-- dump date   	20140619_004633
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_002221598.1	Probable lipoprotein (SpLip)
YP_002221599.1	Probable lipoprotein (SpLip)
YP_002221600.1	Probable lipoprotein (SpLip)
YP_002221601.1	flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor
YP_002221602.1	Probable lipoprotein (SpLip)
YP_002221603.1	Probable lipoprotein (SpLip)
YP_002221604.1	Probable lipoprotein (SpLip)
YP_002221605.1	Probable lipoprotein (SpLip)
YP_002221657.1	Probable lipoprotein (SpLip)
YP_002221669.1	Probable lipoprotein (SpLip)
YP_002221670.1	Probable lipoprotein (SpLip)
YP_002221675.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002221682.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_002221685.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_002221687.1	predicted hypothetical integral membrane protein in Borrelia garinii and Borrelia burgdorferi; amidation motif (Prosite)
YP_002221690.1	catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate
YP_002221692.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_002221693.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_002221696.1	MICROBODIES_CTER motif (Prosite)
YP_002221702.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_002221704.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_002221705.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_002221707.1	Probable lipoprotein (SpLip)
YP_002221714.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_002221719.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_002221721.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_002221722.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_002221726.1	UPF0054 motif (Prosite)
YP_002221728.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_002221731.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_002221733.1	MICROBODIES_CTER and DDC_GAD_HDC_YDC motifs (Prosite)
YP_002221734.1	COF_1 and COF_2 motifs (Prosite)
YP_002221737.1	Probable lipoprotein (SpLip)
YP_002221740.1	recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1
YP_002221753.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_002221754.1	RGD motif (Prosite)
YP_002221755.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits
YP_002221756.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.
YP_002221757.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex
YP_002221758.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex
YP_002221759.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex
YP_002221761.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex
YP_002221764.1	ATP_GTP_A motif (Prosite)
YP_002221766.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002221768.1	predicted phosphoribosyltransferases
YP_002221772.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_002221773.1	RGD motif (Prosite)
YP_002221775.1	RGD motif (Prosite)
YP_002221777.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_002221778.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_002221780.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_002221785.1	catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate
YP_002221786.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_002221787.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_002221788.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_002221793.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_002221797.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_002221798.1	contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation
YP_002221801.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_002221807.1	LEUCINE_ZIPPER motif (Prosite)
YP_002221809.1	Probable lipoprotein (SpLip)
YP_002221812.1	structural flagella protein
YP_002221813.1	involved in flagellin assembly
YP_002221815.1	catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate
YP_002221817.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_002221827.1	amylomaltase; acts to release glucose from maltodextrins
YP_002221830.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_002221831.1	2 amidation motifs and one RGD (Prosite)
YP_002221832.1	RGD motif (Prosite); Probable lipoprotein (SpLip)
YP_002221839.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_002221840.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_002221842.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_002221843.1	With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook
YP_002221844.1	binds to flagellin and appears to stabilize flagellin during flagella assembly
YP_002221847.1	ATP_GTP_A motif (Prosite)
YP_002221849.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_002221851.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_002221853.1	Possible lipoprotein (SpLip)
YP_002221856.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_002221860.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_002221865.1	amidation motif (Prosite)
YP_002221873.1	Probable lipoprotein (SpLip)
YP_002221878.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_002221880.1	catalyzes a two-step reaction, first charging an alanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002221885.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002221886.1	Probable lipoprotein (SpLip)
YP_002221887.1	amidation motif (Prosite)
YP_002221888.1	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_002221889.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_002221892.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_002221893.1	putative integral membrane protein
YP_002221894.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_002221895.1	amidation motif (Prosite)
YP_002221896.1	Transfers the fatty acyl group on membrane lipoproteins
YP_002221902.1	Probable lipoprotein (SpLip)
YP_002221907.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_002221911.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_002221912.1	MICROBODIES_CTER motif (Prosite)
YP_002221916.1	amidation motif (Prosite)
YP_002221917.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_002221919.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_002221920.1	Probable lipoprotein (SpLip)
YP_002221921.1	deletion in the protein; LEUCINE_ZIPPER motif (Prosite)
YP_002221923.1	putative membrane protein related to metalloendopeptidase
YP_002221928.1	amidation motif (Prosite)
YP_002221929.1	amidation motif (Prosite)
YP_002221931.1	Positive regulator of class III flagellar genes
YP_002221932.1	membrane protein involved in the flagellar export apparatus
YP_002221933.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_002221936.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_002221937.1	possible structural component of the flagellum that anchors the rod to the membrane
YP_002221939.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_002221940.1	interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring
YP_002221941.1	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_002221944.1	the hook connects flagellar basal body to the flagellar filament
YP_002221945.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod
YP_002221950.1	binds to and inhibits the function of flagella specific ATPase FliI
YP_002221951.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002221952.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_002221953.1	forms a junction between the M-ring and FlgB during flagella biosynthesis
YP_002221954.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_002221955.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod
YP_002221956.1	heat shock protein involved in degradation of misfolded proteins
YP_002221957.1	heat shock protein involved in degradation of misfolded proteins
YP_002221959.1	Probable lipoprotein (SpLip)
YP_002221960.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_002221964.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_002221970.1	MULTICOPPER_OXIDASE1 motif (Prosite)
YP_002221978.1	amidation motif (Prosite)
YP_002221980.1	LEUCINE_ZIPPER motif (Prosite)
YP_002221982.1	Probable lipoprotein (SpLip)
YP_002221983.1	Probable lipoprotein (SpLip)
YP_002221987.1	Probable lipoprotein (SpLip)
YP_002221989.1	Possible lipoprotein (SpLip)
YP_002221994.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_002221995.1	forms a direct contact with the tRNA during translation
YP_002221996.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_002221998.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002221999.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002222000.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_002222005.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_002222006.1	required for 70S ribosome assembly
YP_002222008.1	Probable lipoprotein (SpLip)
YP_002222013.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_002222017.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_002222019.1	catalyzes the removal of amino acids from the N termini of peptides
YP_002222021.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_002222024.1	Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002222025.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_002222029.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_002222030.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_002222035.1	Probable lipoprotein (SpLip)
YP_002222036.1	Probable lipoprotein (SpLip)
YP_002222038.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_002222039.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_002222040.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_002222041.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_002222042.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_002222043.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_002222044.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_002222045.1	binds directly to 23S ribosomal RNA
YP_002222047.1	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_002222048.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_002222050.1	Probable lipoprotein (SpLip)
YP_002222051.1	Probable lipoprotein (SpLip)
YP_002222054.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_002222063.1	Probable lipoprotein (SpLip)
YP_002222067.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_002222074.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_002222076.1	RGD and UPF0011 motifs (Prosite)
YP_002222089.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_002222091.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_002222094.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_002222096.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_002222102.1	AMIDATION and MICROBODIES_CTER motifs (Prosite)
YP_002222104.1	AMIDATION motif (Prosite)
YP_002222106.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_002222109.1	Probable lipoprotein (SpLip)
YP_002222110.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_002222113.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_002222118.1	amidation and RGD motifs (Prosite)
YP_002222120.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_002222122.1	amidation motif (Prosite)
YP_002222123.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_002222125.1	Probable lipoprotein (SpLip)
YP_002222126.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_002222127.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_002222128.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_002222129.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_002222130.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_002222131.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_002222132.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_002222133.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_002222134.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_002222135.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_002222136.1	one of the stabilizing components for the large ribosomal subunit
YP_002222137.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_002222138.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_002222139.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_002222140.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_002222141.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_002222142.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_002222143.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_002222144.1	binds 5S rRNA along with protein L5 and L25
YP_002222145.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_002222146.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_002222147.1	late assembly protein
YP_002222148.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_002222149.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_002222150.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_002222151.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_002222152.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_002222153.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_002222154.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_002222157.1	LEUCINE_ZIPPER and MICROBODIES_CTER motifs (Prosite)
YP_002222158.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_002222161.1	RGD and LEUCINE_ZIPPER motifs (Prosite)
YP_002222162.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_002222163.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_002222166.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_002222167.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_002222172.1	2 LEUCINE_ZIPPER motifs (Prosite)
YP_002222173.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_002222174.1	LEUCINE_ZIPPER motf (Prosite)
YP_002222179.1	amidation motif (Prosite)
YP_002222180.1	Probable lipoprotein (SpLip)
YP_002222181.1	ZINC_PROTEASE motif (Prosite)
YP_002222185.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_002222187.1	LEUCINE_ZIPPER and AMIDATION motifs (Prosite)
YP_002222188.1	Probable lipoprotein (SpLip)
YP_002222190.1	Catalyzes the formation of PRPP from ATP and ribose 5-phosphate
YP_002222193.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_002222198.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_002222200.1	amidation motif (Prosite)
YP_002222205.1	functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose
YP_002222206.1	molecular chaperone
YP_002222207.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_002222218.1	Catalyzes the phosphorylation of UMP to UDP
YP_002222221.1	LEUCINE_ZIPPER motif (Prosite)
YP_002222222.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_002222225.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_002222227.1	catalyzes branch migration in Holliday junction intermediates
YP_002222232.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_002222234.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_002222238.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_002222242.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_002222243.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_002222245.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_002222250.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_002222252.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_002222253.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_002222254.1	binds and unfolds substrates as part of the ClpXP protease
YP_002222256.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_002222263.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_002222267.1	catalyzes the removal of amino acids from the N termini of peptides
YP_002222274.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_002222275.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_002222277.1	Probable lipoprotein (SpLip)
YP_002222281.1	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc)
YP_002222282.1	Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate
YP_002222286.1	AMIDATION motif (Prosite)
YP_002222287.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_002222290.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_002222291.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_002222296.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_002222297.1	class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine
YP_002222298.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_002222301.1	Possible lipoprotein (SpLip)
YP_002222302.1	Probable lipoprotein (SpLip)
YP_002222319.1	RGD motif (Prosite)
YP_002222320.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_002222322.1	catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate
YP_002222327.1	Possible lipoprotein (SpLip)
YP_002222329.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_002222332.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_002222333.1	amidation motif (Prosite)
YP_002222334.1	Essential for efficient processing of 16S rRNA
YP_002222335.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_002222336.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_002222338.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_002222339.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_002222340.1	carries the fatty acid chain in fatty acid biosynthesis
YP_002222341.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_002222343.1	LEUCINE_ZIPPER motif (Prosite)
YP_002222344.1	amidation motif (Prosite)
YP_002222345.1	amidation motif (Prosite)
YP_002222347.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_002222350.1	functions in MreBCD complex in some organisms
YP_002222351.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_002222355.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_002222356.1	Possible lipoprotein (SpLip)
YP_002222362.1	catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate
YP_002222363.1	CoADR; specific for coenzyme A disulfide; requires NADH; involved in protecting cells against reactive oxygen species by recycling coenzyme A disulfide which can reduce hydrogen peroxide
YP_002222365.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_002222370.1	amidation motif (Prosite)
YP_002222374.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_002222376.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_002222378.1	amidation motif (Prosite)
YP_002222386.1	amidation motif (Prosite)
YP_002222389.1	member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions
YP_002222390.1	AMIDATION motif (Prosite)
YP_002222391.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_002222392.1	LEUCINE_ZIPPER motif (Prosite); Possible lipoprotein (SpLip)
YP_002222395.1	RGD motif (Prosite)
YP_002222400.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_002222402.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_002222406.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_002222408.1	makes up the distal portion of the flagellar basal body rod
YP_002222411.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_002222414.1	involved in the peptidyltransferase reaction during translation
YP_002222415.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_002222419.1	stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus
YP_002222420.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_002222421.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_002222425.1	Possible lipoprotein (SpLip)
YP_002222429.1	SERPIN motif (Prosite)
YP_002222430.1	amidation motif
YP_002222433.1	This protein performs the mismatch recognition step during the DNA repair process
YP_002222435.1	amidation motif (Prosite)
YP_002222436.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_002222437.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_002222440.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_002222442.1	Probable lipoprotein (SpLip)
YP_002222443.1	AKH motif (Prosite)
YP_002222445.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_002222449.1	mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase
YP_002222451.1	ATP_GTP_A motif (Prosite)
YP_002222452.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_002222453.1	RCC1_2 motif (Prosite)
YP_002222454.1	mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase
YP_002222456.1	ATP_GTP_A motif (Prosite)
YP_002222457.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_002222459.1	catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_002222461.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_002222462.1	Possible lipoprotein (SpLip)
YP_002222473.1	Probable lipoprotein (SpLip)
YP_002222474.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin)
YP_002222477.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_002222478.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_002222481.1	Probable lipoprotein (SpLip)
YP_002222482.1	catalyzes the degradation of arginine to citruline and ammonia
YP_002222483.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_002222485.1	catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_002223293.1	BppA gene
YP_002223297.1	Probable lipoprotein (SpLip)
YP_002223415.1	Possible lipoprotein (SpLip)
YP_002223416.1	Probable lipoprotein (SpLip)
YP_002223417.1	Probable lipoprotein (SpLip)
YP_002223418.1	Probable lipoprotein (SpLip)
YP_002223419.1	Probable lipoprotein (SpLip)
YP_002223420.1	Probable lipoprotein (SpLip)
YP_002223422.1	Probable lipoprotein (SpLip)
YP_002223423.1	Probable lipoprotein (SpLip)
YP_002223424.1	Probable lipoprotein (SpLip)
YP_002223425.1	Probable lipoprotein (SpLip)
YP_002223426.1	Probable lipoprotein (SpLip)
YP_002223427.1	Probable lipoprotein (SpLip)
YP_002223428.1	Probable lipoprotein (SpLip)
YP_002223429.1	Probable lipoprotein (SpLip)
YP_002223430.1	Probable lipoprotein (SpLip)
YP_002223432.1	amidation motif (Prosite); Probable lipoprotein (SpLip)
YP_002223433.1	Probable lipoprotein (SpLip)
YP_002223434.1	MICROBODIES_CTER motif (Prosite); Probable lipoprotein (SpLip)
YP_002223436.1	Probable lipoprotein (SpLip)
YP_002223437.1	Probable lipoprotein (SpLip)
YP_002223438.1	Probable lipoprotein (SpLip)
YP_002223439.1	Probable lipoprotein (SpLip)
YP_002223440.1	Probable lipoprotein (SpLip)
YP_002223444.1	Probable lipoprotein (SpLip)
YP_002223447.1	Amidation motif (Product); Possible lipoprotein (SpLip)
YP_002223450.1	Possible lipoprotein (SpLip)
YP_002223451.1	RGD motif (Prosite); Probable lipoprotein (SpLip)
YP_002223455.1	Probable lipoprotein (SpLip)
YP_002223459.1	Possible lipoprotein (SpLip)
YP_002223461.1	Probable lipoprotein (SpLip)
YP_002223462.1	Probable lipoprotein (SpLip)
YP_002223463.1	Possible lipoprotein (SpLip)
YP_002223464.1	Probable lipoprotein (SpLip)
YP_002223465.1	Probable lipoprotein (SpLip)
YP_002223466.1	Probable lipoprotein (SpLip)
YP_002223467.1	Probable lipoprotein (SpLip)
YP_002223468.1	Probable lipoprotein (SpLip)
YP_002223469.1	Probable lipoprotein (SpLip)
YP_002223470.1	SBP_BACTERIAL_3 motif (Prosite)
YP_002223471.1	Probable lipoprotein (SpLip)
YP_002223472.1	PRENYLATION motif (Prosite)
YP_002223473.1	Probable lipoprotein (SpLip)
YP_002223476.1	RGD motif (Prosite)
YP_002223477.1	Probable lipoprotein (SpLip)
YP_002223479.1	Probable lipoprotein (SpLip)
YP_002223480.1	Probable lipoprotein (SpLip)
YP_002223481.1	Probable lipoprotein (SpLip)
YP_002223486.1	Probable lipoprotein (SpLip)
YP_002223487.1	Possible lipoprotein (SpLip)
YP_002223503.1	LEUCINE_ZIPPER motif (Prosite)
YP_002223505.1	Probable lipoprotein (SpLip)
YP_002223506.1	Probable lipoprotein (SpLip)
YP_002223507.1	Possible lipoprotein (SpLip)
YP_002223508.1	Possible lipoprotein (SpLip)
YP_002223509.1	ATP_GTP_A motif (Prosite)
YP_002223513.1	Possible lipoprotein (SpLip)
YP_002223524.1	Probable lipoprotein (SpLip)
YP_002223530.1	Probable lipoprotein (SpLip)
YP_002223533.1	Probable lipoprotein (SpLip)
YP_002223534.1	Probable lipoprotein (SpLip)
YP_002223535.1	AMIDATION motif (Prosite); Probable lipoprotein (SpLip)
YP_002223544.1	Probable lipoprotein (SpLip)
YP_002223545.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_002223547.1	Probable lipoprotein (SpLip)
YP_002223551.1	Probable lipoprotein (SpLip)
YP_002223552.1	Probable lipoprotein (SpLip)
YP_002223553.1	Probable lipoprotein (SpLip)
YP_002223558.1	Probable lipoprotein (SpLip)
YP_002223568.1	Probable lipoprotein (SpLip)
YP_002223569.1	Probable lipoprotein (SpLip)
YP_002223570.1	Probable lipoprotein (SpLip)
YP_002223571.1	Probable lipoprotein (SpLip)
YP_002223579.1	LEUCINE_ZIPPER motif (Prosite)
YP_002223580.1	Probable lipoprotein (SpLip)
YP_002223586.1	Probable lipoprotein (SpLip)
YP_002223588.1	Probable lipoprotein (SpLip)
YP_002223590.1	Probable lipoprotein (SpLip)
YP_002223598.1	Probable lipoprotein (SpLip)
YP_002223601.1	Probable lipoprotein (SpLip)
YP_002223603.1	probable lipoprotein (SpLip)
YP_002223604.1	Probable lipoprotein (SpLip)
YP_002223608.1	Probable lipoprotein (SpLip)
YP_002223612.1	Probable lipoprotein (SpLip)
YP_002223623.1	Probable lipoprotein (SpLip)
YP_002223626.1	Probable lipoprotein (SpLip)
YP_002223627.1	Probable lipoprotein (SpLip)
YP_002223631.1	Probable lipoprotein (SpLip)
YP_002223667.1	Probable lipoprotein (SpLip)
YP_002223669.1	Probable lipoprotein (SpLip)
YP_002223679.1	Probable lipoprotein (SpLip)
YP_002223681.1	Probable lipoprotein (SpLip)
YP_002223683.1	Probable lipoprotein (SpLip)
YP_002223686.1	Probable lipoprotein (SpLip)
YP_002223711.1	MICROBODIES_CTER motif (Prosite)
YP_002223713.1	amidation motif (Prosite)
YP_002223718.1	Probable lipoprotein (SpLip)
YP_002223720.1	MICROBODIES_CTER motif (Prosite)
YP_002223723.1	RGD motif (Prosite)
YP_002223727.1	Probable lipoprotein (SpLip)
YP_002223729.1	Probable lipoprotein (SpLip)
YP_002223735.1	Probable lipoprotein (SpLip)
YP_002223737.1	Probable lipoprotein (SpLip)
YP_002223738.1	Probable lipoprotein (SpLip)
YP_002223741.1	Probable lipoprotein (SpLip)
YP_002223742.1	Probable lipoprotein (SpLip)
YP_002223744.1	Probable lipoprotein (SpLip)
YP_002223745.1	Probable lipoprotein (SpLip)
YP_002223746.1	Probable lipoprotein (SpLip)
YP_002223748.1	Probable lipoprotein (SpLip)
YP_002223752.1	Probable lipoprotein (SpLip)
YP_002223754.1	Probable lipoprotein (SpLip)
YP_002223757.1	catalyzes the hydrolysis of acylphosphate
YP_002223760.1	Probable lipoprotein (SpLip)
YP_002223765.1	Probable lipoprotein (SpLip)
YP_002223766.1	Probable lipoprotein (SpLip)
YP_002223793.1	Probable lipoprotein (SpLip)
YP_002223794.1	Probable lipoprotein (SpLip)
YP_002223795.1	Possible lipoprotein (SpLip)
YP_002223797.1	Probable lipoprotein (SpLip)
YP_002223798.1	Probable lipoprotein (SpLip)
YP_002223835.1	Probable lipoprotein (SpLip)
YP_002223861.1	Probable lipoprotein (SpLip)
YP_002223862.1	Probable lipoprotein (SpLip)
YP_002223864.1	Probable lipoprotein (SpLip)
YP_002223873.1	Probable lipoprotein (SpLip)
YP_002223877.1	Probable lipoprotein (SpLip)
YP_002223880.1	Probable lipoprotein (SpLip)
YP_002223885.1	Probable lipoprotein (SpLip)
YP_002223887.1	Probable lipoprotein (SpLip)
YP_002223888.1	Probable lipoprotein (SpLip)
YP_002223889.1	Probable lipoprotein (SpLip)
YP_002223893.1	Probable lipoprotein (SpLip)
YP_002223894.1	Probable lipoprotein (SpLip)
YP_002223900.1	Probable lipoprotein (SpLip)
YP_002223901.1	Probable lipoprotein (SpLip)
YP_002223910.1	Probable lipoprotein (SpLip)