-- dump date   	20140619_011655
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_005108025.1	identified by match to PFAM protein family HMM PF03428
YP_005108029.1	similar to GB:M77016, SP:P28289, PID:339948, GB:M77016, SP:P28289, and PID:339948; identified by sequence similarity; putative
YP_005108030.1	identified by match to PFAM protein family HMM PF01156
YP_005108031.1	identified by match to TIGR protein family HMM TIGR00023
YP_005108032.1	similar to GP:13022200, and GP:17134506; identified by sequence similarity; putative
YP_005108033.1	similar to GP:13162075, GB:X52974, SP:P40598, and PID:48736; identified by sequence similarity; putative
YP_005108034.1	similar to GP:11065692; identified by sequence similarity; putative
YP_005108035.1	similar to GP:15141208, and GP:15141208; identified by sequence similarity; putative
YP_005108036.1	similar to GP:15158815, and GP:6018425; identified by sequence similarity; putative
YP_005108037.1	catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin
YP_005108038.1	identified by match to PFAM protein family HMM PF00550
YP_005108039.1	bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate
YP_005108040.1	synthesizes isochorismate acid from chorismate
YP_005108041.1	similar to GP:13959028, and GP:1778502; identified by sequence similarity; putative
YP_005108042.1	identified by match to PFAM protein family HMM PF00174
YP_005108043.1	identified by match to PFAM protein family HMM PF01292
YP_005108045.1	similar to GP:15157424; identified by sequence similarity; putative
YP_005108046.1	similar to GP:15157423, and GP:15157423; identified by sequence similarity; putative
YP_005108047.1	similar to GP:14523197; identified by sequence similarity; putative
YP_005108048.1	similar to GB:Z11566, GB:J04991, GB:X53305, GB:M31303, GB:D28428, GB:X94912, SP:P16949, PID:1246757, PID:189388, PID:189426, PID:35595, and PID:57870; identified by sequence similarity; putative
YP_005108049.1	similar to GP:15076000; identified by sequence similarity; putative
YP_005108050.1	similar to GB:M93015, SP:P29916, and PID:150623; identified by sequence similarity; putative
YP_005108051.1	similar to GP:15159144; identified by sequence similarity; putative
YP_005108052.1	similar to GB:M93015, SP:P29916, and PID:150623; identified by sequence similarity; putative
YP_005108053.1	identified by match to PFAM protein family HMM PF00903
YP_005108054.1	similar to GB:L13289, SP:P47721, PID:551904, GB:M11147, GB:M10119, GB:M12938, GB:X03742, GB:X03743, SP:P02792, PID:1340145, PID:1340146, PID:182514, PID:182516, PID:182518, PID:2230869, and PID:28519; identified by sequence similarity; putative
YP_005108055.1	identified by match to TIGR protein family HMM TIGR01500
YP_005108056.1	similar to SP:P27746, GB:X52592, and PID:46994; identified by sequence similarity; putative
YP_005108057.1	identified by match to TIGR protein family HMM TIGR01348
YP_005108058.1	identified by match to TIGR protein family HMM TIGR00507
YP_005108061.1	similar to GP:397973; identified by sequence similarity; putative
YP_005108064.1	similar to GB:L33799, and PID:642908; identified by sequence similarity; putative
YP_005108065.1	similar to GB:M57423, SP:P09329, SP:P11908, SP:P21108, PID:190522, and PID:2160401; identified by sequence similarity; putative
YP_005108066.1	similar to GB:L22075, SP:Q14344, and PID:404722; identified by sequence similarity; putative
YP_005108067.1	identified by match to PFAM protein family HMM PF00072
YP_005108069.1	identified by match to TIGR protein family HMM TIGR01330
YP_005108070.1	similar to GB:X15949, SP:P14316, and PID:33967; identified by sequence similarity; putative
YP_005108075.1	similar to GB:X01703, GB:K00557, SP:P04687, SP:P05215, PID:340019, PID:340021, and PID:37492; identified by sequence similarity; putative
YP_005108078.1	similar to SP:P04993, GB:X04581, GB:X04582, PID:42683, PID:42691, PID:882711, GB:U00096, and PID:1789182; identified by sequence similarity; putative
YP_005108079.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_005108080.1	similar to SP:O06005, GB:M86808, SP:P29803, and PID:190790; identified by sequence similarity; putative
YP_005108081.1	similar to GP:15075833; identified by sequence similarity; putative
YP_005108082.1	identified by match to PFAM protein family HMM PF00691
YP_005108083.1	similar to GP:5929876, and GP:8163894; identified by sequence similarity; putative
YP_005108084.1	similar to GP:5929875, and GP:5929875; identified by sequence similarity; putative
YP_005108085.1	similar to GP:5929874, and GP:5929874; identified by sequence similarity; putative
YP_005108086.1	similar to GP:5929873, and GP:5929873; identified by sequence similarity; putative
YP_005108087.1	similar to GP:5929872; identified by sequence similarity; putative
YP_005108088.1	similar to GP:8163889, and GP:8163889; identified by sequence similarity; putative
YP_005108089.1	similar to GP:5929870, and GP:5929870; identified by sequence similarity; putative
YP_005108090.1	similar to GP:8163887, and GP:8163887; identified by sequence similarity; putative
YP_005108091.1	similar to GP:5929868, and GP:5929868; identified by sequence similarity; putative
YP_005108092.1	similar to GP:5929867, and GP:5929867; identified by sequence similarity; putative
YP_005108093.1	similar to GP:5929866, and GP:5929866; identified by sequence similarity; putative
YP_005108094.1	identified by match to PFAM protein family HMM PF01471
YP_005108095.1	identified by match to TIGR protein family HMM TIGR01208
YP_005108096.1	similar to GP:14023404; identified by sequence similarity; putative
YP_005108097.1	similar to GP:15159530; identified by sequence similarity; putative
YP_005108099.1	similar to GP:15159532; identified by sequence similarity; putative
YP_005108100.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_005108101.1	similar to GP:13877130, and GP:13877130; identified by sequence similarity; putative
YP_005108102.1	similar to GP:2276407; identified by sequence similarity; putative
YP_005108103.1	similar to GP:14023390, and GP:14023390; identified by sequence similarity; putative
YP_005108104.1	catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine
YP_005108105.1	identified by match to PFAM protein family HMM PF01432
YP_005108106.1	similar to GP:15159542; identified by sequence similarity; putative
YP_005108107.1	similar to GP:14023385; identified by sequence similarity; putative
YP_005108108.1	identified by match to PFAM protein family HMM PF00581
YP_005108110.1	similar to GP:15157753; identified by sequence similarity; putative
YP_005108111.1	part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE
YP_005108112.1	similar to SP:P09833; identified by sequence similarity; putative
YP_005108113.1	identified by match to PFAM protein family HMM PF00583
YP_005108116.1	identified by match to TIGR protein family HMM TIGR01598
YP_005108117.1	identified by match to PFAM protein family HMM PF03741
YP_005108118.1	similar to GP:15158721; identified by sequence similarity; putative
YP_005108119.1	identified by match to PFAM protein family HMM PF02492
YP_005108120.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_005108121.1	similar to SP:O50657; identified by sequence similarity; putative
YP_005108122.1	similar to GP:15141223; identified by sequence similarity; putative
YP_005108124.1	similar to GP:14026189; identified by sequence similarity; putative
YP_005108125.1	identified by match to PFAM protein family HMM PF03808
YP_005108128.1	identified by match to PFAM protein family HMM PF00535
YP_005108130.1	similar to GP:15076091; identified by sequence similarity; putative
YP_005108131.1	similar to GP:6469270; identified by sequence similarity; putative
YP_005108132.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_005108133.1	similar to GP:15157291; identified by sequence similarity; putative
YP_005108134.1	similar to GP:15075242, and GP:17740614; identified by sequence similarity; putative
YP_005108135.1	similar to GP:15075241, and GP:17740613; identified by sequence similarity; putative
YP_005108136.1	similar to GP:15075240; identified by sequence similarity; putative
YP_005108137.1	identified by match to PFAM protein family HMM PF04039
YP_005108138.1	identified by match to PFAM protein family HMM PF00440
YP_005108139.1	similar to GP:9622950; identified by sequence similarity; putative
YP_005108140.1	similar to GP:15073579, and GP:15073579; identified by sequence similarity; putative
YP_005108141.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_005108142.1	identified by match to PFAM protein family HMM PF01052
YP_005108144.1	similar to SP:O54246; identified by sequence similarity; putative
YP_005108145.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_005108146.1	similar to GP:15155497, and GP:15073585; identified by sequence similarity; putative
YP_005108147.1	FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella
YP_005108148.1	involved in type III protein export during flagellum assembly
YP_005108149.1	similar to GP:2916792, and GP:2459710; identified by sequence similarity; putative
YP_005108150.1	identified by match to PFAM protein family HMM PF01569
YP_005108153.1	identified by match to PFAM protein family HMM PF03751
YP_005108154.1	similar to GB:Z17227, SP:Q08334, PID:393379, and PID:571296; identified by sequence similarity; putative
YP_005108155.1	identified by match to PFAM protein family HMM PF03633
YP_005108156.1	similar to GP:4433524; identified by sequence similarity; putative
YP_005108158.1	similar to GP:15159134; identified by sequence similarity; putative
YP_005108160.1	identified by match to PFAM protein family HMM PF01527
YP_005108162.1	similar to GP:5281442, GB:U12431, SP:P26378, PID:521144, and PID:905387; identified by sequence similarity; putative
YP_005108163.1	identified by match to TIGR protein family HMM TIGR00760
YP_005108164.1	similar to GB:M31651, GB:M27542, GB:X16351, GB:X05403, GB:X05792, GB:X16349, GB:X16350, SP:P04278, SP:P14689, PID:1335305, PID:36452, PID:825718, GB:M31651, GB:M27542, GB:X16351, GB:X05403, GB:X05792, GB:X16349, GB:X16350, SP:P04278, SP:P14689, PID:1335305, PID:36452, and PID:825718; identified by sequence similarity; putative
YP_005108165.1	similar to GB:J00222, GB:S55273, SP:P01854, PID:184760, PID:2300106, and PID:386807; identified by sequence similarity; putative
YP_005108166.1	similar to GP:10197687, GB:J03799, GB:X15005, GB:S37431, GB:M14199, GB:X61156, GB:U36484, SP:P08865, PID:1125065, PID:34272, and PID:386857; identified by sequence similarity; putative
YP_005108167.1	similar to GB:J00222, GB:S55273, SP:P01854, PID:184760, PID:2300106, and PID:386807; identified by sequence similarity; putative
YP_005108169.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella
YP_005108170.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_005108171.1	forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella
YP_005108172.1	makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella
YP_005108173.1	required for the assembly of the flagellar basal body P-ring; Bradyrhizobium japonicum has two types of flagella, a single thick flagella and a few thin flagella; the protein in this cluster is associated with the thin flagella
YP_005108174.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_005108175.1	similar to GP:12057224; identified by sequence similarity; putative
YP_005108176.1	part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod
YP_005108177.1	similar to GP:15073597, GB:X56253, GB:X56254, GB:X56255, GB:X56256, GB:X56257, GB:M16985, SP:P20645, PID:307147, and PID:825692; identified by sequence similarity; putative
YP_005108178.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_005108180.1	similar to GP:15130936; identified by sequence similarity; putative
YP_005108181.1	similar to GP:3419687; identified by sequence similarity; putative
YP_005108182.1	identified by match to PFAM protein family HMM PF02515
YP_005108183.1	identified by match to PFAM protein family HMM PF01524
YP_005108184.1	identified by match to PFAM protein family HMM PF03328
YP_005108186.1	similar to GB:L25675, PID:409767, and SP:P53641; identified by sequence similarity; putative
YP_005108189.1	similar to GP:15162141, and GP:15162141; identified by sequence similarity; putative
YP_005108190.1	similar to GB:L11566, SP:Q07020, PID:337493, GB:L11566, SP:Q07020, and PID:337493; identified by sequence similarity; putative
YP_005108193.1	similar to GP:15073704; identified by sequence similarity; putative
YP_005108194.1	similar to GP:15073706; identified by sequence similarity; putative
YP_005108196.1	similar to SP:P32718, PID:396419, GB:U00096, and PID:1790522; identified by sequence similarity; putative
YP_005108197.1	similar to GP:14026515, and SP:P52073; identified by sequence similarity; putative
YP_005108198.1	similar to SP:P52074; identified by sequence similarity; putative
YP_005108199.1	similar to GP:4007669; identified by sequence similarity; putative
YP_005108200.1	similar to GP:15155625, and GP:15073711; identified by sequence similarity; putative
YP_005108201.1	identified by match to TIGR protein family HMM TIGR00624
YP_005108202.1	identified by match to TIGR protein family HMM TIGR00948
YP_005108203.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_005108204.1	May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_005108205.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_005108207.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_005108210.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_005108211.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_005108214.1	identified by match to TIGR protein family HMM TIGR01668
YP_005108216.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_005108217.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme
YP_005108218.1	similar to GP:15073729; identified by sequence similarity; putative
YP_005108219.1	similar to SP:P08732; identified by sequence similarity; putative
YP_005108220.1	similar to GP:15155649; identified by sequence similarity; putative
YP_005108222.1	identified by match to PFAM protein family HMM PF03602
YP_005108223.1	identified by match to PFAM protein family HMM PF01734
YP_005108224.1	similar to GP:15073737; identified by sequence similarity; putative
YP_005108225.1	similar to GB:V00566, GB:J00299, GB:M29386, GB:D00411, SP:P01236, GB:U75583, PID:1620399, PID:1658518, PID:190354, PID:190356, PID:220018, PID:34211, PID:531101, and PID:531103; identified by sequence similarity; putative
YP_005108226.1	identified by match to TIGR protein family HMM TIGR01330
YP_005108227.1	similar to GP:15155658, and GP:15073740; identified by sequence similarity; putative
YP_005108228.1	similar to GP:14027592; identified by sequence similarity; putative
YP_005108229.1	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A
YP_005108230.1	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_005108231.1	similar to GP:15073746; identified by sequence similarity; putative
YP_005108232.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_005108233.1	similar to GB:Z25795, SP:P39118, PID:397488, PID:2293136, GB:AL009126, GB:Z25795, SP:P39118, PID:397488, PID:2293136, and GB:AL009126; identified by sequence similarity; putative
YP_005108234.1	similar to SP:P45857; identified by sequence similarity; putative
YP_005108235.1	identified by match to PFAM protein family HMM PF01614
YP_005108236.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_005108237.1	converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation
YP_005108238.1	similar to GP:14587414; identified by sequence similarity; putative
YP_005108239.1	identified by match to PFAM protein family HMM PF00376
YP_005108240.1	identified by match to TIGR protein family HMM TIGR01382
YP_005108241.1	similar to GP:15159266; identified by sequence similarity; putative
YP_005108245.1	identified by match to PFAM protein family HMM PF03929
YP_005108246.1	similar to SP:P41780; identified by sequence similarity; putative
YP_005108247.1	similar to GP:15073890; identified by sequence similarity; putative
YP_005108248.1	similar to GP:15159282; identified by sequence similarity; putative
YP_005108250.1	similar to GP:15140120; identified by sequence similarity; putative
YP_005108251.1	similar to GP:15140121; identified by sequence similarity; putative
YP_005108252.1	similar to GP:15140123; identified by sequence similarity; putative
YP_005108255.1	identified by match to PFAM protein family HMM PF03772
YP_005108256.1	similar to GP:6978955; identified by sequence similarity; putative
YP_005108257.1	similar to GP:6978956, and GP:6978956; identified by sequence similarity; putative
YP_005108258.1	similar to GP:6978957; identified by sequence similarity; putative
YP_005108259.1	similar to GP:6978958, and GP:6978958; identified by sequence similarity; putative
YP_005108260.1	similar to GP:6978959, and SP:Q51662; identified by sequence similarity; putative
YP_005108261.1	similar to GP:6978960, and SP:P98008; identified by sequence similarity; putative
YP_005108262.1	similar to GP:6978961, GB:U10072, SP:P98177, and PID:501087; identified by sequence similarity; putative
YP_005108263.1	similar to GP:6978962, GB:K00396, GB:M10065, GB:M12529, GB:X00199, GB:Z70760, GB:X92000, SP:P02649, PID:1263123, PID:178849, PID:178851, PID:178853, PID:579590, and PID:929610; identified by sequence similarity; putative
YP_005108264.1	similar to GP:14523804; identified by sequence similarity; putative
YP_005108265.1	similar to GP:14523803, and GP:14523803; identified by sequence similarity; putative
YP_005108266.1	similar to GP:14523802, and GP:14523802; identified by sequence similarity; putative
YP_005108267.1	similar to GP:14523801, and GP:14523801; identified by sequence similarity; putative
YP_005108268.1	similar to GP:15156967, and GP:15156967; identified by sequence similarity; putative
YP_005108269.1	similar to GP:15074522, and GP:15074522; identified by sequence similarity; putative
YP_005108270.1	identified by match to TIGR protein family HMM TIGR01409
YP_005108272.1	similar to GB:J05016, SP:P13667, PID:181508, GB:J05016, SP:P13667, and PID:181508; identified by sequence similarity; putative
YP_005108273.1	similar to GP:14523796, and GP:2773329; identified by sequence similarity; putative
YP_005108274.1	similar to GP:6978954; identified by sequence similarity; putative
YP_005108275.1	similar to GP:15140338; identified by sequence similarity; putative
YP_005108277.1	similar to GP:2661681; identified by sequence similarity; putative
YP_005108278.1	similar to GP:2661682, and GP:12659326; identified by sequence similarity; putative
YP_005108279.1	similar to GP:2661683, and GP:2661683; identified by sequence similarity; putative
YP_005108280.1	similar to GP:11036625, GB:M57506, GB:M57502, SP:P22362, PID:184506, and PID:339729; identified by sequence similarity; putative
YP_005108281.1	similar to GP:15158921; identified by sequence similarity; putative
YP_005108282.1	similar to GP:15158337, and GP:15158337; identified by sequence similarity; putative
YP_005108283.1	similar to SP:P08500, GB:M18576, PID:551957, PID:581499, SP:P08500, GB:M18576, PID:551957, and PID:581499; identified by sequence similarity; putative
YP_005108285.1	similar to GP:14523755; identified by sequence similarity; putative
YP_005108286.1	reduces nitrous oxide to nitrogen
YP_005108287.1	similar to SP:P19843, GB:X04803, SP:P02248, PID:1304128, PID:1490419, PID:340058, PID:340068, and PID:825728; identified by sequence similarity; putative
YP_005108288.1	similar to SP:P19844, GB:X04803, SP:P02248, PID:1304128, PID:1490419, PID:340058, PID:340068, and PID:825728; identified by sequence similarity; putative
YP_005108289.1	similar to GP:2177176, GB:L06175, and PID:189449; identified by sequence similarity; putative
YP_005108290.1	similar to GP:2177177; identified by sequence similarity; putative
YP_005108291.1	similar to GP:14523761, and GP:2177178; identified by sequence similarity; putative
YP_005108292.1	similar to GP:15158856, GB:L06214, PID:153222, and PID:886941; identified by sequence similarity; putative
YP_005108294.1	similar to GP:15158853, and GP:14523798; identified by sequence similarity; putative
YP_005108296.1	similar to GP:15158995; identified by sequence similarity; putative
YP_005108297.1	identified by match to TIGR protein family HMM TIGR00972
YP_005108300.1	similar to GP:15158836; identified by sequence similarity; putative
YP_005108301.1	similar to GP:15158837; identified by sequence similarity; putative
YP_005108302.1	similar to GP:15158838, and GP:15158838; identified by sequence similarity; putative
YP_005108303.1	similar to GP:14523816; identified by sequence similarity; putative
YP_005108304.1	catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate
YP_005108307.1	similar to GB:M64929, SP:Q00005, SP:Q00007, and PID:190422; identified by sequence similarity; putative
YP_005108308.1	similar to GP:11344603, GB:L08239, and PID:950412; identified by sequence similarity; putative
YP_005108309.1	similar to GB:D90359, GB:M73442, GB:M73444, GB:X07024, SP:P21675, and PID:29733; identified by sequence similarity; putative
YP_005108310.1	similar to SP:P09152; identified by sequence similarity; putative
YP_005108311.1	similar to GP:14348603; identified by sequence similarity; putative
YP_005108312.1	upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism
YP_005108313.1	similar to GP:5802909; identified by sequence similarity; putative
YP_005108315.1	similar to GP:5802910, and GP:2828820; identified by sequence similarity; putative
YP_005108316.1	similar to GP:5802911, and GP:2828821; identified by sequence similarity; putative
YP_005108317.1	similar to GP:5802912, and GP:13517311; identified by sequence similarity; putative
YP_005108318.1	similar to GP:5802913; identified by sequence similarity; putative
YP_005108319.1	similar to GP:5802914; identified by sequence similarity; putative
YP_005108320.1	similar to GP:5802915; identified by sequence similarity; putative
YP_005108322.1	similar to GP:15073164, and GP:12055084; identified by sequence similarity; putative
YP_005108325.1	similar to GP:1800061; identified by sequence similarity; putative
YP_005108326.1	in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF
YP_005108327.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_005108328.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_005108332.1	blocks the formation of polar Z-ring septums
YP_005108333.1	similar to GP:15160138, and SP:P18197; identified by sequence similarity; putative
YP_005108334.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_005108336.1	similar to GP:15159179, and GP:15159179; identified by sequence similarity; putative
YP_005108337.1	similar to GP:14524112, and GP:17428750; identified by sequence similarity; putative
YP_005108338.1	similar to GP:14524111; identified by sequence similarity; putative
YP_005108339.1	similar to GP:14524110, and SP:P23860; identified by sequence similarity; putative
YP_005108340.1	similar to GP:14524109, GB:X59932, SP:P41240, PID:30256, and PID:30315; identified by sequence similarity; putative
YP_005108345.1	similar to GP:15141215; identified by sequence similarity; putative
YP_005108346.1	similar to GP:14524048; identified by sequence similarity; putative
YP_005108349.1	catalyzes the formation of glutamate from glutamine
YP_005108350.1	inactive form
YP_005108353.1	similar to SP:P77473; identified by sequence similarity; putative
YP_005108355.1	identified by match to PFAM protein family HMM PF03466
YP_005108356.1	similar to GP:3510759; identified by sequence similarity; putative
YP_005108357.1	similar to GP:2738951, SP:P06187, GB:K03551, GB:X52093, PID:154137, and PID:47739; identified by sequence similarity; putative
YP_005108358.1	similar to GP:7799513, and GP:7799513; identified by sequence similarity; putative
YP_005108359.1	identified by match to PFAM protein family HMM PF03595
YP_005108361.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_005108362.1	similar to GP:15140396; identified by sequence similarity; putative
YP_005108363.1	similar to GP:4098965, and GP:4098965; identified by sequence similarity; putative
YP_005108364.1	similar to SP:Q59170, GB:L08666, SP:P45880, PID:190200, and PID:190201; identified by sequence similarity; putative
YP_005108365.1	similar to GP:9082308; identified by sequence similarity; putative
YP_005108366.1	identified by match to PFAM protein family HMM PF02600
YP_005108367.1	identified by match to TIGR protein family HMM TIGR00563
YP_005108368.1	identified by match to PFAM protein family HMM PF02584
YP_005108369.1	Enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_005108370.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_005108371.1	identified by match to PFAM protein family HMM PF00589
YP_005108372.1	similar to SP:P37447, GB:X76902, and PID:436890; identified by sequence similarity; putative
YP_005108373.1	similar to GP:8117186, and GP:8117186; identified by sequence similarity; putative
YP_005108375.1	similar to GB:X72841, SP:P31149, SP:Q09028, SP:Q16576, PID:1016273, and PID:297904; identified by sequence similarity; putative
YP_005108377.1	similar to SP:P03833, GB:X01007, GB:X13109, GB:X16345, GB:Y00525, PID:43821, SP:P03833, GB:X01007, GB:X13109, GB:X16345, GB:Y00525, and PID:43821; identified by sequence similarity; putative
YP_005108380.1	similar to GP:14523605, GB:L33243, GB:L43601, GB:L43602, GB:L43604, GB:L43605, GB:L43610, GB:L43617, GB:L43618, SP:P98161, PID:799335, PID:903758, and PID:904223; identified by sequence similarity; putative
YP_005108381.1	similar to SP:P17909; identified by sequence similarity; putative
YP_005108382.1	similar to GB:X62949, GB:L35249, SP:P15313, SP:P21281, PID:179563, PID:37794, PID:522193, PID:587442, GB:X62949, GB:L35249, SP:P15313, SP:P21281, PID:179563, PID:37794, PID:522193, and PID:587442; identified by sequence similarity; putative
YP_005108386.1	identified by match to TIGR protein family HMM TIGR00634
YP_005108388.1	similar to GB:M23326, GB:X15261, GB:X13954, PID:1049195, PID:2358067, PID:312412, PID:37046, PID:37048, PID:37298, PID:37324, and PID:540457; identified by sequence similarity; putative
YP_005108390.1	similar to GB:D14695, and PID:285961; identified by sequence similarity; putative
YP_005108391.1	similar to GB:M20730, SP:P16534, GB:M24197, PID:150496, and PID:150515; identified by sequence similarity; putative
YP_005108392.1	similar to GP:6469262, and GP:6469262; identified by sequence similarity; putative
YP_005108393.1	similar to SP:P35097, and GB:Z47792; identified by sequence similarity; putative
YP_005108394.1	similar to SP:Q9AEM9; identified by sequence similarity; putative
YP_005108395.1	Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation
YP_005108397.1	identified by match to PFAM protein family HMM PF00067
YP_005108398.1	similar to GP:14524114; identified by sequence similarity; putative
YP_005108400.1	identified by match to TIGR protein family HMM TIGR00692
YP_005108401.1	similar to SP:P04816, GB:L19201, SP:P32174, PID:304996, GB:U00096, and PID:1790325; identified by sequence similarity; putative
YP_005108402.1	similar to GP:19715091; identified by sequence similarity; putative
YP_005108403.1	similar to SP:P22731; identified by sequence similarity; putative
YP_005108404.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_005108405.1	identified by match to PFAM protein family HMM PF00745
YP_005108406.1	identified by match to PFAM protein family HMM PF00070
YP_005108407.1	similar to GP:15159844; identified by sequence similarity; putative
YP_005108408.1	similar to SP:P02917, GB:L19201, SP:P32174, PID:304996, GB:U00096, and PID:1790325; identified by sequence similarity; putative
YP_005108409.1	similar to GP:15075876; identified by sequence similarity; putative
YP_005108410.1	similar to SP:P49307; identified by sequence similarity; putative
YP_005108411.1	identified by match to PFAM protein family HMM PF01408
YP_005108412.1	similar to SP:P24137, GB:M88627, SP:P43334, and PID:476741; identified by sequence similarity; putative
YP_005108413.1	similar to GB:M88627, SP:P43334, and PID:476741; identified by sequence similarity; putative
YP_005108414.1	similar to GP:12541464; identified by sequence similarity; putative
YP_005108415.1	similar to GP:15160372; identified by sequence similarity; putative
YP_005108416.1	similar to GB:X07820, SP:P09238, and PID:36629; identified by sequence similarity; putative
YP_005108417.1	similar to GP:15158790, and GP:6969001; identified by sequence similarity; putative
YP_005108418.1	identified by match to PFAM protein family HMM PF00392
YP_005108419.1	identified by match to PFAM protein family HMM PF00218
YP_005108421.1	similar to GP:5478244, and GP:5478244; identified by sequence similarity; putative
YP_005108422.1	similar to GP:5478243, and GP:5478243; identified by sequence similarity; putative
YP_005108423.1	similar to GP:5478242, and GP:5478242; identified by sequence similarity; putative
YP_005108424.1	similar to GP:5478241, GP:5478241, GB:M83667, SP:P49716, and PID:189176; identified by sequence similarity; putative
YP_005108425.1	similar to GP:5478240; identified by sequence similarity; putative
YP_005108426.1	similar to GP:5478239, and SP:P15527; identified by sequence similarity; putative
YP_005108427.1	similar to GP:5478237, and GP:5478237; identified by sequence similarity; putative
YP_005108428.1	similar to GP:5478236, and GP:5478236; identified by sequence similarity; putative
YP_005108429.1	similar to GB:X70959, SP:P42459, PID:452384, GB:X70959, SP:P42459, and PID:452384; identified by sequence similarity; putative
YP_005108430.1	similar to GP:5478235; identified by sequence similarity; putative
YP_005108431.1	similar to GP:5478233, and GP:5478233; identified by sequence similarity; putative
YP_005108432.1	similar to GP:5478232; identified by sequence similarity; putative
YP_005108433.1	similar to GP:15158359, GB:J00109, GB:K03512, GB:M28637, GB:A15601, GB:K03513, GB:A11954, GB:X15943, SP:P01258, SP:P06881, PID:1340176, PID:179799, PID:179828, PID:180466, PID:296638, and PID:457134; identified by sequence similarity; putative
YP_005108434.1	similar to GP:15158365; identified by sequence similarity; putative
YP_005108435.1	similar to GP:15158366; identified by sequence similarity; putative
YP_005108436.1	similar to GP:15158364, and GP:15158364; identified by sequence similarity; putative
YP_005108437.1	similar to GP:15158361; identified by sequence similarity; putative
YP_005108438.1	catalyzes the formation of 5-aminovulinate from (S)-4-amino-5-oxopentanoate
YP_005108439.1	similar to GP:15158360, and GP:15158360; identified by sequence similarity; putative
YP_005108440.1	similar to GP:15158370; identified by sequence similarity; putative
YP_005108441.1	similar to GP:15158371, and GP:15158371; identified by sequence similarity; putative
YP_005108442.1	similar to SP:P29202, and PID:148782; identified by sequence similarity; putative
YP_005108443.1	similar to GP:15158375; identified by sequence similarity; putative
YP_005108444.1	similar to GP:15158376; identified by sequence similarity; putative
YP_005108445.1	similar to GP:15158377, and GP:6066675; identified by sequence similarity; putative
YP_005108447.1	similar to GP:15160336; identified by sequence similarity; putative
YP_005108448.1	similar to SP:O66131; identified by sequence similarity; putative
YP_005108449.1	identified by match to PFAM protein family HMM PF04024
YP_005108450.1	similar to GP:4106617; identified by sequence similarity; putative
YP_005108451.1	this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress
YP_005108452.1	similar to GP:15159873, and SP:P45857; identified by sequence similarity; putative
YP_005108453.1	similar to GB:X03342, SP:P02433, and PID:36132; identified by sequence similarity; putative
YP_005108454.1	similar to GP:9948613, GB:M29297, and SP:P20189; identified by sequence similarity; putative
YP_005108455.1	similar to GB:M25667, GB:S66533, GB:S66534, GB:S66541, SP:P17677, and PID:182970; identified by sequence similarity; putative
YP_005108456.1	similar to GP:14523919; identified by sequence similarity; putative
YP_005108458.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_005108459.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_005108460.1	similar to GB:Z29635, SP:P46374, PID:455002, GB:Z29635, SP:P46374, and PID:455002; identified by sequence similarity; putative
YP_005108461.1	identified by match to PFAM protein family HMM PF01022
YP_005108462.1	similar to GP:14523677, and GP:14523677; identified by sequence similarity; putative
YP_005108464.1	similar to GP:14524042; identified by sequence similarity; putative
YP_005108465.1	identified by match to PFAM protein family HMM PF01594
YP_005108467.1	identified by match to PFAM protein family HMM PF03130
YP_005108468.1	identified by match to TIGR protein family HMM TIGR00998
YP_005108469.1	similar to GP:17427173; identified by sequence similarity; putative
YP_005108470.1	similar to GP:15158870, and GP:15074195; identified by sequence similarity; putative
YP_005108471.1	similar to GP:13021750, and SP:Q47539; identified by sequence similarity; putative
YP_005108472.1	similar to SP:P37338, GB:U00096, and PID:1789018; identified by sequence similarity; putative
YP_005108473.1	identified by match to PFAM protein family HMM PF00497
YP_005108474.1	similar to GP:15074065; identified by sequence similarity; putative
YP_005108475.1	similar to GP:15156118; identified by sequence similarity; putative
YP_005108476.1	identified by match to TIGR protein family HMM TIGR01386
YP_005108477.1	similar to GP:14023190; identified by sequence similarity; putative
YP_005108481.1	similar to GP:14026911; identified by sequence similarity; putative
YP_005108483.1	similar to GP:15155841; identified by sequence similarity; putative
YP_005108484.1	similar to GP:15075862; identified by sequence similarity; putative
YP_005108486.1	similar to GP:15074955; identified by sequence similarity; putative
YP_005108488.1	catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis
YP_005108489.1	similar to GP:15140555; identified by sequence similarity; putative
YP_005108490.1	FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_005108491.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_005108492.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_005108493.1	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine
YP_005108494.1	similar to GB:L05091, GB:U58682, SP:P25112, PID:1518637, and PID:337403; identified by sequence similarity; putative
YP_005108498.1	forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis
YP_005108501.1	identified by match to PFAM protein family HMM PF00070
YP_005108502.1	subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+
YP_005108503.1	subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_005108504.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone
YP_005108505.1	subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_005108506.1	subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_005108507.1	subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_005108509.1	similar to GP:15159185, GB:Z27502, GB:Z29983, SP:P04438, PID:1335182, PID:32878, PID:474960, PID:505435, and PID:563647; identified by sequence similarity; putative
YP_005108510.1	similar to GP:9858820, GB:M24400, SP:P17538, and PID:181190; identified by sequence similarity; putative
YP_005108511.1	similar to GP:9858821; identified by sequence similarity; putative
YP_005108512.1	similar to GP:9858822, and SP:P11026; identified by sequence similarity; putative
YP_005108513.1	similar to GB:X59066, GB:X65460, GB:D28126, GB:D14710, SP:P25705, PID:28938, PID:34468, PID:559317, and PID:559325; identified by sequence similarity; putative
YP_005108514.1	similar to SP:P30858, GB:X86160, PID:769790, GB:U00096, PID:1651397, and PID:1787089; identified by sequence similarity; putative
YP_005108515.1	similar to GP:15073129; identified by sequence similarity; putative
YP_005108516.1	similar to GP:15073128, and GP:15073128; identified by sequence similarity; putative
YP_005108518.1	similar to GP:15073126, and SP:Q00749; identified by sequence similarity; putative
YP_005108520.1	similar to GP:15073125, and SP:P29823; identified by sequence similarity; putative
YP_005108521.1	similar to GP:15073124; identified by sequence similarity; putative
YP_005108522.1	similar to GP:15073123; identified by sequence similarity; putative
YP_005108523.1	similar to GP:15073122, and SP:Q01937; identified by sequence similarity; putative
YP_005108525.1	similar to GP:15075957, and SP:P09060; identified by sequence similarity; putative
YP_005108526.1	identified by match to PFAM protein family HMM PF02780
YP_005108527.1	Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA
YP_005108528.1	E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_005108529.1	identified by match to PFAM protein family HMM PF02104
YP_005108531.1	similar to GB:L07807, GB:L07810, GB:L07808, GB:L07809, SP:Q05193, PID:181849, and PID:181851; identified by sequence similarity; putative
YP_005108532.1	identified by match to PFAM protein family HMM PF03576
YP_005108533.1	similar to GP:15157414; identified by sequence similarity; putative
YP_005108534.1	similar to GB:J05175, SP:P16442, PID:1783208, PID:1783212, PID:1783214, PID:1783218, PID:1783226, PID:2352626, PID:340078, and PID:992596; identified by sequence similarity; putative
YP_005108535.1	similar to GP:15158999; identified by sequence similarity; putative
YP_005108536.1	similar to GP:15140749; identified by sequence similarity; putative
YP_005108537.1	similar to GP:15158997, and SP:P24138; identified by sequence similarity; putative
YP_005108538.1	similar to GP:13235555, and SP:P77348; identified by sequence similarity; putative
YP_005108539.1	similar to GP:15158996, and SP:P06202; identified by sequence similarity; putative
YP_005108541.1	similar to GP:15074850; identified by sequence similarity; putative
YP_005108543.1	similar to GP:15140313; identified by sequence similarity; putative
YP_005108544.1	similar to SP:P23157, GB:X55942, and PID:46921; identified by sequence similarity; putative
YP_005108545.1	similar to GP:15140315; identified by sequence similarity; putative
YP_005108546.1	identified by match to TIGR protein family HMM TIGR00745
YP_005108547.1	similar to GP:15140316, and GP:15140316; identified by sequence similarity; putative
YP_005108548.1	similar to GP:15140317; identified by sequence similarity; putative
YP_005108549.1	similar to GP:15140318, and GP:15140318; identified by sequence similarity; putative
YP_005108550.1	similar to GP:15160059; identified by sequence similarity; putative
YP_005108551.1	identified by match to PFAM protein family HMM PF00165
YP_005108552.1	similar to GB:X07282, SP:P10826, PID:184477, PID:32026, PID:35883, GB:D38554, PID:1354931, and PID:559705; identified by sequence similarity; putative
YP_005108553.1	identified by match to PFAM protein family HMM PF02566
YP_005108554.1	similar to SP:P14040, GB:X15970, and PID:44784; identified by sequence similarity; putative
YP_005108555.1	similar to GP:15140549, SP:P37811, GB:Z28592, PID:433988, and GB:AL009126; identified by sequence similarity; putative
YP_005108556.1	similar to GP:15076151, SP:P37811, GB:Z28592, PID:433988, and GB:AL009126; identified by sequence similarity; putative
YP_005108557.1	similar to GP:15076150, and GP:15076150; identified by sequence similarity; putative
YP_005108560.1	identified by match to TIGR protein family HMM TIGR00011
YP_005108561.1	rhizobial iron regulator; in Sinorhizobium meliloti mutations in this gene affect the expression of a number of iron-responsive operons
YP_005108562.1	similar to GP:13277326, and GP:13277326; identified by sequence similarity; putative
YP_005108563.1	similar to GP:15076196; identified by sequence similarity; putative
YP_005108564.1	similar to SP:P22759; identified by sequence similarity; putative
YP_005108565.1	identified by match to PFAM protein family HMM PF00919
YP_005108566.1	similar to GP:15156897; identified by sequence similarity; putative
YP_005108567.1	similar to GP:15156898; identified by sequence similarity; putative
YP_005108568.1	similar to GP:13937515; identified by sequence similarity; putative
YP_005108569.1	similar to GP:13937516; identified by sequence similarity; putative
YP_005108570.1	similar to GP:15074605; identified by sequence similarity; putative
YP_005108571.1	similar to GP:6739568; identified by sequence similarity; putative
YP_005108572.1	similar to SP:P25534; identified by sequence similarity; putative
YP_005108573.1	similar to GP:15074574; identified by sequence similarity; putative
YP_005108574.1	similar to GP:14021474; identified by sequence similarity; putative
YP_005108575.1	similar to GP:15074576; identified by sequence similarity; putative
YP_005108576.1	identified by match to PFAM protein family HMM PF03046
YP_005108577.1	identified by match to PFAM protein family HMM PF00903
YP_005108578.1	identified by match to TIGR protein family HMM TIGR01587
YP_005108579.1	similar to GP:15074586, and GP:15074586; identified by sequence similarity; putative
YP_005108580.1	catalyzes branch migration in Holliday junction intermediates
YP_005108581.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_005108582.1	similar to GB:K03195, SP:P11166, and PID:183303; identified by sequence similarity; putative
YP_005108583.1	similar to GP:6714962; identified by sequence similarity; putative
YP_005108584.1	similar to GP:15074112; identified by sequence similarity; putative
YP_005108585.1	similar to GP:15157711, and GP:1196970; identified by sequence similarity; putative
YP_005108586.1	similar to GP:3236220; identified by sequence similarity; putative
YP_005108587.1	identified by match to PFAM protein family HMM PF00989
YP_005108588.1	lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism
YP_005108589.1	similar to GP:15156645; identified by sequence similarity; putative
YP_005108590.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_005108593.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_005108594.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_005108595.1	catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins
YP_005108596.1	similar to GP:15156369, and GP:15074241; identified by sequence similarity; putative
YP_005108597.1	identified by match to PFAM protein family HMM PF02771
YP_005108598.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_005108599.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_005108600.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_005108601.1	similar to GP:15156358; identified by sequence similarity; putative
YP_005108603.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_005108604.1	similar to SP:P21499; identified by sequence similarity; putative
YP_005108606.1	similar to GP:6525218; identified by sequence similarity; putative
YP_005108607.1	similar to GP:6525219; identified by sequence similarity; putative
YP_005108608.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_005108609.1	involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP
YP_005108611.1	similar to GP:6513589; identified by sequence similarity; putative
YP_005108612.1	similar to GP:15074224; identified by sequence similarity; putative
YP_005108613.1	Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation
YP_005108614.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_005108615.1	similar to GP:15156313, and GP:15074191; identified by sequence similarity; putative
YP_005108617.1	identified by match to TIGR protein family HMM TIGR00254
YP_005108620.1	similar to SP:P09795, and PID:154350; identified by sequence similarity; putative
YP_005108624.1	identified by match to TIGR protein family HMM TIGR01406
YP_005108625.1	similar to GP:15074546, and GP:15074546; identified by sequence similarity; putative
YP_005108626.1	identified by match to PFAM protein family HMM PF00165
YP_005108628.1	similar to GP:15073672, and SP:Q98B75; identified by sequence similarity; putative
YP_005108629.1	similar to SP:P33548, PID:155324, and PID:155328; identified by sequence similarity; putative
YP_005108630.1	similar to SP:P33548, PID:155324, and PID:155328; identified by sequence similarity; putative
YP_005108631.1	identified by match to PFAM protein family HMM PF00899
YP_005108632.1	identified by match to PFAM protein family HMM PF01047
YP_005108633.1	identified by match to TIGR protein family HMM TIGR01409
YP_005108634.1	catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA
YP_005108635.1	similar to GP:15158666, and SP:Q01104; identified by sequence similarity; putative
YP_005108636.1	similar to GP:15158667, and SP:Q01103; identified by sequence similarity; putative
YP_005108637.1	similar to GP:15141386; identified by sequence similarity; putative
YP_005108638.1	similar to GP:6682325; identified by sequence similarity; putative
YP_005108639.1	catalyzes the formation of protocatechuate from 4-hydroxybenzoate
YP_005108640.1	similar to GP:15141380, GB:D21235, SP:P54725, PID:1905912, and PID:498146; identified by sequence similarity; putative
YP_005108641.1	similar to GP:15141379, and SP:P00632; identified by sequence similarity; putative
YP_005108642.1	similar to GP:15141378; identified by sequence similarity; putative
YP_005108643.1	similar to GP:11037223, and SP:P00437; identified by sequence similarity; putative
YP_005108644.1	similar to GP:11037224, GB:M12783, GB:X02811, GB:M19719, GB:X03702, GB:K01918, GB:X03493, GB:Y00389, GB:K01402, GB:X02745, GB:K01399, GB:X00560, GB:K01915, GB:K01917, GB:K01401, GB:X00562, GB:K01916, GB:K01400, GB:X00561, GB:K01913, GB:K01914, GB:J00121, GB:K01398, GB:X02744, GB:M32009, SP:P01127, PID:1335308, PID:1335309, PID:1335310, PID:1335311, PID:1621242, PID:1888419, PID:2294400, PID:2294421, PID:2294425, PID:2297379, PID:30247, PID:338199, PID:338209, PID:338211, PID:35372, PID:35375, PID:35377, PID:36481, and PID:951025; identified by sequence similarity; putative
YP_005108645.1	Catalyzes the cycloisomerization of cis,cis-muconate
YP_005108646.1	similar to GP:15158698; identified by sequence similarity; putative
YP_005108647.1	similar to GP:15158699; identified by sequence similarity; putative
YP_005108648.1	similar to GP:15158700; identified by sequence similarity; putative
YP_005108649.1	similar to GP:15158701; identified by sequence similarity; putative
YP_005108650.1	similar to GP:15158702; identified by sequence similarity; putative
YP_005108651.1	similar to GB:Y00636, GB:X06296, SP:P19256, PID:34347, PID:34350, and PID:540515; identified by sequence similarity; putative
YP_005108652.1	similar to GP:15157708; identified by sequence similarity; putative
YP_005108653.1	similar to GP:15140275, and GP:43244; identified by sequence similarity; putative
YP_005108654.1	similar to GP:15140276; identified by sequence similarity; putative
YP_005108655.1	similar to GP:15160208; identified by sequence similarity; putative
YP_005108656.1	part of the UgpABCE glycerol-3-phosphate uptake system
YP_005108657.1	similar to GP:15075030; identified by sequence similarity; putative
YP_005108658.1	similar to GP:15074401; identified by sequence similarity; putative
YP_005108659.1	similar to GP:15140670; identified by sequence similarity; putative
YP_005108662.1	similar to GP:15073153; identified by sequence similarity; putative
YP_005108663.1	similar to GP:15156879; identified by sequence similarity; putative
YP_005108665.1	identified by match to PFAM protein family HMM PF03647
YP_005108666.1	proposed role in polysaccahride synthesis
YP_005108668.1	similar to GP:15075528; identified by sequence similarity; putative
YP_005108670.1	similar to GP:15157658, and SP:P15028; identified by sequence similarity; putative
YP_005108671.1	similar to GP:15157659, and SP:P37738; identified by sequence similarity; putative
YP_005108672.1	similar to GP:15157660, and SP:P37737; identified by sequence similarity; putative
YP_005108673.1	similar to GP:15157661, and GP:15023678; identified by sequence similarity; putative
YP_005108674.1	similar to GP:14023727; identified by sequence similarity; putative
YP_005108676.1	similar to GP:15139898; identified by sequence similarity; putative
YP_005108677.1	similar to GP:15076300; identified by sequence similarity; putative
YP_005108678.1	similar to GP:15076302; identified by sequence similarity; putative
YP_005108679.1	similar to GP:15076303, GB:J00128, GB:M58569, GB:M64982, GB:J00127, GB:K02272, GB:M26878, SP:P02671, GB:S82092, PID:182407, PID:182424, PID:182426, PID:182428, PID:458554, PID:458555, GB:J00128, GB:M58569, GB:M64982, GB:J00127, GB:K02272, GB:M26878, SP:P02671, GB:S82092, PID:182407, PID:182424, PID:182426, PID:182428, PID:458554, PID:458555, GB:J00128, GB:M58569, GB:M64982, GB:J00127, GB:K02272, GB:M26878, SP:P02671, GB:S82092, PID:182407, PID:182424, PID:182426, PID:182428, PID:458554, and PID:458555; identified by sequence similarity; putative
YP_005108680.1	identified by match to TIGR protein family HMM TIGR01622
YP_005108681.1	identified by match to TIGR protein family HMM TIGR00438
YP_005108682.1	identified by match to TIGR protein family HMM TIGR00897
YP_005108685.1	similar to GP:15076325; identified by sequence similarity; putative
YP_005108686.1	similar to GP:13936895, and GP:2828821; identified by sequence similarity; putative
YP_005108687.1	similar to GP:9964068, GB:L19113, SP:P39143, PID:437318, and GB:AL009126; identified by sequence similarity; putative
YP_005108689.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_005108690.1	identified by match to TIGR protein family HMM TIGR01244
YP_005108692.1	similar to GP:15155325, and SP:P71338; identified by sequence similarity; putative
YP_005108693.1	similar to GP:15155324, and SP:P35755; identified by sequence similarity; putative
YP_005108694.1	similar to GP:15155323; identified by sequence similarity; putative
YP_005108695.1	similar to GP:15075956; identified by sequence similarity; putative
YP_005108696.1	similar to GB:M92844, GB:M63625, GB:M92843, SP:P26651, PID:183443, PID:183445, PID:340013, SP:P20922, and PID:581487; identified by sequence similarity; putative
YP_005108697.1	laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification
YP_005108699.1	similar to GP:15075195; identified by sequence similarity; putative
YP_005108700.1	similar to GP:12620484; identified by sequence similarity; putative
YP_005108701.1	similar to GP:12620485, and GP:12620485; identified by sequence similarity; putative
YP_005108702.1	similar to GB:L04510, SP:P36406, and PID:292070; identified by sequence similarity; putative
YP_005108703.1	similar to GP:15159268, SP:P07002, GB:X66086, PID:42457, GB:U00096, PID:1742636, PID:1742642, PID:1742653, and PID:1787886; identified by sequence similarity; putative
YP_005108704.1	similar to GP:15159273, and SP:O68965; identified by sequence similarity; putative
YP_005108705.1	similar to GP:15158705; identified by sequence similarity; putative
YP_005108706.1	similar to GP:15158707, and GP:7209271; identified by sequence similarity; putative
YP_005108707.1	similar to GP:15158708; identified by sequence similarity; putative
YP_005108708.1	similar to GP:15140221, GB:X56692, GB:M11725, GB:M11880, GB:M35163, SP:P02741, PID:181066, PID:181068, PID:181073, and PID:30213; identified by sequence similarity; putative
YP_005108709.1	similar to GP:15140222; identified by sequence similarity; putative
YP_005108710.1	similar to GP:15158391, and GP:17743296; identified by sequence similarity; putative
YP_005108711.1	similar to GP:15140224; identified by sequence similarity; putative
YP_005108714.1	similar to GB:M64551, SP:P26514, PID:153527, GB:M64551, SP:P26514, and PID:153527; identified by sequence similarity; putative
YP_005108716.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_005108717.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_005108718.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_005108719.1	similar to GP:15074478; identified by sequence similarity; putative
YP_005108720.1	identified by match to TIGR protein family HMM TIGR01424
YP_005108721.1	similar to GP:15024826; identified by sequence similarity; putative
YP_005108723.1	identified by match to PFAM protein family HMM PF00120
YP_005108725.1	similar to GB:M33308, SP:P18206, PID:292902, and PID:340237; identified by sequence similarity; putative
YP_005108726.1	similar to GP:3236220, and GP:3236220; identified by sequence similarity; putative
YP_005108728.1	similar to GP:15075527; identified by sequence similarity; putative
YP_005108729.1	similar to GP:19747452; identified by sequence similarity; putative
YP_005108730.1	similar to GP:6119662, and GP:6119854; identified by sequence similarity; putative
YP_005108731.1	similar to SP:P46920, GB:M88282, SP:P40200, and PID:338672; identified by sequence similarity; putative
YP_005108734.1	similar to GP:15140598; identified by sequence similarity; putative
YP_005108735.1	identified by match to TIGR protein family HMM TIGR00441
YP_005108736.1	similar to SP:P55604; identified by sequence similarity; putative
YP_005108737.1	similar to GP:14024269; identified by sequence similarity; putative
YP_005108739.1	similar to GP:2828820; identified by sequence similarity; putative
YP_005108740.1	similar to GP:2828821; identified by sequence similarity; putative
YP_005108741.1	identified by match to TIGR protein family HMM TIGR00969
YP_005108742.1	identified by match to TIGR protein family HMM TIGR00004
YP_005108745.1	similar to GP:15139930, and GP:8217385; identified by sequence similarity; putative
YP_005108746.1	similar to GP:15139929; identified by sequence similarity; putative
YP_005108747.1	similar to GP:15159961, and GP:8546929; identified by sequence similarity; putative
YP_005108749.1	similar to GP:15162366; identified by sequence similarity; putative
YP_005108750.1	similar to GB:M23114, GB:M23116, GB:M23278, GB:M23115, SP:P16614, SP:P16615, PID:306850, PID:306851, PID:567108, GB:M23114, GB:M23116, GB:M23278, GB:M23115, SP:P16614, SP:P16615, PID:306850, PID:306851, and PID:567108; identified by sequence similarity; putative
YP_005108751.1	similar to GP:15162367; identified by sequence similarity; putative
YP_005108752.1	similar to GP:15074064; identified by sequence similarity; putative
YP_005108753.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_005108754.1	identified by match to TIGR protein family HMM TIGR01436
YP_005108755.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_005108756.1	identified by match to PFAM protein family HMM PF00126
YP_005108759.1	identified by match to PFAM protein family HMM PF00120
YP_005108760.1	crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown
YP_005108761.1	similar to SP:Q9Z3S3; identified by sequence similarity; putative
YP_005108762.1	identified by match to PFAM protein family HMM PF01047
YP_005108764.1	identified by match to PFAM protein family HMM PF01037
YP_005108765.1	similar to SP:O07942; identified by sequence similarity; putative
YP_005108767.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_005108768.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_005108769.1	catalyzes the formation of 6-phospho-D-gluconate from 6-phospho-D-glucono-1,5-lactone
YP_005108770.1	identified by match to PFAM protein family HMM PF00763
YP_005108771.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_005108772.1	similar to SP:Q53192; identified by sequence similarity; putative
YP_005108773.1	similar to SP:Q53191; identified by sequence similarity; putative
YP_005108774.1	similar to GP:17741829; identified by sequence similarity; putative
YP_005108775.1	similar to GP:15141400, and GP:15141400; identified by sequence similarity; putative
YP_005108776.1	similar to GP:14277936; identified by sequence similarity; putative
YP_005108777.1	identified by match to PFAM protein family HMM PF03794
YP_005108778.1	class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine
YP_005108779.1	similar to GP:14025443; identified by sequence similarity; putative
YP_005108780.1	similar to GP:15155410; identified by sequence similarity; putative
YP_005108781.1	similar to GB:X65488, SP:Q00839, PID:32358, and PID:532037; identified by sequence similarity; putative
YP_005108782.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_005108783.1	identified by match to PFAM protein family HMM PF02771
YP_005108786.1	identified by match to PFAM protein family HMM PF02771
YP_005108787.1	with NikABCD is involved with nickel transport into the cell
YP_005108788.1	with NikABCE is involved in nickel transport into the cell
YP_005108789.1	with NikABDE is involved in nickel transport into the cell
YP_005108790.1	with NikACDE is involved in nickel transport into the cell
YP_005108791.1	similar to GP:12331180, and GP:12331180; identified by sequence similarity; putative
YP_005108792.1	Inhibits transcription at high concentrations of nickel
YP_005108793.1	similar to GP:15158051, GB:M25393, SP:P17706, and PID:804750; identified by sequence similarity; putative
YP_005108794.1	similar to GB:U12770, GB:U12774, GB:U12775, GB:L37019, SP:P42127, PID:540073, and PID:608648; identified by sequence similarity; putative
YP_005108795.1	similar to GP:9501758; identified by sequence similarity; putative
YP_005108796.1	identified by match to TIGR protein family HMM TIGR01409
YP_005108797.1	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism
YP_005108798.1	identified by match to PFAM protein family HMM PF00392
YP_005108799.1	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate
YP_005108800.1	identified by match to TIGR protein family HMM TIGR00998
YP_005108801.1	similar to GP:15074323; identified by sequence similarity; putative
YP_005108802.1	similar to GP:15074323; identified by sequence similarity; putative
YP_005108803.1	identified by match to PFAM protein family HMM PF02641
YP_005108804.1	identified by match to PFAM protein family HMM PF00376
YP_005108806.1	identified by match to PFAM protein family HMM PF04012
YP_005108807.1	similar to GP:14025434, and GP:14025434; identified by sequence similarity; putative
YP_005108809.1	identified by match to TIGR protein family HMM TIGR00024
YP_005108810.1	similar to GP:14025425; identified by sequence similarity; putative
YP_005108812.1	similar to GP:15073435; identified by sequence similarity; putative
YP_005108815.1	similar to GP:15155334, and GP:15073434; identified by sequence similarity; putative
YP_005108820.1	similar to GP:7630140; identified by sequence similarity; putative
YP_005108823.1	identified by match to PFAM protein family HMM PF01420
YP_005108824.1	identified by match to PFAM protein family HMM PF01170
YP_005108825.1	identified by match to PFAM protein family HMM PF03809
YP_005108826.1	identified by match to PFAM protein family HMM PF03726
YP_005108827.1	identified by match to PFAM protein family HMM PF01863
YP_005108828.1	similar to GP:6900910, GB:J00153, GB:V00491, GB:V00492, GB:J00157, GB:M22814, SP:P01922, PID:1335076, PID:1340147, PID:1340148, PID:1817577, PID:1817578, PID:183801, PID:183805, PID:28547, PID:28558, PID:386764, PID:386765, PID:537333, GB:J00153, GB:V00516, GB:V00493, GB:V00488, GB:V00489, GB:M24793, GB:M22814, SP:P01922, PID:1335076, PID:1340147, PID:1340148, PID:1817577, PID:1817578, PID:183801, PID:183805, PID:28547, PID:28558, PID:386764, PID:386765, and PID:537333; identified by sequence similarity; putative
YP_005108830.1	similar to GB:X07282, SP:P10826, PID:184477, PID:32026, PID:35883, GB:D38554, PID:1354931, and PID:559705; identified by sequence similarity; putative
YP_005108831.1	similar to PIR:PN0685, GB:X07282, SP:P10826, PID:184477, PID:32026, and PID:35883; identified by sequence similarity; putative
YP_005108834.1	identified by match to PFAM protein family HMM PF03788
YP_005108835.1	identified by match to PFAM protein family HMM PF03819
YP_005108836.1	identified by match to TIGR protein family HMM TIGR01472
YP_005108837.1	identified by match to PFAM protein family HMM PF00893
YP_005108838.1	identified by match to TIGR protein family HMM TIGR01668
YP_005108840.1	identified by match to PFAM protein family HMM PF00455
YP_005108842.1	similar to GP:15140211; identified by sequence similarity; putative
YP_005108843.1	identified by match to TIGR protein family HMM TIGR00972
YP_005108844.1	similar to GP:15140209, and GP:15140209; identified by sequence similarity; putative
YP_005108847.1	similar to GP:4204896, and GP:4204896; identified by sequence similarity; putative
YP_005108848.1	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane
YP_005108849.1	similar to GP:4204898, and GP:4204898; identified by sequence similarity; putative
YP_005108850.1	similar to GP:4204899, and GP:4204899; identified by sequence similarity; putative
YP_005108851.1	similar to GP:4204900; identified by sequence similarity; putative
YP_005108852.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_005108853.1	catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity
YP_005108854.1	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis
YP_005108855.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_005108857.1	similar to GP:15073394, and GP:15073394; identified by sequence similarity; putative
YP_005108858.1	similar to GP:15076115; identified by sequence similarity; putative
YP_005108859.1	similar to GP:17134323; identified by sequence similarity; putative
YP_005108861.1	similar to SP:P24171; identified by sequence similarity; putative
YP_005108862.1	identified by match to PFAM protein family HMM PF00903
YP_005108863.1	similar to GP:15076201, and GP:15076201; identified by sequence similarity; putative
YP_005108865.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_005108866.1	similar to GP:15076200; identified by sequence similarity; putative
YP_005108867.1	similar to GP:15073893, and SP:O68390; identified by sequence similarity; putative
YP_005108868.1	similar to GP:14456720; identified by sequence similarity; putative
YP_005108869.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_005108870.1	similar to GP:15157678; identified by sequence similarity; putative
YP_005108871.1	similar to GP:15073366; identified by sequence similarity; putative
YP_005108872.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_005108873.1	identified by match to PFAM protein family HMM PF03966
YP_005108874.1	similar to GP:14024485; identified by sequence similarity; putative
YP_005108875.1	identified by match to PFAM protein family HMM PF03745
YP_005108879.1	similar to GP:15155141; identified by sequence similarity; putative
YP_005108880.1	catalyzes the formation of L-proline from L-ornithine
YP_005108881.1	similar to SP:P10366, GB:U02070, GB:X63697, PID:41022, PID:41708, PID:509817, GB:U00096, PID:1736697, and PID:1788330; identified by sequence similarity; putative
YP_005108882.1	identified by match to PFAM protein family HMM PF02954
YP_005108883.1	similar to GP:15074497; identified by sequence similarity; putative
YP_005108884.1	similar to GP:15074498; identified by sequence similarity; putative
YP_005108885.1	similar to SP:P26606, GB:D11109, PID:216433, PID:466645, GB:U00096, and PID:1789924; identified by sequence similarity; putative
YP_005108886.1	similar to GP:15157750; identified by sequence similarity; putative
YP_005108887.1	similar to GP:15076313; identified by sequence similarity; putative
YP_005108888.1	similar to GP:15076314, and GP:15076314; identified by sequence similarity; putative
YP_005108889.1	similar to GP:15076316; identified by sequence similarity; putative
YP_005108890.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_005108891.1	identified by match to PFAM protein family HMM PF01380
YP_005108892.1	similar to GB:X56652, GB:L05921, GB:M10906, GB:M23698, GB:X51443, SP:P02735, PID:36308, PID:36317, PID:758679, PID:758681, PID:758683, PID:825714, PID:825715, PID:825716, PID:825717, and PID:939926; identified by sequence similarity; putative
YP_005108893.1	similar to SP:Q9V249; identified by sequence similarity; putative
YP_005108894.1	similar to GP:15073129; identified by sequence similarity; putative
YP_005108895.1	similar to GP:17984539; identified by sequence similarity; putative
YP_005108896.1	identified by match to TIGR protein family HMM TIGR00998
YP_005108897.1	identified by match to TIGR protein family HMM TIGR00998
YP_005108899.1	similar to GP:15156636, and GP:15156636; identified by sequence similarity; putative
YP_005108900.1	similar to GP:15156635; identified by sequence similarity; putative
YP_005108901.1	similar to GP:15141030; identified by sequence similarity; putative
YP_005108902.1	similar to GP:15075757, and GP:17742129; identified by sequence similarity; putative
YP_005108903.1	similar to GP:5805087, and GP:5805087; identified by sequence similarity; putative
YP_005108904.1	identified by match to PFAM protein family HMM PF00842
YP_005108905.1	catalyzes the oxidative deamination of D-amino acids
YP_005108906.1	similar to GP:15076318; identified by sequence similarity; putative
YP_005108907.1	catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate
YP_005108908.1	similar to SP:P22773; identified by sequence similarity; putative
YP_005108909.1	catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glu
YP_005108910.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_005108911.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_005108912.1	similar to GP:15159359; identified by sequence similarity; putative
YP_005108913.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_005108914.1	similar to GP:15075729, and GP:15075729; identified by sequence similarity; putative
YP_005108915.1	catalyzes the transamination of D-amino acids and their alpha-keto acids
YP_005108916.1	similar to GB:M33819; identified by sequence similarity; putative
YP_005108917.1	similar to GP:15485215; identified by sequence similarity; putative
YP_005108918.1	similar to GB:D14697, GB:J05262, GB:M29863, SP:P14324, PID:182399, PID:182405, PID:285965, and PID:285965; identified by sequence similarity; putative
YP_005108919.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism
YP_005108920.1	similar to GP:15155670, GB:M38180, GB:X55997, GB:M27137, SP:P14060, SP:P26439, PID:177191, PID:177196, PID:179468, PID:23862, PID:287844, and PID:306889; identified by sequence similarity; putative
YP_005108921.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_005108922.1	similar to GP:15156146, GB:L09118, GB:L23205, SP:Q05940, PID:1220370, PID:1770738, PID:292335, PID:296189, and PID:349712; identified by sequence similarity; putative
YP_005108925.1	catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit
YP_005108927.1	intracellular enzymes acting on low molecular weight D-amino acid amides, esters and oligopeptides containing D-amino acids; these proteases release the N-terminal D-amino acid from a peptide, and show higher affinity for D-Ala, D-Ser or D-Thr; no preference for the stereochemistry of the second amino acid
YP_005108928.1	similar to GP:15075720, and SP:P45766; identified by sequence similarity; putative
YP_005108929.1	annotated by RAST server; similar to GI:23464322
YP_005108931.1	similar to GP:15075718; identified by sequence similarity; putative
YP_005108932.1	similar to GP:15075996; identified by sequence similarity; putative
YP_005108933.1	similar to GP:15159145, and GP:15075607; identified by sequence similarity; putative
YP_005108934.1	similar to GP:15159144; identified by sequence similarity; putative
YP_005108935.1	similar to GP:15075999, and SP:P22731; identified by sequence similarity; putative
YP_005108936.1	similar to GP:15076000; identified by sequence similarity; putative
YP_005108937.1	similar to GP:15159141; identified by sequence similarity; putative
YP_005108938.1	similar to GP:15076002; identified by sequence similarity; putative
YP_005108940.1	identified by match to PFAM protein family HMM PF03734
YP_005108941.1	identified by match to TIGR protein family HMM TIGR00972
YP_005108942.1	identified by match to TIGR protein family HMM TIGR01594
YP_005108943.1	identified by match to PFAM protein family HMM PF00903
YP_005108944.1	similar to GP:15075882; identified by sequence similarity; putative
YP_005108946.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_005108947.1	similar to GP:15156967, and GP:15156967; identified by sequence similarity; putative
YP_005108948.1	similar to GB:X60708, GB:U13710, GB:U13711, GB:U13712, GB:U13713, GB:U13714, GB:U13715, GB:U13716, GB:U13717, GB:U13718, GB:U13719, GB:U13720, GB:U13721, GB:U13722, GB:U13723, GB:U13724, GB:U13725, GB:U13726, GB:U13727, GB:U13728, GB:U13729, GB:U13730, GB:U13731, GB:U13732, GB:U13733, GB:U13734, GB:U13735, GB:S79876, SP:P27487, PID:180083, PID:181570, PID:35336, and PID:535388; identified by sequence similarity; putative
YP_005108949.1	identified by match to TIGR protein family HMM TIGR01662
YP_005108950.1	identified by match to PFAM protein family HMM PF03447
YP_005108951.1	similar to GP:15075885, GB:M64979, GB:L14754, GB:L24544, SP:P38935, PID:401776, and PID:908917; identified by sequence similarity; putative
YP_005108952.1	similar to GP:15075886, GB:V00497, GB:M25113, GB:U01317, GB:M36640, GB:M25660, GB:A01592, GB:A18171, GB:M11428, GB:M25079, GB:V00500, GB:L48213, GB:U20223, GB:V00499, GB:V00498, SP:P02023, SP:P02042, PID:1066755, PID:1066758, PID:1066761, PID:1066764, PID:1066767, PID:1066770, PID:1066773, PID:1066776, PID:1066779, and PID:455998; identified by sequence similarity; putative
YP_005108953.1	similar to GB:X70218, SP:P33172, and PID:312814; identified by sequence similarity; putative
YP_005108954.1	similar to GP:15075888, and GP:15075888; identified by sequence similarity; putative
YP_005108958.1	identified by match to TIGR protein family HMM TIGR00254
YP_005108960.1	similar to GP:12698385, GB:M62800, GB:U01882, SP:P19474, PID:337485, PID:338490, PID:665918, and PID:747927; identified by sequence similarity; putative
YP_005108961.1	identified by match to PFAM protein family HMM PF00117
YP_005108962.1	Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor
YP_005108963.1	identified by match to TIGR protein family HMM TIGR01481
YP_005108964.1	similar to GP:15075894, GB:X74863, SP:P52954, PID:1617116, and PID:510998; identified by sequence similarity; putative
YP_005108965.1	similar to GP:15075895; identified by sequence similarity; putative
YP_005108966.1	identified by match to PFAM protein family HMM PF00400
YP_005108967.1	similar to GP:15075513, and GP:15075513; identified by sequence similarity; putative
YP_005108968.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_005108969.1	in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme
YP_005108970.1	identified by match to TIGR protein family HMM TIGR00004
YP_005108971.1	similar to GP:15139890; identified by sequence similarity; putative
YP_005108972.1	similar to SP:P04984; identified by sequence similarity; putative
YP_005108973.1	identified by match to TIGR protein family HMM TIGR00955
YP_005108974.1	similar to GP:15139893; identified by sequence similarity; putative
YP_005108975.1	similar to GP:11275975; identified by sequence similarity; putative
YP_005108976.1	similar to GP:5420003, and GP:5420003; identified by sequence similarity; putative
YP_005108977.1	similar to GB:M90413, PID:153311, GB:Z22551, GB:D13629, GB:L25616, PID:285985, and PID:409466; identified by sequence similarity; putative
YP_005108978.1	similar to GP:15156545, and GP:15156545; identified by sequence similarity; putative
YP_005108979.1	similar to SP:P47233; identified by sequence similarity; putative
YP_005108980.1	similar to SP:P81065, GB:J00117, GB:K03180, GB:K03187, GB:K03188, GB:K03189, GB:X00265, GB:X00266, GB:K03183, GB:K00092, GB:K03182, SP:P01229, SP:P01233, PID:1335012, PID:1335075, PID:180437, PID:180444, and PID:180453; identified by sequence similarity; putative
YP_005108982.1	identified by match to PFAM protein family HMM PF03772
YP_005108983.1	catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate
YP_005108984.1	3'-5' exonuclease of DNA polymerase III
YP_005108986.1	similar to GP:15160122; identified by sequence similarity; putative
YP_005108987.1	identified by match to TIGR protein family HMM TIGR01188
YP_005108988.1	identified by match to PFAM protein family HMM PF03772
YP_005108989.1	identified by match to PFAM protein family HMM PF00528
YP_005108990.1	identified by match to TIGR protein family HMM TIGR01698
YP_005108991.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_005108992.1	identified by match to TIGR protein family HMM TIGR01682
YP_005108993.1	identified by match to PFAM protein family HMM PF01325
YP_005108995.1	similar to SP:P76269; identified by sequence similarity; putative
YP_005108997.1	identified by match to TIGR protein family HMM TIGR00004
YP_005108999.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_005109000.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_005109001.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_005109002.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_005109003.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_005109004.1	identified by match to TIGR protein family HMM TIGR01668
YP_005109005.1	similar to GP:15073363, and GP:15073363; identified by sequence similarity; putative
YP_005109006.1	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_005109009.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_005109010.1	similar to GP:15073353; identified by sequence similarity; putative
YP_005109012.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_005109013.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_005109014.1	similar to GP:14024818; identified by sequence similarity; putative
YP_005109015.1	similar to GP:15073194, and GP:15073194; identified by sequence similarity; putative
YP_005109017.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_005109019.1	identified by match to TIGR protein family HMM TIGR01181
YP_005109020.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_005109022.1	identified by match to PFAM protein family HMM PF03578
YP_005109023.1	identified by match to PFAM protein family HMM PF00037
YP_005109024.1	similar to GP:15073254; identified by sequence similarity; putative
YP_005109025.1	D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm
YP_005109026.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_005109027.1	catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate
YP_005109028.1	similar to GB:U09086, GB:U09087, GB:U09088, GB:S76736, SP:P42166, SP:P42167, PID:508725, PID:508727, PID:508729, PID:885683, and PID:885684; identified by sequence similarity; putative
YP_005109029.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_005109030.1	catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_005109031.1	identified by match to PFAM protein family HMM PF03663
YP_005109032.1	similar to GP:3128327, GB:U05040, and PID:460152; identified by sequence similarity; putative
YP_005109033.1	similar to GP:15155425; identified by sequence similarity; putative
YP_005109036.1	similar to GP:3336914; identified by sequence similarity; putative
YP_005109037.1	similar to GP:15074185, and GP:15074185; identified by sequence similarity; putative
YP_005109038.1	similar to GP:15157671, and SP:O66043; identified by sequence similarity; putative
YP_005109041.1	identified by match to TIGR protein family HMM TIGR01393
YP_005109042.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_005109043.1	identified by match to PFAM protein family HMM PF00069
YP_005109044.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_005109045.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_005109046.1	identified by match to PFAM protein family HMM PF03670
YP_005109047.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_005109050.1	similar to GP:581026, GB:U12707, GB:U19927, GB:U18935, and PID:622987; identified by sequence similarity; putative
YP_005109051.1	identified by match to TIGR protein family HMM TIGR01199
YP_005109052.1	identified by match to PFAM protein family HMM PF00392
YP_005109054.1	similar to GP:15159844; identified by sequence similarity; putative
YP_005109055.1	similar to GP:14587414; identified by sequence similarity; putative
YP_005109056.1	similar to GP:3402247; identified by sequence similarity; putative
YP_005109057.1	similar to GB:M23592, GB:M23593, GB:M23594, GB:M23595, GB:M20841, GB:M74587, GB:M59316, GB:M31145, GB:X12385, GB:X15002, GB:X13405, GB:Y00856, SP:P08833, PID:183118, PID:184810, PID:184812, PID:184826, PID:32609, PID:33014, PID:35572, and PID:35575; identified by sequence similarity; putative
YP_005109058.1	similar to SP:P94312; identified by sequence similarity; putative
YP_005109059.1	similar to SP:P94311; identified by sequence similarity; putative
YP_005109060.1	identified by match to PFAM protein family HMM PF01614
YP_005109061.1	similar to GB:L17071, SP:Q07608, GB:U23753, PID:310304, and PID:763542; identified by sequence similarity; putative
YP_005109062.1	converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation
YP_005109063.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_005109064.1	similar to SP:P45857; identified by sequence similarity; putative
YP_005109065.1	similar to SP:P15558; identified by sequence similarity; putative
YP_005109066.1	similar to GP:15160115, and SP:P55669; identified by sequence similarity; putative
YP_005109068.1	similar to GP:10172641, and GP:18092570; identified by sequence similarity; putative
YP_005109069.1	similar to GP:15160117, and SP:P94312; identified by sequence similarity; putative
YP_005109070.1	similar to GP:15158781; identified by sequence similarity; putative
YP_005109071.1	similar to GP:14523620; identified by sequence similarity; putative
YP_005109072.1	similar to GP:18092565; identified by sequence similarity; putative
YP_005109073.1	similar to SP:P94311; identified by sequence similarity; putative
YP_005109074.1	similar to SP:P94312; identified by sequence similarity; putative
YP_005109075.1	similar to SP:Q53194, GB:M62834, SP:P24093, GB:X69102, PID:145801, PID:433881, PID:639970, and SP:Q57254; identified by sequence similarity; putative
YP_005109076.1	similar to GB:M20867, GB:M18377, GB:J03248, GB:M17697, GB:M37154, GB:X07769, GB:X53146, GB:X66300, SP:P00367, SP:P49448, PID:1335082, PID:183054, PID:183056, PID:183058, PID:183060, PID:183062, PID:31707, PID:31799, PID:478988, and PID:579924; identified by sequence similarity; putative
YP_005109077.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_005109078.1	identified by match to TIGR protein family HMM TIGR00969
YP_005109079.1	similar to SP:P23860, GB:L26967, SP:P12780, PID:152249, and PID:435107; identified by sequence similarity; putative
YP_005109080.1	identified by match to PFAM protein family HMM PF03781
YP_005109082.1	similar to GP:15075256, GB:X12466, GB:M37716, GB:M15919, SP:P08578, PID:338267, PID:338269, and PID:35105; identified by sequence similarity; putative
YP_005109083.1	similar to GB:J00222, GB:S55273, SP:P01854, PID:184760, PID:2300106, PID:386807, GB:J00222, GB:S55273, SP:P01854, PID:184760, PID:2300106, and PID:386807; identified by sequence similarity; putative
YP_005109085.1	identified by match to PFAM protein family HMM PF02452
YP_005109086.1	identified by match to TIGR protein family HMM TIGR01199
YP_005109087.1	similar to GP:581026, GB:U12707, GB:U19927, GB:U18935, and PID:622987; identified by sequence similarity; putative
YP_005109088.1	similar to GP:14024748, and GP:14024748; identified by sequence similarity; putative
YP_005109089.1	identified by match to PFAM protein family HMM PF02082
YP_005109090.1	similar to GP:15160214; identified by sequence similarity; putative
YP_005109092.1	similar to GP:15074849, and SP:P39172; identified by sequence similarity; putative
YP_005109093.1	similar to GP:15156606; identified by sequence similarity; putative
YP_005109094.1	similar to GP:15074847, and GP:17739944; identified by sequence similarity; putative
YP_005109095.1	similar to GP:15156604; identified by sequence similarity; putative
YP_005109098.1	similar to GP:15073620; identified by sequence similarity; putative
YP_005109099.1	similar to GP:15073619, and GP:15073619; identified by sequence similarity; putative
YP_005109100.1	similar to GP:3876134; identified by sequence similarity; putative
YP_005109101.1	FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus
YP_005109102.1	membrane protein involved in the flagellar export apparatus
YP_005109103.1	FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum
YP_005109104.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella
YP_005109105.1	post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella
YP_005109106.1	acts as an activator or flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella
YP_005109107.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella
YP_005109108.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_005109109.1	the hook connects flagellar basal body to the flagellar filament
YP_005109110.1	similar to GP:15073608; identified by sequence similarity; putative
YP_005109111.1	similar to GP:15073607, and GP:15073607; identified by sequence similarity; putative
YP_005109112.1	similar to GP:15155510, and SP:Q52964; identified by sequence similarity; putative
YP_005109113.1	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_005109114.1	similar to GP:15155507, and GP:12057223; identified by sequence similarity; putative
YP_005109115.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_005109116.1	similar to GP:2832232; identified by sequence similarity; putative
YP_005109117.1	similar to GP:15162141, and GP:15162141; identified by sequence similarity; putative
YP_005109119.1	similar to GB:X03656, GB:X03438, GB:M17706, SP:P09919, PID:1330309, PID:1330310, PID:183041, PID:183045, PID:296647, PID:31690, and PID:732764; identified by sequence similarity; putative
YP_005109120.1	with XylFH is part of the high affinity xylose ABC transporter
YP_005109121.1	similar to GB:L17326, and PID:306325; identified by sequence similarity; putative
YP_005109123.1	similar to SP:P36673, GB:U07790, PID:465107, PID:537083, GB:U00096, PID:1790689, and PID:1843456; identified by sequence similarity; putative
YP_005109124.1	similar to GP:4566586; identified by sequence similarity; putative
YP_005109125.1	similar to GB:M79446, SP:P24182, GB:M83198, PID:145175, PID:145893, PID:145896, PID:606196, GB:U00096, PID:1789654, GB:U03272, SP:P35556, and PID:437972; identified by sequence similarity; putative
YP_005109127.1	similar to GB:M98276, SP:Q04626, GB:M64046, PID:151020, PID:45360, SP:P77915, PID:1515308, GB:M13300, GB:M13301, GB:M13302, GB:M13303, GB:M13304, GB:M13305, GB:X54705, GB:X54675, GB:Z68193, SP:P04000, SP:P04001, PID:1122284, and PID:180703; identified by sequence similarity; putative
YP_005109128.1	similar to GP:14424793; identified by sequence similarity; putative
YP_005109129.1	similar to GB:X75771, and PID:455422; identified by sequence similarity; putative
YP_005109130.1	similar to GP:10048282, and SP:Q05354; identified by sequence similarity; putative
YP_005109131.1	identified by match to PFAM protein family HMM PF03551
YP_005109132.1	similar to GP:15162021, and GP:14026357; identified by sequence similarity; putative
YP_005109133.1	similar to GP:14524116; identified by sequence similarity; putative
YP_005109134.1	identified by match to TIGR protein family HMM TIGR00699
YP_005109135.1	similar to GB:M60787, and PID:150163; identified by sequence similarity; putative
YP_005109136.1	similar to GP:14271863; identified by sequence similarity; putative
YP_005109137.1	similar to GB:D12765, SP:P43268, PID:219611, and PID:602288; identified by sequence similarity; putative
YP_005109138.1	similar to GP:5441757; identified by sequence similarity; putative
YP_005109139.1	similar to GB:M11147, GB:M10119, GB:M12938, GB:X03742, GB:X03743, SP:P02792, PID:1340145, PID:1340146, PID:182514, PID:182516, PID:182518, PID:2230869, and PID:28519; identified by sequence similarity; putative
YP_005109142.1	similar to GP:9716222; identified by sequence similarity; putative
YP_005109143.1	similar to GP:15156481; identified by sequence similarity; putative
YP_005109144.1	similar to GB:M16442, and PID:143790; identified by sequence similarity; putative
YP_005109145.1	identified by match to PFAM protein family HMM PF03988
YP_005109146.1	identified by match to PFAM protein family HMM PF03741
YP_005109147.1	identified by match to PFAM protein family HMM PF00392
YP_005109149.1	identified by match to TIGR protein family HMM TIGR00023
YP_005109150.1	identified by match to TIGR protein family HMM TIGR00969
YP_005109151.1	similar to SP:Q01937; identified by sequence similarity; putative
YP_005109152.1	identified by match to PFAM protein family HMM PF00149
YP_005109153.1	identified by match to PFAM protein family HMM PF00884
YP_005109154.1	similar to GP:7799282, and SP:Q47537; identified by sequence similarity; putative
YP_005109155.1	similar to GP:7799281; identified by sequence similarity; putative
YP_005109156.1	similar to GP:7799280, and SP:Q47539; identified by sequence similarity; putative
YP_005109157.1	similar to GP:2661680; identified by sequence similarity; putative
YP_005109158.1	similar to GB:X73376, GB:X73377, GB:X73378, GB:X73379, GB:X73380, GB:X73381, GB:X73382, GB:X73384, GB:X73385, PID:475179, and PID:475185; identified by sequence similarity; putative
YP_005109160.1	identified by match to PFAM protein family HMM PF00191
YP_005109161.1	similar to GP:151110, and SP:P04816; identified by sequence similarity; putative
YP_005109162.1	similar to GB:L19201, SP:P32174, PID:304996, GB:U00096, and PID:1790325; identified by sequence similarity; putative
YP_005109163.1	similar to GB:M59757, SP:P25993, PID:143389, and GB:AL009126; identified by sequence similarity; putative
YP_005109164.1	similar to SP:P22731, GB:M16442, and PID:143790; identified by sequence similarity; putative
YP_005109165.1	similar to GP:3128316, and GP:17984226; identified by sequence similarity; putative
YP_005109166.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_005109169.1	identified by match to TIGR protein family HMM TIGR01281
YP_005109170.1	similar to SP:P55392; identified by sequence similarity; putative
YP_005153711.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_005153712.1	binds the polymerase to DNA and acts as a sliding clamp
YP_005153713.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_005153714.1	ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase
YP_005153715.1	identified by similarity to EGAD:90750; match to protein family HMM PF02826
YP_005153716.1	identified by similarity to SP:P33916; match to protein family HMM PF00005
YP_005153717.1	identified by similarity to GP:17983985; match to protein family HMM PF00528
YP_005153718.1	identified by similarity to SP:P33914; match to protein family HMM PF00528
YP_005153719.1	identified by similarity to SP:P33913; match to protein family HMM PF00496
YP_005153720.1	identified by match to protein family HMM PF00496
YP_005153724.1	identified by similarity to SP:P02917; match to protein family HMM PF01094
YP_005153725.1	identified by similarity to OMNI:NTL02ML1891
YP_005153726.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_005153727.1	identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_005153728.1	identified by match to protein family HMM PF01039
YP_005153729.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771
YP_005153730.1	AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase
YP_005153731.1	identified by similarity to OMNI:NTL02ML1269
YP_005153732.1	identified by similarity to OMNI:CC1521; match to protein family HMM PF01757
YP_005153733.1	identified by similarity to GP:15073181
YP_005153734.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_005153735.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_005153736.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_005153737.1	identified by similarity to GP:15155628; match to protein family HMM PF03601
YP_005153738.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_005153741.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_005153742.1	identified by similarity to OMNI:NTL02ML4268; match to protein family HMM PF02575; match to protein family HMM TIGR00103
YP_005153743.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_005153744.1	identified by similarity to OMNI:NTL02ML4266; match to protein family HMM PF01230
YP_005153745.1	identified by similarity to OMNI:NTL02ML4265; match to protein family HMM PF00293
YP_005153746.1	catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis
YP_005153747.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_005153748.1	identified by similarity to EGAD:14195; match to protein family HMM PF00034
YP_005153749.1	identified by similarity to GP:14021137; match to protein family HMM PF00994
YP_005153751.1	identified by similarity to EGAD:20044; match to protein family HMM TIGR01433
YP_005153752.1	identified by similarity to EGAD:14783; match to protein family HMM PF00115
YP_005153753.1	identified by similarity to EGAD:13682; match to protein family HMM PF00510
YP_005153754.1	identified by similarity to EGAD:20825; match to protein family HMM PF03626
YP_005153756.1	identified by similarity to GP:3511221
YP_005153757.1	identified by similarity to OMNI:NTL02ML1304; match to protein family HMM PF01103
YP_005153758.1	identified by similarity to GP:15076022; match to protein family HMM PF04357; match to protein family HMM TIGR01612
YP_005153759.1	identified by similarity to GP:15160041; match to protein family HMM PF03734; match to protein family HMM TIGR01409
YP_005153763.1	identified by similarity to GP:15074483; match to protein family HMM PF04314
YP_005153765.1	identified by match to protein family HMM PF00903
YP_005153766.1	identified by match to protein family HMM PF01883
YP_005153767.1	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate
YP_005153769.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_005153771.1	identified by similarity to GP:11066210
YP_005153772.1	identified by match to protein family HMM PF01557
YP_005153773.1	identified by similarity to GP:15073555
YP_005153775.1	identified by similarity to OMNI:NTL02ML3554
YP_005153776.1	identified by match to protein family HMM PF01464
YP_005153777.1	identified by similarity to EGAD:38000; match to protein family HMM PF03006
YP_005153778.1	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.
YP_005153779.1	identified by similarity to GP:14523587
YP_005153780.1	identified by similarity to GP:15076199
YP_005153781.1	identified by similarity to SP:P10858; match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662
YP_005153782.1	identified by similarity to GP:15073388
YP_005153783.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_005153785.1	identified by similarity to OMNI:NTL02ML3355; match to protein family HMM PF04055; match to protein family HMM TIGR00048
YP_005153788.1	identified by similarity to GP:15076241
YP_005153789.1	identified by similarity to GP:15076242
YP_005153790.1	4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction
YP_005153791.1	identified by match to protein family HMM PF01451
YP_005153792.1	identified by similarity to OMNI:NTL02ML3347
YP_005153793.1	identified by match to protein family HMM PF00657
YP_005153794.1	identified by match to protein family HMM PF00005
YP_005153795.1	identified by match to protein family HMM PF02687
YP_005153796.1	identified by similarity to GP:15076248; match to protein family HMM PF01027
YP_005153797.1	identified by similarity to EGAD:8993; match to protein family HMM PF00583
YP_005153798.1	identified by similarity to GP:15076253
YP_005153799.1	identified by similarity to GP:15076254
YP_005153801.1	Catalyzes the conversion of citrate to isocitrate
YP_005153802.1	ATP-binding protein; required for proper cytochrome c maturation
YP_005153803.1	identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190
YP_005153804.1	identified by similarity to SP:P30962; match to protein family HMM PF01578; match to protein family HMM TIGR01191
YP_005153805.1	identified by similarity to EGAD:15659; match to protein family HMM PF04995
YP_005153806.1	identified by match to protein family HMM TIGR00385
YP_005153807.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_005153809.1	identified by similarity to GP:15157523
YP_005153810.1	identified by similarity to OMNI:CC3015; match to protein family HMM PF00072
YP_005153812.1	identified by similarity to GP:15155891
YP_005153814.1	identified by similarity to EGAD:8060
YP_005153815.1	identified by similarity to GP:17983880; match to protein family HMM PF01547; match to protein family HMM TIGR00971
YP_005153816.1	identified by similarity to SP:Q01895; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139
YP_005153817.1	identified by similarity to SP:P16702; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140
YP_005153818.1	identified by similarity to SP:P14788; match to protein family HMM PF00005; match to protein family HMM TIGR00968
YP_005153819.1	identified by similarity to GP:3551791; match to protein family HMM TIGR01612
YP_005153820.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_005153821.1	identified by similarity to EGAD:38480; match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_005153822.1	identified by similarity to GP:15075131
YP_005153823.1	identified by similarity to EGAD:15614; match to protein family HMM PF00294
YP_005153824.1	identified by match to protein family HMM PF00106
YP_005153825.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_005153827.1	identified by similarity to EGAD:151783
YP_005153828.1	identified by match to protein family HMM PF01612
YP_005153829.1	identified by match to protein family HMM PF01546
YP_005153831.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_005153832.1	identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880
YP_005153833.1	negatively supercoils closed circular double-stranded DNA
YP_005153835.1	identified by similarity to OMNI:NTL02ML5595; match to protein family HMM PF00756
YP_005153836.1	identified by similarity to GP:14021760
YP_005153837.1	identified by match to protein family HMM PF00583
YP_005153838.1	identified by similarity to EGAD:97446; match to protein family HMM PF02583
YP_005153839.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_005153840.1	identified by similarity to EGAD:46813
YP_005153841.1	identified by similarity to PIR:PN0685; match to protein family HMM PF01609
YP_005153843.1	identified by match to protein family HMM PF00072; match to protein family HMM TIGR01199
YP_005153844.1	identified by similarity to GP:15154914
YP_005153845.1	identified by similarity to GP:9392598; match to protein family HMM PF03734
YP_005153846.1	identified by match to protein family HMM PF01106
YP_005153847.1	identified by similarity to GP:15155260; match to protein family HMM PF00582
YP_005153848.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_005153849.1	identified by similarity to SP:P56882; match to protein family HMM PF03023; match to protein family HMM TIGR01695
YP_005153850.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_005153852.1	This protein performs the mismatch recognition step during the DNA repair process
YP_005153853.1	identified by similarity to GP:15073322
YP_005153854.1	identified by similarity to EGAD:21383; match to protein family HMM PF01252; match to protein family HMM TIGR00077
YP_005153855.1	identified by match to protein family HMM PF00588
YP_005153856.1	identified by similarity to OMNI:NTL02ML2473
YP_005153857.1	identified by similarity to GP:15073316
YP_005153858.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_005153859.1	identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706
YP_005153860.1	identified by similarity to GP:15155241
YP_005153861.1	identified by similarity to GP:15155240; match to protein family HMM PF03968
YP_005153862.1	identified by similarity to GP:17983823; match to protein family HMM PF00005
YP_005153863.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_005153865.1	identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741
YP_005153866.1	identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419
YP_005153867.1	identified by similarity to GP:15073342
YP_005153868.1	identified by similarity to OMNI:CC3592; match to protein family HMM PF00011
YP_005153870.1	identified by similarity to GP:15158767
YP_005153871.1	identified by similarity to EGAD:18451; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083
YP_005153872.1	putative role in sulfur assimilation
YP_005153874.1	identified by match to protein family HMM PF00294
YP_005153875.1	identified by similarity to GP:15155036; match to protein family HMM PF03458
YP_005153876.1	identified by match to protein family HMM PF01025
YP_005153877.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_005153878.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_005153879.1	identified by match to protein family HMM PF00903
YP_005153880.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_005153881.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_005153882.1	identified by similarity to OMNI:CC0144; match to protein family HMM PF00590; match to protein family HMM TIGR00096
YP_005153883.1	identified by similarity to GP:15073266; match to protein family HMM PF02021
YP_005153884.1	identified by similarity to SP:P11098; match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470
YP_005153885.1	identified by similarity to GP:15156533
YP_005153886.1	identified by similarity to OMNI:CC1119; match to protein family HMM PF01077; match to protein family HMM PF03460
YP_005153887.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_005153888.1	identified by similarity to GP:15156535
YP_005153889.1	identified by similarity to GP:14021352
YP_005153890.1	identified by similarity to OMNI:CC0659; match to protein family HMM PF01035; match to protein family HMM TIGR00589
YP_005153891.1	identified by similarity to GP:14025509
YP_005153892.1	identified by similarity to GP:15073804
YP_005153893.1	one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity
YP_005153895.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472
YP_005153896.1	identified by match to protein family HMM PF00202
YP_005153898.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_005153899.1	in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis
YP_005153900.1	identified by similarity to SP:P22255; match to protein family HMM PF00459; match to protein family HMM TIGR01331
YP_005153901.1	identified by match to protein family HMM PF00027
YP_005153903.1	identified by similarity to SP:P09392; match to protein family HMM PF00455
YP_005153904.1	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane
YP_005153905.1	identified by match to protein family HMM PF00171
YP_005153906.1	identified by similarity to SP:P42327; match to protein family HMM PF00107
YP_005153907.1	identified by similarity to OMNI:NTL02ML5214; match to protein family HMM PF05610
YP_005153911.1	identified by similarity to EGAD:17385; match to protein family HMM PF00171
YP_005153912.1	identified by match to protein family HMM PF00528
YP_005153913.1	identified by similarity to EGAD:24145; match to protein family HMM PF03070
YP_005153915.1	Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate
YP_005153916.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_005153917.1	identified by similarity to SP:O32583; match to protein family HMM PF02597; match to protein family HMM TIGR01683
YP_005153918.1	identified by match to protein family HMM PF01266
YP_005153919.1	identified by match to protein family HMM TIGR00097
YP_005153920.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_005153921.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_005153922.1	identified by match to protein family HMM PF00376
YP_005153923.1	identified by match to protein family HMM PF00528
YP_005153924.1	identified by match to protein family HMM PF00005
YP_005153925.1	identified by similarity to SP:P33361; match to protein family HMM PF00528
YP_005153926.1	identified by similarity to GP:17983752; match to protein family HMM PF04069
YP_005153927.1	identified by similarity to OMNI:NTL02ML0782
YP_005153928.1	identified by similarity to EGAD:22862; match to protein family HMM PF00208; match to protein family HMM PF02812
YP_005153930.1	identified by similarity to SP:P40875; match to protein family HMM PF01266; match to protein family HMM TIGR01373
YP_005153931.1	identified by similarity to EGAD:43131; match to protein family HMM PF04267; match to protein family HMM TIGR01374
YP_005153932.1	identified by similarity to EGAD:43132; match to protein family HMM PF01571; match to protein family HMM TIGR01372
YP_005153933.1	identified by similarity to EGAD:43133; match to protein family HMM PF04268
YP_005153934.1	identified by similarity to OMNI:NTL02ML5639
YP_005153935.1	identified by match to protein family HMM PF01614
YP_005153936.1	identified by match to protein family HMM PF01547
YP_005153937.1	identified by match to protein family HMM PF00528
YP_005153938.1	identified by match to protein family HMM PF00528
YP_005153939.1	identified by similarity to SP:Q00752; match to protein family HMM PF00005; match to protein family HMM PF03459
YP_005153940.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_005153941.1	identified by similarity to GP:15140572; match to protein family HMM PF05336
YP_005153942.1	identified by match to protein family HMM PF01408
YP_005153944.1	identified by match to protein family HMM PF00106
YP_005153945.1	identified by similarity to GP:15140576; match to protein family HMM PF01557
YP_005153946.1	identified by match to protein family HMM PF01188
YP_005153949.1	identified by similarity to OMNI:NTL02ML5069; match to protein family HMM PF03884
YP_005153950.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_005153951.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_005153952.1	identified by match to protein family HMM PF01451
YP_005153953.1	identified by similarity to OMNI:NTL02ML5073
YP_005153954.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_005153955.1	identified by similarity to GP:15073540
YP_005153956.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_005153957.1	identified by similarity to OMNI:NTL02ML5077
YP_005153958.1	identified by match to protein family HMM PF00589; match to protein family HMM PF02899
YP_005153960.1	identified by match to protein family HMM PF02498
YP_005153962.1	identified by match to protein family HMM PF00239
YP_005153966.1	identified by similarity to OMNI:NTL02ML3521
YP_005153969.1	identified by similarity to SP:P42888; match to protein family HMM PF01774
YP_005153970.1	UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter
YP_005153971.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active
YP_005153972.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_005153973.1	involved in the assembly of the urease metallocenter; possible nickel donor
YP_005153974.1	identified by similarity to SP:Q07402; match to protein family HMM PF01730
YP_005153975.1	identified by similarity to EGAD:19477; match to protein family HMM PF01495; match to protein family HMM TIGR00101
YP_005153976.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_005153978.1	identified by similarity to GP:15075163; match to protein family HMM TIGR01730
YP_005153979.1	identified by match to protein family HMM PF00873
YP_005153980.1	catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position
YP_005153981.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_005153982.1	identified by match to protein family HMM PF00440
YP_005153983.1	identified by match to protein family HMM PF00293
YP_005153984.1	catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines
YP_005153985.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_005153986.1	identified by similarity to GP:15073317
YP_005153987.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_005153988.1	identified by similarity to GP:15073237
YP_005153989.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_005153990.1	identified by similarity to OMNI:NTL03PA01240
YP_005153991.1	activates fatty acids by binding to coenzyme A
YP_005153992.1	identified by match to protein family HMM PF00440
YP_005153993.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_005153994.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915
YP_005153997.1	identified by match to protein family HMM PF00497
YP_005153998.1	identified by match to protein family HMM PF00535
YP_005153999.1	identified by similarity to GP:15155336; match to protein family HMM PF03976
YP_005154000.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_005154001.1	identified by similarity to GP:15073446
YP_005154003.1	DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_005154004.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_005154005.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_005154006.1	protein associated with Co2+ and Mg2+ efflux
YP_005154007.1	catalyzes the conversion of O-succinylhomoserine and sulfide to homocysteine; second step in methionine biosynthesis
YP_005154008.1	Catalyzes the deamination of dCTP to form dUTP
YP_005154009.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_005154010.1	identified by similarity to GP:15155415
YP_005154011.1	identified by similarity to OMNI:NTL02ML6482; match to protein family HMM PF00188
YP_005154012.1	identified by similarity to EGAD:8949; match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_005154013.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_005154014.1	identified by similarity to GP:15073480
YP_005154015.1	identified by similarity to OMNI:NTL02ML4408
YP_005154016.1	identified by similarity to EGAD:139406; match to protein family HMM PF00561; match to protein family HMM TIGR01249
YP_005154017.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_005154018.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_005154020.1	homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_005154021.1	catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine
YP_005154022.1	identified by match to protein family HMM PF01522
YP_005154023.1	identified by similarity to GP:12837556; match to protein family HMM PF01755
YP_005154024.1	identified by similarity to GP:15157577
YP_005154026.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_005154027.1	identified by similarity to OMNI:NTL03PA03432; match to protein family HMM PF03788
YP_005154028.1	identified by similarity to OMNI:NTL03PA03431; match to protein family HMM PF04172
YP_005154030.1	identified by similarity to GP:15155313
YP_005154031.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_005154032.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_005154033.1	identified by similarity to SP:Q44532; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_005154036.1	identified by similarity to EGAD:19651; match to protein family HMM PF00278; match to protein family HMM TIGR01047
YP_005154037.1	identified by similarity to GP:15141437; match to protein family HMM PF03435
YP_005154039.1	identified by similarity to GP:9695312; match to protein family HMM PF05544
YP_005154041.1	identified by similarity to SP:O82855; match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_005154042.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_005154043.1	identified by similarity to GP:15162042; match to protein family HMM PF04290
YP_005154044.1	identified by match to protein family HMM TIGR00786
YP_005154045.1	identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409
YP_005154046.1	identified by similarity to OMNI:NTL02ML3955
YP_005154047.1	identified by similarity to OMNI:NTL02ML3956; match to protein family HMM PF01522
YP_005154048.1	identified by similarity to GP:15140674
YP_005154049.1	identified by similarity to OMNI:NTL02ML3958; match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450
YP_005154050.1	identified by match to protein family HMM PF01315; match to protein family HMM PF02738
YP_005154051.1	identified by similarity to OMNI:CC2617
YP_005154052.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_005154053.1	identified by similarity to GP:15140681
YP_005154054.1	Catalyzes the deamination of guanine
YP_005154055.1	identified by similarity to EGAD:40602; match to protein family HMM PF05161
YP_005154056.1	identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847
YP_005154057.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_005154058.1	identified by similarity to EGAD:10086; match to protein family HMM PF05751
YP_005154060.1	identified by match to protein family HMM PF00034; match to protein family HMM TIGR00782
YP_005154061.1	identified by similarity to EGAD:125983; match to protein family HMM PF05545
YP_005154062.1	identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781
YP_005154063.1	identified by match to protein family HMM PF00115; match to protein family HMM TIGR00780
YP_005154064.1	identified by match to protein family HMM PF01475
YP_005154066.1	identified by similarity to GP:13235366; match to protein family HMM PF01323; match to protein family HMM TIGR01409
YP_005154067.1	identified by match to protein family HMM PF00171
YP_005154068.1	identified by similarity to EGAD:7337; match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM TIGR00589
YP_005154069.1	identified by similarity to GP:15073235; match to protein family HMM PF03960; match to protein family HMM TIGR01617
YP_005154070.1	identified by similarity to GP:15156192
YP_005154071.1	in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope
YP_005154072.1	identified by similarity to OMNI:NTL02ML5836
YP_005154073.1	identified by similarity to OMNI:NTL02ML5837
YP_005154074.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_005154075.1	identified by similarity to SP:P04475
YP_005154077.1	identified by similarity to GP:14026921
YP_005154080.1	identified by similarity to EGAD:21946
YP_005154081.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_005154082.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_005154083.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.
YP_005154084.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_005154085.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_005154086.1	identified by similarity to GP:15073771; match to protein family HMM PF04055
YP_005154087.1	identified by similarity to GP:15155690
YP_005154093.1	identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154
YP_005154095.1	identified by match to protein family HMM PF01343
YP_005154096.1	identified by similarity to SP:P13738; match to protein family HMM TIGR00773
YP_005154098.1	identified by similarity to GP:15073779
YP_005154099.1	identified by similarity to GP:15073778
YP_005154100.1	identified by match to protein family HMM PF00348
YP_005154101.1	identified by match to protein family HMM PF00515
YP_005154102.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_005154103.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_005154104.1	identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057
YP_005154105.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_005154106.1	identified by similarity to OMNI:VCA0423; match to protein family HMM PF05016
YP_005154107.1	identified by similarity to GP:3337067
YP_005154109.1	identified by similarity to GP:15155604
YP_005154110.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_005154111.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_005154112.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_005154113.1	UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin
YP_005154114.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate
YP_005154115.1	identified by similarity to GP:14026958
YP_005154116.1	identified by match to protein family HMM PF00226; match to protein family HMM PF01556
YP_005154118.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_005154121.1	identified by similarity to GP:15160282
YP_005154122.1	identified by similarity to GP:14027592; match to protein family HMM PF04028
YP_005154123.1	identified by similarity to GP:15073831
YP_005154124.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_005154125.1	identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00506
YP_005154126.1	identified by match to protein family HMM PF00850
YP_005154127.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_005154128.1	identified by match to protein family HMM PF00597
YP_005154129.1	identified by similarity to OMNI:NTL02ML3629; match to protein family HMM PF04226
YP_005154130.1	identified by similarity to OMNI:NTL02ML3630
YP_005154131.1	identified by similarity to OMNI:CC3178; match to protein family HMM PF02678; match to protein family HMM PF05726
YP_005154132.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_005154133.1	identified by similarity to EGAD:20008; match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478
YP_005154135.1	identified by similarity to GP:15074050; match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_005154136.1	identified by similarity to GP:15157092
YP_005154137.1	identified by match to protein family HMM PF01476
YP_005154138.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_005154139.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_005154140.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473
YP_005154141.1	identified by match to protein family HMM PF00106
YP_005154142.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_005154144.1	identified by similarity to OMNI:NTL02ML6179; match to protein family HMM PF02674
YP_005154145.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_005154146.1	unwinds double stranded DNA
YP_005154147.1	identified by similarity to SP:P30010; match to protein family HMM PF02353
YP_005154148.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_005154149.1	identified by similarity to GP:15074068
YP_005154150.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_005154151.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_005154152.1	identified by similarity to OMNI:VC2163
YP_005154153.1	identified by similarity to EGAD:97846; match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_005154154.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_005154155.1	carries the fatty acid chain in fatty acid biosynthesis
YP_005154157.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_005154158.1	identified by similarity to GP:15074077; match to protein family HMM PF02618; match to protein family HMM TIGR00247
YP_005154159.1	identified by similarity to OMNI:NTL02ML6198; match to protein family HMM PF03755; match to protein family HMM TIGR00255
YP_005154160.1	Essential for recycling GMP and indirectly, cGMP
YP_005154161.1	identified by similarity to EGAD:30245; match to protein family HMM PF01523
YP_005154162.1	identified by similarity to GP:15073834
YP_005154163.1	identified by similarity to EGAD:8295; match to protein family HMM PF00116; match to protein family HMM PF02790
YP_005154164.1	identified by similarity to EGAD:5976; match to protein family HMM PF00115
YP_005154165.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_005154166.1	identified by similarity to OMNI:NTL02ML5908
YP_005154167.1	involved in the insertion of copper into subunit I of cytochrome C oxidase
YP_005154168.1	identified by match to protein family HMM PF00510
YP_005154169.1	identified by similarity to GP:14026992
YP_005154170.1	identified by match to protein family HMM PF02104
YP_005154171.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_005154172.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine
YP_005154173.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_005154174.1	identified by match to protein family HMM PF00578
YP_005154175.1	identified by similarity to OMNI:NTL02ML5920
YP_005154176.1	identified by similarity to OMNI:NTL02ML5921; match to protein family HMM PF02622
YP_005154177.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_005154178.1	identified by match to protein family HMM PF00583
YP_005154179.1	identified by similarity to OMNI:NTL01BH2408; match to protein family HMM PF00675; match to protein family HMM PF05193
YP_005154180.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_005154183.1	identified by similarity to OMNI:NTL03PA02200; match to protein family HMM PF00563
YP_005154184.1	identified by similarity to OMNI:NTL02ML1736
YP_005154185.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_005154186.1	identified by match to protein family HMM PF00654
YP_005154187.1	identified by similarity to EGAD:154344; match to protein family HMM PF01555
YP_005154188.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_005154189.1	identified by similarity to EGAD:19424; match to protein family HMM PF00730; match to protein family HMM TIGR01084
YP_005154190.1	identified by similarity to GP:15073860
YP_005154192.1	identified by similarity to GP:15155781; match to protein family HMM PF01323; match to protein family HMM TIGR01409
YP_005154193.1	identified by similarity to OMNI:NTL02ML5933; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM TIGR02168
YP_005154194.1	identified by similarity to SP:P13512; match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_005154195.1	identified by match to protein family HMM PF00903
YP_005154196.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_005154199.1	identified by similarity to OMNI:NTL02ML5941
YP_005154200.1	identified by match to protein family HMM PF00753
YP_005154201.1	identified by match to protein family HMM PF02632
YP_005154202.1	catalyzes the formation of glyoxylate from (S)-ureidoglycolate
YP_005154203.1	identified by similarity to GP:15157490; match to protein family HMM PF00576
YP_005154204.1	identified by similarity to GP:15157607
YP_005154205.1	identified by similarity to GP:6009656; match to protein family HMM PF02719
YP_005154206.1	identified by match to protein family HMM PF00953
YP_005154210.1	identified by match to protein family HMM PF00551
YP_005154211.1	identified by similarity to GP:4071215
YP_005154212.1	identified by similarity to SP:Q56903; match to protein family HMM PF00005
YP_005154213.1	identified by similarity to SP:Q56902; match to protein family HMM PF01061
YP_005154214.1	identified by similarity to EGAD:15706; match to protein family HMM PF01041
YP_005154215.1	identified by similarity to EGAD:11583; match to protein family HMM TIGR01472
YP_005154216.1	identified by similarity to GP:4071219
YP_005154218.1	identified by similarity to EGAD:46813
YP_005154219.1	identified by similarity to PIR:PN0685; match to protein family HMM PF01609
YP_005154220.1	identified by match to protein family HMM PF00534
YP_005154221.1	identified by similarity to EGAD:36179
YP_005154222.1	identified by similarity to GP:482819
YP_005154223.1	identified by similarity to GP:4071219
YP_005154224.1	identified by similarity to GP:4071222; match to protein family HMM PF01609
YP_005154225.1	identified by similarity to EGAD:8806; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_005154226.1	identified by similarity to EGAD:97081; match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479
YP_005154227.1	identified by similarity to SP:P29954
YP_005154228.1	identified by similarity to GP:3249553; match to protein family HMM PF00534
YP_005154230.1	identified by similarity to SP:P04983; match to protein family HMM PF00005
YP_005154231.1	identified by similarity to SP:P36948; match to protein family HMM PF02653
YP_005154232.1	identified by similarity to SP:P02926; match to protein family HMM PF00532
YP_005154233.1	identified by similarity to GP:15075918
YP_005154234.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_005154235.1	catalyzes the interconversion of D-xylose to D-xylulose
YP_005154236.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312
YP_005154237.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_005154238.1	identified by match to protein family HMM PF00165
YP_005154240.1	catalyzes the formation of betaine from betaine aldehyde
YP_005154241.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_005154242.1	HTH-type; bet1; Repressor involved in choline regulation of the bet genes
YP_005154243.1	identified by similarity to OMNI:NTL02ML6007
YP_005154244.1	identified by match to protein family HMM PF01272
YP_005154245.1	identified by similarity to EGAD:69439; match to protein family HMM PF05012; match to protein family HMM TIGR01550
YP_005154246.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439
YP_005154247.1	identified by similarity to GP:15620053; match to protein family HMM PF01544
YP_005154248.1	identified by match to protein family HMM PF00392
YP_005154250.1	identified by similarity to GP:15073896
YP_005154251.1	identified by similarity to OMNI:NTL02ML6012; match to protein family HMM PF05872
YP_005154252.1	identified by similarity to GP:15141233; match to protein family HMM PF03734; match to protein family HMM TIGR01409
YP_005154253.1	identified by similarity to SP:Q51645; match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493
YP_005154254.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_005154256.1	identified by similarity to EGAD:17797; match to protein family HMM PF00326; match to protein family HMM PF02897
YP_005154257.1	identified by similarity to EGAD:35422; match to protein family HMM PF05443
YP_005154260.1	identified by similarity to GP:15155912
YP_005154261.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_005154262.1	identified by similarity to OMNI:NTL02ML6032; match to protein family HMM PF02657
YP_005154263.1	identified by similarity to SP:Q52968
YP_005154265.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_005154266.1	identified by match to protein family HMM PF01471
YP_005154268.1	identified by similarity to GP:15073936
YP_005154269.1	identified by similarity to GP:15073939
YP_005154270.1	identified by similarity to OMNI:NTL02ML6040
YP_005154271.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_005154274.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537
YP_005154275.1	identified by similarity to GP:15155959
YP_005154276.1	identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543
YP_005154277.1	identified by match to protein family HMM TIGR01554
YP_005154278.1	identified by similarity to GP:15155962
YP_005154279.1	identified by similarity to GP:15155963; match to protein family HMM TIGR01563
YP_005154281.1	identified by similarity to GP:15155964
YP_005154282.1	identified by similarity to OMNI:CC2781; match to protein family HMM TIGR02126
YP_005154283.1	identified by similarity to GP:15155967
YP_005154284.1	identified by similarity to GP:15155972
YP_005154285.1	identified by similarity to GP:15155973
YP_005154286.1	identified by similarity to GP:15155974
YP_005154287.1	identified by match to protein family HMM PF00877
YP_005154288.1	identified by similarity to GP:15155977
YP_005154289.1	identified by similarity to OMNI:NTL02ML6060
YP_005154290.1	identified by similarity to OMNI:CC2766; match to protein family HMM PF00072; match to protein family HMM PF00486
YP_005154291.1	identified by similarity to GP:14027143; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_005154292.1	identified by similarity to GP:15073947
YP_005154294.1	CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane
YP_005154295.1	identified by similarity to EGAD:8346; match to protein family HMM PF01578; match to protein family HMM TIGR00353
YP_005154296.1	identified by similarity to SP:P45406; match to protein family HMM PF03918
YP_005154297.1	identified by similarity to EGAD:21403; match to protein family HMM PF00089; match to protein family HMM PF00595
YP_005154298.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_005154299.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_005154300.1	identified by similarity to EGAD:7704; match to protein family HMM PF03710
YP_005154301.1	identified by similarity to GP:15156909; match to protein family HMM PF01755; match to protein family HMM PF04932
YP_005154302.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_005154303.1	identified by similarity to OMNI:NTL02ML6073; match to protein family HMM PF01433
YP_005154304.1	identified by match to protein family HMM PF00892
YP_005154305.1	identified by match to protein family HMM PF00083
YP_005154306.1	identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758
YP_005154307.1	identified by similarity to EGAD:4120; match to protein family HMM PF05187
YP_005154308.1	identified by similarity to OMNI:NTL02ML6082; match to protein family HMM PF03372
YP_005154309.1	Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile
YP_005154312.1	identified by similarity to OMNI:CC2434; match to protein family HMM PF00043; match to protein family HMM PF02798
YP_005154313.1	identified by similarity to GP:15073978
YP_005154315.1	identified by similarity to OMNI:NTL02ML6087
YP_005154316.1	identified by similarity to OMNI:VC0940; match to protein family HMM PF02588
YP_005154319.1	identified by similarity to OMNI:NTL02ML2997
YP_005154320.1	identified by similarity to OMNI:NTL02ML6597; match to protein family HMM PF04241
YP_005154321.1	catalyzes the formation of histidinol phosphate and 2-oxoglutarate from glutamate and imidazole acetol-phosphate
YP_005154322.1	identified by match to protein family HMM PF00589; match to protein family HMM PF02899
YP_005154323.1	identified by similarity to GP:841493; match to protein family HMM PF02530
YP_005154325.1	identified by similarity to GP:841494; match to protein family HMM PF02530
YP_005154328.1	identified by similarity to EGAD:126787
YP_005154329.1	identified by match to protein family HMM PF01464
YP_005154332.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_005154333.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_005154334.1	identified by match to protein family HMM PF03167
YP_005154335.1	identified by match to protein family HMM PF01936
YP_005154337.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_005154338.1	identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_005154339.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_005154340.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_005154341.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_005154342.1	identified by similarity to EGAD:36955
YP_005154343.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_005154344.1	identified by similarity to GP:14027200
YP_005154345.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_005154346.1	identified by similarity to OMNI:NTL02ML6121; match to protein family HMM PF00461
YP_005154347.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_005154349.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_005154350.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_005154351.1	identified by similarity to GP:15074034
YP_005154352.1	identified by similarity to OMNI:NTL02ML6141
YP_005154353.1	identified by match to protein family HMM PF01571
YP_005154354.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_005154355.1	identified by similarity to GP:14027225
YP_005154356.1	identified by similarity to GP:15074038
YP_005154357.1	identified by similarity to OMNI:NTL02ML6146
YP_005154358.1	identified by match to protein family HMM PF00293
YP_005154359.1	identified by similarity to EGAD:107474; match to protein family HMM PF02586
YP_005154360.1	identified by match to protein family HMM PF01810
YP_005154363.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_005154365.1	catalyzes the formation of 2-isopropylmalate from 1-methyl-2-oxobutanoate and acetyl-CoA
YP_005154366.1	identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688
YP_005154367.1	identified by match to protein family HMM PF01551
YP_005154368.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_005154369.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_005154371.1	identified by similarity to EGAD:7471; match to protein family HMM PF04453
YP_005154372.1	identified by similarity to OMNI:NTL02ML6205; match to protein family HMM PF03739
YP_005154373.1	identified by match to protein family HMM PF03739
YP_005154375.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_005154376.1	binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB
YP_005154377.1	identified by similarity to OMNI:NTL02ML6220
YP_005154378.1	identified by match to protein family HMM PF00005
YP_005154379.1	identified by similarity to OMNI:NTL02ML6242; match to protein family HMM PF05163
YP_005154380.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_005154381.1	identified by similarity to GP:14027320; match to protein family HMM PF03724
YP_005154382.1	identified by similarity to SP:P30749; match to protein family HMM PF02391
YP_005154383.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682
YP_005154384.1	identified by similarity to SP:P06978; match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_005154385.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal is responsible for the 3' incision and the C-terminal is responsible for the 5' incision
YP_005154386.1	identified by match to protein family HMM PF00106
YP_005154387.1	identified by similarity to SP:Q45689; match to protein family HMM PF01389
YP_005154388.1	identified by similarity to OMNI:CC0147; match to protein family HMM PF02798
YP_005154389.1	identified by match to protein family HMM PF00445
YP_005154390.1	identified by similarity to OMNI:NTL02ML6225
YP_005154391.1	identified by similarity to OMNI:NTL02ML6221; match to protein family HMM PF04378
YP_005154392.1	identified by similarity to GP:15074178; match to protein family HMM PF00892
YP_005154393.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_005154394.1	identified by similarity to OMNI:NTL02ML2404
YP_005154395.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_005154396.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_005154399.1	identified by match to protein family HMM PF01594
YP_005154400.1	identified by similarity to GP:14027358
YP_005154403.1	identified by match to protein family HMM PF00106
YP_005154406.1	identified by similarity to SP:P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795
YP_005154407.1	identified by similarity to GP:15074650; match to protein family HMM PF04800
YP_005154409.1	identified by match to protein family HMM PF00929
YP_005154410.1	identified by similarity to EGAD:40466
YP_005154411.1	identified by match to protein family HMM PF00583
YP_005154412.1	identified by match to protein family HMM PF01381
YP_005154415.1	identified by match to protein family HMM PF00665
YP_005154416.1	identified by similarity to GP:11071899
YP_005154422.1	identified by similarity to GP:15162152
YP_005154425.1	catalyzes the formation of L-homocysteine from cystathionine
YP_005154426.1	identified by match to protein family HMM PF01569
YP_005154427.1	identified by similarity to EGAD:35379; match to protein family HMM PF00497; match to protein family HMM TIGR01096
YP_005154429.1	identified by similarity to EGAD:35466; match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_005154430.1	identified by similarity to SP:P45768; match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_005154431.1	identified by similarity to EGAD:31037; match to protein family HMM PF00005
YP_005154432.1	catalyzes the formation of catechol from salicylate
YP_005154433.1	identified by similarity to GP:15074414
YP_005154434.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_005154435.1	identified by match to protein family HMM PF02541
YP_005154436.1	identified by similarity to GP:17739552; match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388
YP_005154437.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_005154438.1	identified by similarity to GP:14027664
YP_005154440.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_005154441.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_005154442.1	identified by similarity to OMNI:NTL02ML6587
YP_005154443.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_005154444.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_005154445.1	identified by similarity to OMNI:NTL02ML6608
YP_005154446.1	identified by match to protein family HMM PF01047
YP_005154448.1	identified by match to protein family HMM PF01471; match to protein family HMM TIGR01409
YP_005154451.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_005154452.1	identified by similarity to GP:14027700; match to protein family HMM PF03477; match to protein family HMM TIGR00244
YP_005154453.1	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326
YP_005154454.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_005154455.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_005154456.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_005154457.1	pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient
YP_005154458.1	identified by similarity to GP:15074151; match to protein family HMM PF04355
YP_005154459.1	identified by similarity to OMNI:NTL02ML6629; match to protein family HMM PF03981
YP_005154460.1	identified by similarity to GP:15074153
YP_005154462.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_005154463.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_005154464.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_005154465.1	identified by similarity to OMNI:NTL02ML6634
YP_005154466.1	identified by similarity to SP:P30743; match to protein family HMM PF00893
YP_005154467.1	identified by match to protein family HMM PF02397
YP_005154468.1	identified by similarity to GP:14027725
YP_005154469.1	identified by similarity to EGAD:19692; match to protein family HMM PF02563
YP_005154472.1	identified by similarity to OMNI:NTL02ML6654
YP_005154473.1	identified by match to protein family HMM PF02628
YP_005154474.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis
YP_005154475.1	catalyzes the formation of putrescine from agmatine
YP_005154476.1	forms a direct contact with the tRNA during translation
YP_005154477.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_005154478.1	identified by similarity to OMNI:NTL02ML6663; match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_005154479.1	catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol
YP_005154488.1	Catalyzes the transfer of electrons from NADH to quinone
YP_005154489.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_005154490.1	Catalyzes the transfer of electrons from NADH to quinone
YP_005154491.1	Catalyzes the transfer of electrons from NADH to quinone
YP_005154492.1	Catalyzes the transfer of electrons from NADH to quinone
YP_005154493.1	part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase
YP_005154494.1	Catalyzes the transfer of electrons from NADH to quinone
YP_005154495.1	Catalyzes the transfer of electrons from NADH to quinone
YP_005154496.1	Catalyzes the transfer of electrons from NADH to quinone
YP_005154497.1	Catalyzes the transfer of electrons from NADH to quinone
YP_005154498.1	Catalyzes the transfer of electrons from NADH to quinone
YP_005154499.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_005154500.1	Catalyzes the transfer of electrons from NADH to quinone
YP_005154501.1	Catalyzes the transfer of electrons from NADH to quinone
YP_005154502.1	catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon
YP_005154503.1	identified by match to protein family HMM PF00753
YP_005154504.1	identified by match to protein family HMM PF00903
YP_005154505.1	identified by similarity to OMNI:NTL02ML1060
YP_005154508.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_005154509.1	identified by match to protein family HMM PF02687
YP_005154510.1	identified by similarity to SP:P75957; match to protein family HMM PF00005
YP_005154511.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_005154512.1	identified by similarity to OMNI:NTL02ML0034
YP_005154514.1	identified by similarity to OMNI:NTL02ML1990
YP_005154516.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_005154517.1	identified by similarity to OMNI:NTL02ML0037
YP_005154518.1	identified by match to protein family HMM PF00459
YP_005154519.1	identified by match to protein family HMM PF00083; match to protein family HMM TIGR00710
YP_005154521.1	identified by match to protein family HMM TIGR00365
YP_005154522.1	identified by match to protein family HMM PF01722
YP_005154523.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_005154525.1	identified by match to protein family HMM PF00043
YP_005154526.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_005154527.1	With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway
YP_005154528.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_005154529.1	identified by similarity to OMNI:NTL02ML0054
YP_005154530.1	identified by similarity to EGAD:11526; match to protein family HMM PF03328
YP_005154531.1	identified by similarity to GP:15074696
YP_005154534.1	identified by match to protein family HMM PF00903
YP_005154535.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_005154536.1	identified by similarity to EGAD:101737; match to protein family HMM PF00834; match to protein family HMM TIGR01163
YP_005154537.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
YP_005154538.1	identified by match to protein family HMM PF00107
YP_005154539.1	FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.
YP_005154540.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_005154541.1	Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides
YP_005154542.1	identified by similarity to OMNI:NTL02ML6731; match to protein family HMM PF05838
YP_005154543.1	identified by similarity to EGAD:30590; match to protein family HMM PF01263
YP_005154544.1	identified by similarity to SP:P37647; match to protein family HMM PF00294
YP_005154545.1	identified by similarity to GP:15141057
YP_005154546.1	identified by match to protein family HMM PF01979
YP_005154547.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_005154548.1	identified by similarity to OMNI:CC1306; match to protein family HMM PF01207; match to protein family HMM TIGR00742
YP_005154549.1	identified by similarity to OMNI:NTL02ML0447; match to protein family HMM PF00077
YP_005154550.1	identified by similarity to OMNI:NTL02ML0446
YP_005154551.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_005154552.1	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole
YP_005154553.1	identified by match to protein family HMM PF01037
YP_005154554.1	identified by similarity to GP:15074814
YP_005154555.1	identified by match to protein family HMM PF00565
YP_005154557.1	identified by similarity to EGAD:35423
YP_005154558.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_005154559.1	identified by similarity to GP:15075908; match to protein family HMM PF04391
YP_005154560.1	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049
YP_005154561.1	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_005154562.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_005154563.1	identified by similarity to OMNI:NTL02ML0862
YP_005154565.1	identified by similarity to GP:14021929; match to protein family HMM PF02616
YP_005154566.1	identified by similarity to OMNI:NTL02ML0859; match to protein family HMM PF04079; match to protein family HMM TIGR00281
YP_005154567.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_005154568.1	mediates the export of protein precursors bearing twin-arginine signal peptides
YP_005154569.1	identified by similarity to EGAD:10132; match to protein family HMM PF00902; match to protein family HMM TIGR00945
YP_005154570.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_005154571.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_005154572.1	catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins
YP_005154573.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_005154574.1	identified by similarity to OMNI:NTL02ML0849; match to protein family HMM PF05673
YP_005154575.1	identified by similarity to SP:Q9ZG87; match to protein family HMM PF02699; match to protein family HMM TIGR00739
YP_005154576.1	identified by similarity to GP:3220156; match to protein family HMM PF02355; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966; match to protein family HMM TIGR01129
YP_005154577.1	identified by similarity to GP:14021915; match to protein family HMM PF04635
YP_005154578.1	identified by similarity to OMNI:NTL02ML0845
YP_005154579.1	TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine
YP_005154580.1	identified by similarity to GP:15074478
YP_005154581.1	identified by similarity to OMNI:NTL02ML0840
YP_005154583.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_005154584.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_005154585.1	identified by match to protein family HMM PF00583
YP_005154587.1	Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis
YP_005154589.1	identified by similarity to GP:15074249
YP_005154590.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_005154591.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_005154592.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_005154593.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_005154594.1	identified by match to protein family HMM PF01323
YP_005154595.1	identified by similarity to GP:14021229; match to protein family HMM PF01435
YP_005154596.1	identified by match to protein family HMM PF00155
YP_005154597.1	identified by match to protein family HMM TIGR00757
YP_005154600.1	identified by similarity to OMNI:NTL02ML0166; match to protein family HMM PF01520
YP_005154601.1	identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_005154603.1	identified by similarity to EGAD:46813
YP_005154606.1	identified by similarity to GP:15074676; match to protein family HMM PF04305
YP_005154607.1	identified by similarity to EGAD:18740; match to protein family HMM PF00578
YP_005154608.1	identified by similarity to GP:14021072
YP_005154609.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_005154610.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_005154611.1	identified by similarity to GP:12024949; match to protein family HMM PF00893
YP_005154612.1	identified by similarity to GP:15074671
YP_005154613.1	identified by similarity to EGAD:14639; match to protein family HMM PF00266
YP_005154614.1	with SufCD activates cysteine desulfurase SufS
YP_005154615.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978
YP_005154616.1	identified by similarity to OMNI:NTL02ML0017; match to protein family HMM PF01458; match to protein family HMM TIGR01981
YP_005154617.1	identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979
YP_005154618.1	identified by similarity to GP:14021086; match to protein family HMM PF01883
YP_005154619.1	identified by match to protein family HMM PF00535
YP_005154620.1	catalyzes the phosphorylation of NAD to NADP
YP_005154621.1	identified by similarity to EGAD:20681; match to protein family HMM PF00270; match to protein family HMM PF00271
YP_005154622.1	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049
YP_005154623.1	identified by similarity to OMNI:NTL02ML0072
YP_005154625.1	identified by match to protein family HMM PF00403
YP_005154627.1	identified by similarity to OMNI:NTL02ML0876; match to protein family HMM PF01135
YP_005154628.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844
YP_005154629.1	identified by similarity to GP:14021943
YP_005154631.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_005154632.1	identified by match to protein family HMM PF03446
YP_005154633.1	identified by match to protein family HMM PF02798
YP_005154634.1	identified by similarity to EGAD:6543; match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_005154635.1	identified by similarity to EGAD:8421; match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_005154637.1	identified by similarity to EGAD:37042; match to protein family HMM PF00497
YP_005154638.1	identified by similarity to SP:P32125; match to protein family HMM PF03205; match to protein family HMM TIGR00176
YP_005154639.1	identified by similarity to SP:P32173
YP_005154640.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_005154641.1	identified by similarity to OMNI:NTL02ML0426
YP_005154642.1	identified by match to protein family HMM PF01360
YP_005154643.1	identified by similarity to SP:P00923; match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723
YP_005154644.1	identified by similarity to GP:15156702
YP_005154646.1	identified by similarity to GP:15159178; match to protein family HMM PF04226
YP_005154648.1	identified by match to protein family HMM PF00589
YP_005154653.1	identified by similarity to EGAD:151783
YP_005154654.1	identified by similarity to EGAD:176501
YP_005154656.1	identified by similarity to GP:15073548
YP_005154657.1	identified by similarity to GP:15073547
YP_005154658.1	identified by similarity to EGAD:46813
YP_005154661.1	identified by similarity to GP:5616097
YP_005154662.1	identified by similarity to EGAD:103475; match to protein family HMM PF00534
YP_005154664.1	identified by similarity to OMNI:PG0293; match to protein family HMM PF05838
YP_005154669.1	identified by similarity to EGAD:91898; match to protein family HMM PF03960; match to protein family HMM TIGR00014
YP_005154670.1	identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413
YP_005154671.1	identified by match to protein family HMM PF00768
YP_005154672.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_005154673.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_005154675.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_005154676.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_005154677.1	identified by similarity to GP:15074532; match to protein family HMM PF00753
YP_005154678.1	responsible for transport of beta-1,2-glucans from the cytoplasm to periplasm; inner membrane ABC transporter permease component; Cgt; ChvA; NdvA
YP_005154680.1	identified by similarity to EGAD:7861; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_005154681.1	identified by match to protein family HMM PF00892
YP_005154682.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_005154683.1	identified by similarity to GP:15156553
YP_005154684.1	identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653
YP_005154685.1	identified by similarity to EGAD:35417; match to protein family HMM PF00543
YP_005154686.1	identified by similarity to OMNI:CC1965; match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197
YP_005154688.1	catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate
YP_005154690.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_005154691.1	identified by similarity to OMNI:NTL02ML0413
YP_005154692.1	catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense
YP_005154693.1	identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358
YP_005154694.1	identified by similarity to SP:P00556; match to protein family HMM PF01219
YP_005154695.1	NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_005154696.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_005154697.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_005154698.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_005154699.1	identified by match to protein family HMM PF01740; match to protein family HMM PF02405
YP_005154700.1	identified by match to protein family HMM PF00005
YP_005154701.1	identified by match to protein family HMM PF02470
YP_005154702.1	identified by similarity to GP:15156733; match to protein family HMM PF03886
YP_005154704.1	identified by similarity to GP:15074750; match to protein family HMM TIGR01369; match to protein family HMM TIGR01612
YP_005154706.1	identified by similarity to EGAD:5699; match to protein family HMM PF00111
YP_005154707.1	identified by similarity to OMNI:NTL02ML0625
YP_005154708.1	identified by similarity to SP:P28822; match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_005154709.1	identified by similarity to EGAD:14090; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526
YP_005154710.1	identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498
YP_005154711.1	identified by similarity to GP:14021684
YP_005154712.1	identified by similarity to OMNI:NTL02ML0615; match to protein family HMM PF05128; match to protein family HMM TIGR01620
YP_005154713.1	identified by similarity to GP:14021682; match to protein family HMM PF04317
YP_005154714.1	identified by similarity to GP:14021681
YP_005154715.1	identified by similarity to EGAD:19456; match to protein family HMM PF01258
YP_005154718.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_005154719.1	identified by similarity to GP:15140178; match to protein family HMM PF03486
YP_005154720.1	identified by match to protein family HMM PF00144
YP_005154721.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_005154723.1	identified by match to protein family HMM PF00293
YP_005154724.1	catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively
YP_005154725.1	identified by similarity to OMNI:NTL02ML0109; match to protein family HMM PF00582
YP_005154726.1	identified by match to protein family HMM PF00994
YP_005154727.1	stationary phase protein that binds TrpR repressor
YP_005154729.1	catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic
YP_005154730.1	identified by similarity to GP:14021336; match to protein family HMM PF00270; match to protein family HMM PF00271
YP_005154731.1	CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis
YP_005154732.1	identified by similarity to GP:15156264
YP_005154733.1	identified by similarity to GP:15074554; match to protein family HMM PF00581
YP_005154734.1	identified by match to protein family HMM PF00583
YP_005154735.1	identified by similarity to OMNI:NTL02ML3729; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_005154736.1	identified by match to protein family HMM PF02550
YP_005154737.1	identified by match to protein family HMM PF00083; match to protein family HMM TIGR00711
YP_005154738.1	identified by match to protein family HMM PF00529
YP_005154739.1	identified by similarity to SP:P42327; match to protein family HMM PF00107
YP_005154740.1	identified by similarity to OMNI:NTL01XF00221; match to protein family HMM PF00557
YP_005154741.1	identified by similarity to GP:15157001; match to protein family HMM PF00515
YP_005154742.1	identified by similarity to GP:2708271; match to protein family HMM PF01758
YP_005154744.1	identified by similarity to EGAD:45971; match to protein family HMM PF01370; match to protein family HMM TIGR01179
YP_005154745.1	functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era
YP_005154746.1	identified by similarity to OMNI:NTL02ML0717
YP_005154747.1	identified by match to protein family HMM PF00881
YP_005154748.1	identified by similarity to OMNI:NTL02ML0719
YP_005154749.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_005154750.1	identified by match to protein family HMM PF00768
YP_005154751.1	identified by similarity to OMNI:NTL02ML0724; match to protein family HMM PF01809; match to protein family HMM TIGR00278
YP_005154752.1	identified by match to protein family HMM PF01592
YP_005154753.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_005154754.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_005154755.1	identified by similarity to OMNI:NTL02ML0729; match to protein family HMM PF01734
YP_005154756.1	identified by match to protein family HMM PF00589
YP_005154760.1	identified by match to protein family HMM PF00239
YP_005154761.1	identified by match to protein family HMM PF02498
YP_005154762.1	identified by match to protein family HMM PF02515
YP_005154763.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771
YP_005154764.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_005154765.1	identified by match to protein family HMM PF00296
YP_005154766.1	identified by match to protein family HMM PF00873
YP_005154767.1	identified by similarity to OMNI:VC0165; match to protein family HMM TIGR01730
YP_005154768.1	identified by match to protein family HMM PF00440
YP_005154769.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_005154770.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_005154771.1	identified by similarity to OMNI:NTL02ML0580; match to protein family HMM PF00160
YP_005154772.1	identified by similarity to OMNI:CC1584; match to protein family HMM PF00160
YP_005154773.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_005154775.1	negatively supercoils closed circular double-stranded DNA
YP_005154776.1	identified by similarity to OMNI:NTL02ML0590; match to protein family HMM PF01914; match to protein family HMM TIGR00427
YP_005154778.1	identified by match to protein family HMM PF00392
YP_005154780.1	identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621
YP_005154782.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_005154783.1	identified by similarity to EGAD:8582; match to protein family HMM PF00216
YP_005154784.1	identified by similarity to EGAD:18728; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763
YP_005154786.1	binds and unfolds substrates as part of the ClpXP protease
YP_005154787.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_005154789.1	Stimulates the elongation of poly(A) tails
YP_005154792.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_005154793.1	identified by similarity to EGAD:5624; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199
YP_005154794.1	identified by similarity to EGAD:10502; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_005154795.1	identified by similarity to EGAD:19665; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01818
YP_005154796.1	identified by similarity to EGAD:22187; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_005154797.1	identified by similarity to EGAD:30550; match to protein family HMM PF01207; match to protein family HMM TIGR00737
YP_005154798.1	bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations
YP_005154799.1	identified by similarity to GP:15074388; match to protein family HMM PF02464; match to protein family HMM TIGR00199
YP_005154800.1	identified by match to protein family HMM PF00106
YP_005154801.1	identified by similarity to OMNI:NTL02ML0302; match to protein family HMM PF03654
YP_005154802.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_005154804.1	E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_005154805.1	identified by similarity to SP:Q9R9N3; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01349
YP_005154806.1	catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase
YP_005154807.1	identified by similarity to SP:Q9R9N5; match to protein family HMM PF00676
YP_005154808.1	identified by similarity to OMNI:NTL02ML0293; match to protein family HMM PF04977
YP_005154809.1	identified by similarity to OMNI:CC1925
YP_005154810.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_005154811.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_005154812.1	CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_005154814.1	identified by similarity to GP:15157507; match to protein family HMM PF03734
YP_005154815.1	identified by match to protein family HMM PF03840
YP_005154816.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_005154818.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_005154819.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_005154820.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_005154821.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_005154822.1	Represses a number of genes involved in the response to DNA damage
YP_005154823.1	identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360
YP_005154825.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_005154826.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_005154827.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_005154828.1	identified by similarity to GP:15074439
YP_005154829.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_005154830.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_005154831.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_005154832.1	identified by match to protein family HMM PF01103
YP_005154834.1	identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054
YP_005154835.1	identified by similarity to EGAD:108469; match to protein family HMM PF01148
YP_005154836.1	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055
YP_005154837.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_005154838.1	Catalyzes the phosphorylation of UMP to UDP
YP_005154839.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_005154840.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_005154841.1	identified by similarity to GP:9107039
YP_005154842.1	identified by similarity to OMNI:NTL02ML0524
YP_005154843.1	identified by similarity to OMNI:NTL02ML0525; match to protein family HMM PF01042
YP_005154844.1	identified by similarity to EGAD:9938; match to protein family HMM PF03009
YP_005154845.1	identified by similarity to OMNI:NTL02ML0527; match to protein family HMM PF04339
YP_005154846.1	identified by match to protein family HMM PF01230
YP_005154847.1	identified by similarity to EGAD:17776; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM TIGR01967
YP_005154848.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_005154850.1	identified by match to protein family HMM PF00768
YP_005154851.1	identified by similarity to GP:15074343
YP_005154852.1	identified by similarity to OMNI:NTL02ML0534
YP_005154853.1	identified by similarity to SP:P42630; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720
YP_005154855.1	identified by similarity to OMNI:NTL02ML0537; match to protein family HMM PF02698
YP_005154856.1	identified by similarity to OMNI:NTL02ML1038
YP_005154857.1	identified by match to protein family HMM PF00376
YP_005154859.1	identified by similarity to GP:15141218
YP_005154860.1	identified by similarity to GP:15156035
YP_005154861.1	NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis
YP_005154864.1	identified by similarity to OMNI:CC2122
YP_005154865.1	identified by similarity to GP:15159740; match to protein family HMM PF01381
YP_005154866.1	identified by similarity to EGAD:2033; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_005154867.1	MDM; functions in conversion of succinate to propionate
YP_005154868.1	identified by similarity to GP:15140764
YP_005154869.1	identified by similarity to OMNI:NTL01BH2941; match to protein family HMM TIGR02123
YP_005154871.1	identified by similarity to EGAD:7185; match to protein family HMM TIGR02122
YP_005154872.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_005154873.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050
YP_005154874.1	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382
YP_005154875.1	identified by similarity to OMNI:NTL03PA04336
YP_005154876.1	Converts isocitrate to alpha ketoglutarate
YP_005154877.1	identified by similarity to SP:P00634; match to protein family HMM PF00245
YP_005154878.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_005154879.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_005154881.1	identified by match to protein family HMM PF00691
YP_005154882.1	identified by similarity to GP:15075335
YP_005154883.1	identified by match to protein family HMM PF00004
YP_005154884.1	identified by similarity to EGAD:18959; match to protein family HMM PF00089; match to protein family HMM PF00595
YP_005154885.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_005154886.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_005154887.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_005154888.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_005154889.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_005154890.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_005154891.1	late assembly protein
YP_005154892.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_005154893.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_005154894.1	binds 5S rRNA along with protein L5 and L25
YP_005154895.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_005154896.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_005154897.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_005154898.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_005154899.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_005154900.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_005154901.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_005154902.1	one of the stabilizing components for the large ribosomal subunit
YP_005154903.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_005154904.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_005154905.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_005154906.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_005154907.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_005154908.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_005154909.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_005154910.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_005154911.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_005154912.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_005154913.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_005154914.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_005154915.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_005154918.1	identified by similarity to GP:15074283
YP_005154919.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_005154920.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_005154922.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_005154923.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_005154924.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_005154925.1	binds directly to 23S ribosomal RNA
YP_005154926.1	Modulates Rho-dependent transcription termination
YP_005154927.1	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_005154928.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_005154931.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186
YP_005154932.1	identified by match to protein family HMM PF01694
YP_005154934.1	identified by similarity to OMNI:NTL02ML0144
YP_005154935.1	identified by similarity to OMNI:NTL02ML0142
YP_005154936.1	identified by similarity to OMNI:NTL02ML0140; match to protein family HMM PF00132
YP_005154937.1	identified by similarity to GP:15074417
YP_005154938.1	identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172
YP_005154940.1	identified by match to protein family HMM PF00561
YP_005154941.1	identified by similarity to GP:14021198; match to protein family HMM PF02643
YP_005154942.1	identified by match to protein family HMM PF00313
YP_005154944.1	identified by match to protein family HMM PF00903
YP_005154945.1	identified by similarity to OMNI:NT01MC4682
YP_005154946.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644
YP_005154947.1	identified by similarity to EGAD:14437; match to protein family HMM PF01820; match to protein family HMM TIGR01205
YP_005154949.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_005154950.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_005154951.1	identified by match to protein family HMM PF00155
YP_005154953.1	identified by similarity to GP:14021808
YP_005154954.1	identified by similarity to OMNI:NTL02ML0128
YP_005154957.1	Regulatory factor involved in maltose metabolism
YP_005154958.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_005154959.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_005154960.1	identified by similarity to GP:14018349
YP_005154961.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01468
YP_005154962.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460
YP_005154963.1	catalyzes the interconversion of precorrin-8X and hydrogenobyrinate
YP_005154964.1	catalyzes the formation of precorrin-3 from precorrin-2
YP_005154965.1	identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466
YP_005154968.1	identified by match to protein family HMM PF01613
YP_005154969.1	identified by similarity to SP:P02917; match to protein family HMM PF01094
YP_005154970.1	CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
YP_005154971.1	identified by similarity to SP:P21633; match to protein family HMM PF00155
YP_005154972.1	responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid
YP_005154973.1	identified by similarity to SP:P21631; match to protein family HMM PF00590; match to protein family HMM TIGR01469
YP_005154974.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_005154975.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_005154976.1	identified by similarity to SP:P21922; match to protein family HMM PF00590; match to protein family HMM TIGR01465
YP_005154978.1	identified by similarity to OMNI:NTL02ML0945
YP_005154979.1	identified by similarity to OMNI:NTL02ML0946; match to protein family HMM PF01925
YP_005154980.1	identified by match to protein family HMM PF00892
YP_005154981.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_005154982.1	with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism
YP_005154983.1	identified by match to protein family HMM PF02492
YP_005154984.1	catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP
YP_005154985.1	identified by similarity to OMNI:NTL02ML1033
YP_005154986.1	identified by similarity to GP:14022104
YP_005154987.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_005154989.1	identified by match to protein family HMM PF03446; match to protein family HMM TIGR01692
YP_005154991.1	identified by similarity to OMNI:CC3473
YP_005154993.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_005154994.1	identified by similarity to OMNI:NTL02ML1001
YP_005154996.1	part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_005154997.1	identified by match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932
YP_005154999.1	identified by similarity to GP:15074696
YP_005155000.1	identified by similarity to SP:P16702; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140
YP_005155001.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139
YP_005155002.1	identified by similarity to SP:P06997; match to protein family HMM PF01547; match to protein family HMM TIGR00971
YP_005155004.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741
YP_005155005.1	identified by match to protein family HMM PF00597
YP_005155007.1	identified by similarity to EGAD:154080; match to protein family HMM PF00036
YP_005155008.1	identified by match to protein family HMM PF05025
YP_005155009.1	identified by similarity to OMNI:NTL02ML3842; match to protein family HMM PF00106
YP_005155010.1	identified by match to protein family HMM PF00005
YP_005155011.1	identified by similarity to GP:6273663; match to protein family HMM PF02653
YP_005155013.1	identified by similarity to GP:6273662; match to protein family HMM PF00532
YP_005155014.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_005155015.1	identified by similarity to SP:P15031; match to protein family HMM PF00005
YP_005155016.1	identified by match to protein family HMM PF01032
YP_005155017.1	identified by similarity to PIR:S54437; match to protein family HMM PF01497
YP_005155018.1	identified by similarity to SP:P06129; match to protein family HMM PF00593
YP_005155021.1	identified by match to protein family HMM PF00005
YP_005155022.1	identified by match to protein family HMM PF00529
YP_005155025.1	identified by similarity to OMNI:NTL02EC1981; match to protein family HMM PF02638
YP_005155027.1	UreA, with UreB and UreC, catalyzes the hydrolysis of urea to ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter
YP_005155028.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) does not seem to be involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo
YP_005155029.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_005155030.1	identified by similarity to SP:Q9ZFR8; match to protein family HMM PF02814; match to protein family HMM PF05194
YP_005155031.1	identified by similarity to EGAD:8726; match to protein family HMM PF01730
YP_005155032.1	identified by similarity to SP:P42871; match to protein family HMM PF01495; match to protein family HMM TIGR00101
YP_005155033.1	identified by similarity to EGAD:20614; match to protein family HMM PF01774
YP_005155034.1	identified by similarity to GP:1905970; match to protein family HMM PF03253
YP_005155036.1	catalyzes the ATP-dependent transport of cobalt
YP_005155037.1	identified by similarity to EGAD:28613
YP_005155038.1	identified by similarity to GP:6138845; match to protein family HMM PF02361
YP_005155039.1	identified by match to protein family HMM PF00005
YP_005155040.1	identified by match to protein family HMM PF02537; match to protein family HMM PF03625
YP_005155041.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_005155043.1	identified by similarity to EGAD:6639
YP_005155044.1	identified by similarity to EGAD:38480; match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_005155046.1	identified by similarity to GP:3236220
YP_005155047.1	identified by match to protein family HMM PF00155
YP_005155049.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_005155050.1	identified by match to protein family HMM PF00440
YP_005155052.1	identified by similarity to SP:P30016; match to protein family HMM PF02705
YP_005155054.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_005155056.1	identified by similarity to OMNI:NTL02ML1120
YP_005155057.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_005155058.1	catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive
YP_005155059.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_005155060.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488
YP_005155061.1	identified by similarity to OMNI:CC1477; match to protein family HMM PF03486; match to protein family HMM TIGR00275
YP_005155063.1	identified by similarity to OMNI:CC2758; match to protein family HMM PF00089; match to protein family HMM PF00595
YP_005155064.1	identified by similarity to GP:14022214
YP_005155065.1	identified by similarity to EGAD:9363; match to protein family HMM PF01145; match to protein family HMM TIGR01932
YP_005155066.1	identified by similarity to SP:Q9KV09; match to protein family HMM PF01145; match to protein family HMM TIGR01933
YP_005155067.1	identified by match to protein family HMM PF00186
YP_005155068.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_005155069.1	identified by similarity to OMNI:NTL02ML1156
YP_005155070.1	identified by match to protein family HMM PF00083; match to protein family HMM TIGR00710
YP_005155072.1	identified by match to protein family HMM PF00440
YP_005155073.1	identified by similarity to OMNI:NTL02ML1160
YP_005155075.1	identified by similarity to OMNI:NTL02ML1161
YP_005155076.1	identified by similarity to OMNI:NTL02ML1162
YP_005155077.1	identified by similarity to OMNI:NTL02ML1167; match to protein family HMM PF05170
YP_005155079.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_005155080.1	identified by similarity to OMNI:NTL02ML3966
YP_005155081.1	identified by similarity to OMNI:NTL01XF00279
YP_005155082.1	identified by similarity to EGAD:14237; match to protein family HMM PF00580
YP_005155083.1	identified by similarity to GP:14022272
YP_005155084.1	identified by similarity to OMNI:NTL02ML1201; match to protein family HMM PF00132
YP_005155085.1	identified by match to protein family HMM PF02630
YP_005155086.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_005155087.1	identified by similarity to OMNI:NTL02ML1206; match to protein family HMM PF00557
YP_005155088.1	identified by similarity to GP:14022279
YP_005155089.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_005155090.1	identified by similarity to SP:P05824; match to protein family HMM TIGR00634
YP_005155091.1	identified by similarity to EGAD:40678; match to protein family HMM PF03696
YP_005155093.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_005155094.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_005155095.1	identified by similarity to SP:O30994; match to protein family HMM PF02491; match to protein family HMM TIGR01174
YP_005155096.1	identified by similarity to SP:O30993; match to protein family HMM PF03799
YP_005155097.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_005155098.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_005155099.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_005155100.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_005155101.1	identified by similarity to EGAD:20048; match to protein family HMM PF01098
YP_005155102.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_005155103.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_005155104.1	identified by similarity to EGAD:15807; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143
YP_005155105.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_005155106.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_005155107.1	identified by similarity to GP:14022298
YP_005155108.1	identified by similarity to GP:15075206; match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_005155110.1	identified by similarity to GP:17740175; match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_005155112.1	identified by match to protein family HMM PF01464
YP_005155113.1	identified by match to protein family HMM PF01471; match to protein family HMM PF01510
YP_005155114.1	identified by match to protein family HMM PF00226
YP_005155116.1	identified by match to protein family HMM PF01183
YP_005155117.1	identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676
YP_005155118.1	identified by match to protein family HMM PF01022; match to protein family HMM PF01209
YP_005155119.1	identified by similarity to OMNI:NTL02ML1250
YP_005155120.1	identified by match to protein family HMM PF00083; match to protein family HMM TIGR00883
YP_005155122.1	identified by similarity to SP:P76145
YP_005155123.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_005155125.1	identified by similarity to OMNI:NTL02ML1266
YP_005155127.1	identified by similarity to OMNI:NTL01PM1376
YP_005155128.1	identified by match to protein family HMM PF00355
YP_005155129.1	identified by similarity to EGAD:91746; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_005155130.1	identified by similarity to SP:P16680; match to protein family HMM PF03831
YP_005155131.1	identified by similarity to SP:P21369; match to protein family HMM PF00857
YP_005155132.1	identified by match to protein family HMM PF04332
YP_005155135.1	identified by match to protein family HMM PF02275
YP_005155136.1	identified by similarity to GP:14523684
YP_005155141.1	identified by match to protein family HMM PF00589
YP_005155142.1	identified by similarity to EGAD:40996; match to protein family HMM PF04402
YP_005155144.1	identified by similarity to OMNI:NTL02ML1869; match to protein family HMM PF05779
YP_005155145.1	identified by similarity to OMNI:NTL02ML1900
YP_005155146.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_005155147.1	synthesizes RNA primers at the replication forks
YP_005155148.1	identified by match to protein family HMM PF02690
YP_005155149.1	identified by similarity to GP:15075342; match to protein family HMM PF02637
YP_005155150.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_005155152.1	identified by similarity to GP:15074511; match to protein family HMM PF04228
YP_005155153.1	identified by similarity to GP:15157321
YP_005155154.1	identified by similarity to GP:15157322; match to protein family HMM PF04397
YP_005155155.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_005155157.1	identified by similarity to GP:2808503
YP_005155158.1	identified by match to protein family HMM PF00293
YP_005155159.1	identified by similarity to SP:Q9Z3S6; match to protein family HMM PF00313
YP_005155160.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_005155162.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_005155165.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_005155166.1	identified by similarity to SP:P09625; match to protein family HMM PF00070; match to protein family HMM TIGR01292
YP_005155167.1	identified by similarity to GP:3288671; match to protein family HMM PF02386
YP_005155169.1	identified by similarity to SP:P56901; match to protein family HMM PF01037
YP_005155170.1	identified by similarity to SP:O68547; match to protein family HMM PF00534
YP_005155171.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_005155172.1	identified by similarity to EGAD:91665
YP_005155174.1	identified by match to protein family HMM PF00892
YP_005155175.1	identified by match to protein family HMM PF04342
YP_005155176.1	identified by similarity to GP:15074829
YP_005155177.1	identified by match to protein family HMM PF03061
YP_005155178.1	identified by similarity to GP:15162152
YP_005155179.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_005155180.1	identified by match to protein family HMM PF00313
YP_005155182.1	identified by similarity to GP:15075354
YP_005155183.1	identified by match to protein family HMM PF00753
YP_005155186.1	identified by match to protein family HMM PF01047
YP_005155187.1	identified by similarity to EGAD:19467; match to protein family HMM PF00072; match to protein family HMM PF00486
YP_005155188.1	identified by similarity to EGAD:163236; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_005155190.1	identified by similarity to SP:P37584; match to protein family HMM PF01588
YP_005155191.1	identified by similarity to OMNI:NTL02ML2065
YP_005155192.1	identified by similarity to GP:15075365; match to protein family HMM PF04380
YP_005155194.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_005155195.1	identified by similarity to OMNI:NTL02ML2069; match to protein family HMM PF02636
YP_005155196.1	identified by similarity to OMNI:NTL02ML2070; match to protein family HMM PF02578; match to protein family HMM TIGR00726
YP_005155197.1	identified by match to protein family HMM PF00557
YP_005155198.1	identified by similarity to GP:15075370
YP_005155199.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_005155200.1	identified by similarity to GP:15074722
YP_005155201.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_005155202.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_005155203.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_005155204.1	identified by match to protein family HMM PF01575
YP_005155205.1	identified by match to protein family HMM PF01575
YP_005155206.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_005155207.1	identified by match to protein family HMM PF02167
YP_005155208.1	identified by similarity to EGAD:46867; match to protein family HMM PF00032; match to protein family HMM PF00033
YP_005155209.1	identified by similarity to EGAD:9907; match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416
YP_005155210.1	identified by match to protein family HMM PF00588
YP_005155212.1	identified by similarity to GP:15074760
YP_005155213.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_005155214.1	identified by match to protein family HMM PF00583
YP_005155215.1	identified by match to protein family HMM PF01743
YP_005155216.1	identified by match to protein family HMM PF00293
YP_005155217.1	identified by similarity to OMNI:NTL02ML2109
YP_005155218.1	identified by similarity to GP:2689172
YP_005155219.1	identified by similarity to OMNI:NTL02ML2111; match to protein family HMM PF01882
YP_005155221.1	identified by similarity to OMNI:NTL02ML2113
YP_005155222.1	identified by match to protein family HMM PF00583
YP_005155224.1	identified by match to protein family HMM PF03922
YP_005155225.1	identified by match to protein family HMM PF00293
YP_005155226.1	identified by similarity to GP:14023230; match to protein family HMM PF00149
YP_005155228.1	identified by match to protein family HMM PF00682; match to protein family HMM TIGR00970
YP_005155230.1	identified by similarity to GP:14023215; match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_005155232.1	trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II
YP_005155233.1	identified by similarity to SP:P19494; match to protein family HMM PF01037
YP_005155234.1	identified by match to protein family HMM PF01047
YP_005155235.1	identified by similarity to GP:17430574
YP_005155236.1	identified by similarity to GP:14027266
YP_005155237.1	identified by similarity to OMNI:NTL02ML2131
YP_005155241.1	identified by similarity to GP:19880073; match to protein family HMM PF04069
YP_005155242.1	identified by similarity to GP:17982347; match to protein family HMM PF00528
YP_005155243.1	identified by similarity to SP:P46920; match to protein family HMM PF00005
YP_005155244.1	identified by similarity to SP:P37313; match to protein family HMM PF00005
YP_005155245.1	identified by similarity to SP:P37314; match to protein family HMM PF00005
YP_005155246.1	identified by similarity to SP:P94312; match to protein family HMM PF00528
YP_005155247.1	identified by similarity to SP:P94311; match to protein family HMM PF00528
YP_005155250.1	identified by match to protein family HMM PF01022
YP_005155251.1	identified by match to protein family HMM PF00588
YP_005155252.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_005155254.1	identified by similarity to GP:15075739
YP_005155255.1	identified by similarity to GP:15075740
YP_005155256.1	identified by similarity to GP:14023239
YP_005155257.1	identified by similarity to GP:17740928
YP_005155259.1	identified by similarity to OMNI:NTL02ML2168
YP_005155260.1	identified by similarity to EGAD:41053; match to protein family HMM PF00072; match to protein family HMM PF00486
YP_005155261.1	identified by similarity to GP:15075741
YP_005155262.1	identified by match to protein family HMM PF01041
YP_005155263.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_005155266.1	identified by match to protein family HMM PF01755
YP_005155267.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_005155269.1	identified by similarity to EGAD:20142; match to protein family HMM PF05170
YP_005155270.1	identified by similarity to GP:16502083; match to protein family HMM PF00528
YP_005155271.1	identified by similarity to SP:P23860; match to protein family HMM PF00528
YP_005155272.1	identified by similarity to SP:P31134; match to protein family HMM PF00005; match to protein family HMM TIGR01187
YP_005155273.1	identified by similarity to GP:15979381; match to protein family HMM PF01547
YP_005155274.1	identified by match to protein family HMM PF01381
YP_005155275.1	Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates
YP_005155276.1	identified by similarity to OMNI:NTL02ML5126
YP_005155279.1	Acts on the hydroxyl group at position 7 of the steroid frame
YP_005155280.1	identified by similarity to EGAD:23950; match to protein family HMM PF00106
YP_005155282.1	identified by similarity to EGAD:10584; match to protein family HMM PF01914
YP_005155283.1	identified by similarity to EGAD:150060; match to protein family HMM PF01389
YP_005155288.1	identified by match to protein family HMM PF00106
YP_005155289.1	identified by similarity to OMNI:NTL02ML0801; match to protein family HMM PF00532
YP_005155292.1	identified by similarity to SP:P04984; match to protein family HMM PF02653
YP_005155293.1	identified by similarity to SP:P04983; match to protein family HMM PF00005
YP_005155299.1	identified by match to protein family HMM PF01614
YP_005155300.1	identified by similarity to EGAD:16804; match to protein family HMM PF00171; match to protein family HMM TIGR01780
YP_005155303.1	identified by match to protein family HMM PF01844
YP_005155306.1	identified by match to protein family HMM PF00730
YP_005155307.1	this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu
YP_005155308.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_005155309.1	identified by match to protein family HMM PF00583
YP_005155310.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters
YP_005155311.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_005155314.1	identified by similarity to SP:O30976; match to protein family HMM PF01475
YP_005155317.1	in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media
YP_005155318.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_005155319.1	identified by match to protein family HMM PF02518; match to protein family HMM PF05227
YP_005155321.1	identified by similarity to OMNI:NTL02ML2854
YP_005155322.1	identified by similarity to OMNI:NTL02ML2849; match to protein family HMM PF05239
YP_005155326.1	identified by similarity to SP:P18783; match to protein family HMM PF01618
YP_005155327.1	identified by similarity to SP:Q05606; match to protein family HMM PF02472
YP_005155328.1	identified by match to protein family HMM TIGR01352
YP_005155329.1	identified by similarity to GP:15074996
YP_005155330.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_005155331.1	identified by similarity to EGAD:46813
YP_005155332.1	identified by similarity to PIR:PN0685; match to protein family HMM PF01609
YP_005155334.1	catalyzes the formation of dUMP from dUTP
YP_005155335.1	identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199
YP_005155336.1	identified by similarity to OMNI:NTL02ML4136
YP_005155337.1	identified by similarity to GP:13932326; match to protein family HMM PF00310
YP_005155338.1	identified by match to protein family HMM PF01988
YP_005155339.1	identified by match to protein family HMM PF00083
YP_005155340.1	identified by similarity to OMNI:NTL02ML2989
YP_005155342.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_005155343.1	identified by match to protein family HMM PF00583
YP_005155344.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_005155346.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate
YP_005155347.1	identified by match to protein family HMM PF01758
YP_005155348.1	identified by similarity to GP:17742129
YP_005155349.1	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455
YP_005155350.1	identified by similarity to EGAD:13183; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM TIGR01241
YP_005155351.1	identified by similarity to GP:15075760; match to protein family HMM PF01171
YP_005155354.1	identified by similarity to EGAD:9123; match to protein family HMM PF00691
YP_005155356.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_005155357.1	identified by similarity to GP:13898975
YP_005155358.1	identified by match to protein family HMM PF02472
YP_005155359.1	identified by match to protein family HMM PF01618
YP_005155361.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_005155362.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_005155363.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_005155364.1	identified by similarity to OMNI:NTL02ML3016
YP_005155365.1	identified by similarity to GP:9961345
YP_005155366.1	catalyzes the formation of thiamine monophosphate from 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate and 4-methyl-5-(2-phosphono-oxyethyl)-thiazole
YP_005155367.1	identified by similarity to GP:14024100
YP_005155369.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_005155370.1	identified by similarity to EGAD:15335; match to protein family HMM PF00459
YP_005155372.1	identified by similarity to GP:15075801
YP_005155373.1	identified by match to protein family HMM PF00691
YP_005155374.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_005155375.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_005155376.1	identified by similarity to GP:15075777; match to protein family HMM PF01709; match to protein family HMM TIGR01033
YP_005155377.1	identified by match to protein family HMM PF02632
YP_005155378.1	identified by similarity to GP:14026938
YP_005155379.1	identified by similarity to OMNI:NTL02ML3047; match to protein family HMM PF03741
YP_005155380.1	identified by similarity to OMNI:NTL02ML3048; match to protein family HMM PF00149; match to protein family HMM TIGR00282
YP_005155381.1	identified by match to protein family HMM PF01812
YP_005155382.1	identified by similarity to OMNI:NTL02ML2891; match to protein family HMM PF05164
YP_005155385.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_005155386.1	catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate
YP_005155387.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_005155388.1	identified by similarity to GP:15075794
YP_005155389.1	identified by match to protein family HMM PF00501
YP_005155390.1	identified by similarity to GP:7206791
YP_005155394.1	identified by similarity to OMNI:CC2103; match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_005155395.1	identified by similarity to GP:15076354
YP_005155396.1	identified by match to protein family HMM PF00107
YP_005155397.1	identified by similarity to GP:15075796
YP_005155399.1	identified by match to protein family HMM PF04325
YP_005155401.1	identified by similarity to OMNI:NTL02ML2929; match to protein family HMM PF04325
YP_005155402.1	identified by similarity to SP:P09028; match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_005155403.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_005155404.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif
YP_005155405.1	identified by match to protein family HMM PF00515
YP_005155406.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_005155408.1	identified by match to protein family HMM PF05013
YP_005155411.1	identified by similarity to GP:15157929; match to protein family HMM PF00005
YP_005155414.1	identified by similarity to OMNI:NTL02ML2986; match to protein family HMM PF04263
YP_005155415.1	part of the thiamine and TPP transport system tbpA-thiPQ
YP_005155416.1	permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine
YP_005155417.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01277
YP_005155419.1	identified by match to protein family HMM PF01435
YP_005155420.1	identified by similarity to OMNI:NTL03PA02229; match to protein family HMM PF03473
YP_005155421.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma-32 is responsible for the expression of heat shock promoters; there are paralogs in Rhizobium and Sinorhizobium; the proteins in this cluster act as secondary heat shock sigma factors; the Rhizobium sigma-32 factor may also be involved in exopolysaccharide production
YP_005155424.1	identified by similarity to OMNI:NTL02ML2976; match to protein family HMM PF02559
YP_005155425.1	identified by similarity to EGAD:22805; match to protein family HMM PF00037
YP_005155427.1	identified by match to protein family HMM PF01479
YP_005155429.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_005155431.1	identified by similarity to OMNI:NTL02ML2916; match to protein family HMM PF03928
YP_005155432.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_005155433.1	glycosyltransferase; polymerizes glycan strands in the peptidoglycan
YP_005155434.1	identified by similarity to SP:Q08291; match to protein family HMM PF00348
YP_005155435.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_005155436.1	identified by similarity to SP:O86034; match to protein family HMM PF00106; match to protein family HMM TIGR01963
YP_005155437.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_005155438.1	identified by similarity to SP:P04816; match to protein family HMM PF01094
YP_005155441.1	identified by similarity to SP:P04816; match to protein family HMM PF01094
YP_005155443.1	identified by similarity to OMNI:NTL02ML3062
YP_005155444.1	identified by match to protein family HMM PF00005
YP_005155445.1	identified by match to protein family HMM PF02653
YP_005155446.1	identified by match to protein family HMM PF02653
YP_005155447.1	identified by similarity to GP:9695312; match to protein family HMM PF05544
YP_005155449.1	identified by match to protein family HMM PF00392
YP_005155450.1	identified by similarity to EGAD:16739; match to protein family HMM PF01047
YP_005155452.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_005155453.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_005155454.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_005155455.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_005155456.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_005155457.1	identified by similarity to GP:15076063
YP_005155458.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_005155459.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_005155460.1	identified by similarity to OMNI:NTL02ML3139
YP_005155461.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_005155462.1	identified by similarity to OMNI:NTL02ML3141; match to protein family HMM PF01168; match to protein family HMM TIGR00044
YP_005155464.1	identified by similarity to EGAD:13628
YP_005155465.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_005155466.1	identified by similarity to GP:14024231
YP_005155467.1	putative metalloprotease
YP_005155468.1	identified by match to protein family HMM PF01029; match to protein family HMM PF01189
YP_005155469.1	identified by similarity to GP:14024235
YP_005155470.1	involved in de novo purine biosynthesis
YP_005155473.1	identified by similarity to GP:15076346; match to protein family HMM PF05088; match to protein family HMM TIGR01612
YP_005155474.1	identified by similarity to GP:14024253
YP_005155475.1	identified by similarity to GP:14024255; match to protein family HMM PF04536
YP_005155476.1	identified by similarity to EGAD:149857; match to protein family HMM PF04011
YP_005155478.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_005155479.1	catalyzes the interconversion of chorismate to prephenate
YP_005155480.1	identified by similarity to EGAD:6526; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_005155482.1	identified by similarity to OMNI:VC1956
YP_005155483.1	identified by match to protein family HMM PF00484
YP_005155484.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal
YP_005155485.1	identified by similarity to OMNI:NTL02ML3181
YP_005155486.1	identified by similarity to SP:P28810; match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_005155487.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_005155490.1	hydrolyzes diadenosine polyphosphate
YP_005155491.1	identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225
YP_005155494.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_005155495.1	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090
YP_005155496.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_005155497.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_005155498.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_005155499.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_005155501.1	identified by match to protein family HMM PF00583
YP_005155502.1	identified by match to protein family HMM PF00583
YP_005155503.1	involved in the peptidyltransferase reaction during translation
YP_005155504.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_005155506.1	identified by match to protein family HMM PF01381
YP_005155507.1	identified by match to protein family HMM PF03591
YP_005155510.1	identified by similarity to OMNI:CC1732
YP_005155515.1	identified by match to protein family HMM PF01551
YP_005155516.1	identified by similarity to GP:15075231; match to protein family HMM PF03734
YP_005155518.1	identified by similarity to EGAD:20010; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM TIGR01369
YP_005155519.1	identified by similarity to GP:15159086
YP_005155522.1	identified by match to protein family HMM TIGR00536
YP_005155523.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_005155524.1	identified by similarity to EGAD:36619; match to protein family HMM PF00391; match to protein family HMM PF01590; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417
YP_005155525.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_005155526.1	Involved in ubiquinone biosynthesis
YP_005155527.1	identified by match to protein family HMM PF00892
YP_005155528.1	identified by similarity to GP:15159831
YP_005155529.1	identified by match to protein family HMM PF00795
YP_005155530.1	identified by similarity to SP:P37687; match to protein family HMM PF00462
YP_005155532.1	identified by similarity to EGAD:18112
YP_005155533.1	identified by similarity to GP:15075644
YP_005155535.1	identified by similarity to GP:14024323
YP_005155537.1	identified by similarity to GP:15076107
YP_005155538.1	identified by similarity to OMNI:NTL02ML3249
YP_005155539.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane
YP_005155540.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_005155541.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_005155542.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_005155543.1	unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity
YP_005155544.1	identified by similarity to GP:15157855; match to protein family HMM PF04543
YP_005155545.1	identified by similarity to GP:15076099
YP_005155546.1	identified by match to protein family HMM PF00892
YP_005155547.1	identified by similarity to EGAD:30442; match to protein family HMM PF01580
YP_005155548.1	identified by similarity to GP:3136068; match to protein family HMM PF00909; match to protein family HMM TIGR00836
YP_005155550.1	identified by similarity to SP:P23911; match to protein family HMM PF02551; match to protein family HMM TIGR00189
YP_005155551.1	identified by match to protein family HMM PF01360
YP_005155552.1	identified by match to protein family HMM PF00903
YP_005155553.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_005155554.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_005155555.1	identified by similarity to EGAD:23053; match to protein family HMM PF01127
YP_005155556.1	identified by similarity to EGAD:15755; match to protein family HMM PF01127
YP_005155557.1	identified by match to protein family HMM PF00583
YP_005155558.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_005155559.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_005155560.1	identified by match to protein family HMM PF02133
YP_005155561.1	identified by similarity to GP:7739616
YP_005155562.1	identified by similarity to GP:15156392; match to protein family HMM PF03992
YP_005155563.1	identified by similarity to GP:15156391
YP_005155564.1	identified by match to protein family HMM PF01022
YP_005155565.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_005155566.1	Essential for efficient processing of 16S rRNA
YP_005155567.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_005155568.1	identified by similarity to GP:15157831
YP_005155569.1	Catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_005155570.1	identified by similarity to GP:14024383
YP_005155571.1	identified by match to protein family HMM PF01810
YP_005155572.1	identified by similarity to GP:15157838; match to protein family HMM PF01124
YP_005155573.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_005155574.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_005155576.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_005155577.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_005155578.1	Catalyzes the reversible oxidation of malate to oxaloacetate
YP_005155580.1	identified by similarity to GP:15076082; match to protein family HMM PF03969
YP_005155581.1	identified by similarity to GP:954748
YP_005155583.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_005155584.1	identified by similarity to GP:15076264; match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579
YP_005155585.1	identified by similarity to EGAD:5681; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_005155586.1	Involved in cell division; probably involved in intracellular septation
YP_005155587.1	identified by similarity to EGAD:35929; match to protein family HMM PF00753
YP_005155589.1	identified by similarity to OMNI:NTL02ML2661
YP_005155590.1	identified by similarity to EGAD:16514; match to protein family HMM PF00293
YP_005155591.1	identified by match to protein family HMM PF00583
YP_005155592.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_005155594.1	identified by similarity to EGAD:7364; match to protein family HMM PF00639
YP_005155596.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_005155598.1	identified by similarity to GP:14023746
YP_005155599.1	identified by match to protein family HMM PF00884; match to protein family HMM PF02418
YP_005155602.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_005155604.1	identified by match to protein family HMM PF00497
YP_005155605.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_005155606.1	identified by match to protein family HMM PF00005
YP_005155607.1	identified by match to protein family HMM PF00491
YP_005155608.1	catalyzes the formation of fumarate from aspartate
YP_005155609.1	identified by similarity to EGAD:31037; match to protein family HMM PF00005
YP_005155610.1	identified by similarity to EGAD:14317; match to protein family HMM PF00710
YP_005155611.1	identified by match to protein family HMM PF00392
YP_005155612.1	identified by similarity to SP:P43843; match to protein family HMM PF00710
YP_005155613.1	identified by match to protein family HMM PF00083
YP_005155615.1	catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine
YP_005155616.1	identified by match to protein family HMM PF00582
YP_005155618.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_005155619.1	identified by similarity to SP:P38974; match to protein family HMM PF00766
YP_005155620.1	identified by similarity to EGAD:17375; match to protein family HMM PF01012
YP_005155621.1	identified by match to protein family HMM TIGR00364
YP_005155622.1	identified by match to protein family HMM PF01242
YP_005155623.1	identified by match to protein family HMM PF04055
YP_005155624.1	identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636
YP_005155625.1	identified by similarity to OMNI:NTL02ML2682
YP_005155626.1	identified by match to protein family HMM PF00106
YP_005155627.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_005155628.1	identified by match to protein family HMM PF02639
YP_005155630.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_005155632.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048
YP_005155633.1	identified by similarity to GP:15075674
YP_005155634.1	Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively
YP_005155635.1	identified by similarity to GP:15075687
YP_005155636.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_005155637.1	dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate
YP_005155638.1	identified by similarity to OMNI:NTL02ML2723
YP_005155640.1	identified by similarity to SP:P39163; match to protein family HMM PF04752
YP_005155641.1	identified by similarity to EGAD:140445; match to protein family HMM PF02325
YP_005155642.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_005155643.1	identified by match to protein family HMM PF01553
YP_005155644.1	identified by similarity to GP:15075681
YP_005155645.1	identified by similarity to OMNI:NTL02ML2714
YP_005155646.1	identified by similarity to EGAD:7038; match to protein family HMM PF00005
YP_005155650.1	porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure
YP_005155652.1	identified by similarity to GP:15157980
YP_005155653.1	identified by similarity to OMNI:NTL02ML3264; match to protein family HMM PF03372; match to protein family HMM TIGR00633
YP_005155654.1	identified by match to protein family HMM PF00027
YP_005155655.1	identified by similarity to OMNI:NTL02ML3262; match to protein family HMM PF00072; match to protein family HMM PF00486
YP_005155656.1	identified by similarity to GP:14024337
YP_005155662.1	identified by similarity to GI:260567512; contains PRK14849 domain
YP_005155663.1	identified by similarity to GP:15075693; match to protein family HMM PF02592; match to protein family HMM TIGR00697
YP_005155664.1	required for 70S ribosome assembly
YP_005155665.1	identified by similarity to OMNI:NTL02ML2738
YP_005155666.1	identified by match to protein family HMM PF00376
YP_005155667.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_005155668.1	identified by similarity to GP:15141324
YP_005155670.1	identified by similarity to SP:P29934; match to protein family HMM TIGR01651
YP_005155671.1	identified by similarity to SP:P29933; match to protein family HMM TIGR01650
YP_005155673.1	identified by match to protein family HMM PF00226
YP_005155675.1	identified by similarity to SP:P15298; match to protein family HMM PF01722
YP_005155676.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_005155677.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_005155678.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_005155680.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_005155681.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_005155682.1	identified by similarity to GP:15159690
YP_005155683.1	identified by similarity to GP:15075708; match to protein family HMM PF01206
YP_005155684.1	identified by match to protein family HMM PF02492
YP_005155685.1	identified by match to protein family HMM PF00768
YP_005155686.1	identified by match to protein family HMM PF01546; match to protein family HMM TIGR01891
YP_005155688.1	identified by similarity to EGAD:23256; match to protein family HMM PF00106
YP_005155689.1	identified by similarity to GP:15157579; match to protein family HMM PF04828
YP_005155690.1	identified by similarity to OMNI:NTL03PA01934
YP_005155691.1	identified by similarity to EGAD:149670; match to protein family HMM PF00732; match to protein family HMM PF05199
YP_005155692.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_005155694.1	identified by similarity to EGAD:149672; match to protein family HMM PF00171
YP_005155695.1	identified by match to protein family HMM PF00378
YP_005155696.1	identified by match to protein family HMM PF01144
YP_005155697.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_005155698.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_005155699.1	identified by similarity to GP:15076333
YP_005155700.1	identified by match to protein family HMM PF00296
YP_005155702.1	identified by similarity to GP:15076239; match to protein family HMM PF04392
YP_005155704.1	identified by match to protein family HMM PF02653
YP_005155705.1	identified by match to protein family HMM PF00005
YP_005155706.1	required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA
YP_005155707.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_005155708.1	identified by similarity to SP:O05189; match to protein family HMM PF00991
YP_005155709.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_005155710.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_005155711.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_005155712.1	identified by similarity to GP:14024528; match to protein family HMM PF03190
YP_005155713.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_005155714.1	identified by similarity to OMNI:NTL02ML3455; match to protein family HMM PF03653; match to protein family HMM TIGR00701
YP_005155715.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_005155716.1	identified by similarity to GP:14024532; match to protein family HMM PF03618
YP_005155717.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_005155718.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_005155719.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_005155720.1	3'-5' exonuclease of DNA polymerase III
YP_005155721.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_005155722.1	F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein
YP_005155723.1	identified by similarity to GP:15154866
YP_005155724.1	identified by match to protein family HMM PF03562
YP_005155725.1	identified by match to protein family HMM PF01713
YP_005155726.1	identified by similarity to GP:15154869; match to protein family HMM PF01381
YP_005155727.1	identified by similarity to GP:15154911
YP_005155728.1	heat shock protein involved in degradation of misfolded proteins
YP_005155729.1	heat shock protein involved in degradation of misfolded proteins
YP_005155730.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_005155731.1	identified by similarity to GP:15072982
YP_005155732.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_005155733.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_005155734.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_005155735.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_005155736.1	catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis
YP_005155737.1	identified by match to protein family HMM PF00472
YP_005155738.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_005155739.1	identified by similarity to GP:2947107; match to protein family HMM PF00072; match to protein family HMM PF00486
YP_005155740.1	identified by similarity to GP:2947211; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_005155741.1	identified by similarity to GP:14024999
YP_005155743.1	identified by similarity to EGAD:7066; match to protein family HMM PF03610
YP_005155744.1	identified by similarity to SP:P08877; match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_005155746.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_005155748.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_005155749.1	identified by similarity to OMNI:NTL02ML3919; match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_005155750.1	identified by similarity to GP:14024993; match to protein family HMM PF00483
YP_005155751.1	identified by similarity to OMNI:NTL02ML3917
YP_005155752.1	identified by similarity to OMNI:CC3538; match to protein family HMM PF00580
YP_005155754.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_005155755.1	identified by match to protein family HMM TIGR01499
YP_005155756.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_005155757.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_005155759.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_005155760.1	catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis
YP_005155761.1	identified by similarity to OMNI:VC1698
YP_005155762.1	identified by similarity to GP:15154876; match to protein family HMM PF01863
YP_005155763.1	identified by similarity to GP:15072953
YP_005155764.1	identified by match to protein family HMM PF03594; match to protein family HMM TIGR00843
YP_005155765.1	identified by similarity to OMNI:NTL02ML3900
YP_005155766.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_005155767.1	identified by similarity to EGAD:42737
YP_005155768.1	identified by similarity to SP:P55874; match to protein family HMM PF01632; match to protein family HMM TIGR00001
YP_005155769.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_005155770.1	identified by similarity to GP:15155150
YP_005155771.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_005155772.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_005155773.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_005155774.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_005155775.1	identified by similarity to EGAD:7249; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556
YP_005155776.1	identified by similarity to GP:9966391
YP_005155777.1	OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_005155778.1	identified by similarity to GP:15155195
YP_005155779.1	identified by similarity to OMNI:NTL02ML3653; match to protein family HMM PF03758
YP_005155780.1	The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_005155781.1	identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368
YP_005155782.1	identified by similarity to GP:15074346
YP_005155784.1	identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413
YP_005155786.1	identified by similarity to EGAD:35582
YP_005155788.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138
YP_005155789.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974
YP_005155790.1	identified by similarity to GP:6531665; match to protein family HMM PF00005; match to protein family HMM TIGR00972
YP_005155791.1	identified by similarity to EGAD:14202; match to protein family HMM PF01895; match to protein family HMM TIGR02135
YP_005155792.1	identified by similarity to EGAD:5895; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154
YP_005155794.1	identified by similarity to OMNI:NTL02ML4270
YP_005155795.1	identified by similarity to GP:15155785
YP_005155797.1	identified by similarity to SP:Q9X4A7; match to protein family HMM PF02073
YP_005155798.1	binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage
YP_005155799.1	identified by match to protein family HMM PF00814
YP_005155800.1	identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575
YP_005155801.1	identified by match to protein family HMM PF01553
YP_005155802.1	identified by similarity to GP:14025368; match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01574
YP_005155804.1	identified by match to protein family HMM PF02562
YP_005155805.1	identified by similarity to OMNI:NTL02ML4294; match to protein family HMM PF02130; match to protein family HMM TIGR00043
YP_005155806.1	identified by similarity to OMNI:VC0959; match to protein family HMM PF00571; match to protein family HMM PF03471
YP_005155807.1	Transfers the fatty acyl group on membrane lipoproteins
YP_005155808.1	identified by match to protein family HMM PF01381
YP_005155809.1	methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_005155810.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_005155811.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_005155812.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_005155813.1	identified by similarity to GP:15073167; match to protein family HMM PF04296
YP_005155814.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_005155815.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_005155816.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_005155817.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_005155818.1	identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726
YP_005155819.1	identified by match to protein family HMM PF05175
YP_005155820.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_005155821.1	FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_005155822.1	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP
YP_005155823.1	identified by match to protein family HMM PF01475
YP_005155824.1	identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363
YP_005155825.1	identified by similarity to GP:14025396
YP_005155826.1	Involved in the metabolism of aromatic amino acids
YP_005155828.1	identified by match to protein family HMM PF00877
YP_005155829.1	identified by similarity to GP:15073078
YP_005155830.1	identified by match to protein family HMM PF00883
YP_005155831.1	identified by similarity to OMNI:CC2948
YP_005155832.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_005155833.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_005155834.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase