-- dump date 20140619_011724 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 563178000001 SEQ_END SEQ_END NC_011833.1 642122 642122 DR NC_011833.1; contig end 642122..642122 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) YP_002467775.1 CDS gidA NC_011833.1 197 2083 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 197..2083 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262729 YP_002467776.1 CDS atpB NC_011833.1 2278 3102 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 2278..3102 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262348 YP_002467777.1 CDS atpE NC_011833.1 3139 3378 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 3139..3378 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262349 YP_002467778.1 CDS atpF NC_011833.1 3497 3982 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 3497..3982 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262350 YP_002467779.1 CDS atpH NC_011833.1 3982 4515 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 3982..4515 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262351 YP_002467780.1 CDS atpA NC_011833.1 4530 6068 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 4530..6068 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262352 YP_002467781.1 CDS atpG NC_011833.1 6101 6973 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 6101..6973 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262353 YP_002467782.1 CDS atpD NC_011833.1 6997 8394 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 6997..8394 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262354 YP_002467783.1 CDS atpC NC_011833.1 8421 8837 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 8421..8837 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262355 YP_002467784.1 CDS gyrB NC_011833.1 8911 11322 R DNA gyrase subunit B complement(8911..11322) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262356 YP_002467785.1 CDS dnaN NC_011833.1 11449 12549 R DNA polymerase III, beta subunit; DNA polymerase III beta chain complement(11449..12549) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262357 YP_002467786.1 CDS dnaA NC_011833.1 12554 13918 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(12554..13918) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262358 YP_002467787.1 CDS rpmH NC_011833.1 14369 14512 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 14369..14512 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262359 YP_002467788.1 CDS yidC NC_011833.1 15010 16608 D protein translocase subunit yidC; 60 kDa inner-membrane protein 15010..16608 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262361 YP_002467789.1 CDS trmE NC_011833.1 16647 18008 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 16647..18008 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262362 YP_002467790.1 CDS groES NC_011833.1 18375 18665 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 18375..18665 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262364 YP_002467791.1 CDS groEL NC_011833.1 18714 20360 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 18714..20360 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262365 YP_002467792.1 CDS efp NC_011833.1 20985 21596 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 20985..21596 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262366 YP_002467793.1 CDS dnaC NC_011833.1 21614 22354 R acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC complement(21614..22354) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262367 YP_002467794.1 CDS dnaT NC_011833.1 22354 22848 R This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; primosomal protein DnaI complement(22354..22848) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262368 YP_002467795.1 CDS rsmD NC_011833.1 22945 23520 R 16S rRNA m2G966 methyltransferase (YhhF) complement(22945..23520) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262369 YP_002467796.1 CDS ftsY NC_011833.1 23651 24787 D signal recognition particle-docking protein FtsY; cell division protein FtsY 23651..24787 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262370 YP_002467797.1 CDS rpoH NC_011833.1 24950 25804 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 24950..25804 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262371 YP_002467798.1 CDS glmS NC_011833.1 25945 27774 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(25945..27774) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262372 YP_002467799.1 CDS glmU NC_011833.1 27844 29223 R UDP-N-acetylglucosamine pyrophosphorylase complement(27844..29223) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262373 YP_002467800.1 CDS yigL NC_011833.1 29403 30221 D sugar phosphatase 29403..30221 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262374 YP_002467801.1 CDS metE NC_011833.1 31192 33468 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 31192..33468 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262375 YP_002467802.1 CDS purH NC_011833.1 33591 35168 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(33591..35168) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262376 YP_002467803.1 CDS hupA NC_011833.1 35309 35587 R bacterial nucleoid protein Hbs; DNA-binding protein hu-alpha complement(35309..35587) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262377 YP_002467804.1 CDS rpoC NC_011833.1 36321 40544 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(36321..40544) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262378 YP_002467805.1 CDS rpoB NC_011833.1 40622 44650 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(40622..44650) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262379 YP_002467806.1 CDS rplL NC_011833.1 44870 45238 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(44870..45238) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262380 YP_002467807.1 CDS rplJ NC_011833.1 45305 45802 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(45305..45802) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262381 YP_002467808.1 CDS rplA NC_011833.1 46068 46763 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(46068..46763) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262382 YP_002467809.1 CDS rplK NC_011833.1 46766 47194 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(46766..47194) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262383 YP_002467810.1 CDS nusG NC_011833.1 47242 47787 R transcription antitermination protein nusG; transcription antitermination protein NusG complement(47242..47787) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262384 YP_002467811.1 CDS secE NC_011833.1 47790 48173 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(47790..48173) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262385 YP_002467812.1 CDS murB NC_011833.1 48978 50048 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(48978..50048) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262733 YP_002467813.1 CDS metF NC_011833.1 50164 51042 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 50164..51042 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262734 YP_002467814.1 CDS argE NC_011833.1 51054 52199 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(51054..52199) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262735 YP_002467815.1 CDS argC NC_011833.1 52360 53364 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 52360..53364 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262736 YP_002467816.1 CDS argB NC_011833.1 53385 54158 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 53385..54158 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262737 YP_002467817.1 CDS argG NC_011833.1 54188 55399 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 54188..55399 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262738 YP_002467818.1 CDS argH NC_011833.1 55471 56850 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 55471..56850 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262739 YP_002467819.1 CDS yibN NC_011833.1 56932 57366 D rhodanese-related sulfurtransferase (YibN) 56932..57366 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262740 YP_002467820.1 CDS secB NC_011833.1 57474 57902 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 57474..57902 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262741 YP_002467821.1 CDS cysE NC_011833.1 58004 58828 D serine O-acetyltransferase; serine acetyltransferase 58004..58828 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262742 YP_002467822.1 CDS rpoD NC_011833.1 58935 60773 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(58935..60773) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262743 YP_002467823.1 CDS dnaG NC_011833.1 60941 62674 R DNA primase complement(60941..62674) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262744 YP_002467824.1 CDS rpsU NC_011833.1 62755 62970 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(62755..62970) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262745 YP_002467825.1 CDS ygjD NC_011833.1 63204 64214 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 63204..64214 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262746 YP_002467826.1 CDS ribB NC_011833.1 64192 64839 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(64192..64839) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262747 YP_002467827.1 CDS yb3052 NC_011833.1 65112 66059 R D-alpha,beta-D-heptose 7-phosphate 1-kinase; kinase complement(65112..66059) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262748 YP_002467828.1 CDS cca NC_011833.1 66273 67517 D catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 66273..67517 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262749 YP_002467829.1 CDS bacA NC_011833.1 67543 68340 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(67543..68340) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262750 YP_002467830.1 CDS crr NC_011833.1 68426 68911 R functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter complement(68426..68911) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262751 YP_002467831.1 CDS ptsI NC_011833.1 68961 70676 R Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase complement(68961..70676) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262752 YP_002467832.1 CDS ptsH NC_011833.1 70825 71082 R phosphocarrier protein HPr complement(70825..71082) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262753 YP_002467833.1 CDS cysK NC_011833.1 71232 72179 R cysteine synthase; cysteine synthase A complement(71232..72179) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262754 YP_002467834.1 CDS lig NC_011833.1 72434 74461 D DNA ligase 72434..74461 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262755 YP_002467835.1 CDS gltX NC_011833.1 74773 76176 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 74773..76176 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262758 YP_002467836.1 CDS fliE NC_011833.1 76516 76812 R flagellar hook-basal body complex protein FliE complement(76516..76812) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262760 YP_002467837.1 CDS fliF NC_011833.1 77076 78713 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 77076..78713 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262761 YP_002467838.1 CDS fliG NC_011833.1 78710 79705 D flagellar motor switch protein FliG 78710..79705 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262762 YP_002467839.1 CDS fliH NC_011833.1 79698 80360 D flagellar assembly protein FliH 79698..80360 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262763 YP_002467840.1 CDS fliI NC_011833.1 80318 81721 D flagellum-specific ATP synthase 80318..81721 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262764 YP_002467841.1 CDS fliJ NC_011833.1 81745 82188 D flagellar FliJ protein 81745..82188 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262765 YP_002467842.1 CDS fliK NC_011833.1 82197 83333 D flagellar hook-length control protein 82197..83333 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262766 YP_002467843.1 CDS fliM NC_011833.1 83394 84341 D flagellar motor switch protein FliM 83394..84341 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262767 YP_002467844.1 CDS fliN NC_011833.1 84334 84735 D flagellar motor switch protein FliN 84334..84735 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262768 YP_002467845.1 CDS fliP NC_011833.1 84747 85886 D putative bifunctional flagellar biosynthesis protein FliO/FliP 84747..85886 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262769 YP_002467846.1 CDS fliQ NC_011833.1 85958 86227 D flagellar biosynthetic protein FliQ 85958..86227 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262770 YP_002467847.1 CDS fliR NC_011833.1 86227 87003 D flagellar biosynthetic protein FliR 86227..87003 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262771 YP_002467848.1 CDS rpmG NC_011833.1 87156 87323 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(87156..87323) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262772 YP_002467849.1 CDS rpmB NC_011833.1 87334 87561 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(87334..87561) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262773 YP_002467850.1 CDS ytfN NC_011833.1 87907 90819 D hypothetical protein 87907..90819 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262774 YP_002467851.1 CDS ppa NC_011833.1 90835 91383 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(90835..91383) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262775 YP_002467852.1 CDS pmbA NC_011833.1 91577 92917 D microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62; PmbA protein 91577..92917 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262776 YP_002467853.1 CDS fabB NC_011833.1 94382 95602 D 3-oxoacyl-[acyl-carrier-protein] synthase I; 3-oxoacyl-ACP synthase 94382..95602 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262778 YP_002467854.1 CDS talA NC_011833.1 95842 96792 D transaldolase; transaldolase B 95842..96792 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262779 YP_002467855.1 CDS tktB NC_011833.1 96847 98844 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 96847..98844 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262780 YP_002467856.1 CDS dapE NC_011833.1 98949 100076 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 98949..100076 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262781 YP_002467857.1 CDS dapA NC_011833.1 100466 101350 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(100466..101350) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262782 YP_002467858.1 CDS aroC NC_011833.1 101926 102990 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(101926..102990) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262783 YP_002467859.1 CDS yb2331 NC_011833.1 103285 103845 D hypothetical protein 103285..103845 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262784 YP_002467860.1 CDS hisG NC_011833.1 104170 105069 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 104170..105069 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262785 YP_002467861.1 CDS hisD NC_011833.1 105078 106385 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 105078..106385 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262786 YP_002467862.1 CDS hisC NC_011833.1 106382 107488 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 106382..107488 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262787 YP_002467863.1 CDS hisB NC_011833.1 107478 108539 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 107478..108539 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262788 YP_002467864.1 CDS hisH NC_011833.1 108539 109129 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 108539..109129 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262789 YP_002467865.1 CDS hisA NC_011833.1 109134 109874 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 109134..109874 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262790 YP_002467866.1 CDS hisF NC_011833.1 109853 110629 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 109853..110629 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262791 YP_002467867.1 CDS hisI NC_011833.1 110623 111270 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 110623..111270 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262792 YP_002467868.1 CDS gnd NC_011833.1 111629 113035 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 111629..113035 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262793 YP_002467869.1 CDS dcd NC_011833.1 113198 113818 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 113198..113818 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262794 YP_002467870.1 CDS metG NC_011833.1 113966 115609 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 113966..115609 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262795 YP_002467871.1 CDS mesJ NC_011833.1 115657 116979 R cell cycle protein MesJ complement(115657..116979) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262796 YP_002467872.1 CDS ribE NC_011833.1 117205 117831 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 117205..117831 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262798 YP_002467873.1 CDS rnfA NC_011833.1 117868 118449 D Na(+)-translocating NADH-quinone reductase subunit E 117868..118449 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262799 YP_002467874.1 CDS rnfB NC_011833.1 118452 118955 D ferredoxin II 118452..118955 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262800 YP_002467875.1 CDS rnfC NC_011833.1 119118 120539 D membrane protein 119118..120539 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262801 YP_002467876.1 CDS ydgO NC_011833.1 120587 121630 D hypothetical protein 120587..121630 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262802 YP_002467877.1 CDS rnfG NC_011833.1 121779 122273 D nitrogen fixation protein 121779..122273 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262803 YP_002467878.1 CDS ydgQ NC_011833.1 122248 122931 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 122248..122931 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262804 YP_002467879.1 CDS nth NC_011833.1 122942 123574 D endonuclease III 122942..123574 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262805 YP_002467880.1 CDS priA NC_011833.1 123597 125777 D replication restart DNA helicase PriA; primosomal protein N' 123597..125777 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262806 YP_002467881.1 CDS tyrS NC_011833.1 125937 127205 D tyrosyl-tRNA synthetase 125937..127205 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262807 YP_002467882.1 CDS ydiC NC_011833.1 127213 127605 R integral membrane protein of SoxR-reducing complex complement(127213..127605) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262808 YP_002467883.1 CDS yb1688 NC_011833.1 127829 128911 D YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; putative inner membrane protein 127829..128911 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262809 YP_002467884.1 CDS aroH NC_011833.1 129263 130309 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 129263..130309 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262810 YP_002467885.1 CDS thrS NC_011833.1 130477 132405 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 130477..132405 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262812 YP_002467886.1 CDS infC NC_011833.1 132409 132948 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 132409..132948 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262634 YP_002467887.1 CDS rpmI NC_011833.1 133035 133232 D LSU ribosomal protein L35P; 50S ribosomal protein L35 133035..133232 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262635 YP_002467888.1 CDS rplT NC_011833.1 133275 133631 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 133275..133631 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262636 YP_002467889.1 CDS pheS NC_011833.1 133826 134815 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 133826..134815 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262637 YP_002467890.1 CDS pheT NC_011833.1 134825 137212 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 134825..137212 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262638 YP_002467891.1 CDS ihfA NC_011833.1 137217 137525 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 137217..137525 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262639 YP_002467892.1 CDS queA NC_011833.1 137567 138640 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 137567..138640 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262640 YP_002467893.1 CDS tgt NC_011833.1 138681 139793 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 138681..139793 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262641 YP_002467894.1 CDS yajC NC_011833.1 139818 140153 D protein translocase subunit YajC; subunit of SecD-SecF-Yajc-YidC secretion complex 139818..140153 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262642 YP_002467895.1 CDS glyS NC_011833.1 140205 142277 R glycyl-tRNA synthetase subunit beta complement(140205..142277) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262643 YP_002467896.1 CDS glyQ NC_011833.1 142252 143190 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(142252..143190) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262644 YP_002467897.1 CDS nfo NC_011833.1 143886 144731 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 143886..144731 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262645 YP_002467898.1 CDS rplY NC_011833.1 144766 145053 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 144766..145053 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262646 YP_002467899.1 CDS yabI NC_011833.1 145123 145893 R hypothetical protein complement(145123..145893) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262647 YP_002467900.1 CDS surA NC_011833.1 146080 147372 D survival protein SurA 146080..147372 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262648 YP_002467901.1 CDS ksgA NC_011833.1 147426 148247 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 147426..148247 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262649 YP_002467902.1 CDS apaH NC_011833.1 148292 149116 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 148292..149116 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262650 YP_002467903.1 CDS folA NC_011833.1 149143 149628 R dihydrofolate reductase complement(149143..149628) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262651 YP_002467904.1 CDS carB NC_011833.1 149718 152957 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(149718..152957) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262652 YP_002467905.1 CDS carA NC_011833.1 152971 154134 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(152971..154134) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262653 YP_002467906.1 CDS dapB NC_011833.1 154344 155153 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(154344..155153) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262654 YP_002467907.1 CDS ispH NC_011833.1 155157 156116 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(155157..156116) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262655 YP_002467908.1 CDS lspA NC_011833.1 156181 156663 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(156181..156663) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262656 YP_002467909.1 CDS ileS NC_011833.1 156663 159485 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(156663..159485) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262657 YP_002467910.1 CDS ribF NC_011833.1 159502 160443 R FMN adenylyltransferase complement(159502..160443) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262658 YP_002467911.1 CDS rpsT NC_011833.1 160658 160927 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 160658..160927 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262659 YP_002467912.1 CDS dnaJ NC_011833.1 160977 162110 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(160977..162110) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262660 YP_002467913.1 CDS dnaK NC_011833.1 162223 164136 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(162223..164136) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262661 YP_002467914.1 CDS nuoA NC_011833.1 164472 164876 D NADH dehydrogenase I subunit A 164472..164876 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262662 YP_002467915.1 CDS nuoB NC_011833.1 164910 165584 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 164910..165584 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262663 YP_002467916.1 CDS nuoCD NC_011833.1 165675 167477 D NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 165675..167477 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262664 YP_002467917.1 CDS nuoE NC_011833.1 167500 167988 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 167500..167988 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262665 YP_002467918.1 CDS nuoF NC_011833.1 167985 169319 D NADH dehydrogenase I subunit F 167985..169319 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262666 YP_002467919.1 CDS nuoG NC_011833.1 169413 172133 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 169413..172133 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262667 YP_002467920.1 CDS nuoH NC_011833.1 172145 173113 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 172145..173113 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262668 YP_002467921.1 CDS nuoI NC_011833.1 173138 173680 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 173138..173680 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262669 YP_002467922.1 CDS nuoJ NC_011833.1 173690 174202 D NADH dehydrogenase I subunit J 173690..174202 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262670 YP_002467923.1 CDS nuoK NC_011833.1 174233 174535 D NADH dehydrogenase I subunit K 174233..174535 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262671 YP_002467924.1 CDS nuoL NC_011833.1 174532 176376 D NADH dehydrogenase I subunit L 174532..176376 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262672 YP_002467925.1 CDS nuoM NC_011833.1 176473 177990 D NADH dehydrogenase I subunit M 176473..177990 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262673 YP_002467926.1 CDS nuoN NC_011833.1 178048 179457 D NADH dehydrogenase I subunit N 178048..179457 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262674 YP_002467927.1 CDS folC NC_011833.1 180582 181817 D dihydrofolate synthase 180582..181817 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262675 YP_002467928.1 CDS prsA NC_011833.1 182396 183343 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(182396..183343) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262676 YP_002467929.1 CDS ipk NC_011833.1 183463 184347 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(183463..184347) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262677 YP_002467930.1 CDS prfA NC_011833.1 184555 185640 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 184555..185640 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262678 YP_002467931.1 CDS hemK NC_011833.1 185637 186470 D HemK protein 185637..186470 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262679 YP_002467932.1 CDS ychA NC_011833.1 186630 187439 D transcriptional regulator; putative transcriptional regulator 186630..187439 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262680 YP_002467933.1 CDS nadE NC_011833.1 187447 188253 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(187447..188253) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262681 YP_002467934.1 CDS ackA NC_011833.1 188337 189554 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 188337..189554 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262682 YP_002467935.1 CDS pta NC_011833.1 189599 191725 D phosphotransacetylase; phosphate acetyltransferase 189599..191725 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262683 YP_002467936.1 CDS yfaE NC_011833.1 191757 192020 R diferric-tyrosyl radical cofactor maintenance protein complement(191757..192020) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262684 YP_002467937.1 CDS nrdB NC_011833.1 192023 193153 R B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta complement(192023..193153) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262685 YP_002467938.1 CDS nrdA NC_011833.1 193221 195506 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(193221..195506) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262686 YP_002467939.1 CDS gyrA NC_011833.1 195579 198071 R DNA gyrase subunit A complement(195579..198071) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262687 YP_002467940.1 CDS yba2 NC_011833.1 198338 199054 D hypothetical protein 198338..199054 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262688 YP_002467941.1 CDS ahpC NC_011833.1 199176 199769 R alkyl hydroperoxide reductase complement(199176..199769) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262689 YP_002467942.1 CDS grpE NC_011833.1 200583 201149 R heat shock protein GrpE2 complement(200583..201149) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262691 YP_002467943.1 CDS ppnK NC_011833.1 201266 202144 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 201266..202144 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262692 YP_002467944.1 CDS smpA NC_011833.1 202277 202585 D small protein A 202277..202585 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262693 YP_002467945.1 CDS grxD NC_011833.1 203122 203448 D glutaredoxin 203122..203448 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262695 YP_002467946.1 CDS rnt NC_011833.1 203592 204257 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(203592..204257) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262728 YP_002467947.1 CDS sodA NC_011833.1 204477 205088 D superoxide dismutase 204477..205088 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262696 YP_002467948.1 CDS pth NC_011833.1 205276 205809 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 205276..205809 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262697 YP_002467949.1 CDS ychF NC_011833.1 205850 206938 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 205850..206938 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262698 YP_002467950.1 CDS thrC NC_011833.1 207014 208303 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(207014..208303) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262699 YP_002467951.1 CDS thrB NC_011833.1 208310 209239 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(208310..209239) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262700 YP_002467952.1 CDS thrA NC_011833.1 209260 211710 R multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I complement(209260..211710) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262701 YP_002467953.1 CDS hpt NC_011833.1 212369 212905 D hypoxanthine phosphoribosyltransferase 212369..212905 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262702 YP_002467954.1 CDS panC NC_011833.1 212913 213770 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(212913..213770) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262703 YP_002467955.1 CDS panB NC_011833.1 213785 214576 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(213785..214576) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262704 YP_002467956.1 CDS dksA NC_011833.1 214692 215147 R DnaK suppressor protein complement(214692..215147) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262705 YP_002467957.1 CDS truA NC_011833.1 215404 216204 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 215404..216204 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262706 YP_002467958.1 CDS mrcB NC_011833.1 216276 218558 D bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; penicillin-binding protein 1b 216276..218558 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262707 YP_002467959.1 CDS secA NC_011833.1 218788 221415 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 218788..221415 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262708 YP_002467960.1 CDS mutT NC_011833.1 221491 221865 D mutator MutT protein 221491..221865 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262709 YP_002467961.1 CDS yacE NC_011833.1 221848 222501 R Dephospho-CoA kinase; dephospho-CoA kinase complement(221848..222501) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262710 YP_002467962.1 CDS guaC NC_011833.1 222557 223606 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 222557..223606 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262711 YP_002467963.1 CDS aceE NC_011833.1 223834 226497 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 223834..226497 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262712 YP_002467964.1 CDS aceF NC_011833.1 226501 227718 D branched-chain alpha-keto acid dehydrogenase subunit E2 226501..227718 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262387 YP_002467965.1 CDS lpdA NC_011833.1 227762 229183 D dihydrolipoamide dehydrogenase 227762..229183 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262469 YP_002467966.1 CDS speD NC_011833.1 229356 230153 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(229356..230153) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262470 YP_002467967.1 CDS speE NC_011833.1 230172 231032 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(230172..231032) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262471 YP_002467968.1 CDS pfs NC_011833.1 231308 232006 R methylthioadenosine nucleosidase; 5'-methylthioadenosine nucleosidase complement(231308..232006) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262472 YP_002467969.1 CDS yadR NC_011833.1 232070 232414 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(232070..232414) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262473 YP_002467970.1 CDS ftsZ NC_011833.1 232648 233802 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(232648..233802) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262474 YP_002467971.1 CDS ftsA NC_011833.1 233860 235116 R cell division protein FtsA complement(233860..235116) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262475 YP_002467972.1 CDS murC NC_011833.1 236231 237685 R UDP-N-acetylmuramate--L-alanine ligase; UDP-N-acetylmuramate-alanine ligase complement(236231..237685) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262476 YP_002467973.1 CDS murG NC_011833.1 237728 238792 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(237728..238792) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262477 YP_002467974.1 CDS ftsW NC_011833.1 238789 239988 R cell division protein FtsW complement(238789..239988) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262478 YP_002467975.1 CDS murD NC_011833.1 239985 241307 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(239985..241307) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262479 YP_002467976.1 CDS mraY NC_011833.1 241307 242380 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(241307..242380) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262480 YP_002467977.1 CDS murF NC_011833.1 242364 243740 R UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(242364..243740) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262481 YP_002467978.1 CDS murE NC_011833.1 243737 245233 R UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase complement(243737..245233) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262482 YP_002467979.1 CDS ftsI NC_011833.1 245234 246973 R peptidoglycan synthetase FtsI; cell division protein FtsI complement(245234..246973) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262483 YP_002467980.1 CDS ftsL NC_011833.1 247038 247291 R cell division protein complement(join(247038..247118,247118..247291)) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262484 YP_002467981.1 CDS mraW NC_011833.1 247294 248232 R S-adenosyl-methyltransferase MraW complement(247294..248232) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262485 YP_002467982.1 CDS ilvH NC_011833.1 248354 248830 R acetolactate synthase, small subunit; acetolactate synthase small subunit complement(248354..248830) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262486 YP_002467983.1 CDS ilvI NC_011833.1 248835 250550 R acetolactate synthase, large subunit; acetolactate synthase large subunit complement(248835..250550) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262487 YP_002467984.1 CDS htrA NC_011833.1 252168 253604 D protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 252168..253604 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262488 YP_002467985.1 CDS dapD NC_011833.1 253648 254472 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(253648..254472) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262489 YP_002467986.1 CDS map NC_011833.1 254533 255327 R methionine aminopeptidase, type I; methionine aminopeptidase complement(254533..255327) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262490 YP_002467987.1 CDS rpsB NC_011833.1 255590 256324 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 255590..256324 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262491 YP_002467988.1 CDS tsf NC_011833.1 256401 257207 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 256401..257207 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262492 YP_002467989.1 CDS pyrH NC_011833.1 257258 257986 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 257258..257986 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262493 YP_002467990.1 CDS frr NC_011833.1 258066 258623 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 258066..258623 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262494 YP_002467991.1 CDS dxr NC_011833.1 258706 259902 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 258706..259902 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262495 YP_002467992.1 CDS uppS NC_011833.1 259995 260750 D Undecaprenyl pyrophosphate synthetase; undecaprenyl pyrophosphate synthetase 259995..260750 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262496 YP_002467993.1 CDS yaeT NC_011833.1 260984 263386 D component of outer membrane protein assembly complex; YaeT 260984..263386 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262497 YP_002467994.1 CDS fabZ NC_011833.1 263513 263968 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 263513..263968 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262498 YP_002467995.1 CDS dnaE NC_011833.1 264005 267490 D DNA polymerase III, alpha subunit; DNA polymerase III subunit alpha 264005..267490 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262499 YP_002467996.1 CDS proS NC_011833.1 267618 269336 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(267618..269336) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262500 YP_002467997.1 CDS flhB NC_011833.1 269677 270828 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 269677..270828 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262501 YP_002467998.1 CDS flhA NC_011833.1 270821 272911 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 270821..272911 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262502 YP_002467999.1 CDS argS NC_011833.1 273035 274759 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(273035..274759) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262503 YP_002468000.1 CDS gloB NC_011833.1 276943 277698 R hydroxyacylglutathione hydrolase complement(276943..277698) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262507 YP_002468001.1 CDS dnaQ NC_011833.1 278261 278974 D DNA polymerase III, epsilon subunit; DNA polymerase III subunit epsilon 278261..278974 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262508 YP_002468002.1 CDS gmhA NC_011833.1 279200 279781 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 279200..279781 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262510 YP_002468003.1 CDS gpt NC_011833.1 279888 280364 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 279888..280364 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262511 YP_002468004.1 CDS grpE1 NC_011833.1 280466 281050 D heat shock protein GrpE1 280466..281050 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262512 YP_002468005.1 CDS yfjF NC_011833.1 281129 281428 R hypothetical protein complement(281129..281428) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262513 YP_002468006.1 CDS smpB NC_011833.1 281522 282010 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 281522..282010 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262514 YP_002468007.1 CDS yfhC NC_011833.1 282019 282504 D tRNA-adenosine deaminase; hypothetical protein YfhC 282019..282504 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262515 YP_002468008.1 CDS acpS NC_011833.1 282505 282885 R holo-[acyl-carrier protein] synthase complement(282505..282885) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262516 YP_002468009.1 CDS era NC_011833.1 283011 283862 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(283011..283862) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262517 YP_002468010.1 CDS rnc NC_011833.1 283859 284539 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(283859..284539) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262518 YP_002468011.1 CDS lepB NC_011833.1 284670 285614 R signal peptidase I . Serine peptidase. MEROPS family S26A; signal peptidase I complement(284670..285614) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262519 YP_002468012.1 CDS lepA NC_011833.1 285630 287462 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(285630..287462) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262520 YP_002468013.1 CDS mnmA NC_011833.1 287658 288764 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 287658..288764 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262521 YP_002468014.1 CDS ycfC NC_011833.1 288800 289435 D HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 288800..289435 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262522 YP_002468015.1 CDS purB NC_011833.1 289474 290844 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 289474..290844 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262523 YP_002468016.1 CDS mltE NC_011833.1 290868 291533 D membrane-bound lytic murein transglycosylase E 290868..291533 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262524 YP_002468017.1 CDS fabI NC_011833.1 291647 292429 D Enoyl-[acyl-carrier-protein] reductase [NADH]; enoyl-[acyl-carrier-protein] reductase (NADH) 291647..292429 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262525 YP_002468018.1 CDS rnb NC_011833.1 292616 294565 D Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 292616..294565 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262526 YP_002468019.1 CDS ychE NC_011833.1 294673 295320 D hypothetical protein 294673..295320 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262527 YP_002468020.1 CDS lipB NC_011833.1 295358 295993 D lipoate-protein ligase B 295358..295993 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262528 YP_002468021.1 CDS lipA NC_011833.1 296113 297084 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 296113..297084 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262529 YP_002468022.1 CDS pyrF NC_011833.1 297189 297899 D orotidine-5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 297189..297899 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262530 YP_002468023.1 CDS ribA NC_011833.1 297947 298531 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 297947..298531 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262531 YP_002468024.1 CDS hns NC_011833.1 298635 299042 R nucleoid protein H-NS; DNA-binding protein H-ns complement(298635..299042) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262532 YP_002468025.1 CDS cls NC_011833.1 299388 300848 R catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase complement(299388..300848) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262533 YP_002468026.1 CDS yciA NC_011833.1 301229 301636 R acyl-CoA thioesterase (YciA) complement(301229..301636) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262534 YP_002468027.1 CDS yciB NC_011833.1 301673 302206 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(301673..302206) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262535 YP_002468028.1 CDS yciC NC_011833.1 302234 302977 R hypothetical protein complement(302234..302977) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262536 YP_002468029.1 CDS trpA NC_011833.1 303082 303891 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(303082..303891) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262537 YP_002468030.1 CDS trpC NC_011833.1 305115 306476 R monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase complement(305115..306476) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262539 YP_002468031.1 CDS trpD NC_011833.1 306457 307485 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(306457..307485) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262540 YP_002468032.1 CDS yedA NC_011833.1 307720 308643 D hypothetical protein 307720..308643 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262541 YP_002468033.1 CDS yciL NC_011833.1 308672 309424 D ribosomal large subunit pseudouridine synthase B; 23S rRNA pseudouridine synthase (YciL) 308672..309424 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262542 YP_002468034.1 CDS sohB NC_011833.1 309499 310509 D SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 309499..310509 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262543 YP_002468035.1 CDS topA NC_011833.1 310595 313180 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 310595..313180 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262544 YP_002468036.1 CDS suhB NC_011833.1 313232 314032 R extragenic suppressor protein SuhB complement(313232..314032) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262545 YP_002468037.1 CDS yfgB NC_011833.1 314279 315370 D 23S rRNA m2A2503 methyltransferase (YfgB) 314279..315370 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262546 YP_002468038.1 CDS ispG NC_011833.1 315421 316527 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 315421..316527 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262547 YP_002468039.1 CDS hisS NC_011833.1 316553 317824 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 316553..317824 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262548 YP_002468040.1 CDS glyA NC_011833.1 317884 319137 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 317884..319137 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262549 YP_002468041.1 CDS bioD NC_011833.1 319225 319899 R dethiobiotin synthase; dethiobiotin synthetase complement(319225..319899) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262550 YP_002468042.1 CDS bioB NC_011833.1 320263 321294 R biotin synthase; biotin synthetase complement(320263..321294) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262295 YP_002468043.1 CDS bioA NC_011833.1 321373 322659 D adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 321373..322659 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262553 YP_002468044.1 CDS ybhE NC_011833.1 322668 323672 R catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase complement(322668..323672) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262554 YP_002468045.1 CDS mfd NC_011833.1 323796 326234 R transcription-repair coupling factor complement(323796..326234) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262555 YP_002468046.1 CDS lolC NC_011833.1 326707 327906 D LolCDE ABC lipoprotein transporter (YcfU) 326707..327906 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262556 YP_002468047.1 CDS lolD NC_011833.1 327899 328585 D LolCDE ABC lipoprotein transporter (YcfV) 327899..328585 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262557 YP_002468048.1 CDS gapA NC_011833.1 329910 330920 D glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate dehydrogenase A 329910..330920 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262558 YP_002468049.1 CDS fldA NC_011833.1 331530 332045 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(331530..332045) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262559 YP_002468050.1 CDS phrB NC_011833.1 332252 333703 D Deoxyribodipyrimidine photo-lyase type I; deoxyribodipyrimidine photolyase 332252..333703 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262560 YP_002468051.1 CDS ybgI NC_011833.1 333700 334443 D hypothetical protein 333700..334443 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262561 YP_002468052.1 CDS sucA NC_011833.1 334568 337297 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 334568..337297 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262562 YP_002468053.1 CDS sucB NC_011833.1 337313 338575 D 2-oxoglutarate dehydrogenase E2 component 337313..338575 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262563 YP_002468054.1 CDS gpmA NC_011833.1 338673 339368 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 338673..339368 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262564 YP_002468055.1 CDS pfkA NC_011833.1 339552 340514 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 339552..340514 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262565 YP_002468056.1 CDS glpF NC_011833.1 340580 341371 D glycerol uptake facilitator protein 340580..341371 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262566 YP_002468057.1 CDS tpiA NC_011833.1 341380 342147 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(341380..342147) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262567 YP_002468058.1 CDS ihfB NC_011833.1 342246 342530 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(342246..342530) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262568 YP_002468059.1 CDS rpsA NC_011833.1 342626 344302 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(342626..344302) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262569 YP_002468060.1 CDS aroA NC_011833.1 345141 346424 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(345141..346424) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262570 YP_002468061.1 CDS serC NC_011833.1 346492 347577 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(346492..347577) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262571 YP_002468062.1 CDS serS NC_011833.1 347616 348899 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(347616..348899) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262572 YP_002468063.1 CDS trxB NC_011833.1 349248 350207 D thioredoxin reductase 349248..350207 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262573 YP_002468064.1 CDS infA NC_011833.1 350314 350532 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 350314..350532 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262574 YP_002468065.1 CDS aspS NC_011833.1 350702 352462 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 350702..352462 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262575 YP_002468066.1 CDS znuB NC_011833.1 352473 353261 R high-affinity zinc uptake system membrane protein ZnuB complement(352473..353261) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262576 YP_002468067.1 CDS znuC NC_011833.1 353319 354035 R high-affinity zinc uptake system ATP-binding protein ZnuC complement(353319..354035) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262577 YP_002468068.1 CDS pykA NC_011833.1 355353 356795 R pyruvate kinase complement(355353..356795) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262578 YP_002468069.1 CDS zwf NC_011833.1 357079 358554 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 357079..358554 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262579 YP_002468070.1 CDS htpX NC_011833.1 358739 359617 D putative metalloprotease; heat shock protein HtpX 358739..359617 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262580 YP_002468071.1 CDS cspC NC_011833.1 359966 360175 D cold-shock DNA-binding protein family; cold shock-like protein CspC 359966..360175 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262581 YP_002468072.1 CDS yoaE NC_011833.1 360478 362043 D inner membrane protein (YoaE) 360478..362043 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262582 YP_002468073.1 CDS yeaZ NC_011833.1 362073 362738 D hypothetical protein 362073..362738 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262583 YP_002468074.1 CDS minE NC_011833.1 362884 363135 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(362884..363135) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262584 YP_002468075.1 CDS minD NC_011833.1 363139 363951 R septum site-determining protein MinD complement(363139..363951) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262585 YP_002468076.1 CDS minC NC_011833.1 363978 364691 R septum site-determining protein MinC; cell division inhibitor MinC complement(363978..364691) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262586 YP_002468077.1 CDS yjjT NC_011833.1 365092 365934 D 16S rRNA m(2)G 1207 methyltransferase 365092..365934 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262587 YP_002468078.1 CDS ompA NC_011833.1 366486 367535 R outer membrane protein A complement(366486..367535) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262591 YP_002468079.1 CDS mviN NC_011833.1 367691 369226 R virulence factor MviN-like protein complement(367691..369226) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262592 YP_002468080.1 CDS pyrC NC_011833.1 369500 370552 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 369500..370552 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262593 YP_002468081.1 CDS flgN NC_011833.1 370572 370979 R flagella synthesis protein FlgN complement(370572..370979) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262594 YP_002468082.1 CDS flgA NC_011833.1 371052 371732 R flagella basal-body P-ring formation protein FlgA complement(371052..371732) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262595 YP_002468083.1 CDS flgC NC_011833.1 372425 372835 D flagellar basal-body rod protein FlgC 372425..372835 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262597 YP_002468084.1 CDS flgD NC_011833.1 372847 373557 D basal-body rod modification protein FlgD 372847..373557 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262598 YP_002468085.1 CDS flgE NC_011833.1 373598 374824 D flagellar hook protein FlgE 373598..374824 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262599 YP_002468086.1 CDS flgF NC_011833.1 374851 375609 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 374851..375609 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262600 YP_002468087.1 CDS flgG NC_011833.1 375627 376409 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 375627..376409 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262601 YP_002468088.1 CDS flgH NC_011833.1 376493 377209 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 376493..377209 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262602 YP_002468089.1 CDS flgI NC_011833.1 377390 378547 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 377390..378547 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262603 YP_002468090.1 CDS flgJ NC_011833.1 378547 378846 D flagellar protein FlgJ 378547..378846 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262604 YP_002468091.1 CDS flgK NC_011833.1 378947 380578 D flagellar hook-associated protein 1 378947..380578 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262605 YP_002468092.1 CDS rne NC_011833.1 380743 383451 R RNAse E; ribonuclease E complement(380743..383451) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262606 YP_002468093.1 CDS rluC NC_011833.1 383786 384730 D ribosomal large subunit pseudouridine synthase C; ribosomal large subunit pseudouridine synthase C 383786..384730 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262607 YP_002468094.1 CDS rpmF NC_011833.1 384776 384940 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 384776..384940 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262608 YP_002468095.1 CDS fabG NC_011833.1 386307 387041 D 3-oxoacyl-[acyl-carrier-protein] reductase; 3-oxoacyl-ACP reductase 386307..387041 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262609 YP_002468096.1 CDS acpP NC_011833.1 387118 387360 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 387118..387360 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262610 YP_002468097.1 CDS tmk NC_011833.1 387431 388069 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 387431..388069 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262611 YP_002468098.1 CDS holB NC_011833.1 388066 389046 D DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' 388066..389046 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262612 YP_002468099.1 CDS ycfH NC_011833.1 389080 389874 D metallodependent hydrolase (YcfH) 389080..389874 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262613 YP_002468100.1 CDS ptsG NC_011833.1 389970 391403 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunit IIBC 389970..391403 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262614 YP_002468101.1 CDS hinT NC_011833.1 391423 391767 D purine nucleoside phosphoramidase (YcfF) 391423..391767 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262615 YP_002468102.1 CDS ycfM NC_011833.1 391844 392353 D outer membrane lipoprotein (YcfM) 391844..392353 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262616 YP_002468103.1 CDS ompF NC_011833.1 392602 393750 R OmpF-like porin complement(392602..393750) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262617 YP_002468104.1 CDS asnC NC_011833.1 393890 395290 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(393890..395290) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262618 YP_002468105.1 CDS pncB NC_011833.1 395438 396637 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(395438..396637) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262619 YP_002468106.1 CDS pyrD NC_011833.1 397059 397922 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 397059..397922 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262620 YP_002468107.1 CDS rlmL NC_011833.1 398098 400203 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 398098..400203 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262621 YP_002468108.1 CDS uup NC_011833.1 400223 402013 D ABC transporter ATP-binding protein 400223..402013 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262622 YP_002468109.1 CDS yceA NC_011833.1 402017 402991 R hypothetical protein complement(402017..402991) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262623 YP_002468110.1 CDS valS NC_011833.1 403048 405915 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(403048..405915) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262624 YP_002468111.1 CDS pepA NC_011833.1 405992 407491 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(405992..407491) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262625 YP_002468112.1 CDS argF NC_011833.1 407751 408767 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.; ornithine carbamoyltransferase subunit I 407751..408767 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262626 YP_002468113.1 CDS pyrB NC_011833.1 408886 409818 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 408886..409818 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262627 YP_002468114.1 CDS pyrI NC_011833.1 409826 410290 D involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 409826..410290 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262628 YP_002468115.1 CDS tdcF NC_011833.1 410336 410722 D L-PSP (mRNA) endoribonuclease (YhaR) 410336..410722 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262629 YP_002468116.1 CDS deaD NC_011833.1 410809 412614 R ATP-dependent RNA helicase DeaD complement(410809..412614) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262630 YP_002468117.1 CDS pnp NC_011833.1 412995 415118 R polynucleotide phosphorylase/polyadenylase complement(412995..415118) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262631 YP_002468118.1 CDS rpsO NC_011833.1 415320 415589 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(415320..415589) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262632 YP_002468119.1 CDS truB NC_011833.1 415694 416632 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(415694..416632) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262633 YP_002468120.1 CDS rbfA NC_011833.1 416670 417032 R ribosome-binding factor A complement(416670..417032) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262551 YP_002468121.1 CDS infB NC_011833.1 417078 419672 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(417078..419672) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262388 YP_002468122.1 CDS nusA NC_011833.1 419690 421180 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(419690..421180) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262389 YP_002468123.1 CDS secG NC_011833.1 421653 421982 R protein translocase subunit secG; preprotein translocase subunit SecG complement(421653..421982) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262391 YP_002468124.1 CDS glmM NC_011833.1 422245 423579 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(422245..423579) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262392 YP_002468125.1 CDS hflB NC_011833.1 423799 425634 R membrane protease FtsH catalytic subunit; cell division protein FtsH complement(423799..425634) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262393 YP_002468126.1 CDS greA NC_011833.1 426393 426872 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(426393..426872) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262395 YP_002468127.1 CDS yrbA NC_011833.1 427396 427638 D hypothetical protein 427396..427638 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262396 YP_002468128.1 CDS murA NC_011833.1 427700 428950 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 427700..428950 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262397 YP_002468129.1 CDS rplU NC_011833.1 429089 429415 D LSU ribosomal protein L21P; 50S ribosomal protein L21 429089..429415 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262398 YP_002468130.1 CDS rpmA NC_011833.1 429420 429674 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 429420..429674 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262399 YP_002468131.1 CDS obgE NC_011833.1 429826 430830 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 429826..430830 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262400 YP_002468132.1 CDS rpsI NC_011833.1 430898 431290 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(430898..431290) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262401 YP_002468133.1 CDS rplM NC_011833.1 431311 431739 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(431311..431739) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262402 YP_002468134.1 CDS pheA NC_011833.1 431991 433148 D chorismate mutase 431991..433148 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262403 YP_002468135.1 CDS ffh NC_011833.1 433330 434685 D signal recognition particle subunit FFH/SRP54 (srp54); signal recognition particle protein 433330..434685 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262404 YP_002468136.1 CDS rpsP NC_011833.1 434794 435033 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 434794..435033 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262405 YP_002468137.1 CDS rimM NC_011833.1 435035 435565 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 435035..435565 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262406 YP_002468138.1 CDS trmD NC_011833.1 435580 436293 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 435580..436293 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262407 YP_002468139.1 CDS rplS NC_011833.1 436392 436739 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 436392..436739 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262408 YP_002468140.1 CDS tldD NC_011833.1 436823 438274 R microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62; TldD protein complement(436823..438274) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262409 YP_002468141.1 CDS aroD NC_011833.1 438432 438884 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 438432..438884 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262410 YP_002468142.1 CDS fis NC_011833.1 439076 439372 R DNA-binding protein Fis; factor-for-inversion stimulation protein complement(439076..439372) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262411 YP_002468143.1 CDS rluD NC_011833.1 439541 440479 R ribosomal large subunit pseudouridine synthase D; ribosomal large subunit pseudouridine synthase D complement(439541..440479) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262412 YP_002468144.1 CDS yfiO NC_011833.1 440644 441384 D hypothetical 27.8 kDa lipoprotein 440644..441384 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262413 YP_002468145.1 CDS alaS NC_011833.1 441550 444186 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 441550..444186 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262414 YP_002468146.1 CDS csrA NC_011833.1 444381 444554 D carbon storage regulator 444381..444554 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262415 YP_002468147.1 CDS gshA NC_011833.1 445012 446568 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 445012..446568 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262418 YP_002468148.1 CDS metK NC_011833.1 446715 447851 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(446715..447851) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262419 YP_002468149.1 CDS endA NC_011833.1 448086 448838 D endonuclease I 448086..448838 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262420 YP_002468150.1 CDS rsmE NC_011833.1 448810 449571 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 448810..449571 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262421 YP_002468151.1 CDS rpiA NC_011833.1 449645 450316 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(449645..450316) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262422 YP_002468152.1 CDS glnS NC_011833.1 450943 452658 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 450943..452658 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262426 YP_002468153.1 CDS pyrG NC_011833.1 452832 454469 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 452832..454469 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262427 YP_002468154.1 CDS eno NC_011833.1 454499 455803 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 454499..455803 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262428 YP_002468155.1 CDS nlpD NC_011833.1 455959 456963 R lipoprotein NlpD complement(455959..456963) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262429 YP_002468156.1 CDS ispF NC_011833.1 457053 457538 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(457053..457538) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262430 YP_002468157.1 CDS ispD NC_011833.1 457554 458267 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(457554..458267) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262431 YP_002468158.1 CDS ftsB NC_011833.1 458350 458565 R cell division protein FtsB (YgbQ); essential cell division protein FtsB (YgbQ) complement(458350..458565) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262432 YP_002468159.1 CDS cysC NC_011833.1 458623 459243 R adenylylsulfate kinase complement(458623..459243) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262433 YP_002468160.1 CDS cysN NC_011833.1 459244 460665 R sulfate adenylyltransferase subunit 1; sulfate adenylyltransferase complement(459244..460665) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262434 YP_002468161.1 CDS cysD NC_011833.1 460684 461592 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(460684..461592) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262435 YP_002468162.1 CDS cysG NC_011833.1 461602 463023 R uroporphyrinogen-III C-methyltransferase; ferrochelatase complement(461602..463023) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262436 YP_002468163.1 CDS cysH NC_011833.1 463362 464096 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(463362..464096) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262437 YP_002468164.1 CDS cysI NC_011833.1 464112 465821 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(464112..465821) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262438 YP_002468165.1 CDS cysJ NC_011833.1 465821 467626 R sulfite reductase (NADPH) alpha subunit; sulfite reductase (NADPH) flavoprotein alpha-component complement(465821..467626) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262439 YP_002468166.1 CDS mutS NC_011833.1 467817 470225 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(467817..470225) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262440 YP_002468167.1 CDS dsbA NC_011833.1 470382 471020 D thiol:disulfide interchange protein DsbA precursor 470382..471020 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262441 YP_002468168.1 CDS polA NC_011833.1 471141 472001 D DNA polymerase I 471141..472001 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262442 YP_002468169.1 CDS engB NC_011833.1 472064 472681 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(472064..472681) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262443 YP_002468170.1 CDS typA NC_011833.1 472932 474755 D GTP-binding protein BipA 472932..474755 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262444 YP_002468171.1 CDS gmk NC_011833.1 474878 475501 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(474878..475501) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262445 YP_002468172.1 CDS ygfZ NC_011833.1 475601 476560 R folate-binding protein (YgfZ) complement(475601..476560) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262446 YP_002468173.1 CDS prfB NC_011833.1 476779 477828 D bacterial peptide chain release factor 2 (bRF-2); peptide chain release factor 2 476779..477828 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262447 YP_002468174.1 CDS lysS NC_011833.1 477838 479358 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 477838..479358 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262448 YP_002468175.1 CDS lysA NC_011833.1 479424 480671 D catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 479424..480671 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262449 YP_002468176.1 CDS lgt NC_011833.1 480737 481582 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 480737..481582 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262450 YP_002468177.1 CDS thyA NC_011833.1 481596 482390 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 481596..482390 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262451 YP_002468178.1 CDS miaB NC_011833.1 482458 483777 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 482458..483777 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262452 YP_002468179.1 CDS ybeY NC_011833.1 483931 484266 D hypothetical protein 483931..484266 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262453 YP_002468180.1 CDS ybeX NC_011833.1 484347 485222 D hypothetical protein 484347..485222 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262454 YP_002468181.1 CDS leuS NC_011833.1 485326 487905 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 485326..487905 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262455 YP_002468182.1 CDS holA NC_011833.1 487945 488940 D DNA polymerase III, delta subunit; DNA polymerase III subunit delta 487945..488940 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262456 YP_002468183.1 CDS nadD NC_011833.1 488963 489607 D nicotinate-nucleotide adenylyltransferase; nicotinate-mononucleotide adenylyltransferase (YbeN) 488963..489607 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262457 YP_002468184.1 CDS sirA NC_011833.1 489668 489898 D TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 489668..489898 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262458 YP_002468185.1 CDS asd NC_011833.1 490045 491160 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(490045..491160) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262459 YP_002468186.1 CDS yhgN NC_011833.1 491456 492046 D YhgN; Ec0197; hydrolyzes nucleoside triphosphates with an O6 atom-containing purine base to nucleoside monophosphate and pyrophosphate; seems to play a role in the elimination of aberrant purine-derived nucleotides containing the 6-keto group; shows preference for deoxyinosine triphosphate and xanthosine triphosphate over standard nucleoside triphosphates (dATP, dCTP, dGTP, and dTTP); putative dITP- and XTP- hydrolase 491456..492046 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262460 YP_002468187.1 CDS pgk NC_011833.1 492159 493331 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 492159..493331 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262461 YP_002468188.1 CDS fba NC_011833.1 493347 494423 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 493347..494423 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262462 YP_002468189.1 CDS yggB NC_011833.1 494559 495404 D mechanosensitive channel MscS 494559..495404 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262463 YP_002468190.1 CDS recC NC_011833.1 495463 498687 D DNA helicase/exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V 125 kDa polypeptide 495463..498687 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262464 YP_002468191.1 CDS recB NC_011833.1 498692 502216 D DNA helicase/exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V 135 kDa polypeptide 498692..502216 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262465 YP_002468192.1 CDS recD NC_011833.1 502222 504030 D DNA helicase/exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V 67 kDa polypeptide 502222..504030 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262466 YP_002468193.1 CDS argA NC_011833.1 504069 505397 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(504069..505397) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262467 YP_002468194.1 CDS mltA NC_011833.1 505764 506843 D membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 505764..506843 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262386 YP_002468195.1 CDS ribH NC_011833.1 506882 507364 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 506882..507364 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262214 YP_002468196.1 CDS thiL NC_011833.1 507394 508365 D thiamin-monophosphate kinase 507394..508365 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262215 YP_002468197.1 CDS ribD1 NC_011833.1 508421 508846 D diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin deaminase 508421..508846 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262216 YP_002468198.1 CDS ribD2 NC_011833.1 508889 509512 D 5-amino-6-(5-phosphoribosylamino)uracil reductase; riboflavin reductase 508889..509512 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262217 YP_002468199.1 CDS nusB NC_011833.1 509549 509980 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 509549..509980 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262218 YP_002468200.1 CDS dxs NC_011833.1 510035 511861 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(510035..511861) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262219 YP_002468201.1 CDS ispA NC_011833.1 511919 512767 R farnesyl-diphosphate synthase; geranyltranstransferase complement(511919..512767) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262220 YP_002468202.1 CDS yajR NC_011833.1 512819 513991 R hypothetical protein complement(512819..513991) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262221 YP_002468203.1 CDS yccK NC_011833.1 514065 514409 D hypothetical protein 514065..514409 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262222 YP_002468204.1 CDS cyoE NC_011833.1 514430 515287 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(514430..515287) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262223 YP_002468205.1 CDS cyoD NC_011833.1 515315 515632 R cytochrome O ubiquinol oxidase subunit IV complement(515315..515632) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262224 YP_002468206.1 CDS cyoC NC_011833.1 515632 516249 R cytochrome O ubiquinol oxidase subunit III complement(515632..516249) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262225 YP_002468207.1 CDS cyoB NC_011833.1 516246 518234 R cytochrome O ubiquinol oxidase subunit I complement(516246..518234) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262226 YP_002468208.1 CDS cyoA NC_011833.1 518239 519129 R cytochrome O ubiquinol oxidase subunit II complement(518239..519129) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262227 YP_002468209.1 CDS bolA NC_011833.1 519428 519742 D transcriptional regulator BolA; BolA protein 519428..519742 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262228 YP_002468210.1 CDS tig NC_011833.1 519877 521205 D trigger factor 519877..521205 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262229 YP_002468211.1 CDS clpP NC_011833.1 521340 521966 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 521340..521966 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262230 YP_002468212.1 CDS clpX NC_011833.1 522065 523354 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 522065..523354 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262231 YP_002468213.1 CDS lon NC_011833.1 523546 525879 D Lon-A peptidase. Serine peptidase. MEROPS family S16; ATP-dependent protease LA 523546..525879 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262232 YP_002468214.1 CDS ppiD NC_011833.1 526021 527892 D peptidyl-prolyl cis-trans isomerase D 526021..527892 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262233 YP_002468215.1 CDS mdl NC_011833.1 528859 530628 D multidrug resistance-like ATP-binding protein Mdl 528859..530628 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262234 YP_002468216.1 CDS mdlB NC_011833.1 530600 532372 D multidrug resistance-like ATP-binding protein MdlB 530600..532372 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262235 YP_002468217.1 CDS dnaX NC_011833.1 532667 533752 D DNA polymerase III, gamma subunit; DNA polymerase III subunits gamma and tau 532667..533752 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262236 YP_002468218.1 CDS ybaB NC_011833.1 534072 534401 D hypothetical protein 534072..534401 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262237 YP_002468219.1 CDS htpG NC_011833.1 534547 536421 D molecular chaperone; heat shock protein 90 534547..536421 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262238 YP_002468220.1 CDS adk NC_011833.1 536494 537141 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 536494..537141 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262239 YP_002468221.1 CDS folD NC_011833.1 537372 538229 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 537372..538229 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262241 YP_002468222.1 CDS cysS NC_011833.1 538226 539620 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(538226..539620) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262242 YP_002468223.1 CDS ybeD NC_011833.1 539881 540144 D hypothetical protein 539881..540144 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262243 YP_002468224.1 CDS cspE NC_011833.1 540251 540460 R member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE complement(540251..540460) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262244 YP_002468225.1 CDS aroE NC_011833.1 544274 545095 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(544274..545095) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262248 YP_002468226.1 CDS rimN NC_011833.1 545088 545615 R dsRNA-binding protein, putative ribosome maturation factor (YrdC) complement(545088..545615) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262249 YP_002468227.1 CDS smg NC_011833.1 545713 546186 R Smg protein complement(545713..546186) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262250 YP_002468228.1 CDS def NC_011833.1 546430 546951 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 546430..546951 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262251 YP_002468229.1 CDS fmt NC_011833.1 546959 547903 D methionyl-tRNA formyltransferase 546959..547903 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262252 YP_002468230.1 CDS rplQ NC_011833.1 548031 548423 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(548031..548423) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262253 YP_002468231.1 CDS rpoA NC_011833.1 548468 549457 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(548468..549457) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262254 YP_002468232.1 CDS rpsD NC_011833.1 549486 550106 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(549486..550106) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262255 YP_002468233.1 CDS rpsK NC_011833.1 550132 550527 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(550132..550527) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262256 YP_002468234.1 CDS rpsM NC_011833.1 550545 550901 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(550545..550901) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262257 YP_002468235.1 CDS rpmJ NC_011833.1 550995 551111 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(550995..551111) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262258 YP_002468236.1 CDS secY NC_011833.1 551137 552450 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(551137..552450) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262259 YP_002468237.1 CDS rplO NC_011833.1 552461 552895 R late assembly protein; 50S ribosomal protein L15 complement(552461..552895) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262260 YP_002468238.1 CDS rpmD NC_011833.1 552900 553079 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(552900..553079) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262261 YP_002468239.1 CDS rpsE NC_011833.1 553089 553592 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(553089..553592) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262262 YP_002468240.1 CDS rplR NC_011833.1 553608 553976 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(553608..553976) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262263 YP_002468241.1 CDS rplF NC_011833.1 553978 554535 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(553978..554535) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262264 YP_002468242.1 CDS rpsH NC_011833.1 554525 554917 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(554525..554917) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262265 YP_002468243.1 CDS rpsN NC_011833.1 554946 555251 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(554946..555251) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262266 YP_002468244.1 CDS rplE NC_011833.1 555269 555808 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(555269..555808) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262267 YP_002468245.1 CDS rplX NC_011833.1 555823 556137 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(555823..556137) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262268 YP_002468246.1 CDS rplN NC_011833.1 556163 556531 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(556163..556531) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262269 YP_002468247.1 CDS rpsQ NC_011833.1 556645 556896 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(556645..556896) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262270 YP_002468248.1 CDS rpmC NC_011833.1 556896 557093 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(556896..557093) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262271 YP_002468249.1 CDS rplP NC_011833.1 557093 557503 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(557093..557503) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262272 YP_002468250.1 CDS rpsC NC_011833.1 557524 558225 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(557524..558225) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262273 YP_002468251.1 CDS rplV NC_011833.1 558244 558576 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(558244..558576) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262274 YP_002468252.1 CDS rpsS NC_011833.1 558612 558890 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(558612..558890) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262275 YP_002468253.1 CDS rplB NC_011833.1 558910 559731 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(558910..559731) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262276 YP_002468254.1 CDS rplW NC_011833.1 559746 560048 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(559746..560048) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262277 YP_002468255.1 CDS rplD NC_011833.1 560045 560650 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(560045..560650) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262278 YP_002468256.1 CDS rplC NC_011833.1 560668 561297 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(560668..561297) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262279 YP_002468257.1 CDS rpsJ NC_011833.1 561328 561639 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(561328..561639) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262280 YP_002468258.1 CDS tufB NC_011833.1 561970 563154 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(561970..563154) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262281 YP_002468259.1 CDS fusA NC_011833.1 563222 565330 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(563222..565330) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262282 YP_002468260.1 CDS rpsG NC_011833.1 565445 565915 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(565445..565915) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262283 YP_002468261.1 CDS rpsL NC_011833.1 565957 566331 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(565957..566331) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262284 YP_002468262.1 CDS yheL NC_011833.1 566465 566752 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusB complement(566465..566752) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262285 YP_002468263.1 CDS yheM NC_011833.1 566764 567123 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC complement(566764..567123) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262286 YP_002468264.1 CDS yheN NC_011833.1 567142 567528 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD complement(567142..567528) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262287 YP_002468265.1 CDS fkpA NC_011833.1 567611 568336 R FKBP-type peptidyl-prolyl cis-trans isomerase FkpA complement(567611..568336) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262288 YP_002468266.1 CDS argD NC_011833.1 568798 570024 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(568798..570024) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262289 YP_002468267.1 CDS yhfC NC_011833.1 570341 571507 D hypothetical protein 570341..571507 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262290 YP_002468268.1 CDS trpS NC_011833.1 571569 572576 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(571569..572576) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262291 YP_002468269.1 CDS rpe NC_011833.1 572599 573285 R ribulose-5-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(572599..573285) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262292 YP_002468270.1 CDS aroB NC_011833.1 574168 575259 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(574168..575259) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262293 YP_002468271.1 CDS aroK NC_011833.1 575277 575798 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(575277..575798) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262294 YP_002468272.1 CDS deoD NC_011833.1 576401 577105 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(576401..577105) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262296 YP_002468273.1 CDS deoB NC_011833.1 577149 578372 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(577149..578372) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262297 YP_002468274.1 CDS prfC NC_011833.1 578432 580012 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(578432..580012) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262298 YP_002468275.1 CDS nfuA NC_011833.1 581124 581702 R iron-sulfur cluster scaffold protein (YhgI) complement(581124..581702) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262299 YP_002468276.1 CDS ssb NC_011833.1 582315 582830 R single-strand binding protein complement(582315..582830) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262300 YP_002468277.1 CDS dnaB NC_011833.1 583500 584897 D primary replicative DNA helicase; replicative DNA helicase 583500..584897 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262301 YP_002468278.1 CDS gshB NC_011833.1 585144 586106 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 585144..586106 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262302 YP_002468279.1 CDS yqgF NC_011833.1 586117 586524 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 586117..586524 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262303 YP_002468280.1 CDS yggS NC_011833.1 586642 587244 D hypothetical protein 586642..587244 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262304 YP_002468281.1 CDS yggW NC_011833.1 587287 588417 D coproporphyrinogen III oxidase, anaerobic; oxidoreductase (YggW) 587287..588417 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262305 YP_002468282.1 CDS trmB NC_011833.1 588424 589143 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(588424..589143) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262306 YP_002468283.1 CDS mutY NC_011833.1 589241 590293 D A/G-specific DNA-adenine glycosylase; A/G-specific adenine glycosylase 589241..590293 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262307 YP_002468284.1 CDS yggX NC_011833.1 590265 590546 D hypothetical protein 590265..590546 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262308 YP_002468285.1 CDS murI NC_011833.1 590640 591428 D glutamate racemase 590640..591428 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262309 YP_002468286.1 CDS yeeX NC_011833.1 592941 593249 D hypothetical protein 592941..593249 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262311 YP_002468287.1 CDS pyrE NC_011833.1 593630 594271 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 593630..594271 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262314 YP_002468288.1 CDS dut NC_011833.1 594283 594747 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(594283..594747) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262315 YP_002468289.1 CDS cysQ NC_011833.1 594791 595588 R CysQ protein complement(594791..595588) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262316 YP_002468290.1 CDS rplI NC_011833.1 595575 596027 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(595575..596027) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262317 YP_002468291.1 CDS rpsR NC_011833.1 596076 596303 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(596076..596303) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262318 YP_002468292.1 CDS rpsF NC_011833.1 596429 596770 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(596429..596770) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262319 YP_002468293.1 CDS vacB NC_011833.1 596936 599173 R RNAse R; VacB protein complement(596936..599173) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262320 YP_002468294.1 CDS purA NC_011833.1 599261 600562 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(599261..600562) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262321 YP_002468295.1 CDS hflC NC_011833.1 600612 601544 R with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC complement(600612..601544) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262322 YP_002468296.1 CDS hflK NC_011833.1 601547 602767 R HflK protein complement(601547..602767) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262323 YP_002468297.1 CDS miaA NC_011833.1 602924 603832 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(602924..603832) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262324 YP_002468298.1 CDS mutL NC_011833.1 603870 605624 R DNA mismatch repair protein MutL complement(603870..605624) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262325 YP_002468299.1 CDS mtlD NC_011833.1 605724 606881 R D-mannitol 1-phosphate 5-dehydrogenase; mannitol-1-phosphate 5-dehydrogenase complement(605724..606881) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262326 YP_002468300.1 CDS mtlA NC_011833.1 606923 608821 R PTS system mannitol-specific transporter subunit IIABC complement(606923..608821) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262327 YP_002468301.1 CDS pgi NC_011833.1 608995 610644 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(608995..610644) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262328 YP_002468302.1 CDS orn NC_011833.1 610958 611512 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 610958..611512 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262329 YP_002468303.1 CDS amiB NC_011833.1 611965 612678 D N-acetylmuramoyl-L-alanine amidase 611965..612678 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262331 YP_002468304.1 CDS rpmE NC_011833.1 612785 613003 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(612785..613003) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262332 YP_002468305.1 CDS hslV NC_011833.1 613609 614121 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 613609..614121 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262333 YP_002468306.1 CDS hslU NC_011833.1 614134 615465 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 614134..615465 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262334 YP_002468307.1 CDS ibpA NC_011833.1 615672 616145 D 16 kDa heat shock protein A 615672..616145 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262335 YP_002468308.1 CDS fpr NC_011833.1 616222 616980 D ferredoxin-NADP reductase 616222..616980 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262336 YP_002468309.1 CDS yjeA NC_011833.1 616998 617972 R lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase complement(616998..617972) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262337 YP_002468310.1 CDS coaD NC_011833.1 618043 618540 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 618043..618540 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262338 YP_002468311.1 CDS yba3 NC_011833.1 618627 619730 R hypothetical protein complement(618627..619730) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262339 YP_002468312.1 CDS yba4 NC_011833.1 619723 620061 R hypothetical protein complement(619723..620061) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262340 YP_002468313.1 CDS yhiQ NC_011833.1 620217 620957 D SAM-dependent methyltransferase (YhiQ) 620217..620957 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262341 YP_002468314.1 CDS pitA NC_011833.1 621040 622512 R low-affinity inorganic phosphate transporter complement(621040..622512) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262342 YP_002468315.1 CDS dapF NC_011833.1 623931 624785 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(623931..624785) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262344 YP_002468316.1 CDS cyaY NC_011833.1 624974 625324 D CyaY protein 624974..625324 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262345 YP_002468317.1 CDS hemC NC_011833.1 625453 626397 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 625453..626397 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262346 YP_002468318.1 CDS rho NC_011833.1 627635 628894 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(627635..628894) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262715 YP_002468319.1 CDS trxA NC_011833.1 629024 629350 R thioredoxin complement(629024..629350) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262716 YP_002468320.1 CDS rep NC_011833.1 629552 631489 R ATP-dependent DNA helicase Rep complement(629552..631489) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262717 YP_002468321.1 CDS ilvC NC_011833.1 631559 633031 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(631559..633031) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262718 YP_002468322.1 CDS ilvD NC_011833.1 633079 634932 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(633079..634932) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262719 YP_002468323.1 CDS mitF NC_011833.1 635421 636635 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 635421..636635 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262721 YP_002468324.1 CDS iscU NC_011833.1 636666 637049 D scaffold protein 636666..637049 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262722 YP_002468325.1 CDS hscB NC_011833.1 637144 637668 D chaperone protein HscB 637144..637668 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262723 YP_002468326.1 CDS hscA NC_011833.1 637680 639515 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 637680..639515 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262724 YP_002468327.1 CDS fdx NC_011833.1 639515 639850 D ferredoxin 2fe-2s 639515..639850 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262725 YP_002468328.1 CDS engA NC_011833.1 639847 641208 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(639847..641208) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262726 YP_002468329.1 CDS yfgM NC_011833.1 641301 641882 R hypothetical protein complement(641301..641882) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262727 BUAP5A_017 tRNA BUAP5A_017 NC_011833.1 18027 18099 R tRNA-Phe complement(18027..18099) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262363 BUAP5A_040 tRNA BUAP5A_040 NC_011833.1 48485 48557 R tRNA-Thr complement(48485..48557) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262713 BUAP5A_041 tRNA BUAP5A_041 NC_011833.1 48573 48644 R tRNA-Gly complement(48573..48644) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262730 BUAP5A_042 tRNA BUAP5A_042 NC_011833.1 48667 48751 R tRNA-Tyr complement(48667..48751) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262731 BUAP5A_043 tRNA BUAP5A_043 NC_011833.1 48767 48839 R tRNA-Thr complement(48767..48839) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262732 BUAP5A_067 tRNA BUAP5A_067 NC_011833.1 74473 74545 R tRNA-Lys complement(74473..74545) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262756 BUAP5A_068 tRNA BUAP5A_068 NC_011833.1 74574 74646 R tRNA-Val complement(74574..74646) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262757 BUAP5A_070 tRNA BUAP5A_070 NC_011833.1 76350 76425 D tRNA-Ala 76350..76425 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262759 BUAP5A_109 tRNA BUAP5A_109 NC_011833.1 117008 117081 R tRNA-Val complement(117008..117081) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262797 BUAP5A_240 tRNA BUAP5A_240 NC_011833.1 276785 276861 D tRNA-Ile 276785..276861 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262505 BUAP5A_241 tRNA BUAP5A_241 NC_011833.1 276876 276948 D tRNA-Ala 276876..276948 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262506 BUAP5A_244 tRNA BUAP5A_244 NC_011833.1 279043 279116 D tRNA-Asp 279043..279116 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262509 BUAP5A_322 tRNA BUAP5A_322 NC_011833.1 365953 366036 R tRNA-Leu complement(365953..366036) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262588 BUAP5A_323 tRNA BUAP5A_323 NC_011833.1 366048 366121 R tRNA-Cys complement(366048..366121) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262589 BUAP5A_325 tRNA BUAP5A_325 NC_011833.1 366293 366377 D tRNA-Ser 366293..366377 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262590 BUAP5A_372 tRNA BUAP5A_372 NC_011833.1 421519 421604 R tRNA-Leu complement(421519..421604) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262390 BUAP5A_398 tRNA BUAP5A_398 NC_011833.1 444710 444801 D tRNA-Ser 444710..444801 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262416 BUAP5A_399 tRNA BUAP5A_399 NC_011833.1 444819 444892 D tRNA-Arg 444819..444892 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262417 BUAP5A_405 tRNA BUAP5A_405 NC_011833.1 450500 450574 R tRNA-Gln complement(450500..450574) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262423 BUAP5A_406 tRNA BUAP5A_406 NC_011833.1 450668 450749 R tRNA-Leu complement(450668..450749) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262424 BUAP5A_407 tRNA BUAP5A_407 NC_011833.1 450761 450837 R tRNA-Met complement(450761..450837) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262425 BUAP5A_450 tRNA BUAP5A_450 NC_011833.1 505576 505652 R tRNA-Met complement(505576..505652) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262468 BUAP5A_478 tRNA BUAP5A_478 NC_011833.1 537144 537217 R tRNA-Arg complement(537144..537217) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262240 BUAP5A_485 tRNA BUAP5A_485 NC_011833.1 544049 544121 R tRNA-Glu complement(544049..544121) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262247 BUAP5A_533 tRNA BUAP5A_533 NC_011833.1 576297 576381 D tRNA-Ser 576297..576381 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262552 BUAP5A_550 tRNA BUAP5A_550 NC_011833.1 593256 593328 R tRNA-Asn complement(593256..593328) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262312 BUAP5A_551 tRNA BUAP5A_551 NC_011833.1 593462 593534 D tRNA-Met 593462..593534 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262313 BUAP5A_568 tRNA BUAP5A_568 NC_011833.1 611598 611673 D tRNA-Gly 611598..611673 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262330 BUAP5A_585 tRNA BUAP5A_585 NC_011833.1 627155 627231 R tRNA-Pro complement(627155..627231) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262347 BUAP5A_586 tRNA BUAP5A_586 NC_011833.1 627268 627343 R tRNA-His complement(627268..627343) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262811 BUAP5A_587 tRNA BUAP5A_587 NC_011833.1 627373 627446 R tRNA-Arg complement(627373..627446) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262714 BUAP5A_593 tRNA BUAP5A_593 NC_011833.1 635173 635248 R tRNA-Trp complement(635173..635248) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262720 BUAP5A_239 rRNA BUAP5A_239 NC_011833.1 275192 276731 D 16S ribosomal RNA 275192..276731 Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262504 BUAP5A_483 rRNA BUAP5A_483 NC_011833.1 540748 540862 R 5S ribosomal RNA complement(540748..540862) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262245 BUAP5A_484 rRNA BUAP5A_484 NC_011833.1 540975 543887 R 23S ribosomal RNA complement(540975..543887) Buchnera aphidicola str. 5A (Acyrthosiphon pisum) 7262246