 Bordetella parapertussis 12822 1667683 NP_884207.1 CDS BPP1946 NC_002928.3 2083895 2085679 D ortholog of Bordetella pertussis (BX470248) BP1485; hypothetical protein 2083895..2085679 Bordetella parapertussis 12822 1667684 NP_884208.1 CDS truA NC_002928.3 2085683 2086495 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2085683..2086495 Bordetella parapertussis 12822 1667685 NP_884209.1 CDS smoM NC_002928.3 2086640 2087734 D ortholog of Bordetella pertussis (BX470248) BP1487; periplasmic solute-binding protein 2086640..2087734 Bordetella parapertussis 12822 1667686 NP_884210.1 CDS BPP1949 NC_002928.3 2087946 2088575 D ortholog of Bordetella pertussis (BX470248) BP1488; hypothetical protein 2087946..2088575 Bordetella parapertussis 12822 1666492 NP_884211.1 CDS BPP1950 NC_002928.3 2088578 2090245 D ortholog of Bordetella pertussis (BX470248) BP1489; hypothetical protein 2088578..2090245 Bordetella parapertussis 12822 1666493 NP_884212.1 CDS trpF NC_002928.3 2090260 2090916 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 2090260..2090916 Bordetella parapertussis 12822 1666494 NP_884213.1 CDS BPP1953 NC_002928.3 2091210 2091488 R Similar to Yersinia pestis hypothetical protein Ypo1882 SWALL:Q8ZF36 (EMBL:AJ414150) (96 aa) fasta scores: E(): 2.8e-10, 48.78% id in 82 aa, and to Xylella fastidiosa hypothetical protein Xf1563 SWALL:Q9PD17 (EMBL:AE003986) (112 aa) fasta scores: E(): 9e-07, 44.57% id in 83 aa; hypothetical protein complement(2091210..2091488) Bordetella parapertussis 12822 1666495 NP_884214.1 CDS BPP1954 NC_002928.3 2091475 2091741 R Similar to Xylella fastidiosa hypothetical protein Xf1562 SWALL:Q9PD18 (EMBL:AE003986) (88 aa) fasta scores: E(): 1.4e-15, 51.76% id in 85 aa, and to Neisseria meningitidis hypothetical protein Nmb1118 SWALL:Q9JZC2 (EMBL:AE002461) (95 aa) fasta scores: E(): 8.4e-11, 46.59% id in 88 aa; hypothetical protein complement(2091475..2091741) Bordetella parapertussis 12822 1666496 NP_884215.1 CDS BPP1955 NC_002928.3 2091972 2093513 R Similar to Rhizobium loti hypothetical protein Mlr6294 SWALL:Q989S9 (EMBL:AP003008) (525 aa) fasta scores: E(): 8.7e-25, 28.21% id in 514 aa, and to Agrobacterium tumefaciens hypothetical protein Atu3928 or Agr_l_1835 SWALL:AAL44736 (EMBL:AE009323) (492 aa) fasta scores: E(): 1.1e-24, 27.18% id in 434 aa; hypothetical protein complement(2091972..2093513) Bordetella parapertussis 12822 1666497 NP_884216.1 CDS BPP1956 NC_002928.3 2093575 2094555 R Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 1.2e-36, 34.07% id in 314 aa, and to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 3.6e-39, 35.06% id in 328 aa; hypothetical protein complement(2093575..2094555) Bordetella parapertussis 12822 1666498 NP_884217.1 CDS BPP1957 NC_002928.3 2094850 2095482 D Similar to Ralstonia solanacearum hypothetical protein Rsp1517 or Rs04794 SWALL:Q8XPW9 (EMBL:AL646085) (214 aa) fasta scores: E(): 2.5e-32, 50% id in 202 aa, and to Streptomyces coelicolor hypothetical 23.9 kDa protein Scf43a.12C SWALL:Q9XAA3 (EMBL:AL096837) (226 aa) fasta scores: E(): 2.5e-14, 32.68% id in 205 aa; hypothetical protein 2094850..2095482 Bordetella parapertussis 12822 1667914 NP_884218.1 CDS aqpZ NC_002928.3 2095593 2096303 D porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 2095593..2096303 Bordetella parapertussis 12822 1667915 NP_884219.1 CDS BPP1959 NC_002928.3 2096342 2096614 R Similar to Haemophilus influenzae hypothetical protein Hi1406 SWALL:YE06_HAEIN (SWALL:P44181) (118 aa) fasta scores: E(): 1.6, 26.66% id in 90 aa; hypothetical protein complement(2096342..2096614) Bordetella parapertussis 12822 1667916 NP_884220.1 CDS hemN NC_002928.3 2096774 2098198 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2096774..2098198 Bordetella parapertussis 12822 1667917 NP_884221.1 CDS BPP1961 NC_002928.3 2098195 2098587 R ortholog of Bordetella pertussis (BX470248) BP1495; hypothetical protein complement(2098195..2098587) Bordetella parapertussis 12822 1667918 NP_884222.1 CDS BPP1962 NC_002928.3 2098593 2099405 R ortholog of Bordetella pertussis (BX470248) BP1496; two-component response regulator complement(2098593..2099405) Bordetella parapertussis 12822 1667919 NP_884223.1 CDS thrS NC_002928.3 2099757 2101706 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2099757..2101706 Bordetella parapertussis 12822 1667920 NP_884224.1 CDS infC NC_002928.3 2101778 2102272 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2101778..2102272 Bordetella parapertussis 12822 1666937 NP_884225.1 CDS gshB NC_002928.3 2102409 2103365 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 2102409..2103365 Bordetella parapertussis 12822 1666938 NP_884226.1 CDS BPP1966 NC_002928.3 2103376 2103774 D ortholog of Bordetella pertussis (BX470248) BP1500; IIA component of sugar transport PTS system 2103376..2103774 Bordetella parapertussis 12822 1666939 NP_884227.1 CDS ptsH NC_002928.3 2103890 2104159 D ortholog of Bordetella pertussis (BX470248) BP1501; phosphocarrier protein HPr 2103890..2104159 Bordetella parapertussis 12822 1666940 NP_884228.1 CDS ptsI NC_002928.3 2104281 2105975 D ortholog of Bordetella pertussis (BX470248) BP1502; phosphoenolpyruvate-protein phosphotransferase 2104281..2105975 Bordetella parapertussis 12822 1666941 NP_884229.1 CDS BPP1968A NC_002928.3 2106140 2106364 R ortholog of Bordetella pertussis (BX470248) BP1503; hypothetical protein complement(2106140..2106364) Bordetella parapertussis 12822 1666942 NP_884230.1 CDS osmC NC_002928.3 2106361 2106786 R ortholog of Bordetella pertussis (BX470248) BP1504; osmotically inducible protein C complement(2106361..2106786) Bordetella parapertussis 12822 1666943 NP_884231.1 CDS BPP1970 NC_002928.3 2106961 2107911 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 2106961..2107911 Bordetella parapertussis 12822 1666944 NP_884232.1 CDS BPP1971 NC_002928.3 2107953 2109113 D ortholog of Bordetella pertussis (BX470248) BP1506; hypothetical protein 2107953..2109113 Bordetella parapertussis 12822 1666693 NP_884233.1 CDS BPP1972 NC_002928.3 2109274 2110194 D ortholog of Bordetella pertussis (BX470248) BP1507; extracellular solute-binding protein 2109274..2110194 Bordetella parapertussis 12822 1666694 NP_884234.1 CDS BPP1973 NC_002928.3 2110207 2110848 D ortholog of Bordetella pertussis (BX470248) BP1508; inner membrane component of binding-protein-dependent transport system 2110207..2110848 Bordetella parapertussis 12822 1666695 NP_884235.1 CDS BPP1974 NC_002928.3 2110845 2111516 D ortholog of Bordetella pertussis (BX470248) BP1509; inner membrane component of binding-protein-dependent transport system 2110845..2111516 Bordetella parapertussis 12822 1666696 NP_884236.1 CDS BPP1975 NC_002928.3 2111513 2112283 D ortholog of Bordetella pertussis (BX470248) BP1510; ABC transporter ATP-binding protein 2111513..2112283 Bordetella parapertussis 12822 1666697 NP_884237.1 CDS dut NC_002928.3 2112280 2112729 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(2112280..2112729) Bordetella parapertussis 12822 1666698 NP_884238.1 CDS BPP1977 NC_002928.3 2112823 2113320 R ortholog of Bordetella pertussis (BX470248) BP2584A; hypothetical protein complement(2112823..2113320) Bordetella parapertussis 12822 1666699 NP_884239.1 CDS BPP1979 NC_002928.3 2114069 2115139 D ortholog of Bordetella pertussis (BX470248) BP2586; integral membrane protein 2114069..2115139 Bordetella parapertussis 12822 1665077 NP_884240.1 CDS BPP1980 NC_002928.3 2115136 2115609 R ortholog of Bordetella pertussis (BX470248) BP1749; AsnC family transcriptional regulator complement(2115136..2115609) Bordetella parapertussis 12822 1665078 NP_884241.1 CDS dfp NC_002928.3 2116711 2117919 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(2116711..2117919) Bordetella parapertussis 12822 1665080 NP_884242.1 CDS lspA NC_002928.3 2118024 2118530 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(2118024..2118530) Bordetella parapertussis 12822 1665081 NP_884243.1 CDS ileS NC_002928.3 2118533 2121394 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(2118533..2121394) Bordetella parapertussis 12822 1664819 NP_884244.1 CDS ribF NC_002928.3 2121384 2122349 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(2121384..2122349) Bordetella parapertussis 12822 1664820 NP_884245.1 CDS purN NC_002928.3 2122400 2123062 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2122400..2123062 Bordetella parapertussis 12822 1664821 NP_884246.1 CDS BPP1987 NC_002928.3 2123250 2124551 D ortholog of Bordetella pertussis (BX470248) BP1756; Similar to Methanopyrus kandleri AV19 tRNA/rRNA cytosine-C5-methylase Mk0295 SWALL:AAM01512 (EMBL:AE010327) (449 aa) fasta scores: E(): 3.4e-23, 30.24% id in 443 aa, and to Pyrococcus abyssi proliferating-cell nucleolar antigen P120, pab0830 SWALL:Q9UZ98 (EMBL:AJ248287) (449 aa) fasta scores: E(): 6.9e-28, 34.76% id in 302 aa; hypothetical protein 2123250..2124551 Bordetella parapertussis 12822 1664822 NP_884247.1 CDS BPP1988 NC_002928.3 2124548 2124922 R ortholog of Bordetella pertussis (BX470248) BP1757; hypothetical protein complement(2124548..2124922) Bordetella parapertussis 12822 1664823 NP_884248.1 CDS BPP1989 NC_002928.3 2125184 2126392 D ortholog of Bordetella pertussis (BX470248) BP1758; fatty acid desaturase 2125184..2126392 Bordetella parapertussis 12822 1664824 NP_884249.1 CDS uvrD NC_002928.3 2126389 2128689 D ortholog of Bordetella pertussis (BX470248) BP1759; DNA helicase II 2126389..2128689 Bordetella parapertussis 12822 1664825 NP_884250.1 CDS BPP1991 NC_002928.3 2128742 2131354 R ortholog of Bordetella pertussis (BX470248) BP1760; hypothetical protein complement(2128742..2131354) Bordetella parapertussis 12822 1664826 NP_884251.1 CDS BPP1992 NC_002928.3 2131715 2133640 R ortholog of Bordetella pertussis (BX470248) BP1761; ABC transporter ATP-binding protein complement(2131715..2133640) Bordetella parapertussis 12822 1664827 NP_884252.1 CDS BPP1993 NC_002928.3 2133637 2134533 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(2133637..2134533) Bordetella parapertussis 12822 1666211 NP_884253.1 CDS dapE NC_002928.3 2134540 2135679 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(2134540..2135679) Bordetella parapertussis 12822 1666212 NP_884254.1 CDS dapD NC_002928.3 2135679 2136500 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(2135679..2136500) Bordetella parapertussis 12822 1666213 NP_884255.1 CDS dapC NC_002928.3 2136526 2137740 R catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase complement(2136526..2137740) Bordetella parapertussis 12822 1666214 NP_884256.1 CDS BPP1997 NC_002928.3 2138071 2138400 R ortholog of Bordetella pertussis (BX470248) BP1766; hypothetical protein complement(2138071..2138400) Bordetella parapertussis 12822 1666215 NP_884257.1 CDS phg NC_002928.3 2138783 2140030 D ortholog of Bordetella pertussis (BX470248) BP1767; autotransporter 2138783..2140030 Bordetella parapertussis 12822 1666216 NP_884258.1 CDS BPP1999 NC_002928.3 2140105 2140386 D ortholog of Bordetella pertussis (BX470248) BP1768; hypothetical protein 2140105..2140386 Bordetella parapertussis 12822 1666217 NP_884259.1 CDS BPP2000 NC_002928.3 2140428 2140748 D ortholog of Bordetella pertussis (BX470248) BP1769; hypothetical protein 2140428..2140748 Bordetella parapertussis 12822 1666218 NP_884260.1 CDS cspA NC_002928.3 2141013 2141258 D ortholog of Bordetella pertussis (BX470248) BP1770; cold shock-like protein 2141013..2141258 Bordetella parapertussis 12822 1665129 NP_884261.1 CDS BPP2002 NC_002928.3 2141342 2141908 D ortholog of Bordetella pertussis (BX470248) BP1771; hypothetical protein 2141342..2141908 Bordetella parapertussis 12822 1665130 NP_884262.1 CDS cspA NC_002928.3 2142254 2142460 D ortholog of Bordetella pertussis (BX470248) BP1772; cold shock-like protein 2142254..2142460 Bordetella parapertussis 12822 1665131 NP_884263.1 CDS BPP2004 NC_002928.3 2142558 2143136 R ortholog of Bordetella pertussis (BX470248) BP1773; hypothetical protein complement(2142558..2143136) Bordetella parapertussis 12822 1665132 NP_884264.1 CDS tig NC_002928.3 2143315 2144625 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2143315..2144625 Bordetella parapertussis 12822 1665133 NP_884265.1 CDS clpP NC_002928.3 2144628 2145281 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2144628..2145281 Bordetella parapertussis 12822 1665134 NP_884266.2 CDS clpX NC_002928.3 2145386 2146690 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2145386..2146690 Bordetella parapertussis 12822 1666981 NP_884267.1 CDS lon NC_002928.3 2146834 2149332 D ortholog of Bordetella pertussis (BX470248) BP1777; ATP-dependent protease La 2146834..2149332 Bordetella parapertussis 12822 1666982 NP_884268.1 CDS BPP2009 NC_002928.3 2149464 2150414 R ortholog of Bordetella pertussis (BX470248) BP1778; LysR family transcriptional regulator complement(2149464..2150414) Bordetella parapertussis 12822 1666983 NP_884269.1 CDS BPP2010 NC_002928.3 2150642 2151865 D ortholog of Bordetella pertussis (BX470248) BP1779; hypothetical protein 2150642..2151865 Bordetella parapertussis 12822 1666984 NP_884270.1 CDS BPP2011 NC_002928.3 2151931 2152902 D ortholog of Bordetella pertussis (BX470248) BP1780; hypothetical protein 2151931..2152902 Bordetella parapertussis 12822 1666985 NP_884271.1 CDS BPP2012 NC_002928.3 2152907 2153371 D ortholog of Bordetella pertussis (BX470248) BP1781; hypothetical protein 2152907..2153371 Bordetella parapertussis 12822 1666986 NP_884272.1 CDS BPP2013 NC_002928.3 2153385 2154188 D ortholog of Bordetella pertussis (BX470248) BP1782; enoyl-CoA hydratase/isomerase 2153385..2154188 Bordetella parapertussis 12822 1666987 NP_884273.1 CDS BPP2014 NC_002928.3 2154185 2154616 D ortholog of Bordetella pertussis (BX470248) BP1783; hypothetical protein 2154185..2154616 Bordetella parapertussis 12822 1667184 NP_884274.1 CDS BPP2015 NC_002928.3 2154613 2155770 D ortholog of Bordetella pertussis (BX470248) BP1784; thiolase 2154613..2155770 Bordetella parapertussis 12822 1667185 NP_884275.1 CDS fabG NC_002928.3 2155777 2156568 D ortholog of Bordetella pertussis (BX470248) BP1785; 3-oxoacyl-ACP reductase 2155777..2156568 Bordetella parapertussis 12822 1667186 NP_884276.1 CDS BPP2017 NC_002928.3 2156565 2157728 D ortholog of Bordetella pertussis (BX470248) BP1786; acyl-CoA dehydrogenase 2156565..2157728 Bordetella parapertussis 12822 1667187 NP_884277.1 CDS pcaI NC_002928.3 2158743 2159459 D ortholog of Bordetella pertussis (BX470248) BP1788; 3-oxoadipate CoA-transferase subunit A 2158743..2159459 Bordetella parapertussis 12822 1667189 NP_884278.1 CDS pcaJ NC_002928.3 2159452 2160093 D ortholog of Bordetella pertussis (BX470248) BP1789; 3-oxoadipate CoA-transferase subunit B 2159452..2160093 Bordetella parapertussis 12822 1667190 NP_884279.1 CDS BPP2021 NC_002928.3 2160128 2161090 D ortholog of Bordetella pertussis (BX470248) BP1790; hypothetical protein 2160128..2161090 Bordetella parapertussis 12822 1667191 NP_884280.1 CDS BPP2022 NC_002928.3 2161432 2163048 D ortholog of Bordetella pertussis (BX470248) BP1793; autotransporter 2161432..2163048 Bordetella parapertussis 12822 1667340 NP_884281.1 CDS lexA NC_002928.3 2163433 2164161 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(2163433..2164161) Bordetella parapertussis 12822 1667341 NP_884282.1 CDS tyrB NC_002928.3 2164212 2165414 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(2164212..2165414) Bordetella parapertussis 12822 1667342 NP_884283.1 CDS uvrB NC_002928.3 2165493 2167520 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2165493..2167520 Bordetella parapertussis 12822 1667343 NP_884284.1 CDS ptpA NC_002928.3 2167746 2168273 D ortholog of Bordetella pertussis (BX470248) BP1797; low molecular weight protein-tyrosine-phosphatase 2167746..2168273 Bordetella parapertussis 12822 1667344 NP_884285.1 CDS BPP2027 NC_002928.3 2168489 2169001 D ortholog of Bordetella pertussis (BX470248) BP1798; DNA-binding protein 2168489..2169001 Bordetella parapertussis 12822 1667025 NP_884286.1 CDS iscS NC_002928.3 2169019 2170230 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 2169019..2170230 Bordetella parapertussis 12822 1667026 NP_884287.1 CDS iscU NC_002928.3 2170264 2170674 D ortholog of Bordetella pertussis (BX470248) BP1800; scaffold protein 2170264..2170674 Bordetella parapertussis 12822 1667027 NP_884288.1 CDS iscA NC_002928.3 2170676 2170999 D ortholog of Bordetella pertussis (BX470248) BP1801; [Fe-S] cluster formation/repair protein 2170676..2170999 Bordetella parapertussis 12822 1667028 NP_884289.1 CDS hscB NC_002928.3 2171002 2171514 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2171002..2171514 Bordetella parapertussis 12822 1667029 NP_884290.2 CDS hscA NC_002928.3 2171644 2173506 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2171644..2173506 Bordetella parapertussis 12822 1667030 NP_884291.1 CDS fdx NC_002928.3 2173516 2173857 D ortholog of Bordetella pertussis (BX470248) BP1804; ferredoxin, 2Fe-2S 2173516..2173857 Bordetella parapertussis 12822 1667031 NP_884292.1 CDS BPP2034 NC_002928.3 2173857 2174051 D ortholog of Bordetella pertussis (BX470248) BP1805; hypothetical protein 2173857..2174051 Bordetella parapertussis 12822 1666425 NP_884293.1 CDS BPP2035 NC_002928.3 2174178 2175071 D ortholog of Bordetella pertussis (BX470248) BP1806; hypothetical protein 2174178..2175071 Bordetella parapertussis 12822 1666426 NP_884294.1 CDS paaG NC_002928.3 2175096 2175905 R ortholog of Bordetella pertussis (BX470248) BP1808; enoyl-CoA hydratase complement(2175096..2175905) Bordetella parapertussis 12822 1666427 NP_884295.1 CDS livG NC_002928.3 2176175 2176999 D ortholog of Bordetella pertussis (BX470248) BP1094; high-affinity branched-chain amino acid transport ATP-binding protein 2176175..2176999 Bordetella parapertussis 12822 1666428 NP_884296.1 CDS livH NC_002928.3 2176999 2177877 D ortholog of Bordetella pertussis (BX470248) BP1095; high-affinity branched-chain amino acid transport system permease 2176999..2177877 Bordetella parapertussis 12822 1666429 NP_884297.1 CDS livM NC_002928.3 2177881 2178918 D ortholog of Bordetella pertussis (BX470248) BP1096; high-affinity branched-chain amino acid transport system permease 2177881..2178918 Bordetella parapertussis 12822 1666430 NP_884298.1 CDS livK NC_002928.3 2178956 2180134 D ortholog of Bordetella pertussis (BX470248) BP1097; amino acids binding protein 2178956..2180134 Bordetella parapertussis 12822 1666431 NP_884299.1 CDS livF NC_002928.3 2180142 2180957 D ortholog of Bordetella pertussis (BX470248) BP1098; high-affinity branched-chain amino acid transport ATP-binding protein 2180142..2180957 Bordetella parapertussis 12822 1666432 NP_884300.1 CDS BPP2042 NC_002928.3 2180954 2182819 D ortholog of Bordetella pertussis (BX470248) BP1099; long-chain fatty-acid--CoA ligase 2180954..2182819 Bordetella parapertussis 12822 1664684 NP_884301.1 CDS BPP2043 NC_002928.3 2182898 2183530 D ortholog of Bordetella pertussis (BX470248) BP1100; TetR family transcriptional regulator 2182898..2183530 Bordetella parapertussis 12822 1664685 NP_884302.1 CDS BPP2044 NC_002928.3 2183527 2183862 R ortholog of Bordetella pertussis (BX470248) BP1101; hypothetical protein complement(2183527..2183862) Bordetella parapertussis 12822 1664686 NP_884303.1 CDS lysS NC_002928.3 2183879 2185399 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(2183879..2185399) Bordetella parapertussis 12822 1664687 NP_884304.1 CDS BPP2046 NC_002928.3 2185406 2186161 R ortholog of Bordetella pertussis (BX470248) BP1103; short chain dehydrogenase complement(2185406..2186161) Bordetella parapertussis 12822 1664688 NP_884305.1 CDS prfB NC_002928.3 2186191 2187295 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(join(2186191..2187213,2187215..2187295)) Bordetella parapertussis 12822 1664689 NP_884306.1 CDS recJ NC_002928.3 2187398 2189134 R ortholog of Bordetella pertussis (BX470248) BP1105; single-stranded-DNA-specific exonuclease complement(2187398..2189134) Bordetella parapertussis 12822 1664690 NP_884307.1 CDS BPP2049 NC_002928.3 2189080 2190057 R ortholog of Bordetella pertussis (BX470248) BP1106; hypothetical protein complement(2189080..2190057) Bordetella parapertussis 12822 1665805 NP_884308.1 CDS lolC NC_002928.3 2190115 2191347 D ortholog of Bordetella pertussis (BX470248) BP1107; lipoprotein releasing system transmembrane protein 2190115..2191347 Bordetella parapertussis 12822 1665806 NP_884309.1 CDS lolD NC_002928.3 2191340 2192035 D ortholog of Bordetella pertussis (BX470248) BP1108; lipoprotein releasing system ATP-binding protein 2191340..2192035 Bordetella parapertussis 12822 1665807 NP_884310.1 CDS BPP2052 NC_002928.3 2192069 2192896 D ortholog of Bordetella pertussis (BX470248) BP1109; deoxyribonuclease 2192069..2192896 Bordetella parapertussis 12822 1665808 NP_884311.1 CDS sphB3 NC_002928.3 2193178 2196408 D ortholog of Bordetella pertussis (BX470248) BP1110; serine protease 2193178..2196408 Bordetella parapertussis 12822 1665809 NP_884312.1 CDS BPP2054 NC_002928.3 2196529 2197749 R transposase for IS1001 element; transposase complement(2196529..2197749) Bordetella parapertussis 12822 1667243 NP_884313.1 CDS BPP2055 NC_002928.3 2197931 2198695 D ortholog of Bordetella pertussis (BX470248) BP1454; short chain dehydrogenase 2197931..2198695 Bordetella parapertussis 12822 1667244 NP_884314.1 CDS gpmB NC_002928.3 2198876 2199520 R ortholog of Bordetella pertussis (BX470248) BP1455; phosphoglycerate mutase complement(2198876..2199520) Bordetella parapertussis 12822 1667245 NP_884315.1 CDS BPP2057 NC_002928.3 2199531 2200430 R ortholog of Bordetella pertussis (BX470248) BP1456; LysR family transcriptional regulator complement(2199531..2200430) Bordetella parapertussis 12822 1667246 NP_884316.1 CDS BPP2058 NC_002928.3 2200478 2201563 R ortholog of Bordetella pertussis (BX470248) BP1457; ABC transporter ATP-binding protein complement(2200478..2201563) Bordetella parapertussis 12822 1667247 NP_884317.1 CDS BPP2059 NC_002928.3 2201560 2203269 R ortholog of Bordetella pertussis (BX470248) BP1458; ABC transporter permease complement(2201560..2203269) Bordetella parapertussis 12822 1667248 NP_884318.1 CDS BPP2060 NC_002928.3 2203346 2204665 R ortholog of Bordetella pertussis (BX470248) BP2271; regulatory lipoprotein complement(2203346..2204665) Bordetella parapertussis 12822 1668085 NP_884319.1 CDS BPP2061 NC_002928.3 2204925 2206238 D ortholog of Bordetella pertussis (BX470248) BP2269; xanthine/uracil family permease 2204925..2206238 Bordetella parapertussis 12822 1668086 NP_884320.1 CDS BPP2062 NC_002928.3 2206269 2207906 R ortholog of Bordetella pertussis (BX470248) BP2268; methyl-accepting chemotaxis protein complement(2206269..2207906) Bordetella parapertussis 12822 1668087 NP_884321.1 CDS greA NC_002928.3 2208530 2209006 D ortholog of Bordetella pertussis (BX470248) BP2267; transcription elongation factor 2208530..2209006 Bordetella parapertussis 12822 1668088 NP_884322.1 CDS BPP2064 NC_002928.3 2209308 2210258 R transposase for IS1002 element; IS1002 transposase complement(2209308..2210258) Bordetella parapertussis 12822 1668089 NP_884323.1 CDS BPP2065 NC_002928.3 2210398 2211000 R ortholog of Bordetella pertussis (BX470248) BP1079; hypothetical protein complement(2210398..2211000) Bordetella parapertussis 12822 1665746 NP_884324.1 CDS rrmJ NC_002928.3 2211019 2211651 D ortholog of Bordetella pertussis (BX470248) BP1078; ribosomal RNA large subunit methyltransferase j 2211019..2211651 Bordetella parapertussis 12822 1665747 NP_884325.1 CDS ftsH NC_002928.3 2211889 2213775 D ortholog of Bordetella pertussis (BX470248) BP1077; cell division protein 2211889..2213775 Bordetella parapertussis 12822 1665748 NP_884326.1 CDS folP NC_002928.3 2213794 2214636 D ortholog of Bordetella pertussis (BX470248) BP1076; dihydropteroate synthase 2213794..2214636 Bordetella parapertussis 12822 1666807 NP_884327.1 CDS glmM NC_002928.3 2214633 2215991 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 2214633..2215991 Bordetella parapertussis 12822 1666808 NP_884328.1 CDS BPP2070 NC_002928.3 2216212 2217006 D ortholog of Bordetella pertussis (BX470248) BP1074; hypothetical protein 2216212..2217006 Bordetella parapertussis 12822 1666809 NP_884329.1 CDS ppx NC_002928.3 2217226 2218719 R ortholog of Bordetella pertussis (BX470248) BP1073; exopolyphosphatase complement(2217226..2218719) Bordetella parapertussis 12822 1666810 NP_884330.1 CDS ppk NC_002928.3 2218955 2221036 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2218955..2221036 Bordetella parapertussis 12822 1666811 NP_884331.1 CDS pstS NC_002928.3 2221231 2222271 D ortholog of Bordetella pertussis (BX470248) BP1071; phosphate-binding periplasmic protein precursor 2221231..2222271 Bordetella parapertussis 12822 1666812 NP_884332.1 CDS pstC NC_002928.3 2222406 2223422 D ortholog of Bordetella pertussis (BX470248) BP1070; phosphate ABC transporter permease 2222406..2223422 Bordetella parapertussis 12822 1666813 NP_884333.1 CDS pstA NC_002928.3 2223444 2224301 D ortholog of Bordetella pertussis (BX470248) BP1069; phosphate transport system permease 2223444..2224301 Bordetella parapertussis 12822 1666096 NP_884334.1 CDS pstB NC_002928.3 2224298 2225122 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 2224298..2225122 Bordetella parapertussis 12822 1666097 NP_884335.1 CDS BPP2077 NC_002928.3 2225388 2225777 R Similar to Yersinia pestis hypothetical protein YPO1817 SWALL:Q8ZFA0 (EMBL:AJ414150) (139 aa) fasta scores: E(): 3.4e-12, 42.22% id in 135 aa; hypothetical protein complement(2225388..2225777) Bordetella parapertussis 12822 1666098 NP_884336.1 CDS BPP2078 NC_002928.3 2225800 2225982 R Similar to Clostridium perfringens hypothetical protein Pcp27 SWALL:Q93MC0 (EMBL:AP003515) (65 aa) fasta scores: E(): 2.7e-12, 55.93% id in 59 aa, and to Rhizobium meliloti hypothetical protein R02039 or SMC04441 SWALL:Q92K60 (EMBL:AL591789) (62 aa) fasta scores: E(): 2.6e-11, 58.33% id in 60 aa; hypothetical protein complement(2225800..2225982) Bordetella parapertussis 12822 1666099 NP_884337.1 CDS BPP2079 NC_002928.3 2226390 2227088 D Similar to Pseudomonas aeruginosa hypothetical protein PA2264 SWALL:Q9I1K9 (EMBL:AE004652) (238 aa) fasta scores: E(): 2.2e-33, 43.27% id in 238 aa, and to Campylobacter jejuni oxidoreductase subunit CJ0414 SWALL:Q9PI91 (EMBL:AL139075) (242 aa) fasta scores: E(): 4e-15, 32.39% id in 213 aa; hypothetical protein 2226390..2227088 Bordetella parapertussis 12822 1666100 NP_884338.1 CDS BPP2080 NC_002928.3 2227092 2228861 D Similar to Pseudomonas aeruginosa gluconate dehydrogenase PA2265 SWALL:Q9I1K8 (EMBL:AE004652) (591 aa) fasta scores: E(): 8.4e-119, 50.76% id in 591 aa, and to Pectobacterium cypripedii dehydrogenase subunit precursor SWALL:O34214 (EMBL:U97665) (615 aa) fasta scores: E(): 2.6e-116, 50% id in 596 aa; gluconate dehydrogenase 2227092..2228861 Bordetella parapertussis 12822 1666101 NP_884339.1 CDS BPP2081 NC_002928.3 2228872 2230227 D Similar to Gluconobacter oxydans sorbitol dehydrogenase cytochrome C subunit SldC SWALL:Q9LBK7 (EMBL:AB039821) (478 aa) fasta scores: E(): 3.3e-45, 38.77% id in 423 aa, and to Pectobacterium cypripedii cytochrome C precursor SWALL:O34215 (EMBL:U97665) (441 aa) fasta scores: E(): 3.7e-40, 39.1% id in 422 aa; cytochrome C precursor 2228872..2230227 Bordetella parapertussis 12822 1666102 NP_884340.1 CDS BPP2082 NC_002928.3 2230239 2230979 R Similar, but the N-terminal-signal peptide region, to Chlamydomonas reinhardtii carbonic anhydrase precursor beta-ca1 SWALL:Q39589 (EMBL:U41189) (267 aa) fasta scores: E(): 2e-25, 46.39% id in 194 aa; carbonic anhydrase precursor complement(2230239..2230979) Bordetella parapertussis 12822 1666347 NP_884341.1 CDS BPP2083 NC_002928.3 2231077 2232024 R Similar to Pseudomonas aeruginosa probable transcriptional regulator PA2206 SWALL:Q9I1R1 (EMBL:AE004647) (315 aa) fasta scores: E(): 7.8e-30, 34.51% id in 310 aa, and to Azospirillum brasilense galactose-binding protein regulator GbpR SWALL:GBPR_AZOBR (SWALL:P52661) (342 aa) fasta scores: E(): 4.1e-24, 31.72% id in 290 aa; regulatory protein complement(2231077..2232024) Bordetella parapertussis 12822 1666348 NP_884342.1 CDS gbd NC_002928.3 2232190 2233329 D Similar to Alcaligenes eutrophus NAD-dependent 4-hydroxybutyrate dehydrogenase Gbd SWALL:Q59104 (EMBL:L36817) (382 aa) fasta scores: E(): 2.3e-91, 63.42% id in 380 aa, and to Ralstonia solanacearum probable NAD-dependent 4-hydroxybutyrate dehydrogenase oxidoreductase Gbd1 or RSC1771 or RS02958 SWALL:Q8XYI7 (EMBL:AL646066) (382 aa) fasta scores: E(): 3.7e-87, 62.2% id in 381 aa; NAD-dependent 4-hydroxybutyrate dehydrogenase 2232190..2233329 Bordetella parapertussis 12822 1666349 NP_884343.1 CDS BPP2085 NC_002928.3 2233372 2234952 D Similar to Pseudomonas putida ketoglutarate semialdehyde dehydrogenase SWALL:Q52019 (EMBL:M69158) (525 aa) fasta scores: E(): 7.3e-103, 56.48% id in 524 aa, and to Ralstonia solanacearum probable ketoglutarate semialdehyde dehydrogenase RSP0827 or RS05368 SWALL:Q8XRK4 (EMBL:AL646081) (528 aa) fasta scores: E(): 1.4e-101, 56.23% id in 521 aa; ketoglutarate semialdehyde dehydrogenase 2233372..2234952 Bordetella parapertussis 12822 1666350 NP_884344.1 CDS BPP2086 NC_002928.3 2235051 2235509 D hypothetical protein 2235051..2235509 Bordetella parapertussis 12822 1666351 NP_884345.1 CDS BPP2087 NC_002928.3 2235583 2236326 D Low similarity in its N-terminal region to Chlamydia trachomatis hypothetical protein CT610 SWALL:O84616 (EMBL:AE001331) (231 aa) fasta scores: E(): 5.4e-05, 26.84% id in 190 aa; hypothetical protein 2235583..2236326 Bordetella parapertussis 12822 1666352 NP_884346.1 CDS BPP2088 NC_002928.3 2236601 2237452 D Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase ATU4124 or AGR_L_1459 SWALL:AAL44924 (EMBL:AE009343) (268 aa) fasta scores: E(): 2.6e-47, 59.63% id in 270 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraF or PA1071 SWALL:BRAF_PSEAE (SWALL:P21629) (255 aa) fasta scores: E(): 9.3e-26, 40.23% id in 251 aa; branched chain amino acid ABC transporter ATP-binding protein 2236601..2237452 Bordetella parapertussis 12822 1666353 NP_884347.1 CDS BPP2089 NC_002928.3 2237445 2238149 D Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase ATU4125 or AGR_L_1457 SWALL:AAL44925 (EMBL:AE009343) (233 aa) fasta scores: E(): 1.1e-39, 55.89% id in 229 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraG or PA1070 SWALL:BRAG_PSEAE (SWALL:P21630) (233 aa) fasta scores: E(): 6.6e-25, 43.91% id in 230 aa. Also similar to BPP3336 (237 aa) fasta scores: E(): 1.9e-36, 58.009% identity in 231 aa overlap; branched chain amino acid ABC transporter ATP-binding protein 2237445..2238149 Bordetella parapertussis 12822 1667619 NP_884348.1 CDS BPP2090 NC_002928.3 2238153 2239040 D Similar to Brucella melitensis high-affinity branched-chain amino acid transport system permease LivH BMEII0341 SWALL:Q8YD36 (EMBL:AE009671) (295 aa) fasta scores: E(): 3.8e-73, 67.24% id in 290 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein ATU4126 or AGR_L_1455 SWALL:AAL44926 (EMBL:AE009343) (295 aa) fasta scores: E(): 3.5e-70, 67.58% id in 290 aa. Also similar to BPP3338 (296 aa) fasta scores: E(): 1.4e-64, 65.085% identity in 295 aa overlap; high-affinity branched-chain amino acid transporter membrane protein 2238153..2239040 Bordetella parapertussis 12822 1667620 NP_884349.1 CDS BPP2091 NC_002928.3 2239048 2240061 D Similar to Rhizobium meliloti permease ABC transporter protein R02976 or SMC03117 SWALL:Q92LQ4 (EMBL:AL591792) (330 aa) fasta scores: E(): 1.3e-64, 59.18% id in 294 aa, and to Brucella melitensis high-affinity branched-chain amino acid transport system permease LivM BMEII0340 SWALL:Q8YD37 (EMBL:AE009671) (331 aa) fasta scores: E(): 1.7e-61, 55.1% id in 294 aa. Also similar to BPP3339 (324 aa) fasta scores: E(): 2.5e-48, 52.336% identityin 321 aa overlap; branched chain amino acid ABC transporter 2239048..2240061 Bordetella parapertussis 12822 1667621 NP_884350.1 CDS BPP2092 NC_002928.3 2240169 2241371 D Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein ATU4123 or AGR_L_1462 SWALL:AAL44923 (EMBL:AE009343) (402 aa) fasta scores: E(): 1e-74, 52.38% id in 399 aa, and to Brucella melitensis branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein BMEII0344 SWALL:Q8YD33 (EMBL:AE009671) (401 aa) fasta scores: E(): 2.4e-72, 50.87% id in 399 aa; branched chain amino-acid ABC transporter substrate-binding protein 2240169..2241371 Bordetella parapertussis 12822 1667622 NP_884351.1 CDS BPP2093 NC_002928.3 2241396 2242118 R Similar to Brucella melitensis high-affinity branched-chain amino acid transport ATP-binding protein LivF BMEII0098 SWALL:Q8YDS7 (EMBL:AE009648) (242 aa) fasta scores: E(): 7.9e-46, 65.81% id in 234 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraG or PA1070 SWALL:BRAG_PSEAE (SWALL:P21630) (233 aa) fasta scores: E(): 1.1e-31, 49.35% id in 233 aa, and to Salmonella typhimurium high-affinity branched-chain amino acid transport ATP-binding protein LivF or LivG or STM3560 or STY4252 SWALL:LIVF_SALTY (SWALL:P30294) (237 aa) fasta scores: E(): 1.5e-29, 47.21% id in 233 aa. Also similar to BPP0565 (245 aa) fasta scores: E(): 8.2e-32, 51.709% identity in 234 aa overlap; high-affinity branched-chain amino acid transporter ATP-binding protein complement(2241396..2242118) Bordetella parapertussis 12822 1667623 NP_884352.1 CDS BPP2094 NC_002928.3 2242115 2242849 R Similar to Pyrobaculum aerophilum branched-chain amino acid transport ATP-binding protein PAE1389 SWALL:Q8ZX95 (EMBL:AE009819) (245 aa) fasta scores: E(): 1.9e-29, 45% id in 240 aa, and to Archaeoglobus fulgidus probable branched-chain amino acid transport ATP-binding protein LivG or AF1390 SWALL:LIVG_ARCFU (SWALL:O28881) (257 aa) fasta scores: E(): 1e-17, 31.83% id in 245 aa; branched chain amino acid ABC transporter ATP-binding protein complement(2242115..2242849) Bordetella parapertussis 12822 1667624 NP_884353.1 CDS BPP2095 NC_002928.3 2242846 2243793 R Similar to Brucella melitensis high-affinity branched-chain amino acid transport system permease LivM BMEII0101 SWALL:Q8YDS4 (EMBL:AE009648) (315 aa) fasta scores: E(): 4.9e-72, 65.19% id in 316 aa, and to Deinococcus radiodurans branched-chain amino acid ABC transporter, permease DR2120 SWALL:Q9RSK4 (EMBL:AE002047) (310 aa) fasta scores: E(): 2.4e-19, 33.22% id in 301 aa; high-affinity branched-chain amino acid transporter membrane protein complement(2242846..2243793) Bordetella parapertussis 12822 1667625 NP_884354.1 CDS BPP2096 NC_002928.3 2243790 2244653 R Similar to Brucella melitensis high-affinity branched-chain amino acid transport system permease LivH BMEII0102 SWALL:Q8YDS3 (EMBL:AE009648) (287 aa) fasta scores: E(): 1.3e-69, 64.45% id in 287 aa; high-affinity branched-chain amino acid transporter membrane protein complement(2243790..2244653) Bordetella parapertussis 12822 1665007 NP_884355.1 CDS BPP2097 NC_002928.3 2244681 2245889 R Similar to Brucella melitensis Leu/Ile/Val-binding protein precursor BMEII0103 SWALL:Q8YDS2 (EMBL:AE009648) (415 aa) fasta scores: E(): 5.2e-109, 71.32% id in 401 aa, and to Escherichia coli leucine-specific binding protein precursor LivK or B3458 SWALL:LIVK_ECOLI (SWALL:P04816) (369 aa) fasta scores: E(): 6.4e-12, 23.81% id in 357 aa; branched chain amino-acid ABC transporter substrate-binding protein complement(2244681..2245889) Bordetella parapertussis 12822 1665008 NP_884356.1 CDS BPP2098 NC_002928.3 2246113 2247492 D hypothetical protein 2246113..2247492 Bordetella parapertussis 12822 1665009 NP_884357.1 CDS BPP2099 NC_002928.3 2247489 2248274 D Similar to Agrobacterium tumefaciens transcriptional regulator, IclR family ATU4824 or AGR_L_119 SWALL:AAL45618 (EMBL:AE009411) (288 aa) fasta scores: E(): 1.3e-23, 35.88% id in 248 aa, and to Rhizobium meliloti transcription regulator protein R01691 or SMC00263 SWALL:Q92PP5 (EMBL:AL591788) (282 aa) fasta scores: E(): 4.3e-21, 33.87% id in 248 aa; transcriptional regulator 2247489..2248274 Bordetella parapertussis 12822 1665010 NP_884358.1 CDS BPP2100 NC_002928.3 2248406 2249155 D Similar to Bacillus halodurans 3-oxoacyl-[acyl-carrier protein] reductase FabG or BH2491 SWALL:Q9KA03 (EMBL:AP001515) (246 aa) fasta scores: E(): 2.8e-31, 43.03% id in 244 aa, and to Escherichia coli 3-oxoacyl-[acyl-carrier protein] reductase FabG or B1093 SWALL:FABG_ECOLI (SWALL:P25716) (244 aa) fasta scores: E(): 1.9e-28, 41.2% id in 250 aa; short chain dehydrogenase 2248406..2249155 Bordetella parapertussis 12822 1665011 NP_884359.1 CDS BPP2101 NC_002928.3 2249222 2250196 D Similar to Agrobacterium tumefaciens hypothetical protein ATU4727 or AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 1.2e-40, 40.76% id in 314 aa, and to Rhizobium meliloti hypothetical protein RA1058 or SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 3.6e-40, 40.72% id in 302 aa; hypothetical protein 2249222..2250196 Bordetella parapertussis 12822 1665012 NP_884360.1 CDS BPP2102 NC_002928.3 2250248 2251096 D Low similarity to Streptomyces coelicolor hydrolase SC7H1.13 SWALL:O54172 (EMBL:AL021411) (261 aa) fasta scores: E(): 3.3e-08, 30% id in 260 aa; hydrolase 2250248..2251096 Bordetella parapertussis 12822 1665013 NP_884361.1 CDS BPP2103 NC_002928.3 2251113 2252627 D Similar to Streptomyces coelicolor monooxygenase SCE87.23c SWALL:Q9RKB5 (EMBL:AL132674) (519 aa) fasta scores: E(): 1e-86, 46.03% id in 504 aa, and to Pseudomonas fluorescens cyclohexanone monooxygenase homolog SWALL:AAC36351 (EMBL:AF090329) (512 aa) fasta scores: E(): 1.2e-84, 46.37% id in 483 aa; monoxygenase 2251113..2252627 Bordetella parapertussis 12822 1665014 NP_884362.1 CDS BPP2104 NC_002928.3 2252624 2253532 D Similar to Mycobacterium tuberculosis 3-hydroxybutyryl-CoA dehydrogenase FadB3 or Rv1715 or MTV048.02 or MT1754 SWALL:O53928 (EMBL:AL022003) (304 aa) fasta scores: E(): 8e-46, 51.71% id in 292 aa, and to Bacillus subtilis probable 3-hydroxybutyryl-CoA dehydrogenase MmgB SWALL:HBD_BACSU (SWALL:P45856) (287 aa) fasta scores: E(): 2.2e-23, 39.08% id in 284 aa; 3-hydroxybutyryl-CoA dehydrogenase 2252624..2253532 Bordetella parapertussis 12822 1665015 NP_884363.1 CDS BPP2105 NC_002928.3 2253968 2254735 D Similar to Acinetobacter spSE19 enoyl CoA dehydratase FadB or ORF14 SWALL:Q9F7E7 (EMBL:AF282240) (258 aa) fasta scores: E(): 5.6e-20, 33.86% id in 251 aa, and to Mycobacterium tuberculosis probable enoyl-CoA hydratase EchA8 or Rv1070c or MT1100 or MTV017.23c SWALL:ECH8_MYCTU (SWALL:O53418) (257 aa) fasta scores: E(): 5.1e-19, 32.66% id in 251 aa; enoyl-CoA hydratase 2253968..2254735 Bordetella parapertussis 12822 1665570 NP_884364.1 CDS BPP2106 NC_002928.3 2254773 2255975 D Similar to Ralstonia solanacearum transmembrane protein RSC0796 or RS05041 SWALL:Q8Y194 (EMBL:AL646061) (420 aa) fasta scores: E(): 1.1e-61, 41.04% id in 402 aa, and to Acinetobacter spNCIMB9871 L-carnitine dehydrogenase-like protein ORF17 SWALL:Q93RL7 (EMBL:AB026669) (405 aa) fasta scores: E(): 2.3e-60, 41.14% id in 401 aa; L-carnitine dehydrogenase-like protein 2254773..2255975 Bordetella parapertussis 12822 1665571 NP_884365.1 CDS BPP2107 NC_002928.3 2256062 2257300 D Similar to Rhizobium loti ABC transporter, amino acid-binding protein MLR7182 SWALL:Q986W4 (EMBL:AP003011) (419 aa) fasta scores: E(): 4.7e-22, 26.55% id in 403 aa, and to Pseudomonas aeruginosa leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor BraC or PA1074 SWALL:BRAC_PSEAE (SWALL:P21175) (373 aa) fasta scores: E(): 2e-11, 25.64% id in 386 aa; ABC transporter solute-binding protein 2256062..2257300 Bordetella parapertussis 12822 1665572 NP_884366.1 CDS BPP2108 NC_002928.3 2257338 2258213 D Similar to Synechocystis sp high-affinity branched-chain amino acid transport permease LivH or SLR0949 SWALL:P74318 (EMBL:D90914) (286 aa) fasta scores: E(): 1.3e-30, 37.58% id in 282 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport system permease BraD or PA1073 SWALL:BRAD_PSEAE (SWALL:P21627) (307 aa) fasta scores: E(): 4.3e-12, 29.86% id in 298 aa; ABC transporter permease 2257338..2258213 Bordetella parapertussis 12822 1665573 NP_884367.1 CDS BPP2109 NC_002928.3 2258214 2259113 D Similar to Rhizobium loti ABC transporter, permease MLL7174 SWALL:Q986X3 (EMBL:AP003011) (327 aa) fasta scores: E(): 4.4e-29, 39.93% id in 298 aa, and to Archaeoglobus fulgidus branched-chain amino acid ABC transporter, permease AF0824 SWALL:O29434 (EMBL:AE001047) (323 aa) fasta scores: E(): 3.6e-19, 32.65% id in 297 aa; ABC transporter permease 2258214..2259113 Bordetella parapertussis 12822 1665574 NP_884368.1 CDS BPP2110 NC_002928.3 2259116 2259877 D Similar to Rhizobium loti ABC transporter, ATP-binding protein MLL7176 SWALL:Q986X0 (EMBL:AP003011) (266 aa) fasta scores: E(): 3.3e-30, 45.38% id in 249 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraF or PA1071 SWALL:BRAF_PSEAE (SWALL:P21629) (255 aa) fasta scores: E(): 6.3e-22, 36.94% id in 249 aa; ABC transporter ATP-binding protein 2259116..2259877 Bordetella parapertussis 12822 1665575 NP_884369.1 CDS BPP2111 NC_002928.3 2259874 2260599 D Similar to Anabaena sp ATP-binding protein of branched-chain amino acid ABC transporter ALL2912 SWALL:Q8YT15 (EMBL:AP003591) (247 aa) fasta scores: E(): 7.1e-32, 47.84% id in 232 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraG or PA1070 SWALL:BRAG_PSEAE (SWALL:P21630) (233 aa) fasta scores: E(): 1.5e-26, 43.96% id in 232 aa; ABC transporter ATP-binding protein 2259874..2260599 Bordetella parapertussis 12822 1665576 NP_884370.1 CDS BPP2112 NC_002928.3 2260596 2261978 D Similar to Bradyrhizobium japonicum malonamidase E2 SWALL:Q9ZIV5 (EMBL:AF012735) (414 aa) fasta scores: E(): 1.6e-35, 33.25% id in 415 aa, and to Pseudomonas putida amidase SWALL:AMID_PSEPU (SWALL:O69768) (466 aa) fasta scores: E(): 5e-18, 29.42% id in 435 aa; amidase 2260596..2261978 Bordetella parapertussis 12822 1665577 NP_884371.1 CDS BPP2113 NC_002928.3 2262058 2263452 D Similar to Pseudomonas aeruginosa hypothetical protein PA1567 SWALL:Q9I3F0 (EMBL:AE004585) (465 aa) fasta scores: E(): 2.3e-85, 51.32% id in 452 aa, and to Escherichia coli probable oxidoreductase OrdL or B1301 SWALL:ORDL_ECOLI (SWALL:P37906) (426 aa) fasta scores: E(): 8.4e-22, 30.5% id in 436 aa; hypothetical protein 2262058..2263452 Bordetella parapertussis 12822 1665578 NP_884372.1 CDS BPP2114 NC_002928.3 2263517 2264230 D Similar to Deinococcus radiodurans transcriptional regulator, GntR family DR0815 SWALL:Q9RW54 (EMBL:AE001936) (267 aa) fasta scores: E(): 1.2e-08, 31.15% id in 199 aa, and to Brucella melitensis transcriptional regulator, GntR family BMEII0281 SWALL:Q8YD96 (EMBL:AE009666) (238 aa) fasta scores: E(): 2.9e-08, 28.57% id in 210 aa; GntR family transcriptional regulator 2263517..2264230 Bordetella parapertussis 12822 1666090 NP_884373.1 CDS BPP2115 NC_002928.3 2264274 2264582 R Low similarity to Vibrio cholerae hypothetical 11.2 kDa protein SWALL:O31026 (EMBL:AF025662) (98 aa) fasta scores: E(): 0.00025, 26.31% id in 95 aa; hypothetical protein complement(2264274..2264582) Bordetella parapertussis 12822 1666091 NP_884374.1 CDS BPP2117 NC_002928.3 2265465 2266745 R Similar to Rhizobium meliloti probable ABC transporter integral membrane protein RB0038 or SMB20035 SWALL:Q92XC4 (EMBL:AL603642) (426 aa) fasta scores: E(): 2.3e-89, 58.25% id in 424 aa, and to Salmonella typhimurium DedA family, membrane protein YiaN or STM3672 SWALL:Q8ZL80 (EMBL:AE008870) (425 aa) fasta scores: E(): 7.7e-86, 56.6% id in 424 aa; ABC transporter complement(2265465..2266745) Bordetella parapertussis 12822 1666093 NP_884375.1 CDS BPP2118 NC_002928.3 2266745 2267257 R Similar to Rhizobium meliloti ABC transporter integral membrane protein RB0037 or SMB20034 SWALL:Q92XC5 (EMBL:AL603642) (187 aa) fasta scores: E(): 5e-25, 49.34% id in 152 aa, and to Agrobacterium tumefaciens hypothetical protein ATU2742 or AGR_C_4972 SWALL:AAL43723 (EMBL:AE009221) (176 aa) fasta scores: E(): 5.4e-21, 40.13% id in 152 aa; ABC transporter complement(2266745..2267257) Bordetella parapertussis 12822 1666094 NP_884376.1 CDS BPP2119 NC_002928.3 2267336 2268394 R Similar to Rhizobium meliloti ABC transporter periplasmic solute-binding protein RB0039 or SMB20036 SWALL:Q92XC3 (EMBL:AL603642) (338 aa) fasta scores: E(): 5.4e-49, 41.21% id in 330 aa, and to Agrobacterium tumefaciens C4-dicarboxylate binding protein ATU2744 or AGR_C_4976 SWALL:AAL43725 (EMBL:AE009221) (335 aa) fasta scores: E(): 1.4e-44, 39.5% id in 324 aa; ABC transporter solute-binding protein complement(2267336..2268394) Bordetella parapertussis 12822 1666095 NP_884377.1 CDS BPP2120 NC_002928.3 2268391 2268786 R hypothetical protein complement(2268391..2268786) Bordetella parapertussis 12822 1664715 NP_884378.1 CDS BPP2121 NC_002928.3 2268827 2269741 R Similar to Bacillus subtilis YisK protein SWALL:O06724 (EMBL:Y09476) (301 aa) fasta scores: E(): 6.7e-47, 46.75% id in 308 aa, and to Ralstonia solanacearum hypothetical protein RSC1824 or RS04254 SWALL:Q8XYD4 (EMBL:AL646066) (319 aa) fasta scores: E(): 1.2e-35, 40.19% id in 311 aa; hydrolase complement(2268827..2269741) Bordetella parapertussis 12822 1664716 NP_884379.1 CDS BPP2122 NC_002928.3 2269788 2270459 R Similar to Brucella melitensis transcriptional regulator, GntR family BMEII0281 SWALL:Q8YD96 (EMBL:AE009666) (238 aa) fasta scores: E(): 3e-14, 36% id in 200 aa, and to Vibrio cholerae transcriptional regulator, GntR family VC1335 SWALL:Q9KSC3 (EMBL:AE004213) (235 aa) fasta scores: E(): 1.7e-11, 34.09% id in 176 aa; GntR family transcriptional regulator complement(2269788..2270459) Bordetella parapertussis 12822 1664717 NP_884380.1 CDS BPP2123 NC_002928.3 2270649 2271152 R Similar to Salmonella typhi transcriptional regulator STY1005 SWALL:Q8Z7Z1 (EMBL:AL627268) (153 aa) fasta scores: E(): 4e-35, 66.66% id in 144 aa, and to Haemophilus influenzae leucine-responsive regulatory protein Lrp or HI1596 SWALL:LRP_HAEIN (SWALL:P45265) (166 aa) fasta scores: E(): 5.9e-11, 35.25% id in 139 aa; AsnC family transcriptional regulator complement(2270649..2271152) Bordetella parapertussis 12822 1664718 NP_884381.1 CDS BPP2124 NC_002928.3 2271387 2272589 R catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase complement(2271387..2272589) Bordetella parapertussis 12822 1664719 NP_884382.1 CDS BPP2125 NC_002928.3 2272962 2274146 D Similar to Rhizobium loti hippurate hydrolase MLR7940 SWALL:Q984M2 (EMBL:AP003013) (379 aa) fasta scores: E(): 1.8e-77, 56.34% id in 378 aa, and to Arabidopsis thaliana IAA-amino acid hydrolase 3 precursor Iar3 or ILL1 or AT5G56650 or MIK19.10 SWALL:ILR3_ARATH (SWALL:P54969) (438 aa) fasta scores: E(): 7e-38, 35.32% id in 385 aa; peptidase 2272962..2274146 Bordetella parapertussis 12822 1664720 NP_884383.1 CDS BPP2126 NC_002928.3 2274143 2275153 D Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein ATU1577 or AGR_C_2905 SWALL:AAL42581 (EMBL:AE009115) (343 aa) fasta scores: E(): 9.3e-68, 51.32% id in 341 aa, and to Escherichia coli O157:H7 amino-acid ABC transporter binding protein YhdW precursor or Z4629 or ECS4141 SWALL:YHDW_ECO57 (SWALL:P58068) (341 aa) fasta scores: E(): 2.7e-64, 48.97% id in 341 aa; ABC transporter substrate-binding protein 2274143..2275153 Bordetella parapertussis 12822 1664721 NP_884384.1 CDS BPP2127 NC_002928.3 2275284 2276495 D Similar to Brucella melitensis general L-amino acid transport system permease AapQ BMEI1210 SWALL:Q8YGE9 (EMBL:AE009560) (397 aa) fasta scores: E(): 3.9e-62, 48.34% id in 393 aa, and to Rhizobium leguminosarum general L-amino acid transport system permease AapQ SWALL:AAPQ_RHILV (SWALL:Q52813) (400 aa) fasta scores: E(): 1.3e-55, 47.66% id in 386 aa; ABC transporter 2275284..2276495 Bordetella parapertussis 12822 1664722 NP_884385.1 CDS BPP2128 NC_002928.3 2276508 2277662 D Similar to Rhizobium meliloti probable general L-amino acid transport permease ABC transporter protein AapM or R01476 or SMC02120 SWALL:Q92Q73 (EMBL:AL591787) (384 aa) fasta scores: E(): 3.6e-72, 51.68% id in 385 aa, and to Rhizobium leguminosarum general L-amino acid transport system permease AapM SWALL:AAPM_RHILV (SWALL:Q52814) (384 aa) fasta scores: E(): 2.8e-67, 47.92% id in 386 aa; ABC transporter 2276508..2277662 Bordetella parapertussis 12822 1664723 NP_884386.1 CDS BPP2129 NC_002928.3 2277668 2278456 D Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase ATU1580 or AGR_C_2909 SWALL:AAK87363 (EMBL:AE009115) (257 aa) fasta scores: E(): 1.1e-63, 69.29% id in 254 aa, and to Rhizobium leguminosarum general L-amino acid transport ATP-binding protein AapP SWALL:AAPP_RHILV (SWALL:Q52815) (257 aa) fasta scores: E(): 8.8e-63, 70.12% id in 241 aa; ABC transporter ATP-binding protein 2277668..2278456 Bordetella parapertussis 12822 1668972 NP_884387.1 CDS BPP2130 NC_002928.3 2278541 2278885 D Low similarity to Vibrio cholerae hypothetical protein VC0198 SWALL:Q9KVE8 (EMBL:AE004110) (125 aa) fasta scores: E(): 0.00022, 27.92% id in 111 aa; hypothetical protein 2278541..2278885 Bordetella parapertussis 12822 1668973 NP_884388.1 CDS BPP2131 NC_002928.3 2278905 2280128 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(2278905..2280128) Bordetella parapertussis 12822 1668974 NP_884389.1 CDS BPP2132 NC_002928.3 2280150 2281142 R Similar to Agrobacterium tumefaciens phosphoglycerate dehydrogenase SerA or ATU5328 or AGR_PAT_470 SWALL:AAL46016 (EMBL:AE008954) (354 aa) fasta scores: E(): 4.8e-34, 38.65% id in 313 aa, and to Methanococcus jannaschii D-3-phosphoglycerate dehydrogenase SerA or MJ1018 SWALL:SERA_METJA (SWALL:Q58424) (524 aa) fasta scores: E(): 2.4e-29, 34.76% id in 325 aa; dehydrogenase complement(2280150..2281142) Bordetella parapertussis 12822 1668975 NP_884390.1 CDS BPP2133 NC_002928.3 2281139 2282413 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(2281139..2282413) Bordetella parapertussis 12822 1668976 NP_884391.1 CDS BPP2134 NC_002928.3 2282418 2283215 R Similar to Pyrococcus horikoshii 238aa long hypothetical arylmalonate decarboxylase PH0985 SWALL:O58713 (EMBL:AP000004) (238 aa) fasta scores: E(): 1.2e-33, 44.62% id in 242 aa, and to Bordetella bronchiseptica arylmalonate decarboxylase SWALL:AMDA_BORBR (SWALL:Q05115) (240 aa) fasta scores: E(): 1.4e-15, 36.7% id in 237 aa; decarboxylase complement(2282418..2283215) Bordetella parapertussis 12822 1668977 NP_884392.1 CDS BPP2135 NC_002928.3 2283215 2284009 R Similar to Staphylococcus aureus hypothetical protein SAV0122 or SA0118 SWALL:Q99X93 (EMBL:AP003358) (259 aa) fasta scores: E(): 1.2e-18, 30.7% id in 254 aa, and to Salmonella typhimurium, and Salmonella typhi 2-dehydro-3-deoxy-galactarate aldolase GarL or STM3249 or STY3431 SWALL:Q8XGF9 (EMBL:AE008849) (256 aa) fasta scores: E(): 7.6e-17, 28.93% id in 235 aa; aldolase complement(2283215..2284009) Bordetella parapertussis 12822 1668978 NP_884393.1 CDS BPP2136 NC_002928.3 2284006 2284800 R Similar to Synechocystis sp. hypothetical protein SLR0596 SWALL:P74740 (EMBL:D90917) (273 aa) fasta scores: E(): 2.1e-11, 28.03% id in 264 aa, and to Listeria monocytogenes hypothetical protein LMO1968 SWALL:Q8Y5T7 (EMBL:AL591981) (247 aa) fasta scores: E(): 3.8e-10, 24.49% id in 245 aa; creatinine amidohydrolase complement(2284006..2284800) Bordetella parapertussis 12822 1668979 NP_884394.1 CDS BPP2137 NC_002928.3 2284839 2285807 R Similar to Agrobacterium tumefaciens hypothetical protein ATU5330 or AGR_PAT_473 SWALL:AAK90704 (EMBL:AE008955) (318 aa) fasta scores: E(): 3.3e-33, 36.9% id in 317 aa. Also similar to BPP2138 (320 aa) fasta scores: E(): 5e-46, 48.387% identity in 310 aa overlap; hypothetical protein complement(2284839..2285807) Bordetella parapertussis 12822 1668980 NP_884395.1 CDS BPP2138 NC_002928.3 2285804 2286763 R Similar to Agrobacterium tumefaciens hypothetical protein ATU5330 or AGR_PAT_473 SWALL:AAL46018 (EMBL:AE008955) (318 aa) fasta scores: E(): 1.7e-31, 33.88% id in 304 aa. Also similar to BPP2137 (323 aa) fasta scores: 48.387% identity in 310 aa overlap; hypothetical protein complement(2285804..2286763) Bordetella parapertussis 12822 1667470 NP_884396.1 CDS BPP2139 NC_002928.3 2286970 2287869 D Similar to Bordetella pertussis Brg1 SWALL:O30441 (EMBL:AF006000) (291 aa) fasta scores: E(): 4.1e-39, 43.9% id in 287 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA0816 SWALL:Q9I5C3 (EMBL:AE004516) (294 aa) fasta scores: E(): 1e-34, 41.94% id in 298 aa; LysR family transcriptional regulator 2286970..2287869 Bordetella parapertussis 12822 1667471 NP_884397.1 CDS BPP2140 NC_002928.3 2287961 2288536 D Similar to Pseudomonas aeruginosa hypothetical protein Pa2134 SWALL:Q9I1Y1 (EMBL:AE004641) (190 aa) fasta scores: E(): 9.1e-17, 47.13% id in 157 aa, and to Deinococcus radiodurans hypothetical protein Dr1385 SWALL:Q9RUK1 (EMBL:AE001984) (163 aa) fasta scores: E(): 1.4e-05, 30% id in 150 aa; hypothetical protein 2287961..2288536 Bordetella parapertussis 12822 1667472 NP_884398.1 CDS BPP2141 NC_002928.3 2288758 2290473 D Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical membrane protein YbjL or B0847 or Z1074 or ECS0927 SWALL:YBJL_ECOLI (SWALL:P75812) (561 aa) fasta scores: E(): 4.3e-39, 30.09% id in 555 aa, and to Salmonella typhi hypothetical membrane protein YbjL or STY0903 SWALL:Q8Z851 (EMBL:AL627268) (561 aa) fasta scores: E(): 1.4e-38, 30.75% id in 569 aa; hypothetical protein 2288758..2290473 Bordetella parapertussis 12822 1667473 NP_884399.1 CDS BPP2142 NC_002928.3 2290470 2291360 R Similar to Pectobacterium carotovorum subsp. carotovorum HexA SWALL:O85272 (EMBL:AF057063) (316 aa) fasta scores: E(): 1.3e-44, 46.01% id in 276 aa, and to Erwinia chrysanthemi Pectinase gene transcriptional regulator PecT SWALL:PECT_ERWCH (SWALL:P52662) (316 aa) fasta scores: E(): 1.8e-43, 45.87% id in 279 aa; LysR family transcriptional regulator complement(2290470..2291360) Bordetella parapertussis 12822 1667474 NP_884400.1 CDS BPP2143 NC_002928.3 2291468 2292058 D hypothetical protein 2291468..2292058 Bordetella parapertussis 12822 1664893 NP_884401.1 CDS BPP2144 NC_002928.3 2292060 2293661 D Similar to Pseudomonas aeruginosa probable thiosulfate sulfurtransferase PA2603 SWALL:Q9I0N4 (EMBL:AE004689) (527 aa) fasta scores: E(): 1.3e-73, 45.89% id in 499 aa, and to Agrobacterium tumefaciens hypothetical protein ATU6089 or AGR_PTI_BX104 SWALL:AAL46325 (EMBL:AE009427) (395 aa) fasta scores: E(): 8.6e-41, 44.26% id in 314 aa; transferase 2292060..2293661 Bordetella parapertussis 12822 1664894 NP_884402.1 CDS BPP2146 NC_002928.3 2294915 2295946 D Low similarity to Rhizobium loti hypothetical protein MLR7142 SWALL:Q987A0 (EMBL:AP003011) (349 aa) fasta scores: E(): 1.2e-13, 26.73% id in 303 aa, and to Halobacterium sp. succinate dehydrogenase subunit Sdh or VNG2106G SWALL:Q9HNH1 (EMBL:AE005100) (318 aa) fasta scores: E(): 2.6e-12, 30.44% id in 312 aa; hypothetical protein 2294915..2295946 Bordetella parapertussis 12822 1664896 NP_884403.1 CDS BPP2147 NC_002928.3 2296001 2296993 D Similar to Rhizobium meliloti hypothetical protein RA1058 or SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 4.3e-42, 43.97% id in 332 aa, and to Agrobacterium tumefaciens hypothetical protein ATU4727 or AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 2.7e-39, 42.46% id in 325 aa; hypothetical protein 2296001..2296993 Bordetella parapertussis 12822 1664897 NP_884404.1 CDS bisC NC_002928.3 2297054 2299393 D Similar to Mycobacterium tuberculosis BisC or Rv1442 or MTCY493.12c or MT1487 SWALL:O06817 (EMBL:Z95844) (766 aa) fasta scores: E(): 2.2e-150, 51.63% id in 765 aa, and to Escherichia coli biotin sulfoxide reductase BisC or B3551 SWALL:BISC_ECOLI (SWALL:P20099) (777 aa) fasta scores: E(): 8.1e-71, 38.18% id in 770 aa; biotin sulfoxide reductase 2297054..2299393 Bordetella parapertussis 12822 1664898 NP_884405.1 CDS BPP2149 NC_002928.3 2299406 2300206 R Similar to Pyrococcus abyssi hydrolase related PAB1449 SWALL:Q9UYV8 (EMBL:AJ248287) (262 aa) fasta scores: E(): 2.4e-20, 37.11% id in 229 aa, and to Pseudomonas aeruginosa hypothetical protein PA2074 SWALL:Q9I241 (EMBL:AE004634) (270 aa) fasta scores: E(): 3.1e-19, 34.44% id in 270 aa; hypothetical protein complement(2299406..2300206) Bordetella parapertussis 12822 1664899 NP_884406.1 CDS BPP2150 NC_002928.3 2300220 2300972 R Similar to Streptococcus pneumoniae branched-chain amino acid ABC transporter, ATP-binding protein SP0753 SWALL:Q97RP6 (EMBL:AE007382) (236 aa) fasta scores: E(): 1.6e-28, 42.24% id in 232 aa, and to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraG or PA1070 SWALL:BRAG_PSEAE (SWALL:P21630) (233 aa) fasta scores: E(): 5.2e-28, 42.66% id in 225 aa; amino acid ABC transporter ATP-binding protein complement(2300220..2300972) Bordetella parapertussis 12822 1664900 NP_884407.1 CDS BPP2151 NC_002928.3 2300965 2301768 R Similar to Synechocystis sp. high-affinity branched-chain amino acid transport ATP-binding protein BraF or SLR0467 SWALL:Q55164 (EMBL:D64001) (267 aa) fasta scores: E(): 1.3e-32, 47.05% id in 255 aa, to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraF or PA1071 SWALL:BRAF_PSEAE (SWALL:P21629) (255 aa) fasta scores: E(): 6.6e-29, 40.87% id in 252 aa, and to Escherichia coli, and Escherichia coli O157:H7 high-affinity branched-chain amino acid transport ATP-binding protein LivG or B3455 or Z4825 or ECS4302 SWALL:LIVG_ECOLI (SWALL:P22730) (255 aa) fasta scores: E(): 6.4e-25, 36.5% id in 252 aa; amino acid ABC transporter ATP-binding protein complement(2300965..2301768) Bordetella parapertussis 12822 1664901 NP_884408.1 CDS BPP2152 NC_002928.3 2301765 2302769 R Similar to Rhizobium leguminosarum integral membrane protein Bra2E SWALL:Q8VM84 (EMBL:AJ427840) (331 aa) fasta scores: E(): 5.8e-35, 40.39% id in 307 aa, and to Archaeoglobus fulgidus branched-chain amino acid ABC transporter, permease AF0824 SWALL:O29434 (EMBL:AE001047) (323 aa) fasta scores: E(): 1.5e-27, 31.51% id in 311 aa; amino acid ABC transporter complement(2301765..2302769) Bordetella parapertussis 12822 1666415 NP_884409.1 CDS BPP2153 NC_002928.3 2302766 2303638 R Similar to Deinococcus radiodurans branched-chain amino acid ABC transporter, permease DR0281 SWALL:Q9RXM9 (EMBL:AE001889) (285 aa) fasta scores: E(): 4.6e-31, 34.64% id in 280 aa, and to Brucella melitensis high-affinity branched-chain amino acid transport system permease LivH / high-affinity branched-chain amino acid transport ATP-binding protein LivG BMEII0874 SWALL:Q8YBM5 (EMBL:AE009721) (916 aa) fasta scores: E(): 2.9e-30, 37.67% id in 292 aa; amino acid ABC transporter complement(2302766..2303638) Bordetella parapertussis 12822 1666416 NP_884410.1 CDS BPP2154 NC_002928.3 2303703 2304842 R Similar to Fusobacterium nucleatum subsp. nucleatum ATCC 25586 leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein FN1432 SWALL:AAL95625 (EMBL:AE010648) (383 aa) fasta scores: E(): 3.7e-25, 29.88% id in 348 aa, and to Pseudomonas aeruginosa leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor BraC or PA1074 SWALL:BRAC_PSEAE (SWALL:P21175) (373 aa) fasta scores: E(): 1.3e-21, 27.37% id in 358 aa; amino acid ABC transporter substrate-binding protein complement(2303703..2304842) Bordetella parapertussis 12822 1666417 NP_884411.1 CDS BPP2155 NC_002928.3 2304996 2305316 R hypothetical protein complement(2304996..2305316) Bordetella parapertussis 12822 1666418 NP_884412.1 CDS BPP2156 NC_002928.3 2305607 2305810 D hypothetical protein 2305607..2305810 Bordetella parapertussis 12822 1666419 NP_884413.1 CDS BPP2157 NC_002928.3 2305931 2307232 D Similar to Borrelia burgdorferi UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA or BB0472 SWALL:MURA_BORBU (SWALL:O51428) (427 aa) fasta scores: E(): 1.8e-47, 32.55% id in 430 aa, and to Escherichia coli udp-N-acetylglucosamine 1-carboxyvinyltransferase MurA or MurZ or B3189 SWALL:MURA_ECOLI (SWALL:P28909) (419 aa) fasta scores: E(): 7.2e-29, 30.07% id in 429 aa; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2305931..2307232 Bordetella parapertussis 12822 1666420 NP_884414.1 CDS BPP2158 NC_002928.3 2307273 2307815 R Similar to Pseudomonas aeruginosa hypothetical protein PA2301 SWALL:Q9I1H4 (EMBL:AE004656) (180 aa) fasta scores: E(): 9.6e-41, 66.1% id in 177 aa, and to Streptomyces coelicolor conserved hypothetical protein SCBAC36F5.22c SWALL:Q93IV9 (EMBL:AL592292) (185 aa) fasta scores: E(): 7e-19, 43.5% id in 177 aa; hypothetical protein complement(2307273..2307815) Bordetella parapertussis 12822 1666421 NP_884415.1 CDS BPP2159 NC_002928.3 2307860 2309710 R ortholog of Bordetella pertussis (BX470248) BP0872; ABC transporter ATP-binding protein complement(2307860..2309710) Bordetella parapertussis 12822 1666422 NP_884416.1 CDS tpm NC_002928.3 2310091 2310750 D catalyzes the S-adenosylmethionine-dependent transmethylation of thiopurine compounds; may be involved in selenium cycling by forming dimethylselenide and/or dimethyldiselenide; thiopurine S-methyltransferase 2310091..2310750 Bordetella parapertussis 12822 1666423 NP_884417.1 CDS vir-18 NC_002928.3 2310838 2310993 D ortholog of Bordetella pertussis (BX470248) BP0874; vir-repressed protein 2310838..2310993 Bordetella parapertussis 12822 1666424 NP_884418.1 CDS BPP2162 NC_002928.3 2311102 2311269 D ortholog of Bordetella pertussis (BX470248) BP0875; hypothetical protein 2311102..2311269 Bordetella parapertussis 12822 1668265 NP_884419.1 CDS BPP2163 NC_002928.3 2311281 2311847 R ortholog of Bordetella pertussis (BX470248) BP0876; lipoprotein complement(2311281..2311847) Bordetella parapertussis 12822 1668266 NP_884420.1 CDS BPP2164 NC_002928.3 2312243 2312959 D ortholog of Bordetella pertussis (BX470248) BP0877; hypothetical protein 2312243..2312959 Bordetella parapertussis 12822 1668267 NP_884421.1 CDS BPP2165 NC_002928.3 2312975 2314276 R ortholog of Bordetella pertussis (BX470248) BP0878; phospholipase complement(2312975..2314276) Bordetella parapertussis 12822 1668268 NP_884422.1 CDS BPP2166 NC_002928.3 2314411 2315913 R ortholog of Bordetella pertussis (BX470248) BP0879; aldehyde dehydrogenase complement(2314411..2315913) Bordetella parapertussis 12822 1668269 NP_884423.1 CDS BPP2167 NC_002928.3 2316432 2319320 D ortholog of Bordetella pertussis (BX470248) BP0880; hypothetical protein 2316432..2319320 Bordetella parapertussis 12822 1668270 NP_884424.1 CDS BPP2168 NC_002928.3 2319544 2320896 D ortholog of Bordetella pertussis (BX470248) BP0882; hypothetical protein 2319544..2320896 Bordetella parapertussis 12822 1668271 NP_884425.1 CDS BPP2169 NC_002928.3 2320925 2321437 D ortholog of Bordetella pertussis (BX470248) BP0883; biotin carboxyl carrier protein 2320925..2321437 Bordetella parapertussis 12822 1668272 NP_884426.1 CDS BPP2170 NC_002928.3 2321434 2322888 D ortholog of Bordetella pertussis (BX470248) BP0884; carboxylase 2321434..2322888 Bordetella parapertussis 12822 1668273 NP_884427.1 CDS BPP2171 NC_002928.3 2322923 2323231 D ortholog of Bordetella pertussis (BX470248) BP0885; hypothetical protein 2322923..2323231 Bordetella parapertussis 12822 1667231 NP_884428.1 CDS BPP2172 NC_002928.3 2323277 2324152 D ortholog of Bordetella pertussis (BX470248) BP0886; hypothetical protein 2323277..2324152 Bordetella parapertussis 12822 1667232 NP_884429.1 CDS BPP2173 NC_002928.3 2324178 2325233 D ortholog of Bordetella pertussis (BX470248) BP0887; hypothetical protein 2324178..2325233 Bordetella parapertussis 12822 1667233 NP_884430.1 CDS BPP2174 NC_002928.3 2325246 2326037 D ortholog of Bordetella pertussis (BX470248) BP0888; GntR family transcriptional regulator 2325246..2326037 Bordetella parapertussis 12822 1667234 NP_884431.1 CDS accC NC_002928.3 2326070 2327440 D ortholog of Bordetella pertussis (BX470248) BP0889; biotin carboxylase 2326070..2327440 Bordetella parapertussis 12822 1667235 NP_884432.1 CDS BPP2176 NC_002928.3 2327456 2328991 D ortholog of Bordetella pertussis (BX470248) BP0890; acyl-CoA carboxylase 2327456..2328991 Bordetella parapertussis 12822 1667236 NP_884433.1 CDS BPP2177 NC_002928.3 2329037 2329258 D Similar to Bacillus subtilis YngXX SWALL:Q9R9I3 (EMBL:AF184956) (73 aa) fasta scores: E(): 2.2e-08, 48.52% id in 68 aa, and to Mycobacterium tuberculosis biotinylated protein TB7.3 Rv3221c or MT3317 or MTCY07D11.05 SWALL:BTB7_MYCTU (SWALL:O05845) (70 aa) fasta scores: E(): 2.1e-06, 45.58% id in 68 aa, and to Streptococcus mutans biotin carboxyl carrier protein SWALL:BCCP_STRMU (SWALL:P29337) (130 aa) fasta scores: E(): 0.00013, 42.62% id in 61 aa; biotinylated protein 2329037..2329258 Bordetella parapertussis 12822 1667237 NP_884434.1 CDS BPP2178 NC_002928.3 2329255 2329980 D Similar to Pyrococcus furiosus DSM 3638 acetyl-CoA synthetase PF1787 SWALL:AAL81911 (EMBL:AE010276) (232 aa) fasta scores: E(): 2.8e-30, 44.73% id in 228 aa, and to Thermoplasma volcanium succinyl CoA synthetase alpha subunit TV1257 or TVG1294312 SWALL:Q979A5 (EMBL:AP000995) (693 aa) fasta scores: E(): 2e-26, 38.07% id in 239 aa; acetyl-CoA synthetase 2329255..2329980 Bordetella parapertussis 12822 1667238 NP_884435.1 CDS BPP2180 NC_002928.3 2331523 2332530 D Similar to Bacillus halodurans C4-dicarboxylate transport system BH0701 SWALL:Q9KEZ8 (EMBL:AP001509) (341 aa) fasta scores: E(): 8e-24, 31.78% id in 302 aa, and to Rhodobacter capsulatus C4-dicarboxylate-binding periplasmic protein precursor DctP SWALL:DCTP_RHOCA (SWALL:P37735) (333 aa) fasta scores: E(): 1.9e-22, 32.24% id in 307 aa; solute-binding protein 2331523..2332530 Bordetella parapertussis 12822 1667240 NP_884436.1 CDS BPP2181 NC_002928.3 2332633 2333190 D Similar to Salmonella typhimurium C4-dicarboxylate transport system STM4053 SWALL:Q8ZKR9 (EMBL:AE008889) (171 aa) fasta scores: E(): 2.5e-08, 25.18% id in 135 aa, and to Rhizobium meliloti C4-dicarboxylate small membrane transport protein DctQ or RB0928 or SMB21352 SWALL:Q92V06 (EMBL:AL603645) (165 aa) fasta scores: E(): 2.2e-07, 28.36% id in 141 aa; hypothetical protein 2332633..2333190 Bordetella parapertussis 12822 1667241 NP_884437.1 CDS BPP2182 NC_002928.3 2333208 2334494 D Similar to Caulobacter crescentus DedA family protein CC1448 SWALL:Q9A8A6 (EMBL:AE005819) (426 aa) fasta scores: E(): 3.9e-49, 38.31% id in 428 aa, and to Pseudomonas aeruginosa probable C4-dicarboxylate transporter PA5169 SWALL:Q9HU16 (EMBL:AE004929) (427 aa) fasta scores: E(): 5.3e-47, 34.5% id in 426 aa; hypothetical protein 2333208..2334494 Bordetella parapertussis 12822 1667242 NP_884438.1 CDS BPP2183 NC_002928.3 2334507 2335745 D Similar to Rhizobium meliloti transporter protein RB0262 or SMB20272 SWALL:Q92WR7 (EMBL:AL603642) (402 aa) fasta scores: E(): 7.5e-21, 27.52% id in 396 aa, and to Pseudomonas aeruginosa hypothetical protein PA2091 SWALL:Q9I224 (EMBL:AE004636) (427 aa) fasta scores: E(): 1.1e-16, 29.95% id in 424 aa; hypothetical protein 2334507..2335745 Bordetella parapertussis 12822 1666050 NP_884439.1 CDS BPP2184 NC_002928.3 2335846 2337078 D Similar to Burkholderia cepacia MopA SWALL:Q45081 (EMBL:U29532) (431 aa) fasta scores: E(): 5.5e-50, 42.53% id in 395 aa, and to Rhodococcus erythropolis rhodocoxin reductase ThcD SWALL:THCD_RHOER (SWALL:P43494) (426 aa) fasta scores: E(): 1.1e-42, 41.33% id in 404 aa; reductase 2335846..2337078 Bordetella parapertussis 12822 1666051 NP_884440.1 CDS BPP2185 NC_002928.3 2337177 2337587 D hypothetical protein 2337177..2337587 Bordetella parapertussis 12822 1666052 NP_884441.1 CDS BPP2186 NC_002928.3 2337614 2338423 D Similar to Pseudomonas aeruginosa 2-oxo-hept-3-ene-1,7-dioate hydratase HpcG or PA4127 SWALL:Q9HWQ4 (EMBL:AE004829) (267 aa) fasta scores: E(): 2.4e-64, 65.78% id in 266 aa, and to Escherichia coli 2-oxo-hepta-3-ene-1,7-dioic acid hydratase HpcG SWALL:HPCG_ECOLI (SWALL:P42270) (264 aa) fasta scores: E(): 2e-57, 58.27% id in 266 aa; decarboxylase 2337614..2338423 Bordetella parapertussis 12822 1666053 NP_884442.1 CDS BPP2187 NC_002928.3 2338606 2339550 D Similar to Ralstonia solanacearum probable transcription regulator protein RSP0910 or RS01682 SWALL:Q8XRE4 (EMBL:AL646081) (309 aa) fasta scores: E(): 1.5e-38, 40.67% id in 295 aa, and to Brucella melitensis transcriptional regulatory protein, LysR family BMEII1065 SWALL:Q8YB36 (EMBL:AE009739) (325 aa) fasta scores: E(): 3.5e-33, 36.36% id in 297 aa; LysR family transcriptional regulator 2338606..2339550 Bordetella parapertussis 12822 1666054 NP_884443.1 CDS BPP2188 NC_002928.3 2339547 2340446 R Similar to Rhizobium loti hypothetical protein MLR0868 SWALL:Q98LU9 (EMBL:AP002995) (293 aa) fasta scores: E(): 1.5e-46, 45.1% id in 286 aa, and to Xylella fastidiosa hypothetical protein XF2573 SWALL:Q9PAE5 (EMBL:AE004064) (311 aa) fasta scores: E(): 8.1e-23, 28.47% id in 288 aa; hypothetical protein complement(2339547..2340446) Bordetella parapertussis 12822 1666055 NP_884444.1 CDS ndoA NC_002928.3 2340631 2340954 D Similar to Pseudomonas aeruginosa naphthalene 1,2-dioxygenase system ferredoxin component NdoA or PahA2 SWALL:NDOA_PSEAE (SWALL:Q51493) (103 aa) fasta scores: E(): 1.9e-22, 57% id in 100 aa, and to Escherichia coli, and Escherichia coli O157:H7 3-phenylpropionate dioxygenase ferredoxin subunit HcaC or PhdB or HcaA3 or B2540 or Z3811 or ECS3406 SWALL:HCAC_ECOLI (SWALL:P77266) (106 aa) fasta scores: E(): 4.6e-10, 41.86% id in 86 aa; ferredoxin 2340631..2340954 Bordetella parapertussis 12822 1666056 NP_884445.1 CDS BPP2190 NC_002928.3 2341076 2341939 D Similar to Salmonella typhimurium fumarylacetoacetate STM0331 SWALL:Q8ZRI8 (EMBL:AE008710) (292 aa) fasta scores: E(): 2.5e-37, 43.55% id in 287 aa, and to Burkholderia cepacia trihydroxytoluene oxygenase DntG SWALL:Q8VUC7 (EMBL:AF169302) (281 aa) fasta scores: E(): 2.8e-34, 40% id in 285 aa; oxygenase 2341076..2341939 Bordetella parapertussis 12822 1666203 NP_884446.1 CDS BPP2191 NC_002928.3 2341951 2342949 D Similar to Halobacterium sp. ornithine cyclodeaminase Ocd2 or VNG1364G SWALL:Q9HQ24 (EMBL:AE005056) (328 aa) fasta scores: E(): 2.3e-20, 30.3% id in 330 aa, and to Rhizobium meliloti ornithine cyclodeaminase 2 Ocd2 or RA1029 or SMA1871 SWALL:OCD2_RHIME (SWALL:P58339) (342 aa) fasta scores: E(): 1.9e-13, 26.76% id in 325 aa; cyclodeaminase 2341951..2342949 Bordetella parapertussis 12822 1666204 NP_884447.1 CDS BPP2192 NC_002928.3 2342977 2344095 D Low similarity to Bacillus halodurans gentisate 1,2-dioxygenase BH2004 SWALL:Q9KBC4 (EMBL:AP001514) (365 aa) fasta scores: E(): 7.4e-06, 25.32% id in 304 aa; dioxygenase 2342977..2344095 Bordetella parapertussis 12822 1666205 NP_884448.1 CDS BPP2193 NC_002928.3 2344103 2344621 D Similar to Sphingomonas aromaticivorans small subunit aromatic oxygenase BphA2D SWALL:O85985 (EMBL:AF079317) (162 aa) fasta scores: E(): 3e-16, 35.76% id in 137 aa, and to Escherichia coli 3-phenylpropionate dioxygenase beta subunit HcaF or PhdC2 or HcaB or HcaA2 or DigB or B2539 SWALL:HCAF_ECOLI (SWALL:Q47140) (172 aa) fasta scores: E(): 2.5, 27.27% id in 99 aa; dioxygenase small subunit 2344103..2344621 Bordetella parapertussis 12822 1666206 NP_884449.1 CDS BPP2196 NC_002928.3 2347202 2348065 D Similar to Rhodopseudomonas palustris ABC transporter subunit HbaF SWALL:O07469 (EMBL:U75364) (286 aa) fasta scores: E(): 4.1e-38, 39.37% id in 287 aa, and to Brucella melitensis high-affinity branched-chain amino acid transport system permease Livh BMEII0632 SWALL:Q8YCA0 (EMBL:AE009699) (289 aa) fasta scores: E(): 1.2e-33, 38.88% id in 288 aa. Note: This CDS has 19 residues overlap in its N-terminal region with the CDS upstream of it; possible alternative start codon at residue 20; ABC transporter 2347202..2348065 Bordetella parapertussis 12822 1666209 NP_884450.1 CDS BPP2197 NC_002928.3 2348068 2349069 D Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein ATU4127 or AGR_L_1453 SWALL:AAL44927 (EMBL:AE009343) (335 aa) fasta scores: E(): 8.6e-34, 41.11% id in 287 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein RSC3340 or RS02575 SWALL:Q8XU53 (EMBL:AL646074) (328 aa) fasta scores: E(): 6.1e-31, 38.62% id in 321 aa; ABC transporter 2348068..2349069 Bordetella parapertussis 12822 1666210 NP_884451.1 CDS BPP2198 NC_002928.3 2349066 2349809 D Similar to Brucella melitensis high-affinity branched-chain amino acid transport ATP-binding protein LivG BMEII0066 SWALL:Q8YDV8 (EMBL:AE009645) (251 aa) fasta scores: E(): 1.6e-33, 44.62% id in 242 aa, and to Ralstonia solanacearum probable ATP-binding ABC transporter protein RSC3344 or RS02581 SWALL:Q8XU49 (EMBL:AL646074) (256 aa) fasta scores: E(): 5e-28, 44.62% id in 242 aa, and to Escherichia coli, and Escherichia coli O157:H7 high-affinity branched-chain amino acid transport ATP-binding protein LivG or B3455 or Z4825 or ECS4302 SWALL:LIVG_ECOLI (SWALL:P22730) (255 aa) fasta scores: E(): 1.3e-22, 39.35% id in 249 aa; ABC transporter ATP-binding protein 2349066..2349809 Bordetella parapertussis 12822 1666715 NP_884452.1 CDS BPP2199 NC_002928.3 2349809 2350504 D Similar to Rhodopseudomonas palustris ABC transporter subunit HbaH SWALL:O07467 (EMBL:U75364) (240 aa) fasta scores: E(): 3.9e-36, 51.5% id in 233 aa, and to Rhizobium meliloti ATP-binding ABC transporter protein R02974 or SMC03119 SWALL:Q92LQ6 (EMBL:AL591792) (233 aa) fasta scores: E(): 2.9e-32, 47.61% id in 231 aa, and to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivF or B3454 SWALL:LIVF_ECOLI (SWALL:P22731) (237 aa) fasta scores: E(): 5.5e-27, 41.99% id in 231 aa; ABC transporter ATP-binding protein 2349809..2350504 Bordetella parapertussis 12822 1666716 NP_884453.1 CDS BPP2200 NC_002928.3 2350513 2351256 D Similar to Pseudomonas aeruginosa probable short-chain dehydrogenase PA128 SWALL:Q9HZ96 (EMBL:AE004737) (248 aa) fasta scores: E(): 2.8e-39, 54.06% id in 246 aa, and to Escherichia coli hypothetical oxidoreductase YgfF or B2902 SWALL:YGFF_ECOLI (SWALL:P52037) (247 aa) fasta scores: E(): 5.1e-33, 49.58% id in 242 aa; oxidoreductase 2350513..2351256 Bordetella parapertussis 12822 1666717 NP_884454.1 CDS BPP2201 NC_002928.3 2351292 2352887 R Similar to Pseudomonas sp. acylase Acy 1 SWALL:PAC1_PSESV (SWALL:Q05053) (557 aa) fasta scores: E(): 5.2e-38, 35.19% id in 537 aa, and to Escherichia coli gamma-glutamyltranspeptidase precursor Ggt or b3447 SWALL:GGT_ECOLI (SWALL:P18956) (580 aa) fasta scores: E(): 5.2e-28, 30.38% id in 543 aa; glutamyltransferase complement(2351292..2352887) Bordetella parapertussis 12822 1666718 NP_884455.1 CDS BPP2202 NC_002928.3 2352910 2353881 R Similar to Rhizobium meliloti hypothetical protein RA1058 or SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.7e-41, 41.04% id in 307 aa, and to Agrobacterium tumefaciens hypothetical protein ATU4727 or AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 7.2e-40, 40.37% id in 322 aa; hypothetical protein complement(2352910..2353881) Bordetella parapertussis 12822 1666719 NP_884456.1 CDS BPP2203 NC_002928.3 2354069 2354725 D Similar to Rhizobium loti transcriptional regulator MLL6988 SWALL:Q987M8 (EMBL:AP003010) (220 aa) fasta scores: E(): 2.1e-37, 51.67% id in 209 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA5525 SWALL:Q9HT48 (EMBL:AE004965) (246 aa) fasta scores: E(): 3.1e-14, 35.67% id in 199 aa; GntR family transcriptional regulator 2354069..2354725 Bordetella parapertussis 12822 1665423 NP_884457.1 CDS BPP2204 NC_002928.3 2354841 2356118 D Similar to Rhizobium loti hypothetical protein MLL2144 SWALL:Q98J23 (EMBL:AP002999) (461 aa) fasta scores: E(): 4.2e-100, 61.61% id in 422 aa, and to Rhizobium meliloti hypothetical transmembrane protein SMC02590 or R00071 SWALL:Q92T96 (EMBL:AL591782) (434 aa) fasta scores: E(): 4.5e-56, 41.44% id in 415 aa; hypothetical protein 2354841..2356118 Bordetella parapertussis 12822 1665424 NP_884458.1 CDS BPP2205 NC_002928.3 2356120 2356683 R Similar to Rhizobium loti hypothetical protein MLR2142 SWALL:Q98J24 (EMBL:AP002999) (189 aa) fasta scores: E(): 9.9e-15, 34.97% id in 183 aa; hypothetical protein complement(2356120..2356683) Bordetella parapertussis 12822 1665425 NP_884459.1 CDS BPP2206 NC_002928.3 2356680 2357261 R Similar to the C-terminal region of Rhizobium loti hypothetical protein ML2141 SWALL:Q98J25 (EMBL:AP002999) (397 aa) fasta scores: E(): 7.6e-28, 47.31% id in 186 aa, and to Rhizobium meliloti hypothetical transmembrane protein R00073 or SMC02592 SWALL:Q92KU9 (EMBL:AL591782) (197 aa) fasta scores: E(): 1.2e-17, 41.04% id in 173 aa; hypothetical protein complement(2356680..2357261) Bordetella parapertussis 12822 1665426 NP_884460.1 CDS BPP2207 NC_002928.3 2357258 2357848 R Similar to Rhizobium meliloti hypothetical transmembrane protein R00074 or SMC02593 SWALL:Q92KU8 (EMBL:AL591782) (210 aa) fasta scores: E(): 5.8e-11, 36.12% id in 191 aa; hypothetical protein complement(2357258..2357848) Bordetella parapertussis 12822 1665427 NP_884461.1 CDS BPP2208 NC_002928.3 2358021 2359394 R hypothetical protein complement(2358021..2359394) Bordetella parapertussis 12822 1665428 NP_884462.1 CDS BPP2210 NC_002928.3 2360656 2361555 D Similar to Rhizobium loti probable transcriptional regulator MLL0238 SWALL:Q98N95 (EMBL:AP002994) (298 aa) fasta scores: E(): 1.6e-54, 54.42% id in 294 aa, and to Ralstonia solanacearum probable transcription regulator protein RSP1257 or RS05302 SWALL:Q8XQH0 (EMBL:AL646083) (329 aa) fasta scores: E(): 2.1e-22, 34.98% id in 303 aa; LysR family transcriptional regulator 2360656..2361555 Bordetella parapertussis 12822 1665430 NP_884463.1 CDS BPP2211 NC_002928.3 2361797 2362240 D ortholog of Bordetella pertussis (BX470248) BP2265; hypothetical protein 2361797..2362240 Bordetella parapertussis 12822 1664839 NP_884464.1 CDS bscF NC_002928.3 2362277 2362543 R ortholog of Bordetella pertussis (BX470248) BP2264; type III secretion protein complement(2362277..2362543) Bordetella parapertussis 12822 1664840 NP_884465.1 CDS bscE NC_002928.3 2362533 2362832 R ortholog of Bordetella pertussis (BX470248) BP2263; hypothetical protein complement(2362533..2362832) Bordetella parapertussis 12822 1664841 NP_884466.1 CDS bcrD NC_002928.3 2364228 2366282 R ortholog of Bordetella pertussis (BX470248) BP2261; type III secretion pore protein complement(2364228..2366282) Bordetella parapertussis 12822 1664843 NP_884467.1 CDS BPP2216 NC_002928.3 2366279 2366647 R ortholog of Bordetella pertussis (BX470248) BP2260; hypothetical protein complement(2366279..2366647) Bordetella parapertussis 12822 1664844 NP_884468.1 CDS BPP2217 NC_002928.3 2366644 2367054 R ortholog of Bordetella pertussis (BX470248) BP2259; hypothetical protein complement(2366644..2367054) Bordetella parapertussis 12822 1664845 NP_884469.1 CDS BPP2218 NC_002928.3 2367059 2367436 R ortholog of Bordetella pertussis (BX470248) BP2258; hypothetical protein complement(2367059..2367436) Bordetella parapertussis 12822 1664846 NP_884470.1 CDS bopN NC_002928.3 2367433 2368530 R ortholog of Bordetella pertussis (BX470248) BP2257; outer protein N complement(2367433..2368530) Bordetella parapertussis 12822 1664847 NP_884471.1 CDS bsp22 NC_002928.3 2368592 2369311 D ortholog of Bordetella pertussis (BX470248) BP2256; hypothetical protein 2368592..2369311 Bordetella parapertussis 12822 1664848 NP_884472.1 CDS BPP2221 NC_002928.3 2369334 2369609 D ortholog of Bordetella pertussis (BX470248) BP2255; hypothetical protein 2369334..2369609 Bordetella parapertussis 12822 1664849 NP_884473.1 CDS bcrH1 NC_002928.3 2369625 2370110 D ortholog of Bordetella pertussis (BX470248) BP2254; regulatory protein 2369625..2370110 Bordetella parapertussis 12822 1664850 NP_884474.1 CDS bopD NC_002928.3 2370158 2371099 D ortholog of Bordetella pertussis (BX470248) BP2253; outer protein D 2370158..2371099 Bordetella parapertussis 12822 1665452 NP_884475.1 CDS bopB NC_002928.3 2371123 2372331 D ortholog of Bordetella pertussis (BX470248) BP2252; outer protein B 2371123..2372331 Bordetella parapertussis 12822 1665453 NP_884476.1 CDS bcrH2 NC_002928.3 2372355 2372816 D ortholog of Bordetella pertussis (BX470248) BP2251; regulatory protein 2372355..2372816 Bordetella parapertussis 12822 1665454 NP_884477.1 CDS bcr4 NC_002928.3 2372821 2373348 D ortholog of Bordetella pertussis (BX470248) BP2250; hypothetical protein 2372821..2373348 Bordetella parapertussis 12822 1665455 NP_884478.1 CDS bscI NC_002928.3 2373345 2373773 D ortholog of Bordetella pertussis (BX470248) BP2249; type III secretion protein 2373345..2373773 Bordetella parapertussis 12822 1665456 NP_884479.1 CDS bscJ NC_002928.3 2373770 2374594 D ortholog of Bordetella pertussis (BX470248) BP2248; type III secretion protein 2373770..2374594 Bordetella parapertussis 12822 1665457 NP_884480.1 CDS bscK NC_002928.3 2374587 2375249 D ortholog of Bordetella pertussis (BX470248) BP2247; hypothetical protein 2374587..2375249 Bordetella parapertussis 12822 1665458 NP_884481.1 CDS bscL NC_002928.3 2375294 2375857 D ortholog of Bordetella pertussis (BX470248) BP2246; type III secretion system protein 2375294..2375857 Bordetella parapertussis 12822 1665459 NP_884482.1 CDS bscN NC_002928.3 2375862 2377196 D ortholog of Bordetella pertussis (BX470248) BP2245; type III secretion system ATPase 2375862..2377196 Bordetella parapertussis 12822 1665460 NP_884483.1 CDS bscO NC_002928.3 2377196 2377705 D ortholog of Bordetella pertussis (BX470248) BP2244; type III secretion protein 2377196..2377705 Bordetella parapertussis 12822 1667523 NP_884484.1 CDS bscP NC_002928.3 2377702 2378250 D ortholog of Bordetella pertussis (BX470248) BP2243; hypothetical protein 2377702..2378250 Bordetella parapertussis 12822 1667524 NP_884485.1 CDS bscQ NC_002928.3 2378247 2379326 D ortholog of Bordetella pertussis (BX470248) BP2241; type III secretion protein 2378247..2379326 Bordetella parapertussis 12822 1667525 NP_884486.1 CDS bscR NC_002928.3 2379323 2379994 D part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 2379323..2379994 Bordetella parapertussis 12822 1667526 NP_884487.1 CDS bscS NC_002928.3 2379991 2380266 D ortholog of Bordetella pertussis (BX470248) BP2239; type III secretion protein 2379991..2380266 Bordetella parapertussis 12822 1667527 NP_884488.1 CDS bscT NC_002928.3 2380278 2381078 D ortholog of Bordetella pertussis (BX470248) BP2238; type III secretion protein 2380278..2381078 Bordetella parapertussis 12822 1665345 NP_884489.1 CDS bscU NC_002928.3 2381075 2382124 D ortholog of Bordetella pertussis (BX470248) BP2237; type III secretion protein 2381075..2382124 Bordetella parapertussis 12822 1665346 NP_884490.1 CDS bscW NC_002928.3 2382121 2382519 D ortholog of Bordetella pertussis (BX470248) BP2236; hypothetical protein 2382121..2382519 Bordetella parapertussis 12822 1665347 NP_884491.1 CDS bscC NC_002928.3 2382510 2384312 D ortholog of Bordetella pertussis (BX470248) BP2235; type III secretion protein 2382510..2384312 Bordetella parapertussis 12822 1665348 NP_884492.1 CDS BPP2242 NC_002928.3 2385114 2385812 R ortholog of Bordetella pertussis (BX470248) BP2233; hypothetical protein complement(2385114..2385812) Bordetella parapertussis 12822 1665350 NP_884493.1 CDS BPP2243 NC_002928.3 2385849 2387333 D ortholog of Bordetella pertussis (BX470248) BP2232; hypothetical protein 2385849..2387333 Bordetella parapertussis 12822 1665351 NP_884494.1 CDS BPP2244 NC_002928.3 2387375 2388607 R ortholog of Bordetella pertussis (BX470248) BP2231; hypothetical protein complement(2387375..2388607) Bordetella parapertussis 12822 1665352 NP_884495.1 CDS BPP2245 NC_002928.3 2388604 2390625 R ortholog of Bordetella pertussis (BX470248) BP2230; regulator complement(2388604..2390625) Bordetella parapertussis 12822 1665502 NP_884496.1 CDS BPP2246 NC_002928.3 2390644 2393157 D ortholog of Bordetella pertussis (BX470248) BP2229; inner membrane transport protein 2390644..2393157 Bordetella parapertussis 12822 1665503 NP_884497.1 CDS alr NC_002928.3 2393154 2394317 R ortholog of Bordetella pertussis (BX470248) BP2228; alanine racemase, catabolic complement(2393154..2394317) Bordetella parapertussis 12822 1665504 NP_884498.1 CDS BPP2249 NC_002928.3 2394974 2395324 D ortholog of Bordetella pertussis (BX470248) BP2226; anti-sigma factor antagonist 2394974..2395324 Bordetella parapertussis 12822 1665506 NP_884499.1 CDS BPP2250 NC_002928.3 2395321 2396865 R ortholog of Bordetella pertussis (BX470248) BP2225; phospholipase complement(2395321..2396865) Bordetella parapertussis 12822 1665507 NP_884500.1 CDS BPP2252 NC_002928.3 2398291 2399511 D transposase for IS1001 element; transposase 2398291..2399511 Bordetella parapertussis 12822 1667283 NP_884501.1 CDS BPP2254 NC_002928.3 2401620 2401892 D ortholog of Bordetella pertussis (BX470248) BP2222; hypothetical protein 2401620..2401892 Bordetella parapertussis 12822 1667284 NP_884502.1 CDS BPP2255 NC_002928.3 2401962 2402726 R ortholog of Bordetella pertussis (BX470248) BP1553; hypothetical protein complement(2401962..2402726) Bordetella parapertussis 12822 1667285 NP_884503.1 CDS BPP2256 NC_002928.3 2402723 2403322 R ortholog of Bordetella pertussis (BX470248) BP1554; hypothetical protein complement(2402723..2403322) Bordetella parapertussis 12822 1667286 NP_884504.1 CDS BPP2257 NC_002928.3 2403427 2404278 R ortholog of Bordetella pertussis (BX470248) BP1555; hypothetical protein complement(2403427..2404278) Bordetella parapertussis 12822 1667287 NP_884505.1 CDS BPP2258 NC_002928.3 2404340 2404966 D ortholog of Bordetella pertussis (BX470248) BP1556; hypothetical protein 2404340..2404966 Bordetella parapertussis 12822 1667288 NP_884506.1 CDS BPP2259 NC_002928.3 2404999 2405670 D ortholog of Bordetella pertussis (BX470248) BP1571; hypothetical protein 2404999..2405670 Bordetella parapertussis 12822 1668257 NP_884507.1 CDS dapA NC_002928.3 2405756 2406661 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2405756..2406661 Bordetella parapertussis 12822 1668258 NP_884508.1 CDS BPP2261 NC_002928.3 2406667 2407800 D ortholog of Bordetella pertussis (BX470248) BP1569; lipoprotein 2406667..2407800 Bordetella parapertussis 12822 1668259 NP_884509.1 CDS fim3 NC_002928.3 2407888 2408514 R ortholog of Bordetella pertussis (BX470248) BP1568; serotype 3 fimbrial subunit precursor complement(2407888..2408514) Bordetella parapertussis 12822 1668260 NP_884510.1 CDS BPP2264 NC_002928.3 2409231 2410418 R ortholog of Bordetella pertussis (BX470248) BP1567; hypothetical protein complement(2409231..2410418) Bordetella parapertussis 12822 1668261 NP_884511.1 CDS mutS NC_002928.3 2410415 2413156 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(2410415..2413156) Bordetella parapertussis 12822 1665852 NP_884512.1 CDS BPP2266 NC_002928.3 2413267 2413482 D ortholog of Bordetella pertussis (BX470248) BP1565; hypothetical protein 2413267..2413482 Bordetella parapertussis 12822 1665853 NP_884513.1 CDS BPP2267 NC_002928.3 2413938 2414492 R ortholog of Bordetella pertussis (BX470248) BP1563; chromate reductase complement(2413938..2414492) Bordetella parapertussis 12822 1665854 NP_884514.1 CDS BPP2268 NC_002928.3 2414759 2415319 D ortholog of Bordetella pertussis (BX470248) BP1562; hypothetical protein 2414759..2415319 Bordetella parapertussis 12822 1665855 NP_884515.1 CDS BPP2269 NC_002928.3 2415431 2416735 D ortholog of Bordetella pertussis (BX470248) BP1561; hypothetical protein 2415431..2416735 Bordetella parapertussis 12822 1665856 NP_884516.1 CDS BPP2270 NC_002928.3 2416732 2418243 D ortholog of Bordetella pertussis (BX470248) BP1560; hypothetical protein 2416732..2418243 Bordetella parapertussis 12822 1665857 NP_884517.1 CDS BPP2271 NC_002928.3 2418240 2419361 D ortholog of Bordetella pertussis (BX470248) BP1559; hypothetical protein 2418240..2419361 Bordetella parapertussis 12822 1665858 NP_884518.1 CDS BPP2272 NC_002928.3 2419351 2420457 D ortholog of Bordetella pertussis (BX470248) BP1558; hypothetical protein 2419351..2420457 Bordetella parapertussis 12822 1665859 NP_884519.1 CDS BPP2273 NC_002928.3 2420563 2421396 D ortholog of Bordetella pertussis (BX470248) BP1898; hypothetical protein 2420563..2421396 Bordetella parapertussis 12822 1665860 NP_884520.1 CDS BPP2274 NC_002928.3 2421403 2422221 R ortholog of Bordetella pertussis (BX470248) BP1899; transcriptional regulator complement(2421403..2422221) Bordetella parapertussis 12822 1664982 NP_884521.1 CDS BPP2275 NC_002928.3 2422323 2423315 D ortholog of Bordetella pertussis (BX470248) BP1900; hypothetical protein 2422323..2423315 Bordetella parapertussis 12822 1664983 NP_884522.1 CDS BPP2276 NC_002928.3 2423471 2424247 R ortholog of Bordetella pertussis (BX470248) BP1901; methyltransferase complement(2423471..2424247) Bordetella parapertussis 12822 1664984 NP_884523.1 CDS suhB NC_002928.3 2424355 2425137 D ortholog of Bordetella pertussis (BX470248) BP1902; inositol-1-monophosphatase 2424355..2425137 Bordetella parapertussis 12822 1664985 NP_884524.1 CDS BPP2278 NC_002928.3 2425184 2426878 D ortholog of Bordetella pertussis (BX470248) BP1903; hypothetical protein 2425184..2426878 Bordetella parapertussis 12822 1664986 NP_884525.1 CDS uppP NC_002928.3 2426903 2427766 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 2426903..2427766 Bordetella parapertussis 12822 1666039 NP_884526.1 CDS lpxH NC_002928.3 2427921 2428697 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(2427921..2428697) Bordetella parapertussis 12822 1666040 NP_884527.1 CDS ppiB NC_002928.3 2428690 2429199 R ortholog of Bordetella pertussis (BX470248) BP1906; peptidyl-prolyl cis-trans isomerase B complement(2428690..2429199) Bordetella parapertussis 12822 1666041 NP_884528.1 CDS BPP2282 NC_002928.3 2429328 2430011 R ortholog of Bordetella pertussis (BX470248) BP1907; hypothetical protein complement(2429328..2430011) Bordetella parapertussis 12822 1666042 NP_884529.1 CDS cysS NC_002928.3 2430053 2431708 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2430053..2431708 Bordetella parapertussis 12822 1666043 NP_884530.1 CDS BPP2284 NC_002928.3 2431729 2432373 D ortholog of Bordetella pertussis (BX470248) BP1909; DNA-3-methyladenine glycosylase 2431729..2432373 Bordetella parapertussis 12822 1666044 NP_884531.1 CDS accA NC_002928.3 2432410 2433375 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 2432410..2433375 Bordetella parapertussis 12822 1666045 NP_884532.1 CDS BPP2286 NC_002928.3 2433436 2434470 D ortholog of Bordetella pertussis (BX470248) BP1912; hypothetical protein 2433436..2434470 Bordetella parapertussis 12822 1666340 NP_884533.1 CDS ask NC_002928.3 2434543 2435835 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 2434543..2435835 Bordetella parapertussis 12822 1666341 NP_884534.1 CDS BPP2288 NC_002928.3 2436378 2436878 D ortholog of Bordetella pertussis (BX470248) BP1915; hypothetical protein 2436378..2436878 Bordetella parapertussis 12822 1666342 NP_884535.1 CDS BPP2289 NC_002928.3 2436920 2437234 D ortholog of Bordetella pertussis (BX470248) BP1916; hypothetical protein 2436920..2437234 Bordetella parapertussis 12822 1666343 NP_884536.1 CDS BPP2290 NC_002928.3 2437244 2438185 D Converts (S)-3-hydroxyactk-CoA to 3-oxoayl-CoA; 3-hydroxyacyl-CoA dehydrogenase 2437244..2438185 Bordetella parapertussis 12822 1666344 NP_884537.1 CDS BPP2291 NC_002928.3 2438182 2438706 D ortholog of Bordetella pertussis (BX470248) BP1918; hypothetical protein 2438182..2438706 Bordetella parapertussis 12822 1666345 NP_884538.1 CDS BPP2292 NC_002928.3 2438709 2439977 D ortholog of Bordetella pertussis (BX470248) BP1919; hypothetical protein 2438709..2439977 Bordetella parapertussis 12822 1666346 NP_884539.1 CDS BPP2293 NC_002928.3 2440006 2440989 D ortholog of Bordetella pertussis (BX470248) BP1920; hypothetical protein 2440006..2440989 Bordetella parapertussis 12822 1664740 NP_884540.1 CDS bioH NC_002928.3 2440986 2441795 D ortholog of Bordetella pertussis (BX470248) BP1921; hydrolase 2440986..2441795 Bordetella parapertussis 12822 1664741 NP_884541.1 CDS BPP2295 NC_002928.3 2441792 2442595 D catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis; L-aspartate dehydrogenase 2441792..2442595 Bordetella parapertussis 12822 1664742 NP_884542.1 CDS BPP2296 NC_002928.3 2442610 2443377 D ortholog of Bordetella pertussis (BX470248) BP1923; short chain dehydrogenase 2442610..2443377 Bordetella parapertussis 12822 1664743 NP_884543.1 CDS BPP2297 NC_002928.3 2443465 2444103 D ortholog of Bordetella pertussis (BX470248) BP1924; TetR family transcriptional regulator 2443465..2444103 Bordetella parapertussis 12822 1664744 NP_884544.1 CDS BPP2298 NC_002928.3 2444108 2445061 R ortholog of Bordetella pertussis (BX470248) BP1925; LysR family transcriptional regulator complement(2444108..2445061) Bordetella parapertussis 12822 1664745 NP_884545.1 CDS BPP2299 NC_002928.3 2445173 2446297 D ortholog of Bordetella pertussis (BX470248) BP1926; extracellular solute-binding protein 2445173..2446297 Bordetella parapertussis 12822 1664746 NP_884546.1 CDS BPP2302 NC_002928.3 2447950 2448777 D ortholog of Bordetella pertussis (BX470248) BP1928; ABC transporter, permease 2447950..2448777 Bordetella parapertussis 12822 1664947 NP_884547.1 CDS BPP2303 NC_002928.3 2448774 2449577 D ortholog of Bordetella pertussis (BX470248) BP1929; ABC transporter, permease 2448774..2449577 Bordetella parapertussis 12822 1664948 NP_884548.1 CDS BPP2304 NC_002928.3 2449574 2450665 D ortholog of Bordetella pertussis (BX470248) BP1930; ABC transporter ATP-binding protein 2449574..2450665 Bordetella parapertussis 12822 1664949 NP_884549.1 CDS BPP2305 NC_002928.3 2451042 2452070 R ortholog of Bordetella pertussis (BX470248) BP1931; NADH-dependent flavin oxidoreductase complement(2451042..2452070) Bordetella parapertussis 12822 1664950 NP_884550.1 CDS BPP2306 NC_002928.3 2452067 2452933 R ortholog of Bordetella pertussis (BX470248) BP1932; transcriptional regulator complement(2452067..2452933) Bordetella parapertussis 12822 1664951 NP_884551.1 CDS BPP2307 NC_002928.3 2452942 2455062 R ortholog of Bordetella pertussis (BX470248) BP1933; pimeloyl-CoA synthetase complement(2452942..2455062) Bordetella parapertussis 12822 1665123 NP_884552.1 CDS BPP2308 NC_002928.3 2455063 2456088 R ortholog of Bordetella pertussis (BX470248) BP1934; hypothetical protein complement(2455063..2456088) Bordetella parapertussis 12822 1665124 NP_884553.1 CDS BPP2309 NC_002928.3 2456088 2456480 R ortholog of Bordetella pertussis (BX470248) BP1935; hypothetical protein complement(2456088..2456480) Bordetella parapertussis 12822 1665125 NP_884554.1 CDS BPP2310 NC_002928.3 2456484 2456972 R ortholog of Bordetella pertussis (BX470248) BP1936; hypothetical protein complement(2456484..2456972) Bordetella parapertussis 12822 1665126 NP_884555.1 CDS BPP2311 NC_002928.3 2456986 2457321 R ortholog of Bordetella pertussis (BX470248) BP1937; hypothetical protein complement(2456986..2457321) Bordetella parapertussis 12822 1665127 NP_884556.1 CDS BPP2312 NC_002928.3 2457328 2457777 R ortholog of Bordetella pertussis (BX470248) BP1938; hypothetical protein complement(2457328..2457777) Bordetella parapertussis 12822 1665128 NP_884557.1 CDS BPP2313 NC_002928.3 2457985 2458284 D ortholog of Bordetella pertussis (BX470248) BP1939; ArsR family transcriptional regulator 2457985..2458284 Bordetella parapertussis 12822 1665947 NP_884558.1 CDS nemA NC_002928.3 2458326 2459438 D ortholog of Bordetella pertussis (BX470248) BP1940; N-ethylmaleimide reductase 2458326..2459438 Bordetella parapertussis 12822 1665948 NP_884559.1 CDS BPP2315 NC_002928.3 2459443 2460093 R ortholog of Bordetella pertussis (BX470248) BP1941; hypothetical protein complement(2459443..2460093) Bordetella parapertussis 12822 1665949 NP_884560.1 CDS hmsR NC_002928.3 2460074 2461333 R predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase complement(2460074..2461333) Bordetella parapertussis 12822 1665950 NP_884561.1 CDS hmsF NC_002928.3 2461337 2463442 R ortholog of Bordetella pertussis (BX470248) BP1943; hemin storage protein complement(2461337..2463442) Bordetella parapertussis 12822 1665951 NP_884562.1 CDS hmsH NC_002928.3 2463448 2465433 R ortholog of Bordetella pertussis (BX470248) BP1944; hemin storage protein complement(2463448..2465433) Bordetella parapertussis 12822 1665952 NP_884563.1 CDS BPP2319 NC_002928.3 2465642 2465878 D ortholog of Bordetella pertussis (BX470248) BP1945; hypothetical protein 2465642..2465878 Bordetella parapertussis 12822 1665953 NP_884564.1 CDS BPP2320 NC_002928.3 2466225 2466710 D ortholog of Bordetella pertussis (BX470248) BP1946; MarR family transcriptional regulator 2466225..2466710 Bordetella parapertussis 12822 1665954 NP_884565.1 CDS BPP2321 NC_002928.3 2467025 2468233 D ortholog of Bordetella pertussis (BX470248) BP1948; branched-chain amino acid-binding protein 2467025..2468233 Bordetella parapertussis 12822 1665955 NP_884566.1 CDS BPP2322 NC_002928.3 2468391 2470274 D ortholog of Bordetella pertussis (BX470248) BP1949; permease of branched-chain amino acid transport system 2468391..2470274 Bordetella parapertussis 12822 1665956 NP_884567.1 CDS BPP2323 NC_002928.3 2470271 2471047 D ortholog of Bordetella pertussis (BX470248) BP1950; branched-chain amino acid ABC transporter ATP-binding protein 2470271..2471047 Bordetella parapertussis 12822 1665750 NP_884568.1 CDS BPP2324 NC_002928.3 2471044 2471814 D ortholog of Bordetella pertussis (BX470248) BP1951; ABC transporter ATP-binding protein 2471044..2471814 Bordetella parapertussis 12822 1665751 NP_884569.1 CDS BPP2326 NC_002928.3 2474804 2475325 R ortholog of Bordetella pertussis (BX470248) BP1953; oxidoreductase complement(2474804..2475325) Bordetella parapertussis 12822 1665753 NP_884570.1 CDS BPP2327 NC_002928.3 2475402 2476553 R ortholog of Bordetella pertussis (BX470248) BP1954; monooxygenase complement(2475402..2476553) Bordetella parapertussis 12822 1665382 NP_884571.1 CDS BPP2329 NC_002928.3 2477626 2478447 D ortholog of Bordetella pertussis (BX470248) BP1956; alpha/beta hydrolase 2477626..2478447 Bordetella parapertussis 12822 1665384 NP_884572.1 CDS BPP2330 NC_002928.3 2478475 2479506 D ortholog of Bordetella pertussis (BX470248) BP1957; hypothetical protein 2478475..2479506 Bordetella parapertussis 12822 1665385 NP_884573.1 CDS BPP2331 NC_002928.3 2479522 2480139 D ortholog of Bordetella pertussis (BX470248) BP1958; isochorismatase 2479522..2480139 Bordetella parapertussis 12822 1665386 NP_884574.1 CDS BPP2332 NC_002928.3 2480136 2482547 D ortholog of Bordetella pertussis (BX470248) BP1960; aldehyde dehydrogenase 2480136..2482547 Bordetella parapertussis 12822 1665387 NP_884575.1 CDS BPP2333 NC_002928.3 2482565 2484004 D ortholog of Bordetella pertussis (BX470248) BP1961; flavocytochrome 2482565..2484004 Bordetella parapertussis 12822 1665388 NP_884576.1 CDS bfrI NC_002928.3 2484015 2486123 R ortholog of Bordetella pertussis (BX470248) BP1962; ferrisiderophore receptor complement(2484015..2486123) Bordetella parapertussis 12822 1667862 NP_884577.1 CDS BPP2335 NC_002928.3 2486250 2486777 R ortholog of Bordetella pertussis (BX470248) BP1963; transcriptional regulator complement(2486250..2486777) Bordetella parapertussis 12822 1667863 NP_884578.1 CDS BPP2336 NC_002928.3 2486871 2487836 D ortholog of Bordetella pertussis (BX470248) BP1965; hypothetical protein 2486871..2487836 Bordetella parapertussis 12822 1667864 NP_884579.1 CDS BPP2337 NC_002928.3 2487853 2489418 D ortholog of Bordetella pertussis (BX470248) BP1966; sulfatase 2487853..2489418 Bordetella parapertussis 12822 1667865 NP_884580.1 CDS fadD NC_002928.3 2489440 2491113 R Similar to Escherichia coli long-chain-fatty-acid--CoA ligase FadD or OldD or B1805 SWALL:LCFA_ECOLI (SWALL:P29212) (561 aa) fasta scores: E(): 6.9e-126, 58.84% id in 554 aa, and to Brucella melitensis long-chain-fatty-acid-CoA ligase BMEI1632 SWALL:Q8YF90 (EMBL:AE009599) (639 aa) fasta scores: E(): 8.9e-126, 58.09% id in 556 aa. Note: Also similar to BPP3729 (564 aa) fasta scores: E(): 4.8e-114, 55.835% identity in 557 aa overlap; long-chain-fatty-acid--CoA ligase complement(2489440..2491113) Bordetella parapertussis 12822 1667866 NP_884581.1 CDS BPP2339 NC_002928.3 2491122 2491670 R Similar to Pseudomonas aeruginosa hypothetical protein PA5222 SWALL:Q9HTW8 (EMBL:AE004935) (160 aa) fasta scores: E(): 2.4e-15, 37.58% id in 149 aa; hypothetical protein complement(2491122..2491670) Bordetella parapertussis 12822 1665333 NP_884582.1 CDS BPP2340 NC_002928.3 2491667 2492866 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(2491667..2492866) Bordetella parapertussis 12822 1665334 NP_884583.1 CDS BPP2341 NC_002928.3 2492876 2495266 R Similar to Ralstonia solanacearum 3-hydroxyacyl-CoA dehydrogenase oxidoreductase RSC0474 or RS04421 SWALL:Q8Y262 (EMBL:AL646059) (827 aa) fasta scores: E(): 6.7e-108, 53.07% id in 814 aa, and to Escherichia coli probable 3-hydroxybutyryl-CoA dehydrogenase PaaH or B1395 SWALL:PAAH_ECOLI (SWALL:P76083) (475 aa) fasta scores: E(): 2.9e-17, 30.51% id in 462 aa; 3-hydroxyacyl-CoA dehydrogenase oxidoreductase complement(2492876..2495266) Bordetella parapertussis 12822 1665335 NP_884584.1 CDS BPP2343 NC_002928.3 2496709 2498652 R Similar to Deinococcus radiodurans enoyl-CoA hydratase/3,2-trans-enoyl-CoA isomerase/3-hydroxyacyl-CoA dehydrogenase DRr1487 SWALL:Q9RUA4 (EMBL:AE001993) (708 aa) fasta scores: E(): 5.7e-44, 32.98% id in 670 aa, and to Pseudomonas fragi fatty oxidation complex alpha subunit [includes: enoyl-CoA hydratase FaoA SWALL:FAOB_PSEFR (SWALL:P28793) (715 aa) fasta scores: E(): 6.5e-28, 34.13% id in 668 aa; enoyl-CoA hydratasee complement(2496709..2498652) Bordetella parapertussis 12822 1665337 NP_884585.1 CDS BPP2344 NC_002928.3 2498649 2499941 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(2498649..2499941) Bordetella parapertussis 12822 1665338 NP_884586.1 CDS fadE NC_002928.3 2499954 2502287 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2499954..2502287) Bordetella parapertussis 12822 1665339 NP_884587.1 CDS BPP2347 NC_002928.3 2504135 2504899 D Similar to Ralstonia solanacearum probable transcription regulator protein RSC1185 or RS05717 SWALL:Q8Y059 (EMBL:AL646063) (222 aa) fasta scores: E(): 4.1e-18, 41.22% id in 228 aa, and to Bacillus subtilis YfiK SWALL:P94439 (EMBL:D78508) (220 aa) fasta scores: E(): 6.9e-05, 24.34% id in 230 aa; LuxR family regulatory protein 2504135..2504899 Bordetella parapertussis 12822 1665327 NP_884588.1 CDS BPP2348 NC_002928.3 2505203 2505865 D ortholog of Bordetella pertussis (BX470248) BP1969; LuxR family transcriptional regulator 2505203..2505865 Bordetella parapertussis 12822 1665328 NP_884589.1 CDS pgm NC_002928.3 2505967 2507394 D ortholog of Bordetella pertussis (BX470248) BP1970; phosphoglucomutase 2505967..2507394 Bordetella parapertussis 12822 1665329 NP_884590.1 CDS pgi NC_002928.3 2507404 2508975 D ortholog of Bordetella pertussis (BX470248) BP1971; glucose-6-phosphate isomerase 2507404..2508975 Bordetella parapertussis 12822 1665330 NP_884591.1 CDS srpH NC_002928.3 2509158 2510111 D ortholog of Bordetella pertussis (BX470248) BP1972; serine acetyltransferase 2509158..2510111 Bordetella parapertussis 12822 1665331 NP_884592.1 CDS BPP2353 NC_002928.3 2510626 2511576 R transposase for IS1002 element; IS1002 transposase complement(2510626..2511576) Bordetella parapertussis 12822 1668334 NP_884593.1 CDS BPP2355 NC_002928.3 2513400 2514266 R ortholog of Bordetella pertussis (BX470248) BP1975; inositol monophosphatase complement(2513400..2514266) Bordetella parapertussis 12822 1668336 NP_884594.1 CDS gabD NC_002928.3 2514428 2515897 R ortholog of Bordetella pertussis (BX470248) BP1976; succinate-semialdehyde dehydrogenase complement(2514428..2515897) Bordetella parapertussis 12822 1668337 NP_884595.1 CDS goaG NC_002928.3 2515977 2517278 R ortholog of Bordetella pertussis (BX470248) BP1977; 4-aminobutyrate aminotransferase complement(2515977..2517278) Bordetella parapertussis 12822 1668338 NP_884596.1 CDS BPP2358 NC_002928.3 2517379 2518872 D ortholog of Bordetella pertussis (BX470248) BP1978; GntR family transcriptional regulator 2517379..2518872 Bordetella parapertussis 12822 1668339 NP_884597.1 CDS BPP2359 NC_002928.3 2518873 2519853 R ortholog of Bordetella pertussis (BX470248) BP1979; hypothetical protein complement(2518873..2519853) Bordetella parapertussis 12822 1665230 NP_884598.1 CDS BPP2361 NC_002928.3 2522017 2523021 D ortholog of Bordetella pertussis (BX470248) BP1981; magnesium transporter 2522017..2523021 Bordetella parapertussis 12822 1665232 NP_884599.1 CDS BPP2362 NC_002928.3 2523084 2523722 D ortholog of Bordetella pertussis (BX470248) BP1982; nuclease 2523084..2523722 Bordetella parapertussis 12822 1665233 NP_884600.1 CDS BPP2363 NC_002928.3 2523819 2526068 D ortholog of Bordetella pertussis (BX470248) BP1983; extracellular solute-binding protein 2523819..2526068 Bordetella parapertussis 12822 1666561 NP_884601.1 CDS BPP2364 NC_002928.3 2526065 2527042 D ortholog of Bordetella pertussis (BX470248) BP1984; oligopeptide transport system permease 2526065..2527042 Bordetella parapertussis 12822 1666562 NP_884602.1 CDS BPP2365 NC_002928.3 2527048 2528505 D ortholog of Bordetella pertussis (BX470248) BP1985; oligopeptide transport integral membrane protein 2527048..2528505 Bordetella parapertussis 12822 1666563 NP_884603.1 CDS BPP2366 NC_002928.3 2528502 2530178 D ortholog of Bordetella pertussis (BX470248) BP1986; ABC transporter ATP-binding protein 2528502..2530178 Bordetella parapertussis 12822 1666564 NP_884604.1 CDS BPP2368 NC_002928.3 2530813 2532498 R ortholog of Bordetella pertussis (BX470248) BP1988; hypothetical protein complement(2530813..2532498) Bordetella parapertussis 12822 1665036 NP_884605.1 CDS BPP2369 NC_002928.3 2532803 2534515 R ortholog of Bordetella pertussis (BX470248) BP1989; hypothetical protein complement(2532803..2534515) Bordetella parapertussis 12822 1665037 NP_884606.1 CDS BPP2370 NC_002928.3 2534972 2535790 D ortholog of Bordetella pertussis (BX470248) BP1990; hypothetical protein 2534972..2535790 Bordetella parapertussis 12822 1665038 NP_884607.1 CDS BPP2371 NC_002928.3 2535888 2536064 D ortholog of Bordetella pertussis (BX470248) BP1991; hypothetical protein 2535888..2536064 Bordetella parapertussis 12822 1665039 NP_884608.1 CDS BPP2372 NC_002928.3 2536134 2536664 D ortholog of Bordetella pertussis (BX470248) BP1992; hypothetical protein 2536134..2536664 Bordetella parapertussis 12822 1665040 NP_884609.1 CDS BPP2373 NC_002928.3 2536625 2537068 D ortholog of Bordetella pertussis (BX470248) BP1993; hypothetical protein 2536625..2537068 Bordetella parapertussis 12822 1665041 NP_884610.1 CDS BPP2374 NC_002928.3 2537070 2537546 D ortholog of Bordetella pertussis (BX470248) BP1994; hypothetical protein 2537070..2537546 Bordetella parapertussis 12822 1665042 NP_884611.1 CDS BPP2375 NC_002928.3 2537543 2538484 D ortholog of Bordetella pertussis (BX470248) BP1995; hypothetical protein 2537543..2538484 Bordetella parapertussis 12822 1666607 NP_884612.1 CDS BPP2376 NC_002928.3 2538540 2539886 D ortholog of Bordetella pertussis (BX470248) BP1996; type II secretion system protein 2538540..2539886 Bordetella parapertussis 12822 1666608 NP_884613.1 CDS BPP2377 NC_002928.3 2539883 2541232 D ortholog of Bordetella pertussis (BX470248) BP1997; hypothetical protein 2539883..2541232 Bordetella parapertussis 12822 1666609 NP_884614.1 CDS BPP2378 NC_002928.3 2541241 2542596 D ortholog of Bordetella pertussis (BX470248) BP1998; type II secretion system protein 2541241..2542596 Bordetella parapertussis 12822 1666610 NP_884615.1 CDS BPP2379 NC_002928.3 2542593 2543513 D ortholog of Bordetella pertussis (BX470248) BP1999; hypothetical protein 2542593..2543513 Bordetella parapertussis 12822 1666611 NP_884616.1 CDS BPP2380 NC_002928.3 2543522 2544508 D ortholog of Bordetella pertussis (BX470248) BP2000; hypothetical protein 2543522..2544508 Bordetella parapertussis 12822 1666612 NP_884617.1 CDS BPP2381 NC_002928.3 2544508 2545353 D ortholog of Bordetella pertussis (BX470248) BP2001; lipoprotein 2544508..2545353 Bordetella parapertussis 12822 1666613 NP_884618.1 CDS BPP2382 NC_002928.3 2545372 2545785 D ortholog of Bordetella pertussis (BX470248) BP2002; hypothetical protein 2545372..2545785 Bordetella parapertussis 12822 1666614 NP_884619.1 CDS BPP2383 NC_002928.3 2545793 2548042 D ortholog of Bordetella pertussis (BX470248) BP2003; hypothetical protein 2545793..2548042 Bordetella parapertussis 12822 1666615 NP_884620.1 CDS BPP2384 NC_002928.3 2548064 2549455 D ortholog of Bordetella pertussis (BX470248) BP2004; response regulator 2548064..2549455 Bordetella parapertussis 12822 1668031 NP_884621.1 CDS BPP2385 NC_002928.3 2549535 2550230 D ortholog of Bordetella pertussis (BX470248) BP2005; lipoprotein 2549535..2550230 Bordetella parapertussis 12822 1668032 NP_884622.1 CDS BPP2386 NC_002928.3 2550303 2550785 D ortholog of Bordetella pertussis (BX470248) BP2006; hypothetical protein 2550303..2550785 Bordetella parapertussis 12822 1668033 NP_884623.1 CDS BPP2387 NC_002928.3 2550843 2551547 D member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2550843..2551547 Bordetella parapertussis 12822 1668034 NP_884624.1 CDS BPP2388 NC_002928.3 2551694 2552263 D ortholog of Bordetella pertussis (BX470248) BP2008; hypothetical protein 2551694..2552263 Bordetella parapertussis 12822 1668035 NP_884625.1 CDS BPP2389 NC_002928.3 2552260 2552670 D ortholog of Bordetella pertussis (BX470248) BP2009; cytochrome c 2552260..2552670 Bordetella parapertussis 12822 1668036 NP_884626.1 CDS efp NC_002928.3 2552837 2553394 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(2552837..2553394) Bordetella parapertussis 12822 1668016 NP_884627.1 CDS BPP2391 NC_002928.3 2553537 2554649 R ortholog of Bordetella pertussis (BX470248) BP2011; hypothetical protein complement(2553537..2554649) Bordetella parapertussis 12822 1668017 NP_884628.1 CDS BPP2392 NC_002928.3 2554665 2555867 R ortholog of Bordetella pertussis (BX470248) BP2012; hypothetical protein complement(2554665..2555867) Bordetella parapertussis 12822 1668018 NP_884629.1 CDS BPP2393 NC_002928.3 2555974 2556813 D ortholog of Bordetella pertussis (BX470248) BP2013; hypothetical protein 2555974..2556813 Bordetella parapertussis 12822 1668019 NP_884630.1 CDS acnA NC_002928.3 2556922 2559627 R catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(2556922..2559627) Bordetella parapertussis 12822 1668020 NP_884631.1 CDS BPP2395 NC_002928.3 2559865 2560467 R ortholog of Bordetella pertussis (BX470248) BP2015; lipoprotein complement(2559865..2560467) Bordetella parapertussis 12822 1668021 NP_884632.1 CDS brfB NC_002928.3 2560744 2562948 D ortholog of Bordetella pertussis (BX470248) BP2016; ferric siderophore receptor 2560744..2562948 Bordetella parapertussis 12822 1668022 NP_884633.1 CDS BPP2397 NC_002928.3 2563110 2563733 D ortholog of Bordetella pertussis (BX470248) BP2017; haloacid-type dehydrogenase 2563110..2563733 Bordetella parapertussis 12822 1668023 NP_884634.1 CDS BPP2398 NC_002928.3 2563853 2564455 R ortholog of Bordetella pertussis (BX470248) BP2019; lipoprotein complement(2563853..2564455) Bordetella parapertussis 12822 1668024 NP_884635.1 CDS BPP2399 NC_002928.3 2564457 2564795 R ortholog of Bordetella pertussis (BX470248) BP2020; hypothetical protein complement(2564457..2564795) Bordetella parapertussis 12822 1667032 NP_884636.1 CDS acnB NC_002928.3 2565190 2567781 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(2565190..2567781) Bordetella parapertussis 12822 1667033 NP_884637.1 CDS BPP2401 NC_002928.3 2567848 2568591 D ortholog of Bordetella pertussis (BX470248) BP2022; exonuclease 2567848..2568591 Bordetella parapertussis 12822 1667034 NP_884638.1 CDS BPP2402 NC_002928.3 2568604 2568990 D ortholog of Bordetella pertussis (BX470248) BP2023; hypothetical protein 2568604..2568990 Bordetella parapertussis 12822 1667035 NP_884639.1 CDS BPP2403 NC_002928.3 2568997 2569287 R ortholog of Bordetella pertussis (BX470248) BP2024; hypothetical protein complement(2568997..2569287) Bordetella parapertussis 12822 1667036 NP_884640.1 CDS BPP2404 NC_002928.3 2569423 2569722 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 2569423..2569722 Bordetella parapertussis 12822 1667037 NP_884641.1 CDS BPP2405 NC_002928.3 2569791 2570693 D ortholog of Bordetella pertussis (BX470248) BP2026; integral membrane protein 2569791..2570693 Bordetella parapertussis 12822 1667038 NP_884642.1 CDS BPP2406 NC_002928.3 2570697 2571467 D ortholog of Bordetella pertussis (BX470248) BP2027; integral membrane protein 2570697..2571467 Bordetella parapertussis 12822 1667039 NP_884643.1 CDS BPP2407 NC_002928.3 2571853 2572302 D ortholog of Bordetella pertussis (BX470248) BP2028; hypothetical protein 2571853..2572302 Bordetella parapertussis 12822 1667040 NP_884644.1 CDS BPP2408 NC_002928.3 2572358 2572921 D hypothetical protein 2572358..2572921 Bordetella parapertussis 12822 1666774 NP_884645.1 CDS BPP2409 NC_002928.3 2572935 2575355 R ortholog of Bordetella pertussis (BX470248) BP2029A; Similar to Pseudomonas aeruginosa hypothetical protein PA1408 SWALL:Q9I3T6 (EMBL:AE004570) (807 aa) fasta scores: E(): 5.6e-86, 39.1% id in 803 aa, and to Rhizobium meliloti hypothetical transmembrane protein R00938 or SMC00028 SWALL:Q92RE2 (EMBL:AL591785) (871 aa) fasta scores: E(): 1.3e-49, 30.84% id in 804 aa; hypothetical protein complement(2572935..2575355) Bordetella parapertussis 12822 1666775 NP_884646.1 CDS BPP2410 NC_002928.3 2575500 2576411 R ortholog of Bordetella pertussis (BX470248) BP2030; LysR family transcriptional activator complement(2575500..2576411) Bordetella parapertussis 12822 1666776 NP_884647.1 CDS BPP2411 NC_002928.3 2576637 2578154 D ortholog of Bordetella pertussis (BX470248) BP2031; acyl-CoA transferase 2576637..2578154 Bordetella parapertussis 12822 1666777 NP_884648.1 CDS BPP2412 NC_002928.3 2578204 2579262 R ortholog of Bordetella pertussis (BX470248) BP2032; transmembrane transport protein complement(2578204..2579262) Bordetella parapertussis 12822 1666778 NP_884649.1 CDS BPP2413 NC_002928.3 2579384 2580346 R ortholog of Bordetella pertussis (BX470248) BP2034; LysR family transcriptional regulator complement(2579384..2580346) Bordetella parapertussis 12822 1664768 NP_884650.1 CDS vag8 NC_002928.3 2587395 2590142 D ortholog of Bordetella pertussis (BX470248) BP2315; autotransporter 2587395..2590142 Bordetella parapertussis 12822 1664769 NP_884651.1 CDS maf NC_002928.3 2590161 2590784 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(2590161..2590784) Bordetella parapertussis 12822 1664770 NP_884652.1 CDS BPP2417 NC_002928.3 2590796 2591266 R SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(2590796..2591266) Bordetella parapertussis 12822 1664771 NP_884653.1 CDS BPP2418 NC_002928.3 2591278 2591664 R ortholog of Bordetella pertussis (BX470248) BP2312; hypothetical protein complement(2591278..2591664) Bordetella parapertussis 12822 1664772 NP_884654.1 CDS nadD NC_002928.3 2591727 2592320 R ortholog of Bordetella pertussis (BX470248) BP2311; nicotinate-nucleotide adenylyltransferase complement(2591727..2592320) Bordetella parapertussis 12822 1668037 NP_884655.1 CDS hemF NC_002928.3 2592311 2593222 R catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase complement(2592311..2593222) Bordetella parapertussis 12822 1668038 NP_884656.1 CDS purD NC_002928.3 2593238 2594611 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(2593238..2594611) Bordetella parapertussis 12822 1668039 NP_884657.1 CDS BPP2422 NC_002928.3 2594646 2595377 R ortholog of Bordetella pertussis (BX470248) BP2308; hypothetical protein complement(2594646..2595377) Bordetella parapertussis 12822 1668040 NP_884658.1 CDS BPP2423 NC_002928.3 2595454 2597052 D ortholog of Bordetella pertussis (BX470248) BP2307; ATP-binding protein 2595454..2597052 Bordetella parapertussis 12822 1668041 NP_884659.1 CDS BPP2424 NC_002928.3 2597122 2598492 R ortholog of Bordetella pertussis (BX470248) BP2305; aminotransferase complement(2597122..2598492) Bordetella parapertussis 12822 1668042 NP_884660.1 CDS BPP2425 NC_002928.3 2598629 2599561 D ortholog of Bordetella pertussis (BX470248) BP2304; 2-hydroxyacid dehydrogenase 2598629..2599561 Bordetella parapertussis 12822 1668043 NP_884661.1 CDS BPP2426 NC_002928.3 2599572 2601065 R ortholog of Bordetella pertussis (BX470248) BP2303; aldehyde dehydrogenase complement(2599572..2601065) Bordetella parapertussis 12822 1668044 NP_884662.1 CDS BPP2427 NC_002928.3 2601062 2601985 R ortholog of Bordetella pertussis (BX470248) BP2302; hypothetical protein complement(2601062..2601985) Bordetella parapertussis 12822 1667155 NP_884663.1 CDS BPP2428 NC_002928.3 2601988 2603250 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(2601988..2603250) Bordetella parapertussis 12822 1667156 NP_884664.1 CDS BPP2429 NC_002928.3 2603270 2604334 R ortholog of Bordetella pertussis (BX470248) BP2300; acetylpolyamine aminohydrolase complement(2603270..2604334) Bordetella parapertussis 12822 1667157 NP_884665.1 CDS BPP2430 NC_002928.3 2604357 2604680 R ortholog of Bordetella pertussis (BX470248) BP2299; hypothetical protein complement(2604357..2604680) Bordetella parapertussis 12822 1667158 NP_884666.1 CDS BPP2431 NC_002928.3 2604677 2605951 R ortholog of Bordetella pertussis (BX470248) BP2298; aminobutyrate aminotransferase complement(2604677..2605951) Bordetella parapertussis 12822 1667159 NP_884667.1 CDS BPP2432 NC_002928.3 2605992 2607629 R ortholog of Bordetella pertussis (BX470248) BP2296; ABC transporter ATP-binding protein complement(2605992..2607629) Bordetella parapertussis 12822 1667160 NP_884668.1 CDS BPP2433 NC_002928.3 2607634 2608473 R ortholog of Bordetella pertussis (BX470248) BP2295; integral membrane transport protein complement(2607634..2608473) Bordetella parapertussis 12822 1667519 NP_884669.1 CDS BPP2435 NC_002928.3 2609592 2611166 R ortholog of Bordetella pertussis (BX470248) BP2293; solute-binding transport protein (periplasmic) complement(2609592..2611166) Bordetella parapertussis 12822 1667521 NP_884670.1 CDS BPP2436 NC_002928.3 2611586 2613130 D ortholog of Bordetella pertussis (BX470248) BP2292; transcriptional regulator 2611586..2613130 Bordetella parapertussis 12822 1667522 NP_884671.1 CDS BPP2437 NC_002928.3 2613235 2614302 D ortholog of Bordetella pertussis (BX470248) BP2291; tartrate dehydrogenase 2613235..2614302 Bordetella parapertussis 12822 1667561 NP_884672.1 CDS BPP2441 NC_002928.3 2617120 2618541 R ortholog of Bordetella pertussis (BX470248) BP2287; outer membrane protein complement(2617120..2618541) Bordetella parapertussis 12822 1667564 NP_884673.1 CDS BPP2442 NC_002928.3 2618665 2619153 R ortholog of Bordetella pertussis (BX470248) BP2286; MarR family transcriptional regulator complement(2618665..2619153) Bordetella parapertussis 12822 1667565 NP_884674.1 CDS BPP2443 NC_002928.3 2619212 2620069 R ortholog of Bordetella pertussis (BX470248) BP2285; hypothetical protein complement(2619212..2620069) Bordetella parapertussis 12822 1667566 NP_884675.1 CDS BPP2444 NC_002928.3 2620132 2621082 D ortholog of Bordetella pertussis (BX470248) BP2284; hypothetical protein 2620132..2621082 Bordetella parapertussis 12822 1667738 NP_884676.1 CDS qor NC_002928.3 2621145 2622134 D ortholog of Bordetella pertussis (BX470248) BP2283; quinone oxidoreductase 2621145..2622134 Bordetella parapertussis 12822 1667739 NP_884677.1 CDS BPP2446 NC_002928.3 2622210 2623091 R metalloprotease; heat shock protein HtpX complement(2622210..2623091) Bordetella parapertussis 12822 1667740 NP_884678.1 CDS BPP2447 NC_002928.3 2623245 2624099 D ortholog of Bordetella pertussis (BX470248) BP2281; integral membrane protein 2623245..2624099 Bordetella parapertussis 12822 1667741 NP_884679.1 CDS BPP2448 NC_002928.3 2624152 2625003 D ortholog of Bordetella pertussis (BX470248) BP2280; sulfurtransferase 2624152..2625003 Bordetella parapertussis 12822 1668171 NP_884680.1 CDS BPP2449 NC_002928.3 2625020 2625589 R ortholog of Bordetella pertussis (BX470248) BP2279; hypothetical protein complement(2625020..2625589) Bordetella parapertussis 12822 1668172 NP_884681.1 CDS BPP2450 NC_002928.3 2625620 2626450 R ortholog of Bordetella pertussis (BX470248) BP2278; transcriptional regulator complement(2625620..2626450) Bordetella parapertussis 12822 1668173 NP_884682.1 CDS BPP2451 NC_002928.3 2626643 2627719 D ortholog of Bordetella pertussis (BX470248) BP2277; ABC transporter ATP-binding protein 2626643..2627719 Bordetella parapertussis 12822 1668174 NP_884683.1 CDS BPP2452 NC_002928.3 2627706 2629475 D ortholog of Bordetella pertussis (BX470248) BP2276; ABC transporter permease 2627706..2629475 Bordetella parapertussis 12822 1668175 NP_884684.1 CDS BPP2453 NC_002928.3 2629492 2630322 D catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate; phosphonoacetaldehyde hydrolase 2629492..2630322 Bordetella parapertussis 12822 1668176 NP_884685.1 CDS BPP2454 NC_002928.3 2630351 2631373 D ortholog of Bordetella pertussis (BX470248) BP2274; periplasmic protein 2630351..2631373 Bordetella parapertussis 12822 1667165 NP_884686.1 CDS BPP2455 NC_002928.3 2631438 2632565 D ortholog of Bordetella pertussis (BX470248) BP2273; secreted oxidoreductase 2631438..2632565 Bordetella parapertussis 12822 1667166 NP_884687.1 CDS BPP2456 NC_002928.3 2632785 2633318 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(2632785..2633318) Bordetella parapertussis 12822 1667167 NP_884688.1 CDS BPP2457 NC_002928.3 2633527 2636469 D Similar to Serratia marcescens HasR protein SWALL:P72473 (EMBL:Y08983) (899 aa) fasta scores: E(): 8.8e-19, 25.71% id in 1019 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4897 SWALL:Q9HUR6 (EMBL:AE004902) (989 aa) fasta scores: E(): 9.4e-170, 58.24% id in 989 aa; extracellular heme-binding protein 2633527..2636469 Bordetella parapertussis 12822 1667168 NP_884689.1 CDS BPP2458 NC_002928.3 2636534 2637826 R ortholog of Bordetella pertussis (BX470248) BP2804; iron-sulfur protein complement(2636534..2637826) Bordetella parapertussis 12822 1667169 NP_884690.1 CDS BPP2459 NC_002928.3 2637833 2638852 R ortholog of Bordetella pertussis (BX470248) BP2803; integral membrane protein complement(2637833..2638852) Bordetella parapertussis 12822 1667170 NP_884691.1 CDS BPP2460 NC_002928.3 2639023 2639988 R ortholog of Bordetella pertussis (BX470248) BP2802; hypothetical protein complement(2639023..2639988) Bordetella parapertussis 12822 1664851 NP_884692.1 CDS BPP2461 NC_002928.3 2640001 2640993 D ortholog of Bordetella pertussis (BX470248) BP2801; transcriptional regulator 2640001..2640993 Bordetella parapertussis 12822 1664852 NP_884693.1 CDS xseB NC_002928.3 2641080 2641346 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 2641080..2641346 Bordetella parapertussis 12822 1664853 NP_884694.1 CDS BPP2463 NC_002928.3 2641351 2642262 D ortholog of Bordetella pertussis (BX470248) BP2799; geranyltranstransferase 2641351..2642262 Bordetella parapertussis 12822 1664854 NP_884695.1 CDS dxs NC_002928.3 2642312 2644174 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2642312..2644174 Bordetella parapertussis 12822 1664855 NP_884696.1 CDS BPP2465 NC_002928.3 2644331 2645128 D similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase 2644331..2645128 Bordetella parapertussis 12822 1664856 NP_884697.2 CDS rpsF NC_002928.3 2645348 2645728 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2645348..2645728 Bordetella parapertussis 12822 1664857 NP_884698.1 CDS priB NC_002928.3 2645776 2646099 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 2645776..2646099 Bordetella parapertussis 12822 1667541 NP_884699.1 CDS rpsR NC_002928.3 2646192 2646464 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 2646192..2646464 Bordetella parapertussis 12822 1667542 NP_884700.1 CDS rplI NC_002928.3 2646480 2646935 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 2646480..2646935 Bordetella parapertussis 12822 1667543 NP_884701.1 CDS BPP2470 NC_002928.3 2647067 2648287 D transposase for IS1001 element; transposase 2647067..2648287 Bordetella parapertussis 12822 1667544 NP_884702.1 CDS BPP2471 NC_002928.3 2648368 2649204 D ortholog of Bordetella pertussis (BX470248) BP2792; hypothetical protein 2648368..2649204 Bordetella parapertussis 12822 1667545 NP_884703.1 CDS dnaB NC_002928.3 2649201 2650574 D unwinds double stranded DNA; replicative DNA helicase 2649201..2650574 Bordetella parapertussis 12822 1667546 NP_884704.1 CDS BPP2473 NC_002928.3 2650595 2651563 R ortholog of Bordetella pertussis (BX470248) BP2790; hypothetical protein complement(2650595..2651563) Bordetella parapertussis 12822 1667547 NP_884705.1 CDS BPP2474 NC_002928.3 2651643 2652620 R ortholog of Bordetella pertussis (BX470248) BP2789; hypothetical protein complement(2651643..2652620) Bordetella parapertussis 12822 1667548 NP_884706.1 CDS BPP2475 NC_002928.3 2652725 2654371 R ortholog of Bordetella pertussis (BX470248) BP2788; hypothetical protein complement(2652725..2654371) Bordetella parapertussis 12822 1667549 NP_884707.1 CDS BPP2476 NC_002928.3 2654429 2654893 R ortholog of Bordetella pertussis (BX470248) BP2787; hypothetical protein complement(2654429..2654893) Bordetella parapertussis 12822 1667610 NP_884708.1 CDS BPP2477 NC_002928.3 2654896 2655348 R ortholog of Bordetella pertussis (BX470248) BP2786; hypothetical protein complement(2654896..2655348) Bordetella parapertussis 12822 1667611 NP_884709.1 CDS BPP2478 NC_002928.3 2655445 2656752 D ortholog of Bordetella pertussis (BX470248) BP2785; aminotransferase 2655445..2656752 Bordetella parapertussis 12822 1667612 NP_884710.1 CDS BPP2479 NC_002928.3 2656749 2658053 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 2656749..2658053 Bordetella parapertussis 12822 1667613 NP_884711.1 CDS thrC NC_002928.3 2658050 2659456 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2658050..2659456 Bordetella parapertussis 12822 1667614 NP_884712.1 CDS BPP2481 NC_002928.3 2659649 2659891 D ortholog of Bordetella pertussis (BX470248) BP2782; lipoprotein 2659649..2659891 Bordetella parapertussis 12822 1665638 NP_884713.1 CDS fbp NC_002928.3 2659964 2660983 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(2659964..2660983) Bordetella parapertussis 12822 1665639 NP_884714.1 CDS pepN NC_002928.3 2660993 2663701 R ortholog of Bordetella pertussis (BX470248) BP0869; aminopeptidase N complement(2660993..2663701) Bordetella parapertussis 12822 1665640 NP_884715.1 CDS BPP2484 NC_002928.3 2663780 2664487 D ortholog of Bordetella pertussis (BX470248) BP0870; hypothetical protein 2663780..2664487 Bordetella parapertussis 12822 1665641 NP_884716.1 CDS bph3 NC_002928.3 2664586 2664957 R ortholog of Bordetella pertussis (BX470248) BP2911; DNA-binding protein (histone) complement(2664586..2664957) Bordetella parapertussis 12822 1665642 NP_884717.1 CDS BPP2486 NC_002928.3 2665082 2665912 D ortholog of Bordetella pertussis (BX470248) BP2910; hydrolase 2665082..2665912 Bordetella parapertussis 12822 1665643 NP_884718.1 CDS BPP2487 NC_002928.3 2665923 2667383 D ortholog of Bordetella pertussis (BX470248) BP2909; hypothetical protein 2665923..2667383 Bordetella parapertussis 12822 1665644 NP_884719.1 CDS aroG NC_002928.3 2667640 2668713 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 2667640..2668713 Bordetella parapertussis 12822 1665645 NP_884720.1 CDS fhaL NC_002928.3 2668735 2681391 R ortholog of Bordetella pertussis (BX470248) BP2907; adhesin complement(2668735..2681391) Bordetella parapertussis 12822 1665646 NP_884721.1 CDS BPP2490 NC_002928.3 2681521 2682930 D ortholog of Bordetella pertussis (BX470248) BP2906; oxidoreductase 2681521..2682930 Bordetella parapertussis 12822 1664882 NP_884722.1 CDS glcD NC_002928.3 2683065 2684564 D ortholog of Bordetella pertussis (BX470248) BP2905; glycolate oxidase subunit 2683065..2684564 Bordetella parapertussis 12822 1664883 NP_884723.1 CDS glcE NC_002928.3 2684688 2685683 D ortholog of Bordetella pertussis (BX470248) BP2904; glycolate oxidase FAD binding subunit 2684688..2685683 Bordetella parapertussis 12822 1664884 NP_884724.1 CDS glcF NC_002928.3 2685716 2686945 D ortholog of Bordetella pertussis (BX470248) BP2903; glycolate oxidase iron-sulfur subunit 2685716..2686945 Bordetella parapertussis 12822 1664885 NP_884725.1 CDS BPP2494 NC_002928.3 2686936 2687847 R ortholog of Bordetella pertussis (BX470248) BP2902; hypothetical protein complement(2686936..2687847) Bordetella parapertussis 12822 1664886 NP_884726.1 CDS bfeA NC_002928.3 2687850 2690063 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA complement(2687850..2690063) Bordetella parapertussis 12822 1664887 NP_884727.1 CDS BPP2496 NC_002928.3 2690218 2691255 D ortholog of Bordetella pertussis (BX470248) BP2900; transcriptional regulator 2690218..2691255 Bordetella parapertussis 12822 1664888 NP_884728.1 CDS pntB NC_002928.3 2691299 2692735 R ortholog of Bordetella pertussis (BX470248) BP2899; NAD(P) transhydrogenase subunit beta complement(2691299..2692735) Bordetella parapertussis 12822 1667694 NP_884729.1 CDS pntAB NC_002928.3 2692732 2693049 R ortholog of Bordetella pertussis (BX470248) BP2898; NAD(P) transhydrogenase subunit alpha part 2 complement(2692732..2693049) Bordetella parapertussis 12822 1667695 NP_884730.1 CDS pntaA NC_002928.3 2693051 2694169 R ortholog of Bordetella pertussis (BX470248) BP2897; NAD(P) transhydrogenase subunit alpha part 1 complement(2693051..2694169) Bordetella parapertussis 12822 1667696 NP_884731.1 CDS BPP2500 NC_002928.3 2694424 2695299 R ortholog of Bordetella pertussis (BX470248) BP2896; hydrolase complement(2694424..2695299) Bordetella parapertussis 12822 1667697 NP_884732.1 CDS BPP2501 NC_002928.3 2695358 2696344 R ortholog of Bordetella pertussis (BX470248) BP2895; hypothetical protein complement(2695358..2696344) Bordetella parapertussis 12822 1667698 NP_884733.1 CDS BPP2502 NC_002928.3 2696516 2697436 D ortholog of Bordetella pertussis (BX470248) BP2894; LysR family transcriptional regulator 2696516..2697436 Bordetella parapertussis 12822 1667699 NP_884734.1 CDS mnmA NC_002928.3 2697449 2698564 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2697449..2698564 Bordetella parapertussis 12822 1667700 NP_884735.1 CDS BPP2504 NC_002928.3 2698665 2699483 D ortholog of Bordetella pertussis (BX470248) BP2892; integral membrane protein 2698665..2699483 Bordetella parapertussis 12822 1665937 NP_884736.1 CDS BPP2505 NC_002928.3 2699581 2700192 R ortholog of Bordetella pertussis (BX470248) BP2891; hypothetical protein complement(2699581..2700192) Bordetella parapertussis 12822 1665938 NP_884737.1 CDS purB NC_002928.3 2700280 2701728 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2700280..2701728 Bordetella parapertussis 12822 1665939 NP_884738.1 CDS BPP2507 NC_002928.3 2701791 2702249 D ortholog of Bordetella pertussis (BX470248) BP2889; c'cytochrome 2701791..2702249 Bordetella parapertussis 12822 1665940 NP_884739.1 CDS BPP2508 NC_002928.3 2702288 2703508 R transposase for IS1001 element; transposase complement(2702288..2703508) Bordetella parapertussis 12822 1665606 NP_884740.1 CDS BPP2509 NC_002928.3 2703649 2704344 R ortholog of Bordetella pertussis (BX470248) BP2888; integral membrane protein complement(2703649..2704344) Bordetella parapertussis 12822 1665607 NP_884741.1 CDS BPP2510 NC_002928.3 2704406 2704687 R ortholog of Bordetella pertussis (BX470248) BP2887; hypothetical protein complement(2704406..2704687) Bordetella parapertussis 12822 1665608 NP_884742.1 CDS BPP2511 NC_002928.3 2705257 2706009 D ortholog of Bordetella pertussis (BX470248) BP2886; lipoprotein 2705257..2706009 Bordetella parapertussis 12822 1665609 NP_884743.1 CDS BPP2512 NC_002928.3 2706054 2707130 D ortholog of Bordetella pertussis (BX470248) BP2885; hypothetical protein 2706054..2707130 Bordetella parapertussis 12822 1665610 NP_884744.1 CDS BPP2513 NC_002928.3 2707212 2707859 D ortholog of Bordetella pertussis (BX470248) BP3506; hypothetical protein 2707212..2707859 Bordetella parapertussis 12822 1665611 NP_884745.1 CDS BPP2514 NC_002928.3 2707874 2709301 R ortholog of Bordetella pertussis (BX470248) BP3507; hypothetical protein complement(2707874..2709301) Bordetella parapertussis 12822 1665612 NP_884746.1 CDS BPP2515 NC_002928.3 2709468 2710073 R ortholog of Bordetella pertussis (BX470248) BP3508; hypothetical protein complement(2709468..2710073) Bordetella parapertussis 12822 1665613 NP_884747.1 CDS BPP2516 NC_002928.3 2710109 2710432 D ortholog of Bordetella pertussis (BX470248) BP3509; hypothetical protein 2710109..2710432 Bordetella parapertussis 12822 1665614 NP_884748.1 CDS BPP2517 NC_002928.3 2710454 2710720 R ortholog of Bordetella pertussis (BX470248) BP3511; hypothetical protein complement(2710454..2710720) Bordetella parapertussis 12822 1666251 NP_884749.1 CDS BPP2518 NC_002928.3 2711050 2711286 D ortholog of Bordetella pertussis (BX470248) BP3512; hypothetical protein 2711050..2711286 Bordetella parapertussis 12822 1666252 NP_884750.1 CDS BPP2519 NC_002928.3 2711303 2711560 D ortholog of Bordetella pertussis (BX470248) BP3513; hypothetical protein 2711303..2711560 Bordetella parapertussis 12822 1666253 NP_884751.1 CDS BPP2522 NC_002928.3 2713179 2714153 R ortholog of Bordetella pertussis (BX470248) BP3515; hypothetical protein complement(2713179..2714153) Bordetella parapertussis 12822 1666255 NP_884752.1 CDS BPP2523 NC_002928.3 2714485 2715084 D ortholog of Bordetella pertussis (BX470248) BP3517; hypothetical protein 2714485..2715084 Bordetella parapertussis 12822 1666256 NP_884753.1 CDS BPP2524 NC_002928.3 2715072 2716502 D ortholog of Bordetella pertussis (BX470248) BP3518; phospholipase D family protein 2715072..2716502 Bordetella parapertussis 12822 1666257 NP_884754.1 CDS BPP2525 NC_002928.3 2716512 2718173 R ortholog of Bordetella pertussis (BX470248) BP3521; hypothetical protein complement(2716512..2718173) Bordetella parapertussis 12822 1666258 NP_884755.1 CDS BPP2526 NC_002928.3 2718248 2719555 R ortholog of Bordetella pertussis (BX470248) BP3522; hypothetical protein complement(2718248..2719555) Bordetella parapertussis 12822 1666259 NP_884756.1 CDS BPP2527 NC_002928.3 2719616 2720563 R ortholog of Bordetella pertussis (BX470248) BP3523; hypothetical protein complement(2719616..2720563) Bordetella parapertussis 12822 1666260 NP_884757.1 CDS BPP2528 NC_002928.3 2720688 2721131 D ortholog of Bordetella pertussis (BX470248) BP3524; acetyltransferase 2720688..2721131 Bordetella parapertussis 12822 1665226 NP_884758.1 CDS BPP2529 NC_002928.3 2721471 2722082 D ortholog of Bordetella pertussis (BX470248) BP3525; hypothetical protein 2721471..2722082 Bordetella parapertussis 12822 1665227 NP_884759.1 CDS rnr NC_002928.3 2722584 2725064 D ortholog of Bordetella pertussis (BX470248) BP3526; ribonuclease R 2722584..2725064 Bordetella parapertussis 12822 1665228 NP_884760.1 CDS BPP2531 NC_002928.3 2725175 2725912 D ortholog of Bordetella pertussis (BX470248) BP3527; tRNA/rRNA methyltransferase 2725175..2725912 Bordetella parapertussis 12822 1665229 NP_884761.1 CDS BPP2532 NC_002928.3 2725966 2727210 D ortholog of Bordetella pertussis (BX470248) BP3528; hypothetical protein 2725966..2727210 Bordetella parapertussis 12822 1667687 NP_884762.1 CDS BPP2533 NC_002928.3 2727251 2727931 D ortholog of Bordetella pertussis (BX470248) BP3529; hydroxylase 2727251..2727931 Bordetella parapertussis 12822 1667688 NP_884763.1 CDS hupB NC_002928.3 2728252 2728524 D ortholog of Bordetella pertussis (BX470248) BP3530; DNA-binding protein HU-beta 2728252..2728524 Bordetella parapertussis 12822 1667689 NP_884764.1 CDS tonB NC_002928.3 2729008 2729844 D ortholog of Bordetella pertussis (BX470248) BP3531; siderophore-mediated iron transport protein 2729008..2729844 Bordetella parapertussis 12822 1667690 NP_884765.1 CDS exbB NC_002928.3 2729846 2730823 D ortholog of Bordetella pertussis (BX470248) BP3532; MotA/TolQ/ExbB proton channel family protein 2729846..2730823 Bordetella parapertussis 12822 1667691 NP_884766.1 CDS exbD NC_002928.3 2730823 2731290 D ortholog of Bordetella pertussis (BX470248) BP3533; biopolymer transport protein ExbD/TolR 2730823..2731290 Bordetella parapertussis 12822 1667692 NP_884767.1 CDS basR NC_002928.3 2731373 2732044 D ortholog of Bordetella pertussis (BX470248) BP3534; response regulator protein 2731373..2732044 Bordetella parapertussis 12822 1667693 NP_884768.1 CDS BPP2539 NC_002928.3 2732103 2733221 D ortholog of Bordetella pertussis (BX470248) BP3535; sensor kinase 2732103..2733221 Bordetella parapertussis 12822 1668162 NP_884769.1 CDS kup NC_002928.3 2733218 2735128 D ortholog of Bordetella pertussis (BX470248) BP3536; potassium uptake protein 2733218..2735128 Bordetella parapertussis 12822 1668163 NP_884770.1 CDS argG NC_002928.3 2735214 2736551 R catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase complement(2735214..2736551) Bordetella parapertussis 12822 1668164 NP_884771.1 CDS argF NC_002928.3 2736702 2737643 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(2736702..2737643) Bordetella parapertussis 12822 1668165 NP_884772.2 CDS argD NC_002928.3 2737695 2738876 R catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase complement(2737695..2738876) Bordetella parapertussis 12822 1668166 NP_884773.1 CDS BPP2544 NC_002928.3 2739086 2739376 D ortholog of Bordetella pertussis (BX470248) BP3540; hypothetical protein 2739086..2739376 Bordetella parapertussis 12822 1668167 NP_884774.1 CDS BPP2545 NC_002928.3 2739381 2740289 R ortholog of Bordetella pertussis (BX470248) BP3541; LysR family regulatory protein complement(2739381..2740289) Bordetella parapertussis 12822 1665178 NP_884775.1 CDS BPP2546 NC_002928.3 2740353 2741126 R ortholog of Bordetella pertussis (BX470248) BP3542; short chain dehydrogenase complement(2740353..2741126) Bordetella parapertussis 12822 1665179 NP_884776.1 CDS BPP2547 NC_002928.3 2741273 2742226 R ortholog of Bordetella pertussis (BX470248) BP3543; D-isomer specific 2-hydroxyacid dehydrogenase complement(2741273..2742226) Bordetella parapertussis 12822 1665180 NP_884777.1 CDS BPP2548 NC_002928.3 2742329 2743300 R ortholog of Bordetella pertussis (BX470248) BP3544; lipoprotein complement(2742329..2743300) Bordetella parapertussis 12822 1665181 NP_884778.1 CDS BPP2549 NC_002928.3 2743382 2743573 R ortholog of Bordetella pertussis (BX470248) BP3545; hypothetical protein complement(2743382..2743573) Bordetella parapertussis 12822 1665182 NP_884779.1 CDS BPP2550 NC_002928.3 2743782 2744699 D ortholog of Bordetella pertussis (BX470248) BP3546; hypothetical protein 2743782..2744699 Bordetella parapertussis 12822 1665183 NP_884780.1 CDS BPP2551 NC_002928.3 2744762 2745532 D ortholog of Bordetella pertussis (BX470248) BP3547; GntR family transcriptional regulator 2744762..2745532 Bordetella parapertussis 12822 1665184 NP_884781.1 CDS BPP2552 NC_002928.3 2745589 2746701 D ortholog of Bordetella pertussis (BX470248) BP2780; malate dehydrogenase 2745589..2746701 Bordetella parapertussis 12822 1665185 NP_884782.1 CDS BPP2553 NC_002928.3 2746750 2748495 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2746750..2748495 Bordetella parapertussis 12822 1665186 NP_884783.1 CDS BPP2554 NC_002928.3 2748541 2749530 D ortholog of Bordetella pertussis (BX470248) BP2775; hypothetical protein 2748541..2749530 Bordetella parapertussis 12822 1666361 NP_884784.1 CDS BPP2555 NC_002928.3 2749581 2750357 D cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase 2749581..2750357 Bordetella parapertussis 12822 1666362 NP_884785.1 CDS rpsT NC_002928.3 2750475 2750738 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(2750475..2750738) Bordetella parapertussis 12822 1666363 NP_884786.1 CDS BPP2558 NC_002928.3 2752054 2753658 R ortholog of Bordetella pertussis (BX470248) BP2771; integral membrane protein complement(2752054..2753658) Bordetella parapertussis 12822 1666365 NP_884787.1 CDS BPP2559 NC_002928.3 2753684 2754442 R ortholog of Bordetella pertussis (BX470248) BP2770; short-chain dehydrogenase complement(2753684..2754442) Bordetella parapertussis 12822 1666230 NP_884788.1 CDS adk NC_002928.3 2754534 2755190 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(2754534..2755190) Bordetella parapertussis 12822 1666231 NP_884789.1 CDS BPP2561 NC_002928.3 2755281 2756045 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(2755281..2756045) Bordetella parapertussis 12822 1666232 NP_884790.1 CDS BPP2562 NC_002928.3 2756055 2756243 R ortholog of Bordetella pertussis (BX470248) BP2767; hypothetical protein complement(2756055..2756243) Bordetella parapertussis 12822 1666233 NP_884791.1 CDS lpxK NC_002928.3 2756299 2757342 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(2756299..2757342) Bordetella parapertussis 12822 1666234 NP_884792.1 CDS BPP2564 NC_002928.3 2757339 2757752 R ortholog of Bordetella pertussis (BX470248) BP2765; biopolymer transport protein complement(2757339..2757752) Bordetella parapertussis 12822 1666235 NP_884793.1 CDS BPP2565 NC_002928.3 2757749 2758369 R ortholog of Bordetella pertussis (BX470248) BP2764; biopolymer transport protein complement(2757749..2758369) Bordetella parapertussis 12822 1666236 NP_884794.1 CDS xseA NC_002928.3 2758719 2760110 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2758719..2760110 Bordetella parapertussis 12822 1666237 NP_884795.1 CDS sodB NC_002928.3 2760183 2760761 D ortholog of Bordetella pertussis (BX470248) BP2761; superoxide dismutase 2760183..2760761 Bordetella parapertussis 12822 1666238 NP_884796.1 CDS BPP2568 NC_002928.3 2760863 2762275 D ortholog of Bordetella pertussis (BX470248) BP2760; chloride-channel protein 2760863..2762275 Bordetella parapertussis 12822 1664669 NP_884797.1 CDS BPP2569 NC_002928.3 2762391 2763596 D catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 2762391..2763596 Bordetella parapertussis 12822 1664670 NP_884798.1 CDS BPP2570 NC_002928.3 2763696 2764214 R ortholog of Bordetella pertussis (BX470248) BP2758; exported protein complement(2763696..2764214) Bordetella parapertussis 12822 1664671 NP_884799.1 CDS BPP2571 NC_002928.3 2764312 2764557 R ortholog of Bordetella pertussis (BX470248) BP2757; cold-shock protein complement(2764312..2764557) Bordetella parapertussis 12822 1664672 NP_884800.1 CDS clpS NC_002928.3 2764785 2765099 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2764785..2765099 Bordetella parapertussis 12822 1664673 NP_884801.1 CDS BPP2573 NC_002928.3 2765189 2770378 D ortholog of Bordetella pertussis (BX470248) BP2755; hypothetical protein 2765189..2770378 Bordetella parapertussis 12822 1664674 NP_884802.1 CDS pbp NC_002928.3 2770375 2772543 D ortholog of Bordetella pertussis (BX470248) BP2754; penicillin-binding protein 2770375..2772543 Bordetella parapertussis 12822 1664675 NP_884803.1 CDS clpA NC_002928.3 2772563 2774911 D ortholog of Bordetella pertussis (BX470248) BP2753; ATP-dependent Clp protease ATP-binding 2772563..2774911 Bordetella parapertussis 12822 1667842 NP_884804.1 CDS BPP2576 NC_002928.3 2774916 2776235 D ortholog of Bordetella pertussis (BX470248) BP2752; hypothetical protein 2774916..2776235 Bordetella parapertussis 12822 1667843 NP_884805.1 CDS BPP2577 NC_002928.3 2776254 2777927 D ortholog of Bordetella pertussis (BX470248) BP2751; hypothetical protein 2776254..2777927 Bordetella parapertussis 12822 1667844 NP_884806.1 CDS BPP2578 NC_002928.3 2777932 2778600 D ortholog of Bordetella pertussis (BX470248) BP2750; lipoprotein 2777932..2778600 Bordetella parapertussis 12822 1667742 NP_884807.1 CDS putA NC_002928.3 2778757 2782578 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 2778757..2782578 Bordetella parapertussis 12822 1667743 NP_884808.1 CDS BPP2580 NC_002928.3 2782831 2783976 D ortholog of Bordetella pertussis (BX470248) BP2747; ABC transport solute-binding protein 2782831..2783976 Bordetella parapertussis 12822 1667744 NP_884809.1 CDS BPP2581 NC_002928.3 2784126 2785055 D ortholog of Bordetella pertussis (BX470248) BP2746; ABC transporter inner membrane protein 2784126..2785055 Bordetella parapertussis 12822 1667745 NP_884810.1 CDS BPP2582 NC_002928.3 2785052 2786140 D ortholog of Bordetella pertussis (BX470248) BP2745; ABC transport protein, ATP-binding component 2785052..2786140 Bordetella parapertussis 12822 1667746 NP_884811.1 CDS BPP2583 NC_002928.3 2786137 2786940 D ortholog of Bordetella pertussis (BX470248) BP2744; ABC transporter ATP-binding protein 2786137..2786940 Bordetella parapertussis 12822 1667747 NP_884812.1 CDS BPP2584 NC_002928.3 2786937 2787668 D ortholog of Bordetella pertussis (BX470248) BP2743; ABC transporter ATP-binding protein 2786937..2787668 Bordetella parapertussis 12822 1667748 NP_884813.1 CDS BPP2588 NC_002928.3 2789112 2789714 D ortholog of Bordetella pertussis (BX470248) BP2741; TetR family transcriptional regulator 2789112..2789714 Bordetella parapertussis 12822 1668027 NP_884814.1 CDS BPP2589 NC_002928.3 2789775 2790995 R transposase for IS1001 element; transposase complement(2789775..2790995) Bordetella parapertussis 12822 1668028 NP_884815.1 CDS bapC NC_002928.3 2791262 2794223 D ortholog of Bordetella pertussis (BX470248) BP2738; bapc seems to undergo phase variation at a poly C; autotransporter join(2791262..2791525,2791527..2794223) Bordetella parapertussis 12822 1667443 NP_884816.1 CDS amtB NC_002928.3 2794277 2795515 R ortholog of Bordetella pertussis (BX470248) BP2737; ammonium transporter complement(2794277..2795515) Bordetella parapertussis 12822 1667444 NP_884817.1 CDS BPP2593 NC_002928.3 2795541 2795879 R ortholog of Bordetella pertussis (BX470248) BP2736; nitrogen regulatory protein P-II complement(2795541..2795879) Bordetella parapertussis 12822 1667445 NP_884818.1 CDS BPP2594 NC_002928.3 2796549 2796854 D ortholog of Bordetella pertussis (BX470248) BP2735; hypothetical protein 2796549..2796854 Bordetella parapertussis 12822 1667446 NP_884819.1 CDS BPP2595 NC_002928.3 2796961 2798463 D ortholog of Bordetella pertussis (BX470248) BP2734; chelatase 2796961..2798463 Bordetella parapertussis 12822 1667447 NP_884820.1 CDS rpmI NC_002928.3 2798786 2798983 D ortholog of Bordetella pertussis (BX470248) BP2576; 50S ribosomal protein L35 2798786..2798983 Bordetella parapertussis 12822 1667448 NP_884821.1 CDS rplT NC_002928.3 2798999 2799358 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2798999..2799358 Bordetella parapertussis 12822 1667449 NP_884822.2 CDS pheS NC_002928.3 2799433 2800455 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2799433..2800455 Bordetella parapertussis 12822 1666354 NP_884823.1 CDS pheT NC_002928.3 2800468 2802885 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2800468..2802885 Bordetella parapertussis 12822 1666355 NP_884824.1 CDS ihfA NC_002928.3 2802891 2803232 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2802891..2803232 Bordetella parapertussis 12822 1666356 NP_884825.1 CDS BPP2601 NC_002928.3 2803291 2803701 D ortholog of Bordetella pertussis (BX470248) BP2571; MerR family transcriptional regulator 2803291..2803701 Bordetella parapertussis 12822 1666357 NP_884826.1 CDS BPP2602 NC_002928.3 2804165 2804758 D ortholog of Bordetella pertussis (BX470248) BP2569; lipoprotein 2804165..2804758 Bordetella parapertussis 12822 1666358 NP_884827.1 CDS BPP2603 NC_002928.3 2805298 2806011 R ortholog of Bordetella pertussis (BX470248) BP2583; hypothetical protein complement(2805298..2806011) Bordetella parapertussis 12822 1666359 NP_884828.1 CDS BPP2604 NC_002928.3 2806134 2806607 R ortholog of Bordetella pertussis (BX470248) BP2584; acetyltransferase complement(2806134..2806607) Bordetella parapertussis 12822 1666360 NP_884829.1 CDS BPP2605 NC_002928.3 2806610 2806987 R Similar to Escherichia coli O157:H7 hypothetical protein Yqjc or Z4451 or ECS3979 SWALL:Q8XAH3 (EMBL:AE005539) (127 aa) fasta scores: E(): 6.7e-10, 41.32% id in 121 aa, and to Yersinia pestis exported protein YPO0572 SWALL:Q8ZID3 (EMBL:AJ414143) (126 aa) fasta scores: E(): 7.3e-09, 43.29% id in 97 aa; hypothetical protein complement(2806610..2806987) Bordetella parapertussis 12822 1665394 NP_884830.1 CDS BPP2606 NC_002928.3 2807112 2808029 D Similar to Xanthomonas maltophilia L2 beta-lactamase BlaL2 SWALL:Q9F279 (EMBL:AF299368) (303 aa) fasta scores: E(): 2.2e-47, 49.49% id in 297 aa, and to Xanthomonas maltophilia beta-lactamase L2 precursor SWALL:BLA2_XANMA (SWALL:P96465) (303 aa) fasta scores: E(): 4.5e-45, 48% id in 300 aa; beta-lactamase 2807112..2808029 Bordetella parapertussis 12822 1665395 NP_884831.1 CDS BPP2607 NC_002928.3 2808044 2808397 R hypothetical protein complement(2808044..2808397) Bordetella parapertussis 12822 1665396 NP_884832.1 CDS BPP2608 NC_002928.3 2808415 2808774 R Similar to the N-terminal region of Rhizobium meliloti transcription regulator protein R03031 or SMC02504 SWALL:Q92LL1 (EMBL:AL591792) (150 aa) fasta scores: E(): 2.2e-07, 54.41% id in 68 aa, and to N- and C-treminal regions (there is no similarity with the central region) of Pseudomonas putida transcriptional regulator SWALL:Q93FY6 (EMBL:AF302763) (153 aa) fasta scores: E(): 3.5e-07, 39% id in 141 aa; regulatory protein complement(2808415..2808774) Bordetella parapertussis 12822 1665397 NP_884833.1 CDS BPP2609 NC_002928.3 2808785 2809387 R hypothetical protein complement(2808785..2809387) Bordetella parapertussis 12822 1665398 NP_884834.1 CDS BPP2610 NC_002928.3 2809491 2809772 D ortholog of Bordetella pertussis (BX470248) BP2581; hypothetical protein 2809491..2809772 Bordetella parapertussis 12822 1665399 NP_884835.1 CDS BPP2611 NC_002928.3 2809887 2811335 R ortholog of Bordetella pertussis (BX470248) BP2580; GntR family transcriptional regulator complement(2809887..2811335) Bordetella parapertussis 12822 1665400 NP_884836.1 CDS BPP2612 NC_002928.3 2812025 2812423 D ortholog of Bordetella pertussis (BX470248) BP2567; hypothetical protein 2812025..2812423 Bordetella parapertussis 12822 1665401 NP_884837.1 CDS BPP2613 NC_002928.3 2812565 2813305 R ortholog of Bordetella pertussis (BX470248) BP2566; exported endonulease complement(2812565..2813305) Bordetella parapertussis 12822 1665402 NP_884838.1 CDS ecnA2 NC_002928.3 2813481 2813612 D ortholog of Bordetella pertussis (BX470248) BP2565; entericidin A anti-toxin 2813481..2813612 Bordetella parapertussis 12822 1665403 NP_884839.1 CDS BPP2615 NC_002928.3 2813684 2814172 D ortholog of Bordetella pertussis (BX470248) BP2564; lipoprotein 2813684..2814172 Bordetella parapertussis 12822 1666103 NP_884840.1 CDS BPP2616 NC_002928.3 2814174 2814584 D ortholog of Bordetella pertussis (BX470248) BP2563; integral membrane protein 2814174..2814584 Bordetella parapertussis 12822 1666104 NP_884841.2 CDS pyrB NC_002928.3 2814690 2815985 D catalyzes the conversion of carbamoyl phosphate and aspartate to form N-carbamoyl aspartate; aspartate carbamoyltransferase 2814690..2815985 Bordetella parapertussis 12822 1666105 NP_884842.1 CDS rdgC NC_002928.3 2816025 2816924 R Required for efficient pilin antigenic variation; recombination associated protein complement(2816025..2816924) Bordetella parapertussis 12822 1666106 NP_884843.1 CDS BPP2619 NC_002928.3 2817078 2817296 D No significant database matches; ortholog of Bordetella pertussis (BX470248) BP2560; hypothetical protein 2817078..2817296 Bordetella parapertussis 12822 1666107 NP_884844.1 CDS BPP2620 NC_002928.3 2817559 2818866 R ortholog of Bordetella pertussis (BX470248) BP2559; hypothetical protein complement(2817559..2818866) Bordetella parapertussis 12822 1666108 NP_884845.1 CDS BPP2621 NC_002928.3 2818884 2819771 R ortholog of Bordetella pertussis (BX470248) BP2558; LysR family transcriptional regulator complement(2818884..2819771) Bordetella parapertussis 12822 1666109 NP_884846.1 CDS BPP2622 NC_002928.3 2819987 2821150 D ortholog of Bordetella pertussis (BX470248) BP2557; hypothetical protein 2819987..2821150 Bordetella parapertussis 12822 1666110 NP_884847.1 CDS BPP2623 NC_002928.3 2821158 2821550 D ortholog of Bordetella pertussis (BX470248) BP2556; hypothetical protein 2821158..2821550 Bordetella parapertussis 12822 1666111 NP_884848.1 CDS BPP2624 NC_002928.3 2821551 2821994 D ortholog of Bordetella pertussis (BX470248) BP2555; hypothetical protein 2821551..2821994 Bordetella parapertussis 12822 1666112 NP_884849.1 CDS fabG NC_002928.3 2821995 2822741 D ortholog of Bordetella pertussis (BX470248) BP2554; 3-oxoacyl-ACP reductase 2821995..2822741 Bordetella parapertussis 12822 1664902 NP_884850.1 CDS BPP2627 NC_002928.3 2824028 2825596 D ortholog of Bordetella pertussis (BX470248) BP2552; ABC transport protein, solute-binding protein 2824028..2825596 Bordetella parapertussis 12822 1664904 NP_884851.1 CDS BPP2628 NC_002928.3 2825593 2826657 D ortholog of Bordetella pertussis (BX470248) BP2551; ABC transporter ATP-binding protein 2825593..2826657 Bordetella parapertussis 12822 1664905 NP_884852.1 CDS BPP2629 NC_002928.3 2826667 2827461 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2826667..2827461 Bordetella parapertussis 12822 1665030 NP_884853.1 CDS BPP2630 NC_002928.3 2827630 2829306 R ortholog of Bordetella pertussis (BX470248) BP2549; sugar transport protein complement(2827630..2829306) Bordetella parapertussis 12822 1665031 NP_884854.1 CDS BPP2631 NC_002928.3 2829501 2830859 R ortholog of Bordetella pertussis (BX470248) BP2548; two-component system histidine kinase complement(2829501..2830859) Bordetella parapertussis 12822 1665032 NP_884855.1 CDS BPP2632 NC_002928.3 2830975 2831664 R ortholog of Bordetella pertussis (BX470248) BP2547; two-component response regulatory protein complement(2830975..2831664) Bordetella parapertussis 12822 1665033 NP_884856.1 CDS recA NC_002928.3 2831904 2832965 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2831904..2832965 Bordetella parapertussis 12822 1665034 NP_884857.1 CDS recX NC_002928.3 2832998 2833564 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2832998..2833564 Bordetella parapertussis 12822 1667053 NP_884858.1 CDS metR NC_002928.3 2833639 2834568 R ortholog of Bordetella pertussis (BX470248) BP2544; transcriptional regulatory protein complement(2833639..2834568) Bordetella parapertussis 12822 1667054 NP_884859.1 CDS metE NC_002928.3 2834709 2837024 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2834709..2837024 Bordetella parapertussis 12822 1667055 NP_884860.1 CDS BPP2637 NC_002928.3 2837229 2837843 D ortholog of Bordetella pertussis (BX470248) BP2542; hypothetical protein 2837229..2837843 Bordetella parapertussis 12822 1667056 NP_884861.1 CDS sucC NC_002928.3 2837840 2839000 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2837840..2839000 Bordetella parapertussis 12822 1667057 NP_884862.1 CDS sucD NC_002928.3 2839020 2839901 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 2839020..2839901 Bordetella parapertussis 12822 1667058 NP_884863.1 CDS BPP2640 NC_002928.3 2840177 2840872 D ortholog of Bordetella pertussis (BX470248) BP2539; integral membrane protein 2840177..2840872 Bordetella parapertussis 12822 1667059 NP_884864.1 CDS BPP2641 NC_002928.3 2840944 2841750 D ortholog of Bordetella pertussis (BX470248) BP2538; integral membrane protein 2840944..2841750 Bordetella parapertussis 12822 1667060 NP_884865.1 CDS hemC NC_002928.3 2841869 2842813 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 2841869..2842813 Bordetella parapertussis 12822 1664969 NP_884866.1 CDS BPP2643 NC_002928.3 2842810 2843634 D ortholog of Bordetella pertussis (BX470248) BP2536; uroporphyrinogen-III synthase 2842810..2843634 Bordetella parapertussis 12822 1664970 NP_884867.1 CDS BPP2644 NC_002928.3 2843621 2844856 D ortholog of Bordetella pertussis (BX470248) BP2535; hypothetical protein 2843621..2844856 Bordetella parapertussis 12822 1664971 NP_884868.1 CDS BPP2645 NC_002928.3 2844860 2846455 D ortholog of Bordetella pertussis (BX470248) BP2534; hypothetical protein 2844860..2846455 Bordetella parapertussis 12822 1664972 NP_884869.1 CDS ppa NC_002928.3 2846484 2847020 D ortholog of Bordetella pertussis (BX470248) BP2533; inorganic pyrophosphatase 2846484..2847020 Bordetella parapertussis 12822 1664973 NP_884870.1 CDS BPP2647 NC_002928.3 2847204 2847899 D ortholog of Bordetella pertussis (BX470248) BP2532; hypothetical protein 2847204..2847899 Bordetella parapertussis 12822 1664974 NP_884871.1 CDS ecnB NC_002928.3 2847926 2848057 D ortholog of Bordetella pertussis (BX470248) BP2531; entericidin B-like bacteriolytic toxin 2847926..2848057 Bordetella parapertussis 12822 1664975 NP_884872.1 CDS BPP2649 NC_002928.3 2848193 2849413 D transposase for IS1001 element; transposase 2848193..2849413 Bordetella parapertussis 12822 1666575 NP_884873.1 CDS zraR NC_002928.3 2850643 2852049 D Similar to Ralstonia solanacearum probable sigma-54 interacting response regulator transcription regulator protein RSP1667 or RSrs02226 SWALL:Q8XPH3 (EMBL:AL646086) (491 aa) fasta scores: E(): 2.7e-100, 58.83% id in 464 aa, and to Escherichia coli transcriptional regulatory protein ZraR or HydG or B4004 SWALL:ZRAR_ECOLI (SWALL:P14375) (441 aa) fasta scores: E(): 2.7e-58, 42.82% id in 439 aa. Also similar in its C-terminal region to upstream CDS BPP2650 (322 aa) fasta scores: E(): 5.1e-49, 51.803% identity in 305 aa overlap; transcriptional regulatory protein 2850643..2852049 Bordetella parapertussis 12822 1666577 NP_884874.1 CDS BPP2652 NC_002928.3 2852125 2853891 D catalyzes the formation of acetate from pyruvate; thiamine pyrophosphate protein 2852125..2853891 Bordetella parapertussis 12822 1666578 NP_884875.1 CDS BPP2653 NC_002928.3 2853940 2854173 D hypothetical protein 2853940..2854173 Bordetella parapertussis 12822 1665260 NP_884876.1 CDS BPP2654 NC_002928.3 2854279 2854623 D Similar to Ralstonia solanacearum probable transmembrane protein RSC0753 or RS05100 SWALL:Q8Y1D7 (EMBL:AL646060) (108 aa) fasta scores: E(): 2.5e-05, 31.11% id in 90 aa; hypothetical protein 2854279..2854623 Bordetella parapertussis 12822 1665261 NP_884877.1 CDS BPP2655 NC_002928.3 2854643 2854942 R Low similarity to Yersinia pestis lipoprotein YPO2202 SWALL:Q8ZEH1 (EMBL:AJ414151) (104 aa) fasta scores: E(): 0.0014, 27.77% id in 90 aa, and to Escherichia coli osmotically inducible protein Y precursor OsmY or B4376 SWALL:OSMY_ECOLI (SWALL:P27291) (201 aa) fasta scores: E(): 0.014, 31.88% id in 69 aa; hypothetical protein complement(2854643..2854942) Bordetella parapertussis 12822 1665262 NP_884878.1 CDS BPP2656 NC_002928.3 2855130 2855873 D Similar in its C-terminal region to Rhizobium meliloti SMC22-1 RB0216 or SMB20225 SWALL:Q9R9P4 (EMBL:AF178441) (228 aa) fasta scores: E(): 3.4e-09, 35.02% id in 197 aa; hypothetical protein 2855130..2855873 Bordetella parapertussis 12822 1665263 NP_884879.1 CDS BPP2658 NC_002928.3 2856383 2856871 R Similar to Anabaena sp. hypothetical protein ALR3394 SWALL:Q8YRQ0 (EMBL:AP003592) (171 aa) fasta scores: E(): 7.7e-25, 46.15% id in 156 aa, and to Rhizobium meliloti hypothetical membrane-anchored protein SMB21362 or RB0938 SWALL:Q92UZ6 (EMBL:AL603645) (146 aa) fasta scores: E(): 7.4e-12, 30.13% id in 146 aa; hypothetical protein complement(2856383..2856871) Bordetella parapertussis 12822 1665265 NP_884880.1 CDS BPP2659 NC_002928.3 2856923 2857342 R hypothetical protein complement(2856923..2857342) Bordetella parapertussis 12822 1665266 NP_884881.1 CDS BPP2660 NC_002928.3 2857426 2858166 D hypothetical protein 2857426..2858166 Bordetella parapertussis 12822 1665267 NP_884882.1 CDS BPP2661 NC_002928.3 2858223 2858822 D hypothetical protein 2858223..2858822 Bordetella parapertussis 12822 1665268 NP_884883.1 CDS BPP2662 NC_002928.3 2858954 2859427 D hypothetical protein 2858954..2859427 Bordetella parapertussis 12822 1665269 NP_884884.1 CDS BPP2663 NC_002928.3 2859432 2860439 R Similar to Bacillus subtilis general stress protein 39 YdaD SWALL:GS39_BACSU (SWALL:P80873) (285 aa) fasta scores: E(): 3.5e-43, 51.07% id in 280 aa, and to Rhizobium loti oxidoreductase, short-chain dehydrogenase/reductase Mll6858 SWALL:Q987Y1 (EMBL:AP003010) (287 aa) fasta scores: E(): 5.3e-58, 60.21% id in 284 aa; short chain dehydrogenase complement(2859432..2860439) Bordetella parapertussis 12822 1665270 NP_884885.1 CDS BPP2665 NC_002928.3 2862969 2863925 R Similar to Pseudomonas aeruginosa hypothetical protein PA2150 SWALL:Q9I1W5 (EMBL:AE004642) (293 aa) fasta scores: E(): 1.4e-45, 44.06% id in 295 aa, and to Streptomyces coelicolor hypothetical protein SCO0601 or SCF55.25c SWALL:Q9RJP3 (EMBL:AL132991) (347 aa) fasta scores: E(): 1.8e-28, 38.71% id in 310 aa; hypothetical protein complement(2862969..2863925) Bordetella parapertussis 12822 1665272 NP_884886.1 CDS BPP2666 NC_002928.3 2863945 2864268 R Similar to Escherichia coli, and Escherichia coli O157:H7 ElaB protein or B2266 or Z3526 or ECS3154 SWALL:ELAB_ECOLI (SWALL:P52084) (101 aa) fasta scores: E(): 1.6e-06, 40.74% id in 81 aa, and to Yersinia pestis membrane protein YPOo0570 SWALL:Q8ZID5 (EMBL:AJ414143) (101 aa) fasta scores: E(): 2.1e-05, 36.58% id in 82 aa; hypothetical protein complement(2863945..2864268) Bordetella parapertussis 12822 1665277 NP_884887.1 CDS BPP2667 NC_002928.3 2864329 2864667 R Similar to Pseudomonas putida hypothetical 12.0 kDa protein SWALL:O68643 (EMBL:AF052749) (109 aa) fasta scores: E(): 3.5e-22, 54.63% id in 108 aa, and to Salmonella typhimurium cytoplasmic protein STM1261 SWALL:Q8ZPY1 (EMBL:AE008755) (108 aa) fasta scores: E(): 1.2e-21, 59.4% id in 101 aa; hypothetical protein complement(2864329..2864667) Bordetella parapertussis 12822 1665278 NP_884888.1 CDS BPP2667A NC_002928.3 2864752 2865051 D Similar to Homo sapiens P8 protein p8 SWALL:Q9NRK3 (EMBL:AF216972) (77 aa) fasta scores: E(): 3.2, 35.52% id in 76 aa; hypothetical protein 2864752..2865051 Bordetella parapertussis 12822 1665279 NP_884889.1 CDS BPP2668 NC_002928.3 2865037 2866062 R ortholog of Bordetella pertussis (BX470248) BP1332A; Similar to Pseudomonas aeruginosa hypothetical protein PA2244 SWALL:Q9I1M5 (EMBL:AE004650) (333 aa) fasta scores: E(): 2.7e-66, 56.36% id in 330 aa, and to Rhizobium meliloti DNA topoisomerase I protein RB1274 or SMB21445 SWALL:Q92U65 (EMBL:AL603646) (351 aa) fasta scores: E(): 8.8e-42, 40.82% id in 338 aa; hypothetical protein complement(2865037..2866062) Bordetella parapertussis 12822 1665280 NP_884890.1 CDS BPP2669 NC_002928.3 2866059 2866781 R ortholog of Bordetella pertussis (BX470248) BP1333; Similar to Pseudomonas aeruginosa hypothetical protein PA2141 SWALL:Q9I1X4 (EMBL:AE004641) (182 aa) fasta scores: E(): 3e-18, 40.64% id in 187 aa, and to Mycobacterium leprae cina-like protein CinA or ML2015 or MLCB561.17 SWALL:CINA_MYCLE (SWALL:Q9X7D6) (428 aa) fasta scores: E(): 8.7e-12, 41.95% id in 143 aa; hypothetical protein complement(2866059..2866781) Bordetella parapertussis 12822 1665281 NP_884891.1 CDS BPP2670 NC_002928.3 2866799 2867554 R ortholog of Bordetella pertussis (BX470248) BP1334; hypothetical protein complement(2866799..2867554) Bordetella parapertussis 12822 1665282 NP_884892.1 CDS BPP2671 NC_002928.3 2867541 2868686 R ortholog of Bordetella pertussis (BX470248) BP1335; hypothetical protein complement(2867541..2868686) Bordetella parapertussis 12822 1665283 NP_884893.1 CDS BPP2672 NC_002928.3 2868740 2869687 R ortholog of Bordetella pertussis (BX470248) BP1338; hypothetical protein complement(2868740..2869687) Bordetella parapertussis 12822 1665284 NP_884894.1 CDS BPP2674 NC_002928.3 2870836 2871594 R ortholog of Bordetella pertussis (BX470248) BP1340; hypothetical protein complement(2870836..2871594) Bordetella parapertussis 12822 1665286 NP_884895.1 CDS BPP2675 NC_002928.3 2871688 2871900 D ortholog of Bordetella pertussis (BX470248) BP1341; No significant database matches; hypothetical protein 2871688..2871900 Bordetella parapertussis 12822 1667092 NP_884896.1 CDS BPP2676 NC_002928.3 2871973 2872605 D ortholog of Bordetella pertussis (BX470248) BP1342; hypothetical protein 2871973..2872605 Bordetella parapertussis 12822 1667093 NP_884897.1 CDS mxcB NC_002928.3 2872631 2873431 D ortholog of Bordetella pertussis (BX470248) BP1343; iron utilization protein 2872631..2873431 Bordetella parapertussis 12822 1667094 NP_884898.1 CDS BPP2679 NC_002928.3 2876181 2879600 R ortholog of Bordetella pertussis (BX470248) BP1345; hypothetical protein complement(2876181..2879600) Bordetella parapertussis 12822 1667096 NP_884899.1 CDS BPP2680 NC_002928.3 2879608 2880513 R ortholog of Bordetella pertussis (BX470248) BP1346; LysR family transcriptional regulator complement(2879608..2880513) Bordetella parapertussis 12822 1667097 NP_884900.1 CDS BPP2681 NC_002928.3 2880652 2881230 D ortholog of Bordetella pertussis (BX470248) BP1347; reductase 2880652..2881230 Bordetella parapertussis 12822 1667098 NP_884901.1 CDS BPP2683 NC_002928.3 2882224 2883264 R ortholog of Bordetella pertussis (BX470248) BP1355; LacI family transcriptional regulator complement(2882224..2883264) Bordetella parapertussis 12822 1667100 NP_884902.1 CDS leuD NC_002928.3 2883252 2883860 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(2883252..2883860) Bordetella parapertussis 12822 1667101 NP_884903.1 CDS BPP2686 NC_002928.3 2885459 2886454 D ortholog of Bordetella pertussis (BX470248) BP1358; hypothetical protein 2885459..2886454 Bordetella parapertussis 12822 1667504 NP_884904.1 CDS BPP2687 NC_002928.3 2886474 2887652 D ortholog of Bordetella pertussis (BX470248) BP1359; mandelate racemase 2886474..2887652 Bordetella parapertussis 12822 1667505 NP_884905.1 CDS BPP2690 NC_002928.3 2888739 2889161 R Similar to Pseudomonas aeruginosa hypothetical protein PA3123 SWALL:Q9HZA1 (EMBL:AE004736) (125 aa) fasta scores: E(): 2.9e-26, 62.5% id in 120 aa, and to Rhizobium loti translation initiation inhibitor MLL4450 SWALL:Q98E15 (EMBL:AP003004) (132 aa) fasta scores: E(): 1.1e-15, 42.4% id in 125 aa; hypothetical protein complement(2888739..2889161) Bordetella parapertussis 12822 1667507 NP_884906.1 CDS BPP2691 NC_002928.3 2889275 2889688 R hypothetical protein complement(2889275..2889688) Bordetella parapertussis 12822 1667508 NP_884907.1 CDS cycH NC_002928.3 2889767 2890996 R Similar to Rhizobium meliloti cytochrome C-type biogenesis protein CycH or R01017 or SMC02361 SWALL:CYCH_RHIME (SWALL:P45400) (381 aa) fasta scores: E(): 1.7e-16, 30.64% id in 310 aa, and to Bradyrhizobium japonicum cytochrome C-type biogenesis protein CycH SWALL:CYCH_BRAJA (SWALL:P45399) (369 aa) fasta scores: E(): 6.7e-15, 26.43% id in 367 aa; cytochrome C-type biogenesis protein complement(2889767..2890996) Bordetella parapertussis 12822 1667509 NP_884908.1 CDS ccmH NC_002928.3 2890993 2891415 R Similar to Pseudomonas aeruginosa cytochrome C-type biogenesis protein CcmH or PA1482 SWALL:Q9I3N0 (EMBL:AE004577) (155 aa) fasta scores: E(): 3.9e-16, 46.1% id in 154 aa, and to Escherichia coli cytochrome C-type biogenesis protein NrfF precursor or B4075 SWALL:NRFF_ECOLI (SWALL:P32711) (127 aa) fasta scores: E(): 2.6e-13, 46.31% id in 95 aa; cytochrome C-type biogenesis protein complement(2890993..2891415) Bordetella parapertussis 12822 1667510 NP_884909.1 CDS ccmG NC_002928.3 2891412 2891933 R Similar to Pseudomonas aeruginosa thiol:disulfide interchange protein DsbE or CcmG or PA1481 SWALL:DSBE_PSEAE (SWALL:Q9I3N1) (180 aa) fasta scores: E(): 2.6e-27, 47.02% id in 168 aa, and to Escherichia coli, and Escherichia coli O157:H7 thiol:disulfide interchange protein DsbE or CcmG or B2195 or Z3452 or ECS3084 SWALL:DSBE_ECOLI (SWALL:P33926) (185 aa) fasta scores: E(): 2.7e-23, 43.6% id in 172 aa; cytochrome C-type biogenesis protein complement(2891412..2891933) Bordetella parapertussis 12822 1667511 NP_884910.1 CDS ccmF NC_002928.3 2891933 2893927 R Similar to Pseudomonas fluorescens cytochrome C-type biogenesis protein CycK SWALL:CCMF_PSEFL (SWALL:P52225) (660 aa) fasta scores: E(): 4.8e-131, 54.42% id in 656 aa, and to Escherichia coli cytochrome C-type biogenesis protein CcmF or B2196 SWALL:CCMF_ECOLI (SWALL:P33927) (647 aa) fasta scores: E(): 2.2e-95, 51.89% id in 661 aa; cytochrome C-type biogenesis protein complement(2891933..2893927) Bordetella parapertussis 12822 1668356 NP_884911.1 CDS ccmE NC_002928.3 2893924 2894385 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(2893924..2894385) Bordetella parapertussis 12822 1668357 NP_884912.1 CDS BPP2696A NC_002928.3 2894372 2894524 R Similar to Pseudomonas aeruginosa hypothetical protein Pa1478 SWALL:Q9I3N4 (EMBL:AE004577) (58 aa) fasta scores: E(): 6.5, 33.33% id in 39 aa; hypothetical protein complement(2894372..2894524) Bordetella parapertussis 12822 1668358 NP_884913.1 CDS ccmC NC_002928.3 2894521 2895279 R Similar to Pseudomonas aeruginosa heme exporter protein Ccmc or PA1477 SWALL:Q9I3N5 (EMBL:AE004577) (252 aa) fasta scores: E(): 2.6e-39, 46.35% id in 233 aa, and to Escherichia coli, and Escherichia coli O157:H7 heme exporter protein C CcmC or B2199 or Z3456 or ECS3088 SWALL:CCMC_ECOLI (SWALL:P33929) (245 aa) fasta scores: E(): 1.2e-33, 44.79% id in 221 aa; heme export protein complement(2894521..2895279) Bordetella parapertussis 12822 1668359 NP_884914.1 CDS ccmB NC_002928.3 2895314 2895979 R Similar to Vibrio cholerae heme exporter protein B VC2056 SWALL:Q9KQE4 (EMBL:AE004279) (222 aa) fasta scores: E(): 1.8e-34, 50.22% id in 221 aa, and to Escherichia coli, and Escherichia coli O157:H7 heme exporter protein B CcmB or B2200 or Z3457 or ECS3089 SWALL:CCMB_ECOLI (SWALL:P33930) (220 aa) fasta scores: E(): 3.6e-31, 46.54% id in 217 aa; Heme exporter protein B complement(2895314..2895979) Bordetella parapertussis 12822 1668360 NP_884915.1 CDS ccmA NC_002928.3 2895945 2896619 R Similar to Haemophilus influenzae heme exporter protein A CcmA or HI1089 SWALL:CCMA_HAEIN (SWALL:P45032) (212 aa) fasta scores: E(): 1.5e-17, 40.42% id in 188 aa, and to Escherichia coli heme exporter protein A CcmA or B2201 SWALL:CCMA_ECOLI (SWALL:P33931) (207 aa) fasta scores: E(): 6.7e-16, 40.21% id in 189 aa; heme export protein complement(2895945..2896619) Bordetella parapertussis 12822 1668361 NP_884916.1 CDS napC NC_002928.3 2896606 2897256 R Similar to Escherichia coli, and Escherichia coli O157:H7 cytochrome C-type protein NapC or B2202 or Z3459 or ECS3091 SWALL:NAPC_ECOLI (SWALL:P33932) (200 aa) fasta scores: E(): 1e-42, 59.14% id in 186 aa, and to Pseudomonas aeruginosa cytochrome C-type protein NapC or PA1172 SWALL:Q9I4G5 (EMBL:AE004547) (198 aa) fasta scores: E(): 1e-60, 76.04% id in 192 aa; cytochrome C-type protein complement(2896606..2897256) Bordetella parapertussis 12822 1665469 NP_884917.1 CDS napB NC_002928.3 2897264 2897740 R Similar to Alcaligenes eutrophus diheme cytochrome C precursor NapB SWALL:NAPB_ALCEU (SWALL:P39186) (169 aa) fasta scores: E(): 1.5e-34, 61.93% id in 155 aa, and to Escherichia coli diheme cytochrome C precursor NapB or B2203 SWALL:NAPB_ECOLI (SWALL:P33933) (149 aa) fasta scores: E(): 3.1e-16, 45.45% id in 132 aa; diheme cytochrome C precursor complement(2897264..2897740) Bordetella parapertussis 12822 1665470 NP_884918.1 CDS napA NC_002928.3 2897760 2900255 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(2897760..2900255) Bordetella parapertussis 12822 1665471 NP_884919.1 CDS napD NC_002928.3 2900239 >2900451 R Similar to Pseudomonas sp. G-179 NapD napD SWALL:Q9Z3W5 (EMBL:AF083948) (93 aa) fasta scores: E(): 0.12, 30.15% id in 63 aa, and to Pseudomonas aeruginosa napd protein of periplasmic nitrate reductase napd or pa1175 SWALL:Q9I4G2 (EMBL:AE004547) (109 aa) fasta scores: E(): 0.087, 36.06% id in 61 aa; component of nitrate reductase system (partial) complement(2900239..>2900451) Bordetella parapertussis 12822 1665472 NP_884920.1 CDS BPP2703 NC_002928.3 2900419 2900982 D Similar to Clostridium acetobutylicum glutamine ABC transporter, ATP-binding protein CAC0378 SWALL:Q97M22 (EMBL:AE007552) (243 aa) fasta scores: E(): 2.2e-34, 51.93% id in 233 aa, and to Escherichia coli hypothetical amino-acid ABC transporter ATP-binding protein YecC or B1917 SWALL:YECC_ECOLI (SWALL:P37774) (250 aa) fasta scores: E(): 8.6e-34, 47.6% id in 250 aa; ABC transporter ATP-binding protein 2900419..2900982 Bordetella parapertussis 12822 1666989 NP_884921.1 CDS BPP2704 NC_002928.3 2901012 2901773 R Similar to Rhizobium meliloti stomatin-like protein RB1114 or SMB20989 SWALL:Q92UL3 (EMBL:AL603646) (256 aa) fasta scores: E(): 1.1e-64, 76.54% id in 243 aa, and to Archaeoglobus fulgidus hypothetical protein AF1420 SWALL:YE20_ARCFU (SWALL:O28852) (249 aa) fasta scores: E(): 5.5e-47, 55.93% id in 236 aa, and to Homo sapiens erythrocyte band 7 integral membrane protein Epb72 or Bnd7 SWALL:BAN7_HUMAN (SWALL:P27105) (287 aa) fasta scores: E(): 7.2e-36, 44% id in 250 aa; hypothetical protein complement(2901012..2901773) Bordetella parapertussis 12822 1666990 NP_884922.1 CDS BPP2707 NC_002928.3 2903420 >2903905 R Similar to the C-terminal region of Alcaligenes eutrophus maleylacetate reductase I TfdFI or TfdF SWALL:TFF1_ALCEU (SWALL:P27137) (354 aa) fasta scores: E(): 1.9e-09, 29.6% id in 152 aa, and of Pseudomonas sp. maleylacetate reductase TcbF SWALL:TCBF_PSESQ (SWALL:P27101) (352 aa) fasta scores: E(): 9.4e-08, 30.38% id in 158 aa; iron-containing alcohol dehydrogenase (partial) complement(2903420..>2903905) Bordetella parapertussis 12822 1666992 NP_884923.1 CDS BPP2709 NC_002928.3 2905194 2905490 R ortholog of Bordetella pertussis (BX470248) BP1688; hypothetical protein complement(2905194..2905490) Bordetella parapertussis 12822 1666994 NP_884924.1 CDS BPP2710 NC_002928.3 2905597 2906514 D ortholog of Bordetella pertussis (BX470248) BP1687; LysR family transcriptional regulator 2905597..2906514 Bordetella parapertussis 12822 1666995 NP_884925.1 CDS BPP2711 NC_002928.3 2906519 2907232 R ortholog of Bordetella pertussis (BX470248) BP1686; short chain dehydrogenase complement(2906519..2907232) Bordetella parapertussis 12822 1668045 NP_884926.1 CDS BPP2712 NC_002928.3 2907246 2908217 R ortholog of Bordetella pertussis (BX470248) BP1685; hypothetical protein complement(2907246..2908217) Bordetella parapertussis 12822 1668046 NP_884927.1 CDS BPP2713 NC_002928.3 2908278 2910008 R ortholog of Bordetella pertussis (BX470248) BP1684; hypothetical protein complement(2908278..2910008) Bordetella parapertussis 12822 1668047 NP_884928.1 CDS BPP2714 NC_002928.3 2910227 2910607 D ortholog of Bordetella pertussis (BX470248) BP1683; transcriptional regulator 2910227..2910607 Bordetella parapertussis 12822 1668048 NP_884929.1 CDS BPP2715 NC_002928.3 2910611 2911798 D ortholog of Bordetella pertussis (BX470248) BP1682; hypothetical protein 2910611..2911798 Bordetella parapertussis 12822 1668049 NP_884930.1 CDS arsC NC_002928.3 2911801 2912244 D ortholog of Bordetella pertussis (BX470248) BP1681; arsenate reductase 2911801..2912244 Bordetella parapertussis 12822 1668050 NP_884931.1 CDS arsH NC_002928.3 2912237 2912959 D ortholog of Bordetella pertussis (BX470248) BP1680; NADPH-dependent FMN reductase 2912237..2912959 Bordetella parapertussis 12822 1668051 NP_884932.1 CDS BPP2719 NC_002928.3 2913722 2914717 D Similar to Rhizobium meliloti hypothetical protein RA1058 or SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.6e-42, 43.42% id in 327 aa, and to Agrobacterium tumefaciens hypothetical protein ATU4727 or AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 7.8e-39, 40.81% id in 321 aa; hypothetical protein 2913722..2914717 Bordetella parapertussis 12822 1668053 NP_884933.1 CDS BPP2720 NC_002928.3 2914757 2915962 D Similar to Bordetella pertussis hypothetical 45.1 kDa protein SWALL:O30447 (EMBL:AF006000) (406 aa) fasta scores: E(): 1.3e-46, 41.37% id in 394 aa, and to Salmonella typhimurium monooxygenase STM2175 SWALL:Q8ZNM3 (EMBL:AE008797) (397 aa) fasta scores: E(): 8.1e-37, 34.42% id in 398 aa; monooxygenase 2914757..2915962 Bordetella parapertussis 12822 1668054 NP_884934.1 CDS dadA3 NC_002928.3 2916306 2917517 D catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 2916306..2917517 Bordetella parapertussis 12822 1666174 NP_884935.1 CDS BPP2722 NC_002928.3 2917548 2918015 R Similar to Pseudomonas aeruginosa hypothetical protein PA5185 SWALL:Q9HU04 (EMBL:AE004931) (147 aa) fasta scores: E(): 2.6e-29, 55.4% id in 148 aa, and to Mycobacterium tuberculosis hypothetical protein Rv0163 or MT0172 or MTCI28.03 SWALL:O07408 (EMBL:Z97050) (151 aa) fasta scores: E(): 2.4e-24, 44.21% id in 147 aa; 4-hydroxybenzoyl-CoA thioesterase complement(2917548..2918015) Bordetella parapertussis 12822 1666175 NP_884936.1 CDS BPP2723 NC_002928.3 2918012 2919166 R Similar to Agrobacterium tumefaciens alcohol dehydrogenase AttL or ATU5138 or AGR_PAT_199 SWALL:AAL45828 (EMBL:AE008938) (386 aa) fasta scores: E(): 1.1e-69, 54.94% id in 384 aa, and to Pseudomonas putida alcohol dehydrogenase AdhA SWALL:O68647 (EMBL:AF052750) (382 aa) fasta scores: E(): 1.6e-36, 37.27% id in 381 aa; alcohol dehydrogenase complement(2918012..2919166) Bordetella parapertussis 12822 1666176 NP_884937.1 CDS BPP2725 NC_002928.3 2920342 2922426 R Similar to Ralstonia solanacearum probable trifunctonal: enoyl-CoA hydratase and delta3-cis-delta2-trans-enoyl-CoA isomerase and 3-hydroxyacyl-CoA dehydrogenase oxidoreductase RSC1759 or RS02946 SWALL:Q8XYJ9 (EMBL:AL646066) (706 aa) fasta scores: E(): 4.5e-100, 45.23% id in 692 aa, and to Rhizobium loti enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase MLL4199 SWALL:Q98EK7 (EMBL:AP003003) (689 aa) fasta scores: E(): 5.2e-86, 43.34% id in 699 aa; enoyl-CoA isomerase complement(2920342..2922426) Bordetella parapertussis 12822 1666178 NP_884938.1 CDS BPP2726 NC_002928.3 2922437 2923411 R Similar to Agrobacterium tumefaciens hypothetical protein atu4727 atu4727 or agr_l_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 1.5e-33, 36.95% id in 322 aa, and to Rhizobium meliloti hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 6e-32, 37.02% id in 316 aa; hypothetical protein complement(2922437..2923411) Bordetella parapertussis 12822 1665067 NP_884939.1 CDS paaG NC_002928.3 2923442 2924242 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2923442..2924242) Bordetella parapertussis 12822 1665068 NP_884940.1 CDS caiD NC_002928.3 2924271 2925029 R Similar to Rhizobium loti carnitine racemase MLL6015 SWALL:Q98AG1 (EMBL:AP003008) (257 aa) fasta scores: E(): 1.6e-28, 40.76% id in 260 aa, and to Escherichia coli carnitine racemase CaiD or B0036 SWALL:CAID_ECOLI (SWALL:P31551) (297 aa) fasta scores: E(): 1.1e-26, 40.84% id in 262 aa; carnitinyl-CoA dehydratase complement(2924271..2925029) Bordetella parapertussis 12822 1665069 NP_884941.1 CDS BPP2729 NC_002928.3 2925026 2926225 R Similar to Pseudomonas aeruginosa hypothetical protein PA0446 SWALL:Q9I672 (EMBL:AE004482) (407 aa) fasta scores: E(): 1.2e-74, 47.94% id in 390 aa, and to Brucella melitensis alpha-methylacyl-coa racemase BMEII1019 SWALL:Q8YB81 (EMBL:AE009734) (415 aa) fasta scores: E(): 7.1e-72, 47.02% id in 387 aa. Note: Also similar to BPP4114 (410 aa) fasta scores: E(): 1.2e-70, 50.882% identity in 397 aa overlap; hypothetical protein complement(2925026..2926225) Bordetella parapertussis 12822 1665070 NP_884942.1 CDS BPP2730 NC_002928.3 2926270 2927241 R Similar to Rhizobium meliloti hypothetical protein RA1058 or SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1e-50, 48.13% id in 322 aa, and to Agrobacterium tumefaciens hypothetical protein ATU4727 or AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 7.2e-49, 48.12% id in 320 aa; hypothetical protein complement(2926270..2927241) Bordetella parapertussis 12822 1665071 NP_884943.1 CDS BPP2731 NC_002928.3 2927388 2928284 D Similar to Pseudomonas aeruginosa probable transcriptional regulator PA5029 SWALL:Q9HUE0 (EMBL:AE004916) (301 aa) fasta scores: E(): 6.2e-36, 39.79% id in 289 aa, and to Bacillus subtilis als operon regulatory protein AlsR SWALL:ALSR_BACSU (SWALL:Q04778) (302 aa) fasta scores: E(): 3.5e-31, 32.63% id in 285 aa; LysR family transcriptional regulator 2927388..2928284 Bordetella parapertussis 12822 1665072 NP_884944.1 CDS BPP2732 NC_002928.3 2928375 2929313 D Similar to Rhizobium meliloti oxidoreductase R01692 or SMC00264 SWALL:Q92PP4 (EMBL:AL591788) (267 aa) fasta scores: E(): 6.4e-36, 49.23% id in 260 aa, and to Agrobacterium tumefaciens dehydrogenase ATU4825 or AGR_L_117 SWALL:AAL45619 (EMBL:AE009411) (271 aa) fasta scores: E(): 3.5e-34, 47.36% id in 266 aa; short chain dehydrogenase 2928375..2929313 Bordetella parapertussis 12822 1665073 NP_884945.1 CDS BPP2733 NC_002928.3 2929458 2930474 D Similar to Rhizobium meliloti hypothetical protein RA1058 or SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.9e-38, 40.74% id in 324 aa, and to Agrobacterium tumefaciens hypothetical protein ATU4727 or AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 4.7e-37, 39.63% id in 328 aa; hypothetical protein 2929458..2930474 Bordetella parapertussis 12822 1665074 NP_884946.1 CDS BPP2734 NC_002928.3 2930554 2930973 D Low similarity to Thauera aromatica BbsA SWALL:Q9KJF4 (EMBL:AF173961) (144 aa) fasta scores: E(): 4.7e-05, 26.56% id in 128 aa; hypothetical protein 2930554..2930973 Bordetella parapertussis 12822 1665075 NP_884947.1 CDS BPP2735 NC_002928.3 2930993 2932135 D Similar to Thauera aromatica benzoylsuccinyl-CoA thiolase BbsB SWALL:Q9KJF3 (EMBL:AF173961) (385 aa) fasta scores: E(): 1.7e-57, 45.38% id in 379 aa, and to Pyrobaculum aerophilum acetyl-CoA C-acyltransferase PAE2471 SWALL:Q8ZV38 (EMBL:AE009878) (379 aa) fasta scores: E(): 6.1e-37, 36.01% id in 386 aa; thiolase 2930993..2932135 Bordetella parapertussis 12822 1665076 NP_884948.1 CDS BPP2736 NC_002928.3 2932173 2933399 D Similar to Brucella melitensis alpha-methylacyl-CoA racemase BMEII1019 SWALL:Q8YB81 (EMBL:AE009734) (415 aa) fasta scores: E(): 1.6e-49, 38.27% id in 405 aa, and to Thermoplasma volcanium L-carnitine dehydratase TV1186 or TVG1215416 SWALL:Q979H5 (EMBL:AP000995) (399 aa) fasta scores: E(): 7.4e-49, 36.7% id in 395 aa; hypothetical protein 2932173..2933399 Bordetella parapertussis 12822 1665735 NP_884949.1 CDS BPP2737 NC_002928.3 2933551 2934378 D Similar to Bacillus halodurans transcriptional regulator BH2137 SWALL:Q9KAZ9 (EMBL:AP001514) (251 aa) fasta scores: E(): 4.1e-13, 26.5% id in 249 aa, and to Thermotoga maritima transcriptional regulator, IclR family TMm0065 SWALL:Q9WXS0 (EMBL:AE001693) (246 aa) fasta scores: E(): 3.9e-11, 23.69% id in 249 aa; transcriptional regulatory protein 2933551..2934378 Bordetella parapertussis 12822 1665736 NP_884950.1 CDS BPP2738 NC_002928.3 2934318 2934959 R ortholog of Bordetella pertussis (BX470248) BP1677; hypothetical protein complement(2934318..2934959) Bordetella parapertussis 12822 1665737 NP_884951.1 CDS BPP2739 NC_002928.3 2934956 2936350 R ortholog of Bordetella pertussis (BX470248) BP1676; sulfatase complement(2934956..2936350) Bordetella parapertussis 12822 1665738 NP_884952.1 CDS BPP2740 NC_002928.3 2936365 2937384 R ortholog of Bordetella pertussis (BX470248) BP1675; hypothetical protein complement(2936365..2937384) Bordetella parapertussis 12822 1665739 NP_884953.1 CDS BPP2741 NC_002928.3 2937411 2938397 D ortholog of Bordetella pertussis (BX470248) BP1674; LysR family transcriptional regulator 2937411..2938397 Bordetella parapertussis 12822 1665740 NP_884954.1 CDS gst NC_002928.3 2938516 2939139 D ortholog of Bordetella pertussis (BX470248) BP1664; glutathione S-transferase 2938516..2939139 Bordetella parapertussis 12822 1665741 NP_884955.1 CDS BPP2743 NC_002928.3 2939253 2939564 D ortholog of Bordetella pertussis (BX470248) BP1663; hypothetical protein 2939253..2939564 Bordetella parapertussis 12822 1665742 NP_884956.1 CDS BPP2744 NC_002928.3 2939567 2939866 D ortholog of Bordetella pertussis (BX470248) BP1662; DNA-binding protein 2939567..2939866 Bordetella parapertussis 12822 1665743 NP_884957.1 CDS BPP2746 NC_002928.3 2942602 2943276 D ortholog of Bordetella pertussis (BX470248) BP1659; response regulatory protein 2942602..2943276 Bordetella parapertussis 12822 1665745 NP_884958.1 CDS BPP2747 NC_002928.3 2943269 2945128 D ortholog of Bordetella pertussis (BX470248) BP1658; two-component sensor histidine kinase 2943269..2945128 Bordetella parapertussis 12822 1667733 NP_884959.1 CDS BPP2748 NC_002928.3 2945153 2946115 R ortholog of Bordetella pertussis (BX470248) BP1657; hypothetical protein complement(2945153..2946115) Bordetella parapertussis 12822 1667734 NP_884960.1 CDS BPP2750 NC_002928.3 2948744 2950372 R ortholog of Bordetella pertussis (BX470248) BP1635; arylsulfatase complement(2948744..2950372) Bordetella parapertussis 12822 1667736 NP_884961.1 CDS BPP2751 NC_002928.3 2950422 2951456 R ortholog of Bordetella pertussis (BX470248) BP1636; nonspecific acid phosphatase precursor complement(2950422..2951456) Bordetella parapertussis 12822 1667737 NP_884962.1 CDS BPP2753 NC_002928.3 2952780 2954285 R ortholog of Bordetella pertussis (BX470248) BP1638; hypothetical protein complement(2952780..2954285) Bordetella parapertussis 12822 1665093 NP_884963.1 CDS BPP2755 NC_002928.3 2955269 2955760 R ortholog of Bordetella pertussis (BX470248) BP1639A; hypothetical protein complement(2955269..2955760) Bordetella parapertussis 12822 1665095 NP_884964.1 CDS BPP2756 NC_002928.3 2955757 2956698 R ortholog of Bordetella pertussis (BX470248) BP1640; hypothetical protein complement(2955757..2956698) Bordetella parapertussis 12822 1665096 NP_884965.1 CDS BPP2758 NC_002928.3 2957727 2958869 R ortholog of Bordetella pertussis (BX470248) BP1642; hypothetical protein complement(2957727..2958869) Bordetella parapertussis 12822 1665098 NP_884966.1 CDS BPP2759 NC_002928.3 2959213 2960175 D ortholog of Bordetella pertussis (BX470248) BP1643; hypothetical protein 2959213..2960175 Bordetella parapertussis 12822 1665099 NP_884967.1 CDS BPP2760 NC_002928.3 2960294 2961346 D ortholog of Bordetella pertussis (BX470248) BP1644; hypothetical protein 2960294..2961346 Bordetella parapertussis 12822 1665100 NP_884968.1 CDS BPP2761 NC_002928.3 2961393 2962151 D ortholog of Bordetella pertussis (BX470248) BP1645; short-chain dehydrogenase 2961393..2962151 Bordetella parapertussis 12822 1665101 NP_884969.1 CDS BPP2762 NC_002928.3 2962341 2963078 D ortholog of Bordetella pertussis (BX470248) BP1646; hypothetical protein 2962341..2963078 Bordetella parapertussis 12822 1665102 NP_884970.1 CDS BPP2763 NC_002928.3 2963075 2963530 R Similar to Pseudomonas aeruginosa hypothetical protein PA0474 SWALL:Q9I644 (EMBL:AE004485) (134 aa) fasta scores: E(): 2.7e-13, 39.39% id in 132 aa, and to Caulobacter crescentus hypothetical protein CC3309 SWALL:Q9A395 (EMBL:AE005993) (157 aa) fasta scores: E(): 1.2e-06, 32.37% id in 139 aa; hypothetical protein complement(2963075..2963530) Bordetella parapertussis 12822 1665292 NP_884971.1 CDS BPP2764 NC_002928.3 2963801 2964172 D Very low similarity to Rhizobium loti hypothetical protein MSl6954 SWALL:Q987R0 (EMBL:AP003010) (93 aa) fasta scores: E(): 0.0023, 32.58% id in 89 aa, and to Ralstonia solanacearum transcription regulator protein HipB or RSP1252 or RS03197 SWALL:Q8XQH3 (EMBL:AL646083) (88 aa) fasta scores: E(): 0.029, 36.98% id in 73 aa; transcriptional regulator 2963801..2964172 Bordetella parapertussis 12822 1665293 NP_884972.1 CDS BPP2765 NC_002928.3 2964169 2965515 D Similar to Rhizobium loti hypothetical protein MLL6953 SWALL:Q987R1 (EMBL:AP003010) (420 aa) fasta scores: E(): 5.9e-31, 34.54% id in 411 aa, and to Neisseria meningitidis hypothetical protein NMB1761 SWALL:Q9JY37 (EMBL:AE002525) (417 aa) fasta scores: E(): 2.2e-14, 28.57% id in 385 aa; hypothetical protein 2964169..2965515 Bordetella parapertussis 12822 1665294 NP_884973.1 CDS BPP2766 NC_002928.3 2965562 2966302 R Similar to Streptomyces coelicolor gntr family regulatory protein sco4019 or 2sc10a7.23 SWALL:Q9ADN8 (EMBL:AL583945) (230 aa) fasta scores: E(): 1.7e-19, 36.66% id in 210 aa, and to Rhizobium loti transcription regulator mlr4761 SWALL:Q98DC7 (EMBL:AP003004) (247 aa) fasta scores: E(): 1e-18, 34.68% id in 222 aa; regulatory protein complement(2965562..2966302) Bordetella parapertussis 12822 1665295 NP_884974.1 CDS BPP2767 NC_002928.3 2966414 2967253 D Similar to Pseudomonas putida 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase IpbD SWALL:O51858 (EMBL:AF006691) (282 aa) fasta scores: E(): 3.5e-23, 32.17% id in 258 aa, and to Pseudomonas putida 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase TodF SWALL:TODF_PSEPU (SWALL:P23133) (276 aa) fasta scores: E(): 1.1e-22, 31.87% id in 251 aa; hydrolase 2966414..2967253 Bordetella parapertussis 12822 1665296 NP_884975.1 CDS BPP2768 NC_002928.3 2967262 2968614 D Similar to Caulobacter crescentus xaa-pro dipeptidase, CC3125 SWALL:Q9A3S7 (EMBL:AE005976) (431 aa) fasta scores: E(): 1.3e-27, 29.78% id in 423 aa, and to Sulfolobus solfataricus prolidase PepQ-like2 or SSO2040 SWALL:Q97WS6 (EMBL:AE006811) (408 aa) fasta scores: E(): 2.6e-18, 26.21% id in 370 aa; dipeptidase 2967262..2968614 Bordetella parapertussis 12822 1665297 NP_884976.1 CDS BPP2769 NC_002928.3 2968671 2969090 D Similar to Streptomyces coelicolor hypothetical protein SCO6478 or SC9C7.14c SWALL:Q9ZBJ6 (EMBL:AL035161) (132 aa) fasta scores: E(): 2.8e-09, 40.65% id in 123 aa, and to Rhizobium meliloti hypothetical protein RA1232 or SMA2289 SWALL:Q92XL2 (EMBL:AE007308) (130 aa) fasta scores: E(): 2e-06, 31.45% id in 124 aa; hypothetical protein 2968671..2969090 Bordetella parapertussis 12822 1665298 NP_884977.1 CDS BPP2770 NC_002928.3 2969115 2969999 D Similar to Bacillus subtilis YisK protein SWALL:O06724 (EMBL:Y09476) (301 aa) fasta scores: E(): 1.1e-39, 39.8% id in 309 aa, and to Ralstonia solanacearum hypothetical protein RSC1824 or RS04254 SWALL:Q8XYD4 (EMBL:AL646066) (319 aa) fasta scores: E(): 5.1e-34, 40% id in 270 aa; hypothetical protein 2969115..2969999 Bordetella parapertussis 12822 1665299 NP_884978.1 CDS BPP2771 NC_002928.3 2970039 2971592 D Similar to Escherichia coli, and Escherichia coli O157:H7 L-arabinose transport ATP-binding protein AraG or B1900 or Z2953 or ECS2608 (504 aa) fasta scores: E()=1.3e-48, 36.34% id in 476 aa, and to Ralstonia solanacearum probable L-arabinose ATP-binding ABC transporter protein AraG or RSC2757 or RS00097 SWALL:Q8XVS2 (EMBL:AL646071) (511 aa) fasta scores: E(): 1.3e-47, 38.15% id in 477 aa; sugar ABC transporter ATP-binding protein 2970039..2971592 Bordetella parapertussis 12822 1665300 NP_884979.1 CDS BPP2772 NC_002928.3 2971582 2972547 D Similar to Escherichia coli, and Escherichia coli O157:H7 ribose transport system permease Rbsc or B3750 or Z5251 or ECS4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 6.3e-32, 39.52% id in 296 aa, and to Clostridium perfringens probable ribose ABC transporter RbsC or CPE1629 SWALL:Q8XJX4 (EMBL:AP003191) (311 aa) fasta scores: E(): 6.9e-32, 35.49% id in 293 aa; sugar ABC transport system, permease 2971582..2972547 Bordetella parapertussis 12822 1665301 NP_884980.1 CDS BPP2773 NC_002928.3 2972588 2973673 D Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein RbsB or ATU1899 or AGR_C_3486 SWALL:AAL42895 (EMBL:AE009144) (309 aa) fasta scores: E(): 6.4e-10, 28.41% id in 271 aa, and to Bacillus subtilis D-ribose-binding protein precursor RbsB SWALL:RBSB_BACSU (SWALL:P36949) (305 aa) fasta scores: E(): 1.5e-07, 22.53% id in 284 aa; sugar ABC transport system, substrate-binding protein 2972588..2973673 Bordetella parapertussis 12822 1665302 NP_884981.1 CDS BPP2774 NC_002928.3 2973775 2974512 D hypothetical protein 2973775..2974512 Bordetella parapertussis 12822 1667534 NP_884982.1 CDS BPP2775 NC_002928.3 2974509 2975294 D hypothetical protein 2974509..2975294 Bordetella parapertussis 12822 1667535 NP_884983.1 CDS BPP2776 NC_002928.3 2975302 2976204 R Similar to Ralstonia solanacearum probable transcription regulator protein RSC2497 or RS01099 SWALL:Q8XWH7 (EMBL:AL646070) (321 aa) fasta scores: E(): 5.6e-27, 34.42% id in 305 aa, and to Escherichia coli transcriptional activator protein LysR or B2839 SWALL:LYSR_ECOLI (SWALL:P03030) (311 aa) fasta scores: E(): 2.9e-14, 29.63% id in 270 aa; LysR family transcriptional regulator complement(2975302..2976204) Bordetella parapertussis 12822 1667536 NP_884984.1 CDS BPP2777 NC_002928.3 2976353 2977375 D Similar to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 3.2e-39, 39.31% id in 323 aa, and to Pseudomonas putida, and Pseudomonas sp. hypothetical 34.5 kDa protein in clcB-clcD intergenic region precursor SWALL:YCLC_PSEPU (SWALL:Q47100) (329 aa) fasta scores: E(): 7.7e-37, 38.78% id in 312 aa; hypothetical protein 2976353..2977375 Bordetella parapertussis 12822 1667537 NP_884985.1 CDS BPP2778 NC_002928.3 2977441 2978424 D Similar to Streptomyces coelicolor agmatinase SpeB or SCC105.01c SWALL:Q9L083 (EMBL:AL163641) (302 aa) fasta scores: E(): 6.9e-38, 40.14% id in 284 aa, and to Streptomyces clavuligerus possible agmatinase Pah SWALL:SPEB_STRCL (SWALL:P37819) (313 aa) fasta scores: E(): 1.1e-31, 35.73% id in 291 aa; agmatinase 2977441..2978424 Bordetella parapertussis 12822 1667538 NP_884986.1 CDS BPP2779 NC_002928.3 2978536 2979570 D Similar to Ralstonia solanacearum signal peptide protein RSC2510 or RS01072 SWALL:Q8XWG4 (EMBL:AL646070) (338 aa) fasta scores: E(): 5.4e-23, 29.96% id in 327 aa, and to Mycobacterium smegmatis C4 decarboxylate binding protein SWALL:Q938B9 (EMBL:AY054120) (353 aa) fasta scores: E(): 9.9e-16, 27.54% id in 334 aa; hypothetical protein 2978536..2979570 Bordetella parapertussis 12822 1667539 NP_884987.1 CDS BPP2780 NC_002928.3 2979549 2980055 D hypothetical protein 2979549..2980055 Bordetella parapertussis 12822 1667540 NP_884988.1 CDS BPP2781 NC_002928.3 2980075 2981361 D Similar to Agrobacterium tumefaciens transmembrane protein DctM SWALL:Q9F7C8 (EMBL:AF282677) (416 aa) fasta scores: E(): 2e-49, 36.67% id in 409 aa, and to Wolinella succinogenes large integral C4-dicarboxylate membrane transport protein, DctM SWALL:Q9ZEJ2 (EMBL:AJ132740) (415 aa) fasta scores: E(): 3.7e-40, 33.49% id in 415 aa; hypothetical protein 2980075..2981361 Bordetella parapertussis 12822 1665461 NP_884989.1 CDS BPP2782 NC_002928.3 2981367 2982110 D Similar to Streptomyces coelicolor transcriptional regulator SCO6256 or SCAH10.21 SWALL:Q9RKT6 (EMBL:AL132824) (245 aa) fasta scores: E(): 8.4e-08, 28.51% id in 242 aa, and to Streptomyces griseus GntR-family transcriptional regulator DasR SWALL:Q8VV01 (EMBL:AB061860) (253 aa) fasta scores: E(): 1.5e-06, 27.03% id in 233 aa; transcriptional regulator 2981367..2982110 Bordetella parapertussis 12822 1665462 NP_884990.1 CDS BPP2783 NC_002928.3 2982164 2982853 D Similar to Caulobacter crescentus carboxymethylenebutenolidase CC3758 SWALL:Q9A213 (EMBL:AE006033) (231 aa) fasta scores: E(): 2.6e-35, 46.93% id in 228 aa, and to Pseudomonas putida, and Pseudomonas sp. carboxymethylenebutenolidase ClcD SWALL:CLCD_PSEPU (SWALL:P11453) (236 aa) fasta scores: E(): 5.3e-27, 41.25% id in 223 aa; carboxymethylenebutenolidase 2982164..2982853 Bordetella parapertussis 12822 1665463 NP_884991.1 CDS BPP2784 NC_002928.3 2982865 2983644 D Similar to Rhizobium loti probable dehydrogenase MLR7106 SWALL:Q987C7 (EMBL:AP003011) (257 aa) fasta scores: E(): 9.6e-26, 42.35% id in 255 aa, and to Agrobacterium tumefaciens 2-deoxy-D-gluconate 3-dehydrogenase KduD or ATU6062 or AGR_PTI_126 SWALL:AAL46298 (EMBL:AE009425) (256 aa) fasta scores: E(): 2.5e-24, 41.44% id in 263 aa; dehydrogenase 2982865..2983644 Bordetella parapertussis 12822 1665464 NP_884992.1 CDS BPP2785 NC_002928.3 2983655 2984455 R Similar to Ralstonia solanacearum probable transcription regulator protein RSC3411 or RS01720 SWALL:Q8XTY4 (EMBL:AL646075) (262 aa) fasta scores: E(): 1.4e-52, 54.75% id in 263 aa, and to Escherichia coli transcriptional regulator KdgR or B1827 SWALL:KDGR_ECOLI (SWALL:P76268) (263 aa) fasta scores: E(): 5.2e-16, 31.27% id in 243 aa; transcriptional regulator complement(2983655..2984455) Bordetella parapertussis 12822 1665465 NP_884993.1 CDS BPP2787 NC_002928.3 2985678 2986730 D Similar to Rhizobium meliloti ABC transporter, periplasmic solute-binding protein Ra0969 or Sma1755 SWALL:Q92YB5 (EMBL:AE007283) (350 aa) fasta scores: E(): 9.2e-12, 29.06% id in 320 aa, and to Rhizobium meliloti spermidine/putrescine-binding periplasmic ABC transporter protein R02500 or Smc01966 SWALL:Q92MV9 (EMBL:AL591790) (359 aa) fasta scores: E(): 1.3e-12, 26.94% id in 334 aa; ABC transporter, periplasmic solute-binding protein 2985678..2986730 Bordetella parapertussis 12822 1665467 NP_884994.1 CDS BPP2788 NC_002928.3 2986741 2987580 D Similar to Escherichia coli putrescine transport system permease PotH or B0856 SWALL:POTH_ECOLI (SWALL:P31135) (317 aa) fasta scores: E(): 6.8e-29, 36.55% id in 238 aa, and to Rhizobium loti ABC transporter, permease Mlr6080 SWALL:Q98AB1 (EMBL:AP003008) (592 aa) fasta scores: E(): 5.8e-31, 38.91% id in 257 aa; ABC transporter permease 2986741..2987580 Bordetella parapertussis 12822 1665468 NP_884995.1 CDS BPP2789 NC_002928.3 2987582 2988376 D Similar to Pseudomonas aeruginosa probable permease of ABC transporter Pa0606 SWALL:Q9I5T2 (EMBL:AE004497) (276 aa) fasta scores: E(): 1.1e-26, 37.34% id in 249 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein Atu4245 or Agr_l_1232 SWALL:AAL45039 (EMBL:AE009353) (266 aa) fasta scores: E(): 4.1e-27, 37.44% id in 243 aa; ABC transporter permease 2987582..2988376 Bordetella parapertussis 12822 1664661 NP_884996.1 CDS dmfA1 NC_002928.3 2988403 2988714 D Similar to Alcaligenes sp. KUFA-1 small subunit of N,N-dimethylformamidase DmfA1 SWALL:Q9LCC1 (EMBL:AB028874) (132 aa) fasta scores: E(): 1.4, 37.28% id in 59 aa; small subunit of N,N-dimethylformamidase 2988403..2988714 Bordetella parapertussis 12822 1664662 NP_884997.1 CDS BPP2793 NC_002928.3 2991003 2991815 D The N-terminal region of this CDS is similar to oxidoreductases. The C-terminal region is similar to biotin carboxylase subunit of acetyl-CoA carboxylase. This hybride CDS resulted from a large deletion event.; hypothetical protein 2991003..2991815 Bordetella parapertussis 12822 1664664 NP_884998.1 CDS madF NC_002928.3 2991836 2992060 D Similar to Malonomonas rubra biotin protein MadF SWALL:O06930 (EMBL:U87980) (69 aa) fasta scores: E(): 0.0032, 31.42% id in 70 aa, and to Bacillus halodurans hypothetical protein Bh1133 SWALL:Q9KDS8 (EMBL:AP001511) (70 aa) fasta scores: E(): 2.4e-06, 42.64% id in 68 aa; biotin protein 2991836..2992060 Bordetella parapertussis 12822 1664665 NP_884999.1 CDS BPP2795 NC_002928.3 2992107 2993318 D Similar to Ralstonia solanacearum hypothetical protein Rsc1197 or Rs05729 SWALL:Q8Y047 (EMBL:AL646063) (405 aa) fasta scores: E(): 5.4e-65, 48.73% id in 394 aa, and to Caulobacter crescentus hypothetical protein Cc3562 SWALL:Q9A2J9 (EMBL:AE006014) (433 aa) fasta scores: E(): 2.4e-70, 46.4% id in 403 aa; hypothetical protein 2992107..2993318 Bordetella parapertussis 12822 1664666 NP_885000.1 CDS BPP2796 NC_002928.3 2993437 2994387 D transposase for IS1002 element; IS1002 transposase 2993437..2994387 Bordetella parapertussis 12822 1664667 NP_885001.1 CDS BPP2797 NC_002928.3 2994589 2994867 D no significant database matches; hypothetical protein 2994589..2994867 Bordetella parapertussis 12822 1665765 NP_885002.1 CDS BPP2798 NC_002928.3 2995102 2995545 D Similar to Vibrio cholerae hypothetical protein Vca1019 SWALL:Q9KKT1 (EMBL:AE004428) (148 aa) fasta scores: E(): 2.1e-06, 33.07% id in 130 aa, and to Mycobacterium leprae integral membrane protein Ml0956 SWALL:Q9CCC8 (EMBL:AL583920) (169 aa) fasta scores: E(): 0.00026, 26.81% id in 138 aa; hypothetical protein 2995102..2995545 Bordetella parapertussis 12822 1665766 NP_885003.1 CDS lysP NC_002928.3 2995701 2997275 D Similar to Escherichia coli lysine-specific permease LysP or CadR or B2156 SWALL:LYSP_ECOLI (SWALL:P25737) (488 aa) fasta scores: E(): 5.9e-141, 72.91% id in 480 aa, and to Yersinia pestis lysine-specific permease LysP or Ypo1309 SWALL:Q8ZGI8 (EMBL:AJ414147) (503 aa) fasta scores: E(): 3.7e-140, 71.07% id in 491 aa; lysine-specific permease 2995701..2997275 Bordetella parapertussis 12822 1665767 NP_885004.1 CDS BPP2800 NC_002928.3 2997315 2998046 R Similar to Synechocystis sp. hypothetical protein Slr0841 SWALL:Q55426 (EMBL:D64003) (291 aa) fasta scores: E(): 0.14, 26.28% id in 175 aa; hypothetical protein complement(2997315..2998046) Bordetella parapertussis 12822 1665768 NP_885005.1 CDS BPP2801 NC_002928.3 2998299 2998523 D Similar to Streptomyces coelicolor hypothetical protein Sco5609 or Sc2e1.26C SWALL:O69897 (EMBL:AL023797) (65 aa) fasta scores: E(): 1.1, 42.55% id in 47 aa; hypothetical protein 2998299..2998523 Bordetella parapertussis 12822 1665769 NP_885006.1 CDS hmgL NC_002928.3 2999539 3000465 R Similar to Rhodospirillum rubrum hydroxymethylglutaryl-CoA lyase HmgL SWALL:P95639 (EMBL:U41280) (303 aa) fasta scores: E(): 3.2e-39, 43.91% id in 296 aa, and to Bacillus halodurans hydroxymethylglutaryl-CoA lyase Bh1134 SWALL:Q9KDS7 (EMBL:AP001511) (303 aa) fasta scores: E(): 2.1e-41, 41.13% id in 299 aa; hydroxymethylglutaryl-CoA lyase complement(2999539..3000465) Bordetella parapertussis 12822 1665771 NP_885007.1 CDS prpR NC_002928.3 3001838 3003766 D Similar to Salmonella typhimurium propionate catabolism operon regulatory protein PrpR or Stm0367 SWALL:PRPR_SALTY (SWALL:P74839) (541 aa) fasta scores: E(): 5.1e-47, 35.59% id in 635 aa, and to Pseudomonas aeruginosa propionate catabolism operon regulator PrpR SWALL:Q9APX8 (EMBL:AF241171) (650 aa) fasta scores: E(): 5.5e-85, 44.66% id in 609 aa; propionate catabolism operon regulatory protein 3001838..3003766 Bordetella parapertussis 12822 1665773 NP_885008.1 CDS marC NC_002928.3 3003890 3004591 D protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 3003890..3004591 Bordetella parapertussis 12822 1667385 NP_885009.1 CDS BPP2807 NC_002928.3 3004780 3006351 R Similar to Pseudomonas aeruginosa hypothetical protein Pa2200 SWALL:Q9I1R7 (EMBL:AE004646) (531 aa) fasta scores: E(): 2.2e-35, 33.33% id in 519 aa, and to Brucella melitensis Rtn protein Bmeii0904 SWALL:Q8YBJ6 (EMBL:AE009724) (530 aa) fasta scores: E(): 3.4e-27, 26.04% id in 503 aa; hypothetical protein complement(3004780..3006351) Bordetella parapertussis 12822 1667386 NP_885010.1 CDS BPP2808 NC_002928.3 3006744 3006878 D Weakly similar to Maize streak virus mouvement protein V1 SWALL:Q9WKC9 (EMBL:AJ012639) (71 aa) fasta scores: E(): 6.1, 39.28% id in 28 aa; hypothetical protein 3006744..3006878 Bordetella parapertussis 12822 1667387 NP_885011.1 CDS BPP2809 NC_002928.3 3006994 3007245 D no significant database matches; hypothetical protein 3006994..3007245 Bordetella parapertussis 12822 1667388 NP_885012.1 CDS BPP2810 NC_002928.3 3007292 3008455 R Similar to Caulobacter crescentus acyl-CoA dehydrogenase Cc2328 SWALL:Q9A5W9 (EMBL:AE005903) (387 aa) fasta scores: E(): 5.1e-94, 60.62% id in 386 aa, and to Brucella melitensis acyl-CoA dehydrogenase Bmeii0492 SWALL:Q8YCN6 (EMBL:AE009685) (395 aa) fasta scores: E(): 4.2e-63, 43.76% id in 393 aa; acyl-CoA dehydrogenase complement(3007292..3008455) Bordetella parapertussis 12822 1667389 NP_885013.1 CDS BPP2811 NC_002928.3 3008492 3009631 R Similar to Pseudomonas aeruginosa hypothetical protein Pa3592 SWALL:Q9HY34 (EMBL:AE004779) (395 aa) fasta scores: E(): 3.7e-91, 62.6% id in 361 aa, and to Rhizobium meliloti conserved membrane-anchored protein Rb0848 or Smb21182 SWALL:Q92V66 (EMBL:AL603645) (394 aa) fasta scores: E(): 6.8e-57, 44.06% id in 379 aa; hypothetical protein complement(3008492..3009631) Bordetella parapertussis 12822 1667390 NP_885014.1 CDS gabD NC_002928.3 3009658 3011091 R Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or B2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 6.9e-54, 37.65% id in 470 aa, and to Rhizobium loti aldehyde dehydrogenase Mlr5236 SWALL:Q98CA3 (EMBL:AP003006) (479 aa) fasta scores: E(): 2.3e-98, 55.1% id in 470 aa; succinate-semialdehyde dehydrogenase complement(3009658..3011091) Bordetella parapertussis 12822 1666283 NP_885015.1 CDS BPP2814 NC_002928.3 3012795 3013769 R Similar to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 3.1e-40, 38.31% id in 321 aa, and to Comamonas testosteroni OrfJ protein SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 4.2e-38, 37.92% id in 327 aa; hypothetical protein complement(3012795..3013769) Bordetella parapertussis 12822 1666285 NP_885016.1 CDS BPP2815 NC_002928.3 3014130 3015095 R ortholog of Bordetella pertussis (BX470248) BP2103; hypothetical protein complement(3014130..3015095) Bordetella parapertussis 12822 1666286 NP_885017.1 CDS BPP2816 NC_002928.3 3015233 3016138 R ortholog of Bordetella pertussis (BX470248) BP2102; lysR family transcriptional regulator complement(3015233..3016138) Bordetella parapertussis 12822 1666287 NP_885018.1 CDS BPP2817 NC_002928.3 3016180 3018483 D ortholog of Bordetella pertussis (BX470248) BP2101; hypothetical protein 3016180..3018483 Bordetella parapertussis 12822 1666288 NP_885019.1 CDS BPP2818 NC_002928.3 3018729 3020213 D ortholog of Bordetella pertussis (BX470248) BP2100; hypothetical protein 3018729..3020213 Bordetella parapertussis 12822 1666289 NP_885020.1 CDS BPP2819 NC_002928.3 3020224 3021420 D ortholog of Bordetella pertussis (BX470248) BP2099; acetyl-CoA acetyltransferase 3020224..3021420 Bordetella parapertussis 12822 1666290 NP_885021.1 CDS BPP2820 NC_002928.3 3021493 3022812 D ortholog of Bordetella pertussis (BX470248) BP2098; acyl-CoA ligase 3021493..3022812 Bordetella parapertussis 12822 1666291 NP_885022.1 CDS BPP2822 NC_002928.3 3023653 3024825 R ortholog of Bordetella pertussis (BX470248) BP2096; fatty-acyl-CoA racemase complement(3023653..3024825) Bordetella parapertussis 12822 1666953 NP_885023.1 CDS BPP2823 NC_002928.3 3024822 3025136 R ortholog of Bordetella pertussis (BX470248) BP2095; ferredoxin complement(3024822..3025136) Bordetella parapertussis 12822 1666954 NP_885024.1 CDS BPP2824 NC_002928.3 3025158 3025880 R ortholog of Bordetella pertussis (BX470248) BP2094; 3-oxoacyl-ACP reductase complement(3025158..3025880) Bordetella parapertussis 12822 1666955 NP_885025.1 CDS BPP2825 NC_002928.3 3025880 3026695 R ortholog of Bordetella pertussis (BX470248) BP2093; enoyl-CoA hydratase/isomerase-like protein complement(3025880..3026695) Bordetella parapertussis 12822 1666956 NP_885026.1 CDS BPP2826 NC_002928.3 3026700 3027227 R ortholog of Bordetella pertussis (BX470248) BP2092; dioxygenase component complement(3026700..3027227) Bordetella parapertussis 12822 1666957 NP_885027.1 CDS BPP2827 NC_002928.3 3027233 3028498 R ortholog of Bordetella pertussis (BX470248) BP2091; dioxygenase hydroxylase component complement(3027233..3028498) Bordetella parapertussis 12822 1666958 NP_885028.1 CDS BPP2828 NC_002928.3 3028850 3029989 D ortholog of Bordetella pertussis (BX470248) BP2090; ABC-transporter substrate-binding protein 3028850..3029989 Bordetella parapertussis 12822 1666959 NP_885029.1 CDS BPP2829 NC_002928.3 3030067 3030939 D ortholog of Bordetella pertussis (BX470248) BP2089; ABC-transporter permease component 3030067..3030939 Bordetella parapertussis 12822 1666960 NP_885030.1 CDS BPP2830 NC_002928.3 3030943 3031899 D ortholog of Bordetella pertussis (BX470248) BP2088+BP1648; ABC-transporter permease component 3030943..3031899 Bordetella parapertussis 12822 1666961 NP_885031.1 CDS livG NC_002928.3 3031896 3032678 D ortholog of Bordetella pertussis (BX470248) BP1649; high-affinity branched-chain amino acid transport ATP-binding protein 3031896..3032678 Bordetella parapertussis 12822 1665082 NP_885032.1 CDS livF NC_002928.3 3032672 3033373 D ortholog of Bordetella pertussis (BX470248) BP1650; high-affinity branched-chain amino acid transport ATP-binding protein 3032672..3033373 Bordetella parapertussis 12822 1665083 NP_885033.1 CDS BPP2833 NC_002928.3 3033612 3034214 D ortholog of Bordetella pertussis (BX470248) BP1651; TetR family transcriptional regulator 3033612..3034214 Bordetella parapertussis 12822 1665084 NP_885034.1 CDS BPP2834 NC_002928.3 3034190 3035419 R ortholog of Bordetella pertussis (BX470248) BP1652; oxidoreductase complement(3034190..3035419) Bordetella parapertussis 12822 1665085 NP_885035.1 CDS BPP2835 NC_002928.3 3035569 3035931 D Similar to Yersinia pestis translational inhibitor protein Ypo0628 SWALL:Q8ZI83 (EMBL:AJ414143) (134 aa) fasta scores: E(): 4e-06, 30.32% id in 122 aa, and to Rhizobium loti hypothetical protein Mll4506 SWALL:Q98DX4 (EMBL:AP003004) (132 aa) fasta scores: E(): 5.6e-05, 38.65% id in 119 aa; translational inhibitor 3035569..3035931 Bordetella parapertussis 12822 1665086 NP_885036.1 CDS BPP2836 NC_002928.3 3035969 3036286 R no significant database matches; hypothetical protein complement(3035969..3036286) Bordetella parapertussis 12822 1665087 NP_885037.1 CDS BPP2837 NC_002928.3 3036520 3036927 R Similar to Bacteriophage P27 hypothetical 14.1 kDa protein SWALL:Q9MBZ3 (EMBL:AJ249351) (125 aa) fasta scores: E(): 9.7e-15, 41.6% id in 125 aa, and to Yersinia pestis phage-related protein Ypo3676 SWALL:Q8ZAV6 (EMBL:AJ414158) (133 aa) fasta scores: E(): 1e-17, 42.52% id in 127 aa; hypothetical protein complement(3036520..3036927) Bordetella parapertussis 12822 1667780 NP_885038.1 CDS BPP2838 NC_002928.3 3037264 3037641 R ortholog of Bordetella pertussis (BX470248) BP2182; hypothetical protein complement(3037264..3037641) Bordetella parapertussis 12822 1667781 NP_885039.1 CDS BPP2839 NC_002928.3 3037638 3037940 R Similar to Anabaena sp. hypothetical protein Asl4856 SWALL:Q8YMS3 (EMBL:AP003597) (85 aa) fasta scores: E(): 4e-20, 62.96% id in 81 aa, and to Rhizobium meliloti hypothetical protein R00767 or Smc00822 SWALL:Q92RS9 (EMBL:AL591784) (98 aa) fasta scores: E(): 3.6e-16, 46.93% id in 98 aa; hypothetical protein complement(3037638..3037940) Bordetella parapertussis 12822 1667782 NP_885040.1 CDS rpoD NC_002928.3 3038171 3040453 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(3038171..3040453) Bordetella parapertussis 12822 1667783 NP_885041.1 CDS dnaG NC_002928.3 3041132 3043183 R ortholog of Bordetella pertussis (BX470248) BP2185; DNA primase complement(3041132..3043183) Bordetella parapertussis 12822 1667784 NP_885042.2 CDS rpsU NC_002928.3 3043203 3043415 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(3043203..3043415) Bordetella parapertussis 12822 1667785 NP_885043.1 CDS BPP2843 NC_002928.3 3043695 3044324 R ortholog of Bordetella pertussis (BX470248) BP2187; transferase complement(3043695..3044324) Bordetella parapertussis 12822 1667786 NP_885044.1 CDS purA NC_002928.3 3044348 3045655 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3044348..3045655) Bordetella parapertussis 12822 1667787 NP_885045.1 CDS hisZ NC_002928.3 3045720 3046877 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(3045720..3046877) Bordetella parapertussis 12822 1667788 NP_885046.1 CDS hflC NC_002928.3 3047061 3047960 R ortholog of Bordetella pertussis (BX470248) BP2190; inner membrane-anchored protein complement(3047061..3047960) Bordetella parapertussis 12822 1668274 NP_885047.1 CDS hflK NC_002928.3 3047979 3049283 R ortholog of Bordetella pertussis (BX470248) BP2191; hypothetical protein complement(3047979..3049283) Bordetella parapertussis 12822 1668275 NP_885048.1 CDS hflX NC_002928.3 3049249 3050286 R ortholog of Bordetella pertussis (BX470248) BP2192; GTP-binding protein complement(3049249..3050286) Bordetella parapertussis 12822 1668276 NP_885049.1 CDS hfq NC_002928.3 3050443 3050679 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(3050443..3050679) Bordetella parapertussis 12822 1668277 NP_885050.1 CDS his1 NC_002928.3 3050817 3051887 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(3050817..3051887) Bordetella parapertussis 12822 1668278 NP_885051.1 CDS engA NC_002928.3 3051891 3053246 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(3051891..3053246) Bordetella parapertussis 12822 1668279 NP_885052.1 CDS BPP2852 NC_002928.3 3053273 3054433 R ortholog of Bordetella pertussis (BX470248) BP2196; quinoprotein complement(3053273..3054433) Bordetella parapertussis 12822 1668280 NP_885053.1 CDS BPP2853 NC_002928.3 3054436 3055074 R ortholog of Bordetella pertussis (BX470248) BP2197; hypothetical protein complement(3054436..3055074) Bordetella parapertussis 12822 1665840 NP_885054.1 CDS hisS NC_002928.3 3055076 3056380 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(3055076..3056380) Bordetella parapertussis 12822 1665841 NP_885055.1 CDS ispG NC_002928.3 3056415 3057716 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(3056415..3057716) Bordetella parapertussis 12822 1665842 NP_885056.1 CDS BPP2857 NC_002928.3 3058226 3059374 R ortholog of Bordetella pertussis (BX470248) BP2201; hypothetical protein complement(3058226..3059374) Bordetella parapertussis 12822 1665844 NP_885057.1 CDS ndk NC_002928.3 3059402 3059827 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(3059402..3059827) Bordetella parapertussis 12822 1665845 NP_885058.1 CDS valS NC_002928.3 3060149 3063031 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3060149..3063031 Bordetella parapertussis 12822 1665846 NP_885059.1 CDS BPP2860 NC_002928.3 3063124 3063879 R ortholog of Bordetella pertussis (BX470248) BP2204; outer membrane (scaffolding) protein complement(3063124..3063879) Bordetella parapertussis 12822 1666029 NP_885060.1 CDS BPP2861 NC_002928.3 3064009 3064680 D ortholog of Bordetella pertussis (BX470248) BP2205; two-component response regulator 3064009..3064680 Bordetella parapertussis 12822 1666030 NP_885061.1 CDS BPP2862 NC_002928.3 3064677 3066026 D ortholog of Bordetella pertussis (BX470248) BP2206; two component sensor kinase 3064677..3066026 Bordetella parapertussis 12822 1666031 NP_885062.1 CDS BPP2863 NC_002928.3 3066068 3066574 D ortholog of Bordetella pertussis (BX470248) BP1843; hypothetical protein 3066068..3066574 Bordetella parapertussis 12822 1666032 NP_885063.1 CDS BPP2864 NC_002928.3 3066600 3067808 D ortholog of Bordetella pertussis (BX470248) BP1842; class-V aminotransferase 3066600..3067808 Bordetella parapertussis 12822 1666033 NP_885064.1 CDS trmD NC_002928.3 3067805 3068578 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(3067805..3068578) Bordetella parapertussis 12822 1666034 NP_885065.1 CDS rimM NC_002928.3 3068578 3069201 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(3068578..3069201) Bordetella parapertussis 12822 1666035 NP_885066.2 CDS rpsP NC_002928.3 3069367 3069627 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(3069367..3069627) Bordetella parapertussis 12822 1666036 NP_885067.1 CDS BPP2869 NC_002928.3 3070581 3070835 R ortholog of Bordetella pertussis (BX470248) BP1837; hypothetical protein complement(3070581..3070835) Bordetella parapertussis 12822 1666038 NP_885068.1 CDS alaS NC_002928.3 3070822 3073446 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(3070822..3073446) Bordetella parapertussis 12822 1667317 NP_885069.1 CDS BPP2871 NC_002928.3 3073518 3074336 R ortholog of Bordetella pertussis (BX470248) BP1835; hypothetical protein complement(3073518..3074336) Bordetella parapertussis 12822 1667318 NP_885070.1 CDS BPP2872 NC_002928.3 3074333 3074938 R ortholog of Bordetella pertussis (BX470248) BP1834; fimbrial protein complement(3074333..3074938) Bordetella parapertussis 12822 1667319 NP_885071.1 CDS BPP2873 NC_002928.3 3074976 3076109 R ortholog of Bordetella pertussis (BX470248) BP1833; general secretion protein complement(3074976..3076109) Bordetella parapertussis 12822 1667320 NP_885072.1 CDS BPP2874 NC_002928.3 3076102 3077817 R ortholog of Bordetella pertussis (BX470248) BP1832; general secretion protein complement(3076102..3077817) Bordetella parapertussis 12822 1667321 NP_885073.1 CDS BPP2875 NC_002928.3 3077814 3078197 R ortholog of Bordetella pertussis (BX470248) BP1831; hypothetical protein complement(3077814..3078197) Bordetella parapertussis 12822 1667322 NP_885074.1 CDS BPP2876 NC_002928.3 3078295 3079569 R ortholog of Bordetella pertussis (BX470248) BP1830; hypothetical protein complement(3078295..3079569) Bordetella parapertussis 12822 1667323 NP_885075.1 CDS BPP2877 NC_002928.3 3079573 3081150 R ortholog of Bordetella pertussis (BX470248) BP1829; lipoprotein complement(3079573..3081150) Bordetella parapertussis 12822 1667324 NP_885076.1 CDS BPP2878 NC_002928.3 3081147 3081908 R ortholog of Bordetella pertussis (BX470248) BP1828; lipoprotein complement(3081147..3081908) Bordetella parapertussis 12822 1666802 NP_885077.1 CDS BPP2879 NC_002928.3 3082086 3083441 R ortholog of Bordetella pertussis (BX470248) BP1827; amidase complement(3082086..3083441) Bordetella parapertussis 12822 1666803 NP_885078.1 CDS BPP2880 NC_002928.3 3083438 3085072 R ortholog of Bordetella pertussis (BX470248) BP1826; ABC transporter ATP-binding protein complement(3083438..3085072) Bordetella parapertussis 12822 1666804 NP_885079.1 CDS BPP2881 NC_002928.3 3085065 3085895 R ortholog of Bordetella pertussis (BX470248) BP1825; inner membrane component of binding-protein-dependent transport system complement(3085065..3085895) Bordetella parapertussis 12822 1666805 NP_885080.1 CDS BPP2882 NC_002928.3 3085913 3086857 R ortholog of Bordetella pertussis (BX470248) BP1824; inner membrane component of binding-protein-dependent transport system complement(3085913..3086857) Bordetella parapertussis 12822 1666756 NP_885081.1 CDS BPP2883 NC_002928.3 3086910 3088484 R ortholog of Bordetella pertussis (BX470248) BP1823; extracellular solute-binding protein complement(3086910..3088484) Bordetella parapertussis 12822 1666757 NP_885082.1 CDS BPP2883A NC_002928.3 3088532 3088882 R ortholog of Bordetella pertussis (BX470248) BP1822; hypothetical protein complement(3088532..3088882) Bordetella parapertussis 12822 1666758 NP_885083.1 CDS BPP2885 NC_002928.3 3090357 3091307 D ortholog of Bordetella pertussis (BX470248) BP1820; LysR family transcriptional regulator 3090357..3091307 Bordetella parapertussis 12822 1666760 NP_885084.1 CDS BPP2886 NC_002928.3 3091539 3092759 R transposase for IS1001 element; transposase complement(3091539..3092759) Bordetella parapertussis 12822 1666761 NP_885085.1 CDS rpoN NC_002928.3 3092986 3094395 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3092986..3094395 Bordetella parapertussis 12822 1666762 NP_885086.1 CDS BPP2888 NC_002928.3 3094424 3094840 R no significant database matches; hypothetical protein complement(3094424..3094840) Bordetella parapertussis 12822 1666763 NP_885087.1 CDS glgA NC_002928.3 3095098 3096630 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 3095098..3096630 Bordetella parapertussis 12822 1666385 NP_885088.1 CDS glgB NC_002928.3 3103180 3105375 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 3103180..3105375 Bordetella parapertussis 12822 1666388 NP_885089.1 CDS glgX NC_002928.3 3105380 >3106879 D ortholog of Bordetella pertussis (BX470248) BP1327; The C-terminal part of this CDS is BPP2895. This CDS lacks a stop codon; N-terminal region of glycosyl hydrolase (partial) 3105380..>3106879 Bordetella parapertussis 12822 1666389 NP_885090.1 CDS BPP2894 NC_002928.3 <3106884 3107564 R The C-terminal part of this CDS is BPP2896. This CDS lacks a stop codon; N-terminal region of alpha amylase (partial) complement(<3106884..3107564) Bordetella parapertussis 12822 1666390 NP_885091.1 CDS glgX' NC_002928.3 3107561 3108175 R This CDS is the C-terminal part of BPP2893.; C-terminal region of a glycosyl hydrolase (partial) complement(3107561..3108175) Bordetella parapertussis 12822 1666391 NP_885092.1 CDS BPP2896 NC_002928.3 3108193 3109251 D ortholog of Bordetella pertussis (BX470248) BP1326; This CDS is the C-terminal part of BPP2894.; C-terminal region of a alpha amylase (partial) 3108193..3109251 Bordetella parapertussis 12822 1666677 NP_885093.1 CDS malQ NC_002928.3 3109248 3111266 D ortholog of Bordetella pertussis (BX470248) BP1324; 4-alpha-glucanotransferase 3109248..3111266 Bordetella parapertussis 12822 1666678 NP_885094.1 CDS BPP2899 NC_002928.3 3113795 3116767 R ortholog of Bordetella pertussis (BX470248) BP1322; two-component sensor histidine kinase complement(3113795..3116767) Bordetella parapertussis 12822 1666680 NP_885095.1 CDS pdxK NC_002928.3 3116868 3117722 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase complement(3116868..3117722) Bordetella parapertussis 12822 1666681 NP_885096.1 CDS BPP2901 NC_002928.3 3117719 3118522 R ortholog of Bordetella pertussis (BX470248) BP1320; hypothetical protein complement(3117719..3118522) Bordetella parapertussis 12822 1666682 NP_885097.1 CDS BPP2902 NC_002928.3 3118582 3119913 D ortholog of Bordetella pertussis (BX470248) BP1319; GntR family transcriptional regulator 3118582..3119913 Bordetella parapertussis 12822 1666683 NP_885098.1 CDS BPP2903 NC_002928.3 3119952 3120458 D ortholog of Bordetella pertussis (BX470248) BP1318; hypothetical protein 3119952..3120458 Bordetella parapertussis 12822 1666684 NP_885099.1 CDS BPP2904 NC_002928.3 3120500 3121054 D ortholog of Bordetella pertussis (BX470248) BP1316; hypothetical protein 3120500..3121054 Bordetella parapertussis 12822 1666685 NP_885100.1 CDS BPP2905 NC_002928.3 3121126 3121551 D ortholog of Bordetella pertussis (BX470248) BP1315; universal stress family protein 3121126..3121551 Bordetella parapertussis 12822 1666686 NP_885101.1 CDS BPP2906 NC_002928.3 3121584 3122471 D ortholog of Bordetella pertussis (BX470248) BP1314; hypothetical protein 3121584..3122471 Bordetella parapertussis 12822 1666687 NP_885102.1 CDS BPP2907 NC_002928.3 3122474 3122797 R ortholog of Bordetella pertussis (BX470248) BP1313; hypothetical protein complement(3122474..3122797) Bordetella parapertussis 12822 1666900 NP_885103.1 CDS BPP2908 NC_002928.3 3122794 3123831 R ortholog of Bordetella pertussis (BX470248) BP1312; metalloprotease complement(3122794..3123831) Bordetella parapertussis 12822 1666901 NP_885104.1 CDS BPP2909 NC_002928.3 3124036 3124440 D ortholog of Bordetella pertussis (BX470248) BP1311; hypothetical protein 3124036..3124440 Bordetella parapertussis 12822 1666902 NP_885105.1 CDS BPP2911 NC_002928.3 3125899 3126438 D ortholog of Bordetella pertussis (BX470248) BP1307; bacterioferritin comigratory protein 3125899..3126438 Bordetella parapertussis 12822 1666904 NP_885106.1 CDS arsC NC_002928.3 3126545 3126889 R ortholog of Bordetella pertussis (BX470248) BP1306; arsenate reductase complement(3126545..3126889) Bordetella parapertussis 12822 1666905 NP_885107.1 CDS BPP2914 NC_002928.3 3128527 3128850 R ortholog of Bordetella pertussis (BX470248) BP1304; hypothetical protein complement(3128527..3128850) Bordetella parapertussis 12822 1666907 NP_885108.1 CDS BPP2915 NC_002928.3 3129026 3130618 D ortholog of Bordetella pertussis (BX470248) BP1303; hypothetical protein 3129026..3130618 Bordetella parapertussis 12822 1666908 NP_885109.1 CDS BPP2916 NC_002928.3 3130642 3131820 D ortholog of Bordetella pertussis (BX470248) BP1302; hypothetical protein 3130642..3131820 Bordetella parapertussis 12822 1666909 NP_885110.1 CDS BPP2917 NC_002928.3 3131903 3132403 D ortholog of Bordetella pertussis (BX470248) BP1301; glutathione peroxidase 3131903..3132403 Bordetella parapertussis 12822 1666910 NP_885111.1 CDS BPP2918 NC_002928.3 3132429 3133214 D ortholog of Bordetella pertussis (BX470248) BP1300; glutathione transferase 3132429..3133214 Bordetella parapertussis 12822 1666911 NP_885112.1 CDS BPP2919 NC_002928.3 3133226 3133690 D ortholog of Bordetella pertussis (BX470248) BP1299; acetyltransferase 3133226..3133690 Bordetella parapertussis 12822 1668197 NP_885113.1 CDS BPP2920 NC_002928.3 3133687 3133980 D ortholog of Bordetella pertussis (BX470248) BP1298; hypothetical protein 3133687..3133980 Bordetella parapertussis 12822 1668198 NP_885114.1 CDS BPP2921 NC_002928.3 3133977 3134753 D ortholog of Bordetella pertussis (BX470248) BP1297; lipoate-protein ligase A 3133977..3134753 Bordetella parapertussis 12822 1668199 NP_885115.1 CDS BPP2922 NC_002928.3 3134782 3135609 D ortholog of Bordetella pertussis (BX470248) BP1296; lipoprotein 3134782..3135609 Bordetella parapertussis 12822 1668200 NP_885116.1 CDS BPP2923 NC_002928.3 3135690 3136205 D ortholog of Bordetella pertussis (BX470248) BP1295; hypothetical protein 3135690..3136205 Bordetella parapertussis 12822 1668201 NP_885117.2 CDS psd NC_002928.3 3136332 3137225 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 3136332..3137225 Bordetella parapertussis 12822 1668202 NP_885118.1 CDS lldD NC_002928.3 3137310 3138518 D ortholog of Bordetella pertussis (BX470248) BP1293; L-lactate dehydrogenase 3137310..3138518 Bordetella parapertussis 12822 1668203 NP_885119.1 CDS BPP2926 NC_002928.3 3138531 3139376 R ortholog of Bordetella pertussis (BX470248) BP1292; hypothetical protein complement(3138531..3139376) Bordetella parapertussis 12822 1668204 NP_885120.1 CDS BPP2927 NC_002928.3 3139480 3140001 R ortholog of Bordetella pertussis (BX470248) BP1291; hypothetical protein complement(3139480..3140001) Bordetella parapertussis 12822 1668205 NP_885121.1 CDS BPP2928 NC_002928.3 3139998 3140495 R ortholog of Bordetella pertussis (BX470248) BP1290; hypothetical protein complement(3139998..3140495) Bordetella parapertussis 12822 1667512 NP_885122.1 CDS BPP2929 NC_002928.3 3140644 3141021 D ortholog of Bordetella pertussis (BX470248) BP1289; hypothetical protein 3140644..3141021 Bordetella parapertussis 12822 1667513 NP_885123.1 CDS BPP2931 NC_002928.3 3141378 3142598 D transposase for IS1001 element; transposase 3141378..3142598 Bordetella parapertussis 12822 1667515 NP_885124.1 CDS BPP2933 NC_002928.3 3143230 3143868 R ortholog of Bordetella pertussis (BX470248) BP1270; glutathione S-transferase complement(3143230..3143868) Bordetella parapertussis 12822 1667516 NP_885125.1 CDS BPP2934 NC_002928.3 3143865 3145037 R ortholog of Bordetella pertussis (BX470248) BP1271; hypothetical protein complement(3143865..3145037) Bordetella parapertussis 12822 1667517 NP_885126.1 CDS gst NC_002928.3 3145162 3145776 D Similar to Escherichia coli glutathione S-transferase Gst or B1635 or Z2647 or Ecs2344 SWALL:GT_ECOLI (SWALL:P39100) (201 aa) fasta scores: E(): 1.3e-21, 38.16% id in 207 aa, and to Xylella fastidiosa glutathione S-transferase Xf1210 SWALL:Q9PE18 (EMBL:AE003955) (205 aa) fasta scores: E(): 3.3e-37, 51.96% id in 204 aa; glutathione S-transferase 3145162..3145776 Bordetella parapertussis 12822 1667518 NP_885127.1 CDS BPP2936 NC_002928.3 3145893 3146636 D ortholog of Bordetella pertussis (BX470248) BP1272; aspartate racemase 3145893..3146636 Bordetella parapertussis 12822 1668074 NP_885128.1 CDS livF NC_002928.3 3146788 3147426 R ortholog of Bordetella pertussis (BX470248) BP1273; high-affinity branched-chain amino acid transport ATP-binding protein complement(3146788..3147426) Bordetella parapertussis 12822 1668075 NP_885129.1 CDS livG NC_002928.3 3147490 3148257 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit complement(3147490..3148257) Bordetella parapertussis 12822 1668076 NP_885130.1 CDS livM NC_002928.3 3148254 3149492 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit complement(3148254..3149492) Bordetella parapertussis 12822 1668077 NP_885131.1 CDS livH NC_002928.3 3149492 3150418 R ortholog of Bordetella pertussis (BX470248) BP1276; high-affinity branched-chain amino acid transport system permease complement(3149492..3150418) Bordetella parapertussis 12822 1668078 NP_885132.1 CDS livJ NC_002928.3 3150521 3151636 R ortholog of Bordetella pertussis (BX470248) BP1277; leu/Ile/val-binding protein precursor complement(3150521..3151636) Bordetella parapertussis 12822 1668079 NP_885133.1 CDS BPP2942 NC_002928.3 3151907 3152488 R ortholog of Bordetella pertussis (BX470248) BP1279; hypothetical protein complement(3151907..3152488) Bordetella parapertussis 12822 1668009 NP_885134.1 CDS proC NC_002928.3 3152485 3153318 R ortholog of Bordetella pertussis (BX470248) BP1280; pyrroline-5-carboxylate reductase complement(3152485..3153318) Bordetella parapertussis 12822 1668010 NP_885135.1 CDS ugpB NC_002928.3 3153502 3154842 D ortholog of Bordetella pertussis (BX470248) BP1281; glycerol-3-phosphate-binding periplasmic protein precursor 3153502..3154842 Bordetella parapertussis 12822 1668011 NP_885136.1 CDS ugpA NC_002928.3 3155019 3155900 D ortholog of Bordetella pertussis (BX470248) BP1282; sn-glycerol-3-phosphate ABC transporter permease 3155019..3155900 Bordetella parapertussis 12822 1668012 NP_885137.1 CDS ugpE NC_002928.3 3155920 3156771 D ortholog of Bordetella pertussis (BX470248) BP1283; sn-glycerol-3-phosphate transport system permease 3155920..3156771 Bordetella parapertussis 12822 1668013 NP_885138.1 CDS ugpC NC_002928.3 3156820 3157908 D part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit 3156820..3157908 Bordetella parapertussis 12822 1668014 NP_885139.1 CDS livJ NC_002928.3 3157996 3159123 R ortholog of Bordetella pertussis (BX470248) BP1285; leu/Ile/val-binding protein precursor complement(3157996..3159123) Bordetella parapertussis 12822 1668015 NP_885140.1 CDS BPP2949 NC_002928.3 3159358 3159969 D ortholog of Bordetella pertussis (BX470248) BP1286; hypothetical protein 3159358..3159969 Bordetella parapertussis 12822 1668296 NP_885141.1 CDS wcbR NC_002928.3 3160518 3168101 D Similar to Burkholderia mallei type I polyketide synthase WcbR SWALL:Q9AI30 (EMBL:AF285636) (2546 aa) fasta scores: E(): 0, 44.23% id in 2600 aa, and to Rhizobium meliloti fatty acid synthase transmembrane protein RkpA or R00577 or smc02273 SWALL:Q92S51 (EMBL:AL591784) (2504 aa) fasta scores: E(): 2.4e-112, 35.97% id in 2527 aa; type I polyketide synthase 3160518..3168101 Bordetella parapertussis 12822 1668297 NP_885142.1 CDS wcbQ NC_002928.3 3169293 3170849 R ortholog of Bordetella pertussis (BX470248) BP1654; capsular polysaccharide biosynthesis protein complement(3169293..3170849) Bordetella parapertussis 12822 1668299 NP_885143.1 CDS wcbP NC_002928.3 3170842 3171615 R ortholog of Bordetella pertussis (BX470248) BP1655; oxidoreductase complement(3170842..3171615) Bordetella parapertussis 12822 1668300 NP_885144.1 CDS wcbO NC_002928.3 3171612 3172832 R ortholog of Bordetella pertussis (BX470248) BP1632; capsular polysaccharide export protein complement(3171612..3172832) Bordetella parapertussis 12822 1667572 NP_885145.1 CDS wcbA NC_002928.3 3172846 3174723 R ortholog of Bordetella pertussis (BX470248) BP1631; capsular polysaccharide export protein complement(3172846..3174723) Bordetella parapertussis 12822 1667573 NP_885146.1 CDS wbpP NC_002928.3 3174847 3175872 R ortholog of Bordetella pertussis (BX470248) BP1630; capsular polysaccharide biosynthesis protein complement(3174847..3175872) Bordetella parapertussis 12822 1667574 NP_885147.1 CDS wbpO NC_002928.3 3175884 3177173 R ortholog of Bordetella pertussis (BX470248) BP1629; capsular polysaccharide biosynthesis protein complement(3175884..3177173) Bordetella parapertussis 12822 1667575 NP_885148.1 CDS wza NC_002928.3 3177196 3178293 R ortholog of Bordetella pertussis (BX470248) BP1628; capsular polysaccharide export protein complement(3177196..3178293) Bordetella parapertussis 12822 1667576 NP_885149.1 CDS vipC NC_002928.3 3178290 3179180 R ortholog of Bordetella pertussis (BX470248) BP1627; capsular polysaccharide biosynthesis protein complement(3178290..3179180) Bordetella parapertussis 12822 1667577 NP_885150.1 CDS wbpT NC_002928.3 3179177 3181261 R ortholog of Bordetella pertussis (BX470248) BP1626; capsular polysaccharide biosynthesis protein complement(3179177..3181261) Bordetella parapertussis 12822 1667578 NP_885151.1 CDS wcbD NC_002928.3 3181293 3182462 R ortholog of Bordetella pertussis (BX470248) BP1625; capsule polysaccharide export inner-membrane protein complement(3181293..3182462) Bordetella parapertussis 12822 1667579 NP_885152.1 CDS kpsT NC_002928.3 3182504 3183241 R ortholog of Bordetella pertussis (BX470248) BP1624; polysialic acid transport ATP-binding protein complement(3182504..3183241) Bordetella parapertussis 12822 1667580 NP_885153.1 CDS kpsM NC_002928.3 3183238 3184008 R ortholog of Bordetella pertussis (BX470248) BP1623; polysialic acid transport protein complement(3183238..3184008) Bordetella parapertussis 12822 1667581 NP_885154.1 CDS BPP2965 NC_002928.3 3184333 3185646 D ortholog of Bordetella pertussis (BX470248) BP1620; glycosyl transferase family protein 3184333..3185646 Bordetella parapertussis 12822 1665533 NP_885155.1 CDS BPP2966 NC_002928.3 3185673 3187757 D ortholog of Bordetella pertussis (BX470248) BP1619; hypothetical protein 3185673..3187757 Bordetella parapertussis 12822 1665534 NP_885156.1 CDS dps NC_002928.3 3190202 3190762 R ortholog of Bordetella pertussis (BX470248) BP1616; DNA-binding protein complement(3190202..3190762) Bordetella parapertussis 12822 1665536 NP_885157.1 CDS BPP2970 NC_002928.3 3190801 3192315 R ortholog of Bordetella pertussis (BX470248) BP1615; aldehyde dehydrogenase complement(3190801..3192315) Bordetella parapertussis 12822 1665537 NP_885158.1 CDS BPP2971 NC_002928.3 3192453 3193340 D ortholog of Bordetella pertussis (BX470248) BP1614; LysR family transcriptional regulator 3192453..3193340 Bordetella parapertussis 12822 1665538 NP_885159.1 CDS BPP2972 NC_002928.3 3193355 3194308 R ortholog of Bordetella pertussis (BX470248) BP1613; LysR family transcriptional regulator complement(3193355..3194308) Bordetella parapertussis 12822 1665539 NP_885160.1 CDS recG NC_002928.3 3194360 3196351 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(3194360..3196351) Bordetella parapertussis 12822 1665540 NP_885161.1 CDS BPP2974 NC_002928.3 3196466 3196852 R ortholog of Bordetella pertussis (BX470248) BP1611; translational inhibitor complement(3196466..3196852) Bordetella parapertussis 12822 1664780 NP_885162.1 CDS BPP2975 NC_002928.3 3197029 3199842 R ortholog of Bordetella pertussis (BX470248) BP1610; autotransporter complement(3197029..3199842) Bordetella parapertussis 12822 1664781 NP_885163.1 CDS dkgB NC_002928.3 3200006 3200809 R catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B complement(3200006..3200809) Bordetella parapertussis 12822 1664782 NP_885164.1 CDS BPP2977 NC_002928.3 3200881 3202044 R ortholog of Bordetella pertussis (BX470248) BP1608; hypothetical protein complement(3200881..3202044) Bordetella parapertussis 12822 1664783 NP_885165.1 CDS BPP2978 NC_002928.3 3202134 3203048 D ortholog of Bordetella pertussis (BX470248) BP1607; LysR family transcriptional regulator 3202134..3203048 Bordetella parapertussis 12822 1664784 NP_885166.1 CDS fpr NC_002928.3 3203113 3203889 R ortholog of Bordetella pertussis (BX470248) BP1606; ferredoxin--NADP reductase complement(3203113..3203889) Bordetella parapertussis 12822 1664785 NP_885167.1 CDS BPP2980 NC_002928.3 3204211 3205260 D ortholog of Bordetella pertussis (BX470248) BP1605; iron binding protein 3204211..3205260 Bordetella parapertussis 12822 1664786 NP_885168.1 CDS BPP2981 NC_002928.3 3205384 3207054 D ortholog of Bordetella pertussis (BX470248) BP1604; inner membrane component of binding-protein-dependent transport system 3205384..3207054 Bordetella parapertussis 12822 1664787 NP_885169.1 CDS BPP2982 NC_002928.3 3207059 3207835 D ortholog of Bordetella pertussis (BX470248) BP1603; ABC transporter ATP-binding protein 3207059..3207835 Bordetella parapertussis 12822 1664808 NP_885170.1 CDS BPP2983 NC_002928.3 3207855 3208760 R ortholog of Bordetella pertussis (BX470248) BP1601; hypothetical protein complement(3207855..3208760) Bordetella parapertussis 12822 1664809 NP_885171.1 CDS BPP2984 NC_002928.3 3208838 3209536 R ortholog of Bordetella pertussis (BX470248) BP1600; hypothetical protein complement(3208838..3209536) Bordetella parapertussis 12822 1664810 NP_885172.1 CDS BPP2985 NC_002928.3 3209696 3210640 D ortholog of Bordetella pertussis (BX470248) BP1599; LysR family transcriptional regulator 3209696..3210640 Bordetella parapertussis 12822 1664811 NP_885173.1 CDS glnG NC_002928.3 3210650 3212140 R ortholog of Bordetella pertussis (BX470248) BP1598; nitrogen regulation protein NR(I) complement(3210650..3212140) Bordetella parapertussis 12822 1664812 NP_885174.1 CDS glnL NC_002928.3 3212137 3213213 R ortholog of Bordetella pertussis (BX470248) BP1597; nitrogen regulation protein NR(II) complement(3212137..3213213) Bordetella parapertussis 12822 1666499 NP_885175.1 CDS glnA NC_002928.3 3213268 3214680 R ortholog of Bordetella pertussis (BX470248) BP1596; glutamine synthetase complement(3213268..3214680) Bordetella parapertussis 12822 1666500 NP_885176.1 CDS BPP2989 NC_002928.3 3214866 3216086 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(3214866..3216086) Bordetella parapertussis 12822 1666501 NP_885177.1 CDS BPP2990 NC_002928.3 3216108 3216809 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(3216108..3216809) Bordetella parapertussis 12822 1666502 NP_885178.1 CDS BPP2991 NC_002928.3 3216876 3218678 D ortholog of Bordetella pertussis (BX470248) BP1592; hypothetical protein 3216876..3218678 Bordetella parapertussis 12822 1666503 NP_885179.1 CDS BPP2992 NC_002928.3 3218556 3220247 R ortholog of Bordetella pertussis (BX470248) BP1591; methyl-accepting chemotaxis protein complement(3218556..3220247) Bordetella parapertussis 12822 1666504 NP_885180.1 CDS BPP2993 NC_002928.3 3220330 3221235 R ortholog of Bordetella pertussis (BX470248) BP1590; transcriptional regulator complement(3220330..3221235) Bordetella parapertussis 12822 1667475 NP_885181.1 CDS BPP2994 NC_002928.3 3221418 3222794 D ortholog of Bordetella pertussis (BX470248) BP1589; hypothetical protein 3221418..3222794 Bordetella parapertussis 12822 1667476 NP_885182.1 CDS rph NC_002928.3 3222927 3223679 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(3222927..3223679) Bordetella parapertussis 12822 1667477 NP_885183.1 CDS BPP2997 NC_002928.3 3225014 3225169 D ortholog of Bordetella pertussis (BX470248) BP1586; hypothetical protein 3225014..3225169 Bordetella parapertussis 12822 1667479 NP_885184.1 CDS BPP2998 NC_002928.3 3225182 3225310 D ortholog of Bordetella pertussis (BX470248) BP1585; hypothetical protein 3225182..3225310 Bordetella parapertussis 12822 1667480 NP_885185.1 CDS BPP2999 NC_002928.3 3225307 3225591 D ortholog of Bordetella pertussis (BX470248) BP1584; DNA-binding protein 3225307..3225591 Bordetella parapertussis 12822 1667481 NP_885186.1 CDS amn NC_002928.3 3225650 3227140 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(3225650..3227140) Bordetella parapertussis 12822 1667482 NP_885187.1 CDS BPP3001 NC_002928.3 3227343 3227984 D ortholog of Bordetella pertussis (BX470248) BP1582; hypothetical protein 3227343..3227984 Bordetella parapertussis 12822 1667483 NP_885188.1 CDS BPP3002 NC_002928.3 3227989 3228759 R ortholog of Bordetella pertussis (BX470248) BP1581; oxidoreductase complement(3227989..3228759) Bordetella parapertussis 12822 1667484 NP_885189.1 CDS BPP3003 NC_002928.3 3228997 3229710 D ortholog of Bordetella pertussis (BX470248) BP1580; cytochrome C 3228997..3229710 Bordetella parapertussis 12822 1667485 NP_885190.1 CDS BPP3004 NC_002928.3 3229707 3230624 D ortholog of Bordetella pertussis (BX470248) BP1579; cytochrome C 3229707..3230624 Bordetella parapertussis 12822 1666057 NP_885191.1 CDS gmk NC_002928.3 3230745 3231392 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 3230745..3231392 Bordetella parapertussis 12822 1666058 NP_885192.1 CDS rpoZ NC_002928.3 3231434 3231637 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 3231434..3231637 Bordetella parapertussis 12822 1666059 NP_885193.1 CDS spoT NC_002928.3 3231662 3233941 D ortholog of Bordetella pertussis (BX470248) BP1576; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 3231662..3233941 Bordetella parapertussis 12822 1666060 NP_885194.1 CDS glnQ NC_002928.3 3233954 3234682 R similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein complement(3233954..3234682) Bordetella parapertussis 12822 1666061 NP_885195.1 CDS glnP NC_002928.3 3234679 3235338 R similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease complement(3234679..3235338) Bordetella parapertussis 12822 1666062 NP_885196.1 CDS glnH NC_002928.3 3235407 3236159 R similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein complement(3235407..3236159) Bordetella parapertussis 12822 1666063 NP_885197.1 CDS BPP3011 NC_002928.3 3236466 3237380 D ortholog of Bordetella pertussis (BX470248) BP1896; hypothetical protein 3236466..3237380 Bordetella parapertussis 12822 1667921 NP_885198.1 CDS oplaH NC_002928.3 3237394 3241017 R ortholog of Bordetella pertussis (BX470248) BP1895; 5-oxoprolinase complement(3237394..3241017) Bordetella parapertussis 12822 1667922 NP_885199.1 CDS BPP3013 NC_002928.3 3241096 3241608 R ortholog of Bordetella pertussis (BX470248) BP1894; hypothetical protein complement(3241096..3241608) Bordetella parapertussis 12822 1667923 NP_885200.1 CDS BPP3014 NC_002928.3 3241752 3242684 D ortholog of Bordetella pertussis (BX470248) BP1893; LysR family transcriptional regulator 3241752..3242684 Bordetella parapertussis 12822 1667924 NP_885201.1 CDS BPP3015 NC_002928.3 3242848 3243552 D ortholog of Bordetella pertussis (BX470248) BP1892; hypothetical protein 3242848..3243552 Bordetella parapertussis 12822 1667925 NP_885202.1 CDS BPP3016 NC_002928.3 3243573 3244538 D ortholog of Bordetella pertussis (BX470248) BP1891; hypothetical protein 3243573..3244538 Bordetella parapertussis 12822 1667926 NP_885203.1 CDS BPP3017 NC_002928.3 3244552 3245043 D ortholog of Bordetella pertussis (BX470248) BP1890; hypothetical protein 3244552..3245043 Bordetella parapertussis 12822 1667927 NP_885204.1 CDS BPP3018 NC_002928.3 3245036 3246334 D ortholog of Bordetella pertussis (BX470248) BP1888; hypothetical protein 3245036..3246334 Bordetella parapertussis 12822 1667928 NP_885205.1 CDS BPP3019 NC_002928.3 3246487 3247572 D ortholog of Bordetella pertussis (BX470248) BP1887; hypothetical protein 3246487..3247572 Bordetella parapertussis 12822 1664914 NP_885206.1 CDS BPP3020 NC_002928.3 3247579 3248079 D ortholog of Bordetella pertussis (BX470248) BP1886; hypothetical protein 3247579..3248079 Bordetella parapertussis 12822 1664915 NP_885207.1 CDS BPP3021 NC_002928.3 3248209 3249369 D ortholog of Bordetella pertussis (BX470248) BP1885; hypothetical protein 3248209..3249369 Bordetella parapertussis 12822 1664916 NP_885208.1 CDS fhaC NC_002928.3 3249395 3251146 R ortholog of Bordetella pertussis (BX470248) BP1884; hemolysin activator-like protein complement(3249395..3251146) Bordetella parapertussis 12822 1664917 NP_885209.1 CDS fimD NC_002928.3 3251139 3252236 R ortholog of Bordetella pertussis (BX470248) BP1883; fimbrial adhesin complement(3251139..3252236) Bordetella parapertussis 12822 1664918 NP_885210.1 CDS fimC NC_002928.3 3252250 3254871 R ortholog of Bordetella pertussis (BX470248) BP1882; outer membrane usher protein precursor complement(3252250..3254871) Bordetella parapertussis 12822 1664919 NP_885211.1 CDS fimB NC_002928.3 3254934 3255758 R ortholog of Bordetella pertussis (BX470248) BP1881; chaperone protein complement(3254934..3255758) Bordetella parapertussis 12822 1664920 NP_885212.1 CDS fhaB NC_002928.3 3256859 3267637 R ortholog of Bordetella pertussis (BX470248) BP1879; filamentous hemagglutinin/adhesin complement(3256859..3267637) Bordetella parapertussis 12822 1667274 NP_885213.1 CDS bvgA NC_002928.3 3267991 3268692 D ortholog of Bordetella pertussis (BX470248) BP1878; virulence factors transcription regulator 3267991..3268692 Bordetella parapertussis 12822 1667275 NP_885214.1 CDS bvgS NC_002928.3 3268701 3272417 D ortholog of Bordetella pertussis (BX470248) BP1877; virulence sensor protein 3268701..3272417 Bordetella parapertussis 12822 1667276 NP_885215.1 CDS bvgR NC_002928.3 3272464 3273339 R ortholog of Bordetella pertussis (BX470248) BP1876; regulatory protein BvgR complement(3272464..3273339) Bordetella parapertussis 12822 1667277 NP_885216.1 CDS BPP3031 NC_002928.3 3273473 3274306 R ortholog of Bordetella pertussis (BX470248) BP1875; hypothetical protein complement(3273473..3274306) Bordetella parapertussis 12822 1667278 NP_885217.1 CDS BPP3032 NC_002928.3 3274325 3275674 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(3274325..3275674) Bordetella parapertussis 12822 1667279 NP_885218.1 CDS BPP3037 NC_002928.3 3277757 3278377 R Weakly similar to others eg. Rhizobium loti hypothetical protein Mll5171 SWALL:Q98CF5 (EMBL:AP003005) (194 aa) fasta scores: E(): 1.6e-06, 24.6% id in 191 aa; hypothetical protein complement(3277757..3278377) Bordetella parapertussis 12822 1665288 NP_885219.1 CDS BPP3040 NC_002928.3 3279881 3280789 R Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2115 SWALL:Q9I200 (EMBL:AE004639) (317 aa) fasta scores: E(): 1.6e-33, 35.78% id in 299 aa, and to Alcaligenes eutrophus rubisco operon transcriptional regulator CfxR SWALL:CFXR_ALCEU (SWALL:P42722) (317 aa) fasta scores: E(): 3.1e-13, 28.52% id in 305 aa; LysR family transcriptional regulator complement(3279881..3280789) Bordetella parapertussis 12822 1665290 NP_885220.1 CDS BPP3041 NC_002928.3 3280893 3281852 D Similar to Pseudomonas aeruginosa hypothetical protein Pa0239 SWALL:Q9I6P9 (EMBL:AE004462) (292 aa) fasta scores: E(): 2.8e-36, 39% id in 300 aa, and to Ralstonia solanacearum probable transmembrane protein Rsp0133 or rs02987 SWALL:Q8XTH7 (EMBL:AL646076) (316 aa) fasta scores: E(): 4.8e-29, 35.42% id in 319 aa; integral membrane protein 3280893..3281852 Bordetella parapertussis 12822 1665291 NP_885221.1 CDS BPP3042 NC_002928.3 3281856 3282527 R ortholog of Bordetella pertussis (BX470248) BP1734; ABC transporter ATP-binding protein complement(3281856..3282527) Bordetella parapertussis 12822 1665353 NP_885222.1 CDS tesA NC_002928.3 3282586 3283194 D ortholog of Bordetella pertussis (BX470248) BP1733; acyl-CoA thioesterase 3282586..3283194 Bordetella parapertussis 12822 1665354 NP_885223.1 CDS ppiD NC_002928.3 3283176 3285191 R ortholog of Bordetella pertussis (BX470248) BP1732; peptidyl-prolyl cis-trans isomerase D complement(3283176..3285191) Bordetella parapertussis 12822 1665355 NP_885224.1 CDS ugpQ NC_002928.3 3285374 3286123 D hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; glycerophosphodiester phosphodiesterase 3285374..3286123 Bordetella parapertussis 12822 1665356 NP_885225.1 CDS BPP3046 NC_002928.3 3286136 3286999 D ortholog of Bordetella pertussis (BX470248) BP1730; hypothetical protein 3286136..3286999 Bordetella parapertussis 12822 1665357 NP_885226.1 CDS BPP3047 NC_002928.3 3287003 3288418 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(3287003..3288418) Bordetella parapertussis 12822 1665358 NP_885227.1 CDS BPP3048 NC_002928.3 3288552 3289280 R ortholog of Bordetella pertussis (BX470248) BP1728; glutaredoxin complement(3288552..3289280) Bordetella parapertussis 12822 1665359 NP_885228.1 CDS BPP3049 NC_002928.3 3289419 3289619 R ortholog of Bordetella pertussis (BX470248) BP1727; hypothetical protein complement(3289419..3289619) Bordetella parapertussis 12822 1665360 NP_885229.1 CDS BPP3050 NC_002928.3 3289795 3290193 D ortholog of Bordetella pertussis (BX470248) BP1726; MerR family transcriptional regulator 3289795..3290193 Bordetella parapertussis 12822 1665361 NP_885230.1 CDS rumA NC_002928.3 3290217 3291671 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(3290217..3291671) Bordetella parapertussis 12822 1665986 NP_885231.1 CDS BPP3052 NC_002928.3 3291736 3292485 R ortholog of Bordetella pertussis (BX470248) BP1724; hypothetical protein complement(3291736..3292485) Bordetella parapertussis 12822 1665987 NP_885232.1 CDS BPP3053 NC_002928.3 3292774 3293463 R ortholog of Bordetella pertussis (BX470248) BP1723; hypothetical protein complement(3292774..3293463) Bordetella parapertussis 12822 1665988 NP_885233.1 CDS BPP3054 NC_002928.3 3293490 3294269 R ortholog of Bordetella pertussis (BX470248) BP1722; hypothetical protein complement(3293490..3294269) Bordetella parapertussis 12822 1665989 NP_885234.1 CDS BPP3055 NC_002928.3 3294266 3295150 R ortholog of Bordetella pertussis (BX470248) BP1721; peptidase complement(3294266..3295150) Bordetella parapertussis 12822 1665990 NP_885235.1 CDS pcm NC_002928.3 3295168 3295947 R ortholog of Bordetella pertussis (BX470248) BP1720; protein-L-isoaspartate O-methyltransferase complement(3295168..3295947) Bordetella parapertussis 12822 1665991 NP_885236.1 CDS surE NC_002928.3 3295932 3296690 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(3295932..3296690) Bordetella parapertussis 12822 1665992 NP_885237.1 CDS BPP3058 NC_002928.3 3296816 3297463 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 3296816..3297463 Bordetella parapertussis 12822 1665993 NP_885238.1 CDS gcp NC_002928.3 3297508 3298548 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(3297508..3298548) Bordetella parapertussis 12822 1665994 NP_885239.1 CDS BPP3060 NC_002928.3 3298683 3299975 D ortholog of Bordetella pertussis (BX470248) BP1715; permease 3298683..3299975 Bordetella parapertussis 12822 1665995 NP_885240.1 CDS BPP3061 NC_002928.3 3300181 3301206 D ortholog of Bordetella pertussis (BX470248) BP1714; hypothetical protein 3300181..3301206 Bordetella parapertussis 12822 1665194 NP_885241.1 CDS trxC NC_002928.3 3301342 3301725 D ortholog of Bordetella pertussis (BX470248) BP1713; thioredoxin 2 3301342..3301725 Bordetella parapertussis 12822 1665195 NP_885242.1 CDS BPP3063 NC_002928.3 3301744 3302331 R ortholog of Bordetella pertussis (BX470248) BP1712; hypothetical protein complement(3301744..3302331) Bordetella parapertussis 12822 1665196 NP_885243.1 CDS BPP3064 NC_002928.3 3302369 3303208 R ortholog of Bordetella pertussis (BX470248) BP1710; substrate-binding protein complement(3302369..3303208) Bordetella parapertussis 12822 1665197 NP_885244.1 CDS BPP3065 NC_002928.3 3303236 3304009 R ortholog of Bordetella pertussis (BX470248) BP1709; permease of ABC transporter complement(3303236..3304009) Bordetella parapertussis 12822 1665198 NP_885245.1 CDS BPP3066 NC_002928.3 3304006 3305004 R ortholog of Bordetella pertussis (BX470248) BP1708; hypothetical protein complement(3304006..3305004) Bordetella parapertussis 12822 1665199 NP_885246.1 CDS BPP3067 NC_002928.3 3305089 3305892 R ortholog of Bordetella pertussis (BX470248) BP1707; ABC transporter ATP-binding protein complement(3305089..3305892) Bordetella parapertussis 12822 1665200 NP_885247.1 CDS BPP3068 NC_002928.3 3306020 3307687 R ortholog of Bordetella pertussis (BX470248) BP1706; ABC transporter ATP-binding protein complement(3306020..3307687) Bordetella parapertussis 12822 1665201 NP_885248.1 CDS BPP3069 NC_002928.3 3308004 3309128 D ortholog of Bordetella pertussis (BX470248) BP1705; hypothetical protein 3308004..3309128 Bordetella parapertussis 12822 1668183 NP_885249.1 CDS BPP3070 NC_002928.3 3309255 3309878 D ortholog of Bordetella pertussis (BX470248) BP1704; hypothetical protein 3309255..3309878 Bordetella parapertussis 12822 1668184 NP_885250.1 CDS BPP3071 NC_002928.3 3309875 3311785 D ortholog of Bordetella pertussis (BX470248) BP1703; hypothetical protein 3309875..3311785 Bordetella parapertussis 12822 1668185 NP_885251.1 CDS BPP3072 NC_002928.3 3311834 3312628 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3311834..3312628 Bordetella parapertussis 12822 1668186 NP_885252.1 CDS ldcA NC_002928.3 3312641 3313642 R ortholog of Bordetella pertussis (BX470248) BP1701; muramoyltetrapeptide carboxypeptidase complement(3312641..3313642) Bordetella parapertussis 12822 1668187 NP_885253.1 CDS cumB NC_002928.3 3313639 3314145 R ortholog of Bordetella pertussis (BX470248) BP1700; zinc-binding hydrolase complement(3313639..3314145) Bordetella parapertussis 12822 1668188 NP_885254.1 CDS BPP3075 NC_002928.3 3314138 3314986 R ortholog of Bordetella pertussis (BX470248) BP1699; hypothetical protein complement(3314138..3314986) Bordetella parapertussis 12822 1668146 NP_885255.1 CDS BPP3076 NC_002928.3 3315084 3315638 R ortholog of Bordetella pertussis (BX470248) BP1698; hypothetical protein complement(3315084..3315638) Bordetella parapertussis 12822 1668147 NP_885256.1 CDS phaG NC_002928.3 3315739 3316065 R subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit G complement(3315739..3316065) Bordetella parapertussis 12822 1668148 NP_885257.1 CDS phaF NC_002928.3 3316062 3316346 R subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit F complement(3316062..3316346) Bordetella parapertussis 12822 1668149 NP_885258.1 CDS phaE NC_002928.3 3316343 3316822 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E complement(3316343..3316822) Bordetella parapertussis 12822 1668150 NP_885259.1 CDS phaD NC_002928.3 3316819 3318447 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D complement(3316819..3318447) Bordetella parapertussis 12822 1668151 NP_885260.1 CDS phaC NC_002928.3 3318444 3318788 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C complement(3318444..3318788) Bordetella parapertussis 12822 1668152 NP_885261.1 CDS phaA NC_002928.3 3318788 3321721 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A complement(3318788..3321721) Bordetella parapertussis 12822 1668153 NP_885262.1 CDS BPP3083 NC_002928.3 3322144 3323130 D ortholog of Bordetella pertussis (BX470248) BP1690+BP2631; hypothetical protein 3322144..3323130 Bordetella parapertussis 12822 1664788 NP_885263.1 CDS BPP3084 NC_002928.3 3323178 3325814 R ortholog of Bordetella pertussis (BX470248) BP2632; GTP-binding protein complement(3323178..3325814) Bordetella parapertussis 12822 1664789 NP_885264.1 CDS BPP3085 NC_002928.3 3325811 3326932 R ortholog of Bordetella pertussis (BX470248) BP2633; exonuclease complement(3325811..3326932) Bordetella parapertussis 12822 1664790 NP_885265.1 CDS dadA NC_002928.3 3327009 3328313 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(3327009..3328313) Bordetella parapertussis 12822 1664791 NP_885266.1 CDS lrp NC_002928.3 3328449 3328916 D ortholog of Bordetella pertussis (BX470248) BP2635; leucine-responsive regulatory protein 3328449..3328916 Bordetella parapertussis 12822 1664792 NP_885267.1 CDS BPP3088 NC_002928.3 3328988 3329701 D ortholog of Bordetella pertussis (BX470248) BP2636; hypothetical protein 3328988..3329701 Bordetella parapertussis 12822 1664793 NP_885268.1 CDS BPP3089 NC_002928.3 3329830 3330975 D ortholog of Bordetella pertussis (BX470248) BP2637; lipoprotein 3329830..3330975 Bordetella parapertussis 12822 1664794 NP_885269.1 CDS BPP3090 NC_002928.3 3330977 3332707 R ortholog of Bordetella pertussis (BX470248) BP2638; hypothetical protein complement(3330977..3332707) Bordetella parapertussis 12822 1664795 NP_885270.1 CDS BPP3091 NC_002928.3 3332825 3333133 R ortholog of Bordetella pertussis (BX470248) BP2639; integral membrane protein complement(3332825..3333133) Bordetella parapertussis 12822 1664796 NP_885271.1 CDS BPP3092 NC_002928.3 3333146 3333958 R ortholog of Bordetella pertussis (BX470248) BP2640; ABC transporter inner membrane protein complement(3333146..3333958) Bordetella parapertussis 12822 1666293 NP_885272.1 CDS BPP3093 NC_002928.3 3333951 3334841 R ortholog of Bordetella pertussis (BX470248) BP2641; ABC transport protein, inner membrane component complement(3333951..3334841) Bordetella parapertussis 12822 1666294 NP_885273.1 CDS BPP3094 NC_002928.3 3334838 3335926 R ortholog of Bordetella pertussis (BX470248) BP2642; ABC transporter ATP-binding protein complement(3334838..3335926) Bordetella parapertussis 12822 1666295 NP_885274.1 CDS BPP3095 NC_002928.3 3335926 3337008 R ortholog of Bordetella pertussis (BX470248) BP2642A; ABC transporter ATP-binding protein complement(3335926..3337008) Bordetella parapertussis 12822 1666296 NP_885275.1 CDS glpR NC_002928.3 3337113 3337922 D ortholog of Bordetella pertussis (BX470248) BP2643; glycerol-3-phosphate regulon repressor protein 3337113..3337922 Bordetella parapertussis 12822 1666297 NP_885276.1 CDS BPP3097 NC_002928.3 3337962 3339566 D ortholog of Bordetella pertussis (BX470248) BP2644; glycerol-3-phosphate dehydrogenase 3337962..3339566 Bordetella parapertussis 12822 1667205 NP_885277.1 CDS BPP3098 NC_002928.3 3339647 3340387 D ortholog of Bordetella pertussis (BX470248) BP2645; IclR family regulatory protein 3339647..3340387 Bordetella parapertussis 12822 1667206 NP_885278.1 CDS BPP3099 NC_002928.3 3340395 3341264 R ortholog of Bordetella pertussis (BX470248) BP2646; oxidoreductase complement(3340395..3341264) Bordetella parapertussis 12822 1667207 NP_885279.1 CDS BPP3100 NC_002928.3 3341261 3342280 R ortholog of Bordetella pertussis (BX470248) BP2647; hypothetical protein complement(3341261..3342280) Bordetella parapertussis 12822 1667208 NP_885280.1 CDS BPP3101 NC_002928.3 3342277 3343659 R ortholog of Bordetella pertussis (BX470248) BP2648; hypothetical protein complement(3342277..3343659) Bordetella parapertussis 12822 1667209 NP_885281.1 CDS BPP3102 NC_002928.3 3343692 3344552 R ortholog of Bordetella pertussis (BX470248) BP2649; hypothetical protein complement(3343692..3344552) Bordetella parapertussis 12822 1667210 NP_885282.1 CDS BPP3103 NC_002928.3 3344802 3345494 R ortholog of Bordetella pertussis (BX470248) BP2650; hypothetical protein complement(3344802..3345494) Bordetella parapertussis 12822 1667211 NP_885283.1 CDS BPP3104 NC_002928.3 3345576 3346457 D ortholog of Bordetella pertussis (BX470248) BP2651; hypothetical protein 3345576..3346457 Bordetella parapertussis 12822 1667212 NP_885284.1 CDS BPP3105 NC_002928.3 3346530 3346940 D ortholog of Bordetella pertussis (BX470248) BP2652; hypothetical protein 3346530..3346940 Bordetella parapertussis 12822 1667213 NP_885285.1 CDS BPP3108 NC_002928.3 3348041 3348985 R ortholog of Bordetella pertussis (BX470248) BP2654; dihydrodipicolinate synthase complement(3348041..3348985) Bordetella parapertussis 12822 1667215 NP_885286.1 CDS BPP3109 NC_002928.3 3349204 3349890 D ortholog of Bordetella pertussis (BX470248) BP2655; IclR family regulatory protein 3349204..3349890 Bordetella parapertussis 12822 1667216 NP_885287.1 CDS BPP3110 NC_002928.3 3350070 3350444 R ortholog of Bordetella pertussis (BX470248) BP2656; hypothetical protein complement(3350070..3350444) Bordetella parapertussis 12822 1667217 NP_885288.1 CDS BPP3111 NC_002928.3 3350551 3351108 R ortholog of Bordetella pertussis (BX470248) BP2657; integral membrane protein complement(3350551..3351108) Bordetella parapertussis 12822 1667218 NP_885289.1 CDS BPP3112 NC_002928.3 3351236 3351652 R ortholog of Bordetella pertussis (BX470248) BP2658; peptidyl-tRNA hydrolase domain-containing protein complement(3351236..3351652) Bordetella parapertussis 12822 1666750 NP_885290.1 CDS BPP3113 NC_002928.3 3351800 3353020 D transposase for IS1001 element; transposase 3351800..3353020 Bordetella parapertussis 12822 1666751 NP_885291.1 CDS BPP3114 NC_002928.3 3353068 3353709 R ortholog of Bordetella pertussis (BX470248) BP0965; antioxidant protein complement(3353068..3353709) Bordetella parapertussis 12822 1666752 NP_885292.1 CDS BPP3115 NC_002928.3 3353792 3355618 R ortholog of Bordetella pertussis (BX470248) BP0964; acyl-CoA dehydrogenase complement(3353792..3355618) Bordetella parapertussis 12822 1666753 NP_885293.1 CDS etfA NC_002928.3 3355876 3356808 R ortholog of Bordetella pertussis (BX470248) BP0962; electron transfer flavoprotein subunit alpha complement(3355876..3356808) Bordetella parapertussis 12822 1666754 NP_885294.1 CDS etfB NC_002928.3 3356805 3357605 R ortholog of Bordetella pertussis (BX470248) BP0961; electron transfer flavoprotein subunit beta complement(3356805..3357605) Bordetella parapertussis 12822 1666755 NP_885295.1 CDS BPP3118 NC_002928.3 3357626 3358540 R ortholog of Bordetella pertussis (BX470248) BP0960; histone deacetylase complement(3357626..3358540) Bordetella parapertussis 12822 1667303 NP_885296.1 CDS mltB NC_002928.3 3358560 3359705 D ortholog of Bordetella pertussis (BX470248) BP0959; membrane-bound lytic murein transglycosylase B precursor 3358560..3359705 Bordetella parapertussis 12822 1667304 NP_885297.1 CDS cysM NC_002928.3 3359762 3360673 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(3359762..3360673) Bordetella parapertussis 12822 1667305 NP_885298.1 CDS rfaD NC_002928.3 3361373 3362362 R ortholog of Bordetella pertussis (BX470248) BP0955; ADP-L-glycero-D-manno-heptose-6-epimerase complement(3361373..3362362) Bordetella parapertussis 12822 1667307 NP_885299.1 CDS rfaE NC_002928.3 3362359 3363300 R ortholog of Bordetella pertussis (BX470248) BP0954; ADP-heptose synthase complement(3362359..3363300) Bordetella parapertussis 12822 1667308 NP_885300.1 CDS BPP3125 NC_002928.3 3363297 3364520 R ortholog of Bordetella pertussis (BX470248) BP0953; tetratricopeptide repeat protein complement(3363297..3364520) Bordetella parapertussis 12822 1667309 NP_885301.1 CDS BPP3126 NC_002928.3 3364563 3364877 R ortholog of Bordetella pertussis (BX470248) BP0952; hypothetical protein complement(3364563..3364877) Bordetella parapertussis 12822 1667310 NP_885302.1 CDS ihfB NC_002928.3 3365069 3365428 R ortholog of Bordetella pertussis (BX470248) BP0951; integration host factor beta-subunit complement(3365069..3365428) Bordetella parapertussis 12822 1667311 NP_885303.2 CDS rpsA NC_002928.3 3365430 3367145 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(3365430..3367145) Bordetella parapertussis 12822 1667312 NP_885304.1 CDS cmk NC_002928.3 3367331 3368002 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(3367331..3368002) Bordetella parapertussis 12822 1666657 NP_885305.1 CDS aroA NC_002928.3 3368017 3369345 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(3368017..3369345) Bordetella parapertussis 12822 1666658 NP_885306.1 CDS tyrA NC_002928.3 3369342 3370241 R ortholog of Bordetella pertussis (BX470248) BP0947; prephenate dehydrogenase complement(3369342..3370241) Bordetella parapertussis 12822 1666659 NP_885307.1 CDS pheA NC_002928.3 3370328 3371413 R ortholog of Bordetella pertussis (BX470248) BP0946; p-protein [includes: chorismate mutase and prephenate dehydratase] complement(3370328..3371413) Bordetella parapertussis 12822 1666660 NP_885308.1 CDS serC NC_002928.3 3371406 3372539 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(3371406..3372539) Bordetella parapertussis 12822 1666661 NP_885309.2 CDS gyrA NC_002928.3 3372539 3375220 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(3372539..3375220) Bordetella parapertussis 12822 1666662 NP_885310.1 CDS ompA NC_002928.3 3375591 3376172 D ortholog of Bordetella pertussis (BX470248) BP0943; outer membrane protein A precursor 3375591..3376172 Bordetella parapertussis 12822 1666663 NP_885311.1 CDS ubiG NC_002928.3 3376251 3377024 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 3376251..3377024 Bordetella parapertussis 12822 1666664 NP_885312.1 CDS BPP3137 NC_002928.3 3377021 3377698 D ortholog of Bordetella pertussis (BX470248) BP0941; phosphoglycolate phosphatase 3377021..3377698 Bordetella parapertussis 12822 1666665 NP_885313.1 CDS BPP3138 NC_002928.3 3377916 3379103 D ortholog of Bordetella pertussis (BX470248) BP0940; sugar efflux transporter 3377916..3379103 Bordetella parapertussis 12822 1666666 NP_885314.1 CDS BPP3139 NC_002928.3 3379678 3380898 D transposase for IS1001 element; transposase 3379678..3380898 Bordetella parapertussis 12822 1665250 NP_885315.1 CDS BPP3140 NC_002928.3 3380927 3381235 D hypothetical protein 3380927..3381235 Bordetella parapertussis 12822 1665251 NP_885316.1 CDS BPP3141 NC_002928.3 3381447 3381629 D ortholog of Bordetella pertussis (BX470248) BP0939; hypothetical protein 3381447..3381629 Bordetella parapertussis 12822 1665252 NP_885317.1 CDS BPP3142 NC_002928.3 3381691 3382083 D ortholog of Bordetella pertussis (BX470248) BP0937; hypothetical protein 3381691..3382083 Bordetella parapertussis 12822 1665253 NP_885318.1 CDS BPP3144 NC_002928.3 3383390 3384364 D ortholog of Bordetella pertussis (BX470248) BP0935; hypothetical protein 3383390..3384364 Bordetella parapertussis 12822 1665255 NP_885319.1 CDS BPP3145 NC_002928.3 3384399 3384758 D ortholog of Bordetella pertussis (BX470248) BP0934; hypothetical protein 3384399..3384758 Bordetella parapertussis 12822 1665256 NP_885320.1 CDS BPP3146 NC_002928.3 3384825 3385997 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 3384825..3385997 Bordetella parapertussis 12822 1666512 NP_885321.1 CDS BPP3148 NC_002928.3 3386546 3387415 D ortholog of Bordetella pertussis (BX470248) BP0931; hypothetical protein 3386546..3387415 Bordetella parapertussis 12822 1666514 NP_885322.1 CDS BPP3149 NC_002928.3 3387622 3389085 D ortholog of Bordetella pertussis (BX470248) BP0930; CoA ligase 3387622..3389085 Bordetella parapertussis 12822 1666515 NP_885323.1 CDS BPP3150 NC_002928.3 3389178 3389753 D ortholog of Bordetella pertussis (BX470248) BP0929; hypothetical protein 3389178..3389753 Bordetella parapertussis 12822 1666516 NP_885324.1 CDS BPP3151 NC_002928.3 3389778 3390767 R ortholog of Bordetella pertussis (BX470248) BP0928; LysR-type transcriptional regulator complement(3389778..3390767) Bordetella parapertussis 12822 1666517 NP_885325.1 CDS BPP3152 NC_002928.3 3390903 3391880 D ortholog of Bordetella pertussis (BX470248) BP0927; hypothetical protein 3390903..3391880 Bordetella parapertussis 12822 1666518 NP_885326.1 CDS BPP3153 NC_002928.3 3392006 3393079 D ortholog of Bordetella pertussis (BX470248) BP0926; hypothetical protein 3392006..3393079 Bordetella parapertussis 12822 1666519 NP_885327.1 CDS BPP3154 NC_002928.3 3393157 3394017 D ortholog of Bordetella pertussis (BX470248) BP0925; fumarylacetoacetate family hydrolase 3393157..3394017 Bordetella parapertussis 12822 1666520 NP_885328.1 CDS BPP3155 NC_002928.3 3394074 3394970 R ortholog of Bordetella pertussis (BX470248) BP0924; transcriptional regulator complement(3394074..3394970) Bordetella parapertussis 12822 1666521 NP_885329.1 CDS BPP3156 NC_002928.3 3395012 3395827 R ortholog of Bordetella pertussis (BX470248) BP0923; hypothetical protein complement(3395012..3395827) Bordetella parapertussis 12822 1666522 NP_885330.1 CDS BPP3157 NC_002928.3 3395941 3397173 D ortholog of Bordetella pertussis (BX470248) BP0922; hypothetical protein 3395941..3397173 Bordetella parapertussis 12822 1668362 NP_885331.1 CDS citB NC_002928.3 3397216 3398400 D ortholog of Bordetella pertussis (BX470248) BP0921; citrate utilization protein B 3397216..3398400 Bordetella parapertussis 12822 1668363 NP_885332.1 CDS BPP3159 NC_002928.3 3398421 3399824 D catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 3398421..3399824 Bordetella parapertussis 12822 1668364 NP_885333.1 CDS gabD NC_002928.3 3399874 3401328 R ortholog of Bordetella pertussis (BX470248) BP0919; succinate-semialdehyde dehydrogenase complement(3399874..3401328) Bordetella parapertussis 12822 1668365 NP_885334.1 CDS BPP3161 NC_002928.3 3401433 3402854 R ortholog of Bordetella pertussis (BX470248) BP0918; hypothetical protein complement(3401433..3402854) Bordetella parapertussis 12822 1668366 NP_885335.1 CDS BPP3162 NC_002928.3 3402954 3403733 R ortholog of Bordetella pertussis (BX470248) BP0916; ABC-transporter ATP-binding protein system complement(3402954..3403733) Bordetella parapertussis 12822 1668367 NP_885336.1 CDS BPP3163 NC_002928.3 3403757 3404584 R ortholog of Bordetella pertussis (BX470248) BP0915; inner membrane component of binding-protein-dependent transport system complement(3403757..3404584) Bordetella parapertussis 12822 1668368 NP_885337.1 CDS BPP3164 NC_002928.3 3404581 3405453 R ortholog of Bordetella pertussis (BX470248) BP0914; inner membrane component of binding-protein-dependent transport system complement(3404581..3405453) Bordetella parapertussis 12822 1668369 NP_885338.1 CDS BPP3167 NC_002928.3 3407720 3408271 D ortholog of Bordetella pertussis (BX470248) BP0911; decarboxylase 3407720..3408271 Bordetella parapertussis 12822 1668287 NP_885339.1 CDS BPP3168 NC_002928.3 3408284 3408892 D ortholog of Bordetella pertussis (BX470248) BP0910A; Similar to Amycolatopsis orientalis phosphonopyruvate decarboxylase Cza382.02 SWALL:Q9XBE9 (EMBL:AL078635) (371 aa) fasta scores: E(): 3e-20, 43.82% id in 162 aa, and to Streptomyces viridochromogenes phosphonopyruvate decarboxylase Ppd SWALL:O86938 (EMBL:Y14337) (397 aa) fasta scores: E(): 8.2e-18, 39.36% id in 188 aa; hypothetical protein 3408284..3408892 Bordetella parapertussis 12822 1668288 NP_885340.1 CDS BPP3169 NC_002928.3 3408919 3410118 D Similar to Rhizobium meliloti aspartate aminotransferase A AatA or r02325 or smc01578 SWALL:AATA_RHIME (SWALL:Q02635) (400 aa) fasta scores: E(): 6.9e-88, 55.94% id in 395 aa; aspartate aminotransferase 3408919..3410118 Bordetella parapertussis 12822 1668289 NP_885341.1 CDS BPP3170 NC_002928.3 3410115 3412250 D Similar to Sulfolobus solfataricus N-methylhydantoinase a HuyA-1 or sso1663 SWALL:Q97XP8 (EMBL:AE006780) (683 aa) fasta scores: E(): 1.7e-68, 33.28% id in 688 aa, and to Pseudomonas sp hydantoin utilization protein A HyuA SWALL:HYUA_PSESN (SWALL:Q01262) (690 aa) fasta scores: E(): 1.9e-65, 33% id in 703 aa; hydantoinase A 3410115..3412250 Bordetella parapertussis 12822 1668290 NP_885342.1 CDS BPP3171 NC_002928.3 3412247 3413908 D Similar to Pyrobaculum aerophilum N-methylhydantoinase B pae2028 SWALL:Q8ZW11 (EMBL:AE009853) (516 aa) fasta scores: E(): 2.9e-46, 33.72% id in 516 aa, and to Pseudomonas sp hydantoin utilization protein b hyuB SWALL:HYUB_PSESN (SWALL:Q01263) (592 aa) fasta scores: E(): 6.2e-26, 30.49% id in 564 aa; hydantoinase B 3412247..3413908 Bordetella parapertussis 12822 1668291 NP_885343.1 CDS BPP3172 NC_002928.3 3413979 3414959 D Similar to Rhizobium meliloti hypothetical protein ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.8e-42, 42.41% id in 323 aa, and to Variovorax paradoxus, and 2,4-diphenoxyacetic acid gene cluster SWALL:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 1.2e-35, 36.11% id in 324 aa; hypothetical protein 3413979..3414959 Bordetella parapertussis 12822 1668292 NP_885344.1 CDS BPP3173 NC_002928.3 3414956 3415813 D Similar to Pseudomonas putida flavoprotein Ecd SWALL:Q93AS3 (EMBL:AF417209) (274 aa) fasta scores: E(): 1.6e-48, 55.63% id in 266 aa, and to Escherichia coli oxygen-insensitive NADPH nitroreductase NfsA or MdaA or Mda18 or b0851 SWALL:NFSA_ECOLI (SWALL:P17117) (240 aa) fasta scores: E(): 7.6e-22, 37.5% id in 224 aa; nitroreductase 3414956..3415813 Bordetella parapertussis 12822 1668293 NP_885345.1 CDS BPP3174 NC_002928.3 3415887 3417257 D Similar to Brucella melitensis multidrug resistance protein B bmeii0280 SWALL:Q8YD97 (EMBL:AE009666) (463 aa) fasta scores: E(): 1e-77, 50.76% id in 455 aa, and to Escherichia coli hypothetical transport protein YebQ or b1828 SWALL:YEBQ_ECOLI (SWALL:P76269) (457 aa) fasta scores: E(): 7e-74, 49.44% id in 447 aa, and to Streptomyces glaucescens tetracenomycin C resistance and export protein TcmA SWALL:TCMA_STRGA (SWALL:P39886) (538 aa) fasta scores: E(): 7.9e-27, 30.58% id in 425 aa; efflux protein 3415887..3417257 Bordetella parapertussis 12822 1668294 NP_885346.1 CDS BPP3175 NC_002928.3 3417369 3418991 R Similar to Ralstonia solanacearum probable transmembrane protein rsc1893 or rs03455 SWALL:Q8XY70 (EMBL:AL646067) (533 aa) fasta scores: E(): 4.9e-69, 39.96% id in 538 aa; hypothetical protein complement(3417369..3418991) Bordetella parapertussis 12822 1668295 NP_885347.1 CDS BPP3176 NC_002928.3 3419127 3419981 D Similar to many eg. Pseudomonas spR9. hypothetical 30.7 kDa protein SWALL:Q9RBV8 (EMBL:AF157797) (283 aa) fasta scores: E(): 9.8e-38, 43.31% id in 284 aa; hypothetical protein 3419127..3419981 Bordetella parapertussis 12822 1665058 NP_885348.1 CDS BPP3177 NC_002928.3 3419990 3420430 R ortholog of Bordetella pertussis (BX470248) BP1747; hypothetical protein complement(3419990..3420430) Bordetella parapertussis 12822 1665059 NP_885349.1 CDS BPP3178 NC_002928.3 3420559 3421788 R ortholog of Bordetella pertussis (BX470248) BP1746; peptidoglycan-binding protein complement(3420559..3421788) Bordetella parapertussis 12822 1665060 NP_885350.1 CDS BPP3179 NC_002928.3 3421827 3422642 R ortholog of Bordetella pertussis (BX470248) BP1745; hypothetical protein complement(3421827..3422642) Bordetella parapertussis 12822 1665061 NP_885351.1 CDS BPP3180 NC_002928.3 3422696 3423847 D ortholog of Bordetella pertussis (BX470248) BP1744; hypothetical protein 3422696..3423847 Bordetella parapertussis 12822 1665062 NP_885352.1 CDS BPP3181 NC_002928.3 3423974 3424462 R ortholog of Bordetella pertussis (BX470248) BP1743; hypothetical protein complement(3423974..3424462) Bordetella parapertussis 12822 1665063 NP_885353.1 CDS BPP3182 NC_002928.3 3424459 3426747 R ortholog of Bordetella pertussis (BX470248) BP1741; ABC transporter complement(3424459..3426747) Bordetella parapertussis 12822 1665064 NP_885354.1 CDS cphA NC_002928.3 3429697 3432270 D catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 3429697..3432270 Bordetella parapertussis 12822 1665066 NP_885355.1 CDS BPP3185 NC_002928.3 3432535 3432735 D ortholog of Bordetella pertussis (BX470248) BP1738; hypothetical protein 3432535..3432735 Bordetella parapertussis 12822 1665787 NP_885356.1 CDS BPP3186 NC_002928.3 3432767 3432928 D ortholog of Bordetella pertussis (BX470248) BP1737; hypothetical protein 3432767..3432928 Bordetella parapertussis 12822 1665788 NP_885357.1 CDS BPP3187 NC_002928.3 3432986 3433324 D ortholog of Bordetella pertussis (BX470248) BP1736; hypothetical protein 3432986..3433324 Bordetella parapertussis 12822 1665789 NP_885358.1 CDS BPP3188 NC_002928.3 3433405 3434625 R transposase for IS1001 element; transposase complement(3433405..3434625) Bordetella parapertussis 12822 1665790 NP_885359.1 CDS BPP3189 NC_002928.3 3434787 3435668 R ortholog of Bordetella pertussis (BX470248) BP1156; hypothetical protein complement(3434787..3435668) Bordetella parapertussis 12822 1665791 NP_885360.1 CDS BPP3190 NC_002928.3 3435746 3437125 R ortholog of Bordetella pertussis (BX470248) BP1155; regulatory protein complement(3435746..3437125) Bordetella parapertussis 12822 1665792 NP_885361.1 CDS BPP3191 NC_002928.3 3437164 3438009 R ortholog of Bordetella pertussis (BX470248) BP1154; hypothetical protein complement(3437164..3438009) Bordetella parapertussis 12822 1665793 NP_885362.1 CDS BPP3192 NC_002928.3 3438025 3438369 R ortholog of Bordetella pertussis (BX470248) BP1153; hypothetical protein complement(3438025..3438369) Bordetella parapertussis 12822 1665794 NP_885363.1 CDS BPP3193 NC_002928.3 3438372 3438908 R ortholog of Bordetella pertussis (BX470248) BP1152; hypothetical protein complement(3438372..3438908) Bordetella parapertussis 12822 1665795 NP_885364.1 CDS BPP3194 NC_002928.3 3439080 3439655 R ortholog of Bordetella pertussis (BX470248) BP1151; hypothetical protein complement(3439080..3439655) Bordetella parapertussis 12822 1665796 NP_885365.1 CDS fabG NC_002928.3 3439758 3440495 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(3439758..3440495) Bordetella parapertussis 12822 1665797 NP_885366.1 CDS phbC NC_002928.3 3440563 3442200 R ortholog of Bordetella pertussis (BX470248) BP1149; poly-beta-hydroxybutyrate polymerase complement(3440563..3442200) Bordetella parapertussis 12822 1666188 NP_885367.1 CDS BPP3197 NC_002928.3 3442308 3443063 R ortholog of Bordetella pertussis (BX470248) BP1148; hypothetical protein complement(3442308..3443063) Bordetella parapertussis 12822 1666189 NP_885368.1 CDS rluD NC_002928.3 3443051 3444013 R ortholog of Bordetella pertussis (BX470248) BP1147; ribosomal large subunit pseudouridine synthase D complement(3443051..3444013) Bordetella parapertussis 12822 1666190 NP_885369.1 CDS comL NC_002928.3 3444115 3444915 D ortholog of Bordetella pertussis (BX470248) BP1146; competence lipoprotein precursor 3444115..3444915 Bordetella parapertussis 12822 1666191 NP_885370.1 CDS BPP3200 NC_002928.3 3444977 3447052 R ortholog of Bordetella pertussis (BX470248) BP1145; ATP-dependent helicase complement(3444977..3447052) Bordetella parapertussis 12822 1666192 NP_885371.1 CDS tex NC_002928.3 3447217 3449592 D ortholog of Bordetella pertussis (BX470248) BP1144; transcription accessory protein 3447217..3449592 Bordetella parapertussis 12822 1666193 NP_885372.1 CDS trpS NC_002928.3 3449673 3451028 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(3449673..3451028) Bordetella parapertussis 12822 1666194 NP_885373.1 CDS BPP3203 NC_002928.3 3451038 3451397 R ortholog of Bordetella pertussis (BX470248) BP1141; iron uptake protein complement(3451038..3451397) Bordetella parapertussis 12822 1666195 NP_885374.1 CDS BPP3204 NC_002928.3 3451402 3453027 R ortholog of Bordetella pertussis (BX470248) BP1140; iron uptake protein complement(3451402..3453027) Bordetella parapertussis 12822 1667812 NP_885375.1 CDS BPP3205 NC_002928.3 3453024 3453332 R ortholog of Bordetella pertussis (BX470248) BP1139; iron uptake protein complement(3453024..3453332) Bordetella parapertussis 12822 1667813 NP_885376.1 CDS bfrH NC_002928.3 3453449 3455926 R ortholog of Bordetella pertussis (BX470248) BP1138; ferric siderophore receptor complement(3453449..3455926) Bordetella parapertussis 12822 1667814 NP_885377.1 CDS fecI NC_002928.3 3456942 3457475 R ortholog of Bordetella pertussis (BX470248) BP1136; ECF family RNA polymerase sigma factor complement(3456942..3457475) Bordetella parapertussis 12822 1667816 NP_885378.1 CDS tauD NC_002928.3 3457735 3458583 D ortholog of Bordetella pertussis (BX470248) BP1135; alpha-ketoglutarate-dependent taurine dioxygenase 3457735..3458583 Bordetella parapertussis 12822 1667817 NP_885379.1 CDS BPP3210 NC_002928.3 3458580 3459302 D ortholog of Bordetella pertussis (BX470248) BP1132; short-chain dehydrogenase 3458580..3459302 Bordetella parapertussis 12822 1667818 NP_885380.1 CDS BPP3211 NC_002928.3 3459357 3460340 D ortholog of Bordetella pertussis (BX470248) BP1131; putattive exported protein 3459357..3460340 Bordetella parapertussis 12822 1667819 NP_885381.1 CDS BPP3212 NC_002928.3 3460368 3461315 R ortholog of Bordetella pertussis (BX470248) BP1129; LysR family transcriptional regulator complement(3460368..3461315) Bordetella parapertussis 12822 1667820 NP_885382.1 CDS fabG NC_002928.3 3461358 3462116 D ortholog of Bordetella pertussis (BX470248) BP1128; 3-oxoacyl-ACP reductase 3461358..3462116 Bordetella parapertussis 12822 1667821 NP_885383.1 CDS BPP3214 NC_002928.3 3462129 3463277 R ortholog of Bordetella pertussis (BX470248) BP1127; hypothetical protein complement(3462129..3463277) Bordetella parapertussis 12822 1668101 NP_885384.1 CDS odhL NC_002928.3 3463318 3464745 R E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(3463318..3464745) Bordetella parapertussis 12822 1668102 NP_885385.1 CDS odhB NC_002928.3 3464975 3466192 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(3464975..3466192) Bordetella parapertussis 12822 1668103 NP_885386.1 CDS sucA NC_002928.3 3466238 3469111 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(3466238..3469111) Bordetella parapertussis 12822 1668104 NP_885387.1 CDS BPP3219 NC_002928.3 3471520 3472020 R ortholog of Bordetella pertussis (BX470248) BP1122; transcription regulator AsnC complement(3471520..3472020) Bordetella parapertussis 12822 1668106 NP_885388.1 CDS aceE NC_002928.3 3472050 3474827 D paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 3472050..3474827 Bordetella parapertussis 12822 1668107 NP_885389.1 CDS maeB NC_002928.3 3474957 3477263 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 3474957..3477263 Bordetella parapertussis 12822 1668108 NP_885390.1 CDS fim2 NC_002928.3 3477436 3478071 D ortholog of Bordetella pertussis (BX470248) BP1119; serotype 2 fimbrial subunit precursor 3477436..3478071 Bordetella parapertussis 12822 1665114 NP_885391.1 CDS BPP3223 NC_002928.3 3478182 3478634 D Similar to Ralstonia solanacearum probable transmembrane protein rsc0795 or rs05042 SWALL:Q8Y195 (EMBL:AL646061) (150 aa) fasta scores: E(): 6.4e-34, 63.33% id in 150 aa; inner membrane protein 3478182..3478634 Bordetella parapertussis 12822 1665115 NP_885392.1 CDS BPP3224 NC_002928.3 3478650 3479801 R ortholog of Bordetella pertussis (BX470248) BP2356; hypothetical protein complement(3478650..3479801) Bordetella parapertussis 12822 1665116 NP_885393.1 CDS gltA NC_002928.3 3479851 3481161 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(3479851..3481161) Bordetella parapertussis 12822 1665117 NP_885394.1 CDS BPP3226 NC_002928.3 3481182 3481442 R ortholog of Bordetella pertussis (BX470248) BP2359; hypothetical protein complement(3481182..3481442) Bordetella parapertussis 12822 1665118 NP_885395.1 CDS sdhB NC_002928.3 3481468 3482184 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(3481468..3482184) Bordetella parapertussis 12822 1665119 NP_885396.1 CDS sdhA NC_002928.3 3482197 3483975 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(3482197..3483975) Bordetella parapertussis 12822 1665120 NP_885397.1 CDS sdhD NC_002928.3 3483979 3484362 R ortholog of Bordetella pertussis (BX470248) BP2362; succinate dehydrogenase hydrophobic membrane anchor protein complement(3483979..3484362) Bordetella parapertussis 12822 1665121 NP_885398.1 CDS sdhC NC_002928.3 3484362 3484775 R ortholog of Bordetella pertussis (BX470248) BP2363; succinate dehydrogenase cytochrome B subunit complement(3484362..3484775) Bordetella parapertussis 12822 1666133 NP_885399.1 CDS BPP3231 NC_002928.3 3484901 3485758 R ortholog of Bordetella pertussis (BX470248) BP2364; GntR family transcriptional regulator complement(3484901..3485758) Bordetella parapertussis 12822 1666134 NP_885400.1 CDS mdH NC_002928.3 3485969 3486958 D catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 3485969..3486958 Bordetella parapertussis 12822 1666135 NP_885401.1 CDS prpB NC_002928.3 3487220 3488113 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 3487220..3488113 Bordetella parapertussis 12822 1666136 NP_885402.1 CDS prpC NC_002928.3 3488187 3489389 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 3488187..3489389 Bordetella parapertussis 12822 1666137 NP_885403.2 CDS acnA NC_002928.3 3489508 3492102 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 3489508..3492102 Bordetella parapertussis 12822 1666138 NP_885404.1 CDS BPP3236 NC_002928.3 3492159 3493349 D ortholog of Bordetella pertussis (BX470248) BP2370; hypothetical protein 3492159..3493349 Bordetella parapertussis 12822 1666139 NP_885405.1 CDS prpD NC_002928.3 3493367 3494824 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 3493367..3494824 Bordetella parapertussis 12822 1666140 NP_885406.1 CDS BPP3238 NC_002928.3 3494846 3495316 D ortholog of Bordetella pertussis (BX470248) BP2372; inner membrane protein 3494846..3495316 Bordetella parapertussis 12822 1666141 NP_885407.1 CDS BPP3240 NC_002928.3 3497036 3497218 D ortholog of Bordetella pertussis (BX470248) BP2374; hypothetical protein 3497036..3497218 Bordetella parapertussis 12822 1666143 NP_885408.1 CDS BPP3241 NC_002928.3 3497352 3497882 D ortholog of Bordetella pertussis (BX470248) BP2375; hypothetical protein 3497352..3497882 Bordetella parapertussis 12822 1666738 NP_885409.1 CDS BPP3242 NC_002928.3 3497948 3498820 D ortholog of Bordetella pertussis (BX470248) BP2376; hypothetical protein 3497948..3498820 Bordetella parapertussis 12822 1666739 NP_885410.1 CDS BPP3243 NC_002928.3 3498958 3500622 D ortholog of Bordetella pertussis (BX470248) BP2377; AMP-binding protein 3498958..3500622 Bordetella parapertussis 12822 1666740 NP_885411.1 CDS BPP3244 NC_002928.3 3500634 3501155 D ortholog of Bordetella pertussis (BX470248) BP2378; transferase 3500634..3501155 Bordetella parapertussis 12822 1666741 NP_885412.1 CDS BPP3245 NC_002928.3 3501205 3502119 D ortholog of Bordetella pertussis (BX470248) BP2379; chaperonin 3501205..3502119 Bordetella parapertussis 12822 1666742 NP_885413.1 CDS BPP3246 NC_002928.3 3502196 3502942 D ortholog of Bordetella pertussis (BX470248) BP2380; hypothetical protein 3502196..3502942 Bordetella parapertussis 12822 1666743 NP_885414.1 CDS BPP3247 NC_002928.3 3502920 3503315 R ortholog of Bordetella pertussis (BX470248) BP2381; hypothetical protein complement(3502920..3503315) Bordetella parapertussis 12822 1666744 NP_885415.1 CDS BPP3248 NC_002928.3 3503340 3503819 R ortholog of Bordetella pertussis (BX470248) BP2382; hypothetical protein complement(3503340..3503819) Bordetella parapertussis 12822 1666745 NP_885416.1 CDS BPP3249 NC_002928.3 3503869 3504702 R ortholog of Bordetella pertussis (BX470248) BP2383; hypothetical protein complement(3503869..3504702) Bordetella parapertussis 12822 1666746 NP_885417.1 CDS BPP3250 NC_002928.3 3504823 3506388 D ortholog of Bordetella pertussis (BX470248) BP2384; transcriptional regulator 3504823..3506388 Bordetella parapertussis 12822 1666747 NP_885418.1 CDS ftsB NC_002928.3 3506480 3506836 R forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB complement(3506480..3506836) Bordetella parapertussis 12822 1665020 NP_885419.1 CDS eno NC_002928.3 3506918 3508204 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(3506918..3508204) Bordetella parapertussis 12822 1665021 NP_885420.1 CDS BPP3253 NC_002928.3 3508210 3508494 R ortholog of Bordetella pertussis (BX470248) BP2387; hypothetical protein complement(3508210..3508494) Bordetella parapertussis 12822 1665022 NP_885421.1 CDS kdsA NC_002928.3 3508504 3509361 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(3508504..3509361) Bordetella parapertussis 12822 1665023 NP_885422.1 CDS pyrG NC_002928.3 3509358 3511010 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3509358..3511010) Bordetella parapertussis 12822 1665024 NP_885423.1 CDS BPP3256 NC_002928.3 3511226 3513025 R ortholog of Bordetella pertussis (BX470248) BP2391; aminopeptidase complement(3511226..3513025) Bordetella parapertussis 12822 1665025 NP_885424.1 CDS BPP3257 NC_002928.3 3513034 3513852 R ortholog of Bordetella pertussis (BX470248) BP2392; transporter complement(3513034..3513852) Bordetella parapertussis 12822 1665026 NP_885425.1 CDS BPP3258 NC_002928.3 3513879 3515027 R ortholog of Bordetella pertussis (BX470248) BP2393; D-aminopeptidase complement(3513879..3515027) Bordetella parapertussis 12822 1665027 NP_885426.1 CDS BPP3259 NC_002928.3 3515045 3515944 R ortholog of Bordetella pertussis (BX470248) BP2394; binding-protein-dependent transport permease complement(3515045..3515944) Bordetella parapertussis 12822 1665028 NP_885427.1 CDS BPP3260 NC_002928.3 3515952 3516872 R ortholog of Bordetella pertussis (BX470248) BP2395; binding-protein-dependent transport permease complement(3515952..3516872) Bordetella parapertussis 12822 1667256 NP_885428.1 CDS BPP3261 NC_002928.3 3516934 3518547 R ortholog of Bordetella pertussis (BX470248) BP2396; binding-protein-dependent transport periplasmic protein complement(3516934..3518547) Bordetella parapertussis 12822 1667257 NP_885429.1 CDS BPP3262 NC_002928.3 3518558 3520468 R ortholog of Bordetella pertussis (BX470248) BP2397; ABC transporter ATP-binding protein complement(3518558..3520468) Bordetella parapertussis 12822 1667258 NP_885430.1 CDS BPP3263 NC_002928.3 3520513 3521493 R ortholog of Bordetella pertussis (BX470248) BP2398; L-asparaginase complement(3520513..3521493) Bordetella parapertussis 12822 1667259 NP_885431.1 CDS BPP3264 NC_002928.3 3521490 3522374 R ortholog of Bordetella pertussis (BX470248) BP2399; transcriptional regulator complement(3521490..3522374) Bordetella parapertussis 12822 1667260 NP_885432.1 CDS BPP3265 NC_002928.3 3522598 3523251 R ortholog of Bordetella pertussis (BX470248) BP2400; coenzyme A transferase subunit complement(3522598..3523251) Bordetella parapertussis 12822 1667261 NP_885433.1 CDS BPP3266 NC_002928.3 3523264 3524043 R ortholog of Bordetella pertussis (BX470248) BP2401; coenzyme A transferase subunit complement(3523264..3524043) Bordetella parapertussis 12822 1667262 NP_885434.1 CDS BPP3267 NC_002928.3 3524066 3524461 R ortholog of Bordetella pertussis (BX470248) BP2402; hypothetical protein complement(3524066..3524461) Bordetella parapertussis 12822 1667263 NP_885435.1 CDS BPP3268 NC_002928.3 3524625 3526271 D ortholog of Bordetella pertussis (BX470248) BP2403; electron transfer flavoprotein-ubiquinone oxidoreductase 3524625..3526271 Bordetella parapertussis 12822 1668236 NP_885436.1 CDS BPP3269 NC_002928.3 3526368 3527252 D ortholog of Bordetella pertussis (BX470248) BP2404; hypothetical protein 3526368..3527252 Bordetella parapertussis 12822 1668237 NP_885437.1 CDS BPP3270 NC_002928.3 3527249 3528406 D ortholog of Bordetella pertussis (BX470248) BP2405; cytochrome p450 oxidoreductase 3527249..3528406 Bordetella parapertussis 12822 1668238 NP_885438.1 CDS BPP3271 NC_002928.3 3528403 3528765 D ortholog of Bordetella pertussis (BX470248) BP2406; hypothetical protein 3528403..3528765 Bordetella parapertussis 12822 1668239 NP_885439.1 CDS ltaE NC_002928.3 3528779 3529798 R ortholog of Bordetella pertussis (BX470248) BP2407; low-specificity L-threonine aldolase complement(3528779..3529798) Bordetella parapertussis 12822 1668240 NP_885440.1 CDS BPP3273 NC_002928.3 3529820 3530716 R ortholog of Bordetella pertussis (BX470248) BP2408; integral membrane protein complement(3529820..3530716) Bordetella parapertussis 12822 1668241 NP_885441.2 CDS BPP3274 NC_002928.3 3530862 3532841 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(3530862..3532841) Bordetella parapertussis 12822 1668242 NP_885442.1 CDS BPP3275 NC_002928.3 3533053 3534393 R ortholog of Bordetella pertussis (BX470248) BP2410; integral membrane protein complement(3533053..3534393) Bordetella parapertussis 12822 1668243 NP_885443.1 CDS BPP3276 NC_002928.3 3534390 3534797 R ortholog of Bordetella pertussis (BX470248) BP2411; hypothetical protein complement(3534390..3534797) Bordetella parapertussis 12822 1668244 NP_885444.1 CDS prpE NC_002928.3 3534794 3536683 R catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase complement(3534794..3536683) Bordetella parapertussis 12822 1668245 NP_885445.1 CDS BPP3278 NC_002928.3 3536908 3537576 D ortholog of Bordetella pertussis (BX470248) BP2413; lipoprotein 3536908..3537576 Bordetella parapertussis 12822 1664747 NP_885446.1 CDS BPP3279 NC_002928.3 3537711 3538022 R ortholog of Bordetella pertussis (BX470248) BP2414; hypothetical protein complement(3537711..3538022) Bordetella parapertussis 12822 1664748 NP_885447.1 CDS BPP3280 NC_002928.3 3538238 3539182 R ortholog of Bordetella pertussis (BX470248) BP2416; transcriptional regulator CysB-like protein complement(3538238..3539182) Bordetella parapertussis 12822 1664749 NP_885448.1 CDS BPP3281 NC_002928.3 3539282 3540775 R ortholog of Bordetella pertussis (BX470248) BP2417; oxidoreductase complement(3539282..3540775) Bordetella parapertussis 12822 1664750 NP_885449.1 CDS BPP3282 NC_002928.3 3540872 3542089 R ortholog of Bordetella pertussis (BX470248) BP2418; ABC transport protein, substrate-binding component complement(3540872..3542089) Bordetella parapertussis 12822 1664751 NP_885450.1 CDS BPP3283 NC_002928.3 3542229 3543149 D ortholog of Bordetella pertussis (BX470248) BP2419; LysR family transcriptional regulator 3542229..3543149 Bordetella parapertussis 12822 1664752 NP_885451.1 CDS BPP3284 NC_002928.3 3543146 3544258 R ortholog of Bordetella pertussis (BX470248) BP2420; integral membrane protein complement(3543146..3544258) Bordetella parapertussis 12822 1664753 NP_885452.1 CDS pepA NC_002928.3 3544312 3545811 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 3544312..3545811 Bordetella parapertussis 12822 1664754 NP_885453.1 CDS BPP3286 NC_002928.3 3545829 3546284 D ortholog of Bordetella pertussis (BX470248) BP2422; hypothetical protein 3545829..3546284 Bordetella parapertussis 12822 1664755 NP_885454.1 CDS BPP3287 NC_002928.3 3546315 3546641 D ortholog of Bordetella pertussis (BX470248) BP2423; hypothetical protein 3546315..3546641 Bordetella parapertussis 12822 1664756 NP_885455.1 CDS BPP3288 NC_002928.3 3546741 3547451 D ortholog of Bordetella pertussis (BX470248) BP2424; integral membrane protein 3546741..3547451 Bordetella parapertussis 12822 1664757 NP_885456.1 CDS BPP3289 NC_002928.3 3547514 3548587 D ortholog of Bordetella pertussis (BX470248) BP2425; hypothetical protein 3547514..3548587 Bordetella parapertussis 12822 1666144 NP_885457.1 CDS BPP3290 NC_002928.3 3548584 3549564 D ortholog of Bordetella pertussis (BX470248) BP2426; hypothetical protein 3548584..3549564 Bordetella parapertussis 12822 1666145 NP_885458.1 CDS BPP3291 NC_002928.3 3549568 3550668 D ortholog of Bordetella pertussis (BX470248) BP2427; threonine synthase 3549568..3550668 Bordetella parapertussis 12822 1666146 NP_885459.1 CDS BPP3292 NC_002928.3 3550665 3551600 R ortholog of Bordetella pertussis (BX470248) BP2428; LysR family transcriptional regulator complement(3550665..3551600) Bordetella parapertussis 12822 1666147 NP_885460.1 CDS BPP3293 NC_002928.3 3551605 3552192 R ortholog of Bordetella pertussis (BX470248) BP2429; hypothetical protein complement(3551605..3552192) Bordetella parapertussis 12822 1666148 NP_885461.1 CDS era NC_002928.3 3552185 3553075 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(3552185..3553075) Bordetella parapertussis 12822 1666149 NP_885462.1 CDS rnc NC_002928.3 3553072 3553842 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(3553072..3553842) Bordetella parapertussis 12822 1666150 NP_885463.1 CDS lep NC_002928.3 3553839 3554723 R ortholog of Bordetella pertussis (BX470248) BP2432; signal peptidase I complement(3553839..3554723) Bordetella parapertussis 12822 1666151 NP_885464.1 CDS lepA NC_002928.3 3554746 3556539 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(3554746..3556539) Bordetella parapertussis 12822 1666023 NP_885465.1 CDS mucD NC_002928.3 3556670 3558157 R ortholog of Bordetella pertussis (BX470248) BP2434; serine protease complement(3556670..3558157) Bordetella parapertussis 12822 1666024 NP_885466.1 CDS mucB NC_002928.3 3558195 3559256 R ortholog of Bordetella pertussis (BX470248) BP2435; sigma factor regulatory protein complement(3558195..3559256) Bordetella parapertussis 12822 1666025 NP_885467.1 CDS BPP3300 NC_002928.3 3559253 3559762 R ortholog of Bordetella pertussis (BX470248) BP2436; hypothetical protein complement(3559253..3559762) Bordetella parapertussis 12822 1666026 NP_885468.1 CDS sigE NC_002928.3 3559766 3560365 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(3559766..3560365) Bordetella parapertussis 12822 1666027 NP_885469.1 CDS BPP3302 NC_002928.3 3560362 3560862 R ortholog of Bordetella pertussis (BX470248) BP2438; integral membrane protein complement(3560362..3560862) Bordetella parapertussis 12822 1665541 NP_885470.1 CDS fabF NC_002928.3 3560864 3562093 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(3560864..3562093) Bordetella parapertussis 12822 1665542 NP_885471.1 CDS acpP NC_002928.3 3562283 3562579 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(3562283..3562579) Bordetella parapertussis 12822 1665543 NP_885472.1 CDS fabG NC_002928.3 3562705 3563457 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(3562705..3563457) Bordetella parapertussis 12822 1665544 NP_885473.1 CDS fabD NC_002928.3 3563459 3564394 R ortholog of Bordetella pertussis (BX470248) BP2442; ACP S-malonyltransferase complement(3563459..3564394) Bordetella parapertussis 12822 1665545 NP_885474.1 CDS fabH NC_002928.3 3564476 3565465 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(3564476..3565465) Bordetella parapertussis 12822 1665546 NP_885475.1 CDS BPP3308 NC_002928.3 3565462 3566520 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(3565462..3566520) Bordetella parapertussis 12822 1665547 NP_885476.1 CDS rpmF NC_002928.3 3566577 3566759 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(3566577..3566759) Bordetella parapertussis 12822 1665548 NP_885477.1 CDS BPP3310 NC_002928.3 3566811 3567404 R ortholog of Bordetella pertussis (BX470248) BP2446; hypothetical protein complement(3566811..3567404) Bordetella parapertussis 12822 1665549 NP_885478.1 CDS maf NC_002928.3 3567513 3568112 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 3567513..3568112 Bordetella parapertussis 12822 1665550 NP_885479.1 CDS BPP3312 NC_002928.3 3568109 3568819 D ortholog of Bordetella pertussis (BX470248) BP2448; hypothetical protein 3568109..3568819 Bordetella parapertussis 12822 1665551 NP_885480.1 CDS BPP3313 NC_002928.3 3568821 3569648 D ortholog of Bordetella pertussis (BX470248) BP2449; exported hydrolase 3568821..3569648 Bordetella parapertussis 12822 1665552 NP_885481.1 CDS BPP3314 NC_002928.3 3569645 3570307 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ complement(3569645..3570307) Bordetella parapertussis 12822 1667291 NP_885482.1 CDS BPP3315 NC_002928.3 3570315 3571274 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY complement(3570315..3571274) Bordetella parapertussis 12822 1667292 NP_885483.1 CDS BPP3316 NC_002928.3 3571431 3572102 R ortholog of Bordetella pertussis (BX470248) BP0478; hydrolase complement(3571431..3572102) Bordetella parapertussis 12822 1667293 NP_885484.1 CDS rluC NC_002928.3 3572105 3573070 R ortholog of Bordetella pertussis (BX470248) BP0477; ribosomal large subunit pseudouridine synthase C complement(3572105..3573070) Bordetella parapertussis 12822 1667294 NP_885485.1 CDS rne NC_002928.3 3573578 3576703 D ortholog of Bordetella pertussis (BX470248) BP0475; ribonuclease E 3573578..3576703 Bordetella parapertussis 12822 1667295 NP_885486.1 CDS BPP3319 NC_002928.3 3576779 3577846 R ortholog of Bordetella pertussis (BX470248) BP0474; choloylglycine hydrolase complement(3576779..3577846) Bordetella parapertussis 12822 1667296 NP_885487.1 CDS BPP3320 NC_002928.3 3578103 3578639 R ortholog of Bordetella pertussis (BX470248) BP3592; lipoprotein complement(3578103..3578639) Bordetella parapertussis 12822 1667297 NP_885488.1 CDS accD NC_002928.3 3578849 3579727 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(3578849..3579727) Bordetella parapertussis 12822 1667298 NP_885489.1 CDS trpA NC_002928.3 3579764 3580621 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(3579764..3580621) Bordetella parapertussis 12822 1667299 NP_885490.1 CDS trpB NC_002928.3 3580625 3581824 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(3580625..3581824) Bordetella parapertussis 12822 1667300 NP_885491.1 CDS BPP3324 NC_002928.3 3581934 3583106 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase complement(3581934..3583106) Bordetella parapertussis 12822 1667301 NP_885492.1 CDS BPP3326 NC_002928.3 3585459 3586292 D ortholog of Bordetella pertussis (BX470248) BP3586; hypothetical protein 3585459..3586292 Bordetella parapertussis 12822 1665897 NP_885493.1 CDS BPP3327 NC_002928.3 3586289 3586798 D ortholog of Bordetella pertussis (BX470248) BP3585; hypothetical protein 3586289..3586798 Bordetella parapertussis 12822 1665898 NP_885494.1 CDS BPP3328 NC_002928.3 3586993 3587343 R ortholog of Bordetella pertussis (BX470248) BP3584; hypothetical protein complement(3586993..3587343) Bordetella parapertussis 12822 1665899 NP_885495.1 CDS pncB NC_002928.3 3587395 3588612 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(3587395..3588612) Bordetella parapertussis 12822 1665900 NP_885496.1 CDS BPP3330 NC_002928.3 3588788 3589060 D ortholog of Bordetella pertussis (BX470248) BP3582; ferredoxin 3588788..3589060 Bordetella parapertussis 12822 1665901 NP_885497.1 CDS BPP3331 NC_002928.3 3589106 3589903 D ortholog of Bordetella pertussis (BX470248) BP3581; ferredoxin--NADP reductase 3589106..3589903 Bordetella parapertussis 12822 1665902 NP_885498.1 CDS BPP3332 NC_002928.3 3590048 3591274 D ortholog of Bordetella pertussis (BX470248) BP3580; intracellular PHB depolymerase 3590048..3591274 Bordetella parapertussis 12822 1665903 NP_885499.1 CDS BPP3333 NC_002928.3 3591332 3591973 D Involved in the electron transport chain; ferredoxin 3591332..3591973 Bordetella parapertussis 12822 1665904 NP_885500.1 CDS nth NC_002928.3 3591970 3592605 D ortholog of Bordetella pertussis (BX470248) BP3578; endonuclease III 3591970..3592605 Bordetella parapertussis 12822 1666889 NP_885501.1 CDS BPP3335 NC_002928.3 3592865 3593638 D ortholog of Bordetella pertussis (BX470248) BP3577; ABC transporter ATP-binding protein 3592865..3593638 Bordetella parapertussis 12822 1666890 NP_885502.1 CDS BPP3336 NC_002928.3 3593635 3594345 D ortholog of Bordetella pertussis (BX470248) BP3576; ABC transporter ATP-binding protein 3593635..3594345 Bordetella parapertussis 12822 1666891 NP_885503.1 CDS BPP3337 NC_002928.3 3594404 3595618 D ortholog of Bordetella pertussis (BX470248) BP3575; hypothetical protein 3594404..3595618 Bordetella parapertussis 12822 1666892 NP_885504.1 CDS BPP3338 NC_002928.3 3595710 3596597 D ortholog of Bordetella pertussis (BX470248) BP3574; branched-chain amino acid ABC transporter permease 3595710..3596597 Bordetella parapertussis 12822 1666893 NP_885505.1 CDS BPP3339 NC_002928.3 3596594 3597565 D ortholog of Bordetella pertussis (BX470248) BP3573; branched-chain amino acid ABC transporter permease 3596594..3597565 Bordetella parapertussis 12822 1666894 NP_885506.1 CDS BPP3340 NC_002928.3 3597661 3598659 D ortholog of Bordetella pertussis (BX470248) BP3572; solute-binding periplasmic protein 3597661..3598659 Bordetella parapertussis 12822 1666895 NP_885507.2 CDS BPP3341 NC_002928.3 3598691 3599530 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; aminotransferase 3598691..3599530 Bordetella parapertussis 12822 1666896 NP_885508.1 CDS BPP3342 NC_002928.3 3599577 3600329 R Similar to Ralstonia solanacearum probable amino-acid composite ATP-binding transmembrane ABC transporter protein rsp0707 or rs01742 SWALL:Q8XRX4 (EMBL:AL646080) (247 aa) fasta scores: E(): 7.4e-55, 72.84% id in 243 aa, and to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein livf livf or b3454 SWALL:LIVF_ECOLI (SWALL:P22731) (237 aa) fasta scores: E(): 1.8e-33, 48.73% id in 238 aa; branched-chain amino acid ABC transporter complement(3599577..3600329) Bordetella parapertussis 12822 1666897 NP_885509.1 CDS BPP3343 NC_002928.3 3600326 3602164 R ortholog of Bordetella pertussis (BX470248) BP3570; branched-chain amino acid transport system protein complement(3600326..3602164) Bordetella parapertussis 12822 1665811 NP_885510.1 CDS BPP3344 NC_002928.3 3602170 3603207 R ortholog of Bordetella pertussis (BX470248) BP3569; branched-chain amino acid ABC transporter permease complement(3602170..3603207) Bordetella parapertussis 12822 1665812 NP_885511.1 CDS BPP3345 NC_002928.3 3603369 3604532 R ortholog of Bordetella pertussis (BX470248) BP3568; hypothetical protein complement(3603369..3604532) Bordetella parapertussis 12822 1665813 NP_885512.1 CDS BPP3346 NC_002928.3 3604765 3605322 R ortholog of Bordetella pertussis (BX470248) BP3567; BioY family protein complement(3604765..3605322) Bordetella parapertussis 12822 1665814 NP_885513.1 CDS BPP3347 NC_002928.3 3605366 3605959 R ortholog of Bordetella pertussis (BX470248) BP3566; cobalt transport protein complement(3605366..3605959) Bordetella parapertussis 12822 1665815 NP_885514.1 CDS BPP3348 NC_002928.3 3605956 3606633 R ortholog of Bordetella pertussis (BX470248) BP3565; ABC transporter ATP-binding protein complement(3605956..3606633) Bordetella parapertussis 12822 1665816 NP_885515.1 CDS msrB NC_002928.3 3606685 3607086 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 3606685..3607086 Bordetella parapertussis 12822 1665683 NP_885516.1 CDS BPP3350 NC_002928.3 3607083 3607652 D ortholog of Bordetella pertussis (BX470248) BP3563; intracellular septation protein 3607083..3607652 Bordetella parapertussis 12822 1665684 NP_885517.1 CDS BPP3351 NC_002928.3 3607674 3607958 D ortholog of Bordetella pertussis (BX470248) BP3562; BolA-like protein 3607674..3607958 Bordetella parapertussis 12822 1665685 NP_885518.1 CDS BPP3352 NC_002928.3 3607987 3608763 D ortholog of Bordetella pertussis (BX470248) BP3561; peptidyl-prolyl cis-trans isomerase 3607987..3608763 Bordetella parapertussis 12822 1665686 NP_885519.1 CDS ligA NC_002928.3 3608847 3610937 R ortholog of Bordetella pertussis (BX470248) BP3560; DNA ligase complement(3608847..3610937) Bordetella parapertussis 12822 1665687 NP_885520.1 CDS BPP3354 NC_002928.3 3610937 3611995 R ortholog of Bordetella pertussis (BX470248) BP3559; hypothetical protein complement(3610937..3611995) Bordetella parapertussis 12822 1665688 NP_885521.1 CDS BPP3355 NC_002928.3 3612040 3615627 R ortholog of Bordetella pertussis (BX470248) BP3558; chromosome partition protein complement(3612040..3615627) Bordetella parapertussis 12822 1665689 NP_885522.1 CDS BPP3356 NC_002928.3 3615830 3617140 D ortholog of Bordetella pertussis (BX470248) BP3557; lysophospholipid transporter LplT 3615830..3617140 Bordetella parapertussis 12822 1666623 NP_885523.1 CDS BPP3357 NC_002928.3 3617159 3618055 R ortholog of Bordetella pertussis (BX470248) BP3556; bacteriophage-related DNA polymerase complement(3617159..3618055) Bordetella parapertussis 12822 1666624 NP_885524.1 CDS BPP3358 NC_002928.3 3618042 3619289 R ortholog of Bordetella pertussis (BX470248) BP3555; acetyltransferase complement(3618042..3619289) Bordetella parapertussis 12822 1666625 NP_885525.1 CDS ompR NC_002928.3 3619419 3620153 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 3619419..3620153 Bordetella parapertussis 12822 1666626 NP_885526.1 CDS risS NC_002928.3 3620158 3621582 D ortholog of Bordetella pertussis (BX470248) BP3553; sensor kinase 3620158..3621582 Bordetella parapertussis 12822 1666627 NP_885527.1 CDS ahpC NC_002928.3 3621645 3622193 D ortholog of Bordetella pertussis (BX470248) BP3552; Similar to Streptomyces coelicolor hydroperoxide reductase AhpC SWALL:Q9RN72 (EMBL:AF186371) (184 aa) fasta scores: E(): 7.6e-31, 51.09% id in 182 aa, and to Ralstonia solanacearum alkyl hydroperoxide reductase AhpC2 or rsc1646 or rs04022 SWALL:Q8XYW0 (EMBL:AL646065) (230 aa) fasta scores: E(): 1.7e-63, 85.16% id in 182 aa; alkyl hydroperoxide reductase 3621645..3622193 Bordetella parapertussis 12822 1666628 NP_885528.1 CDS ahpD NC_002928.3 3622249 3622767 D ortholog of Bordetella pertussis (BX470248) BP3551; Similar to Mycobacterium tuberculosis, and Mycobacterium bovis AhpD protein or rv2429 or mt2504 or mtcy428.17C SWALL:AHPD_MYCTU (SWALL:Q57353) (177 aa) fasta scores: E(): 1.6e-12, 37.95% id in 166 aa, and to Ralstonia solanacearum antioxidant protein AhpD or rsc1645 or rs04020 SWALL:Q8XYW1 (EMBL:AL646065) (175 aa) fasta scores: E(): 2.8e-41, 63.58% id in 173 aa; antioxidant protein 3622249..3622767 Bordetella parapertussis 12822 1666629 NP_885529.1 CDS BPP3363 NC_002928.3 3622835 3623515 R ortholog of Bordetella pertussis (BX470248) BP3550; AraC family transcription regulator complement(3622835..3623515) Bordetella parapertussis 12822 1666630 NP_885530.1 CDS ispF NC_002928.3 3624983 3625471 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(3624983..3625471) Bordetella parapertussis 12822 1666720 NP_885531.1 CDS ispD NC_002928.3 3625468 3626151 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3625468..3626151) Bordetella parapertussis 12822 1666721 NP_885532.1 CDS mfd NC_002928.3 3626181 3629636 D ortholog of Bordetella pertussis (BX470248) BP0864; transcription-repair coupling factor 3626181..3629636 Bordetella parapertussis 12822 1666722 NP_885533.1 CDS serB NC_002928.3 3629672 3630532 D ortholog of Bordetella pertussis (BX470248) BP0863; phosphoserine phosphatase 3629672..3630532 Bordetella parapertussis 12822 1666723 NP_885534.1 CDS BPP3369 NC_002928.3 3630633 3631550 R ortholog of Bordetella pertussis (BX470248) BP0862; LysR family transcriptional regulator complement(3630633..3631550) Bordetella parapertussis 12822 1666724 NP_885535.1 CDS BPP3370 NC_002928.3 3631688 3632668 D ortholog of Bordetella pertussis (BX470248) BP0861; hypothetical protein 3631688..3632668 Bordetella parapertussis 12822 1666725 NP_885536.1 CDS BPP3371 NC_002928.3 3632728 3634518 D catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; catalytic; acetolactate synthase catalytic subunit 3632728..3634518 Bordetella parapertussis 12822 1666726 NP_885537.1 CDS fabG NC_002928.3 3634515 3635291 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 3634515..3635291 Bordetella parapertussis 12822 1667640 NP_885538.1 CDS BPP3374 NC_002928.3 3635894 3637114 R transposase for IS1001 element; transposase complement(3635894..3637114) Bordetella parapertussis 12822 1667642 NP_885539.1 CDS bfrD NC_002928.3 3639689 3641920 R ortholog of Bordetella pertussis (BX470248) BP0856; TonB-dependent receptor for iron transport complement(3639689..3641920) Bordetella parapertussis 12822 1667644 NP_885540.1 CDS BPP3377 NC_002928.3 3642223 3642552 R ortholog of Bordetella pertussis (BX470248) BP0855; hypothetical protein complement(3642223..3642552) Bordetella parapertussis 12822 1667645 NP_885541.1 CDS nuoN NC_002928.3 3642569 3644053 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(3642569..3644053) Bordetella parapertussis 12822 1667646 NP_885542.1 CDS nuoM NC_002928.3 3644064 3645566 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(3644064..3645566) Bordetella parapertussis 12822 1667647 NP_885543.1 CDS nuoL NC_002928.3 3645563 3647575 R ortholog of Bordetella pertussis (BX470248) BP0852; NADH-ubiquinone oxidoreductase, chain L complement(3645563..3647575) Bordetella parapertussis 12822 1665919 NP_885544.1 CDS nuoK NC_002928.3 3647593 3647901 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(3647593..3647901) Bordetella parapertussis 12822 1665920 NP_885545.1 CDS nuoJ NC_002928.3 3647898 3648545 R ortholog of Bordetella pertussis (BX470248) BP0850; NADH-ubiquinone oxidoreductase, chain J complement(3647898..3648545) Bordetella parapertussis 12822 1665921 NP_885546.1 CDS nuoI NC_002928.3 3648563 3649006 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(3648563..3649006) Bordetella parapertussis 12822 1665922 NP_885547.1 CDS nuoH NC_002928.3 3649073 3650146 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(3649073..3650146) Bordetella parapertussis 12822 1665165 NP_885548.1 CDS nuoG NC_002928.3 3650146 3652473 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G complement(3650146..3652473) Bordetella parapertussis 12822 1665166 NP_885549.1 CDS nuoF NC_002928.3 3652489 3653856 R ortholog of Bordetella pertussis (BX470248) BP0846; respiratory-chain NADH dehydrogenase, 51 kDa subunit complement(3652489..3653856) Bordetella parapertussis 12822 1665167 NP_885550.1 CDS nuoE NC_002928.3 3653853 3654347 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(3653853..3654347) Bordetella parapertussis 12822 1665168 NP_885551.1 CDS nuoD NC_002928.3 3654393 3655649 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(3654393..3655649) Bordetella parapertussis 12822 1665169 NP_885552.2 CDS nuoC NC_002928.3 3655652 3656275 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C complement(3655652..3656275) Bordetella parapertussis 12822 1665170 NP_885553.1 CDS nuoB NC_002928.3 3656350 3656826 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(3656350..3656826) Bordetella parapertussis 12822 1667762 NP_885554.1 CDS nuoA NC_002928.3 3656863 3657222 R ortholog of Bordetella pertussis (BX470248) BP0841; NADH-ubiquinone oxidoreductase chain 3 complement(3656863..3657222) Bordetella parapertussis 12822 1667763 NP_885555.1 CDS BPP3392 NC_002928.3 3657412 3658578 R ortholog of Bordetella pertussis (BX470248) BP0840; outer membrane porin protein precursor complement(3657412..3658578) Bordetella parapertussis 12822 1667764 NP_885556.1 CDS BPP3393 NC_002928.3 3659033 3659626 D ortholog of Bordetella pertussis (BX470248) BP0838; TetR family transcriptional regulator 3659033..3659626 Bordetella parapertussis 12822 1667765 NP_885557.1 CDS BPP3394 NC_002928.3 3659628 3660062 D ortholog of Bordetella pertussis (BX470248) BP0837; hypothetical protein 3659628..3660062 Bordetella parapertussis 12822 1667766 NP_885558.1 CDS BPP3395 NC_002928.3 3660059 3660493 D ortholog of Bordetella pertussis (BX470248) BP0836; hypothetical protein 3660059..3660493 Bordetella parapertussis 12822 1667767 NP_885559.1 CDS BPP3396 NC_002928.3 3660477 3661280 R ortholog of Bordetella pertussis (BX470248) BP0835; hypothetical protein complement(3660477..3661280) Bordetella parapertussis 12822 1667768 NP_885560.1 CDS BPP3397 NC_002928.3 3661297 3662112 R ortholog of Bordetella pertussis (BX470248) BP0834; DNA repair exonuclease complement(3661297..3662112) Bordetella parapertussis 12822 1667769 NP_885561.1 CDS BPP3398 NC_002928.3 3662109 3663068 R ortholog of Bordetella pertussis (BX470248) BP0833; hypothetical protein complement(3662109..3663068) Bordetella parapertussis 12822 1667770 NP_885562.1 CDS BPP3399 NC_002928.3 3663113 3664009 R ortholog of Bordetella pertussis (BX470248) BP0832; Similar to many eg. Yersinia pestis similar to hypothetical transcriptional regulator ypo1934 SWALL:Q9ZC44 (EMBL:AL031866) (320 aa) fasta scores: E(): 2.9e-54, 52.17% id in 299 aa; LysR family transcriptional regulator complement(3663113..3664009) Bordetella parapertussis 12822 1667771 NP_885563.1 CDS betT NC_002928.3 3664037 3665995 R ortholog of Bordetella pertussis (BX470248) BP0831; high-affinity choline transport protein complement(3664037..3665995) Bordetella parapertussis 12822 1666597 NP_885564.1 CDS BPP3401 NC_002928.3 3666198 3666866 D ortholog of Bordetella pertussis (BX470248) BP0829; transcriptional regulator 3666198..3666866 Bordetella parapertussis 12822 1666598 NP_885565.1 CDS BPP3402 NC_002928.3 3666989 3668095 D ortholog of Bordetella pertussis (BX470248) BP0828; HlyD family secretion protein 3666989..3668095 Bordetella parapertussis 12822 1666599 NP_885566.1 CDS BPP3404 NC_002928.3 3671216 3672679 D ortholog of Bordetella pertussis (BX470248) BP0826; outer membrane component of multidrug efflux system 3671216..3672679 Bordetella parapertussis 12822 1666601 NP_885567.1 CDS BPP3405 NC_002928.3 3672694 3673365 D ortholog of Bordetella pertussis (BX470248) BP0825; hypothetical protein 3672694..3673365 Bordetella parapertussis 12822 1666602 NP_885568.1 CDS BPP3406 NC_002928.3 3673409 3673903 R ortholog of Bordetella pertussis (BX470248) BP0824; azurin complement(3673409..3673903) Bordetella parapertussis 12822 1666603 NP_885569.1 CDS BPP3407 NC_002928.3 3674052 3674699 R ortholog of Bordetella pertussis (BX470248) BP0823; transcriptional regulator complement(3674052..3674699) Bordetella parapertussis 12822 1666604 NP_885570.1 CDS hyuA NC_002928.3 3674803 3676851 D ortholog of Bordetella pertussis (BX470248) BP0822; hydantoin utilization protein A 3674803..3676851 Bordetella parapertussis 12822 1666605 NP_885571.1 CDS BPP3410 NC_002928.3 3678884 3680179 D ortholog of Bordetella pertussis (BX470248) BP0820; hypothetical protein 3678884..3680179 Bordetella parapertussis 12822 1667015 NP_885572.1 CDS BPP3411 NC_002928.3 3680288 3681280 D ortholog of Bordetella pertussis (BX470248) BP0819; hypothetical protein 3680288..3681280 Bordetella parapertussis 12822 1667016 NP_885573.1 CDS BPP3412 NC_002928.3 3681348 3683438 R ortholog of Bordetella pertussis (BX470248) BP0818; hypothetical protein complement(3681348..3683438) Bordetella parapertussis 12822 1667017 NP_885574.1 CDS BPP3413 NC_002928.3 3683463 3684503 R ortholog of Bordetella pertussis (BX470248) BP0817; hypothetical protein complement(3683463..3684503) Bordetella parapertussis 12822 1667018 NP_885575.1 CDS BPP3414 NC_002928.3 3684567 3685595 R ortholog of Bordetella pertussis (BX470248) BP0816; hypothetical protein complement(3684567..3685595) Bordetella parapertussis 12822 1667019 NP_885576.1 CDS metC NC_002928.3 3685599 3686840 R ortholog of Bordetella pertussis (BX470248) BP0815; cystathionine beta-lyase complement(3685599..3686840) Bordetella parapertussis 12822 1667020 NP_885577.1 CDS BPP3416 NC_002928.3 3686921 3687844 D ortholog of Bordetella pertussis (BX470248) BP0814; LysR family transcriptional regulator 3686921..3687844 Bordetella parapertussis 12822 1667021 NP_885578.1 CDS BPP3417 NC_002928.3 3687922 3688746 D ortholog of Bordetella pertussis (BX470248) BP0813; short-chain dehydrogenase 3687922..3688746 Bordetella parapertussis 12822 1667022 NP_885579.1 CDS BPP3418 NC_002928.3 3688944 3689927 R ortholog of Bordetella pertussis (BX470248) BP0810; hypothetical protein complement(3688944..3689927) Bordetella parapertussis 12822 1667023 NP_885580.1 CDS argH NC_002928.3 3689986 3691479 R ortholog of Bordetella pertussis (BX470248) BP0809; argininosuccinate lyase complement(3689986..3691479) Bordetella parapertussis 12822 1667024 NP_885581.1 CDS BPP3420 NC_002928.3 3691527 3692915 R ortholog of Bordetella pertussis (BX470248) BP0808; hypothetical protein complement(3691527..3692915) Bordetella parapertussis 12822 1665774 NP_885582.1 CDS BPP3421 NC_002928.3 3692946 3693935 R ortholog of Bordetella pertussis (BX470248) BP0807; hypothetical protein complement(3692946..3693935) Bordetella parapertussis 12822 1665775 NP_885583.1 CDS BPP3422 NC_002928.3 3694046 3695278 R ortholog of Bordetella pertussis (BX470248) BP0806; methylaspartate ammonia-lyase complement(3694046..3695278) Bordetella parapertussis 12822 1665776 NP_885584.1 CDS BPP3423 NC_002928.3 3695560 3696360 D ortholog of Bordetella pertussis (BX470248) BP0805; transcriptional regulator 3695560..3696360 Bordetella parapertussis 12822 1665777 NP_885585.1 CDS betT NC_002928.3 3696383 3698614 R ortholog of Bordetella pertussis (BX470248) BP0804; high-affinity choline transport protein complement(3696383..3698614) Bordetella parapertussis 12822 1665778 NP_885586.1 CDS secG NC_002928.3 3699485 3699949 R ortholog of Bordetella pertussis (BX470248) BP0802; preprotein translocase subunit SecG complement(3699485..3699949) Bordetella parapertussis 12822 1665779 NP_885587.1 CDS tpiA NC_002928.3 3699971 3700717 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(3699971..3700717) Bordetella parapertussis 12822 1665780 NP_885588.1 CDS BPP3427 NC_002928.3 3700862 3701839 R ortholog of Bordetella pertussis (BX470248) BP0800; zinc-binding dehydrogenase complement(3700862..3701839) Bordetella parapertussis 12822 1665781 NP_885589.1 CDS BPP3428 NC_002928.3 3702473 3703084 D ortholog of Bordetella pertussis (BX470248) BP0799; hypothetical protein 3702473..3703084 Bordetella parapertussis 12822 1665782 NP_885590.1 CDS tdcB NC_002928.3 3703078 3704295 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(3703078..3704295) Bordetella parapertussis 12822 1667397 NP_885591.1 CDS BPP3430 NC_002928.3 3704334 3705053 R ortholog of Bordetella pertussis (BX470248) BP0796; lipoprotein complement(3704334..3705053) Bordetella parapertussis 12822 1667398 NP_885592.1 CDS pnp NC_002928.3 3705174 3707333 R ortholog of Bordetella pertussis (BX470248) BP0795; polynucleotide phosphorylase/polyadenylase complement(3705174..3707333) Bordetella parapertussis 12822 1667399 NP_885593.1 CDS rpsO NC_002928.3 3707424 3707693 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(3707424..3707693) Bordetella parapertussis 12822 1667400 NP_885594.1 CDS BPP3433 NC_002928.3 3707987 3708514 D ortholog of Bordetella pertussis (BX470248) BP0793; lipoprotein 3707987..3708514 Bordetella parapertussis 12822 1667401 NP_885595.1 CDS pssA NC_002928.3 3708533 3709312 R ortholog of Bordetella pertussis (BX470248) BP0792; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(3708533..3709312) Bordetella parapertussis 12822 1667402 NP_885596.1 CDS ilvC NC_002928.3 3709480 3710496 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(3709480..3710496) Bordetella parapertussis 12822 1667403 NP_885597.1 CDS ilvH NC_002928.3 3710569 3711060 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(3710569..3711060) Bordetella parapertussis 12822 1667404 NP_885598.1 CDS ilvI NC_002928.3 3711071 3712786 R ortholog of Bordetella pertussis (BX470248) BP0789; acetolactate synthase large subunit complement(3711071..3712786) Bordetella parapertussis 12822 1667405 NP_885599.1 CDS BPP3438 NC_002928.3 3713257 3715485 D ortholog of Bordetella pertussis (BX470248) BP0787+BP2450; Similar to Ralstonia solanacearum probable transmembrane protein rsc2889 or rs00211 SWALL:Q8XVE2 (EMBL:AL646072) (740 aa) fasta scores: E(): 3.8e-28, 32.88% id in 663 aa; hypothetical protein 3713257..3715485 Bordetella parapertussis 12822 1666245 NP_885600.1 CDS BPP3439 NC_002928.3 3715492 3716733 R ortholog of Bordetella pertussis (BX470248) BP2451; membrane transport protein complement(3715492..3716733) Bordetella parapertussis 12822 1666246 NP_885601.1 CDS BPP3440 NC_002928.3 3716745 3717518 R ortholog of Bordetella pertussis (BX470248) BP2452; hypothetical protein complement(3716745..3717518) Bordetella parapertussis 12822 1666247 NP_885602.1 CDS BPP3441 NC_002928.3 3717545 3718327 R ortholog of Bordetella pertussis (BX470248) BP2454; oxidoreductase complement(3717545..3718327) Bordetella parapertussis 12822 1666248 NP_885603.1 CDS BPP3442 NC_002928.3 3718416 3719696 R ortholog of Bordetella pertussis (BX470248) BP2455; membrane efflux protein complement(3718416..3719696) Bordetella parapertussis 12822 1666249 NP_885604.1 CDS alcA NC_002928.3 3720307 3721692 D ortholog of Bordetella pertussis (BX470248) BP2456; alcaligin biosynthesis enzyme 3720307..3721692 Bordetella parapertussis 12822 1666250 NP_885605.1 CDS alcB NC_002928.3 3721711 3722316 D ortholog of Bordetella pertussis (BX470248) BP2457; alcaligin biosynthesis protein 3721711..3722316 Bordetella parapertussis 12822 1666920 NP_885606.1 CDS alcC NC_002928.3 3722313 3724169 D ortholog of Bordetella pertussis (BX470248) BP2458; alcaligin biosynthesis protein 3722313..3724169 Bordetella parapertussis 12822 1666921 NP_885607.1 CDS alcD NC_002928.3 3724166 3724966 D ortholog of Bordetella pertussis (BX470248) BP2459; hypothetical protein 3724166..3724966 Bordetella parapertussis 12822 1666922 NP_885608.1 CDS alcE NC_002928.3 3724981 3726174 D ortholog of Bordetella pertussis (BX470248) BP2460; iron-sulfur protein 3724981..3726174 Bordetella parapertussis 12822 1666923 NP_885609.1 CDS alcR NC_002928.3 3726212 3727216 D ortholog of Bordetella pertussis (BX470248) BP2461; transcriptional regulator 3726212..3727216 Bordetella parapertussis 12822 1666924 NP_885610.1 CDS bcr NC_002928.3 3727339 3728562 D ortholog of Bordetella pertussis (BX470248) BP2462; drug resistance translocase 3727339..3728562 Bordetella parapertussis 12822 1666925 NP_885611.1 CDS fauA NC_002928.3 3728674 3730878 D ortholog of Bordetella pertussis (BX470248) BP2463; ferric alcaligin siderophore receptor 3728674..3730878 Bordetella parapertussis 12822 1666926 NP_885612.1 CDS mar NC_002928.3 3731092 3731832 D ortholog of Bordetella pertussis (BX470248) BP2464; membrane efflux protein 3731092..3731832 Bordetella parapertussis 12822 1666927 NP_885613.1 CDS BPP3453 NC_002928.3 3732385 3733140 D ortholog of Bordetella pertussis (BX470248) BP2465; hypothetical protein 3732385..3733140 Bordetella parapertussis 12822 1666928 NP_885614.1 CDS BPP3454 NC_002928.3 3733156 3733317 R ortholog of Bordetella pertussis (BX470248) BP2466; No siginificant database matches; hypothetical protein complement(3733156..3733317) Bordetella parapertussis 12822 1666929 NP_885615.1 CDS BPP3455 NC_002928.3 3733486 3734001 D ortholog of Bordetella pertussis (BX470248) BP2467; hypothetical protein 3733486..3734001 Bordetella parapertussis 12822 1667897 NP_885616.1 CDS vrg-6 NC_002928.3 3734274 3734591 D ortholog of Bordetella pertussis (BX470248) BP2468; virulence protein 3734274..3734591 Bordetella parapertussis 12822 1667898 NP_885617.1 CDS BPP3457 NC_002928.3 3734650 3735870 R transposase for IS1001 element; transposase complement(3734650..3735870) Bordetella parapertussis 12822 1667899 NP_885618.1 CDS BPP3458 NC_002928.3 3736094 3736438 R ortholog of Bordetella pertussis (BX470248) BP2469; hypothetical protein complement(3736094..3736438) Bordetella parapertussis 12822 1667900 NP_885619.1 CDS BPP3459 NC_002928.3 3736621 3737976 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(3736621..3737976) Bordetella parapertussis 12822 1667901 NP_885620.1 CDS BPP3460 NC_002928.3 3738023 3739402 R ortholog of Bordetella pertussis (BX470248) BP2471; recombination factor protein RarA complement(3738023..3739402) Bordetella parapertussis 12822 1667902 NP_885621.1 CDS lolA NC_002928.3 3739465 3740097 R participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein complement(3739465..3740097) Bordetella parapertussis 12822 1667903 NP_885622.1 CDS ftsK NC_002928.3 3740097 3742457 R ortholog of Bordetella pertussis (BX470248) BP2473; cell division protein complement(3740097..3742457) Bordetella parapertussis 12822 1667904 NP_885623.1 CDS trxB NC_002928.3 3742472 3743458 D ortholog of Bordetella pertussis (BX470248) BP2474; thioredoxin reductase 3742472..3743458 Bordetella parapertussis 12822 1667905 NP_885624.1 CDS BPP3464 NC_002928.3 3743445 3744131 D ortholog of Bordetella pertussis (BX470248) BP2475; hypothetical protein 3743445..3744131 Bordetella parapertussis 12822 1667906 NP_885625.1 CDS BPP3465 NC_002928.3 3744128 3744460 D ortholog of Bordetella pertussis (BX470248) BP2476; mebrane transport protein 3744128..3744460 Bordetella parapertussis 12822 1667907 NP_885626.1 CDS BPP3466 NC_002928.3 3744474 3746540 R ortholog of Bordetella pertussis (BX470248) BP2478; membrane transport protein complement(3744474..3746540) Bordetella parapertussis 12822 1668232 NP_885627.1 CDS BPP3467 NC_002928.3 3746540 3746812 R ortholog of Bordetella pertussis (BX470248) BP2479; integral membrane protein complement(3746540..3746812) Bordetella parapertussis 12822 1668233 NP_885628.1 CDS kdpA NC_002928.3 3747594 3749378 D catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 3747594..3749378 Bordetella parapertussis 12822 1668234 NP_885629.1 CDS kdpB NC_002928.3 3749402 3751567 D ortholog of Bordetella pertussis (BX470248) BP2481; potassium-transporting ATPase B chain 3749402..3751567 Bordetella parapertussis 12822 1668235 NP_885630.1 CDS kdpC NC_002928.3 3751578 3752177 D One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 3751578..3752177 Bordetella parapertussis 12822 1667197 NP_885631.1 CDS kdpD NC_002928.3 3752195 3754990 D ortholog of Bordetella pertussis (BX470248) BP2483; two component sensor protein 3752195..3754990 Bordetella parapertussis 12822 1667198 NP_885632.1 CDS kdpE NC_002928.3 3754997 3755692 D ortholog of Bordetella pertussis (BX470248) BP2484; two component system transcriptional regulatory protein 3754997..3755692 Bordetella parapertussis 12822 1667199 NP_885633.1 CDS BPP3473 NC_002928.3 3755700 3756950 R ortholog of Bordetella pertussis (BX470248) BP2486; hypothetical protein complement(3755700..3756950) Bordetella parapertussis 12822 1667200 NP_885634.1 CDS BPP3474 NC_002928.3 3757100 3758005 R ortholog of Bordetella pertussis (BX470248) BP2487; hypothetical protein complement(3757100..3758005) Bordetella parapertussis 12822 1667201 NP_885635.1 CDS icd NC_002928.3 3758280 3759536 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(3758280..3759536) Bordetella parapertussis 12822 1667202 NP_885636.1 CDS BPP3476 NC_002928.3 3759739 3760164 D ortholog of Bordetella pertussis (BX470248) BP2489; hypothetical protein 3759739..3760164 Bordetella parapertussis 12822 1667203 NP_885637.1 CDS BPP3477 NC_002928.3 3760215 3760577 R ortholog of Bordetella pertussis (BX470248) BP2490; cytochrome complement(3760215..3760577) Bordetella parapertussis 12822 1667204 NP_885638.1 CDS BPP3478 NC_002928.3 3760590 3760943 R ortholog of Bordetella pertussis (BX470248) BP2491; cytochrome complement(3760590..3760943) Bordetella parapertussis 12822 1667265 NP_885639.1 CDS BPP3479 NC_002928.3 3761104 3761991 D ortholog of Bordetella pertussis (BX470248) BP2493; ATP-binding protein 3761104..3761991 Bordetella parapertussis 12822 1667266 NP_885640.1 CDS BPP3480 NC_002928.3 3762013 3763185 D ortholog of Bordetella pertussis (BX470248) BP2494; hypothetical protein 3762013..3763185 Bordetella parapertussis 12822 1667267 NP_885641.1 CDS BPP3481 NC_002928.3 3763189 3763743 R ortholog of Bordetella pertussis (BX470248) BP2495; hypothetical protein complement(3763189..3763743) Bordetella parapertussis 12822 1667268 NP_885642.1 CDS BPP3482 NC_002928.3 3763781 3764155 R ortholog of Bordetella pertussis (BX470248) BP2496; hypothetical protein complement(3763781..3764155) Bordetella parapertussis 12822 1667269 NP_885643.1 CDS BPP3483 NC_002928.3 3764488 3767238 D ortholog of Bordetella pertussis (BX470248) BP2497; zinc protease 3764488..3767238 Bordetella parapertussis 12822 1667270 NP_885644.1 CDS dnaJ NC_002928.3 3767429 3768562 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(3767429..3768562) Bordetella parapertussis 12822 1667271 NP_885645.1 CDS dnaK NC_002928.3 3768663 3770588 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(3768663..3770588) Bordetella parapertussis 12822 1667272 NP_885646.1 CDS BPP3486 NC_002928.3 3770679 3771059 R ortholog of Bordetella pertussis (BX470248) BP2500; thioredoxin complement(3770679..3771059) Bordetella parapertussis 12822 1664630 NP_885647.1 CDS BPP3487 NC_002928.3 3771067 3771621 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(3771067..3771621) Bordetella parapertussis 12822 1664631 NP_885648.1 CDS BPP3488 NC_002928.3 3771763 3772005 R ortholog of Bordetella pertussis (BX470248) BP2502; hypothetical protein complement(3771763..3772005) Bordetella parapertussis 12822 1664632 NP_885649.1 CDS hemH NC_002928.3 3772087 3773175 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(3772087..3773175) Bordetella parapertussis 12822 1664633 NP_885650.1 CDS hrcA NC_002928.3 3773233 3774237 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(3773233..3774237) Bordetella parapertussis 12822 1664634 NP_885651.1 CDS ppnK NC_002928.3 3774352 3775251 D catalyzes the phosphorylation of NAD to NADP; NAD(+)/NADH kinase 3774352..3775251 Bordetella parapertussis 12822 1664635 NP_885652.1 CDS BPP3492 NC_002928.3 3775267 3776928 D ortholog of Bordetella pertussis (BX470248) BP2506; DNA repair protein 3775267..3776928 Bordetella parapertussis 12822 1664636 NP_885653.1 CDS BPP3493 NC_002928.3 3776961 3778181 R transposase for IS1001 element; transposase complement(3776961..3778181) Bordetella parapertussis 12822 1664637 NP_885654.1 CDS fur NC_002928.3 3778318 3778737 R ortholog of Bordetella pertussis (BX470248) BP2507; ferric ion uptake regulator complement(3778318..3778737) Bordetella parapertussis 12822 1664638 NP_885655.1 CDS omlA NC_002928.3 3778888 3779436 D ortholog of Bordetella pertussis (BX470248) BP2508; outer membrane lipoprotein 3778888..3779436 Bordetella parapertussis 12822 1664639 NP_885656.1 CDS dapB NC_002928.3 3779437 3780246 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 3779437..3780246 Bordetella parapertussis 12822 1664640 NP_885657.1 CDS murB NC_002928.3 3780283 3781344 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(3780283..3781344) Bordetella parapertussis 12822 1664619 NP_885658.1 CDS BPP3498 NC_002928.3 3781657 3782448 R ortholog of Bordetella pertussis (BX470248) BP2511; hydrolase complement(3781657..3782448) Bordetella parapertussis 12822 1664620 NP_885659.1 CDS BPP3499 NC_002928.3 3782461 3783903 R ortholog of Bordetella pertussis (BX470248) BP2512; hypothetical protein complement(3782461..3783903) Bordetella parapertussis 12822 1664621 NP_885660.1 CDS BPP3500 NC_002928.3 3783913 3784944 R ortholog of Bordetella pertussis (BX470248) BP2513; hypothetical protein complement(3783913..3784944) Bordetella parapertussis 12822 1664622 NP_885661.1 CDS purU NC_002928.3 3784937 3785785 R ortholog of Bordetella pertussis (BX470248) BP2514; formyltetrahydrofolate deformylase complement(3784937..3785785) Bordetella parapertussis 12822 1664623 NP_885662.1 CDS soxG NC_002928.3 3785786 3786400 R ortholog of Bordetella pertussis (BX470248) BP2515; sarcosine oxidase subunit gamma complement(3785786..3786400) Bordetella parapertussis 12822 1664624 NP_885663.1 CDS soxA NC_002928.3 3786393 3789332 R ortholog of Bordetella pertussis (BX470248) BP2516; sarcosine oxidase subunit alpha complement(3786393..3789332) Bordetella parapertussis 12822 1664625 NP_885664.1 CDS soxD NC_002928.3 3789329 3789601 R ortholog of Bordetella pertussis (BX470248) BP2517; sarcosine oxidase subunit delta complement(3789329..3789601) Bordetella parapertussis 12822 1664626 NP_885665.1 CDS soxB NC_002928.3 3789612 3790865 R ortholog of Bordetella pertussis (BX470248) BP2518; sarcosine oxidase subunit beta complement(3789612..3790865) Bordetella parapertussis 12822 1664627 NP_885666.1 CDS BPP3506 NC_002928.3 3790997 3792172 D ortholog of Bordetella pertussis (BX470248) BP2519; dipeptidase 3790997..3792172 Bordetella parapertussis 12822 1664628 NP_885667.1 CDS BPP3507 NC_002928.3 3792240 3793283 D ortholog of Bordetella pertussis (BX470248) BP2520; LysR family regulatory protein 3792240..3793283 Bordetella parapertussis 12822 1664629 NP_885668.1 CDS BPP3508 NC_002928.3 3793280 3794308 D ortholog of Bordetella pertussis (BX470248) BP2521; dehydrogenase 3793280..3794308 Bordetella parapertussis 12822 1664610 NP_885669.1 CDS folD NC_002928.3 3794314 3795189 R ortholog of Bordetella pertussis (BX470248) BP2522; bifunctional protein [includes: methylenetetrahydrofolate dehydrogenase and methylenetetrahydrofolate cyclohydrolase] complement(3794314..3795189) Bordetella parapertussis 12822 1664611 NP_885670.1 CDS BPP3510 NC_002928.3 3795193 3796146 R ortholog of Bordetella pertussis (BX470248) BP2523; hypothetical protein complement(3795193..3796146) Bordetella parapertussis 12822 1664612 NP_885671.1 CDS BPP3511 NC_002928.3 3796533 3797765 R Similar to Agrobacterium tumefaciens L-carnitine dehydratase caib or atu2127 or agr_c_3858 SWALL:AAL43117 (EMBL:AE009163) (397 aa) fasta scores: E(): 3.1e-40, 34.35% id in 393 aa; hypothetical protein complement(3796533..3797765) Bordetella parapertussis 12822 1664613 NP_885672.1 CDS BPP3512 NC_002928.3 3797844 3798299 R Similar to Rhizobium loti probable monoamine oxidase regulatory protein mlr0905 SWALL:Q98LS1 (EMBL:AP002996) (150 aa) fasta scores: E(): 8.3e-29, 51.65% id in 151 aa, and to Streptomyces hygroscopicus varascomyceticus. Fkbr2 SWALL:Q9KIF1 (EMBL:AF235504) (175 aa) fasta scores: E(): 3.4e-20, 46.57% id in 146 aa; transcriptional regulator complement(3797844..3798299) Bordetella parapertussis 12822 1664614 NP_885673.1 CDS citE NC_002928.3 3798329 3799216 R Similar to Weissella paramesenteroides beta subunit of citrate lyase CitE SWALL:Q9RLT5 (EMBL:AJ132782) (304 aa) fasta scores: E(): 7.1e-22, 30.03% id in 293 aa, and to Klebsiella pneumoniae citrate lyase beta chain CitE SWALL:CILB_KLEPN (SWALL:P17725) (289 aa) fasta scores: E(): 1e-21, 31.37% id in 290 aa; citrate lyase complement(3798329..3799216) Bordetella parapertussis 12822 1664615 NP_885674.1 CDS BPP3514 NC_002928.3 3799369 3800181 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3799369..3800181) Bordetella parapertussis 12822 1664616 NP_885675.1 CDS BPP3515 NC_002928.3 3800223 3801230 R Similar to Rhizobium meliloti hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 6.4e-31, 34.54% id in 330 aa, and to Pseudomonas sp hypothetical 35.9 kDa protein in tcbd-tcbe intergenic region precursor SWALL:YTCB_PSESQ (SWALL:P27103) (336 aa) fasta scores: E(): 6.3e-26, 32.81% id in 320 aa; hypothetical protein complement(3800223..3801230) Bordetella parapertussis 12822 1664617 NP_885676.1 CDS BPP3516 NC_002928.3 3801552 3802520 R Similar to many eg. Ralstonia solanacearum probable transcription regulator protein rsp1267 or rs05312 SWALL:Q8XQG0 (EMBL:AL646083) (294 aa) fasta scores: E(): 7.8e-25, 32.42% id in 293 aa; transcriptional regulator complement(3801552..3802520) Bordetella parapertussis 12822 1664618 NP_885677.1 CDS BPP3517 NC_002928.3 3802911 3804287 D Similar to Xylella fastidiosa hypothetical protein Xf1738 SWALL:Q9PCP0 (EMBL:AE003997) (441 aa) fasta scores: E(): 3.4e-49, 38.77% id in 441 aa; inner membrane protein 3802911..3804287 Bordetella parapertussis 12822 1664597 NP_885678.1 CDS BPP3518 NC_002928.3 3804284 3805225 D Similar to Rhizobium meliloti probable oxidoreductase ra1172 or sma2157 SWALL:Q92XR9 (EMBL:AE007303) (327 aa) fasta scores: E(): 5.8e-33, 39.27% id in 303 aa, and to Streptomyces venezuelae aldo/keto reductase CmlT SWALL:AAM01215 (EMBL:AY026946) (292 aa) fasta scores: E(): 5.7e-09, 31.27% id in 275 aa; oxidoreductase 3804284..3805225 Bordetella parapertussis 12822 1664598 NP_885679.1 CDS BPP3519 NC_002928.3 3805475 3806530 D Similar to Rhizobium meliloti ABC transporter periplasmic solute-binding protein rb0039 or smb20036 SWALL:Q92XC3 (EMBL:AL603642) (338 aa) fasta scores: E(): 1.1e-32, 35.78% id in 327 aa; periplasmic solute-binding transport protein 3805475..3806530 Bordetella parapertussis 12822 1664599 NP_885680.1 CDS BPP3520 NC_002928.3 3806527 3807072 D Similar to Rhizobium meliloti small c4-dicarboxylate uptake permease rb1105 or smb20980 SWALL:Q92UM1 (EMBL:AL603646) (170 aa) fasta scores: E(): 0.019, 35.03% id in 137 aa; inner membrane protein 3806527..3807072 Bordetella parapertussis 12822 1664600 NP_885681.1 CDS BPP3521 NC_002928.3 3807069 3808343 D Similar to Bacillus halodurans C4-dicarboxylate transport system bh2671 SWALL:Q9K9H6 (EMBL:AP001516) (426 aa) fasta scores: E(): 8.6e-48, 38.15% id in 422 aa; inner membrane protein 3807069..3808343 Bordetella parapertussis 12822 1664601 NP_885682.1 CDS BPP3522 NC_002928.3 3808368 3809129 D Similar to Streptomyces coelicolor GntR-family transcriptional regulator scgd3.11C SWALL:Q9XA67 (EMBL:AL096822) (216 aa) fasta scores: E(): 3.1e-15, 31.84% id in 201 aa, and to Acinetobacter calcoaceticus transcriptional repressor MdcY mdcY SWALL:Q9F0Q8 (EMBL:AF209728) (224 aa) fasta scores: E(): 8.3e-10, 23.23% id in 198 aa; transcriptional regulator 3808368..3809129 Bordetella parapertussis 12822 1664602 NP_885683.1 CDS BPP3523 NC_002928.3 3809228 3810028 D Similar to Rhizobium loti 4-hydroxy-2-oxovalerate aldolase mll5426 SWALL:Q98BU2 (EMBL:AP003006) (264 aa) fasta scores: E(): 1.4e-20, 35.43% id in 254 aa, and to Escherichia coli 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH or HpaI SWALL:HPAI_ECOLI (SWALL:Q47098) (262 aa) fasta scores: E(): 3.3e-18, 33.46% id in 251 aa; aldolase 3809228..3810028 Bordetella parapertussis 12822 1664603 NP_885684.1 CDS BPP3524 NC_002928.3 3810055 3810960 D Similar to Methanosarcina acetivorans strC2A. dtdp-glucose 4,6-dehydratase ma4464 SWALL:AAM07805 (EMBL:AE011167) (298 aa) fasta scores: E(): 4.1e-13, 32.94% id in 258 aa; hypothetical protein 3810055..3810960 Bordetella parapertussis 12822 1664604 NP_885685.1 CDS BPP3525 NC_002928.3 3811067 3811813 D Similar to Agrobacterium tumefaciens hypothetical protein atu2702 or agr_c_4899 SWALL:AAL43683 (EMBL:AE009216) (248 aa) fasta scores: E(): 3.5e-33, 41.39% id in 244 aa, and to Streptomyces coelicolor integral membrane protein scbac14e8.02C SWALL:Q9ADJ7 (EMBL:AL590435) (255 aa) fasta scores: E(): 8.3e-20, 32.8% id in 253 aa; inner membrane protein 3811067..3811813 Bordetella parapertussis 12822 1664605 NP_885686.1 CDS BPP3526 NC_002928.3 3811900 3812715 D ortholog of Bordetella pertussis (BX470248) BP3110; MerR family transcriptional regulator 3811900..3812715 Bordetella parapertussis 12822 1664606 NP_885687.1 CDS BPP3527 NC_002928.3 3812848 3814287 D ortholog of Bordetella pertussis (BX470248) BP3109; hypothetical protein 3812848..3814287 Bordetella parapertussis 12822 1664607 NP_885688.1 CDS BPP3528 NC_002928.3 3814301 3814642 D ortholog of Bordetella pertussis (BX470248) BP3108; hypothetical protein 3814301..3814642 Bordetella parapertussis 12822 1664608 NP_885689.1 CDS BPP3529 NC_002928.3 3814697 3816454 D ortholog of Bordetella pertussis (BX470248) BP3107; gamma-glutamyltranspeptidase 3814697..3816454 Bordetella parapertussis 12822 1664609 NP_885690.1 CDS BPP3530 NC_002928.3 3816504 3817514 D ortholog of Bordetella pertussis (BX470248) BP3106; hypothetical protein 3816504..3817514 Bordetella parapertussis 12822 1665208 NP_885691.1 CDS BPP3531 NC_002928.3 3817647 3818420 D ortholog of Bordetella pertussis (BX470248) BP3105; molybdate-binding periplasmic protein 3817647..3818420 Bordetella parapertussis 12822 1665209 NP_885692.1 CDS BPP3532 NC_002928.3 3818495 3819103 D ortholog of Bordetella pertussis (BX470248) BP3104+BP3450; hypothetical protein 3818495..3819103 Bordetella parapertussis 12822 1665210 NP_885693.1 CDS BPP3533 NC_002928.3 3819587 3819931 D ortholog of Bordetella pertussis (BX470248) BP3449; hypothetical protein 3819587..3819931 Bordetella parapertussis 12822 1665211 NP_885694.1 CDS BPP3534 NC_002928.3 3819989 3820591 D ortholog of Bordetella pertussis (BX470248) BP3448; hypothetical protein 3819989..3820591 Bordetella parapertussis 12822 1665212 NP_885695.1 CDS BPP3535 NC_002928.3 3820609 3821010 R ortholog of Bordetella pertussis (BX470248) BP3447; hypothetical protein complement(3820609..3821010) Bordetella parapertussis 12822 1665213 NP_885696.1 CDS BPP3536 NC_002928.3 3821144 3822037 D ortholog of Bordetella pertussis (BX470248) BP3446; LysR family transcriptional regulator 3821144..3822037 Bordetella parapertussis 12822 1665214 NP_885697.1 CDS BPP3537 NC_002928.3 3822034 3822615 D ortholog of Bordetella pertussis (BX470248) BP3445; NUDIX hydrolase 3822034..3822615 Bordetella parapertussis 12822 1665215 NP_885698.1 CDS aat NC_002928.3 3822620 3823384 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 3822620..3823384 Bordetella parapertussis 12822 1665216 NP_885699.1 CDS BPP3539 NC_002928.3 3823412 3824146 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 3823412..3824146 Bordetella parapertussis 12822 1667668 NP_885700.1 CDS pyrD NC_002928.3 3824187 3825236 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 3824187..3825236 Bordetella parapertussis 12822 1667669 NP_885701.1 CDS BPP3541 NC_002928.3 3825384 3825962 R ortholog of Bordetella pertussis (BX470248) BP3441; hypothetical protein complement(3825384..3825962) Bordetella parapertussis 12822 1667670 NP_885702.1 CDS BPP3542 NC_002928.3 3826349 3827326 D ortholog of Bordetella pertussis (BX470248) BP3440; hypothetical protein 3826349..3827326 Bordetella parapertussis 12822 1667671 NP_885703.1 CDS dnt NC_002928.3 3827420 3831814 R ortholog of Bordetella pertussis (BX470248) BP3439; dermonecrotic toxin complement(3827420..3831814) Bordetella parapertussis 12822 1667672 NP_885704.1 CDS BPP3544 NC_002928.3 3832015 3832863 R ortholog of Bordetella pertussis (BX470248) BP3438; IclR family transcriptional regulator complement(3832015..3832863) Bordetella parapertussis 12822 1667673 NP_885705.1 CDS BPP3545 NC_002928.3 3833022 3833834 R ortholog of Bordetella pertussis (BX470248) BP3437; hypothetical protein complement(3833022..3833834) Bordetella parapertussis 12822 1667674 NP_885706.1 CDS BPP3546 NC_002928.3 3833889 3834689 R ortholog of Bordetella pertussis (BX470248) BP3393; inner membrane protein complement(3833889..3834689) Bordetella parapertussis 12822 1667675 NP_885707.1 CDS BPP3547 NC_002928.3 3834688 3835134 D ortholog of Bordetella pertussis (BX470248) BP3394; hypothetical protein 3834688..3835134 Bordetella parapertussis 12822 1667676 NP_885708.1 CDS BPP3548 NC_002928.3 3835146 3836579 R ortholog of Bordetella pertussis (BX470248) BP3395; ATP-dependent RNA helicase complement(3835146..3836579) Bordetella parapertussis 12822 1667677 NP_885709.1 CDS BPP3549 NC_002928.3 3836786 3837115 R ortholog of Bordetella pertussis (BX470248) BP3396; inner membrane protein complement(3836786..3837115) Bordetella parapertussis 12822 1667719 NP_885710.1 CDS BPP3550 NC_002928.3 3837118 3837720 R ortholog of Bordetella pertussis (BX470248) BP3397; inner membrane protein complement(3837118..3837720) Bordetella parapertussis 12822 1667720 NP_885711.1 CDS ilvE NC_002928.3 3837984 3838904 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3837984..3838904 Bordetella parapertussis 12822 1667721 NP_885712.1 CDS BPP3552 NC_002928.3 3838951 3839163 D ortholog of Bordetella pertussis (BX470248) BP3399; hypothetical protein 3838951..3839163 Bordetella parapertussis 12822 1667722 NP_885713.1 CDS BPP3553 NC_002928.3 3839186 3839608 D ortholog of Bordetella pertussis (BX470248) BP3400; hypothetical protein 3839186..3839608 Bordetella parapertussis 12822 1667723 NP_885714.1 CDS BPP3554 NC_002928.3 3839625 3840725 D ortholog of Bordetella pertussis (BX470248) BP3401; hypothetical protein 3839625..3840725 Bordetella parapertussis 12822 1667724 NP_885715.1 CDS BPP3555 NC_002928.3 3840822 3842339 R ortholog of Bordetella pertussis (BX470248) BP3402; hypothetical protein complement(3840822..3842339) Bordetella parapertussis 12822 1667725 NP_885716.1 CDS BPP3556 NC_002928.3 3842415 3843254 D ortholog of Bordetella pertussis (BX470248) BP3403; UTP--glucose-1-phosphate uridylyltransferase 3842415..3843254 Bordetella parapertussis 12822 1667726 NP_885717.1 CDS BPP3557 NC_002928.3 3843276 3844157 R ortholog of Bordetella pertussis (BX470248) BP3404; inner membrane protein complement(3843276..3844157) Bordetella parapertussis 12822 1667727 NP_885718.1 CDS ompQ NC_002928.3 3844239 3845333 R ortholog of Bordetella pertussis (BX470248) BP3405; outer membrane porin protein OmpQ complement(3844239..3845333) Bordetella parapertussis 12822 1667728 NP_885719.1 CDS BPP3559 NC_002928.3 3845591 3845950 R ortholog of Bordetella pertussis (BX470248) BP3409; hypothetical protein complement(3845591..3845950) Bordetella parapertussis 12822 1667729 NP_885720.1 CDS BPP3561 NC_002928.3 3847657 3848997 D ortholog of Bordetella pertussis (BX470248) BP3411; Xaa-Pro aminopeptidase 3847657..3848997 Bordetella parapertussis 12822 1667731 NP_885721.1 CDS BPP3562 NC_002928.3 3849007 3849459 R ortholog of Bordetella pertussis (BX470248) BP3412; inner membrane protein complement(3849007..3849459) Bordetella parapertussis 12822 1664868 NP_885722.1 CDS BPP3563 NC_002928.3 3849556 3850737 D ortholog of Bordetella pertussis (BX470248) BP3413; hypothetical protein 3849556..3850737 Bordetella parapertussis 12822 1664869 NP_885723.1 CDS BPP3564 NC_002928.3 3850797 3851828 D ortholog of Bordetella pertussis (BX470248) BP3414; hypothetical protein 3850797..3851828 Bordetella parapertussis 12822 1664870 NP_885724.1 CDS fis NC_002928.3 3851869 3852108 D ortholog of Bordetella pertussis (BX470248) BP3415; DNA-binding protein 3851869..3852108 Bordetella parapertussis 12822 1664871 NP_885725.1 CDS purH NC_002928.3 3852178 3853767 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3852178..3853767 Bordetella parapertussis 12822 1664872 NP_885726.1 CDS ruvC NC_002928.3 3853767 3854315 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 3853767..3854315 Bordetella parapertussis 12822 1664873 NP_885727.1 CDS ruvA NC_002928.3 3854396 3854968 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 3854396..3854968 Bordetella parapertussis 12822 1667345 NP_885728.1 CDS BPP3569 NC_002928.3 3854987 3855898 R ortholog of Bordetella pertussis (BX470248) BP3419; hypothetical protein complement(3854987..3855898) Bordetella parapertussis 12822 1667346 NP_885729.1 CDS BPP3570 NC_002928.3 3855974 3856942 R catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine; serine/threonine dehydratase complement(3855974..3856942) Bordetella parapertussis 12822 1667347 NP_885730.1 CDS ruvB NC_002928.3 3857065 3858138 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 3857065..3858138 Bordetella parapertussis 12822 1667348 NP_885731.1 CDS BPP3572 NC_002928.3 3858145 3859965 R ortholog of Bordetella pertussis (BX470248) BP3422; ATP-dependent DNA helicase complement(3858145..3859965) Bordetella parapertussis 12822 1667349 NP_885732.1 CDS BPP3573 NC_002928.3 3860042 3861520 R ortholog of Bordetella pertussis (BX470248) BP3221; hypothetical protein complement(3860042..3861520) Bordetella parapertussis 12822 1667350 NP_885733.1 CDS ompR NC_002928.3 3861651 3862352 D ortholog of Bordetella pertussis (BX470248) BP3222; transcriptional regulatory protein OmpR 3861651..3862352 Bordetella parapertussis 12822 1667351 NP_885734.1 CDS BPP3575 NC_002928.3 3862352 3863767 D ortholog of Bordetella pertussis (BX470248) BP3223; two-component sensor 3862352..3863767 Bordetella parapertussis 12822 1667352 NP_885735.1 CDS BPP3576 NC_002928.3 3863784 3864842 R ortholog of Bordetella pertussis (BX470248) BP3224; cytochrome oxidase complement(3863784..3864842) Bordetella parapertussis 12822 1667353 NP_885736.1 CDS BPP3577 NC_002928.3 3864839 3866230 R ortholog of Bordetella pertussis (BX470248) BP3225; transmembrane cytochrome oxidase complement(3864839..3866230) Bordetella parapertussis 12822 1667354 NP_885737.1 CDS glnS NC_002928.3 3866295 3868058 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 3866295..3868058 Bordetella parapertussis 12822 1665905 NP_885738.1 CDS minC NC_002928.3 3868170 3869048 D blocks the formation of polar Z-ring septums; septum formation inhibitor 3868170..3869048 Bordetella parapertussis 12822 1665906 NP_885739.1 CDS minD NC_002928.3 3869161 3869976 D ortholog of Bordetella pertussis (BX470248) BP3228; septum site-determining protein 3869161..3869976 Bordetella parapertussis 12822 1665907 NP_885740.1 CDS minE NC_002928.3 3869980 3870231 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 3869980..3870231 Bordetella parapertussis 12822 1665908 NP_885741.1 CDS osmB NC_002928.3 3870367 3870588 R ortholog of Bordetella pertussis (BX470248) BP3231; osmotically inducible lipoprotein B precursor complement(3870367..3870588) Bordetella parapertussis 12822 1665909 NP_885742.1 CDS BPP3583 NC_002928.3 3870786 3871325 R ortholog of Bordetella pertussis (BX470248) BP3232; hypothetical protein complement(3870786..3871325) Bordetella parapertussis 12822 1665910 NP_885743.1 CDS BPP3584 NC_002928.3 3871346 3873019 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(3871346..3873019) Bordetella parapertussis 12822 1665911 NP_885744.1 CDS BPP3585 NC_002928.3 3873114 3874031 R ortholog of Bordetella pertussis (BX470248) BP3234; hypothetical protein complement(3873114..3874031) Bordetella parapertussis 12822 1665912 NP_885745.1 CDS BPP3586 NC_002928.3 3874144 3874659 D ortholog of Bordetella pertussis (BX470248) BP3235; hypothetical protein 3874144..3874659 Bordetella parapertussis 12822 1665913 NP_885746.1 CDS BPP3587 NC_002928.3 3874780 3876261 D catalyzes the formation of indole-3-acetic acid from indole-3-acetamide; indole acetimide hydrolase 3874780..3876261 Bordetella parapertussis 12822 1665914 NP_885747.1 CDS BPP3588 NC_002928.3 3876394 3876891 D Similar to Streptomyces coelicolor hypothetical 17.7 kDa protein sc5h1.10C SWALL:Q9X7R8 (EMBL:AL049863) (160 aa) fasta scores: E(): 2.4e-28, 50.64% id in 156 aa; hypothetical protein 3876394..3876891 Bordetella parapertussis 12822 1665915 NP_885748.1 CDS BPP3589 NC_002928.3 3876904 3877896 R Similar to Rhizobium meliloti oligopeptide transport ATP-binding ABC transporter protein r02599 or smc02424 SWALL:Q92ML4 (EMBL:AL591791) (334 aa) fasta scores: E(): 8.9e-63, 60.42% id in 331 aa, and to Bacillus subtilis oligopeptide transport ATP-binding protein AppF SWALL:APPF_BACSU (SWALL:P42065) (329 aa) fasta scores: E(): 2.8e-51, 49.69% id in 326 aa; ABC transporter ATP-binding protein complement(3876904..3877896) Bordetella parapertussis 12822 1665508 NP_885749.1 CDS BPP3590 NC_002928.3 3877893 3878867 R Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase atu4700 or agr_l_360 SWALL:AAL45494 (EMBL:AE009398) (324 aa) fasta scores: E(): 3.5e-75, 68.67% id in 316 aa, and to Bacillus subtilis dipeptide transport ATP-binding protein DppD or DciaD SWALL:DPPD_BACSU (SWALL:P26905) (335 aa) fasta scores: E(): 3.6e-52, 48.91% id in 323 aa; ABC transporter ATP-binding protein complement(3877893..3878867) Bordetella parapertussis 12822 1665509 NP_885750.1 CDS BPP3591 NC_002928.3 3878875 3879789 R Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4697 or agr_l_366 SWALL:AAL45491 (EMBL:AE009398) (315 aa) fasta scores: E(): 5.1e-64, 55.96% id in 302 aa, and to Vibrio cholerae peptide ABC transporter, permease vc0173 SWALL:Q9KVH3 (EMBL:AE004107) (312 aa) fasta scores: E(): 1.8e-59, 50.33% id in 298 aa; binding-protein-dependent permease complement(3878875..3879789) Bordetella parapertussis 12822 1665510 NP_885751.1 CDS BPP3592 NC_002928.3 3879789 3880775 R ortholog of Bordetella pertussis (BX470248) BP3236; binding-protein-dependent permease complement(3879789..3880775) Bordetella parapertussis 12822 1665511 NP_885752.1 CDS BPP3593 NC_002928.3 3880855 3882426 R ortholog of Bordetella pertussis (BX470248) BP3237; binding-protein-dependent transport protein (periplasmic) complement(3880855..3882426) Bordetella parapertussis 12822 1665512 NP_885753.1 CDS BPP3594 NC_002928.3 3882544 3883479 R ortholog of Bordetella pertussis (BX470248) BP3238; glycosyl transferase family protein complement(3882544..3883479) Bordetella parapertussis 12822 1664922 NP_885754.1 CDS BPP3595 NC_002928.3 3883605 3884612 D ortholog of Bordetella pertussis (BX470248) BP3239; LysR family transcriptional regulator 3883605..3884612 Bordetella parapertussis 12822 1664923 NP_885755.1 CDS BPP3596 NC_002928.3 3884682 3884897 R ortholog of Bordetella pertussis (BX470248) BP3239A; hypothetical protein complement(3884682..3884897) Bordetella parapertussis 12822 1664924 NP_885756.1 CDS uvrA2 NC_002928.3 3885181 3890898 D ortholog of Bordetella pertussis (BX470248) BP3240; excinuclease ABC subunit 3885181..3890898 Bordetella parapertussis 12822 1664925 NP_885757.1 CDS BPP3598 NC_002928.3 3890904 3892031 D catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; aminodeoxychorismate synthase 3890904..3892031 Bordetella parapertussis 12822 1664926 NP_885758.1 CDS BPP3599 NC_002928.3 3892087 3892713 D ortholog of Bordetella pertussis (BX470248) BP3242; hypothetical protein 3892087..3892713 Bordetella parapertussis 12822 1664927 NP_885759.1 CDS BPP3600 NC_002928.3 3892885 3893595 R ortholog of Bordetella pertussis (BX470248) BP3244; oxidoreductase complement(3892885..3893595) Bordetella parapertussis 12822 1664928 NP_885760.1 CDS BPP3601 NC_002928.3 3893592 3894596 R ortholog of Bordetella pertussis (BX470248) BP3245; hypothetical protein complement(3893592..3894596) Bordetella parapertussis 12822 1664929 NP_885761.1 CDS BPP3602 NC_002928.3 3894692 3896323 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 3894692..3896323 Bordetella parapertussis 12822 1664930 NP_885762.1 CDS BPP3603 NC_002928.3 3896326 3897063 D ortholog of Bordetella pertussis (BX470248) BP3247; transcriptional regulator 3896326..3897063 Bordetella parapertussis 12822 1664952 NP_885763.1 CDS BPP3604 NC_002928.3 3897151 3898023 R ortholog of Bordetella pertussis (BX470248) BP3248; hypothetical protein complement(3897151..3898023) Bordetella parapertussis 12822 1664953 NP_885764.1 CDS BPP3605 NC_002928.3 3898292 3899512 D ortholog of Bordetella pertussis (BX470248) BP3249; inner membrane efflux protein 3898292..3899512 Bordetella parapertussis 12822 1664954 NP_885765.1 CDS BPP3606 NC_002928.3 3899509 3900168 D ortholog of Bordetella pertussis (BX470248) BP3250; hypothetical protein 3899509..3900168 Bordetella parapertussis 12822 1664955 NP_885766.1 CDS pdxH NC_002928.3 3900240 3900872 D ortholog of Bordetella pertussis (BX470248) BP3251; pyridoxamine 5'-phosphate oxidase 3900240..3900872 Bordetella parapertussis 12822 1664956 NP_885767.1 CDS BPP3608 NC_002928.3 3900902 3901420 D ortholog of Bordetella pertussis (BX470248) BP3252; monooxygenase component 3900902..3901420 Bordetella parapertussis 12822 1664957 NP_885768.1 CDS BPP3609 NC_002928.3 3901431 3902540 D ortholog of Bordetella pertussis (BX470248) BP3253; hypothetical protein 3901431..3902540 Bordetella parapertussis 12822 1664958 NP_885769.1 CDS purU NC_002928.3 3902587 3903441 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 3902587..3903441 Bordetella parapertussis 12822 1664959 NP_885770.1 CDS BPP3611 NC_002928.3 3903443 3904345 R ortholog of Bordetella pertussis (BX470248) BP3255; LysR family transcriptional regulator complement(3903443..3904345) Bordetella parapertussis 12822 1664960 NP_885771.1 CDS BPP3612 NC_002928.3 3904455 3906164 D ortholog of Bordetella pertussis (BX470248) BP3256+BP0255; oxidoreductase 3904455..3906164 Bordetella parapertussis 12822 1664961 NP_885772.1 CDS BPP3613 NC_002928.3 3906200 3907180 D ortholog of Bordetella pertussis (BX470248) BP0254; hypothetical protein 3906200..3907180 Bordetella parapertussis 12822 1666553 NP_885773.1 CDS BPP3614 NC_002928.3 3907194 3908318 D ortholog of Bordetella pertussis (BX470248) BP0253; hypothetical protein 3907194..3908318 Bordetella parapertussis 12822 1666554 NP_885774.1 CDS ggt NC_002928.3 3908326 3910080 R ortholog of Bordetella pertussis (BX470248) BP0252; gamma-glutamyltranspeptidase complement(3908326..3910080) Bordetella parapertussis 12822 1666555 NP_885775.1 CDS BPP3616 NC_002928.3 3910187 3911083 D ortholog of Bordetella pertussis (BX470248) BP0251; LysR family transcriptional regulator 3910187..3911083 Bordetella parapertussis 12822 1666556 NP_885776.1 CDS BPP3617 NC_002928.3 3911148 3912131 R ortholog of Bordetella pertussis (BX470248) BP0250; hypothetical protein complement(3911148..3912131) Bordetella parapertussis 12822 1666557 NP_885777.1 CDS BPP3618 NC_002928.3 3912267 3913247 D ortholog of Bordetella pertussis (BX470248) BP0249; hypothetical protein 3912267..3913247 Bordetella parapertussis 12822 1666558 NP_885778.1 CDS fumC NC_002928.3 3913264 3914655 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(3913264..3914655) Bordetella parapertussis 12822 1666559 NP_885779.1 CDS BPP3620 NC_002928.3 3914807 3915343 D ortholog of Bordetella pertussis (BX470248) BP0247; hypothetical protein 3914807..3915343 Bordetella parapertussis 12822 1666560 NP_885780.1 CDS amiC NC_002928.3 3915415 3916659 D ortholog of Bordetella pertussis (BX470248) BP0246; N-acetylmuramoyl-L-alanine amidase 3915415..3916659 Bordetella parapertussis 12822 1666840 NP_885781.1 CDS dedA NC_002928.3 3916802 3917440 R ortholog of Bordetella pertussis (BX470248) BP0245; hypothetical protein complement(3916802..3917440) Bordetella parapertussis 12822 1666841 NP_885782.1 CDS mutL NC_002928.3 3917527 3919416 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 3917527..3919416 Bordetella parapertussis 12822 1666842 NP_885783.1 CDS miaA NC_002928.3 3919413 3920354 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 3919413..3920354 Bordetella parapertussis 12822 1666843 NP_885784.1 CDS purM NC_002928.3 3920460 3921509 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(3920460..3921509) Bordetella parapertussis 12822 1666844 NP_885785.1 CDS BPP3626 NC_002928.3 3921717 3922463 D ortholog of Bordetella pertussis (BX470248) BP0241; DnaA regulatory inactivator Hda 3921717..3922463 Bordetella parapertussis 12822 1666845 NP_885786.1 CDS BPP3627 NC_002928.3 3922460 3923158 D ortholog of Bordetella pertussis (BX470248) BP0240; hypothetical protein 3922460..3923158 Bordetella parapertussis 12822 1666846 NP_885787.1 CDS pcnB NC_002928.3 3923159 3924514 D ortholog of Bordetella pertussis (BX470248) BP0239; poly(A) polymerase 3923159..3924514 Bordetella parapertussis 12822 1666847 NP_885788.1 CDS folK NC_002928.3 3924511 3925002 D ortholog of Bordetella pertussis (BX470248) BP0238; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3924511..3925002 Bordetella parapertussis 12822 1666848 NP_885789.1 CDS BPP3630 NC_002928.3 3925021 3925977 R ortholog of Bordetella pertussis (BX470248) BP0237; hypothetical protein complement(3925021..3925977) Bordetella parapertussis 12822 1666849 NP_885790.1 CDS BPP3631 NC_002928.3 3926004 3927398 R ortholog of Bordetella pertussis (BX470248) BP0236; hypothetical protein complement(3926004..3927398) Bordetella parapertussis 12822 1666850 NP_885791.1 CDS BPP3632 NC_002928.3 3927395 3929497 R ortholog of Bordetella pertussis (BX470248) BP0235; hypothetical protein complement(3927395..3929497) Bordetella parapertussis 12822 1666851 NP_885792.1 CDS BPP3633 NC_002928.3 3929668 3930708 D ortholog of Bordetella pertussis (BX470248) BP0234; solute-binding periplasmic protein 3929668..3930708 Bordetella parapertussis 12822 1666852 NP_885793.1 CDS BPP3634 NC_002928.3 3930752 3931495 D ortholog of Bordetella pertussis (BX470248) BP0233; GntR family transcriptional regulator 3930752..3931495 Bordetella parapertussis 12822 1666406 NP_885794.1 CDS pcaC NC_002928.3 3932507 3932917 R ortholog of Bordetella pertussis (BX470248) BP0231; 4-carboxymuconolactone decarboxylase complement(3932507..3932917) Bordetella parapertussis 12822 1666408 NP_885795.1 CDS BPP3637 NC_002928.3 3933045 3933872 D ortholog of Bordetella pertussis (BX470248) BP0230; hypothetical protein 3933045..3933872 Bordetella parapertussis 12822 1666409 NP_885796.1 CDS BPP3638 NC_002928.3 3933869 3934669 D ortholog of Bordetella pertussis (BX470248) BP0229; beta-D-hydroxybutyrate dehydrogenase 3933869..3934669 Bordetella parapertussis 12822 1666410 NP_885797.1 CDS BPP3639 NC_002928.3 3934722 3935636 D Similar to Salmonella typhi 2-hydroxy-3-oxopropionate reductase GarR or sty3430 SWALL:Q8Z3K1 (EMBL:AL627278) (294 aa) fasta scores: E(): 7.1e-26, 35.15% id in 293 aa, and to Escherichia coli 2-hydroxy-3-oxopropionate reductase GarR or b3125 SWALL:GARR_ECOLI (SWALL:P23523) (294 aa) fasta scores: E(): 2.8e-25, 35.15% id in 293 aa; 2-hydroxy-3-oxopropionate reductase 3934722..3935636 Bordetella parapertussis 12822 1666411 NP_885798.1 CDS BPP3640 NC_002928.3 3935633 3936433 D Similar to Yersinia pestis short chain oxidoreductase ypo1287 SWALL:Q8ZGK4 (EMBL:AJ414147) (271 aa) fasta scores: E(): 7e-21, 38.21% id in 246 aa, and to Streptomyces sphaeroides NovJ novJ SWALL:Q9L9F8 (EMBL:AF170880) (262 aa) fasta scores: E(): 5.3e-20, 36.4% id in 250 aa; oxidoreductase 3935633..3936433 Bordetella parapertussis 12822 1666412 NP_885799.1 CDS BPP3641 NC_002928.3 3936468 3937454 D Similar to Rhizobium meliloti hypothetical protein ra1058 ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.3e-45, 42.37% id in 328 aa, and to Variovorax paradoxus, and 2,4-diphenoxyacetic acid gene cluster SWALL:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 2.5e-41, 40.12% id in 314 aa; hypothetical protein 3936468..3937454 Bordetella parapertussis 12822 1666413 NP_885800.1 CDS BPP3642 NC_002928.3 3937488 3938402 R Similar to many eg. Escherichia coli hypothetical sugar kinase YihV or b3883 SWALL:YIHV_ECOLI (SWALL:P32143) (298 aa) fasta scores: E(): 2.1e-11, 33.44% id in 296 aa, and to Escherichia coli, and ribokinase RbsK or b3752 or z5253 or ecs4694 SWALL:RBSK_ECOLI (SWALL:P05054) (309 aa) fasta scores: E(): 7.6e-05, 24.11% id in 311 aa; sugar kinase complement(3937488..3938402) Bordetella parapertussis 12822 1666414 NP_885801.1 CDS BPP3643 NC_002928.3 3938406 3939245 R Similar to Pseudomonas aeruginosa probable acyl-CoA lyase beta chain pa0883 SWALL:Q9I562 (EMBL:AE004522) (275 aa) fasta scores: E(): 6.3e-54, 59.48% id in 274 aa, and to Homo sapiens citrate lyase beta subunit Clb SWALL:AAL84703 (EMBL:AF428253) (340 aa) fasta scores: E(): 3.8e-09, 28.81% id in 295 aa, and to Leuconostoc mesenteroides citrate lyase beta chain CitE SWALL:CILB_LEUMC (SWALL:O53078) (302 aa) fasta scores: E(): 0.00016, 32.86% id in 286 aa; citrate lyase subunit beta complement(3938406..3939245) Bordetella parapertussis 12822 1667931 NP_885802.1 CDS BPP3644 NC_002928.3 3939242 3940438 R Similar to Pseudomonas aeruginosa hypothetical protein Pa0882 SWALL:Q9I563 (EMBL:AE004522) (400 aa) fasta scores: E(): 5e-115, 76.33% id in 393 aa, and to Streptomyces coelicolor dehydratase SCE66.09 SWALL:Q9K3T4 (EMBL:AL359989) (391 aa) fasta scores: E(): 2.2e-91, 61.99% id in 392 aa; CAIB/BAIF family protein complement(3939242..3940438) Bordetella parapertussis 12822 1667932 NP_885803.1 CDS BPP3645 NC_002928.3 3940435 3941265 R Although not ubiquitous, this protein is conserved in prokaryotic and eukaryotic genomes. Similar to Pseudomonas aeruginosa hypothetical protein Pa0878 SWALL:Q9I567 (EMBL:AE004522) (275 aa) fasta scores: E(): 5.4e-68, 62.77% id in 274 aa, and to Schizosaccharomyces pombe hypothetical 34.7 kDa protein spbc1105.15C SWALL:Q9Y814 (EMBL:AL096851) (300 aa) fasta scores: E(): 8.8e-09, 27.5% id in 280 aa; hypothetical protein complement(3940435..3941265) Bordetella parapertussis 12822 1667933 NP_885804.1 CDS BPP3646 NC_002928.3 3941508 3943031 R Similar to Ralstonia solanacearum probable fumarate hydratase fuma or rsc1955 or rs03529 SWALL:Q8XY08 (EMBL:AL646067) (507 aa) fasta scores: E(): 1.3e-160, 78.34% id in 508 aa, and to Escherichia coli fumarate hydratase class i, aerobic fuma or b1612 SWALL:FUMA_ECOLI (SWALL:P00923) (547 aa) fasta scores: E(): 2.4e-28, 32.46% id in 462 aa; fumarate hydratase complement(3941508..3943031) Bordetella parapertussis 12822 1667934 NP_885805.1 CDS BPP3647 NC_002928.3 3943100 3943867 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3943100..3943867) Bordetella parapertussis 12822 1667935 NP_885806.1 CDS BPP3648 NC_002928.3 3944050 3945015 D Similar to Rhizobium meliloti hypothetical protein Ra1058 or sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.2e-40, 41.87% id in 320 aa; hypothetical protein 3944050..3945015 Bordetella parapertussis 12822 1667936 NP_885807.1 CDS BPP3649 NC_002928.3 3945037 3945816 D Similar to Ralstonia solanacearum DNA-binding transcriptional regulatory transcription regulator protein rsp0079 or rs05542 SWALL:Q8XTM7 (EMBL:AL646076) (273 aa) fasta scores: E(): 5.6e-30, 38.76% id in 258 aa; GntR family transcriptional regulator 3945037..3945816 Bordetella parapertussis 12822 1667937 NP_885808.1 CDS BPP3650 NC_002928.3 3945839 3947101 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 3945839..3947101 Bordetella parapertussis 12822 1667938 NP_885809.1 CDS BPP3651 NC_002928.3 3947098 3947613 D Interestingly more similar to proteins from extremophiles. Similar to Pyrococcus horikoshii 3-isopropylmalate dehydratase small subunit ph1724 SWALL:LEUD_PYRHO (SWALL:O59393) (163 aa) fasta scores: E(): 1.2e-20, 43.39% id in 159 aa, and to Azotobacter vinelandii 3-isopropylmalate dehydratase small subunit LeuD SWALL:LEUD_AZOVI (SWALL:P96196) (215 aa) fasta scores: E(): 4.8e-07, 35.44% id in 158 aa; 3-isopropylmalate dehydratase small subunit 3947098..3947613 Bordetella parapertussis 12822 1667939 NP_885810.1 CDS BPP3652 NC_002928.3 3947613 3948476 D Similar to Streptomyces hygroscopicus carboxyvinyl-carboxyphosphonate phosphorylmutase bcpA SWALL:CPPM_STRHY (SWALL:P11435) (294 aa) fasta scores: E(): 1.3e-33, 41.63% id in 257 aa; isocitrate lyase 3947613..3948476 Bordetella parapertussis 12822 1667940 NP_885811.1 CDS BPP3653 NC_002928.3 3948473 3949663 R ortholog of Bordetella pertussis (BX470248) BP0032; transporter complement(3948473..3949663) Bordetella parapertussis 12822 1667941 NP_885812.1 CDS glyQ NC_002928.3 3949890 3950864 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 3949890..3950864 Bordetella parapertussis 12822 1668306 NP_885813.1 CDS glyS NC_002928.3 3950866 3953004 D ortholog of Bordetella pertussis (BX470248) BP0034; glycyl-tRNA synthetase subunit beta 3950866..3953004 Bordetella parapertussis 12822 1668307 NP_885814.1 CDS BPP3656 NC_002928.3 3953001 3953540 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 3953001..3953540 Bordetella parapertussis 12822 1668308 NP_885815.1 CDS BPP3657 NC_002928.3 3953544 3954272 D ortholog of Bordetella pertussis (BX470248) BP0036; acyltransferase 3953544..3954272 Bordetella parapertussis 12822 1668309 NP_885816.1 CDS BPP3658 NC_002928.3 3954259 3955167 D ortholog of Bordetella pertussis (BX470248) BP0037; hypothetical protein 3954259..3955167 Bordetella parapertussis 12822 1668310 NP_885817.1 CDS gloA NC_002928.3 3955238 3955633 D ortholog of Bordetella pertussis (BX470248) BP0038; lactoylglutathione lyase 3955238..3955633 Bordetella parapertussis 12822 1668311 NP_885818.1 CDS def NC_002928.3 3955643 3956173 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3955643..3956173 Bordetella parapertussis 12822 1668312 NP_885819.2 CDS BPP3661 NC_002928.3 3956302 3958515 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(3956302..3958515) Bordetella parapertussis 12822 1668313 NP_885820.1 CDS BPP3662 NC_002928.3 3958658 3959887 D ortholog of Bordetella pertussis (BX470248) BP3334; hypothetical protein 3958658..3959887 Bordetella parapertussis 12822 1668314 NP_885821.1 CDS pykA NC_002928.3 3959890 3961332 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(3959890..3961332) Bordetella parapertussis 12822 1668315 NP_885822.1 CDS ksgA NC_002928.3 3962614 3963411 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(3962614..3963411) Bordetella parapertussis 12822 1665881 NP_885823.1 CDS BPP3666 NC_002928.3 3963436 3964995 R ortholog of Bordetella pertussis (BX470248) BP3330; peptidyl-prolyl cis-trans isomerase complement(3963436..3964995) Bordetella parapertussis 12822 1665882 NP_885824.1 CDS BPP3667 NC_002928.3 3964992 3967364 R ortholog of Bordetella pertussis (BX470248) BP3329; outer membrane (permeability) protein complement(3964992..3967364) Bordetella parapertussis 12822 1665883 NP_885825.1 CDS BPP3668 NC_002928.3 3967474 3968577 D ortholog of Bordetella pertussis (BX470248) BP3328; hypothetical protein 3967474..3968577 Bordetella parapertussis 12822 1665884 NP_885826.1 CDS BPP3669 NC_002928.3 3968577 3969269 D ortholog of Bordetella pertussis (BX470248) BP3327; nucleotidyl transferase 3968577..3969269 Bordetella parapertussis 12822 1665885 NP_885827.1 CDS BPP3670 NC_002928.3 3969413 3970114 D ortholog of Bordetella pertussis (BX470248) BP3326; inner membrane protein 3969413..3970114 Bordetella parapertussis 12822 1665886 NP_885828.1 CDS phhB NC_002928.3 3970099 3970476 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(3970099..3970476) Bordetella parapertussis 12822 1665887 NP_885829.1 CDS BPP3672 NC_002928.3 3970500 3971126 R ortholog of Bordetella pertussis (BX470248) BP3324; Similar to Porphyromonas gingivalis immunogenic 23 kDa lipoprotein pg3 SWALL:Q9XCA4 (EMBL:AF145799) (223 aa) fasta scores: E(): 1e-18, 40.68% id in 204 aa; outer membrane protein complement(3970500..3971126) Bordetella parapertussis 12822 1665888 NP_885830.1 CDS BPP3673 NC_002928.3 3971261 3972133 R ortholog of Bordetella pertussis (BX470248) BP0718; carboxyvinyl-carboxyphosphonate phosphorylmutase complement(3971261..3972133) Bordetella parapertussis 12822 1665889 NP_885831.1 CDS BPP3674 NC_002928.3 3972474 3972692 D ortholog of Bordetella pertussis (BX470248) BP0720; hypothetical protein 3972474..3972692 Bordetella parapertussis 12822 1665890 NP_885832.1 CDS BPP3675 NC_002928.3 3972732 3974111 R ortholog of Bordetella pertussis (BX470248) BP0721; aminotransferase complement(3972732..3974111) Bordetella parapertussis 12822 1665891 NP_885833.1 CDS BPP3676 NC_002928.3 3974153 3975550 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(3974153..3975550) Bordetella parapertussis 12822 1665892 NP_885834.1 CDS BPP3677 NC_002928.3 3975590 3977242 R ortholog of Bordetella pertussis (BX470248) BP0723; ABC transporter ATP-binding protein complement(3975590..3977242) Bordetella parapertussis 12822 1666646 NP_885835.1 CDS BPP3678 NC_002928.3 3977246 3978130 R ortholog of Bordetella pertussis (BX470248) BP0724; ABC transporter permease complement(3977246..3978130) Bordetella parapertussis 12822 1666647 NP_885836.1 CDS BPP3680 NC_002928.3 3979151 3980770 R ortholog of Bordetella pertussis (BX470248) BP0726; ABC transporter periplasmic-binding protein complement(3979151..3980770) Bordetella parapertussis 12822 1666649 NP_885837.1 CDS BPP3681 NC_002928.3 3980937 3981752 D ortholog of Bordetella pertussis (BX470248) BP0727; transcriptional regulator 3980937..3981752 Bordetella parapertussis 12822 1666650 NP_885838.1 CDS BPP3682 NC_002928.3 3981820 3982389 R ortholog of Bordetella pertussis (BX470248) BP0728; transcriptional regulator complement(3981820..3982389) Bordetella parapertussis 12822 1666651 NP_885839.1 CDS nspC NC_002928.3 3982946 3984043 D ortholog of Bordetella pertussis (BX470248) BP0731; carboxynorspermidine decarboxylase 3982946..3984043 Bordetella parapertussis 12822 1666652 NP_885840.1 CDS BPP3685 NC_002928.3 3984077 3985342 D ortholog of Bordetella pertussis (BX470248) BP0732; hypothetical protein 3984077..3985342 Bordetella parapertussis 12822 1666653 NP_885841.1 CDS BPP3686 NC_002928.3 3985398 3985886 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas aeruginosa this extracytoplasmic function sigma factor may be involved in the transcription of the ferric pyoverdine receptor gene, fpvA.; RNA polymerase sigma factor complement(3985398..3985886) Bordetella parapertussis 12822 1666654 NP_885842.1 CDS BPP3687 NC_002928.3 3986017 3986988 D ortholog of Bordetella pertussis (BX470248) BP0737; inner membrane sensor for iron transport 3986017..3986988 Bordetella parapertussis 12822 1666470 NP_885843.1 CDS bfrF NC_002928.3 3987108 3989552 D ortholog of Bordetella pertussis (BX470248) BP0736; ferric siderophore receptor 3987108..3989552 Bordetella parapertussis 12822 1666471 NP_885844.1 CDS BPP3689 NC_002928.3 3989568 3990158 R ortholog of Bordetella pertussis (BX470248) BP0735; hypothetical protein complement(3989568..3990158) Bordetella parapertussis 12822 1666472 NP_885845.1 CDS BPP3690 NC_002928.3 3990248 3991210 R Appears to have two distinct portions. C-terminal region similar to regulators eg. Yersinia pestis regulator of nucleoside diphosphate kinase Rnk or ypo3695 SWALL:Q8ZAU1 (EMBL:AJ414158) (136 aa) fasta scores: E(): 1.4e-10, 38.97% id in 136 aa, and to Escherichia coli O157:H7 regulator of nucleoside diphosphate kinase Rnk or b0610 or z0754 or ecs0649 SWALL:RNK_ECOLI (SWALL:P40679) (136 aa) fasta scores: E(): 5.8e-09, 38.16% id in 131 aa. N-terminal region similar to predicted acetyltransferase eg. Streptomyces coelicolor acetyltransferase sc6g4.29 SWALL:O86792 (EMBL:AL031317) (177 aa) fasta scores: E(): 0.16, 30.07% id in 133 aa; enzyme-regulator fusion protein complement(3990248..3991210) Bordetella parapertussis 12822 1666473 NP_885846.1 CDS BPP3691 NC_002928.3 3991445 3992761 D Similar to Pseudomonas sp. CA10 large subunit of terminal oxygenase component SWALL:Q9AQN3 (EMBL:AB047548) (443 aa) fasta scores: E(): 1.8e-46, 31.96% id in 438 aa, and to Escherichia coli O157:H7 3-phenylpropionate dioxygenase alpha subunit hcae or phdc1 or hcaa or hcaa1 or diga or b2538 or z3809 or ecs3404 SWALL:HCAE_ECOLI (SWALL:Q47139) (453 aa) fasta scores: E(): 1.4e-34, 28.91% id in 453 aa; ring-hydroxylating dioxygenase large subunit 3991445..3992761 Bordetella parapertussis 12822 1666474 NP_885847.1 CDS BPP3692 NC_002928.3 3992767 3993288 D Similar to Burkholderia sp. RP007 aromatic 1,2-dioxygenase beta subunit PhnY SWALL:Q9RB87 (EMBL:AF112137) (197 aa) fasta scores: E(): 1.7e-18, 44.37% id in 151 aa, and to Acinetobacter calcoaceticus benzoate 1,2-dioxygenase beta subunit BenB SWALL:BENB_ACICA (SWALL:P07770) (169 aa) fasta scores: E(): 5.5e-08, 27.16% id in 162 aa; ring-hydroxylating dioxygenase small subunit 3992767..3993288 Bordetella parapertussis 12822 1666475 NP_885848.1 CDS BPP3693 NC_002928.3 3993417 3994391 R Similar to Escherichia coli, and Escherichia coli O157:H7 glycine cleavage system transcriptional activator GcvA or b2808 or z4125 or ecs3668 SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 1.7e-15, 36.82% id in 315 aa; LysR family transcriptional regulator complement(3993417..3994391) Bordetella parapertussis 12822 1666476 NP_885849.1 CDS BPP3694 NC_002928.3 3994657 3995676 D Similar to Variovorax paradoxus, and Burkholderia cepacia 2,4-diphenoxyacetic acid gene cluster SWALL:Q9RHQ7 (EMBL:AB028643) (337 aa) fasta scores: E(): 1.2e-30, 36.42% id in 291 aa; hypothetical protein 3994657..3995676 Bordetella parapertussis 12822 1666477 NP_885850.1 CDS BPP3695 NC_002928.3 3995683 3996513 D Similar to Rhodococcus sp Etbd1 SWALL:O82828 (EMBL:AB004320) (274 aa) fasta scores: E(): 4.8e-29, 35.38% id in 260 aa, and to Pseudomonas sp. 2-hydroxymuconic semialdehyde hydrolase DmpD SWALL:DMPD_PSESP (SWALL:P19076) (283 aa) fasta scores: E(): 3.9e-28, 33.2% id in 262 aa; hydrolase 3995683..3996513 Bordetella parapertussis 12822 1666478 NP_885851.1 CDS BPP3696 NC_002928.3 3996558 3996974 D Similar to many eg. Streptomyces coelicolor conserved hypothetical protein sc9c7.14C SWALL:Q9ZBJ6 (EMBL:AL035161) (132 aa) fasta scores: E(): 1.8e-08, 35.55% id in 135 aa; hypothetical protein 3996558..3996974 Bordetella parapertussis 12822 1666479 NP_885852.1 CDS BPP3697 NC_002928.3 3996987 3998021 D similar to the 3-(2,3-dihydroxyphenyl)propionate dioxygenase from E. coli; dioxygenase 3996987..3998021 Bordetella parapertussis 12822 1667790 NP_885853.1 CDS BPP3698 NC_002928.3 3998018 3998899 D Similar to many predicted enzymes eg. Bacillus halodurans 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase bh2000 SWALL:Q9KBC8 (EMBL:AP001514) (319 aa) fasta scores: E(): 1.2e-31, 41.72% id in 290 aa, and to Streptomyces coelicolor 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase SCF41.05 SWALL:Q9RJW4 (EMBL:AL117387) (292 aa) fasta scores: E(): 4.2e-25, 37.96% id in 295 aa; hypothetical protein 3998018..3998899 Bordetella parapertussis 12822 1667791 NP_885854.1 CDS BPP3699 NC_002928.3 3999181 3999474 D Some similarity to Pseudomonas putida hypothetical 22.4 kDa protein SWALL:Q9R9U3 (EMBL:AJ245436) (199 aa) fasta scores: E(): 3.7e-15, 74.62% id in 67 aa; hypothetical protein 3999181..3999474 Bordetella parapertussis 12822 1667792 NP_885855.1 CDS BPP3700 NC_002928.3 3999504 4000475 D ortholog of Bordetella pertussis (BX470248) BP2847; No significant database matches; hypothetical protein 3999504..4000475 Bordetella parapertussis 12822 1667793 NP_885856.1 CDS BPP3701 NC_002928.3 4000484 4001659 D ortholog of Bordetella pertussis (BX470248) BP2846; hypothetical protein 4000484..4001659 Bordetella parapertussis 12822 1667794 NP_885857.1 CDS BPP3702 NC_002928.3 4001656 4003299 D ortholog of Bordetella pertussis (BX470248) BP2843; No significant database matches; hypothetical protein 4001656..4003299 Bordetella parapertussis 12822 1667795 NP_885858.1 CDS BPP3703 NC_002928.3 4003338 4003490 R ortholog of Bordetella pertussis (BX470248) BP2842; No significant database matches. Contains an internal deletion relative to B.bronchiseptica gene.; hypothetical protein complement(4003338..4003490) Bordetella parapertussis 12822 1667796 NP_885859.1 CDS BPP3704 NC_002928.3 4003808 4004548 R ortholog of Bordetella pertussis (BX470248) BP2841; short-chain dehydrogenase complement(4003808..4004548) Bordetella parapertussis 12822 1667797 NP_885860.1 CDS BPP3705 NC_002928.3 4004652 4005272 D ortholog of Bordetella pertussis (BX470248) BP2840; TetR family transcriptional regulator 4004652..4005272 Bordetella parapertussis 12822 1667798 NP_885861.1 CDS BPP3706 NC_002928.3 4005274 4007484 R ortholog of Bordetella pertussis (BX470248) BP2839; hypothetical protein complement(4005274..4007484) Bordetella parapertussis 12822 1667799 NP_885862.1 CDS BPP3707 NC_002928.3 4007629 4008288 R ortholog of Bordetella pertussis (BX470248) BP2838; hydrolase complement(4007629..4008288) Bordetella parapertussis 12822 1667800 NP_885863.1 CDS BPP3708 NC_002928.3 4008320 4008784 R ortholog of Bordetella pertussis (BX470248) BP2837; MerR family transcriptional regulator complement(4008320..4008784) Bordetella parapertussis 12822 1667801 NP_885864.1 CDS BPP3709 NC_002928.3 4009297 4010049 R ortholog of Bordetella pertussis (BX470248) BP2836; DNA-binding protein complement(4009297..4010049) Bordetella parapertussis 12822 1667802 NP_885865.1 CDS BPP3710 NC_002928.3 4010056 4011318 R ortholog of Bordetella pertussis (BX470248) BP2835; ABC transport protein solute-binding protein complement(4010056..4011318) Bordetella parapertussis 12822 1667803 NP_885866.1 CDS BPP3711 NC_002928.3 4011360 4012622 R ortholog of Bordetella pertussis (BX470248) BP2833; hypothetical protein complement(4011360..4012622) Bordetella parapertussis 12822 1667804 NP_885867.1 CDS BPP3712 NC_002928.3 4012627 4013754 R ortholog of Bordetella pertussis (BX470248) BP2832; ABC transporter ATP-binding protein complement(4012627..4013754) Bordetella parapertussis 12822 1667805 NP_885868.1 CDS BPP3713 NC_002928.3 4013765 4014592 R ortholog of Bordetella pertussis (BX470248) BP2831; ABC transport protein, inner membrane component complement(4013765..4014592) Bordetella parapertussis 12822 1667999 NP_885869.1 CDS BPP3715 NC_002928.3 4015443 4016816 R ortholog of Bordetella pertussis (BX470248) BP2828; hypothetical protein complement(4015443..4016816) Bordetella parapertussis 12822 1668001 NP_885870.1 CDS BPP3716 NC_002928.3 4016813 4017217 R ortholog of Bordetella pertussis (BX470248) BP2827; hypothetical protein complement(4016813..4017217) Bordetella parapertussis 12822 1668002 NP_885871.1 CDS BPP3718 NC_002928.3 4018587 4019297 D ortholog of Bordetella pertussis (BX470248) BP2825; GntR family transcriptional regulator 4018587..4019297 Bordetella parapertussis 12822 1668004 NP_885872.1 CDS BPP3719 NC_002928.3 4019294 4020538 D ortholog of Bordetella pertussis (BX470248) BP2824; hypothetical protein 4019294..4020538 Bordetella parapertussis 12822 1668005 NP_885873.1 CDS BPP3720 NC_002928.3 4020540 4020974 D ortholog of Bordetella pertussis (BX470248) BP2823; hypothetical protein 4020540..4020974 Bordetella parapertussis 12822 1668006 NP_885874.1 CDS BPP3721 NC_002928.3 4021003 4021308 D ortholog of Bordetella pertussis (BX470248) BP2822; hypothetical protein 4021003..4021308 Bordetella parapertussis 12822 1668007 NP_885875.1 CDS BPP3722 NC_002928.3 4021366 4022514 R ortholog of Bordetella pertussis (BX470248) BP2820; alcohol dehydrogenase complement(4021366..4022514) Bordetella parapertussis 12822 1668008 NP_885876.1 CDS BPP3723 NC_002928.3 4023013 4023810 R ortholog of Bordetella pertussis (BX470248) BP2818; hypothetical protein complement(4023013..4023810) Bordetella parapertussis 12822 1665621 NP_885877.1 CDS BPP3724 NC_002928.3 4023858 4024457 R ortholog of Bordetella pertussis (BX470248) BP2817; ABC transporter inner membrane protein complement(4023858..4024457) Bordetella parapertussis 12822 1665622 NP_885878.1 CDS BPP3725 NC_002928.3 4024468 4025556 R ortholog of Bordetella pertussis (BX470248) BP2816; ABC transporter ATP-binding protein complement(4024468..4025556) Bordetella parapertussis 12822 1665623 NP_885879.1 CDS BPP3726 NC_002928.3 4025721 4027946 R ortholog of Bordetella pertussis (BX470248) BP2815; hypothetical protein complement(4025721..4027946) Bordetella parapertussis 12822 1665624 NP_885880.1 CDS BPP3727 NC_002928.3 4028241 4030139 R ortholog of Bordetella pertussis (BX470248) BP2814; hypothetical protein complement(4028241..4030139) Bordetella parapertussis 12822 1665625 NP_885881.1 CDS BPP3728 NC_002928.3 4030270 4031163 D ortholog of Bordetella pertussis (BX470248) BP2813; inositol monophosphatase-family protein 4030270..4031163 Bordetella parapertussis 12822 1665626 NP_885882.1 CDS fadD2 NC_002928.3 4031182 4032873 R ortholog of Bordetella pertussis (BX470248) BP2811; long-chain-fatty-acid--CoA ligase complement(4031182..4032873) Bordetella parapertussis 12822 1665627 NP_885883.1 CDS BPP3730 NC_002928.3 4032935 4034131 D ortholog of Bordetella pertussis (BX470248) BP2810; hydrolase 4032935..4034131 Bordetella parapertussis 12822 1665628 NP_885884.1 CDS BPP3731 NC_002928.3 4034145 4035023 R ortholog of Bordetella pertussis (BX470248) BP2809; transcriptional regulator complement(4034145..4035023) Bordetella parapertussis 12822 1665629 NP_885885.1 CDS BPP3732 NC_002928.3 4035130 4036176 D ortholog of Bordetella pertussis (BX470248) BP2808; integral membrane protein 4035130..4036176 Bordetella parapertussis 12822 1665240 NP_885886.1 CDS BPP3733 NC_002928.3 4036240 4036650 D ortholog of Bordetella pertussis (BX470248) BP2807; thioesterase 4036240..4036650 Bordetella parapertussis 12822 1665241 NP_885887.1 CDS BPP3734 NC_002928.3 4036661 4038133 D ortholog of Bordetella pertussis (BX470248) BP2806; cation transport protein 4036661..4038133 Bordetella parapertussis 12822 1665242 NP_885888.1 CDS pagP NC_002928.3 4038239 4038787 D catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 4038239..4038787 Bordetella parapertussis 12822 1665243 NP_885889.1 CDS BPP3736 NC_002928.3 4038784 4039392 R ortholog of Bordetella pertussis (BX470248) BP3007; hypothetical protein complement(4038784..4039392) Bordetella parapertussis 12822 1665244 NP_885890.1 CDS grp NC_002928.3 4039574 4040044 R ortholog of Bordetella pertussis (BX470248) BP3008; glutamate uptake regulatory protein complement(4039574..4040044) Bordetella parapertussis 12822 1665245 NP_885891.1 CDS BPP3738 NC_002928.3 4040051 4041346 R ortholog of Bordetella pertussis (BX470248) BP3009; D-amino acid dehydrogenase small subunit complement(4040051..4041346) Bordetella parapertussis 12822 1665246 NP_885892.1 CDS BPP3739 NC_002928.3 4041431 4042210 R ortholog of Bordetella pertussis (BX470248) BP3010; oxidoreductase complement(4041431..4042210) Bordetella parapertussis 12822 1665247 NP_885893.1 CDS BPP3740 NC_002928.3 4042325 4042879 D ortholog of Bordetella pertussis (BX470248) BP3011; hypothetical protein 4042325..4042879 Bordetella parapertussis 12822 1665248 NP_885894.1 CDS BPP3741 NC_002928.3 4042889 4043872 R ortholog of Bordetella pertussis (BX470248) BP3012; hypothetical protein complement(4042889..4043872) Bordetella parapertussis 12822 1665249 NP_885895.1 CDS BPP3742 NC_002928.3 4044052 4044771 R ortholog of Bordetella pertussis (BX470248) BP3013; hypothetical protein complement(4044052..4044771) Bordetella parapertussis 12822 1666117 NP_885896.1 CDS secA NC_002928.3 4044788 4047523 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(4044788..4047523) Bordetella parapertussis 12822 1666118 NP_885897.1 CDS BPP3744 NC_002928.3 4047703 4048704 R ortholog of Bordetella pertussis (BX470248) BP3015; M23/M37 family peptidase complement(4047703..4048704) Bordetella parapertussis 12822 1666119 NP_885898.1 CDS BPP3745 NC_002928.3 4048731 4049225 D ortholog of Bordetella pertussis (BX470248) BP3016; hypothetical protein 4048731..4049225 Bordetella parapertussis 12822 1666120 NP_885899.1 CDS lpxC NC_002928.3 4049337 4050260 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(4049337..4050260) Bordetella parapertussis 12822 1666121 NP_885900.1 CDS ftsZ NC_002928.3 4050489 4051673 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(4050489..4051673) Bordetella parapertussis 12822 1666122 NP_885901.1 CDS ftsA NC_002928.3 4051862 4053088 R ortholog of Bordetella pertussis (BX470248) BP3019; cell division protein FtsA complement(4051862..4053088) Bordetella parapertussis 12822 1666123 NP_885902.1 CDS ftsQ NC_002928.3 4053093 4053914 R ortholog of Bordetella pertussis (BX470248) BP3020; cell division protein FtsQ complement(4053093..4053914) Bordetella parapertussis 12822 1666124 NP_885903.1 CDS ddl NC_002928.3 4053927 4054877 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(4053927..4054877) Bordetella parapertussis 12822 1666125 NP_885904.1 CDS murC NC_002928.3 4054874 4056280 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(4054874..4056280) Bordetella parapertussis 12822 1666126 NP_885905.1 CDS murG NC_002928.3 4056277 4057350 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(4056277..4057350) Bordetella parapertussis 12822 1667659 NP_885906.1 CDS ftsW NC_002928.3 4057347 4058540 R ortholog of Bordetella pertussis (BX470248) BP3024; cell division protein FtsW complement(4057347..4058540) Bordetella parapertussis 12822 1667660 NP_885907.1 CDS murD NC_002928.3 4058537 4060063 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(4058537..4060063) Bordetella parapertussis 12822 1667661 NP_885908.1 CDS mraY NC_002928.3 4060060 4061193 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(4060060..4061193) Bordetella parapertussis 12822 1667662 NP_885909.1 CDS murE NC_002928.3 4061219 4064056 R ortholog of Bordetella pertussis (BX470248) BP3027; bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase complement(4061219..4064056) Bordetella parapertussis 12822 1667663 NP_885910.1 CDS ftsI NC_002928.3 4064053 4065783 R ortholog of Bordetella pertussis (BX470248) BP3028; peptidoglycan synthetase complement(4064053..4065783) Bordetella parapertussis 12822 1667664 NP_885911.1 CDS ftsL NC_002928.3 4065780 4066058 R ortholog of Bordetella pertussis (BX470248) BP3029; cell division protein complement(4065780..4066058) Bordetella parapertussis 12822 1667665 NP_885912.1 CDS mraW NC_002928.3 4066058 4067152 R ortholog of Bordetella pertussis (BX470248) BP3030; S-adenosyl-methyltransferase MraW complement(4066058..4067152) Bordetella parapertussis 12822 1667666 NP_885913.1 CDS mraZ NC_002928.3 4067161 4067652 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(4067161..4067652) Bordetella parapertussis 12822 1667712 NP_885914.1 CDS BPP3761 NC_002928.3 4068392 4070200 D ortholog of Bordetella pertussis (BX470248) BP3034; ABC transporter ATP-binding protein 4068392..4070200 Bordetella parapertussis 12822 1667713 NP_885915.1 CDS pyrC NC_002928.3 4070240 4071319 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(4070240..4071319) Bordetella parapertussis 12822 1667714 NP_885916.1 CDS BPP3763 NC_002928.3 4071316 4072509 R ortholog of Bordetella pertussis (BX470248) BP3036; hydrolase complement(4071316..4072509) Bordetella parapertussis 12822 1667715 NP_885917.1 CDS BPP3764 NC_002928.3 4072659 4072937 D ortholog of Bordetella pertussis (BX470248) BP3037; hypothetical protein 4072659..4072937 Bordetella parapertussis 12822 1667716 NP_885918.1 CDS BPP3765 NC_002928.3 4073334 4073726 R ortholog of Bordetella pertussis (BX470248) BP3038; hypothetical protein complement(4073334..4073726) Bordetella parapertussis 12822 1667717 NP_885919.1 CDS lrp NC_002928.3 4080485 4080961 R ortholog of Bordetella pertussis (BX470248) BP3039; leucine-responsive regulatory protein complement(4080485..4080961) Bordetella parapertussis 12822 1667718 NP_885920.1 CDS bllY NC_002928.3 4081114 4082226 D ortholog of Bordetella pertussis (BX470248) BP3040; hemolysin 4081114..4082226 Bordetella parapertussis 12822 1668222 NP_885921.1 CDS BPP3768 NC_002928.3 4082294 4082854 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(4082294..4082854) Bordetella parapertussis 12822 1668223 NP_885922.1 CDS cyt NC_002928.3 4082878 4083210 R ortholog of Bordetella pertussis (BX470248) BP3042; cytochrome C552 precursor complement(4082878..4083210) Bordetella parapertussis 12822 1668224 NP_885923.2 CDS ilvD NC_002928.3 4083194 4084879 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(4083194..4084879) Bordetella parapertussis 12822 1668225 NP_885924.1 CDS lgt NC_002928.3 4084999 4085787 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 4084999..4085787 Bordetella parapertussis 12822 1668226 NP_885925.1 CDS BPP3772 NC_002928.3 4085762 4086532 R ortholog of Bordetella pertussis (BX470248) BP3045; hypothetical protein complement(4085762..4086532) Bordetella parapertussis 12822 1668227 NP_885926.1 CDS BPP3773 NC_002928.3 4086846 4087157 R ortholog of Bordetella pertussis (BX470248) BP3047; hypothetical protein complement(4086846..4087157) Bordetella parapertussis 12822 1668228 NP_885927.1 CDS BPP3774 NC_002928.3 4087157 4087687 R ortholog of Bordetella pertussis (BX470248) BP3048; hypothetical protein complement(4087157..4087687) Bordetella parapertussis 12822 1668229 NP_885928.1 CDS BPP3775 NC_002928.3 4088040 4088504 D ortholog of Bordetella pertussis (BX470248) BP3050; hypothetical protein 4088040..4088504 Bordetella parapertussis 12822 1668230 NP_885929.1 CDS BPP3776 NC_002928.3 4088519 4090024 D ortholog of Bordetella pertussis (BX470248) BP3051; hypothetical protein 4088519..4090024 Bordetella parapertussis 12822 1668231 NP_885930.1 CDS BPP3777 NC_002928.3 4090091 4091311 R transposase for IS1001 element; transposase complement(4090091..4091311) Bordetella parapertussis 12822 1667880 NP_885931.1 CDS BPP3778 NC_002928.3 4091593 4093200 D ortholog of Bordetella pertussis (BX470248) BP3052; gamma-glutamyltranspeptidase 4091593..4093200 Bordetella parapertussis 12822 1667881 NP_885932.1 CDS BPP3779 NC_002928.3 4093256 4094164 D ortholog of Bordetella pertussis (BX470248) BP3053; oxidoreductase 4093256..4094164 Bordetella parapertussis 12822 1667882 NP_885933.1 CDS acpD NC_002928.3 4094213 4094842 R ortholog of Bordetella pertussis (BX470248) BP0497+BP3054; Similar to Escherichia coli acyl carrier protein phosphodiesterase acpd or b1412 SWALL:ACPD_ECOLI (SWALL:P41407) (200 aa) fasta scores: E(): 3.5e-29, 46.97% id in 198 aa, and to Yersinia pestis acyl carrier protein phosphodiesterase acpd or ypo2323 SWALL:Q8ZE60 (EMBL:AJ414152) (201 aa) fasta scores: E(): 9.6e-31, 50.26% id in 191 aa; ACP phosphodiesterase complement(4094213..4094842) Bordetella parapertussis 12822 1667883 NP_885934.1 CDS BPP3781 NC_002928.3 4094964 4095887 D ortholog of Bordetella pertussis (BX470248) BP0498; LysR family transcriptional regulator 4094964..4095887 Bordetella parapertussis 12822 1667884 NP_885935.1 CDS BPP3782 NC_002928.3 4095896 4096294 R ortholog of Bordetella pertussis (BX470248) BP0499; hypothetical protein complement(4095896..4096294) Bordetella parapertussis 12822 1667885 NP_885936.1 CDS BPP3783 NC_002928.3 4096537 4098510 D ortholog of Bordetella pertussis (BX470248) BP0500; hypothetical protein 4096537..4098510 Bordetella parapertussis 12822 1667886 NP_885937.1 CDS BPP3784 NC_002928.3 4098536 4100047 R ortholog of Bordetella pertussis (BX470248) BP3351+BP0501; two component sensor kinase complement(4098536..4100047) Bordetella parapertussis 12822 1667887 NP_885938.1 CDS BPP3785 NC_002928.3 4100079 4100732 R ortholog of Bordetella pertussis (BX470248) BP3350; two component response regulator complement(4100079..4100732) Bordetella parapertussis 12822 1667888 NP_885939.1 CDS nudH NC_002928.3 4100746 4101318 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(4100746..4101318) Bordetella parapertussis 12822 1666002 NP_885940.1 CDS proS NC_002928.3 4101384 4103114 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 4101384..4103114 Bordetella parapertussis 12822 1666003 NP_885941.1 CDS BPP3788 NC_002928.3 4103167 4103595 D ortholog of Bordetella pertussis (BX470248) BP3347; hypothetical protein 4103167..4103595 Bordetella parapertussis 12822 1666004 NP_885942.1 CDS BPP3789 NC_002928.3 4103598 4104278 D ortholog of Bordetella pertussis (BX470248) BP3346; TolQ-like translocation protein 4103598..4104278 Bordetella parapertussis 12822 1666005 NP_885943.1 CDS BPP3790 NC_002928.3 4104278 4104736 D ortholog of Bordetella pertussis (BX470248) BP3345; TolR-like translocation protein 4104278..4104736 Bordetella parapertussis 12822 1666006 NP_885944.1 CDS BPP3791 NC_002928.3 4104773 4105894 D ortholog of Bordetella pertussis (BX470248) BP3344; proline-rich inner membrane protein 4104773..4105894 Bordetella parapertussis 12822 1666007 NP_885945.1 CDS tolB NC_002928.3 4105902 4107227 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 4105902..4107227 Bordetella parapertussis 12822 1666008 NP_885946.1 CDS BPP3793 NC_002928.3 4107259 4107756 D ortholog of Bordetella pertussis (BX470248) BP3342; peptidoglycan-associated lipoprotein 4107259..4107756 Bordetella parapertussis 12822 1666009 NP_885947.1 CDS BPP3794 NC_002928.3 4107843 4108532 D ortholog of Bordetella pertussis (BX470248) BP3341; periplasmic protein 4107843..4108532 Bordetella parapertussis 12822 1666010 NP_885948.1 CDS BPP3795 NC_002928.3 4108532 4109581 D ortholog of Bordetella pertussis (BX470248) BP3340; ABC transport inner membrane permease 4108532..4109581 Bordetella parapertussis 12822 1667953 NP_885949.1 CDS BPP3796 NC_002928.3 4109578 4110372 D ortholog of Bordetella pertussis (BX470248) BP3339; ABC transporter ATP-binding protein 4109578..4110372 Bordetella parapertussis 12822 1667954 NP_885950.1 CDS BPP3797 NC_002928.3 4110541 4111527 D ortholog of Bordetella pertussis (BX470248) BP3338; hypothetical protein 4110541..4111527 Bordetella parapertussis 12822 1667955 NP_885951.1 CDS BPP3799 NC_002928.3 4113145 4113600 R Similar to Rhizobium loti transcriptional regulator mll8302 SWALL:Q983J5 (EMBL:AP003013) (146 aa) fasta scores: E(): 3.8e-05, 29.5% id in 122 aa; MarR family transcriptional regulator complement(4113145..4113600) Bordetella parapertussis 12822 1667957 NP_885952.1 CDS BPP3800 NC_002928.3 4113691 4114959 D Similar to Rhizobium meliloti oxidoreductase r00742 or smc00797 SWALL:Q92RU9 (EMBL:AL591784) (417 aa) fasta scores: E(): 2.2e-74, 50.23% id in 420 aa, and to Escherichia coli O157:H7 D-amino acid dehydrogenase small subunit DadA or DadR or b1189 or z1952 or ecs1684 SWALL:DADA_ECOLI (SWALL:P29011) (432 aa) fasta scores: E(): 1.6e-16, 27.5% id in 429 aa; amino acid oxidoreductase 4113691..4114959 Bordetella parapertussis 12822 1667958 NP_885953.1 CDS BPP3801 NC_002928.3 4114972 4115472 R Similar to Ralstonia solanacearum hypothetical protein rsc0260 rsc0260 or rs00695 SWALL:Q8Y2S5 (EMBL:AL646058) (170 aa) fasta scores: E(): 8.3e-47, 79.14% id in 163 aa; hypothetical protein complement(4114972..4115472) Bordetella parapertussis 12822 1667959 NP_885954.1 CDS BPP3802 NC_002928.3 4115592 4116398 D Similar to Pseudomonas aeruginosa probable hydrolase pa2745 SWALL:Q9I098 (EMBL:AE004702) (287 aa) fasta scores: E(): 6.5e-19, 47.05% id in 272 aa; hydrolase 4115592..4116398 Bordetella parapertussis 12822 1667960 NP_885955.1 CDS BPP3803 NC_002928.3 4116621 4117619 D Similar to Comamonas testosteroni OrfJ protein orfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 2e-33, 34.95% id in 329 aa; hypothetical protein 4116621..4117619 Bordetella parapertussis 12822 1667961 NP_885956.1 CDS BPP3804 NC_002928.3 4117690 4119354 D ortholog of Bordetella pertussis (BX470248) BP0423; fatty acid CoA ligase 4117690..4119354 Bordetella parapertussis 12822 1667962 NP_885957.1 CDS BPP3805 NC_002928.3 4119403 4120596 R ortholog of Bordetella pertussis (BX470248) BP0422; thiolase complement(4119403..4120596) Bordetella parapertussis 12822 1667963 NP_885958.1 CDS BPP3806 NC_002928.3 4120662 4121690 R ortholog of Bordetella pertussis (BX470248) BP0421; acyl-CoA dehydrogenase complement(4120662..4121690) Bordetella parapertussis 12822 1667964 NP_885959.1 CDS BPP3807 NC_002928.3 4121717 4122949 R ortholog of Bordetella pertussis (BX470248) BP0420; acyl-CoA dehydrogenase complement(4121717..4122949) Bordetella parapertussis 12822 1667965 NP_885960.1 CDS BPP3808 NC_002928.3 4123075 4123992 D ortholog of Bordetella pertussis (BX470248) BP0419; LysR family transcriptional regulator 4123075..4123992 Bordetella parapertussis 12822 1664935 NP_885961.1 CDS BPP3809 NC_002928.3 4124003 4124974 R ortholog of Bordetella pertussis (BX470248) BP0418; hypothetical protein complement(4124003..4124974) Bordetella parapertussis 12822 1664936 NP_885962.1 CDS BPP3810 NC_002928.3 4125041 4125826 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4125041..4125826) Bordetella parapertussis 12822 1664937 NP_885963.1 CDS BPP3811 NC_002928.3 4125823 4127052 R ortholog of Bordetella pertussis (BX470248) BP0416; hypothetical protein complement(4125823..4127052) Bordetella parapertussis 12822 1664938 NP_885964.1 CDS BPP3812 NC_002928.3 4127248 4128003 R ortholog of Bordetella pertussis (BX470248) BP0415; hypothetical protein complement(4127248..4128003) Bordetella parapertussis 12822 1664939 NP_885965.1 CDS BPP3813 NC_002928.3 4128114 4128632 D ortholog of Bordetella pertussis (BX470248) BP0414; Mg(2+) transporter 4128114..4128632 Bordetella parapertussis 12822 1664940 NP_885966.1 CDS fusA NC_002928.3 4128629 4130746 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(4128629..4130746) Bordetella parapertussis 12822 1664941 NP_885967.1 CDS BPP3815 NC_002928.3 4131108 4132328 R transposase for IS1001 element; transposase complement(4131108..4132328) Bordetella parapertussis 12822 1665316 NP_885968.1 CDS BPP3816 NC_002928.3 4132471 4132941 R ortholog of Bordetella pertussis (BX470248) BP0410; universal stress protein complement(4132471..4132941) Bordetella parapertussis 12822 1665317 NP_885969.1 CDS BPP3817 NC_002928.3 4133030 4133374 R ortholog of Bordetella pertussis (BX470248) BP0411; hypothetical protein complement(4133030..4133374) Bordetella parapertussis 12822 1665318 NP_885970.1 CDS BPP3818 NC_002928.3 4133474 4134874 R ortholog of Bordetella pertussis (BX470248) BP0412; GntR family transcriptional regulator complement(4133474..4134874) Bordetella parapertussis 12822 1665319 NP_885971.1 CDS BPP3819 NC_002928.3 4135063 4135977 D ortholog of Bordetella pertussis (BX470248) BP0393; hypothetical protein 4135063..4135977 Bordetella parapertussis 12822 1665320 NP_885972.1 CDS BPP3820 NC_002928.3 4135974 4136633 D ortholog of Bordetella pertussis (BX470248) BP0394; hypothetical protein 4135974..4136633 Bordetella parapertussis 12822 1665321 NP_885973.1 CDS BPP3821 NC_002928.3 4136723 4137646 D ortholog of Bordetella pertussis (BX470248) BP0395; hypothetical protein 4136723..4137646 Bordetella parapertussis 12822 1665322 NP_885974.1 CDS BPP3822 NC_002928.3 4137652 4138107 R ortholog of Bordetella pertussis (BX470248) BP0396; hypothetical protein complement(4137652..4138107) Bordetella parapertussis 12822 1665323 NP_885975.1 CDS BPP3823 NC_002928.3 4138104 4139207 R ortholog of Bordetella pertussis (BX470248) BP0397; hypothetical protein complement(4138104..4139207) Bordetella parapertussis 12822 1665324 NP_885976.1 CDS BPP3824 NC_002928.3 4139395 4141014 R ortholog of Bordetella pertussis (BX470248) BP0398; hypothetical protein complement(4139395..4141014) Bordetella parapertussis 12822 1665325 NP_885977.1 CDS BPP3825 NC_002928.3 4141011 4142069 R ortholog of Bordetella pertussis (BX470248) BP0399; glycosyl transferase complement(4141011..4142069) Bordetella parapertussis 12822 1665494 NP_885978.1 CDS BPP3826 NC_002928.3 4142199 4142714 D ortholog of Bordetella pertussis (BX470248) BP0400; acetyltransferase 4142199..4142714 Bordetella parapertussis 12822 1665495 NP_885979.1 CDS gltS NC_002928.3 4142910 4144115 D ortholog of Bordetella pertussis (BX470248) BP0402; sodium/glutamate symport carrier protein 4142910..4144115 Bordetella parapertussis 12822 1665496 NP_885980.1 CDS BPP3828 NC_002928.3 4144112 4145623 D ortholog of Bordetella pertussis (BX470248) BP0403; hypothetical protein 4144112..4145623 Bordetella parapertussis 12822 1665497 NP_885981.1 CDS atoE NC_002928.3 4145639 4147084 R ortholog of Bordetella pertussis (BX470248) BP0404; short-chain fatty acids transporter complement(4145639..4147084) Bordetella parapertussis 12822 1665498 NP_885982.1 CDS BPP3830 NC_002928.3 4147143 4147322 R ortholog of Bordetella pertussis (BX470248) BP0405; hypothetical protein complement(4147143..4147322) Bordetella parapertussis 12822 1665499 NP_885983.1 CDS dnaQ NC_002928.3 4147732 4148466 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(4147732..4148466) Bordetella parapertussis 12822 1665500 NP_885984.1 CDS BPP3832 NC_002928.3 4148475 4151561 R ortholog of Bordetella pertussis (BX470248) BP0407; hypothetical protein complement(4148475..4151561) Bordetella parapertussis 12822 1665501 NP_885985.1 CDS BPP3833 NC_002928.3 4151574 4152698 R Similar to Caulobacter crescentus hlyd family secretion protein cc1203 SWALL:Q9A8Z2 (EMBL:AE005797) (354 aa) fasta scores: E(): 4.2e-25, 32.37% id in 312 aa; HlyD-like secretion protein complement(4151574..4152698) Bordetella parapertussis 12822 1667376 NP_885986.1 CDS rnhA NC_002928.3 4152822 4153289 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(4152822..4153289) Bordetella parapertussis 12822 1667377 NP_885987.1 CDS BPP3835 NC_002928.3 4153332 4154102 R ortholog of Bordetella pertussis (BX470248) BP3212; hypothetical protein complement(4153332..4154102) Bordetella parapertussis 12822 1667378 NP_885988.1 CDS gloB NC_002928.3 4154123 4154923 D ortholog of Bordetella pertussis (BX470248) BP3213; hydroxyacylglutathione hydrolase 4154123..4154923 Bordetella parapertussis 12822 1667379 NP_885989.1 CDS BPP3837 NC_002928.3 4154934 4156343 D ortholog of Bordetella pertussis (BX470248) BP3214; membrane-bound precursor protein; membrane-bound lytic murein transglycosylase D precursor 4154934..4156343 Bordetella parapertussis 12822 1667380 NP_885990.1 CDS fabI NC_002928.3 4156438 4157223 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 4156438..4157223 Bordetella parapertussis 12822 1667381 NP_885991.1 CDS BPP3839 NC_002928.3 4157417 4157809 R ortholog of Bordetella pertussis (BX470248) BP3217; hypothetical protein complement(4157417..4157809) Bordetella parapertussis 12822 1667382 NP_885992.1 CDS BPP3840 NC_002928.3 4157947 4158627 D ortholog of Bordetella pertussis (BX470248) BP3218; hypothetical protein 4157947..4158627 Bordetella parapertussis 12822 1667383 NP_885993.1 CDS BPP3841 NC_002928.3 4158632 4159630 R ortholog of Bordetella pertussis (BX470248) BP3219; hypothetical protein complement(4158632..4159630) Bordetella parapertussis 12822 1667384 NP_885994.1 CDS nadC NC_002928.3 4159699 4160604 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase complement(4159699..4160604) Bordetella parapertussis 12822 1666543 NP_885995.1 CDS BPP3843 NC_002928.3 4160706 4161725 R ortholog of Bordetella pertussis (BX470248) BP3724; hypothetical protein complement(4160706..4161725) Bordetella parapertussis 12822 1666544 NP_885996.1 CDS BPP3844 NC_002928.3 4161996 4162988 D ortholog of Bordetella pertussis (BX470248) BP3700; hypothetical protein 4161996..4162988 Bordetella parapertussis 12822 1666545 NP_885997.1 CDS BPP3845 NC_002928.3 4163001 4163831 R ortholog of Bordetella pertussis (BX470248) BP3699; GntR family transcriptional regulator complement(4163001..4163831) Bordetella parapertussis 12822 1666546 NP_885998.1 CDS BPP3846 NC_002928.3 4163885 4164946 R Similar to Escherichia coli tellurite resistance protein teha teha or b1429 SWALL:TEHA_ECOLI (SWALL:P25396) (330 aa) fasta scores: E(): 1.6e-18, 27.27% id in 308 aa; inner membrane transport protein complement(4163885..4164946) Bordetella parapertussis 12822 1666547 NP_885999.1 CDS BPP3847 NC_002928.3 4164943 4166400 R Similar to Rhizobium meliloti choline-sulfatase BetC or r00949 or smc00127 SWALL:BETC_RHIME (SWALL:O69787) (512 aa) fasta scores: E(): 7.9e-43, 32.7% id in 477 aa; sulfatase complement(4164943..4166400) Bordetella parapertussis 12822 1666548 NP_886000.1 CDS BPP3848 NC_002928.3 4166540 4168141 R Similar to Ralstonia solanacearum choline dehydrogenase lipoprotein oxidoreductase BetA or rsc3345 or rs02583 SWALL:Q8XU48 (EMBL:AL646074) (544 aa) fasta scores: E(): 9.9e-100, 50.56% id in 534 aa, and to Pseudomonas oleovorans alcohol dehydrogenase [acceptor] AlkJ or AlcO SWALL:ALKJ_PSEOL (SWALL:Q00593) (558 aa) fasta scores: E(): 4.3e-87, 44.52% id in 530 aa; GMC oxidoreductase complement(4166540..4168141) Bordetella parapertussis 12822 1666549 NP_886001.1 CDS BPP3849 NC_002928.3 4168155 4169111 R Similar to Pseudomonas sp. vanillate O-demethylase oxidoreductase VanB SWALL:VANB_PSESP (SWALL:O05617) (317 aa) fasta scores: E(): 6.6e-47, 43.16% id in 322 aa, and to Streptomyces coelicolor iron-sulfur oxidoreductase beta subunit SC5A7.28c SWALL:O88034 (EMBL:AL031107) (313 aa) fasta scores: E(): 1.1e-21, 40.12% id in 309 aa; iron-sulfur oxidoreductase subunit complement(4168155..4169111) Bordetella parapertussis 12822 1666550 NP_886002.1 CDS BPP3850 NC_002928.3 4169127 4170563 R Similar to Pseudomonas pseudoalcaligenes phenoxybenzoate dioxygenase alpha subunit PobA SWALL:POBA_PSEPS (SWALL:Q52185) (409 aa) fasta scores: E(): 3.8e-31, 35.58% id in 399 aa; dioxygenase complement(4169127..4170563) Bordetella parapertussis 12822 1666551 NP_886003.1 CDS BPP3851 NC_002928.3 4170627 4172081 R ortholog of Bordetella pertussis (BX470248) BP3165; Similar to Comamonas testosteroni toluenesulfonate aldehyde dehydrogenase TsaD SWALL:P94682 (EMBL:U32622) (476 aa) fasta scores: E(): 1.2e-75, 47.76% id in 469 aa, and to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or b2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 1.2e-64, 39.44% id in 469 aa; aldehyde dehydrogenase complement(4170627..4172081) Bordetella parapertussis 12822 1666552 NP_886004.1 CDS ureG NC_002928.3 4172375 4173019 R ortholog of Bordetella pertussis (BX470248) BP3166; urease accessory protein complement(4172375..4173019) Bordetella parapertussis 12822 1666876 NP_886005.1 CDS ureF NC_002928.3 4173044 4173706 R ortholog of Bordetella pertussis (BX470248) BP3167; urease accessory protein complement(4173044..4173706) Bordetella parapertussis 12822 1666877 NP_886006.1 CDS ureE NC_002928.3 4173729 4174346 R involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE complement(4173729..4174346) Bordetella parapertussis 12822 1666878 NP_886007.1 CDS ureC NC_002928.3 4174349 4176064 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(4174349..4176064) Bordetella parapertussis 12822 1666879 NP_886008.1 CDS ureB NC_002928.3 4176061 4176369 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta complement(4176061..4176369) Bordetella parapertussis 12822 1666880 NP_886009.1 CDS ureJ NC_002928.3 4176386 4177003 R ortholog of Bordetella pertussis (BX470248) BP3170; urease accessory protein complement(4176386..4177003) Bordetella parapertussis 12822 1666881 NP_886010.1 CDS ureA NC_002928.3 4177048 4177350 R UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma complement(4177048..4177350) Bordetella parapertussis 12822 1666882 NP_886011.1 CDS ureD NC_002928.3 4177451 4178305 R ortholog of Bordetella pertussis (BX470248) BP3172; urease accessory protein complement(4177451..4178305) Bordetella parapertussis 12822 1666883 NP_886012.1 CDS hmrR NC_002928.3 4178887 4179159 D ortholog of Bordetella pertussis (BX470248) BP3173; heavy metal dependent transcription regulator (partial) 4178887..4179159 Bordetella parapertussis 12822 1666884 NP_886013.1 CDS fdx NC_002928.3 4179176 4179514 D ortholog of Bordetella pertussis (BX470248) BP3174; [2Fe-2S] ferredoxin 4179176..4179514 Bordetella parapertussis 12822 1666885 NP_886014.1 CDS BPP3862 NC_002928.3 4179576 4179983 R ortholog of Bordetella pertussis (BX470248) BP3175; hypothetical protein complement(4179576..4179983) Bordetella parapertussis 12822 1666886 NP_886015.1 CDS BPP3863 NC_002928.3 4180353 4181153 R ortholog of Bordetella pertussis (BX470248) BP3176; GntR family transcriptional regulator complement(4180353..4181153) Bordetella parapertussis 12822 1666887 NP_886016.1 CDS BPP3864 NC_002928.3 4181248 4182483 D ortholog of Bordetella pertussis (BX470248) BP3177; methylaspartate ammonia-lyase 4181248..4182483 Bordetella parapertussis 12822 1666888 NP_886017.1 CDS BPP3865 NC_002928.3 4182552 4183568 D ortholog of Bordetella pertussis (BX470248) BP3178; hypothetical protein 4182552..4183568 Bordetella parapertussis 12822 1666392 NP_886018.1 CDS BPP3866 NC_002928.3 4183565 4184950 D ortholog of Bordetella pertussis (BX470248) BP3179; hypothetical protein 4183565..4184950 Bordetella parapertussis 12822 1666393 NP_886019.1 CDS BPP3867 NC_002928.3 4184947 4186143 D ortholog of Bordetella pertussis (BX470248) BP3180; hypothetical protein 4184947..4186143 Bordetella parapertussis 12822 1666394 NP_886020.1 CDS BPP3868 NC_002928.3 4186140 4187678 R ortholog of Bordetella pertussis (BX470248) BP3181; SpoVR family protein complement(4186140..4187678) Bordetella parapertussis 12822 1666395 NP_886021.1 CDS BPP3869 NC_002928.3 4187675 4188934 R ortholog of Bordetella pertussis (BX470248) BP3182; hypothetical protein complement(4187675..4188934) Bordetella parapertussis 12822 1666396 NP_886022.1 CDS BPP3870 NC_002928.3 4188947 4190908 R ortholog of Bordetella pertussis (BX470248) BP3183; hypothetical protein complement(4188947..4190908) Bordetella parapertussis 12822 1666397 NP_886023.1 CDS BPP3871 NC_002928.3 4191232 4192392 R ortholog of Bordetella pertussis (BX470248) BP2948; riboflavin-specific deaminase; riboflavin biosynthesis protein ribd [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase complement(4191232..4192392) Bordetella parapertussis 12822 1666398 NP_886024.1 CDS BPP3872 NC_002928.3 4192562 4193125 D ortholog of Bordetella pertussis (BX470248) BP2949; hypothetical protein 4192562..4193125 Bordetella parapertussis 12822 1666399 NP_886025.1 CDS BPP3873 NC_002928.3 4193138 4194094 D ortholog of Bordetella pertussis (BX470248) BP2950; AraC family transcriptional regulator 4193138..4194094 Bordetella parapertussis 12822 1666400 NP_886026.1 CDS nrdR NC_002928.3 4194107 4194589 R ortholog of Bordetella pertussis (BX470248) BP2951; transcriptional regulator NrdR complement(4194107..4194589) Bordetella parapertussis 12822 1666401 NP_886027.1 CDS glyA NC_002928.3 4194748 4195995 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(4194748..4195995) Bordetella parapertussis 12822 1667986 NP_886028.1 CDS BPP3876 NC_002928.3 4196210 4196866 R ortholog of Bordetella pertussis (BX470248) BP2953; hypothetical protein complement(4196210..4196866) Bordetella parapertussis 12822 1667987 NP_886029.1 CDS tyrS NC_002928.3 4196902 4198131 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(4196902..4198131) Bordetella parapertussis 12822 1667988 NP_886030.1 CDS BPP3878 NC_002928.3 4198393 4199808 D ortholog of Bordetella pertussis (BX470248) BP2956; hypothetical protein 4198393..4199808 Bordetella parapertussis 12822 1667989 NP_886031.1 CDS anmK NC_002928.3 4199814 4200950 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 4199814..4200950 Bordetella parapertussis 12822 1667990 NP_886032.1 CDS BPP3880 NC_002928.3 4201020 4201391 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(4201020..4201391) Bordetella parapertussis 12822 1667991 NP_886033.1 CDS BPP3881 NC_002928.3 4201593 4202246 R ortholog of Bordetella pertussis (BX470248) BP2959; integral membrane protein complement(4201593..4202246) Bordetella parapertussis 12822 1667992 NP_886034.1 CDS argC NC_002928.3 4202262 4203326 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(4202262..4203326) Bordetella parapertussis 12822 1667993 NP_886035.1 CDS rpsI NC_002928.3 4203515 4203907 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(4203515..4203907) Bordetella parapertussis 12822 1667994 NP_886036.2 CDS rplM NC_002928.3 4203917 4204345 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(4203917..4204345) Bordetella parapertussis 12822 1667995 NP_886037.1 CDS BPP3885 NC_002928.3 4204641 4205738 R ortholog of Bordetella pertussis (BX470248) BP2963; exported solute binding protein complement(4204641..4205738) Bordetella parapertussis 12822 1667996 NP_886038.1 CDS BPP3886 NC_002928.3 4206077 4207441 R ortholog of Bordetella pertussis (BX470248) BP2964; hypothetical protein complement(4206077..4207441) Bordetella parapertussis 12822 1667997 NP_886039.1 CDS BPP3887 NC_002928.3 4207434 4208051 D ortholog of Bordetella pertussis (BX470248) BP2965; hypothetical protein 4207434..4208051 Bordetella parapertussis 12822 1667067 NP_886040.1 CDS BPP3888 NC_002928.3 4208065 4208739 D ortholog of Bordetella pertussis (BX470248) BP2966; carboxylesterase 4208065..4208739 Bordetella parapertussis 12822 1667068 NP_886041.1 CDS BPP3890 NC_002928.3 4209995 4210804 D ortholog of Bordetella pertussis (BX470248) BP2969; ABC transport proteins, ATP-binding component 4209995..4210804 Bordetella parapertussis 12822 1667070 NP_886042.1 CDS BPP3891 NC_002928.3 4210807 4211643 D ortholog of Bordetella pertussis (BX470248) BP2970; ABC transporter inner membrane protein 4210807..4211643 Bordetella parapertussis 12822 1667071 NP_886043.1 CDS BPP3892 NC_002928.3 4211658 4212350 D ortholog of Bordetella pertussis (BX470248) BP2971; hydrolase 4211658..4212350 Bordetella parapertussis 12822 1667072 NP_886044.1 CDS BPP3893 NC_002928.3 4212362 4212751 R ortholog of Bordetella pertussis (BX470248) BP2972; hypothetical protein complement(4212362..4212751) Bordetella parapertussis 12822 1667073 NP_886045.1 CDS dbpA NC_002928.3 4212857 4214245 R exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA complement(4212857..4214245) Bordetella parapertussis 12822 1667074 NP_886046.1 CDS BPP3896 NC_002928.3 4216177 4216851 D ortholog of Bordetella pertussis (BX470248) BP2975; GntR family transcriptional regulator 4216177..4216851 Bordetella parapertussis 12822 1667076 NP_886047.1 CDS BPP3897 NC_002928.3 4216848 4219307 R ortholog of Bordetella pertussis (BX470248) BP2977; hypothetical protein complement(4216848..4219307) Bordetella parapertussis 12822 1666860 NP_886048.1 CDS gltX NC_002928.3 4219404 4220849 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 4219404..4220849 Bordetella parapertussis 12822 1666861 NP_886049.1 CDS BPP3899 NC_002928.3 4220853 4222055 R ortholog of Bordetella pertussis (BX470248) BP2979; membrane transport protein complement(4220853..4222055) Bordetella parapertussis 12822 1666862 NP_886050.1 CDS BPP3900 NC_002928.3 4222124 4222633 R ortholog of Bordetella pertussis (BX470248) BP2980; lipoprotein complement(4222124..4222633) Bordetella parapertussis 12822 1666863 NP_886051.1 CDS BPP3901 NC_002928.3 4222888 4223340 R ortholog of Bordetella pertussis (BX470248) BP2981; AsnC family transcriptional regulator complement(4222888..4223340) Bordetella parapertussis 12822 1666864 NP_886052.1 CDS BPP3902 NC_002928.3 4223469 4226966 D catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; 2-oxoacid ferredoxin oxidoreductase 4223469..4226966 Bordetella parapertussis 12822 1666865 NP_886053.1 CDS nrdA NC_002928.3 4227272 4230199 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 4227272..4230199 Bordetella parapertussis 12822 1666866 NP_886054.1 CDS nrdB NC_002928.3 4230221 4231417 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 4230221..4231417 Bordetella parapertussis 12822 1666867 NP_886055.1 CDS bph1 NC_002928.3 4231729 4232322 D ortholog of Bordetella pertussis (BX470248) BP2985; histone protein 4231729..4232322 Bordetella parapertussis 12822 1666868 NP_886056.1 CDS BPP3906 NC_002928.3 4232461 4233036 D ortholog of Bordetella pertussis (BX470248) BP2986; integral membrane protein 4232461..4233036 Bordetella parapertussis 12822 1666869 NP_886057.1 CDS dltA NC_002928.3 4233044 4234507 R ortholog of Bordetella pertussis (BX470248) BP2987; D-alanine--D-alanine ligase complement(4233044..4234507) Bordetella parapertussis 12822 1666579 NP_886058.1 CDS dltB NC_002928.3 4234518 4235645 R ortholog of Bordetella pertussis (BX470248) BP2988; protein involved in the transfer of D-alanine into teichoic acids complement(4234518..4235645) Bordetella parapertussis 12822 1666580 NP_886059.1 CDS BPP3909 NC_002928.3 4235653 4235778 R ortholog of Bordetella pertussis (BX470248) BP2989; No significant database matches; hypothetical protein complement(4235653..4235778) Bordetella parapertussis 12822 1666581 NP_886060.1 CDS dltD NC_002928.3 4235775 4236902 R ortholog of Bordetella pertussis (BX470248) BP2990; protein involved in the transfer of D-alanine into teichoic acids complement(4235775..4236902) Bordetella parapertussis 12822 1666582 NP_886061.1 CDS BPP3911 NC_002928.3 4236928 4237167 R ortholog of Bordetella pertussis (BX470248) BP2991; acyl carrier protein complement(4236928..4237167) Bordetella parapertussis 12822 1666583 NP_886062.1 CDS pcp NC_002928.3 4237490 4237993 R ortholog of Bordetella pertussis (BX470248) BP2992; lipoprotein complement(4237490..4237993) Bordetella parapertussis 12822 1666584 NP_886063.1 CDS BPP3913 NC_002928.3 4238167 4239108 R ortholog of Bordetella pertussis (BX470248) BP2993; carbohydrate kinase complement(4238167..4239108) Bordetella parapertussis 12822 1666585 NP_886064.1 CDS BPP3914 NC_002928.3 4239120 4240229 R ortholog of Bordetella pertussis (BX470248) BP2994; hypothetical protein complement(4239120..4240229) Bordetella parapertussis 12822 1666586 NP_886065.1 CDS prmA NC_002928.3 4240255 4241178 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(4240255..4241178) Bordetella parapertussis 12822 1666587 NP_886066.1 CDS fabG NC_002928.3 4241197 4242543 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(4241197..4242543) Bordetella parapertussis 12822 1666588 NP_886067.1 CDS fabE NC_002928.3 4242553 4243002 R composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit complement(4242553..4243002) Bordetella parapertussis 12822 1666589 NP_886068.1 CDS aroQ NC_002928.3 4243092 4243526 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(4243092..4243526) Bordetella parapertussis 12822 1666590 NP_886069.1 CDS BPP3919 NC_002928.3 4243605 4244153 R ortholog of Bordetella pertussis (BX470248) BP2999; thioredoxin complement(4243605..4244153) Bordetella parapertussis 12822 1666323 NP_886070.1 CDS mpl NC_002928.3 4244236 4245606 D ortholog of Bordetella pertussis (BX470248) BP3000; UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4244236..4245606 Bordetella parapertussis 12822 1666324 NP_886071.1 CDS BPP3921 NC_002928.3 4245617 4246210 D ortholog of Bordetella pertussis (BX470248) BP3001; hypothetical protein 4245617..4246210 Bordetella parapertussis 12822 1666325 NP_886072.1 CDS BPP3922 NC_002928.3 4246282 4248165 D ortholog of Bordetella pertussis (BX470248) BP3002; hypothetical protein 4246282..4248165 Bordetella parapertussis 12822 1666326 NP_886073.1 CDS BPP3923 NC_002928.3 4248203 4249102 D ortholog of Bordetella pertussis (BX470248) BP3003; hypothetical protein 4248203..4249102 Bordetella parapertussis 12822 1666327 NP_886074.1 CDS aroE NC_002928.3 4249099 4249962 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 4249099..4249962 Bordetella parapertussis 12822 1666328 NP_886075.1 CDS mtgA NC_002928.3 4249983 4250711 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 4249983..4250711 Bordetella parapertussis 12822 1666329 NP_886076.1 CDS BPP3926 NC_002928.3 4250718 4251986 D ortholog of Bordetella pertussis (BX470248) BP0325; hypothetical protein 4250718..4251986 Bordetella parapertussis 12822 1666330 NP_886077.1 CDS apaH NC_002928.3 4251983 4252816 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 4251983..4252816 Bordetella parapertussis 12822 1666331 NP_886078.1 CDS BPP3928 NC_002928.3 4252853 4253593 R ortholog of Bordetella pertussis (BX470248) BP0323; acyltransferase complement(4252853..4253593) Bordetella parapertussis 12822 1666332 NP_886079.1 CDS pyrC NC_002928.3 4253590 4254888 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(4253590..4254888) Bordetella parapertussis 12822 1666333 NP_886080.1 CDS pyrB NC_002928.3 4254885 4255838 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(4254885..4255838) Bordetella parapertussis 12822 1666447 NP_886081.1 CDS BPP3931 NC_002928.3 4255852 4256253 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(4255852..4256253) Bordetella parapertussis 12822 1666448 NP_886082.2 CDS BPP3932 NC_002928.3 4256246 4256851 R ortholog of Bordetella pertussis (BX470248) BP0319; hypothetical protein complement(4256246..4256851) Bordetella parapertussis 12822 1666449 NP_886083.1 CDS rubA NC_002928.3 4256939 4257103 R ortholog of Bordetella pertussis (BX470248) BP0318; rubredoxin complement(4256939..4257103) Bordetella parapertussis 12822 1666450 NP_886084.1 CDS thiD NC_002928.3 4257220 4258068 D ortholog of Bordetella pertussis (BX470248) BP0317; phosphomethylpyrimidine kinase 4257220..4258068 Bordetella parapertussis 12822 1666451 NP_886085.1 CDS thiE NC_002928.3 4258065 4258718 D Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 4258065..4258718 Bordetella parapertussis 12822 1666452 NP_886086.1 CDS hemL NC_002928.3 4258735 4260018 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 4258735..4260018 Bordetella parapertussis 12822 1666453 NP_886087.1 CDS BPP3937 NC_002928.3 4260259 4261884 D ortholog of Bordetella pertussis (BX470248) BP0314; hypothetical protein 4260259..4261884 Bordetella parapertussis 12822 1666454 NP_886088.1 CDS BPP3938 NC_002928.3 4261978 4262379 R ortholog of Bordetella pertussis (BX470248) BP0313; hypothetical protein complement(4261978..4262379) Bordetella parapertussis 12822 1666455 NP_886089.1 CDS BPP3939 NC_002928.3 4262404 4262838 R ortholog of Bordetella pertussis (BX470248) BP0312; 4-hydroxybenzoyl CoA thioesterase complement(4262404..4262838) Bordetella parapertussis 12822 1666456 NP_886090.1 CDS BPP3940 NC_002928.3 4262840 4264489 R ortholog of Bordetella pertussis (BX470248) BP0311; acid-coenzyme A ligase complement(4262840..4264489) Bordetella parapertussis 12822 1666457 NP_886091.1 CDS BPP3941 NC_002928.3 4264530 4265699 R ortholog of Bordetella pertussis (BX470248) BP0310; acyl-CoA dehydrogenase complement(4264530..4265699) Bordetella parapertussis 12822 1666458 NP_886092.1 CDS BPP3943 NC_002928.3 4266524 4267315 R ortholog of Bordetella pertussis (BX470248) BP0308; short chain dehydrogenase complement(4266524..4267315) Bordetella parapertussis 12822 1665376 NP_886093.1 CDS BPP3944 NC_002928.3 4267312 4269663 R catalyzes the conversion of salicylyl-CoA to gentisyl-CoA; salicylyl-CoA 5-hydroxylase complement(4267312..4269663) Bordetella parapertussis 12822 1665377 NP_886094.1 CDS BPP3945 NC_002928.3 4269869 4270462 R ortholog of Bordetella pertussis (BX470248) BP0305; high-affinity branched-chain amino acid transport ATP-binding protein complement(4269869..4270462) Bordetella parapertussis 12822 1665378 NP_886095.1 CDS BPP3946 NC_002928.3 4270565 4271359 R ortholog of Bordetella pertussis (BX470248) BP0304; branched-chain amino acid transporter ATP-binding protein complement(4270565..4271359) Bordetella parapertussis 12822 1665379 NP_886096.1 CDS BPP3947 NC_002928.3 4271356 4272321 R ortholog of Bordetella pertussis (BX470248) BP0303; branched chain amino acid ABC transporter permease complement(4271356..4272321) Bordetella parapertussis 12822 1665380 NP_886097.1 CDS BPP3949 NC_002928.3 4273338 4274501 R ortholog of Bordetella pertussis (BX470248) BP0301; ABC transporter substrate binding protein complement(4273338..4274501) Bordetella parapertussis 12822 1664829 NP_886098.1 CDS BPP3950 NC_002928.3 4274724 4275614 D ortholog of Bordetella pertussis (BX470248) BP0300; esterase 4274724..4275614 Bordetella parapertussis 12822 1664830 NP_886099.1 CDS BPP3951 NC_002928.3 4275618 4276121 D ortholog of Bordetella pertussis (BX470248) BP0299; MarR family transcriptional regulator 4275618..4276121 Bordetella parapertussis 12822 1664831 NP_886100.1 CDS BPP3952 NC_002928.3 4276164 4277162 D ortholog of Bordetella pertussis (BX470248) BP0298; hypothetical protein 4276164..4277162 Bordetella parapertussis 12822 1664832 NP_886101.1 CDS argJ NC_002928.3 4277230 4278456 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 4277230..4278456 Bordetella parapertussis 12822 1664833 NP_886102.1 CDS BPP3954 NC_002928.3 4278656 4279522 D ortholog of Bordetella pertussis (BX470248) BP3808; hypothetical protein 4278656..4279522 Bordetella parapertussis 12822 1664834 NP_886103.1 CDS BPP3955 NC_002928.3 4279515 4280477 D ortholog of Bordetella pertussis (BX470248) BP3809; hypothetical protein 4279515..4280477 Bordetella parapertussis 12822 1664835 NP_886104.1 CDS BPP3956 NC_002928.3 4280488 4281990 R ortholog of Bordetella pertussis (BX470248) BP3812; outer membrane efflux protein complement(4280488..4281990) Bordetella parapertussis 12822 1664836 NP_886105.1 CDS BPP3957 NC_002928.3 4281987 4285094 R ortholog of Bordetella pertussis (BX470248) BP3813; AcrB/AcrD/AcrF family protein complement(4281987..4285094) Bordetella parapertussis 12822 1664837 NP_886106.1 CDS BPP3958 NC_002928.3 4285091 4288192 R ortholog of Bordetella pertussis (BX470248) BP3814; AcrB/AcrD/AcrF family protein complement(4285091..4288192) Bordetella parapertussis 12822 1664838 NP_886107.1 CDS BPP3959 NC_002928.3 4288189 4289439 R ortholog of Bordetella pertussis (BX470248) BP3815; HlyD family secretion protein complement(4288189..4289439) Bordetella parapertussis 12822 1665521 NP_886108.1 CDS BPP3960 NC_002928.3 4289620 4290381 R ortholog of Bordetella pertussis (BX470248) BP3816; hypothetical protein complement(4289620..4290381) Bordetella parapertussis 12822 1665522 NP_886109.1 CDS coaE NC_002928.3 4290414 4291070 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(4290414..4291070) Bordetella parapertussis 12822 1665523 NP_886110.1 CDS BPP3962 NC_002928.3 4291067 4292059 R ortholog of Bordetella pertussis (BX470248) BP3818; type 4 prepilin-like proteins leader peptide processing enzyme complement(4291067..4292059) Bordetella parapertussis 12822 1665524 NP_886111.1 CDS BPP3963 NC_002928.3 4292159 4292902 D ortholog of Bordetella pertussis (BX470248) BP3819; hypothetical protein 4292159..4292902 Bordetella parapertussis 12822 1665525 NP_886112.1 CDS BPP3964 NC_002928.3 4292985 4293332 R ortholog of Bordetella pertussis (BX470248) BP3820; regulatory protein complement(4292985..4293332) Bordetella parapertussis 12822 1665526 NP_886113.1 CDS panC NC_002928.3 4293430 4294272 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(4293430..4294272) Bordetella parapertussis 12822 1665527 NP_886114.1 CDS BPP3966 NC_002928.3 4294317 4295204 R ortholog of Bordetella pertussis (BX470248) BP3822; hypothetical protein complement(4294317..4295204) Bordetella parapertussis 12822 1665528 NP_886115.1 CDS BPP3967 NC_002928.3 4295231 4295419 R ortholog of Bordetella pertussis (BX470248) BP3823; hypothetical protein complement(4295231..4295419) Bordetella parapertussis 12822 1665529 NP_886116.1 CDS glpK NC_002928.3 4296962 4298488 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 4296962..4298488 Bordetella parapertussis 12822 1667633 NP_886117.1 CDS BPP3970 NC_002928.3 4298507 4298974 R ortholog of Bordetella pertussis (BX470248) BP3826; hypothetical protein complement(4298507..4298974) Bordetella parapertussis 12822 1667634 NP_886118.1 CDS BPP3971 NC_002928.3 4298974 4299996 R ortholog of Bordetella pertussis (BX470248) BP3827; hypothetical protein complement(4298974..4299996) Bordetella parapertussis 12822 1667635 NP_886119.1 CDS BPP3972 NC_002928.3 4300117 4300857 R ortholog of Bordetella pertussis (BX470248) BP3828; amino acid ABC transporter ATP-binding protein complement(4300117..4300857) Bordetella parapertussis 12822 1667636 NP_886120.1 CDS BPP3973 NC_002928.3 4300912 4302012 R ortholog of Bordetella pertussis (BX470248) BP3829; amino acid ABC transporter permease complement(4300912..4302012) Bordetella parapertussis 12822 1667637 NP_886121.1 CDS BPP3974 NC_002928.3 4302014 4303204 R ortholog of Bordetella pertussis (BX470248) BP3830; amino acid ABC transporter permease complement(4302014..4303204) Bordetella parapertussis 12822 1667638 NP_886122.1 CDS BPP3975 NC_002928.3 4303324 4304340 R ortholog of Bordetella pertussis (BX470248) BP3831; ABC transporter periplasmic amino acid-binding protein complement(4303324..4304340) Bordetella parapertussis 12822 1667639 NP_886123.1 CDS ftsE NC_002928.3 4304659 4305330 D ortholog of Bordetella pertussis (BX470248) BP3832; cell division ATP-binding protein 4304659..4305330 Bordetella parapertussis 12822 1665585 NP_886124.1 CDS BPP3977 NC_002928.3 4305327 4306235 D ortholog of Bordetella pertussis (BX470248) BP3833; permease 4305327..4306235 Bordetella parapertussis 12822 1665586 NP_886125.1 CDS BPP3978 NC_002928.3 4306447 4307085 D catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 4306447..4307085 Bordetella parapertussis 12822 1665587 NP_886126.1 CDS BPP3979 NC_002928.3 4307218 4310892 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(4307218..4310892) Bordetella parapertussis 12822 1665588 NP_886127.1 CDS mutY NC_002928.3 4310975 4312051 D ortholog of Bordetella pertussis (BX470248) BP3836; A/G-specific adenine glycosylase 4310975..4312051 Bordetella parapertussis 12822 1665589 NP_886128.1 CDS BPP3981 NC_002928.3 4312062 4312871 R ortholog of Bordetella pertussis (BX470248) BP3837; hypothetical protein complement(4312062..4312871) Bordetella parapertussis 12822 1665590 NP_886129.1 CDS metH NC_002928.3 4313853 4317626 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(4313853..4317626) Bordetella parapertussis 12822 1665592 NP_886130.1 CDS BPP3984 NC_002928.3 4317963 4319852 D ortholog of Bordetella pertussis (BX470248) BP3595; outer membrane protein 4317963..4319852 Bordetella parapertussis 12822 1665593 NP_886131.1 CDS BPP3985 NC_002928.3 4319864 4320688 D ortholog of Bordetella pertussis (BX470248) BP3596; periplasmic binding protein 4319864..4320688 Bordetella parapertussis 12822 1665594 NP_886132.1 CDS thiG NC_002928.3 4320714 4321589 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4320714..4321589 Bordetella parapertussis 12822 1665595 NP_886133.1 CDS thiD NC_002928.3 4321586 4322437 D ortholog of Bordetella pertussis (BX470248) BP3598; phosphomethylpyrimidine kinase 4321586..4322437 Bordetella parapertussis 12822 1665596 NP_886134.1 CDS BPP3988 NC_002928.3 4322499 4323179 D ortholog of Bordetella pertussis (BX470248) BP3599; protein-L-isoaspartate O-methyltransferase 4322499..4323179 Bordetella parapertussis 12822 1665597 NP_886135.1 CDS BPP3989 NC_002928.3 4323183 4324502 D ortholog of Bordetella pertussis (BX470248) BP3600; outer membrane protein 4323183..4324502 Bordetella parapertussis 12822 1665598 NP_886136.1 CDS BPP3990 NC_002928.3 4324523 4325011 R ortholog of Bordetella pertussis (BX470248) BP3602; cytidylyltransferase complement(4324523..4325011) Bordetella parapertussis 12822 1664707 NP_886137.1 CDS BPP3991 NC_002928.3 4325165 4326043 R ortholog of Bordetella pertussis (BX470248) BP0165; hypothetical protein complement(4325165..4326043) Bordetella parapertussis 12822 1664708 NP_886138.1 CDS ubiB NC_002928.3 4326218 4327780 R an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; ubiquinone biosynthesis protein UbiB complement(4326218..4327780) Bordetella parapertussis 12822 1664709 NP_886139.1 CDS BPP3993 NC_002928.3 4327777 4328412 R ortholog of Bordetella pertussis (BX470248) BP0163; hypothetical protein complement(4327777..4328412) Bordetella parapertussis 12822 1664710 NP_886140.1 CDS BPP3994 NC_002928.3 4328641 4329663 R ortholog of Bordetella pertussis (BX470248) BP0162; hypothetical protein complement(4328641..4329663) Bordetella parapertussis 12822 1664711 NP_886141.1 CDS ubiE NC_002928.3 4329829 4330605 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(4329829..4330605) Bordetella parapertussis 12822 1664712 NP_886142.1 CDS phoB NC_002928.3 4330829 4331470 D ortholog of Bordetella pertussis (BX470248) BP0160; phosphate regulon transcriptional regulatory protein 4330829..4331470 Bordetella parapertussis 12822 1664713 NP_886143.1 CDS phoR NC_002928.3 4331482 4332792 D ortholog of Bordetella pertussis (BX470248) BP0159; phosphate regulon sensor protein 4331482..4332792 Bordetella parapertussis 12822 1664714 NP_886144.1 CDS BPP3998 NC_002928.3 4332848 4333525 D ortholog of Bordetella pertussis (BX470248) BP0158; two-component response regulator 4332848..4333525 Bordetella parapertussis 12822 1665957 NP_886145.1 CDS BPP3999 NC_002928.3 4333522 4334919 D ortholog of Bordetella pertussis (BX470248) BP0157; two-component sensor kinase 4333522..4334919 Bordetella parapertussis 12822 1665958 NP_886146.1 CDS BPP4000 NC_002928.3 4335025 4335486 D ortholog of Bordetella pertussis (BX470248) BP0156; hypothetical protein 4335025..4335486 Bordetella parapertussis 12822 1665959 NP_886147.1 CDS serA NC_002928.3 4335567 4336787 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 4335567..4336787 Bordetella parapertussis 12822 1665960 NP_886148.1 CDS brg1 NC_002928.3 4336833 4337708 R ortholog of Bordetella pertussis (BX470248) BP0154; LysR family transcriptional regulator complement(4336833..4337708) Bordetella parapertussis 12822 1665961 NP_886149.1 CDS BPP4003 NC_002928.3 4337810 4338241 D ortholog of Bordetella pertussis (BX470248) BP0153; dioxygenase 4337810..4338241 Bordetella parapertussis 12822 1665962 NP_886150.1 CDS BPP4004 NC_002928.3 4338260 4338994 D ortholog of Bordetella pertussis (BX470248) BP0152; hypothetical protein 4338260..4338994 Bordetella parapertussis 12822 1665963 NP_886151.1 CDS BPP4005 NC_002928.3 4338991 4340004 D ortholog of Bordetella pertussis (BX470248) BP0151; hypothetical protein 4338991..4340004 Bordetella parapertussis 12822 1665964 NP_886152.1 CDS BPP4006 NC_002928.3 4340001 4340759 D ortholog of Bordetella pertussis (BX470248) BP0150; LamB/YcsF family protein 4340001..4340759 Bordetella parapertussis 12822 1665965 NP_886153.1 CDS BPP4007 NC_002928.3 4340770 4341552 R ortholog of Bordetella pertussis (BX470248) BP0149; transcriptional regulator complement(4340770..4341552) Bordetella parapertussis 12822 1665966 NP_886154.1 CDS BPP4008 NC_002928.3 4341719 4342642 D ortholog of Bordetella pertussis (BX470248) BP0148; hypothetical protein 4341719..4342642 Bordetella parapertussis 12822 1665967 NP_886155.1 CDS BPP4009 NC_002928.3 4342705 4343925 D ortholog of Bordetella pertussis (BX470248) BP0146; hydroxylase 4342705..4343925 Bordetella parapertussis 12822 1665968 NP_886156.1 CDS BPP4010 NC_002928.3 4343946 4344758 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 4343946..4344758 Bordetella parapertussis 12822 1666078 NP_886157.1 CDS BPP4011 NC_002928.3 4344764 4345699 D ortholog of Bordetella pertussis (BX470248) BP0144; lipase 4344764..4345699 Bordetella parapertussis 12822 1666079 NP_886158.1 CDS BPP4013 NC_002928.3 4347004 4347789 R ortholog of Bordetella pertussis (BX470248) BP0142; GntR family transcriptional regulator complement(4347004..4347789) Bordetella parapertussis 12822 1666081 NP_886159.1 CDS BPP4014 NC_002928.3 4347842 4351804 R ortholog of Bordetella pertussis (BX470248) BP0141; iron-sulfur binding oxidase complement(4347842..4351804) Bordetella parapertussis 12822 1666082 NP_886160.1 CDS BPP4015 NC_002928.3 4351928 4352464 R ortholog of Bordetella pertussis (BX470248) BP0140; hypothetical protein complement(4351928..4352464) Bordetella parapertussis 12822 1666083 NP_886161.1 CDS ilvA NC_002928.3 4352551 4354059 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4352551..4354059 Bordetella parapertussis 12822 1666084 NP_886162.1 CDS BPP4017 NC_002928.3 4354149 4355255 R ortholog of Bordetella pertussis (BX470248) BP0267+BP0138; Similar to Bordetella pertussis outer membrane porin protein precursor SWALL:OMP_BORPE (SWALL:Q04064) (385 aa) fasta scores: E(): 1.2e-72, 59.89% id in 389 aa, and to Ralstonia solanacearum probable porin signal peptide protein RS02026 SWALL:Q8XTQ5 (EMBL:AL646076) (382 aa) fasta scores: E(): 4.3e-23, 31.19% id in 359 aa; outer membrane porin complement(4354149..4355255) Bordetella parapertussis 12822 1666085 NP_886163.1 CDS BPP4018 NC_002928.3 4355465 4355848 R ortholog of Bordetella pertussis (BX470248) BP0266; hypothetical protein complement(4355465..4355848) Bordetella parapertussis 12822 1666086 NP_886164.1 CDS BPP4019 NC_002928.3 4356092 4356982 D ortholog of Bordetella pertussis (BX470248) BP0265; LysR family transcriptional regulator 4356092..4356982 Bordetella parapertussis 12822 1666821 NP_886165.1 CDS apt NC_002928.3 4356995 4357570 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(4356995..4357570) Bordetella parapertussis 12822 1666822 NP_886166.1 CDS BPP4021 NC_002928.3 4357606 4359285 R ortholog of Bordetella pertussis (BX470248) BP0263; ABC transporter ATP-binding protein complement(4357606..4359285) Bordetella parapertussis 12822 1666823 NP_886167.1 CDS BPP4022 NC_002928.3 4359282 4361033 R ortholog of Bordetella pertussis (BX470248) BP0262; ABC transporter ATP-binding protein complement(4359282..4361033) Bordetella parapertussis 12822 1666824 NP_886168.1 CDS BPP4023 NC_002928.3 4361030 4361155 R ortholog of Bordetella pertussis (BX470248) BP0261; hypothetical protein complement(4361030..4361155) Bordetella parapertussis 12822 1666825 NP_886169.1 CDS cydB NC_002928.3 4361169 4362323 R ortholog of Bordetella pertussis (BX470248) BP0260; cytochrome D ubiquinol oxidase subunit II complement(4361169..4362323) Bordetella parapertussis 12822 1666826 NP_886170.1 CDS cydA NC_002928.3 4362339 4363958 R ortholog of Bordetella pertussis (BX470248) BP0259; cytochrome D ubiquinol oxidase subunit I complement(4362339..4363958) Bordetella parapertussis 12822 1667488 NP_886171.1 CDS BPP4026 NC_002928.3 4364042 4364587 R ortholog of Bordetella pertussis (BX470248) BP0258; hypothetical protein complement(4364042..4364587) Bordetella parapertussis 12822 1667489 NP_886172.1 CDS purT NC_002928.3 4364730 4365950 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(4364730..4365950) Bordetella parapertussis 12822 1667490 NP_886173.1 CDS BPP4028 NC_002928.3 4366056 4367045 D ortholog of Bordetella pertussis (BX470248) BP0701; hypothetical protein 4366056..4367045 Bordetella parapertussis 12822 1667491 NP_886174.1 CDS BPP4029 NC_002928.3 4367042 4367650 D ortholog of Bordetella pertussis (BX470248) BP0700; hydrolase 4367042..4367650 Bordetella parapertussis 12822 1667492 NP_886175.1 CDS BPP4030 NC_002928.3 4367663 4368292 D ortholog of Bordetella pertussis (BX470248) BP0699; hypothetical protein 4367663..4368292 Bordetella parapertussis 12822 1667493 NP_886176.1 CDS BPP4031 NC_002928.3 4368289 4368909 D ortholog of Bordetella pertussis (BX470248) BP0698; hypothetical protein 4368289..4368909 Bordetella parapertussis 12822 1667494 NP_886177.1 CDS BPP4032 NC_002928.3 4368941 4369732 D ortholog of Bordetella pertussis (BX470248) BP0697; ABC transporter 4368941..4369732 Bordetella parapertussis 12822 1667495 NP_886178.1 CDS rpoN NC_002928.3 4369968 4370306 D ortholog of Bordetella pertussis (BX470248) BP0696; sigma(54) modulation protein 4369968..4370306 Bordetella parapertussis 12822 1667496 NP_886179.1 CDS rpoP NC_002928.3 4370574 4371038 D ortholog of Bordetella pertussis (BX470248) BP0694; nitrogen regulatory IIA protein 4370574..4371038 Bordetella parapertussis 12822 1667497 NP_886180.1 CDS BPP4035 NC_002928.3 4371057 4371983 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 4371057..4371983 Bordetella parapertussis 12822 1667412 NP_886181.1 CDS BPP4036 NC_002928.3 4372087 4373370 R ortholog of Bordetella pertussis (BX470248) BP0692; cytochrome C complement(4372087..4373370) Bordetella parapertussis 12822 1667413 NP_886182.1 CDS BPP4037 NC_002928.3 4373381 4374133 R ortholog of Bordetella pertussis (BX470248) BP0691; cytochrome C complement(4373381..4374133) Bordetella parapertussis 12822 1667414 NP_886183.1 CDS BPP4038 NC_002928.3 4374305 4375177 D ortholog of Bordetella pertussis (BX470248) BP0690; hypothetical protein 4374305..4375177 Bordetella parapertussis 12822 1667415 NP_886184.1 CDS BPP4039 NC_002928.3 4375174 4376124 D ortholog of Bordetella pertussis (BX470248) BP0689; lipoprotein 4375174..4376124 Bordetella parapertussis 12822 1667416 NP_886185.1 CDS ogt NC_002928.3 4376121 4376693 R ortholog of Bordetella pertussis (BX470248) BP0391; methylated-DNA--protein-cysteine methyltransferase complement(4376121..4376693) Bordetella parapertussis 12822 1667417 NP_886186.1 CDS BPP4041 NC_002928.3 4376690 4377628 R ortholog of Bordetella pertussis (BX470248) BP0390; tetrapyrrole methylase complement(4376690..4377628) Bordetella parapertussis 12822 1667418 NP_886187.1 CDS BPP4042 NC_002928.3 4377695 4378228 D ortholog of Bordetella pertussis (BX470248) BP0389; hypothetical protein 4377695..4378228 Bordetella parapertussis 12822 1667419 NP_886188.1 CDS BPP4043 NC_002928.3 4378228 4378830 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 4378228..4378830 Bordetella parapertussis 12822 1667420 NP_886189.1 CDS BPP4044 NC_002928.3 4378827 4379570 D ortholog of Bordetella pertussis (BX470248) BP0387; hypothetical protein 4378827..4379570 Bordetella parapertussis 12822 1665710 NP_886190.1 CDS BPP4045 NC_002928.3 4379567 4380058 D ortholog of Bordetella pertussis (BX470248) BP0386; thioredoxin 4379567..4380058 Bordetella parapertussis 12822 1665711 NP_886191.1 CDS BPP4046 NC_002928.3 4380154 4380942 R ortholog of Bordetella pertussis (BX470248) BP0385; hypothetical protein complement(4380154..4380942) Bordetella parapertussis 12822 1665712 NP_886192.2 CDS argB NC_002928.3 4381204 4382106 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4381204..4382106 Bordetella parapertussis 12822 1665713 NP_886193.1 CDS BPP4048 NC_002928.3 4382103 4382852 D ortholog of Bordetella pertussis (BX470248) BP0382; hydrolase 4382103..4382852 Bordetella parapertussis 12822 1665714 NP_886194.1 CDS BPP4050 NC_002928.3 4383689 4385182 D ortholog of Bordetella pertussis (BX470248) BP0380; Sodium:sulfate symportert 4383689..4385182 Bordetella parapertussis 12822 1665716 NP_886195.1 CDS ldh NC_002928.3 4385193 4386248 D ortholog of Bordetella pertussis (BX470248) BP0379; L-lactate dehydrogenase 4385193..4386248 Bordetella parapertussis 12822 1665717 NP_886196.1 CDS mrdB NC_002928.3 4386274 4387410 R ortholog of Bordetella pertussis (BX470248) BP0378; rod shape-determining protein complement(4386274..4387410) Bordetella parapertussis 12822 1665718 NP_886197.1 CDS mrdA NC_002928.3 4387407 4389359 R ortholog of Bordetella pertussis (BX470248) BP0377; penicillin-binding protein 2 complement(4387407..4389359) Bordetella parapertussis 12822 1665719 NP_886198.1 CDS mreD NC_002928.3 4389373 4389936 R ortholog of Bordetella pertussis (BX470248) BP0376; rod shape-determining protein complement(4389373..4389936) Bordetella parapertussis 12822 1665720 NP_886199.1 CDS mreC NC_002928.3 4389923 4390807 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(4389923..4390807) Bordetella parapertussis 12822 1668111 NP_886200.1 CDS mreB NC_002928.3 4390896 4391939 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(4390896..4391939) Bordetella parapertussis 12822 1668112 NP_886201.2 CDS gatC NC_002928.3 4392170 4392478 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 4392170..4392478 Bordetella parapertussis 12822 1668113 NP_886202.1 CDS gatA NC_002928.3 4392481 4394019 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 4392481..4394019 Bordetella parapertussis 12822 1668114 NP_886203.1 CDS gatB NC_002928.3 4394022 4395476 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 4394022..4395476 Bordetella parapertussis 12822 1668115 NP_886204.1 CDS pyrE NC_002928.3 4395560 4396267 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(4395560..4396267) Bordetella parapertussis 12822 1668116 NP_886205.1 CDS BPP4061 NC_002928.3 4396372 4397160 D ortholog of Bordetella pertussis (BX470248) BP0369; endonuclease 4396372..4397160 Bordetella parapertussis 12822 1668117 NP_886206.1 CDS BPP4063 NC_002928.3 4398962 4399600 R ortholog of Bordetella pertussis (BX470248) BP0367; hypothetical protein complement(4398962..4399600) Bordetella parapertussis 12822 1665648 NP_886207.1 CDS BPP4064 NC_002928.3 4399791 4400657 D ortholog of Bordetella pertussis (BX470248) BP0366; universal stress protein 4399791..4400657 Bordetella parapertussis 12822 1665649 NP_886208.1 CDS BPP4065 NC_002928.3 4400757 4401671 R Similar to Yersinia pestis llysr-family transcriptional regulatory protein YPO2497 SWALL:Q8ZDQ9 (EMBL:AJ414152) (313 aa) fasta scores: E(): 1.4e-67, 57.96% id in 295 aa, and to Escherichia coli hypothetical transcriptional regulator YeaT SWALL:YEAT_ECOLI (SWALL:P76250) (307 aa) fasta scores: E(): 3.3e-67, 57.28% id in 295 aa; LysR family regulatory protein complement(4400757..4401671) Bordetella parapertussis 12822 1665650 NP_886209.1 CDS BPP4066 NC_002928.3 4401768 4402859 D Similar to Pseudomonas putida tartrate dehydrogenase SWALL:TTUC_PSEPU (SWALL:Q51945) (364 aa) fasta scores: E(): 1e-100, 69.27% id in 358 aa, and to Ralstonia solanacearum probable tartrate dehydrogenase oxidoreductase RS02169 SWALL:Q8XPM6 (EMBL:AL646086) (361 aa) fasta scores: E(): 1.6e-117, 80.44% id in 358 aa; tartrate dehydrogenase 4401768..4402859 Bordetella parapertussis 12822 1665651 NP_886210.1 CDS BPP4068 NC_002928.3 4404364 4404798 R Poor database matches. Similar to Rhizobium meliloti hypothetical signal peptide protein SMC00921 SWALL:Q92KL7 (EMBL:AL591784) (128 aa) fasta scores: E(): 8.1e-07, 37.6% id in 125 aa; hypothetical protein complement(4404364..4404798) Bordetella parapertussis 12822 1665653 NP_886211.1 CDS BPP4073 NC_002928.3 4407034 4408026 R Similar to Alcaligenes eutrophus rubisco operon transcriptional regulator CfxR SWALL:CFXR_ALCEU (SWALL:P42722) (317 aa) fasta scores: E(): 1.2e-05, 25.44% id in 283 aa, and to Agrobacterium tumefaciens transcriptional regulator, LysR family AGR_C_4564 SWALL:AAL43499 (EMBL:AE009197) (306 aa) fasta scores: E(): 9.8e-27, 34.08% id in 311 aa; LysR family regulatory protein complement(4407034..4408026) Bordetella parapertussis 12822 1665656 NP_886212.1 CDS BPP4074 NC_002928.3 4408130 4409155 D catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 4408130..4409155 Bordetella parapertussis 12822 1665657 NP_886213.1 CDS BPP4075 NC_002928.3 4409249 4410148 D ortholog of Bordetella pertussis (BX470248) BP0057; amino-acid ABC transporter binding protein precursor 4409249..4410148 Bordetella parapertussis 12822 1665658 NP_886214.1 CDS gltJ NC_002928.3 4410291 4411052 D ortholog of Bordetella pertussis (BX470248) BP0056; glutamate/aspartate transport system permease 4410291..4411052 Bordetella parapertussis 12822 1665439 NP_886215.1 CDS gltK NC_002928.3 4411049 4411735 D ortholog of Bordetella pertussis (BX470248) BP0055; glutamate/aspartate transport system permease 4411049..4411735 Bordetella parapertussis 12822 1665440 NP_886216.1 CDS gltL NC_002928.3 4411760 4412494 D ortholog of Bordetella pertussis (BX470248) BP0054; glutamate/aspartate transport ATP-binding protein 4411760..4412494 Bordetella parapertussis 12822 1665441 NP_886217.1 CDS BPP4079 NC_002928.3 4412500 4413234 D ortholog of Bordetella pertussis (BX470248) BP0053; aspartate/glutamate racemase 4412500..4413234 Bordetella parapertussis 12822 1665442 NP_886218.1 CDS BPP4080 NC_002928.3 4413254 4414318 R ortholog of Bordetella pertussis (BX470248) BP0051; outer membrane porin protein precursor complement(4413254..4414318) Bordetella parapertussis 12822 1665443 NP_886219.1 CDS ampG NC_002928.3 4414430 4415641 R ortholog of Bordetella pertussis (BX470248) BP0050; muropeptide transporter complement(4414430..4415641) Bordetella parapertussis 12822 1665444 NP_886220.1 CDS BPP4082 NC_002928.3 4415766 4416380 R ortholog of Bordetella pertussis (BX470248) BP0048; hypothetical protein complement(4415766..4416380) Bordetella parapertussis 12822 1667594 NP_886221.1 CDS metX NC_002928.3 4416377 4417624 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(4416377..4417624) Bordetella parapertussis 12822 1667595 NP_886222.1 CDS BPP4084 NC_002928.3 4417788 4418795 D ortholog of Bordetella pertussis (BX470248) BP0046; malate/L-lactate dehydrogenase 4417788..4418795 Bordetella parapertussis 12822 1667596 NP_886223.1 CDS BPP4085 NC_002928.3 4418799 4419689 R ortholog of Bordetella pertussis (BX470248) BP0045; hypothetical protein complement(4418799..4419689) Bordetella parapertussis 12822 1667597 NP_886224.1 CDS BPP4086 NC_002928.3 4419817 4420053 D ortholog of Bordetella pertussis (BX470248) BP0044; transcriptional regulator 4419817..4420053 Bordetella parapertussis 12822 1667598 NP_886225.1 CDS BPP4087 NC_002928.3 4420025 4420660 R ortholog of Bordetella pertussis (BX470248) BP0043; hypothetical protein complement(4420025..4420660) Bordetella parapertussis 12822 1667599 NP_886226.1 CDS BPP4088 NC_002928.3 4420686 4421519 D ortholog of Bordetella pertussis (BX470248) BP0042; lipase 4420686..4421519 Bordetella parapertussis 12822 1667600 NP_886227.1 CDS gshA NC_002928.3 4421553 4423136 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 4421553..4423136 Bordetella parapertussis 12822 1667601 NP_886228.1 CDS BPP4090 NC_002928.3 4423202 4423720 D Similar to Escherichia coli outer membrane lipoprotein precursor Blc SWALL:BLC_ECOLI (SWALL:P39281) (177 aa) fasta scores: E(): 3.1e-15, 39.65% id in 174 aa, and to Caulobacter crescentus outer membrane lipoprotein CC3478 SWALL:Q9A2S8 (EMBL:AE006006) (181 aa) fasta scores: E(): 9.2e-21, 43.19% id in 169 aa; outer membrane lipoprotein 4423202..4423720 Bordetella parapertussis 12822 1667602 NP_886229.1 CDS BPP4091 NC_002928.3 4423717 4424685 R Poor database matches. C-terminus is weakly similar to the C-terminal region of Bacillus halodurans oligopeptide ABC transporter BH0351 SWALL:Q9KFW9 (EMBL:AP001508) (332 aa) fasta scores: E(): 1, 24.73% id in 279 aa; hypothetical protein complement(4423717..4424685) Bordetella parapertussis 12822 1667603 NP_886230.1 CDS BPP4092 NC_002928.3 4424715 4425701 R Similar to Agrobacterium tumefaciens hypothetical protein AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 2.4e-30, 35.6% id in 323 aa, and to Rhizobium meliloti hypothetical protein SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 4.2e-29, 33.02% id in 324 aa; hypothetical protein complement(4424715..4425701) Bordetella parapertussis 12822 1667604 NP_886231.1 CDS BPP4093 NC_002928.3 4425836 4426840 R ortholog of Bordetella pertussis (BX470248) BP2849; LysR family transcriptional regulator complement(4425836..4426840) Bordetella parapertussis 12822 1667605 NP_886232.1 CDS panB NC_002928.3 4426874 4427710 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 4426874..4427710 Bordetella parapertussis 12822 1667606 NP_886233.1 CDS BPP4095 NC_002928.3 4428188 4429333 D ortholog of Bordetella pertussis (BX470248) BP2851; outer membrane porin protein precursor 4428188..4429333 Bordetella parapertussis 12822 1667607 NP_886234.1 CDS BPP4096 NC_002928.3 4429466 4430512 R Similar to Escherichia coli mgl repressor and galactose ultrainduction factor GalS SWALL:GALS_ECOLI (SWALL:P25748) (346 aa) fasta scores: E(): 4.7e-25, 32.35% id in 340 aa, and to Agrobacterium tumefaciens LacI family transcriptional regulator AGR_PAT_567 SWALL:AAL46081 (EMBL:AE008961) (341 aa) fasta scores: E(): 2e-35, 38.39% id in 336 aa; LacI family transcriptional regulator complement(4429466..4430512) Bordetella parapertussis 12822 1667608 NP_886235.1 CDS BPP4097 NC_002928.3 4430640 4431512 D Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport system permease BraD SWALL:BRAD_PSEAE (SWALL:P21627) (307 aa) fasta scores: E(): 4.3e-21, 36.42% id in 302 aa, and to Streptococcus pneumoniae R6 ABC transporter membrane-spanning permease-branched chain amino acid transport LivH SWALL:AAK99464 (EMBL:AE008443) (292 aa) fasta scores: E(): 3.1e-33, 36.98% id in 292 aa; branched-chain amino acid ABC transporter permease 4430640..4431512 Bordetella parapertussis 12822 1667609 NP_886236.1 CDS BPP4098 NC_002928.3 4431541 4432449 D Similar to the C-terminal region of Salmonella typhimurium high-affinity branched-chain amino acid transport system permease LivM or LivE SWALL:LIVM_SALTY (SWALL:P30296) (425 aa) fasta scores: E(): 1.3e-12, 31.53% id in 333 aa, and to N-terminal region of Deinococcus radiodurans branched-chain amino acid ABC tranpsorter, ATP binding protein DRA0261 SWALL:Q9RYP8 (EMBL:AE001863) (587 aa) fasta scores: E(): 3.4e-24, 32.48% id in 314 aa; branched-chain amino acid ABC transporter permease 4431541..4432449 Bordetella parapertussis 12822 1667121 NP_886237.1 CDS BPP4099 NC_002928.3 4432452 4433216 D Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraF SWALL:BRAF_PSEAE (SWALL:P21629) (255 aa) fasta scores: E(): 7.9e-33, 45.38% id in 249 aa, and to Ralstonia solanacearum probable amino acid ATP-binding ABC transporter protein RS02664 SWALL:Q8XWN5 (EMBL:AL646070) (257 aa) fasta scores: E(): 1.3e-41, 52.38% id in 252 aa; high-affinity branched-chain amino acid transport ATP-binding protein 4432452..4433216 Bordetella parapertussis 12822 1667122 NP_886238.1 CDS BPP4100 NC_002928.3 4433209 4433922 D Similar to Pseudomonas aeruginosa high-affinity branched-chain amino acid transport ATP-binding protein BraG SWALL:BRAG_PSEAE (SWALL:P21630) (233 aa) fasta scores: E(): 1.3e-36, 52.13% id in 234 aa, and to Thermotoga maritima branched chain amino acid ABC transporter, ATP-binding protein TM1139 SWALL:Q9X0M3 (EMBL:AE001771) (239 aa) fasta scores: E(): 2.6e-36, 52.76% id in 235 aa; high-affinity branched-chain amino acid transport ATP-binding protein 4433209..4433922 Bordetella parapertussis 12822 1667123 NP_886239.1 CDS BPP4101 NC_002928.3 4433983 4435128 D ortholog of Bordetella pertussis (BX470248) BP3322; binding-protein-dependent transport protein 4433983..4435128 Bordetella parapertussis 12822 1667124 NP_886240.1 CDS BPP4102 NC_002928.3 4435203 4436531 D ortholog of Bordetella pertussis (BX470248) BP3321; amidase 4435203..4436531 Bordetella parapertussis 12822 1667125 NP_886241.1 CDS BPP4105 NC_002928.3 4437448 4438242 D ortholog of Bordetella pertussis (BX470248) BP3319; IclR family transcriptional regulator 4437448..4438242 Bordetella parapertussis 12822 1667127 NP_886242.1 CDS BPP4106 NC_002928.3 4438259 4439419 D ortholog of Bordetella pertussis (BX470248) BP3318; hypothetical protein 4438259..4439419 Bordetella parapertussis 12822 1667128 NP_886243.1 CDS BPP4107 NC_002928.3 4439416 4440159 D ortholog of Bordetella pertussis (BX470248) BP3317; enoyl-CoA hydratase/isomerase 4439416..4440159 Bordetella parapertussis 12822 1667129 NP_886244.1 CDS copB NC_002928.3 4440156 4441031 R ortholog of Bordetella pertussis (BX470248) BP3316; copper resistance protein complement(4440156..4441031) Bordetella parapertussis 12822 1667130 NP_886245.1 CDS copA NC_002928.3 4441078 4442835 R ortholog of Bordetella pertussis (BX470248) BP3315; copper resitance protein complement(4441078..4442835) Bordetella parapertussis 12822 1667131 NP_886246.1 CDS BPP4110 NC_002928.3 4442879 4443373 R ortholog of Bordetella pertussis (BX470248) BP3314; blue copper protein complement(4442879..4443373) Bordetella parapertussis 12822 1668091 NP_886247.1 CDS BPP4111 NC_002928.3 4443861 4444865 D Similar to Ralstonia solanacearum probable transmembrane protein RS00536 SWALL:Q8XUU9 (EMBL:AL646073) (294 aa) fasta scores: E(): 1.1e-39, 58.41% id in 303 aa. Internal region of the CDS is similar to to Chlorobium limicola f.sp. thiosulfatophilum cytochrome c-555 SWALL:C555_CHLLT (SWALL:P00123) (86 aa) fasta scores: E(): 0.00018, 50% id in 80 aa. CDS contains an alanine and proline rich region 200 to 248; cytochrome c 4443861..4444865 Bordetella parapertussis 12822 1668092 NP_886248.1 CDS BPP4114 NC_002928.3 4446639 4447868 R ortholog of Bordetella pertussis (BX470248) BP3309; hypothetical protein complement(4446639..4447868) Bordetella parapertussis 12822 1668094 NP_886249.1 CDS BPP4115 NC_002928.3 4447981 4449129 R ortholog of Bordetella pertussis (BX470248) BP3308; acyl-CoA dehydrogenase complement(4447981..4449129) Bordetella parapertussis 12822 1668095 NP_886250.1 CDS BPP4116 NC_002928.3 4449174 4449836 R ortholog of Bordetella pertussis (BX470248) BP3307; TetR family transcriptional repressor complement(4449174..4449836) Bordetella parapertussis 12822 1668096 NP_886251.1 CDS BPP4117 NC_002928.3 4449950 4450942 D ortholog of Bordetella pertussis (BX470248) BP3306; hypothetical protein 4449950..4450942 Bordetella parapertussis 12822 1664692 NP_886252.1 CDS BPP4118 NC_002928.3 4450939 4451676 D ortholog of Bordetella pertussis (BX470248) BP3305; enoyl-CoA hydratase/isomerase 4450939..4451676 Bordetella parapertussis 12822 1664693 NP_886253.1 CDS BPP4119 NC_002928.3 4451756 4452577 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4451756..4452577) Bordetella parapertussis 12822 1664694 NP_886254.1 CDS BPP4120 NC_002928.3 4452666 4453520 D ortholog of Bordetella pertussis (BX470248) BP3303; hypothetical protein 4452666..4453520 Bordetella parapertussis 12822 1664695 NP_886255.1 CDS BPP4121 NC_002928.3 4453648 4453884 D ortholog of Bordetella pertussis (BX470248) BP3302; hypothetical protein 4453648..4453884 Bordetella parapertussis 12822 1664696 NP_886256.1 CDS BPP4122 NC_002928.3 4454181 4455809 D ortholog of Bordetella pertussis (BX470248) BP3301; binding-protein-dependent transport protein 4454181..4455809 Bordetella parapertussis 12822 1664697 NP_886257.1 CDS BPP4123 NC_002928.3 4455858 4456901 D ortholog of Bordetella pertussis (BX470248) BP3300; hypothetical protein 4455858..4456901 Bordetella parapertussis 12822 1664698 NP_886258.1 CDS BPP4124 NC_002928.3 4456960 4457937 D ortholog of Bordetella pertussis (BX470248) BP3299; binding-protein-dependent transport permease 4456960..4457937 Bordetella parapertussis 12822 1664699 NP_886259.1 CDS BPP4125 NC_002928.3 4457945 4458865 D ortholog of Bordetella pertussis (BX470248) BP3298; binding-protein-dependent transport permease 4457945..4458865 Bordetella parapertussis 12822 1664700 NP_886260.1 CDS BPP4126 NC_002928.3 4458862 4459845 D ortholog of Bordetella pertussis (BX470248) BP3297; Similar to Bacillus subtilis oligopeptide transport ATP-binding protein AppD SWALL:APPD_BACSU (SWALL:P42064) (328 aa) fasta scores: E(): 7.1e-50, 48.1% id in 316 aa, and to Ralstonia solanacearum probable oligopeptide ATP-binding ABC transporter protein RS03444 SWALL:Q8XY79 (EMBL:AL646067) (332 aa) fasta scores: E(): 8.9e-67, 63.83% id in 318 aa; oligopeptide transport ATP-binding protein 4458862..4459845 Bordetella parapertussis 12822 1664701 NP_886261.1 CDS BPP4127 NC_002928.3 4459842 4460852 D ortholog of Bordetella pertussis (BX470248) BP3297; Similar to Bacillus subtilis oligopeptide transport ATP-binding protein AppF SWALL:APPF_BACSU (SWALL:P42065) (329 aa) fasta scores: E(): 1.5e-52, 50.91% id in 328 aa, and to Ralstonia solanacearum probable oligopeptide ATP-binding ABC transporter proteinRS03446 SWALL:Q8XY78 (EMBL:AL646067) (333 aa) fasta scores: E(): 4.1e-65, 59.58% id in 334 aa; oligopeptide transport ATP-binding protein 4459842..4460852 Bordetella parapertussis 12822 1664702 NP_886262.1 CDS BPP4128 NC_002928.3 4460855 4461760 D ortholog of Bordetella pertussis (BX470248) BP3296; hypothetical protein 4460855..4461760 Bordetella parapertussis 12822 1666011 NP_886263.1 CDS BPP4129 NC_002928.3 4461804 4462937 D ortholog of Bordetella pertussis (BX470248) BP3295; peptidase 4461804..4462937 Bordetella parapertussis 12822 1666012 NP_886264.1 CDS rep NC_002928.3 4463017 4465002 R ortholog of Bordetella pertussis (BX470248) BP3293; ATP-dependent DNA helicase complement(4463017..4465002) Bordetella parapertussis 12822 1666013 NP_886265.1 CDS BPP4131 NC_002928.3 4465129 4467231 R ortholog of Bordetella pertussis (BX470248) BP3292; primosomal protein complement(4465129..4467231) Bordetella parapertussis 12822 1666014 NP_886266.1 CDS hemE NC_002928.3 4467538 4468614 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(4467538..4468614) Bordetella parapertussis 12822 1666015 NP_886267.1 CDS BPP4133 NC_002928.3 4468690 4469604 R ortholog of Bordetella pertussis (BX470248) BP3290; hypothetical protein complement(4468690..4469604) Bordetella parapertussis 12822 1666016 NP_886268.1 CDS atpC NC_002928.3 4469754 4470176 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(4469754..4470176) Bordetella parapertussis 12822 1666017 NP_886269.1 CDS atpD NC_002928.3 4470186 4471586 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(4470186..4471586) Bordetella parapertussis 12822 1666018 NP_886270.1 CDS atpG NC_002928.3 4471629 4472534 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(4471629..4472534) Bordetella parapertussis 12822 1666019 NP_886271.1 CDS atpA NC_002928.3 4472633 4474174 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(4472633..4474174) Bordetella parapertussis 12822 1666020 NP_886272.1 CDS atpH NC_002928.3 4474209 4474748 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(4474209..4474748) Bordetella parapertussis 12822 1668206 NP_886273.1 CDS atpF NC_002928.3 4474761 4475231 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(4474761..4475231) Bordetella parapertussis 12822 1668207 NP_886274.1 CDS atpE NC_002928.3 4475369 4475611 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(4475369..4475611) Bordetella parapertussis 12822 1668208 NP_886275.1 CDS atpB NC_002928.3 4475728 4476609 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(4475728..4476609) Bordetella parapertussis 12822 1668209 NP_886276.1 CDS BPP4143 NC_002928.3 4477274 4478782 R ortholog of Bordetella pertussis (BX470248) BP3280; hypothetical protein complement(4477274..4478782) Bordetella parapertussis 12822 1668211 NP_886277.1 CDS BPP4144 NC_002928.3 4479079 4479855 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(4479079..4479855) Bordetella parapertussis 12822 1668212 NP_886278.1 CDS BPP4145 NC_002928.3 4479890 4481662 D ortholog of Bordetella pertussis (BX470248) BP3276; hypothetical protein 4479890..4481662 Bordetella parapertussis 12822 1668213 NP_886279.1 CDS BPP4146 NC_002928.3 4481664 4482566 R ortholog of Bordetella pertussis (BX470248) BP3275; oxidoreductase complement(4481664..4482566) Bordetella parapertussis 12822 1665411 NP_886280.1 CDS folB NC_002928.3 4482691 4483050 D ortholog of Bordetella pertussis (BX470248) BP3274; dihydroneopterin aldolase 4482691..4483050 Bordetella parapertussis 12822 1665412 NP_886281.1 CDS BPP4148 NC_002928.3 4483082 4484044 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 4483082..4484044 Bordetella parapertussis 12822 1665413 NP_886282.1 CDS BPP4149 NC_002928.3 4484057 4485025 R ortholog of Bordetella pertussis (BX470248) BP3271; 2-hydroxyacid dehydrogenase complement(4484057..4485025) Bordetella parapertussis 12822 1665414 NP_886283.1 CDS dsbC NC_002928.3 4485053 4485892 R ortholog of Bordetella pertussis (BX470248) BP3270; thiol:disulfide interchange protein (periplasmic) complement(4485053..4485892) Bordetella parapertussis 12822 1665415 NP_886284.1 CDS BPP4151 NC_002928.3 4485889 4487058 R ortholog of Bordetella pertussis (BX470248) BP3269; ubiquinone biosynthesis hydroxylase complement(4485889..4487058) Bordetella parapertussis 12822 1665416 NP_886285.1 CDS BPP4152 NC_002928.3 4487055 4488344 R ortholog of Bordetella pertussis (BX470248) BP3268; membrane-bound transglycosylase complement(4487055..4488344) Bordetella parapertussis 12822 1665417 NP_886286.1 CDS apaG NC_002928.3 4488387 4488782 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(4488387..4488782) Bordetella parapertussis 12822 1665418 NP_886287.1 CDS rpe NC_002928.3 4488867 4489604 D ortholog of Bordetella pertussis (BX470248) BP3266; ribulose-phosphate 3-epimerase 4488867..4489604 Bordetella parapertussis 12822 1665419 NP_886288.1 CDS gph NC_002928.3 4489612 4490316 D ortholog of Bordetella pertussis (BX470248) BP3265; phosphoglycolate phosphatase 4489612..4490316 Bordetella parapertussis 12822 1665420 NP_886289.1 CDS trpE NC_002928.3 4490532 4492100 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 4490532..4492100 Bordetella parapertussis 12822 1665722 NP_886290.1 CDS trpG NC_002928.3 4492156 4492719 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 4492156..4492719 Bordetella parapertussis 12822 1665723 NP_886291.1 CDS trpD NC_002928.3 4492738 4493769 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 4492738..4493769 Bordetella parapertussis 12822 1665724 NP_886292.1 CDS trpC NC_002928.3 4493766 4494554 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 4493766..4494554 Bordetella parapertussis 12822 1665725 NP_886293.1 CDS BPP4160 NC_002928.3 4494730 4495494 R Similar to Bacillus megaterium glucose 1-dehydrogenase SWALL:DHG_BACME (SWALL:P40288) (261 aa) fasta scores: E(): 9.5e-23, 35.36% id in 246 aa, and to Pseudomonas aeruginosa probable short-chain dehydrogenase PA3128 SWALL:Q9HZ96 (EMBL:AE004737) (248 aa) fasta scores: E(): 4e-59, 66.53% id in 245 aa; short chain dehydrogenase complement(4494730..4495494) Bordetella parapertussis 12822 1665726 NP_886294.1 CDS BPP4161 NC_002928.3 4495561 4496160 R Similar to Pseudomonas putida 2-hydroxychromene-2-carboxylate isomerase NahD SWALL:NAHD_PSEPU (SWALL:Q51948) (203 aa) fasta scores: E(): 1.2e-06, 30.85% id in 188 aa, and to Ralstonia solanacearum 2-hydroxychromene-2-carboxylate isomerase RS03240 SWALL:Q8Y2R2 (EMBL:AL646058) (201 aa) fasta scores: E(): 2.5e-18, 35.93% id in 192 aa; 2-hydroxychromene-2-carboxylate isomerase complement(4495561..4496160) Bordetella parapertussis 12822 1665727 NP_886295.1 CDS BPP4162 NC_002928.3 4496157 4496465 R Poor database matches. Weakly similar to an internal region of Similar to Synechococcus sp. hypothetical protein SWALL:YDJ2_SYNP7 (SWALL:O33701) (307 aa) fasta scores: E(): 9.3, 30.52% id in 95 aa; hypothetical protein complement(4496157..4496465) Bordetella parapertussis 12822 1665728 NP_886296.1 CDS BPP4163 NC_002928.3 4496553 4497482 D Similar to Pseudomonas syringae trpBA operon transcriptional activator TrpI SWALL:TRPI_PSESY (SWALL:P34818) (298 aa) fasta scores: E(): 2.6e-21, 32.31% id in 294 aa, and to Agrobacterium tumefaciens LysR family transcriptional regulator AGR_L_471 SWALL:AAL45440 (EMBL:AE009392) (298 aa) fasta scores: E(): 2.9e-26, 35.15% id in 293 aa; LysR family regulatory protein 4496553..4497482 Bordetella parapertussis 12822 1665729 NP_886297.1 CDS BPP4164 NC_002928.3 4497523 4498509 D Similar to Plesiomonas sp. M6 methyl parathion hydrolase Mpd SWALL:Q9ALW1 (EMBL:AF338729) (331 aa) fasta scores: E(): 5.4e-47, 45.75% id in 330 aa, and to Ralstonia solanacearum hypothetical protein RS01385 SWALL:Q8XXA2 (EMBL:AL646068) (339 aa) fasta scores: E(): 5.8e-76, 61.7% id in 329 aa; metallo-beta-lactamase superfamily protein 4497523..4498509 Bordetella parapertussis 12822 1665730 NP_886298.1 CDS BPP4165 NC_002928.3 4498659 4500077 D ortholog of Bordetella pertussis (BX470248) BP3258; hypothetical protein 4498659..4500077 Bordetella parapertussis 12822 1665731 NP_886299.1 CDS BPP4166 NC_002928.3 4500169 4500660 D Similar to Ralstonia solanacearum probable acyl-CoA thioester hydrolase-related protein RS05226 SWALL:Q8XTB0 (EMBL:AL646077) (164 aa) fasta scores: E(): 1.9e-45, 82.66% id in 150 aa, and to the C-terminal region of Rattus norvegicus cytosolic acyl coenzyme A thioester hydrolase SWALL:CTE2_RAT (SWALL:Q64559) (338 aa) fasta scores: E(): 6.3e-11, 33.54% id in 161 aa; acyl-CoA thioester hydrolase 4500169..4500660 Bordetella parapertussis 12822 1665732 NP_886300.1 CDS BPP4167 NC_002928.3 4500667 4501662 R Similar to Ralstonia solanacearum probable transmembrane protein RS02770 SWALL:Q8XZZ1 (EMBL:AL646063) (324 aa) fasta scores: E(): 2.6e-71, 54.03% id in 322 aa, and to Anabaena sp. hypothetical protein ALL2658 SWALL:Q8YTQ5 (EMBL:AP003590) (281 aa) fasta scores: E(): 1.9e-14, 29.55% id in 247 aa; hypothetical protein complement(4500667..4501662) Bordetella parapertussis 12822 1665733 NP_886301.1 CDS BPP4168 NC_002928.3 4501665 4502471 R Poor database matches. Similar to Ralstonia solanacearum probable lipoprotein signal peptide rsc1253 or rs02769 SWALL:Q8XZZ2 (EMBL:AL646063) (273 aa) fasta scores: E(): 1e-53, 56.03% id in 257 aa. Weakly similar to the N-terminal region of Streptomyces lividans acetylxylan esterase precursor AxeA SWALL:Q54413 (EMBL:M64552) (335 aa) fasta scores: E(): 0.039, 27.45% id in 255 aa; polysaccharide deacetylase complement(4501665..4502471) Bordetella parapertussis 12822 1665734 NP_886302.1 CDS BPP4169 NC_002928.3 4502455 4503444 R ortholog of Bordetella pertussis (BX470248) BP0364; hypothetical protein complement(4502455..4503444) Bordetella parapertussis 12822 1667847 NP_886303.1 CDS BPP4170 NC_002928.3 4503636 4504376 R ortholog of Bordetella pertussis (BX470248) BP0363; extracellular solute-binding protein complement(4503636..4504376) Bordetella parapertussis 12822 1667848 NP_886304.1 CDS BPP4171 NC_002928.3 4504495 4505505 R ortholog of Bordetella pertussis (BX470248) BP0362; CDP-6-deoxy-delta-3,4-glucoseen reductase complement(4504495..4505505) Bordetella parapertussis 12822 1667849 NP_886305.1 CDS BPP4172 NC_002928.3 4505524 4506003 R ortholog of Bordetella pertussis (BX470248) BP0361; hypothetical protein complement(4505524..4506003) Bordetella parapertussis 12822 1667850 NP_886306.1 CDS BPP4173 NC_002928.3 4506028 4507488 R ortholog of Bordetella pertussis (BX470248) BP0360; aldehyde dehydrogenase complement(4506028..4507488) Bordetella parapertussis 12822 1667851 NP_886307.1 CDS BPP4174 NC_002928.3 4507533 4508264 R ortholog of Bordetella pertussis (BX470248) BP0359; hypothetical protein complement(4507533..4508264) Bordetella parapertussis 12822 1667852 NP_886308.1 CDS BPP4176 NC_002928.3 4510028 4510771 D ortholog of Bordetella pertussis (BX470248) BP0357; hypothetical protein 4510028..4510771 Bordetella parapertussis 12822 1667854 NP_886309.1 CDS BPP4177 NC_002928.3 4510870 4511592 D ortholog of Bordetella pertussis (BX470248) BP0356; GntR family transcriptional regulator 4510870..4511592 Bordetella parapertussis 12822 1667855 NP_886310.1 CDS BPP4178 NC_002928.3 4511601 4512533 R ortholog of Bordetella pertussis (BX470248) BP0354; ornithine cyclodeaminase complement(4511601..4512533) Bordetella parapertussis 12822 1667856 NP_886311.1 CDS BPP4179 NC_002928.3 4512544 4512849 R ortholog of Bordetella pertussis (BX470248) BP0353; ferredoxin complement(4512544..4512849) Bordetella parapertussis 12822 1668055 NP_886312.1 CDS BPP4180 NC_002928.3 4512868 4513167 R ortholog of Bordetella pertussis (BX470248) BP0352; hypothetical protein complement(4512868..4513167) Bordetella parapertussis 12822 1668056 NP_886313.1 CDS BPP4181 NC_002928.3 4513169 4513486 R ortholog of Bordetella pertussis (BX470248) BP0351; ferredoxin complement(4513169..4513486) Bordetella parapertussis 12822 1668057 NP_886314.1 CDS BPP4182 NC_002928.3 4513800 4513991 D ortholog of Bordetella pertussis (BX470248) BP0350; hypothetical protein 4513800..4513991 Bordetella parapertussis 12822 1668058 NP_886315.1 CDS hurI NC_002928.3 4514165 4514674 D ortholog of Bordetella pertussis (BX470248) BP0349; heme uptake regulator 4514165..4514674 Bordetella parapertussis 12822 1668059 NP_886316.1 CDS bhuR NC_002928.3 4515678 4518290 D ortholog of Bordetella pertussis (BX470248) BP0347; outer membrane heme receptor 4515678..4518290 Bordetella parapertussis 12822 1668061 NP_886317.1 CDS bhuS NC_002928.3 4518348 4519394 D ortholog of Bordetella pertussis (BX470248) BP0346; hemin transport protein 4518348..4519394 Bordetella parapertussis 12822 1668062 NP_886318.1 CDS bhuT NC_002928.3 4519391 4520254 D ortholog of Bordetella pertussis (BX470248) BP0345; hemin binding protein 4519391..4520254 Bordetella parapertussis 12822 1668063 NP_886319.1 CDS bhuU NC_002928.3 4520298 4521242 D ortholog of Bordetella pertussis (BX470248) BP0344; hemin permease 4520298..4521242 Bordetella parapertussis 12822 1668064 NP_886320.1 CDS hmuV NC_002928.3 4521257 4522045 D with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 4521257..4522045 Bordetella parapertussis 12822 1668065 NP_886321.1 CDS BPP4190 NC_002928.3 4522049 4522549 R ortholog of Bordetella pertussis (BX470248) BP0342; hypothetical protein complement(4522049..4522549) Bordetella parapertussis 12822 1668066 NP_886322.1 CDS BPP4191 NC_002928.3 4522694 4523419 D ortholog of Bordetella pertussis (BX470248) BP0341; hypothetical protein 4522694..4523419 Bordetella parapertussis 12822 1668067 NP_886323.1 CDS alkB NC_002928.3 4523431 4524081 D ortholog of Bordetella pertussis (BX470248) BP0340; alkylated DNA repair protein 4523431..4524081 Bordetella parapertussis 12822 1668068 NP_886324.1 CDS ogt NC_002928.3 4524102 4524689 D ortholog of Bordetella pertussis (BX470248) BP0339; methylated-DNA--protein-cysteine methyltransferase 4524102..4524689 Bordetella parapertussis 12822 1665823 NP_886325.1 CDS BPP4194 NC_002928.3 4524784 4525926 D ortholog of Bordetella pertussis (BX470248) BP0338; hypothetical protein 4524784..4525926 Bordetella parapertussis 12822 1665824 NP_886326.1 CDS BPP4195 NC_002928.3 4525936 4526766 R ortholog of Bordetella pertussis (BX470248) BP0337; hypothetical protein complement(4525936..4526766) Bordetella parapertussis 12822 1665825 NP_886327.1 CDS BPP4196 NC_002928.3 4526763 4528076 R ortholog of Bordetella pertussis (BX470248) BP0336; Poor database matches. Similar to internal regions of Salmonella typhi exported protein STY0180 SWALL:Q8Z9E7 (EMBL:AL627265) (540 aa) fasta scores: E(): 1.7e-24, 40.86% id in 438 aa, and to Escherichia coli hypothetical protein YacH SWALL:YACH_ECOLI (SWALL:P36682) (617 aa) fasta scores: E(): 3.4e-23, 38.34% id in 446 aa; hypothetical protein complement(4526763..4528076) Bordetella parapertussis 12822 1665826 NP_886328.1 CDS BPP4197 NC_002928.3 4528187 4529143 R ortholog of Bordetella pertussis (BX470248) BP0335; Similar to Escherichia coli tdc operon transcriptional activator TdcA SWALL:TDCA_ECOLI (SWALL:P11036) (312 aa) fasta scores: E(): 2.4e-08, 23.81% id in 273 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA2206 SWALL:Q9I1R1 (EMBL:AE004647) (315 aa) fasta scores: E(): 1.5e-16, 29.56% id in 318 aa; LysR family transcriptional regulator complement(4528187..4529143) Bordetella parapertussis 12822 1665827 NP_886329.1 CDS BPP4198 NC_002928.3 4529248 4530243 D ortholog of Bordetella pertussis (BX470248) BP0334; hypothetical protein 4529248..4530243 Bordetella parapertussis 12822 1665828 NP_886330.1 CDS BPP4199 NC_002928.3 4530256 4531140 D ortholog of Bordetella pertussis (BX470248) BP0333; metallo-beta-lactamase 4530256..4531140 Bordetella parapertussis 12822 1665829 NP_886331.1 CDS BPP4200 NC_002928.3 4531184 4532260 R Poor database matches. Similar to Pseudomonas aeruginosa hypothetical protein PA4347 SWALL:Q9HW54 (EMBL:AE004851) (384 aa) fasta scores: E(): 0.00047, 29.31% id in 307 aa, and to Rhizobium meliloti exported enzyme, similar to 6-aminohexanoate-dimer hydrolase SMB20965 SWALL:Q92UN4 (EMBL:AL603646) (332 aa) fasta scores: E(): 0.0066, 25.38% id in 327 aa; hypothetical protein complement(4531184..4532260) Bordetella parapertussis 12822 1665830 NP_886332.1 CDS BPP4201 NC_002928.3 4532269 4533465 R Similar to Hyphomicrobium methylovorum serine--glyoxylate aminotransferase SgaA SWALL:SGAA_HYPME (SWALL:O08374) (404 aa) fasta scores: E(): 1.1e-62, 45.71% id in 385 aa, and to Rhizobium loti probable serine-glyoxylate aminotransferase MLR1322 SWALL:Q98KU1 (EMBL:AP002997) (396 aa) fasta scores: E(): 1.1e-65, 46.83% id in 395 aa; serine--glyoxylate aminotransferase complement(4532269..4533465) Bordetella parapertussis 12822 1665831 NP_886333.1 CDS BPP4202 NC_002928.3 4533664 4534374 D Similar to Rhizobium meliloti transcriptional regulator, GntR family protein SMB20773 SWALL:Q92TP2 (EMBL:AL603647) (228 aa) fasta scores: E(): 3e-26, 45.68% id in 197 aa, and to Streptomyces coelicolor transcriptional regulator SCBAC17A6.31c SWALL:Q93J99 (EMBL:AL596248) (216 aa) fasta scores: E(): 1.6e-14, 38.99% id in 218 aa; GntR family transcriptional regulator 4533664..4534374 Bordetella parapertussis 12822 1665832 NP_886334.1 CDS BPP4203 NC_002928.3 4534407 4534952 R Poor database matches. Similar to Ralstonia solanacearum probable transmembrane protein RS03329 SWALL:Q8Y2H5 (EMBL:AL646058) (171 aa) fasta scores: E(): 0.00014, 30.11% id in 176 aa; hypothetical protein complement(4534407..4534952) Bordetella parapertussis 12822 1665833 NP_886335.1 CDS ctaD NC_002928.3 4534980 4536575 R cytochrome c oxidase polypeptide I complement(4534980..4536575) Bordetella parapertussis 12822 1665834 NP_886336.1 CDS BPP4205 NC_002928.3 4536941 4537909 D Similar to Pseudomonas sp. hypothetical protein SWALL:YTCB_PSESQ (SWALL:P27103) (336 aa) fasta scores: E(): 1.9e-42, 41.21% id in 313 aa, and to Comamonas acidovorans hypothetical protein SWALL:AAL86583 (EMBL:AY078159) (336 aa) fasta scores: E(): 2.1e-42, 41.21% id in 313 aa; lipoprotein 4536941..4537909 Bordetella parapertussis 12822 1665835 NP_886337.1 CDS BPP4206 NC_002928.3 4537925 4538869 R Similar to Pseudomonas putida transcriptional activator protein NahR SWALL:NAHR_PSEPU (SWALL:P10183) (300 aa) fasta scores: E(): 6.5e-32, 36.98% id in 292 aa, and to Pseudomonas aeruginosa probable transcriptional regulator PA3321 SWALL:Q9HYS4 (EMBL:AE004754) (304 aa) fasta scores: E(): 3e-36, 40.92% id in 303 aa; LysR family regulatory protein complement(4537925..4538869) Bordetella parapertussis 12822 1665836 NP_886338.1 CDS BPP4207 NC_002928.3 4539099 4539806 D Similar to Pseudomonas putida 2-haloalkanoic acid dehalogenase H-109 DehH109 SWALL:HAD2_PSEPU (SWALL:Q59728) (224 aa) fasta scores: E(): 7.9e-12, 26.63% id in 229 aa, and to Xanthobacter autotrophicus 2-haloalkanoic acid dehalogenase DhlB SWALL:HAD_XANAU (SWALL:Q60099) (253 aa) fasta scores: E(): 1.6e-14, 35.17% id in 199 aa; haloacid dehalogenase-like hydrolase 4539099..4539806 Bordetella parapertussis 12822 1666701 NP_886339.1 CDS BPP4208 NC_002928.3 4539809 4541017 D Similar to Rhizobium meliloti conserved membrane-anchored protein SMB21182 SWALL:Q92V66 (EMBL:AL603645) (394 aa) fasta scores: E(): 8.6e-67, 47.39% id in 384 aa, and to Thermoplasma volcanium L-carnitine dehydratase TV1186 or TVG1215416 SWALL:Q979H5 (EMBL:AP000995) (399 aa) fasta scores: E(): 3e-61, 41.08% id in 387 aa; CaiB/BaiF family protein 4539809..4541017 Bordetella parapertussis 12822 1666702 NP_886340.1 CDS BPP4209 NC_002928.3 4541030 4541485 D Weakly similar to Caulobacter crescentus hypothetical protein CC2103 SWALL:Q9A6J1 (EMBL:AE005883) (157 aa) fasta scores: E(): 2.6e-05, 28.98% id in 138 aa, and to Sulfolobus solfataricus hypothetical protein SSO2140 SWALL:P95914 (EMBL:Y08256) (140 aa) fasta scores: E(): 0.0018, 24.62% id in 134 aa; hypothetical protein 4541030..4541485 Bordetella parapertussis 12822 1666703 NP_886341.1 CDS BPP4210 NC_002928.3 4541496 4542470 R Similar to Rhizobium meliloti hypothetical protein SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.2e-34, 36.19% id in 315 aa, and to Agrobacterium tumefaciens hypothetical protein AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 3.2e-33, 35.96% id in 317 aa; hypothetical protein complement(4541496..4542470) Bordetella parapertussis 12822 1666704 NP_886342.1 CDS BPP4211 NC_002928.3 4542510 4544258 R No significant database matches to the full length CDS. C-terminus is similar to the N-terminal regions of Pseudomonas aeruginosa hypothetical protein PA2886 SWALL:Q9HZW1 (EMBL:AE004714) (600 aa) fasta scores: E(): 6.4e-39, 34.34% id in 460 aa, and Mycobacterium tuberculosis hypothetical protein Rv0976c SWALL:O86320 (EMBL:Z79700) (560 aa) fasta scores: E(): 2.5e-18, 33.81% id in 349 aa; hypothetical protein complement(4542510..4544258) Bordetella parapertussis 12822 1666705 NP_886343.1 CDS BPP4212 NC_002928.3 4544266 4545321 R Similar to Rhizobium meliloti hypothetical protein SMA1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 3e-44, 41.76% id in 328 aa, and to Agrobacterium tumefaciens hypothetical protein AGR_L_312 SWALL:AAL45521 (EMBL:AE009401) (329 aa) fasta scores: E(): 1.6e-38, 37.46% id in 331 aa. Possible alternative translational start site; hypothetical protein complement(4544266..4545321) Bordetella parapertussis 12822 1666706 NP_886344.1 CDS BPP4213 NC_002928.3 4545385 4546428 D Similar to Chromatium vinosum rubisco operon transcriptional regulator RbcR SWALL:RBCR_CHRVI (SWALL:P25544) (302 aa) fasta scores: E(): 5.6e-18, 31.33% id in 300 aa, and to Synechococcus sp. CbbR homologue CmpR SWALL:Q9F1R2 (EMBL:AB047379) (323 aa) fasta scores: E(): 5.8e-19, 29.04% id in 303 aa; LysR family regulatory protein 4545385..4546428 Bordetella parapertussis 12822 1666707 NP_886345.1 CDS glmS NC_002928.3 4546564 4548396 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(4546564..4548396) Bordetella parapertussis 12822 1666708 NP_886346.1 CDS BPP4215 NC_002928.3 4548546 4549034 D ortholog of Bordetella pertussis (BX470248) BP0667; transcription regulator AsnC 4548546..4549034 Bordetella parapertussis 12822 1666709 NP_886347.1 CDS BPP4216 NC_002928.3 4549056 4550273 R ortholog of Bordetella pertussis (BX470248) BP0668; thiolase complement(4549056..4550273) Bordetella parapertussis 12822 1667081 NP_886348.1 CDS BPP4217 NC_002928.3 4550270 4552387 R ortholog of Bordetella pertussis (BX470248) BP0669; bifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase complement(4550270..4552387) Bordetella parapertussis 12822 1667082 NP_886349.1 CDS BPP4219 NC_002928.3 4554530 4555516 D ortholog of Bordetella pertussis (BX470248) BP0671; hypothetical protein 4554530..4555516 Bordetella parapertussis 12822 1667084 NP_886350.1 CDS BPP4220 NC_002928.3 4555568 4557757 D ortholog of Bordetella pertussis (BX470248) BP0672; acetyl-CoA synthetase 4555568..4557757 Bordetella parapertussis 12822 1667085 NP_886351.1 CDS BPP4221 NC_002928.3 4557754 4558551 D Catalyzes the first step in the citric acid cycle. Oxaloacetate and acetyl-CoA bind to citrate synthase, which then catalyzes the reaction which joins the two compounds together; citrate synthase 4557754..4558551 Bordetella parapertussis 12822 1667086 NP_886352.1 CDS BPP4222 NC_002928.3 4558548 4559384 D ortholog of Bordetella pertussis (BX470248) BP0674; transcriptional regulator 4558548..4559384 Bordetella parapertussis 12822 1667087 NP_886353.1 CDS BPP4223 NC_002928.3 4559404 4561779 D ortholog of Bordetella pertussis (BX470248) BP0675; molybdopterin oxidoreductase 4559404..4561779 Bordetella parapertussis 12822 1667088 NP_886354.1 CDS BPP4224 NC_002928.3 4561776 4562657 R Similar to Rhizobium meliloti hypothetical transmembrane protein SMC00706 SWALL:Q92MF6 (EMBL:AL591791) (295 aa) fasta scores: E(): 1.6e-39, 45.74% id in 282 aa, and to Rhizobium loti hypothetical protein MLL3550 SWALL:Q98FZ9 (EMBL:AP003002) (304 aa) fasta scores: E(): 1e-38, 46.73% id in 276 aa; hypothetical protein complement(4561776..4562657) Bordetella parapertussis 12822 1667089 NP_886355.1 CDS BPP4226 NC_002928.3 4563486 4564547 R ortholog of Bordetella pertussis (BX470248) BP3727; glycosyl transferase family protein complement(4563486..4564547) Bordetella parapertussis 12822 1667091 NP_886356.1 CDS rkpK NC_002928.3 4564544 4565866 R ortholog of Bordetella pertussis (BX470248) BP3728; UDP-glucose 6-dehydrogenase complement(4564544..4565866) Bordetella parapertussis 12822 1664996 NP_886357.1 CDS BPP4228 NC_002928.3 4565978 4567363 R ortholog of Bordetella pertussis (BX470248) BP3729; hypothetical protein complement(4565978..4567363) Bordetella parapertussis 12822 1664997 NP_886358.1 CDS glmU NC_002928.3 4567360 4568733 R ortholog of Bordetella pertussis (BX470248) BP3730; UDP-N-acetylglucosamine synthesis bifunctional protein complement(4567360..4568733) Bordetella parapertussis 12822 1664998 NP_886359.1 CDS BPP4230 NC_002928.3 4568808 4569521 R ortholog of Bordetella pertussis (BX470248) BP3731; hypothetical protein complement(4568808..4569521) Bordetella parapertussis 12822 1664999 NP_886360.1 CDS BPP4231 NC_002928.3 4569737 4570381 R ortholog of Bordetella pertussis (BX470248) BP3732; hypothetical protein complement(4569737..4570381) Bordetella parapertussis 12822 1665000 NP_886361.1 CDS BPP4232 NC_002928.3 4570509 4570730 D ortholog of Bordetella pertussis (BX470248) BP3733; hypothetical protein 4570509..4570730 Bordetella parapertussis 12822 1665001 NP_886362.1 CDS BPP4233 NC_002928.3 4570902 4571504 R ortholog of Bordetella pertussis (BX470248) BP3734; SCO1/SenC family protein complement(4570902..4571504) Bordetella parapertussis 12822 1666436 NP_886363.1 CDS BPP4234 NC_002928.3 4571524 4572417 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(4571524..4572417) Bordetella parapertussis 12822 1666437 NP_886364.1 CDS BPP4235 NC_002928.3 4572428 4573459 R ortholog of Bordetella pertussis (BX470248) BP3736; cytochrome oxidase assembly protein complement(4572428..4573459) Bordetella parapertussis 12822 1666438 NP_886365.1 CDS BPP4236 NC_002928.3 4573462 4574082 R ortholog of Bordetella pertussis (BX470248) BP3737; hypothetical protein complement(4573462..4574082) Bordetella parapertussis 12822 1666439 NP_886366.1 CDS BPP4237 NC_002928.3 4574108 4574848 R ortholog of Bordetella pertussis (BX470248) BP3738; hypothetical protein complement(4574108..4574848) Bordetella parapertussis 12822 1666440 NP_886367.1 CDS BPP4238 NC_002928.3 4574915 4575115 D ortholog of Bordetella pertussis (BX470248) BP3739; hypothetical protein 4574915..4575115 Bordetella parapertussis 12822 1666441 NP_886368.1 CDS coIII NC_002928.3 4575225 4576100 R ortholog of Bordetella pertussis (BX470248) BP3740; cytochrome c oxidase subunit III complement(4575225..4576100) Bordetella parapertussis 12822 1666442 NP_886369.1 CDS BPP4240 NC_002928.3 4576163 4576387 R ortholog of Bordetella pertussis (BX470248) BP3741; hypothetical protein complement(4576163..4576387) Bordetella parapertussis 12822 1666443 NP_886370.1 CDS BPP4241 NC_002928.3 4576401 4576523 R ortholog of Bordetella pertussis (BX470248) BP3742; hypothetical protein complement(4576401..4576523) Bordetella parapertussis 12822 1666444 NP_886371.1 CDS ctaD NC_002928.3 4576558 4578165 R ortholog of Bordetella pertussis (BX470248) BP3743; cytochrome c oxidase polypeptide I complement(4576558..4578165) Bordetella parapertussis 12822 1666445 NP_886372.1 CDS BPP4243 NC_002928.3 4578276 4579454 R ortholog of Bordetella pertussis (BX470248) BP3744; bifunctional protein complement(4578276..4579454) Bordetella parapertussis 12822 1666446 NP_886373.1 CDS BPP4244 NC_002928.3 4579702 4580535 D ortholog of Bordetella pertussis (BX470248) BP3745; hypothetical protein 4579702..4580535 Bordetella parapertussis 12822 1667857 NP_886374.1 CDS BPP4245 NC_002928.3 4580725 4583268 R ortholog of Bordetella pertussis (BX470248) BP3746; sodium/hydrogen exchanger family protein complement(4580725..4583268) Bordetella parapertussis 12822 1667858 NP_886375.1 CDS BPP4246 NC_002928.3 4583380 4584258 D ortholog of Bordetella pertussis (BX470248) BP3747; hypothetical protein 4583380..4584258 Bordetella parapertussis 12822 1667859 NP_886376.1 CDS BPP4247 NC_002928.3 4584387 4585607 D transposase for IS1001 element; transposase 4584387..4585607 Bordetella parapertussis 12822 1667860 NP_886377.1 CDS rpoH NC_002928.3 4585967 4586890 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(4585967..4586890) Bordetella parapertussis 12822 1667861 NP_886378.1 CDS BPP4249 NC_002928.3 4586998 4587687 R ortholog of Bordetella pertussis (BX470248) BP3749; hypothetical protein complement(4586998..4587687) Bordetella parapertussis 12822 1668129 NP_886379.1 CDS BPP4250 NC_002928.3 4587748 4588596 R ortholog of Bordetella pertussis (BX470248) BP3750; esterase complement(4587748..4588596) Bordetella parapertussis 12822 1668130 NP_886380.1 CDS adhI NC_002928.3 4588598 4589704 R ortholog of Bordetella pertussis (BX470248) BP3751; alcohol dehydrogenase class III complement(4588598..4589704) Bordetella parapertussis 12822 1668131 NP_886381.1 CDS BPP4252 NC_002928.3 4589888 4590652 D ortholog of Bordetella pertussis (BX470248) BP3752; hypothetical protein 4589888..4590652 Bordetella parapertussis 12822 1668132 NP_886382.1 CDS gltB NC_002928.3 4590997 4595736 D ortholog of Bordetella pertussis (BX470248) BP3753; glutamate synthase 4590997..4595736 Bordetella parapertussis 12822 1668133 NP_886383.2 CDS gltD NC_002928.3 4595745 4597211 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase 4595745..4597211 Bordetella parapertussis 12822 1668134 NP_886384.1 CDS BPP4255 NC_002928.3 4597456 4598094 D ortholog of Bordetella pertussis (BX470248) BP3755; outer membrane protein 4597456..4598094 Bordetella parapertussis 12822 1668135 NP_886385.1 CDS BPP4256 NC_002928.3 4598176 4599159 D ortholog of Bordetella pertussis (BX470248) BP3756; hypothetical protein 4598176..4599159 Bordetella parapertussis 12822 1668136 NP_886386.1 CDS BPP4257 NC_002928.3 4599254 4600150 D ortholog of Bordetella pertussis (BX470248) BP3757; ABC transporter ATP-binding protein 4599254..4600150 Bordetella parapertussis 12822 1668137 NP_886387.1 CDS BPP4258 NC_002928.3 4600147 4600932 D ortholog of Bordetella pertussis (BX470248) BP3758; hypothetical protein 4600147..4600932 Bordetella parapertussis 12822 1668138 NP_886388.1 CDS BPP4259 NC_002928.3 4600945 4601451 D ortholog of Bordetella pertussis (BX470248) BP3759; mce related protein 4600945..4601451 Bordetella parapertussis 12822 1668139 NP_886389.1 CDS BPP4260 NC_002928.3 4601527 4602330 D ortholog of Bordetella pertussis (BX470248) BP3760; lipoprotein 4601527..4602330 Bordetella parapertussis 12822 1668140 NP_886390.1 CDS BPP4261 NC_002928.3 4602364 4602987 D ortholog of Bordetella pertussis (BX470248) BP3761; hypothetical protein 4602364..4602987 Bordetella parapertussis 12822 1668141 NP_886391.1 CDS BPP4262 NC_002928.3 4603053 4603904 D ortholog of Bordetella pertussis (BX470248) BP3762; ABC transporter ATP-binding protein 4603053..4603904 Bordetella parapertussis 12822 1667357 NP_886392.1 CDS BPP4263 NC_002928.3 4603901 4604716 D ortholog of Bordetella pertussis (BX470248) BP3764; ABC transporter protein 4603901..4604716 Bordetella parapertussis 12822 1667358 NP_886393.1 CDS BPP4264 NC_002928.3 4604716 4604967 D ortholog of Bordetella pertussis (BX470248) BP3765; BolA-like protein 4604716..4604967 Bordetella parapertussis 12822 1667359 NP_886394.1 CDS murA NC_002928.3 4604967 4606235 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 4604967..4606235 Bordetella parapertussis 12822 1667360 NP_886395.1 CDS hisG NC_002928.3 4606232 4606903 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 4606232..4606903 Bordetella parapertussis 12822 1667361 NP_886396.1 CDS hisD NC_002928.3 4606936 4608258 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 4606936..4608258 Bordetella parapertussis 12822 1667362 NP_886397.1 CDS hisC NC_002928.3 4608255 4609352 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 4608255..4609352 Bordetella parapertussis 12822 1667363 NP_886398.1 CDS hisB NC_002928.3 4609354 4609941 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 4609354..4609941 Bordetella parapertussis 12822 1667364 NP_886399.1 CDS hisH NC_002928.3 4609973 4610650 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 4609973..4610650 Bordetella parapertussis 12822 1667365 NP_886400.2 CDS hisA NC_002928.3 4610714 4611454 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 4610714..4611454 Bordetella parapertussis 12822 1667366 NP_886401.1 CDS hisF NC_002928.3 4611451 4612260 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 4611451..4612260 Bordetella parapertussis 12822 1667367 NP_886402.1 CDS hisI NC_002928.3 4612257 4612661 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 4612257..4612661 Bordetella parapertussis 12822 1665303 NP_886403.1 CDS hisE NC_002928.3 4612658 4613005 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 4612658..4613005 Bordetella parapertussis 12822 1665304 NP_886404.1 CDS BPP4275 NC_002928.3 4613020 4613388 D ortholog of Bordetella pertussis (BX470248) BP3776; MttA/Hcf106 family protein 4613020..4613388 Bordetella parapertussis 12822 1665305 NP_886405.1 CDS tatA NC_002928.3 4613404 4613631 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase A 4613404..4613631 Bordetella parapertussis 12822 1665306 NP_886406.1 CDS tatB NC_002928.3 4613704 4614159 D ortholog of Bordetella pertussis (BX470248) BP3778; Sec-independent protein translocase 4613704..4614159 Bordetella parapertussis 12822 1665307 NP_886407.1 CDS tatC NC_002928.3 4614156 4614956 D ortholog of Bordetella pertussis (BX470248) BP3779; Sec-independent protein translocase 4614156..4614956 Bordetella parapertussis 12822 1665308 NP_886408.1 CDS BPP4279 NC_002928.3 4615034 4615390 D Poor database matches. Similar to the N-terminal region of Pseudomonas aeruginosa transcription regulatory protein PrtR1 SWALL:PRTR_PSEAE (SWALL:Q06553) (256 aa) fasta scores: E(): 0.96, 39.36% id in 94 aa; DNA-binding protein 4615034..4615390 Bordetella parapertussis 12822 1665309 NP_886409.1 CDS degQ NC_002928.3 4615401 4616516 R ortholog of Bordetella pertussis (BX470248) BP0280; protease complement(4615401..4616516) Bordetella parapertussis 12822 1665310 NP_886410.1 CDS BPP4281 NC_002928.3 4616570 4617346 D ortholog of Bordetella pertussis (BX470248) BP0279; hypothetical protein 4616570..4617346 Bordetella parapertussis 12822 1665311 NP_886411.1 CDS mscL NC_002928.3 4617371 4617829 R homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(4617371..4617829) Bordetella parapertussis 12822 1665312 NP_886412.1 CDS petA NC_002928.3 4617969 4618610 D ortholog of Bordetella pertussis (BX470248) BP0277; ubiquinol-cytochrome C reductase iron-sulfur subunit 4617969..4618610 Bordetella parapertussis 12822 1665313 NP_886413.1 CDS petB NC_002928.3 4618675 4620057 D ortholog of Bordetella pertussis (BX470248) BP0276; cytochrome B 4618675..4620057 Bordetella parapertussis 12822 1667000 NP_886414.1 CDS petC NC_002928.3 4620077 4620931 D ortholog of Bordetella pertussis (BX470248) BP0275; cytochrome C1 precursor 4620077..4620931 Bordetella parapertussis 12822 1667001 NP_886415.1 CDS sspA NC_002928.3 4621090 4621701 D ortholog of Bordetella pertussis (BX470248) BP0274; stringent starvation protein A 4621090..4621701 Bordetella parapertussis 12822 1667002 NP_886416.1 CDS sspB NC_002928.3 4621711 4622160 D ortholog of Bordetella pertussis (BX470248) BP0273; ClpXP protease specificity-enhancing factor 4621711..4622160 Bordetella parapertussis 12822 1667003 NP_886417.1 CDS BPP4288 NC_002928.3 4622365 4622679 R Similar to Ralstonia solanacearum hypothetical protein Rsc0939 or Rs04472 SWALL:Q8Y0V4 (EMBL:AL646061) (104 aa) fasta scores: E(): 1.1e-10, 37.25% id in 102 aa and to Vibrio cholerae hypothetical protein Vc1724 SWALL:Q9KRB8 (EMBL:AE004250) (103 aa) fasta scores: E(): 1.8e-09, 35.92% id in 103 aa; hypothetical protein complement(4622365..4622679) Bordetella parapertussis 12822 1667004 NP_886418.1 CDS BPP4289 NC_002928.3 4622735 4623718 R Similar to several including: Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 1.7e-38, 37.82% id in 312 aa and to Comamonas testosteroni OrfJ SWALL:Q9RHM9 (EMBL:AB029044) (326 aa) fasta scores: E(): 5.4e-35, 36.66% id in 330 aa; hypothetical protein complement(4622735..4623718) Bordetella parapertussis 12822 1667005 NP_886419.1 CDS BPP4290 NC_002928.3 4623755 4624705 R Similar to Xylella fastidiosa hypothetical protein Xf1745 SWALL:Q9PCN3 (EMBL:AE003997) (338 aa) fasta scores: E(): 1.3e-16, 29.28% id in 280 aa, and to Ralstonia solanacearum hypothetical signal peptide protein Rsc0206 or Rs00638 SWALL:Q8Y2X5 (EMBL:AL646058) (342 aa) fasta scores: E(): 1.1e-14, 28.16% id in 284 aa; hypothetical protein complement(4623755..4624705) Bordetella parapertussis 12822 1667006 NP_886420.1 CDS BPP4291 NC_002928.3 4624724 4625605 R Similar to seveal hydrolases including: Yersinia pestis Ypo1933 SWALL:Q9ZC43 (EMBL:AL031866) (289 aa) fasta scores: E(): 4.1e-45, 47.68% id in 281 aa and to Pseudomonas paucimobilis 2-pyrone-4,6-dicarboxylic acid hydrolase LigI SWALL:O87170 (EMBL:AB015964) (293 aa) fasta scores: E(): 2e-24, 35.35% id in 280 aa; hydrolase complement(4624724..4625605) Bordetella parapertussis 12822 1667007 NP_886421.1 CDS BPP4292 NC_002928.3 4625694 4626617 D Similar to many transcriptional regulators including: Rhizobium loti nitrogen assimilation control protein Mlr6097 SWALL:Q98A96 (EMBL:AP003008) (316 aa) fasta scores: E(): 5e-27, 37.13% id in 307 aa and to Escherichia coli nitrogen assimilation regulatory protein Nac or b1988 SWALL:NAC_ECOLI (SWALL:Q47005) (305 aa) fasta scores: E(): 1.2e-22, 31.41% id in 296 aa; LysR family transcriptional regulator 4625694..4626617 Bordetella parapertussis 12822 1667008 NP_886422.1 CDS trxB NC_002928.3 4626623 4627576 R Similar to Vibrio cholerae thioredoxin reductase TrxB or Vc1182 SWALL:TRXB_VIBCH (SWALL:Q9KSS4) (318 aa) fasta scores: E(): 5.6e-78, 64.96% id in 314 aa and to Ralstonia solanacearum probable thioredoxin reductase oxidoreductase TrxB SWALL:Q8XWX8 (EMBL:AL646069) (318 aa) fasta scores: E(): 7.5e-82, 69.96% id in 313 aa; thioredoxin reductase complement(4626623..4627576) Bordetella parapertussis 12822 1667009 NP_886423.1 CDS BPP4294 NC_002928.3 4627887 4628696 D Similar to several proposed transcriptional regulators including: Bordetella pertussis hypothetical 29.0 kDa protein SWALL:O30445 (EMBL:AF006000) (260 aa) fasta scores: E(): 9.4e-35, 44.92% id in 256 aa and to Brucella abortus transcriptional Batn1953 SWALL:Q8VQJ7 (EMBL:AF454951) (272 aa) fasta scores: E(): 2.2e-20, 35.47% id in 234 aa; IclR family transcriptional regulator 4627887..4628696 Bordetella parapertussis 12822 1667010 NP_886424.1 CDS BPP4295 NC_002928.3 4628764 4630446 D Similar to Pseudomonas aeruginosa probable thiosulfate sulfurtransferase Pa2603 SWALL:Q9I0N4 (EMBL:AE004689) (527 aa) fasta scores: E(): 4.8e-41, 37.87% id in 536 aa and to Agrobacterium tumefaciens hypothetical protein Atu6089 SWALL:AAL46325 (EMBL:AE009427) (395 aa) fasta scores: E(): 2.2e-27, 37.26% id in 314 aa; hypothetical protein 4628764..4630446 Bordetella parapertussis 12822 1667011 NP_886425.1 CDS BPP4296 NC_002928.3 4630443 4631087 D no significant database hits; hypothetical protein 4630443..4631087 Bordetella parapertussis 12822 1667012 NP_886426.1 CDS BPP4297 NC_002928.3 4631084 4632304 D Similar to Brucella melitensis alpha-methylacyl-CoA racemase Bmeii1019 SWALL:Q8YB81 (EMBL:AE009734) (415 aa) fasta scores: E(): 3.3e-55, 40.74% id in 405 aa and to Agrobacterium tumefaciens L-carnitine dehydratase Caib SWALL:AAL43117 (EMBL:AE009163) (397 aa) fasta scores: E(): 5e-53, 42.56% id in 390 aa; dehydratase/racemase 4631084..4632304 Bordetella parapertussis 12822 1667013 NP_886427.1 CDS BPP4298 NC_002928.3 4632327 4633322 D Similar to Rhizobium meliloti hypothetical protein Ra1058 or Sma1927 SWALL:Q92Y30 (EMBL:AE007292) (330 aa) fasta scores: E(): 2.9e-43, 37.34% id in 324 aa and to Pseudomonas chlororaphis hypothetical 35.8 kDa protein SWALL:Q9L3W5 (EMBL:AJ271325) (336 aa) fasta scores: E(): 1.4e-38, 36.06% id in 305 aa; lipoprotein 4632327..4633322 Bordetella parapertussis 12822 1667014 NP_886428.1 CDS BPP4299 NC_002928.3 4633395 4634600 R Similar to many including: Rhodococcus spAD45 racemase IsoG SWALL:Q9RBP6 (EMBL:AJ249207) (405 aa) fasta scores: E(): 2.6e-46, 35.12% id in 410 aa and to Streptomyces coelicolor dehydratase Sce66.09 SWALL:Q9K3T4 (EMBL:AL359989) (391 aa) fasta scores: E(): 2.4e-39, 35.26% id in 397 aa; dehydratase/racemase complement(4633395..4634600) Bordetella parapertussis 12822 1665666 NP_886429.1 CDS BPP4300 NC_002928.3 4634597 4634845 R Similar to Mycobacterium leprae glutaredoxin electron transport component of NrdEF SWALL:Q9CBP8 (EMBL:AL583923) (80 aa) fasta scores: E(): 0.00036, 32% id in 75 aa and to Corynebacterium ammoniagenes NrdH-redoxin SWALL:O69271 (EMBL:Y09572) (75 aa) fasta scores: E(): 0.0004, 33.33% id in 72 aa; glutaredoxin complement(4634597..4634845) Bordetella parapertussis 12822 1665667 NP_886430.1 CDS BPP4301 NC_002928.3 4634842 4635759 R Similar to Clostridium sticklandii proline reductase PrdB SWALL:Q9Z4Q7 (EMBL:AJ130879) (242 aa) fasta scores: E(): 2.9e-11, 26.44% id in 208 aa; reductase complement(4634842..4635759) Bordetella parapertussis 12822 1665668 NP_886431.1 CDS BPP4303 NC_002928.3 4636118 4636993 D ortholog of Bordetella pertussis (BX470248) BP3782; hypothetical protein 4636118..4636993 Bordetella parapertussis 12822 1665669 NP_886432.1 CDS ptxA NC_002928.3 4637270 4638079 D ortholog of Bordetella pertussis (BX470248) BP3783; toxin subunit 1 4637270..4638079 Bordetella parapertussis 12822 1665670 NP_886433.1 CDS ptxD NC_002928.3 4638793 4639251 D ortholog of Bordetella pertussis (BX470248) BP3785; toxin subunit 4 4638793..4639251 Bordetella parapertussis 12822 1665672 NP_886434.1 CDS ptxE NC_002928.3 4639263 4639625 D ortholog of Bordetella pertussis (BX470248) BP3786; toxin subunit 5 4639263..4639625 Bordetella parapertussis 12822 1665673 NP_886435.1 CDS ptxC NC_002928.3 4639708 4640391 D ortholog of Bordetella pertussis (BX470248) BP3787; toxin subunit 3 4639708..4640391 Bordetella parapertussis 12822 1665674 NP_886436.1 CDS ptlA NC_002928.3 4640447 4640755 D ortholog of Bordetella pertussis (BX470248) BP3788; toxin transport protein 4640447..4640755 Bordetella parapertussis 12822 1665675 NP_886437.1 CDS ptlB NC_002928.3 4640774 4641088 D ortholog of Bordetella pertussis (BX470248) BP3789; toxin transport protein 4640774..4641088 Bordetella parapertussis 12822 1665676 NP_886438.1 CDS BPP4311 NC_002928.3 4641085 4643559 D ortholog of Bordetella pertussis (BX470248) BP3790; secretion system protein 4641085..4643559 Bordetella parapertussis 12822 1666311 NP_886439.1 CDS BPP4312 NC_002928.3 4643567 4644958 D ortholog of Bordetella pertussis (BX470248) BP3791; hypothetical protein 4643567..4644958 Bordetella parapertussis 12822 1666312 NP_886440.1 CDS BPP4312A NC_002928.3 4644955 4645140 D ortholog of Bordetella pertussis (BX470248) BP3792; secretion system protein 4644955..4645140 Bordetella parapertussis 12822 1666313 NP_886441.1 CDS BPP4313 NC_002928.3 4645119 4645820 D ortholog of Bordetella pertussis (BX470248) BP3793; secretion system protein 4645119..4645820 Bordetella parapertussis 12822 1666314 NP_886442.1 CDS BPP4314 NC_002928.3 4645817 4646638 D ortholog of Bordetella pertussis (BX470248) BP3794; secretion system protein 4645817..4646638 Bordetella parapertussis 12822 1666315 NP_886443.1 CDS BPP4315 NC_002928.3 4646619 4647743 D ortholog of Bordetella pertussis (BX470248) BP3795; secretion system protein 4646619..4647743 Bordetella parapertussis 12822 1666316 NP_886444.1 CDS BPP4316 NC_002928.3 4647736 4648755 D ortholog of Bordetella pertussis (BX470248) BP3796; secretion system protein 4647736..4648755 Bordetella parapertussis 12822 1666317 NP_886445.1 CDS BPP4317 NC_002928.3 4648961 4649995 R ortholog of Bordetella pertussis (BX470248) BP3797; hypothetical protein complement(4648961..4649995) Bordetella parapertussis 12822 1666318 NP_886446.1 CDS BPP4318 NC_002928.3 4650096 4650887 D ortholog of Bordetella pertussis (BX470248) BP3798; AraC family transcription regulator 4650096..4650887 Bordetella parapertussis 12822 1666319 NP_886447.1 CDS BPP4319 NC_002928.3 4650970 4651344 D ortholog of Bordetella pertussis (BX470248) BP3799; hypothetical protein 4650970..4651344 Bordetella parapertussis 12822 1666320 NP_886448.1 CDS BPP4320 NC_002928.3 4651322 4652731 D ortholog of Bordetella pertussis (BX470248) BP3800; hypothetical protein 4651322..4652731 Bordetella parapertussis 12822 1666321 NP_886449.1 CDS BPP4321 NC_002928.3 4652724 4654106 D ortholog of Bordetella pertussis (BX470248) BP3801; hypothetical protein 4652724..4654106 Bordetella parapertussis 12822 1666322 NP_886450.1 CDS BPP4322 NC_002928.3 4654285 4656045 D ortholog of Bordetella pertussis (BX470248) BP3802; extracellular solute-binding protein 4654285..4656045 Bordetella parapertussis 12822 1667552 NP_886451.1 CDS BPP4323 NC_002928.3 4656081 4657094 D ortholog of Bordetella pertussis (BX470248) BP3803; transport system permease 4656081..4657094 Bordetella parapertussis 12822 1667553 NP_886452.1 CDS BPP4324 NC_002928.3 4657105 4658031 D ortholog of Bordetella pertussis (BX470248) BP3804; transport system permease 4657105..4658031 Bordetella parapertussis 12822 1667554 NP_886453.1 CDS BPP4325 NC_002928.3 4658039 4659760 D ortholog of Bordetella pertussis (BX470248) BP3805+BP0167; ABC transporter ATP-binding protein 4658039..4659760 Bordetella parapertussis 12822 1667555 NP_886454.1 CDS BPP4326 NC_002928.3 4659767 4660585 R ortholog of Bordetella pertussis (BX470248) BP0168; hypothetical protein complement(4659767..4660585) Bordetella parapertussis 12822 1667556 NP_886455.1 CDS BPP4327 NC_002928.3 4660671 4661300 R ortholog of Bordetella pertussis (BX470248) BP0169; hypothetical protein complement(4660671..4661300) Bordetella parapertussis 12822 1667557 NP_886456.1 CDS rhlE NC_002928.3 4661631 4663076 D ortholog of Bordetella pertussis (BX470248) BP0170; ATP-dependent RNA helicase 4661631..4663076 Bordetella parapertussis 12822 1667558 NP_886457.1 CDS BPP4329 NC_002928.3 4663110 4663739 D ortholog of Bordetella pertussis (BX470248) BP0171; LysE family efflux protein 4663110..4663739 Bordetella parapertussis 12822 1667559 NP_886458.1 CDS prfC NC_002928.3 4663788 4665395 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4663788..4665395 Bordetella parapertussis 12822 1666962 NP_886459.1 CDS BPP4331 NC_002928.3 4665420 4666103 D ortholog of Bordetella pertussis (BX470248) BP0173; hypothetical protein 4665420..4666103 Bordetella parapertussis 12822 1666963 NP_886460.1 CDS bfr NC_002928.3 4666185 4666661 R ortholog of Bordetella pertussis (BX470248) BP0174; bacterioferritin complement(4666185..4666661) Bordetella parapertussis 12822 1666964 NP_886461.1 CDS BPP4333 NC_002928.3 4667000 4667929 R ortholog of Bordetella pertussis (BX470248) BP0136; integral membrane protein complement(4667000..4667929) Bordetella parapertussis 12822 1666965 NP_886462.1 CDS BPP4334 NC_002928.3 4668037 4668915 D ortholog of Bordetella pertussis (BX470248) BP0135; LysR family transcriptional regulator 4668037..4668915 Bordetella parapertussis 12822 1666966 NP_886463.1 CDS BPP4335 NC_002928.3 4668943 4669245 R ortholog of Bordetella pertussis (BX470248) BP0134; bacterioferritin-associated ferredoxin complement(4668943..4669245) Bordetella parapertussis 12822 1666967 NP_886464.1 CDS rpoN NC_002928.3 4669338 4670777 R ortholog of Bordetella pertussis (BX470248) BP0133; RNA polymerase sigma-54 factor complement(4669338..4670777) Bordetella parapertussis 12822 1666968 NP_886465.1 CDS BPP4337 NC_002928.3 4670776 4671423 D ortholog of Bordetella pertussis (BX470248) BP0132; hypothetical protein 4670776..4671423 Bordetella parapertussis 12822 1666969 NP_886466.1 CDS leuA NC_002928.3 4671850 4673556 D ortholog of Bordetella pertussis (BX470248) BP0131; 2-isopropylmalate synthase 4671850..4673556 Bordetella parapertussis 12822 1666970 NP_886467.1 CDS BPP4339 NC_002928.3 4673697 4674962 R ortholog of Bordetella pertussis (BX470248) BP0130; amidase complement(4673697..4674962) Bordetella parapertussis 12822 1666971 NP_886468.1 CDS BPP4340 NC_002928.3 4675218 4676255 D ortholog of Bordetella pertussis (BX470248) BP0129; LacI family transcriptional regulator 4675218..4676255 Bordetella parapertussis 12822 1665484 NP_886469.1 CDS BPP4341 NC_002928.3 4676252 4677262 D ortholog of Bordetella pertussis (BX470248) BP0128; periplasmic solute-binding protein 4676252..4677262 Bordetella parapertussis 12822 1665485 NP_886470.1 CDS BPP4342 NC_002928.3 4677264 4678079 D ortholog of Bordetella pertussis (BX470248) BP0127; binding-protein-dependent transport system, permease 4677264..4678079 Bordetella parapertussis 12822 1665486 NP_886471.1 CDS BPP4343 NC_002928.3 4678076 4678924 D ortholog of Bordetella pertussis (BX470248) BP0126; ABC transporter permease 4678076..4678924 Bordetella parapertussis 12822 1665487 NP_886472.1 CDS BPP4344 NC_002928.3 4678921 4679904 D ortholog of Bordetella pertussis (BX470248) BP0125; ABC transporter ATP-binding protein 4678921..4679904 Bordetella parapertussis 12822 1665488 NP_886473.1 CDS BPP4345 NC_002928.3 4679927 4680748 D ortholog of Bordetella pertussis (BX470248) BP0123; cAMP phosphodiesterase 4679927..4680748 Bordetella parapertussis 12822 1665489 NP_886474.1 CDS BPP4346 NC_002928.3 4680854 4681894 D ortholog of Bordetella pertussis (BX470248) BP0122; sugar ABC transporter ATP-binding protein 4680854..4681894 Bordetella parapertussis 12822 1665490 NP_886475.1 CDS BPP4347 NC_002928.3 4681937 4683229 D ortholog of Bordetella pertussis (BX470248) BP0121; extracellular solute-binding protein 4681937..4683229 Bordetella parapertussis 12822 1665491 NP_886476.1 CDS BPP4348 NC_002928.3 4683240 4684115 D ortholog of Bordetella pertussis (BX470248) BP0120; inner membrane component of binding-protein-dependent transport system 4683240..4684115 Bordetella parapertussis 12822 1665492 NP_886477.1 CDS BPP4349 NC_002928.3 4684112 4684912 D ortholog of Bordetella pertussis (BX470248) BP0119; inner membrane component of binding-protein-dependent transport system 4684112..4684912 Bordetella parapertussis 12822 1665493 NP_886478.1 CDS BPP4350 NC_002928.3 4685153 4685470 R ortholog of Bordetella pertussis (BX470248) BP0117; hypothetical protein complement(4685153..4685470) Bordetella parapertussis 12822 1665557 NP_886479.1 CDS BPP4351 NC_002928.3 4685561 4685908 R ortholog of Bordetella pertussis (BX470248) BP0116; hypothetical protein complement(4685561..4685908) Bordetella parapertussis 12822 1665558 NP_886480.1 CDS argS NC_002928.3 4686196 4687881 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 4686196..4687881 Bordetella parapertussis 12822 1665559 NP_886481.1 CDS BPP4353 NC_002928.3 4687942 4688574 D ortholog of Bordetella pertussis (BX470248) BP0114; hypothetical protein 4687942..4688574 Bordetella parapertussis 12822 1665560 NP_886482.1 CDS dsbA NC_002928.3 4688636 4689265 D ortholog of Bordetella pertussis (BX470248) BP0113; thiol:disulfide interchange protein DsbA precursor 4688636..4689265 Bordetella parapertussis 12822 1665561 NP_886483.1 CDS metC NC_002928.3 4689347 4690540 R ortholog of Bordetella pertussis (BX470248) BP0112; cystathionine beta-lyase complement(4689347..4690540) Bordetella parapertussis 12822 1665562 NP_886484.1 CDS BPP4356 NC_002928.3 4690714 4691340 D ortholog of Bordetella pertussis (BX470248) BP0111; hypothetical protein 4690714..4691340 Bordetella parapertussis 12822 1665563 NP_886485.1 CDS BPP4357 NC_002928.3 4691364 4692422 R ortholog of Bordetella pertussis (BX470248) BP0442; metallo-beta-lactamase complement(4691364..4692422) Bordetella parapertussis 12822 1665564 NP_886486.1 CDS BPP4358 NC_002928.3 4692497 4692871 D ortholog of Bordetella pertussis (BX470248) BP0441; MerR family transcriptional regulator 4692497..4692871 Bordetella parapertussis 12822 1665565 NP_886487.1 CDS ivd NC_002928.3 4693079 4694257 D ortholog of Bordetella pertussis (BX470248) BP0440 + BP0444; Similar to Homo sapiens isovaleryl-coa dehydrogenase, mitochondrial precursor ivD SWALL:IVD_HUMAN (SWALL:P26440) (423 aa) fasta scores: E(): 8.3e-93, 61.81% id in 385 aa; isovaleryl-CoA dehydrogenase 4693079..4694257 Bordetella parapertussis 12822 1665566 NP_886488.1 CDS aceK NC_002928.3 4694296 4696098 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase 4694296..4696098 Bordetella parapertussis 12822 1665567 NP_886489.1 CDS BPP4361 NC_002928.3 4696133 4697314 D ortholog of Bordetella pertussis (BX470248) BP0447; acetyl-CoA acetyltransferase 4696133..4697314 Bordetella parapertussis 12822 1666158 NP_886490.1 CDS accB NC_002928.3 4697415 4699022 D ortholog of Bordetella pertussis (BX470248) BP0448; carboxyltransferase subunit of acetyl-CoA carboxylase 4697415..4699022 Bordetella parapertussis 12822 1666159 NP_886491.1 CDS accA NC_002928.3 4699069 4701090 D ortholog of Bordetella pertussis (BX470248) BP0449; biotin carboxylase 4699069..4701090 Bordetella parapertussis 12822 1666160 NP_886492.1 CDS BPP4364 NC_002928.3 4701124 4701369 R ortholog of Bordetella pertussis (BX470248) BP0450; hypothetical protein complement(4701124..4701369) Bordetella parapertussis 12822 1666161 NP_886493.1 CDS argD NC_002928.3 4701383 4702573 R DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase complement(4701383..4702573) Bordetella parapertussis 12822 1666162 NP_886494.1 CDS BPP4366 NC_002928.3 4702706 4703734 D ortholog of Bordetella pertussis (BX470248) BP0452; hypothetical protein 4702706..4703734 Bordetella parapertussis 12822 1666163 NP_886495.1 CDS BPP4368 NC_002928.3 4705106 4706068 D ortholog of Bordetella pertussis (BX470248) BP0454; hypothetical protein 4705106..4706068 Bordetella parapertussis 12822 1666165 NP_886496.1 CDS BPP4369 NC_002928.3 4706183 4708216 D ortholog of Bordetella pertussis (BX470248) BP0455; hypothetical protein 4706183..4708216 Bordetella parapertussis 12822 1666166 NP_886497.1 CDS BPP4371 NC_002928.3 4710936 4711394 D ortholog of Bordetella pertussis (BX470248) BP0457; hypothetical protein 4710936..4711394 Bordetella parapertussis 12822 1666788 NP_886498.1 CDS BPP4372 NC_002928.3 4711411 4712370 D ortholog of Bordetella pertussis (BX470248) BP0458; aminoacyl-tRNA synthetase 4711411..4712370 Bordetella parapertussis 12822 1666789 NP_886499.1 CDS BPP4373 NC_002928.3 4712357 4715041 R ortholog of Bordetella pertussis (BX470248) BP0459; hypothetical protein complement(4712357..4715041) Bordetella parapertussis 12822 1666790 NP_886500.1 CDS topB NC_002928.3 4715042 4717669 D decatenates replicating daughter chromosomes; DNA topoisomerase III 4715042..4717669 Bordetella parapertussis 12822 1666791 NP_886501.1 CDS BPP4375 NC_002928.3 4717821 4718885 D ortholog of Bordetella pertussis (BX470248) BP0461; hypothetical protein 4717821..4718885 Bordetella parapertussis 12822 1666792 NP_886502.1 CDS BPP4376 NC_002928.3 4718882 4719655 D ortholog of Bordetella pertussis (BX470248) BP0462; ABC-transporter, ATP-binding component 4718882..4719655 Bordetella parapertussis 12822 1666793 NP_886503.1 CDS BPP4377 NC_002928.3 4719664 4720521 D ortholog of Bordetella pertussis (BX470248) BP0463; ABC transporter permease 4719664..4720521 Bordetella parapertussis 12822 1666794 NP_886504.1 CDS idnO NC_002928.3 4720534 4721313 D Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 4720534..4721313 Bordetella parapertussis 12822 1666795 NP_886505.1 CDS BPP4379 NC_002928.3 4721348 4722820 D ortholog of Bordetella pertussis (BX470248) BP0465; aldehyde dehydrogenase 4721348..4722820 Bordetella parapertussis 12822 1666796 NP_886506.1 CDS fabG NC_002928.3 4722848 4723606 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 4722848..4723606 Bordetella parapertussis 12822 1667139 NP_886507.1 CDS BPP4381 NC_002928.3 4723749 4725599 R ortholog of Bordetella pertussis (BX470248) BP0467; acetolactate synthase large subunit complement(4723749..4725599) Bordetella parapertussis 12822 1667140 NP_886508.1 CDS BPP4382 NC_002928.3 4725693 4726169 D ortholog of Bordetella pertussis (BX470248) BP0468; transcription regulator AsnC 4725693..4726169 Bordetella parapertussis 12822 1667141 NP_886509.1 CDS BPP4383 NC_002928.3 4726186 4727142 R ortholog of Bordetella pertussis (BX470248) BP0469; hypothetical protein complement(4726186..4727142) Bordetella parapertussis 12822 1667142 NP_886510.1 CDS BPP4384 NC_002928.3 4727204 4727713 D ortholog of Bordetella pertussis (BX470248) BP0470; hypothetical protein 4727204..4727713 Bordetella parapertussis 12822 1667143 NP_886511.1 CDS ribB NC_002928.3 4728087 4728779 D DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 4728087..4728779 Bordetella parapertussis 12822 1667144 NP_886512.1 CDS BPP4386 NC_002928.3 4728793 4729308 R ortholog of Bordetella pertussis (BX470248) BP0472; Similar to several proteins of unknown function including: Pseudomonas aeruginosa hypothetical protein Pa0145 SWALL:Q9I6Y7 (EMBL:AE004452) (172 aa) fasta scores: E(): 1.3e-30, 56.54% id in 168 aa, and to Ralstonia solanacearum hypothetical protein Rsc0745 SWALL:Q8Y1E5 (EMBL:AL646060) (161 aa) fasta scores: E(): 1.4e-30, 56.7% id in 164 aa; hypothetical protein complement(4728793..4729308) Bordetella parapertussis 12822 1667145 NP_886513.1 CDS BPP4387 NC_002928.3 4729366 4729890 R Similar to several proteins of unknown function e.g. Agrobacterium tumefaciens hypothetical protein Atu1998 SWALL:AAL42991 (EMBL:AE009151) (158 aa) fasta scores: E(): 3.1e-18, 41.83% id in 153 aa; hypothetical protein complement(4729366..4729890) Bordetella parapertussis 12822 1667146 NP_886514.1 CDS BPP4388 NC_002928.3 4729907 4730518 R Similar to several proteins of undefined function including: Agrobacterium tumefaciens hypothetical protein Atu1999 SWALL:AAL42992 (EMBL:AE009151) (203 aa) fasta scores: E(): 4.3e-38, 55.94% id in 202 aa and to Ralstonia solanacearum hypothetical protein Rsp0525 SWALL:Q8XSF1 (EMBL:AL646079) (203 aa) fasta scores: E(): 4.4e-43, 62.56% id in 203 aa; hypothetical protein complement(4729907..4730518) Bordetella parapertussis 12822 1667147 NP_886515.1 CDS BPP4389 NC_002928.3 4730632 4731561 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase complement(4730632..4731561) Bordetella parapertussis 12822 1667148 NP_886516.1 CDS BPP4390 NC_002928.3 4731608 4732549 R Similar to many DedA family membrane proteins including: Pseudomonas aeruginosa hypothetical protein Pa1209 SWALL:Q9I4C9 (EMBL:AE004551) (311 aa) fasta scores: E(): 6.7e-58, 55.55% id in 306 aa and to Ralstonia solanacearum probable transmembrane protein Rsp0396 SWALL:Q8XSS1 (EMBL:AL646078) (326 aa) fasta scores: E(): 4.9e-42, 40.86% id in 301 aa; integral-membrane protein complement(4731608..4732549) Bordetella parapertussis 12822 1667149 NP_886517.1 CDS BPP4391 NC_002928.3 4732673 4733110 R Similar to many proteins of undefined function including: Pseudomonas aeruginosa hypothetical protein Pa1428 SWALL:Q9I3R6 (EMBL:AE004572) (143 aa) fasta scores: E(): 5.7e-30, 58.04% id in 143 aa and to Salmonella typhimurium hypothetical acetyltransferase Yjab SWALL:YJAB_SALTY (SWALL:P40677) (145 aa) fasta scores: E(): 4.4e-19, 42.55% id in 141 aa; hypothetical protein complement(4732673..4733110) Bordetella parapertussis 12822 1665868 NP_886518.1 CDS BPP4392 NC_002928.3 4733131 4734930 R ortholog of Bordetella pertussis (BX470248) BP0482; hypothetical protein complement(4733131..4734930) Bordetella parapertussis 12822 1665869 NP_886519.1 CDS BPP4393 NC_002928.3 4734964 4735809 R ortholog of Bordetella pertussis (BX470248) BP0483; AraC family transcription regulator complement(4734964..4735809) Bordetella parapertussis 12822 1665870 NP_886520.1 CDS lldD NC_002928.3 4735897 4737060 R ortholog of Bordetella pertussis (BX470248) BP0484; L-lactate dehydrogenase complement(4735897..4737060) Bordetella parapertussis 12822 1665871 NP_886521.1 CDS BPP4395 NC_002928.3 4737215 4737499 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 4737215..4737499 Bordetella parapertussis 12822 1665872 NP_886522.1 CDS BPP4396 NC_002928.3 4737513 4738484 R ortholog of Bordetella pertussis (BX470248) BP0486; hypothetical protein complement(4737513..4738484) Bordetella parapertussis 12822 1665873 NP_886523.1 CDS BPP4397 NC_002928.3 4738523 4739704 R ortholog of Bordetella pertussis (BX470248) BP0487; amidase complement(4738523..4739704) Bordetella parapertussis 12822 1665874 NP_886524.1 CDS BPP4398 NC_002928.3 4739960 4740751 D ortholog of Bordetella pertussis (BX470248) BP0488; transcriptional regulator 4739960..4740751 Bordetella parapertussis 12822 1665875 NP_886525.1 CDS gyrB NC_002928.3 4740868 4743321 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(4740868..4743321) Bordetella parapertussis 12822 1665876 NP_886526.1 CDS dnaN NC_002928.3 4743416 4744531 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(4743416..4744531) Bordetella parapertussis 12822 1665877 NP_886527.1 CDS dnaA NC_002928.3 4744528 4745937 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(4744528..4745937) Bordetella parapertussis 12822 1665878 NP_886528.1 CDS rpmH NC_002928.3 4746343 4746477 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4746343..4746477 Bordetella parapertussis 12822 1666635 NP_886529.1 CDS rnpA NC_002928.3 4746573 4746944 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4746573..4746944 Bordetella parapertussis 12822 1666636 NP_886530.1 CDS BPP4404 NC_002928.3 4746941 4747213 D ortholog of Bordetella pertussis (BX470248) BP0494; hypothetical protein 4746941..4747213 Bordetella parapertussis 12822 1666637 NP_886531.2 CDS BPP4405 NC_002928.3 4747262 4748953 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 4747262..4748953 Bordetella parapertussis 12822 1666638 NP_886532.1 CDS katA NC_002928.3 4749209 4750657 D ortholog of Bordetella pertussis (BX470248) BP3852; catalase 4749209..4750657 Bordetella parapertussis 12822 1666639 NP_886533.1 CDS BPP4407 NC_002928.3 4750719 4751600 R ortholog of Bordetella pertussis (BX470248) BP3853; ABC transporter permease complement(4750719..4751600) Bordetella parapertussis 12822 1666640 NP_886534.1 CDS BPP4408 NC_002928.3 4751597 4752412 R ortholog of Bordetella pertussis (BX470248) BP3854; ABC transporter ATP-binding protein complement(4751597..4752412) Bordetella parapertussis 12822 1666641 NP_886535.1 CDS BPP4409 NC_002928.3 4752414 4753457 R ortholog of Bordetella pertussis (BX470248) BP3855; periplasmic protein complement(4752414..4753457) Bordetella parapertussis 12822 1666642 NP_886536.1 CDS BPP4410 NC_002928.3 4753501 4754424 R ortholog of Bordetella pertussis (BX470248) BP3856; taurine catabolism dioxygenase complement(4753501..4754424) Bordetella parapertussis 12822 1666643 NP_886537.1 CDS BPP4411 NC_002928.3 4754554 4755753 R ortholog of Bordetella pertussis (BX470248) BP3857; hydrolase complement(4754554..4755753) Bordetella parapertussis 12822 1666644 NP_886538.1 CDS BPP4412 NC_002928.3 4755811 4756827 R ortholog of Bordetella pertussis (BX470248) BP3858; transport ATP-binding protein complement(4755811..4756827) Bordetella parapertussis 12822 1666645 NP_886539.1 CDS BPP4413 NC_002928.3 4756824 4757825 R ortholog of Bordetella pertussis (BX470248) BP3859; transport system ATP-binding protein complement(4756824..4757825) Bordetella parapertussis 12822 1666366 NP_886540.1 CDS BPP4414 NC_002928.3 4757852 4758772 R ortholog of Bordetella pertussis (BX470248) BP3860; transport system permease complement(4757852..4758772) Bordetella parapertussis 12822 1666367 NP_886541.1 CDS BPP4415 NC_002928.3 4758769 4759743 R ortholog of Bordetella pertussis (BX470248) BP3861; transport system permease complement(4758769..4759743) Bordetella parapertussis 12822 1666368 NP_886542.1 CDS BPP4416 NC_002928.3 4759763 4761349 R ortholog of Bordetella pertussis (BX470248) BP3862; extracellular solute-binding protein complement(4759763..4761349) Bordetella parapertussis 12822 1666369 NP_886543.1 CDS trmE NC_002928.3 4761466 4762818 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4761466..4762818 Bordetella parapertussis 12822 1666370 NP_886544.1 CDS BPP4418 NC_002928.3 4762763 4764037 R ortholog of Bordetella pertussis (BX470248) BP3864; hypothetical protein complement(4762763..4764037) Bordetella parapertussis 12822 1666371 NP_886545.1 CDS BPP4419 NC_002928.3 4764595 4765275 D ortholog of Bordetella pertussis (BX470248) BP3865; response regulator protein 4764595..4765275 Bordetella parapertussis 12822 1666372 NP_886546.1 CDS BPP4420 NC_002928.3 4765262 4766725 D ortholog of Bordetella pertussis (BX470248) BP3866; sensor kinase 4765262..4766725 Bordetella parapertussis 12822 1666373 NP_886547.1 CDS BPP4421 NC_002928.3 4766846 4767850 D ortholog of Bordetella pertussis (BX470248) BP3867; hypothetical protein 4766846..4767850 Bordetella parapertussis 12822 1666374 NP_886548.1 CDS BPP4422 NC_002928.3 4767901 4768392 D ortholog of Bordetella pertussis (BX470248) BP3868; hypothetical protein 4767901..4768392 Bordetella parapertussis 12822 1666375 NP_886549.1 CDS BPP4423 NC_002928.3 4768389 4769912 D ortholog of Bordetella pertussis (BX470248) BP3869; hypothetical protein 4768389..4769912 Bordetella parapertussis 12822 1667181 NP_886550.1 CDS BPP4424 NC_002928.3 4769988 4771181 R catalyzes the transfer of an amino moiety; aminotransferase complement(4769988..4771181) Bordetella parapertussis 12822 1667182 NP_886551.1 CDS BPP4425 NC_002928.3 4771554 4771760 D ortholog of Bordetella pertussis (BX470248) BP3871; cold shock-like protein 4771554..4771760 Bordetella parapertussis 12822 1667183 BPPt01 tRNA BPPt01 NC_002928.3 6281 6367 D tRNA-Tyr 6281..6367 Bordetella parapertussis 12822 2760788 BPPt02 tRNA BPPt02 NC_002928.3 6556 6629 D tRNA-Gly 6556..6629 Bordetella parapertussis 12822 2760838 BPPt03 tRNA BPPt03 NC_002928.3 6636 6710 D tRNA-Thr 6636..6710 Bordetella parapertussis 12822 2760835 BPPt04 tRNA BPPt04 NC_002928.3 8068 8143 D tRNA-Trp 8068..8143 Bordetella parapertussis 12822 2760817 BPPt05 tRNA BPPt05 NC_002928.3 325800 325876 D tRNA-Pro 325800..325876 Bordetella parapertussis 12822 2760821 BPPt06 tRNA BPPt06 NC_002928.3 400377 400452 R tRNA-Phe complement(400377..400452) Bordetella parapertussis 12822 2760831 BPPt07 tRNA BPPt07 NC_002928.3 529388 529472 R tRNA-Leu complement(529388..529472) Bordetella parapertussis 12822 2760813 BPPt08 tRNA BPPt08 NC_002928.3 542793 542866 D tRNA-Gly 542793..542866 Bordetella parapertussis 12822 2760814 BPPt09 tRNA BPPt09 NC_002928.3 878842 878918 D tRNA-Gln 878842..878918 Bordetella parapertussis 12822 2760798 BPPt10 tRNA BPPt10 NC_002928.3 1197715 1197791 R tRNA-Asp complement(1197715..1197791) Bordetella parapertussis 12822 2760830 BPPt11 tRNA BPPt11 NC_002928.3 1197827 1197902 R tRNA-Glu complement(1197827..1197902) Bordetella parapertussis 12822 2760822 BPPt12 tRNA BPPt12 NC_002928.3 1197934 1198009 R tRNA-Ala complement(1197934..1198009) Bordetella parapertussis 12822 2760818 BPPt13 tRNA BPPt13 NC_002928.3 1212419 1212495 R tRNA-Asp complement(1212419..1212495) Bordetella parapertussis 12822 2760792 BPPt14 tRNA BPPt14 NC_002928.3 1212531 1212606 R tRNA-Glu complement(1212531..1212606) Bordetella parapertussis 12822 2760789 BPPt15 tRNA BPPt15 NC_002928.3 1212638 1212713 R tRNA-Ala complement(1212638..1212713) Bordetella parapertussis 12822 2760823 BPPt16 tRNA BPPt16 NC_002928.3 1293120 1293194 R tRNA-Arg complement(1293120..1293194) Bordetella parapertussis 12822 2760810 BPPt17 tRNA BPPt17 NC_002928.3 1520256 1520331 R tRNA-Ala complement(1520256..1520331) Bordetella parapertussis 12822 2760825 BPPt18 tRNA BPPt18 NC_002928.3 1842179 1842255 D tRNA-Ile 1842179..1842255 Bordetella parapertussis 12822 2760785 BPPt19 tRNA BPPt19 NC_002928.3 1842276 1842351 D tRNA-Ala 1842276..1842351 Bordetella parapertussis 12822 2760783 BPPt20 tRNA BPPt20 NC_002928.3 1975143 1975218 R tRNA-Thr complement(1975143..1975218) Bordetella parapertussis 12822 2760787 BPPt21 tRNA BPPt21 NC_002928.3 1975390 1975465 D tRNA-Asn 1975390..1975465 Bordetella parapertussis 12822 2760791 BPPt22 tRNA BPPt22 NC_002928.3 1979616 1979691 R tRNA-Met complement(1979616..1979691) Bordetella parapertussis 12822 2760811 BPPt23 tRNA BPPt23 NC_002928.3 2090948 2091024 D tRNA-Val 2090948..2091024 Bordetella parapertussis 12822 2760800 BPPt24 tRNA BPPt24 NC_002928.3 2137768 2137854 D tRNA-Leu 2137768..2137854 Bordetella parapertussis 12822 2760839 BPPt25 tRNA BPPt25 NC_002928.3 2225163 2225239 D tRNA-Pro 2225163..2225239 Bordetella parapertussis 12822 2760824 BPPt26 tRNA BPPt26 NC_002928.3 2316095 2316171 D tRNA-Arg 2316095..2316171 Bordetella parapertussis 12822 2760801 BPPt27 tRNA BPPt27 NC_002928.3 2396937 2397012 D tRNA-His 2396937..2397012 Bordetella parapertussis 12822 2760829 BPPt28 tRNA BPPt28 NC_002928.3 2435920 2436012 D tRNA-Ser 2435920..2436012 Bordetella parapertussis 12822 2760841 BPPt29 tRNA BPPt29 NC_002928.3 2450739 2450815 D tRNA-Arg 2450739..2450815 Bordetella parapertussis 12822 2760815 BPPt30 tRNA BPPt30 NC_002928.3 2465930 2466006 D tRNA-Arg 2465930..2466006 Bordetella parapertussis 12822 2760786 BPPt31 tRNA BPPt31 NC_002928.3 2583215 2583291 D tRNA-Ile 2583215..2583291 Bordetella parapertussis 12822 2760804 BPPt32 tRNA BPPt32 NC_002928.3 2583312 2583387 D tRNA-Ala 2583312..2583387 Bordetella parapertussis 12822 2760802 BPPt33 tRNA BPPt33 NC_002928.3 2711665 2711741 R tRNA-Met complement(2711665..2711741) Bordetella parapertussis 12822 2760827 BPPt34 tRNA BPPt34 NC_002928.3 2721225 2721309 R tRNA-Leu complement(2721225..2721309) Bordetella parapertussis 12822 2760806 BPPt35 tRNA BPPt35 NC_002928.3 2722170 2722254 R tRNA-Leu complement(2722170..2722254) Bordetella parapertussis 12822 2760820 BPPt36 tRNA BPPt36 NC_002928.3 2728633 2728708 D tRNA-Val 2728633..2728708 Bordetella parapertussis 12822 2760796 BPPt37 tRNA BPPt37 NC_002928.3 2803874 2803950 D tRNA-Pro 2803874..2803950 Bordetella parapertussis 12822 2760812 BPPt38 tRNA BPPt38 NC_002928.3 2811859 2811935 D tRNA-Met 2811859..2811935 Bordetella parapertussis 12822 2760790 BPPt39 tRNA BPPt39 NC_002928.3 3038083 3038161 R tRNA-Met complement(3038083..3038161) Bordetella parapertussis 12822 2760826 BPPt40 tRNA BPPt40 NC_002928.3 3699274 3699358 R tRNA-Leu complement(3699274..3699358) Bordetella parapertussis 12822 2760793 BPPt41 tRNA BPPt41 NC_002928.3 3702329 3702413 D tRNA-Leu 3702329..3702413 Bordetella parapertussis 12822 2760809 BPPt42 tRNA BPPt42 NC_002928.3 3719822 3719911 D tRNA-Ser 3719822..3719911 Bordetella parapertussis 12822 2760842 BPPt43 tRNA BPPt43 NC_002928.3 3781521 3781596 D tRNA-Gly 3781521..3781596 Bordetella parapertussis 12822 2760807 BPPt44 tRNA BPPt44 NC_002928.3 3819225 3819300 D tRNA-Gly 3819225..3819300 Bordetella parapertussis 12822 2760828 BPPt45 tRNA BPPt45 NC_002928.3 3819361 3819434 D tRNA-Cys 3819361..3819434 Bordetella parapertussis 12822 2760840 BPPt46 tRNA BPPt46 NC_002928.3 4003616 4003691 R tRNA-Lys complement(4003616..4003691) Bordetella parapertussis 12822 2760799 BPPt47 tRNA BPPt47 NC_002928.3 4022808 4022883 R tRNA-Lys complement(4022808..4022883) Bordetella parapertussis 12822 2760834 BPPt48 tRNA BPPt48 NC_002928.3 4077812 4077887 R tRNA-Ala complement(4077812..4077887) Bordetella parapertussis 12822 2760833 BPPt49 tRNA BPPt49 NC_002928.3 4077908 4077984 R tRNA-Ile complement(4077908..4077984) Bordetella parapertussis 12822 2760816 BPPt50 tRNA BPPt50 NC_002928.3 4147598 4147672 R tRNA-Val complement(4147598..4147672) Bordetella parapertussis 12822 2760780 BPPt51 tRNA BPPt51 NC_002928.3 4180156 4180246 R tRNA-Ser complement(4180156..4180246) Bordetella parapertussis 12822 2760819 BPPt52 tRNA BPPt52 NC_002928.3 4443687 4443761 R tRNA-Arg complement(4443687..4443761) Bordetella parapertussis 12822 2760837 BPPt53 tRNA BPPt53 NC_002928.3 4622238 4622313 D tRNA-Thr 4622238..4622313 Bordetella parapertussis 12822 2760805 BPPt54 tRNA BPPt54 NC_002928.3 4648812 4648887 D tRNA-Asn 4648812..4648887 Bordetella parapertussis 12822 2760795 BPPr01 rRNA BPPr01 NC_002928.3 1840550 1842081 D 16S ribosomal RNA 1840550..1842081 Bordetella parapertussis 12822 2760784 BPPr02 rRNA BPPr02 NC_002928.3 1842674 1845555 D 23S ribosomal RNA 1842674..1845555 Bordetella parapertussis 12822 2760782 BPPr03 rRNA BPPr03 NC_002928.3 1845730 1845844 D 5S ribosomal RNA 1845730..1845844 Bordetella parapertussis 12822 2760781 BPPr04 rRNA BPPr04 NC_002928.3 2581586 2583117 D 16S ribosomal RNA 2581586..2583117 Bordetella parapertussis 12822 2760808 BPPr05 rRNA BPPr05 NC_002928.3 2583710 2586591 D 23S ribosomal RNA 2583710..2586591 Bordetella parapertussis 12822 2760797 BPPr06 rRNA BPPr06 NC_002928.3 2586766 2586880 D 5S ribosomal RNA 2586766..2586880 Bordetella parapertussis 12822 2760794 BPPr07 rRNA BPPr07 NC_002928.3 4074319 4074433 R 5S ribosomal RNA complement(4074319..4074433) Bordetella parapertussis 12822 2760803 BPPr08 rRNA BPPr08 NC_002928.3 4074608 4077489 R 23S ribosomal RNA complement(4074608..4077489) Bordetella parapertussis 12822 2760832 BPPr09 rRNA BPPr09 NC_002928.3 4078082 4079613 R 16S ribosomal RNA complement(4078082..4079613) Bordetella parapertussis 12822 2760843