-- dump date 20140619_011501 -- class Genbank::Gene -- table gene_note -- id note 12139518 This region contains an authentic frame shift and is not the result of a sequencing artifact; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase, authentic frameshift; similar to GP:15075909, GB:D13626, and PID:285995; identified by sequence similarity; putative; corresponds to BRA0084 12139519 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; conserved hypothetical protein, authentic point mutation; similar to GP:4063783, and GP:4063783; identified by sequence similarity; putative; corresponds to BRA0085 12139550 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; HlyD family secretion protein, authentic point mutation; corresponds to BRA0117 12139555 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; flagellar motor switch protein FliG, authentic point mutation; similar to SP:O54244; identified by sequence similarity; putative; corresponds to BRA0122 12139582 This region contains an authentic frame shift and is not the result of a sequencing artifact; 3-hydroxyisobutyrate dehydrogenase family protein, authentic frameshift; similar to GB:J00222, GB:S55273, SP:P01854, PID:184760, PID:2300106, and PID:386807; identified by sequence similarity; putative; corresponds to BRA0149 12139621 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; glucose/galactose transporter, authentic point mutation; similar to SP:Q44623, GB:S68805, SP:P50440, and PID:791049; identified by sequence similarity; putative; corresponds to BRA0190 12139639 This region contains a gene with one or more premature stops or frameshifts, and is not the result of a sequencing artifact; peptidase, M16 family, degenerate; corresponds to BRA0208 12139656 This region contains an authentic frame shift and is not the result of a sequencing artifact; oxidoreductase, FMN-binding, authentic frameshift; corresponds to BRA0225 12139660 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; DNA-binding response regulator, authentic point mutation; similar to GP:15159265, GB:J00230, SP:P01857, SP:P01859, SP:P01860, SP:P01861, PID:1335110, PID:1335112, PID:1335113, PID:184758, PID:567112, and PID:577056; identified by sequence similarity; putative; corresponds to BRA0229 12139703 This region contains an authentic frame shift and is not the result of a sequencing artifact; ABC transporter, ATP-binding protein, authentic frameshift; identified by match to TIGR protein family HMM TIGR00954; corresponds to BRA0272 12139770 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; glutamate decarboxylase, authentic point mutation; similar to SP:P34210, and PID:550102; identified by sequence similarity; putative; corresponds to BRA0338 12139771 This region contains an authentic frame shift and is not the result of a sequencing artifact; amino acid antiporter, putative, authentic frameshift; similar to GP:6009438, and SP:Q54152; identified by sequence similarity; putative; corresponds to BRA0339 12139826 This region contains an authentic frame shift and is not the result of a sequencing artifact; branched-chain amino acid ABC transporter, ATP-binding/permease protein, authentic frameshift; similar to GP:17985077, GB:M99427, PID:151709, and SP:Q52451; identified by sequence similarity; putative; corresponds to BRA0394 12139844 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; Bme15 protein, authentic point mutation; similar to GP:5478245, and SP:Q9KR69; identified by sequence similarity; putative; corresponds to BRA0412 12139852 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; glycosyltransferase, putative, authentic point mutation; similar to GP:5478238, and GP:5478238; identified by sequence similarity; putative; corresponds to BRA0420 12139857 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; membrane protein Bme3, authentic point mutation; similar to GP:5478234, and GP:5478234; identified by sequence similarity; putative; corresponds to BRA0425 12139896 This region contains an authentic frame shift and is not the result of a sequencing artifact; ABC transporter, ATP-binding protein, authentic frameshift; corresponds to BRA0464 12139902 This region contains an authentic frame shift and is not the result of a sequencing artifact; transcriptional regulator, MarR family, authentic frameshift; similar to GP:15074064, and GP:15074064; identified by sequence similarity; putative; corresponds to BRA0470 12139981 This region contains an authentic frame shift and is not the result of a sequencing artifact; IS711, transposase orfB FRAMESHIFT; similar to PIR:PN0685; identified by sequence similarity; putative; corresponds to BRA0551 12139984 This region contains an authentic frame shift and is not the result of a sequencing artifact; ISBm1, transposase orfB, interruption-C; similar to GP:4071222, and GP:4071222; identified by sequence similarity; putative; corresponds to BRA0554 12139989 This region contains an authentic frame shift and is not the result of a sequencing artifact; ISBm1, transposase orfA, interruption-N; similar to GP:4071219, and GP:4071219; identified by sequence similarity; putative; corresponds to BRA0559 12138885 This region contains an authentic frame shift and is not the result of a sequencing artifact; conserved hypothetical protein, authentic frameshift; similar to GP:15157319; identified by sequence similarity; putative; corresponds to BRA0663 12138889 This region contains an authentic frame shift and is not the result of a sequencing artifact; branched-chain amino acid aminotransferase, putative, authentic frameshift; similar to SP:P00510; identified by sequence similarity; putative; corresponds to BRA0667 12138911 This region contains an authentic frame shift and is not the result of a sequencing artifact; sugar ABC transporter, ATP-binding protein, authentic frameshift; similar to GP:15076324, and GP:17984770; identified by sequence similarity; putative; corresponds to BRA0690 12138917 This region contains an authentic frame shift and is not the result of a sequencing artifact; fdhD protein, authentic frameshift; similar to GP:11545454, GB:X60787, GB:S41456, SP:Q01167, PID:1388160, and PID:33854; identified by sequence similarity; putative; corresponds to BRA0696 12138934 This region contains an authentic frame shift and is not the result of a sequencing artifact; carbohydrate kinase, PfkB family, authentic frameshift; similar to GP:15158706; identified by sequence similarity; putative; corresponds to BRA0713 12138937 This region contains an authentic frame shift and is not the result of a sequencing artifact; iolB protein, authentic frameshift; similar to GP:15158709; identified by sequence similarity; putative; corresponds to BRA0716 12138997 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; multidrug resistance protein, putative, authentic point mutation; corresponds to BRA0776 12139001 This region contains an authentic frame shift and is not the result of a sequencing artifact; 6-phosphogluconate dehydratase, authentic frameshift; similar to SP:Q9Z3S0; identified by sequence similarity; putative; corresponds to BRA0780 12139004 This region contains an authentic frame shift and is not the result of a sequencing artifact; peptide ABC transporter, ATP-binding protein, authentic frameshift; similar to GP:15161804, and SP:P75796; identified by sequence similarity; putative; corresponds to BRA0783 12139019 This region contains an authentic frame shift and is not the result of a sequencing artifact; transcriptional regulator, LysR family, putative, authentic frameshift; similar to GP:3152946, and GP:3152946; identified by sequence similarity; putative; corresponds to BRA0798 12139029 This region contains an authentic frame shift and is not the result of a sequencing artifact; ABC transporter, permease protein, authentic frameshift; corresponds to BRA0808 12139032 This region contains an authentic frame shift and is not the result of a sequencing artifact; mannitol dehydrogenase family protein, authentic frameshift; similar to GP:15141329, GB:Y00318, SP:P05156, PID:1335054, PID:1335055, PID:1335056, and PID:182607; identified by sequence similarity; putative; corresponds to BRA0811 12139036 This region contains an authentic frame shift and is not the result of a sequencing artifact; multidrug efflux protein, putative, authentic frameshift; similar to GP:15160108, and GP:17431673; identified by sequence similarity; putative; corresponds to BRA0815 12139076 This region contains an authentic frame shift and is not the result of a sequencing artifact; oxidoreductase, FAD-binding, authentic frameshift; corresponds to BRA0854 12139103 This region contains an authentic frame shift and is not the result of a sequencing artifact; citrate lyase, beta subunit, putative, authentic frameshift; similar to SP:P77770; identified by sequence similarity; putative; corresponds to BRA0881 12139167 This region contains an authentic frame shift and is not the result of a sequencing artifact; transcriptional regulator, GntR family, authentic frameshift; similar to GP:15160164, and GP:15160164; identified by sequence similarity; putative; corresponds to BRA0944 12139201 This region contains an authentic frame shift and is not the result of a sequencing artifact; conserved hypothetical protein, authentic frameshift; similar to GB:L07414, GB:Z15017, GB:X96710, SP:P29965, PID:1518170, PID:180124, PID:37270, PID:38412, and PID:38484; identified by sequence similarity; putative; corresponds to BRA0978 12139208 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; transcriptional regulator, putative, authentic point mutation; similar to GP:15075893; identified by sequence similarity; putative; corresponds to BRA0985 12139230 This region contains an authentic frame shift and is not the result of a sequencing artifact; glutamyl-tRNA(Gln) amidotransferase, A subunit, putative, authentic frameshift; similar to GP:15158785, SP:Q05370, and PID:49224; identified by sequence similarity; putative; corresponds to BRA1007 12139312 This region contains an authentic frame shift and is not the result of a sequencing artifact; dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase, putative, authentic frameshift; similar to GP:3077808, and SP:P27747; identified by sequence similarity; putative; corresponds to BRA1083 12139314 This region contains an authentic frame shift and is not the result of a sequencing artifact; dehydrogenase complex, E1 component, dehydrogenase, authentic frameshift; corresponds to BRA1085 12139324 This region contains an authentic frame shift and is not the result of a sequencing artifact; peptide ABC transporter, ATP-binding protein, putative, authentic frameshift; similar to SP:P24137; identified by sequence similarity; putative; corresponds to BRA1095 12139329 This region contains an authentic frame shift and is not the result of a sequencing artifact; peptide ABC transporter, permease protein, putative, authentic frameshift; similar to GP:14799990; identified by sequence similarity; putative; corresponds to BRA1100 12139333 This region contains an authentic frame shift and is not the result of a sequencing artifact; polyamine ABC transporter, periplasmic polyamine-binding protein, putative, authentic frameshift; similar to GP:14523615, and GP:18092558; identified by sequence similarity; putative; corresponds to BRA1104 12139336 This region contains an authentic frame shift and is not the result of a sequencing artifact; polyamine ABC transporter, ATP-binding protein, authentic point mutation; similar to GP:14523530, and GP:14523530; identified by sequence similarity; putative; corresponds to BRA1107 12139343 This region contains an authentic frame shift and is not the result of a sequencing artifact; D-lactate dehydrogenase, authentic frameshift; similar to SP:P06149, GB:M35107, SP:P24132, and PID:144747; identified by sequence similarity; putative; corresponds to BRA1114 12139382 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; chemotaxis motC protein, putative, authentic point mutation; similar to GP:15155509, GB:X04588, GB:J00312, GB:M12128, SP:P12324, PID:37424, and PID:553799; identified by sequence similarity; putative; corresponds to BRA1143 12139399 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; catechol 2,3-dioxygenase, authentic point mutation; similar to GP:3046913, GB:U08106, GB:U08107, GB:Z32772, GB:Z32773, GB:Z32774, GB:L13266, GB:L13267, GB:L13268, GB:L05666, SP:Q05586, PID:219920, PID:292287, PID:472846, and PID:472848; identified by sequence similarity; putative; corresponds to BRA1160 12139466 This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; branched-chain amino acid ABC transporter, permease protein, authentic point mutation; similar to GP:18160076; identified by sequence similarity; putative; corresponds to BRA1195 12137230 3-hydroxy-3-methylglutarate-CoA lyase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to EGAD:19426; corresponds to BR0017 12138616 amino acid efflux protein, LysE family, putative, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error;identified by similarity to OMNI:NTL02ML3358; corresponds to BR0075 12138671 glutathione-dependent formaldehyde dehydrogenase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error;identified by similarity to EGAD:20238; corresponds to BR0130 12138673 ATP-dependent helicase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to SP:P37024; corresponds to BR0132 12138687 NADP-dependent malic enzyme, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to SP:O30808; corresponds to BR0146 12138739 transcriptional regulator, LuxR family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to GP:15140544; corresponds to BR0197 12138743 transcriptional regulator, Fis family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to OMNI:NTL02ML5216; match to protein family HMM PF02954; match to protein family HMM TIGR01199; corresponds to BR0201 12138747 transcriptional regulator, LacI family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to OMNI:CC2053; corresponds to BR0205 12138748 ABC transporter, HlyB/MsbA family, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error;identified by similarity to OMNI:NTL02ML0644; corresponds to BR0206 12136660 invasion protein B, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to SP:P35641; corresponds to BR0340 12136661 sensor histidine kinase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to GP:13641465; corresponds to BR0341 12136691 membrane protein, putative, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error;identified by similarity to OMNI:NTL02ML5834; corresponds to BR0371 12136733 GGDEF domain, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to GP:15140377; corresponds to BR0413 12136741 phosphoglycerate mutase family protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to OMNI:CC1351; corresponds to BR0421 12136743 cold-shock family protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to SP:Q9Z3S6; match to protein family HMM PF00313; corresponds to BR0423 12136821 lipoprotein, putative, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error;identified by similarity to OMNI:NTL02ML5937; corresponds to BR0501 12136849 transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error;identified by similarity to SP:P05822; corresponds to BR0532 12136852 transposase, truncation; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error;identified by similarity to GP:17983395; corresponds to BR0536 12136912 conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to GP:15155968; corresponds to BR0596 12136917 conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to GP:15155976; corresponds to BR0601 12137184 amino acid ABC transporter, periplasmic amino acid-binding protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to GP:15074804; corresponds to BR0862 12137939 peptide chain release factor 2, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to GP:15619432; corresponds to BR0917 12137942 IS711, transposase orfB, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to PIR:PN0685; corresponds to BR0920 12137972 membrane protein, putative, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error;identified by similarity to GP:15074450; corresponds to BR0949 12138002 queuine tRNA-ribosyltransferase, truncation; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error;identified by similarity to SP:O32053; match to protein family HMM PF01702; match to protein family HMM TIGR00449; corresponds to BR0976 12138004 IS711, transposase orfB, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to PIR:PN0685; corresponds to BR0978 12138053 thioredoxin reductase, putative, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error;identified by similarity to OMNI:NTL02ML0627; corresponds to BR1027 12138068 membrane protein, putative, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to GP:9105279; corresponds to BR1042 12138217 propionyl-CoA carboxylase, beta subunit, putative, internal deletion; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to GP:15141335; corresponds to BR1188 12138287 CBS domain protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to OMNI:NTL02ML0146; corresponds to BR1255 12138347 acyl-CoA dehydrogenase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error;identified by similarity to OMNI:NTL02ML0952; corresponds to BR1313 12138352 transcriptional regulator, LysR family, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error;identified by similarity to OMNI:NTL02ML0986; corresponds to BR1318 12138354 oxidase/dehydrogenase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error;identified by similarity to OMNI:NTL02ML0993; corresponds to BR1320 12138356 membrane protein, putative, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to OMNI:NTL01SM02005; corresponds to BR1322 12138409 conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to OMNI:NTL01SM02043; corresponds to BR1376 12138481 peptidoglycan-binding protein, putative, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to OMNI:NTL02ML1242; corresponds to BR1448 12138482 transporter, putative, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to GP:15981705; corresponds to BR1449 12138547 transglycosylase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error;identified by similarity to GP:15074494; match to protein family HMM PF01464; corresponds to BR1513 12137298 ABC transporter, ATP-binding/permease protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by match to protein family HMM PF00005; match to protein family HMM PF00664; corresponds to BR1544 12137299 ABC transporter, ATP-binding/permease protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error;identified by similarity to OMNI:NTL02ML2098; corresponds to BR1545 12137301 purine nucleoside permease, putative, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error;identified by similarity to GP:3581905; corresponds to BR1547 12137306 conserved domain protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to GP:9454389; corresponds to BR1552 12137340 peptide ABC transporter, periplasmic peptide-binding protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error;identified by similarity to GP:12082083; corresponds to BR1586 12137384 dihydroxyacetone kinase family protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to GP:15141347; corresponds to BR1627 12137385 dihydroxyacetone kinase family protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to GP:15141347; corresponds to BR1628 12137393 oxidoreductase, GMC family, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error;identified by similarity to OMNI:NTL02ML2014; corresponds to BR1636 12137434 ABC transporter, ATP-binding/permease protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error;identified by similarity to GP:15075093; corresponds to BR1670 12137482 transcriptional regulator, GntR family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to OMNI:NTL02ML5856; corresponds to BR1718 12137534 photosynthesis protein modulator, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to EGAD:40368; corresponds to BR1770 12137544 transporter, putative, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to SP:Q07609; corresponds to BR1780 12137552 branched-chain amino acid ABC transporter, ATP-binding protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to EGAD:14464; corresponds to BR1788 12137557 D-amino acid dehydrogenase, small subunit, putative, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; corresponds to BR1793 12137659 transporter, putative, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to GP:15076110; corresponds to BR1881 12137672 transcriptional regulator, GntR family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to OMNI:NTL02ML0901; corresponds to BR1894 12137687 conserved hypothetical protein; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to OMNI:NTL01BM0154; corresponds to BR1909 12137733 amino acid ABC transporter, permease protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error;identified by similarity to OMNI:NTL01CA0879; corresponds to BR1954 12137747 cysteine synthase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error;identified by similarity to SP:P73410; corresponds to BR1967