-- dump date 20140619_011821 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 107806000001 SEQ_END SEQ_END NC_002252.1 7258 7258 DR NC_002252.1; contig end 7258..7258 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 107806000002 SEQ_END SEQ_END NC_002253.1 7786 7786 DR NC_002253.1; contig end 7786..7786 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 107806000003 SEQ_END SEQ_END NC_002528.1 640681 640681 DR NC_002528.1; contig end 640681..640681 Buchnera aphidicola str. APS (Acyrthosiphon pisum) NP_057962.1 CDS trpE NC_002252.1 1 1566 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1..1566 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109444 NP_057963.1 CDS trpG NC_002252.1 1569 2171 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1569..2171 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109446 NP_057964.1 CDS trpG2 NC_002252.1 5199 5801 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 5199..5801 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109447 NP_057965.1 CDS repA1 NC_002253.1 346 1197 R replication-associated protein RepA1 complement(346..1197) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109453 NP_057966.1 CDS yqhA NC_002253.1 1514 2017 D hypothetical protein 1514..2017 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109454 NP_057967.1 CDS RepA2 NC_002253.1 2357 2893 D replication-associated protein RepA2 2357..2893 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109448 NP_057968.1 CDS leuA NC_002253.1 3032 4591 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 3032..4591 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109449 NP_057969.1 CDS leuB NC_002253.1 4652 5743 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 4652..5743 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109450 NP_057970.1 CDS leuC NC_002253.1 5733 7160 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 5733..7160 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109451 NP_057971.1 CDS leuD NC_002253.1 7163 7786 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 7163..7786 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109452 NP_239843.1 CDS gidA NC_002528.1 197 2083 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 197..2083 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109510 NP_239844.1 CDS atpB NC_002528.1 2278 3102 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 2278..3102 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109511 NP_239845.1 CDS atpE NC_002528.1 3139 3378 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 3139..3378 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109512 NP_239846.1 CDS atpF NC_002528.1 3497 3982 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B 3497..3982 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109513 NP_239847.1 CDS atpH NC_002528.1 3982 4515 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 3982..4515 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109514 NP_239848.1 CDS atpA NC_002528.1 4530 6068 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 4530..6068 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109515 NP_239849.1 CDS atpG NC_002528.1 6101 6973 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 6101..6973 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109516 NP_239850.1 CDS atpD NC_002528.1 6997 8394 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 6997..8394 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109517 NP_239851.1 CDS atpC NC_002528.1 8421 8837 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon 8421..8837 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109518 NP_239852.1 CDS gyrB NC_002528.1 8911 11322 R DNA gyrase subunit B complement(8911..11322) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109519 NP_239853.1 CDS dnaN NC_002528.1 11449 12549 R DNA polymerase III beta chain complement(11449..12549) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109520 NP_239854.1 CDS dnaA NC_002528.1 12554 13918 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA complement(12554..13918) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109521 NP_239855.1 CDS rpmH NC_002528.1 14369 14512 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 14369..14512 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109522 NP_239856.1 CDS rnpA NC_002528.1 14525 14872 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 14525..14872 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109523 NP_239857.1 CDS yidC NC_002528.1 15011 16609 D hypothetical protein 15011..16609 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109524 NP_239858.2 CDS trmE NC_002528.1 16648 18009 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 16648..18009 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109525 NP_239859.1 CDS groES NC_002528.1 18376 18666 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 18376..18666 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109526 NP_239860.1 CDS groEL NC_002528.1 18715 20361 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 18715..20361 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109527 NP_239861.1 CDS efp NC_002528.1 20985 21596 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 20985..21596 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109528 NP_239862.1 CDS dnaC NC_002528.1 21614 22354 R acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC complement(21614..22354) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109529 NP_239863.1 CDS dnaT NC_002528.1 22354 22848 R This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; primosomal protein DnaI complement(22354..22848) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109530 NP_239864.1 CDS yhhF NC_002528.1 22945 23520 R hypothetical protein complement(22945..23520) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109531 NP_239865.1 CDS ftsY NC_002528.1 23651 24787 D cell division protein FtsY 23651..24787 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109532 NP_239866.1 CDS rpoH NC_002528.1 24950 25804 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 24950..25804 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109533 NP_239867.2 CDS glmS NC_002528.1 25945 27774 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(25945..27774) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109534 NP_239868.1 CDS glmU NC_002528.1 27844 29223 R UDP-N-acetylglucosamine pyrophosphorylase complement(27844..29223) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109535 NP_239869.1 CDS yigL NC_002528.1 29403 29972 D hypothetical protein 29403..29972 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109536 NP_239870.1 CDS cof NC_002528.1 30011 30220 D Cof protein 30011..30220 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109537 NP_239871.1 CDS metE NC_002528.1 31191 33467 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 31191..33467 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109538 NP_239872.1 CDS purH NC_002528.1 33590 35167 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(33590..35167) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109539 NP_239873.1 CDS hupA NC_002528.1 35308 35586 R DNA-binding protein HU-alpha complement(35308..35586) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109540 NP_239874.1 CDS rpoC NC_002528.1 36321 40544 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(36321..40544) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109541 NP_239875.1 CDS rpoB NC_002528.1 40622 44650 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(40622..44650) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109542 NP_239876.1 CDS rplL NC_002528.1 44871 45239 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(44871..45239) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109543 NP_239877.1 CDS rplJ NC_002528.1 45306 45803 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(45306..45803) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109544 NP_239878.1 CDS rplA NC_002528.1 46069 46764 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(46069..46764) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109545 NP_239879.1 CDS rplK NC_002528.1 46767 47195 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(46767..47195) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109546 NP_239880.1 CDS nusG NC_002528.1 47243 47788 R transcription antitermination protein NusG complement(47243..47788) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109547 NP_239881.1 CDS secE NC_002528.1 47791 48174 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(47791..48174) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109548 NP_239882.1 CDS murB NC_002528.1 48981 50051 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(48981..50051) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109549 NP_239883.1 CDS metF NC_002528.1 50166 51044 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 50166..51044 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109550 NP_239884.1 CDS argE NC_002528.1 51056 52201 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(51056..52201) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109551 NP_239885.1 CDS argC NC_002528.1 52362 53366 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 52362..53366 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109455 NP_239886.1 CDS argB NC_002528.1 53387 54160 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 53387..54160 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109456 NP_239887.1 CDS argG NC_002528.1 54190 55401 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 54190..55401 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109457 NP_239888.1 CDS argH NC_002528.1 55473 56852 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 55473..56852 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109458 NP_239889.1 CDS yibN NC_002528.1 56934 57368 D hypothetical protein 56934..57368 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109459 NP_239890.1 CDS secB NC_002528.1 57475 57903 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 57475..57903 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109460 NP_239891.1 CDS cysE NC_002528.1 58005 58829 D serine acetyltransferase 58005..58829 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109461 NP_239892.1 CDS rpoD NC_002528.1 58935 60773 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(58935..60773) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109462 NP_239893.1 CDS dnaG NC_002528.1 60941 62674 R DNA primase complement(60941..62674) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109463 NP_239894.1 CDS rpsU NC_002528.1 62755 62970 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(62755..62970) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109464 NP_239895.1 CDS ygjD NC_002528.1 63204 64214 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 63204..64214 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109465 NP_239896.1 CDS ribB NC_002528.1 64192 64839 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(64192..64839) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109466 NP_239897.1 CDS yb3052 NC_002528.1 65111 66058 R kinase complement(65111..66058) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109467 NP_239898.1 CDS cca NC_002528.1 66272 67516 D catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 66272..67516 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109468 NP_239899.1 CDS bacA NC_002528.1 67542 68339 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase complement(67542..68339) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109469 NP_239900.1 CDS crr NC_002528.1 68425 68910 R functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter complement(68425..68910) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109470 NP_239901.1 CDS ptsI NC_002528.1 68960 70675 R Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase complement(68960..70675) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109471 NP_239902.1 CDS ptsH NC_002528.1 70824 71081 R phosphocarrier protein HPr complement(70824..71081) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109472 NP_239903.1 CDS cysK NC_002528.1 71230 72177 R cysteine synthase A complement(71230..72177) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109473 NP_239904.1 CDS lig NC_002528.1 72432 74459 D DNA ligase 72432..74459 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109474 NP_239905.1 CDS gltX NC_002528.1 74771 76174 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 74771..76174 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109475 NP_239906.1 CDS fliE NC_002528.1 76514 76810 R flagellar hook-basal body complex protein FliE complement(76514..76810) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109476 NP_239907.1 CDS fliF NC_002528.1 77074 78711 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 77074..78711 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109477 NP_239908.1 CDS fliG NC_002528.1 78708 79703 D flagellar motor switch protein FliG 78708..79703 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109478 NP_239909.1 CDS fliH NC_002528.1 79696 80358 D flagellar assembly protein FliH 79696..80358 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109479 NP_239910.1 CDS fliI NC_002528.1 80316 81719 D flagellum-specific ATP synthase 80316..81719 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109480 NP_239911.1 CDS fliJ NC_002528.1 81749 82186 D flagellar FliJ protein 81749..82186 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109481 NP_239913.1 CDS fliK NC_002528.1 82624 83331 D flagellar hook-length control protein 82624..83331 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109483 NP_239914.1 CDS fliM NC_002528.1 83392 84339 D flagellar motor switch protein FliM 83392..84339 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109484 NP_239915.1 CDS fliN NC_002528.1 84332 84733 D flagellar motor switch protein FliN 84332..84733 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109485 NP_239916.1 CDS fliP NC_002528.1 84745 85884 D putative bifunctional flagellar biosynthesis protein FliO/FliP 84745..85884 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109486 NP_239917.1 CDS fliQ NC_002528.1 85956 86225 D flagellar biosynthetic protein FliQ 85956..86225 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109487 NP_239918.1 CDS fliR NC_002528.1 86225 87001 D flagellar biosynthetic protein FliR 86225..87001 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109488 NP_239919.1 CDS rpmG NC_002528.1 87154 87321 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(87154..87321) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109489 NP_239920.1 CDS rpmB NC_002528.1 87332 87559 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(87332..87559) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109490 NP_239921.1 CDS ytfN NC_002528.1 87905 90817 D hypothetical protein 87905..90817 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109491 NP_239922.1 CDS ppa NC_002528.1 90833 91381 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(90833..91381) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109492 NP_239923.1 CDS pmbA NC_002528.1 91575 92915 D PmbA protein 91575..92915 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109493 NP_239924.1 CDS yraL NC_002528.1 93393 94241 R hypothetical protein complement(93393..94241) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109494 NP_239925.1 CDS fabB NC_002528.1 94380 95600 D 3-oxoacyl-ACP synthase 94380..95600 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109495 NP_239926.1 CDS talA NC_002528.1 95840 96790 D Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 95840..96790 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109496 NP_239927.1 CDS tktB NC_002528.1 96845 98842 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 96845..98842 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109497 NP_239928.1 CDS dapE NC_002528.1 98947 100074 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 98947..100074 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109498 NP_239929.1 CDS dapA NC_002528.1 100464 101348 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(100464..101348) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109499 NP_239930.1 CDS aroC NC_002528.1 101924 102988 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(101924..102988) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109500 NP_239931.1 CDS yb2331 NC_002528.1 103284 103844 D hypothetical protein 103284..103844 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109501 NP_239932.1 CDS hisG NC_002528.1 104169 105068 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 104169..105068 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109502 NP_239933.1 CDS hisD NC_002528.1 105077 106384 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 105077..106384 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109503 NP_239934.1 CDS hisC NC_002528.1 106381 107487 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 106381..107487 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109504 NP_239935.1 CDS hisB NC_002528.1 107477 108538 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 107477..108538 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109505 NP_239936.1 CDS hisH NC_002528.1 108538 109128 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 108538..109128 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109506 NP_239937.1 CDS hisA NC_002528.1 109133 109873 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 109133..109873 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109507 NP_239938.1 CDS hisF NC_002528.1 109852 110628 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 109852..110628 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109508 NP_239939.1 CDS hisI NC_002528.1 110622 111269 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 110622..111269 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109509 NP_239940.1 CDS gnd NC_002528.1 111628 113034 D decarboxylating; catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 111628..113034 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109552 NP_239941.2 CDS dcd NC_002528.1 113236 113817 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 113236..113817 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109553 NP_239942.1 CDS metG NC_002528.1 113965 115608 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 113965..115608 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109554 NP_239943.1 CDS mesJ NC_002528.1 115656 116978 R cell cycle protein MesJ complement(115656..116978) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109555 NP_239944.1 CDS ribE NC_002528.1 117204 117830 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 117204..117830 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109556 NP_239945.1 CDS rnfA NC_002528.1 117867 118448 D Na(+)-translocating NADH-quinone reductase subunit E 117867..118448 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109557 NP_239946.1 CDS rnfB NC_002528.1 118451 118954 D ferredoxin II 118451..118954 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109558 NP_239947.1 CDS rnfC NC_002528.1 119117 120538 D hypothetical protein 119117..120538 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109559 NP_239948.2 CDS ydgO NC_002528.1 120586 121629 D hypothetical protein 120586..121629 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109560 NP_239949.1 CDS rnfG NC_002528.1 121778 122272 D nitrogen fixation protein 121778..122272 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109561 NP_239950.1 CDS ydgQ NC_002528.1 122247 122930 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 122247..122930 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109562 NP_239951.1 CDS nth NC_002528.1 122941 123573 D endonuclease III 122941..123573 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109563 NP_239952.2 CDS priA NC_002528.1 123596 125776 D primosomal protein N' 123596..125776 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109564 NP_239953.1 CDS tyrS NC_002528.1 125936 127204 D tyrosyl-tRNA synthetase 125936..127204 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109565 NP_239954.1 CDS ydiC NC_002528.1 127212 127604 R hypothetical protein complement(127212..127604) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109566 NP_239955.1 CDS yb1688 NC_002528.1 127828 128910 D YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; putative inner membrane protein 127828..128910 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109567 NP_239956.1 CDS aroH NC_002528.1 129262 130308 D Trp-sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 129262..130308 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109568 NP_239957.1 CDS thrS NC_002528.1 130460 132388 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 130460..132388 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109569 NP_239958.1 CDS infC NC_002528.1 132392 132931 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 132392..132931 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109570 NP_239959.1 CDS rpmI NC_002528.1 133018 133215 D 50S ribosomal protein L35 133018..133215 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109571 NP_239960.1 CDS rplT NC_002528.1 133258 133614 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 133258..133614 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109572 NP_239961.1 CDS pheS NC_002528.1 133809 134798 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 133809..134798 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109573 NP_239962.1 CDS pheT NC_002528.1 134808 137195 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 134808..137195 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109574 NP_239963.1 CDS ihfA NC_002528.1 137200 137508 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 137200..137508 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109575 NP_239964.1 CDS queA NC_002528.1 137550 138623 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 137550..138623 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109576 NP_239965.1 CDS tgt NC_002528.1 138664 139776 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 138664..139776 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109577 NP_239966.1 CDS yajC NC_002528.1 139801 140136 D hypothetical protein 139801..140136 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109578 NP_239967.1 CDS glyS NC_002528.1 140188 142260 R glycyl-tRNA synthetase subunit beta complement(140188..142260) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109579 NP_239968.2 CDS glyQ NC_002528.1 142235 143173 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(142235..143173) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109580 NP_239969.1 CDS nfo NC_002528.1 143868 144713 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 143868..144713 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109581 NP_239970.1 CDS rplY NC_002528.1 144748 145035 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 144748..145035 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109582 NP_239971.1 CDS yabI NC_002528.1 145105 145875 R hypothetical protein complement(145105..145875) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109583 NP_239972.1 CDS surA NC_002528.1 146062 147354 D survival protein SurA 146062..147354 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109584 NP_239973.1 CDS ksgA NC_002528.1 147408 148229 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 147408..148229 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109585 NP_239974.1 CDS apaH NC_002528.1 148274 149098 D symmetrical; hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 148274..149098 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109586 NP_239975.1 CDS folA NC_002528.1 149125 149610 R dihydrofolate reductase complement(149125..149610) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109587 NP_239976.1 CDS carB NC_002528.1 149700 152939 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(149700..152939) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109588 NP_239977.1 CDS carA NC_002528.1 152953 154116 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(152953..154116) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109589 NP_239978.1 CDS dapB NC_002528.1 154326 155135 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(154326..155135) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109590 NP_239979.1 CDS ispH NC_002528.1 155139 156098 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(155139..156098) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109591 NP_239980.1 CDS lspA NC_002528.1 156163 156645 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(156163..156645) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109592 NP_239981.1 CDS ileS NC_002528.1 156645 159467 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(156645..159467) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109593 NP_239982.1 CDS ribF NC_002528.1 159484 160425 R riboflavin kinase; FMN adenylyltransferase complement(159484..160425) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109594 NP_239983.1 CDS rpsT NC_002528.1 160640 160909 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 160640..160909 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109595 NP_239984.1 CDS dnaJ NC_002528.1 160960 162093 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(160960..162093) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109596 NP_239985.1 CDS dnaK NC_002528.1 162206 164119 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(162206..164119) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109597 NP_239986.1 CDS nuoA NC_002528.1 164454 164858 D NADH dehydrogenase I subunit A 164454..164858 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109598 NP_239987.1 CDS nuoB NC_002528.1 164892 165566 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 164892..165566 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109599 NP_239988.1 CDS nuoCD NC_002528.1 165657 167459 D NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 165657..167459 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109600 NP_239989.1 CDS nuoE NC_002528.1 167482 167970 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 167482..167970 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109601 NP_239990.1 CDS nuoF NC_002528.1 167967 169301 D NADH dehydrogenase I subunit F 167967..169301 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109602 NP_239991.1 CDS nuoG NC_002528.1 169395 172115 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 169395..172115 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109603 NP_239992.1 CDS nuoH NC_002528.1 172127 173095 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 172127..173095 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109604 NP_239993.1 CDS nuoI NC_002528.1 173120 173662 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 173120..173662 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109605 NP_239994.1 CDS nuoJ NC_002528.1 173672 174184 D NADH dehydrogenase I subunit J 173672..174184 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109606 NP_239995.1 CDS nuoK NC_002528.1 174215 174517 D NADH dehydrogenase I subunit K 174215..174517 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109607 NP_239996.1 CDS nuoL NC_002528.1 174514 176358 D NADH dehydrogenase I subunit L 174514..176358 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109608 NP_239997.1 CDS nuoM NC_002528.1 176455 177972 D NADH dehydrogenase I subunit M 176455..177972 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109609 NP_239998.1 CDS nuoN NC_002528.1 178030 179439 D NADH dehydrogenase I subunit N 178030..179439 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109610 NP_239999.1 CDS folC NC_002528.1 180565 181800 D folylpolyglutamate synthase; dihydrofolate synthase 180565..181800 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109611 NP_240000.2 CDS prsA NC_002528.1 182379 183326 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(182379..183326) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109612 NP_240001.1 CDS ipk NC_002528.1 183446 184330 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(183446..184330) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109613 NP_240002.1 CDS prfA NC_002528.1 184538 185623 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 184538..185623 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109614 NP_240003.1 CDS hemK NC_002528.1 185620 186453 D HemK protein 185620..186453 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109615 NP_240004.1 CDS ychA NC_002528.1 186613 187422 D putative transcriptional regulator 186613..187422 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109616 NP_240005.1 CDS nadE NC_002528.1 187430 188236 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(187430..188236) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109617 NP_240006.1 CDS ackA NC_002528.1 188320 189537 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 188320..189537 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109618 NP_240007.1 CDS pta NC_002528.1 189582 191708 D phosphate acetyltransferase 189582..191708 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109619 NP_240008.1 CDS yfaE NC_002528.1 191740 192003 R hypothetical protein complement(191740..192003) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109620 NP_240009.1 CDS nrdB NC_002528.1 192006 193136 R B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta complement(192006..193136) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109621 NP_240010.1 CDS nrdA NC_002528.1 193204 195489 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(193204..195489) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109622 NP_240011.1 CDS gyrA NC_002528.1 195562 198054 R DNA gyrase subunit A complement(195562..198054) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109623 NP_240012.1 CDS yba2 NC_002528.1 198321 199037 D hypothetical protein 198321..199037 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109624 NP_240013.1 CDS ahpC NC_002528.1 199160 199753 R alkyl hydroperoxide reductase complement(199160..199753) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109625 NP_240014.1 CDS ung NC_002528.1 199831 200493 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 199831..200493 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109626 NP_240015.1 CDS grpE NC_002528.1 200569 201135 R heat shock protein GrpE complement(200569..201135) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109627 NP_240016.1 CDS ppnK NC_002528.1 201252 202130 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 201252..202130 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109628 NP_240017.1 CDS smpA NC_002528.1 202263 202571 D small protein A 202263..202571 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109629 NP_240018.1 CDS ydhD NC_002528.1 203108 203434 D hypothetical protein 203108..203434 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109630 NP_240019.1 CDS rnt NC_002528.1 203578 204243 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(203578..204243) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109631 NP_240020.1 CDS sodA NC_002528.1 204463 205074 D superoxide dismutase 204463..205074 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109632 NP_240021.1 CDS pth NC_002528.1 205262 205795 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 205262..205795 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109633 NP_240022.1 CDS ychF NC_002528.1 205836 206924 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 205836..206924 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109634 NP_240023.1 CDS thrC NC_002528.1 207000 208289 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(207000..208289) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109635 NP_240024.1 CDS thrB NC_002528.1 208296 209225 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(208296..209225) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109636 NP_240025.1 CDS thrA NC_002528.1 209246 211696 R multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I complement(209246..211696) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109637 NP_240026.1 CDS hpt NC_002528.1 212355 212855 D hypoxanthine phosphoribosyltransferase 212355..212855 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109638 NP_240027.1 CDS panC NC_002528.1 212899 213756 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(212899..213756) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109639 NP_240028.1 CDS panB NC_002528.1 213771 214562 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(213771..214562) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109640 NP_240029.1 CDS dksA NC_002528.1 214678 215133 R DnaK suppressor protein complement(214678..215133) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109641 NP_240030.1 CDS truA NC_002528.1 215390 216190 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 215390..216190 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109642 NP_240031.1 CDS mrcB NC_002528.1 216262 218544 D bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; penicillin-binding protein 1b 216262..218544 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109643 NP_240032.1 CDS secA NC_002528.1 218774 221401 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 218774..221401 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109644 NP_240033.1 CDS mutT NC_002528.1 221477 221851 D mutator MutT protein 221477..221851 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109645 NP_240034.1 CDS coaE NC_002528.1 221834 222487 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(221834..222487) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109646 NP_240035.1 CDS guaC NC_002528.1 222543 223592 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 222543..223592 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109647 NP_240036.1 CDS aceE NC_002528.1 223819 226482 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 223819..226482 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109648 NP_240037.2 CDS aceF NC_002528.1 226486 227703 D branched-chain alpha-keto acid dehydrogenase subunit E2 226486..227703 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109649 NP_240038.1 CDS lpdA NC_002528.1 227748 229169 D dihydrolipoamide dehydrogenase 227748..229169 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109650 NP_240039.1 CDS speD NC_002528.1 229342 230139 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(229342..230139) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109651 NP_240040.1 CDS speE NC_002528.1 230158 231018 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(230158..231018) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109652 NP_240041.1 CDS pfs NC_002528.1 231294 231992 R S-adenosylhomocysteine nucleosidase; 5'-methylthioadenosine nucleosidase complement(231294..231992) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109653 NP_240042.1 CDS yadR NC_002528.1 232056 232400 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(232056..232400) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109654 NP_240043.1 CDS ftsZ NC_002528.1 232634 233788 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(232634..233788) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109655 NP_240044.1 CDS ftsA NC_002528.1 233846 235102 R cell division protein FtsA complement(233846..235102) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109656 NP_240045.1 CDS murC NC_002528.1 236217 237671 R UDP-N-acetylmuramate-alanine ligase complement(236217..237671) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109658 NP_240046.1 CDS murG NC_002528.1 237714 238778 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(237714..238778) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109659 NP_240047.1 CDS ftsW NC_002528.1 238775 239974 R cell division protein FtsW complement(238775..239974) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109660 NP_240048.1 CDS murD NC_002528.1 239971 241293 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(239971..241293) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109661 NP_240049.1 CDS mraY NC_002528.1 241293 242366 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(241293..242366) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109662 NP_240050.1 CDS murF NC_002528.1 242360 243727 R UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(242360..243727) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109663 NP_240051.1 CDS murE NC_002528.1 243724 245217 R UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase complement(243724..245217) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109664 NP_240052.1 CDS ftsI NC_002528.1 245218 246957 R cell division protein FtsI complement(245218..246957) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109665 NP_240053.1 CDS ftsL NC_002528.1 247022 247275 R cell division protein complement(join(247022..247093,247093..247275)) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109666 NP_240054.1 CDS mraW NC_002528.1 247278 248216 R S-adenosyl-methyltransferase MraW complement(247278..248216) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109667 NP_240055.1 CDS ilvH NC_002528.1 248338 248814 R acetolactate synthase small subunit complement(248338..248814) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109668 NP_240056.1 CDS ilvI NC_002528.1 248819 250534 R acetolactate synthase large subunit complement(248819..250534) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109669 NP_240057.1 CDS htrA NC_002528.1 252152 253588 D protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 252152..253588 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109671 NP_240058.1 CDS dapD NC_002528.1 253632 254456 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(253632..254456) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109672 NP_240059.1 CDS map NC_002528.1 254517 255311 R methionine aminopeptidase complement(254517..255311) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109673 NP_240060.1 CDS rpsB NC_002528.1 255574 256308 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 255574..256308 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109674 NP_240061.1 CDS tsf NC_002528.1 256385 257191 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 256385..257191 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109675 NP_240062.1 CDS pyrH NC_002528.1 257242 257970 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 257242..257970 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109676 NP_240063.1 CDS frr NC_002528.1 258051 258608 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 258051..258608 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109677 NP_240064.1 CDS dxr NC_002528.1 258691 259887 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 258691..259887 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109678 NP_240065.1 CDS uppS NC_002528.1 259980 260735 D undecaprenyl pyrophosphate synthetase 259980..260735 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109679 NP_240066.1 CDS yaeT NC_002528.1 260969 262822 D hypothetical protein 260969..262822 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109680 NP_240067.1 CDS dnaE NC_002528.1 262859 266344 D DNA polymerase III subunit alpha 262859..266344 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109681 NP_240068.1 CDS proS NC_002528.1 266472 268190 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(266472..268190) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109682 NP_240069.1 CDS flhB NC_002528.1 268530 269681 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 268530..269681 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109683 NP_240070.2 CDS flhA NC_002528.1 269674 271764 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 269674..271764 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109684 NP_240071.1 CDS argS NC_002528.1 271888 273612 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(271888..273612) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109685 NP_240072.1 CDS gloB NC_002528.1 275795 276550 R hydroxyacylglutathione hydrolase complement(275795..276550) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109686 NP_240073.1 CDS dnaQ NC_002528.1 277113 277826 D DNA polymerase III subunit epsilon 277113..277826 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109688 NP_240074.1 CDS gmhA NC_002528.1 278052 278633 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 278052..278633 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109689 NP_240075.2 CDS gpt NC_002528.1 278740 279216 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 278740..279216 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109690 NP_240076.1 CDS grpE1 NC_002528.1 279317 279901 D heat shock protein GrpE 279317..279901 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109691 NP_240077.1 CDS yfjF NC_002528.1 279980 280279 R hypothetical protein complement(279980..280279) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109692 NP_240078.1 CDS smpB NC_002528.1 280373 280861 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 280373..280861 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109693 NP_240079.1 CDS yfhC NC_002528.1 280870 281355 D hypothetical protein 280870..281355 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109694 NP_240080.1 CDS acpS NC_002528.1 281356 281736 R holo-ACP synthase complement(281356..281736) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109695 NP_240081.1 CDS era NC_002528.1 281861 282712 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(281861..282712) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109696 NP_240082.1 CDS rnc NC_002528.1 282709 283389 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(282709..283389) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109697 NP_240083.1 CDS lepB NC_002528.1 283520 284464 R signal peptidase I complement(283520..284464) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109698 NP_240084.1 CDS lepA NC_002528.1 284480 286312 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(284480..286312) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109699 NP_240085.2 CDS mnmA NC_002528.1 286508 287614 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 286508..287614 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109700 NP_240086.1 CDS ycfC NC_002528.1 287650 288285 D HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 287650..288285 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109701 NP_240087.1 CDS purB NC_002528.1 288324 289694 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 288324..289694 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109702 NP_240088.1 CDS mltE NC_002528.1 289718 290383 D membrane-bound lytic murein transglycosylase E 289718..290383 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109703 NP_240089.1 CDS fabI NC_002528.1 290497 291279 D enoyl-ACP reductase 290497..291279 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109704 NP_240090.1 CDS rnb NC_002528.1 291466 293415 D Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 291466..293415 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109705 NP_240091.1 CDS ychE NC_002528.1 293524 294171 D hypothetical protein 293524..294171 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109706 NP_240092.1 CDS lipB NC_002528.1 294209 294844 D lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism; lipoyltransferase 294209..294844 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109707 NP_240093.1 CDS lipA NC_002528.1 294963 295934 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 294963..295934 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109708 NP_240094.1 CDS pyrF NC_002528.1 296039 296749 D orotidine 5'-phosphate decarboxylase 296039..296749 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109709 NP_240095.1 CDS ribA NC_002528.1 296797 297381 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 296797..297381 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109710 NP_240096.1 CDS hns NC_002528.1 297485 297892 R DNA-binding protein H-NS complement(297485..297892) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109711 NP_240097.1 CDS cls NC_002528.1 298238 299698 R catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase complement(298238..299698) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109712 NP_240098.1 CDS yciA NC_002528.1 300079 300486 R hypothetical protein complement(300079..300486) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109713 NP_240099.1 CDS yciB NC_002528.1 300523 301056 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(300523..301056) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109714 NP_240100.1 CDS yciC NC_002528.1 301084 301827 R hypothetical protein complement(301084..301827) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109715 NP_240101.1 CDS trpA NC_002528.1 301932 302741 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(301932..302741) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109716 NP_240102.1 CDS trpB NC_002528.1 302760 303926 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(302760..303926) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109717 NP_240103.1 CDS trpC NC_002528.1 303964 305325 R monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase complement(303964..305325) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109718 NP_240104.1 CDS trpD NC_002528.1 305306 306334 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(305306..306334) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109719 NP_240105.1 CDS yedA NC_002528.1 306569 307492 D hypothetical protein 306569..307492 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109980 NP_240106.1 CDS yciL NC_002528.1 307521 308273 D hypothetical protein 307521..308273 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109981 NP_240107.2 CDS sohB NC_002528.1 308348 309358 D SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 308348..309358 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109982 NP_240108.1 CDS topA NC_002528.1 309445 312030 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 309445..312030 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109983 NP_240109.1 CDS suhB NC_002528.1 312083 312883 R extragenic suppressor protein SuhB complement(312083..312883) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109984 NP_240110.1 CDS yfgB NC_002528.1 313130 314221 D hypothetical protein 313130..314221 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109985 NP_240111.1 CDS ispG NC_002528.1 314272 315378 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 314272..315378 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109986 NP_240112.1 CDS hisS NC_002528.1 315404 316675 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 315404..316675 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109987 NP_240113.1 CDS glyA NC_002528.1 316735 317988 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 316735..317988 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109988 NP_240114.1 CDS bioD NC_002528.1 318076 318750 R dethiobiotin synthetase complement(318076..318750) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109989 NP_240115.1 CDS bioB NC_002528.1 319115 320146 R biotin synthetase complement(319115..320146) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109990 NP_240116.1 CDS bioA NC_002528.1 320225 321511 D adenosylmethionine-8-amino-7-oxononanoate aminotransferase 320225..321511 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109991 NP_240117.1 CDS ybhE NC_002528.1 321520 322524 R catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase complement(321520..322524) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109992 NP_240118.1 CDS mfd NC_002528.1 322648 325086 R transcription-repair coupling factor complement(322648..325086) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109993 NP_240119.1 CDS ycfU NC_002528.1 325561 326760 D hypothetical protein 325561..326760 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109994 NP_240120.1 CDS ycfV NC_002528.1 326753 327439 D ABC transporter ATP-binding protein 326753..327439 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109995 NP_240121.1 CDS gapA NC_002528.1 328764 329774 D glyceraldehyde 3-phosphate dehydrogenase A 328764..329774 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109997 NP_240122.1 CDS fldA NC_002528.1 330105 330620 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(330105..330620) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109998 NP_240123.1 CDS phrB NC_002528.1 330827 332278 D deoxyribodipyrimidine photolyase 330827..332278 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109999 NP_240124.1 CDS ybgI NC_002528.1 332275 333018 D hypothetical protein 332275..333018 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110000 NP_240125.1 CDS sucA NC_002528.1 333143 335872 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 333143..335872 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110001 NP_240126.1 CDS sucB NC_002528.1 335888 337150 D dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase E2 component 335888..337150 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110002 NP_240127.1 CDS gpmA NC_002528.1 337248 337943 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 337248..337943 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110003 NP_240128.1 CDS pfkA NC_002528.1 338127 339089 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 338127..339089 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110004 NP_240129.1 CDS glpF NC_002528.1 339155 339946 D glycerol uptake facilitator protein 339155..339946 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110005 NP_240130.1 CDS tpiA NC_002528.1 339955 340722 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(339955..340722) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110006 NP_240131.1 CDS ihfB NC_002528.1 340821 341105 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(340821..341105) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110007 NP_240132.1 CDS rpsA NC_002528.1 341201 342877 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(341201..342877) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110008 NP_240133.1 CDS aroA NC_002528.1 343716 344999 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(343716..344999) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110010 NP_240134.1 CDS serC NC_002528.1 345066 346151 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(345066..346151) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110011 NP_240135.1 CDS serS NC_002528.1 346190 347473 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(346190..347473) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110012 NP_240136.1 CDS trxB NC_002528.1 347821 348780 D thioredoxin reductase 347821..348780 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110013 NP_240137.1 CDS infA NC_002528.1 348887 349105 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 348887..349105 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110014 NP_240138.1 CDS aspS NC_002528.1 349274 351034 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 349274..351034 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110015 NP_240139.1 CDS znuB NC_002528.1 351045 351833 R high-affinity zinc uptake system membrane protein ZnuB complement(351045..351833) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110016 NP_240140.1 CDS znuC NC_002528.1 351891 352607 R high-affinity zinc uptake system ATP-binding protein ZnuC complement(351891..352607) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110017 NP_240141.1 CDS pykA NC_002528.1 353925 355367 R pyruvate kinase complement(353925..355367) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110018 NP_240142.1 CDS zwf NC_002528.1 355650 357125 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 355650..357125 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110019 NP_240143.1 CDS htpX NC_002528.1 357310 358188 D putative metalloprotease; heat shock protein HtpX 357310..358188 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110020 NP_240144.1 CDS cspC NC_002528.1 358537 358746 D cold shock-like protein CspC 358537..358746 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110021 NP_240145.1 CDS yoaE NC_002528.1 359049 360614 D hypothetical protein 359049..360614 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110022 NP_240146.1 CDS yeaZ NC_002528.1 360644 361309 D hypothetical protein 360644..361309 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110023 NP_240147.1 CDS minE NC_002528.1 361455 361706 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(361455..361706) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110024 NP_240148.1 CDS minD NC_002528.1 361710 362522 R septum site-determining protein MinD complement(361710..362522) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110025 NP_240149.1 CDS minC NC_002528.1 362549 363262 R cell division inhibitor MinC complement(362549..363262) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110026 NP_240150.1 CDS yjjT NC_002528.1 363663 364505 D hypothetical protein 363663..364505 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110027 NP_240151.1 CDS ompA NC_002528.1 365056 366105 R outer membrane protein OmpA complement(365056..366105) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110028 NP_240152.1 CDS mviN NC_002528.1 366242 367777 R virulence factor MviN-like protein complement(366242..367777) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110029 NP_240153.1 CDS pyrC NC_002528.1 368052 369104 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 368052..369104 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110030 NP_240154.1 CDS flgN NC_002528.1 369124 369531 R flagellar synthesis protein FlgN complement(369124..369531) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110031 NP_240155.1 CDS flgA NC_002528.1 369604 370284 R flagella basal-body P-ring formation protein FlgA complement(369604..370284) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110032 NP_240156.1 CDS flgB NC_002528.1 370621 370968 D flagellar basal-body rod protein FlgB 370621..370968 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110033 NP_240157.1 CDS flgC NC_002528.1 370977 371387 D flagellar basal body rod protein FlgC 370977..371387 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110034 NP_240158.1 CDS flgD NC_002528.1 371399 372109 D basal-body rod modification protein FlgD 371399..372109 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110035 NP_240159.2 CDS flgE NC_002528.1 372150 373376 D flagellar hook protein FlgE 372150..373376 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110036 NP_240160.2 CDS flgF NC_002528.1 373403 374161 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 373403..374161 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110037 NP_240161.1 CDS flgG NC_002528.1 374179 374961 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 374179..374961 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110038 NP_240162.1 CDS flgH NC_002528.1 375045 375761 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 375045..375761 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110039 NP_240163.1 CDS flgI NC_002528.1 375942 377099 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA 375942..377099 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110040 NP_240164.1 CDS flgJ NC_002528.1 377099 377398 D flagellar protein FlgJ 377099..377398 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110041 NP_240165.1 CDS flgK NC_002528.1 377500 379131 D flagellar hook-associated protein 1 377500..379131 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110042 NP_240166.1 CDS rne NC_002528.1 379296 382004 R ribonuclease E complement(379296..382004) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110043 NP_240167.1 CDS rluC NC_002528.1 382339 383283 D ribosomal large subunit pseudouridine synthase C 382339..383283 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110044 NP_240168.1 CDS rpmF NC_002528.1 383329 383493 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 383329..383493 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110045 YP_008492944.1 CDS fabD NC_002528.1 383914 384393 D BU350 383914..384393 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110046 NP_240169.1 CDS fabG NC_002528.1 384859 385593 D 3-oxoacyl-ACP reductase 384859..385593 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110047 NP_240170.1 CDS acpP NC_002528.1 385670 385912 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 385670..385912 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110048 NP_240171.1 CDS tmk NC_002528.1 385983 386621 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 385983..386621 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110049 NP_240172.1 CDS holB NC_002528.1 386618 387598 D DNA polymerase III subunit delta' 386618..387598 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110050 NP_240173.1 CDS ycfH NC_002528.1 387632 388426 D hypothetical protein 387632..388426 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110051 NP_240174.2 CDS ptsG NC_002528.1 388523 389956 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunit IIBC 388523..389956 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110052 NP_240175.1 CDS ycfF NC_002528.1 389976 390320 D hypothetical protein 389976..390320 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110053 NP_240176.1 CDS ycfM NC_002528.1 390397 390906 D hypothetical protein 390397..390906 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110054 NP_240177.1 CDS ompF NC_002528.1 391155 392303 R OmpF-like porin complement(391155..392303) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110055 NP_240178.1 CDS asnC NC_002528.1 392443 393843 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(392443..393843) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110056 NP_240179.1 CDS pncB NC_002528.1 393991 395190 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(393991..395190) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110057 NP_240180.1 CDS pyrD NC_002528.1 395612 396475 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 395612..396475 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110058 NP_240181.1 CDS rlmL NC_002528.1 396651 398756 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 396651..398756 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110059 NP_240182.1 CDS uup NC_002528.1 398776 400566 D ABC transporter ATP-binding protein 398776..400566 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110060 NP_240183.1 CDS yceA NC_002528.1 400570 401544 R hypothetical protein complement(400570..401544) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1110061 NP_240184.1 CDS valS NC_002528.1 401601 404468 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(401601..404468) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109720 NP_240185.1 CDS pepA NC_002528.1 404545 406044 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(404545..406044) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109721 NP_240186.1 CDS argF NC_002528.1 406304 407320 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.; ornithine carbamoyltransferase subunit I 406304..407320 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109722 NP_240187.1 CDS pyrB NC_002528.1 407439 408371 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 407439..408371 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109723 NP_240188.1 CDS pyrI NC_002528.1 408379 408843 D involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase 408379..408843 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109724 NP_240189.1 CDS yhaR NC_002528.1 408889 409275 D hypothetical protein 408889..409275 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109725 NP_240190.1 CDS deaD NC_002528.1 409362 411167 R ATP-dependent RNA helicase DeaD complement(409362..411167) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109726 NP_240191.1 CDS pnp NC_002528.1 411548 413671 R polynucleotide phosphorylase complement(411548..413671) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109727 NP_240192.1 CDS rpsO NC_002528.1 413873 414142 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(413873..414142) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109728 NP_240193.1 CDS truB NC_002528.1 414247 415185 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(414247..415185) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109729 NP_240194.1 CDS rbfA NC_002528.1 415223 415585 R ribosome-binding factor A complement(415223..415585) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109730 NP_240195.1 CDS infB NC_002528.1 415631 418225 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(415631..418225) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109731 NP_240196.1 CDS nusA NC_002528.1 418243 419733 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(418243..419733) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109732 NP_240197.1 CDS secG NC_002528.1 420206 420535 R preprotein translocase subunit SecG complement(420206..420535) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109733 NP_240198.1 CDS glmM NC_002528.1 420797 422131 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(420797..422131) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109734 NP_240199.2 CDS hflB NC_002528.1 422351 424186 R cell division protein FtsH complement(422351..424186) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109735 NP_240200.1 CDS ftsJ NC_002528.1 424252 424872 R cell division protein FtsJ complement(424252..424872) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109736 NP_240201.1 CDS greA NC_002528.1 424946 425425 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(424946..425425) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109737 NP_240202.1 CDS yrbA NC_002528.1 425949 426191 D hypothetical protein 425949..426191 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109738 NP_240203.1 CDS murA NC_002528.1 426253 427503 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 426253..427503 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109739 NP_240204.1 CDS rplU NC_002528.1 427642 427968 D 50S ribosomal protein L21 427642..427968 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109740 NP_240205.1 CDS rpmA NC_002528.1 427973 428227 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 427973..428227 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109741 NP_240206.1 CDS obgE NC_002528.1 428379 429383 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 428379..429383 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109742 NP_240207.1 CDS rpsI NC_002528.1 429451 429843 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(429451..429843) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109743 NP_240208.1 CDS rplM NC_002528.1 429864 430292 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(429864..430292) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109744 NP_240209.1 CDS pheA NC_002528.1 430544 431701 D prephenate dehydratase; chorismate mutase 430544..431701 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109745 NP_240210.1 CDS ffh NC_002528.1 431883 433238 D signal recognition particle protein 431883..433238 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109746 NP_240211.1 CDS rpsP NC_002528.1 433347 433586 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 433347..433586 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109747 NP_240212.1 CDS rimM NC_002528.1 433588 434118 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 433588..434118 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109748 NP_240213.1 CDS trmD NC_002528.1 434133 434846 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 434133..434846 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109749 NP_240214.1 CDS rplS NC_002528.1 434945 435292 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 434945..435292 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109750 NP_240215.1 CDS tldD NC_002528.1 435376 436827 R TldD protein complement(435376..436827) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109751 NP_240216.1 CDS aroD NC_002528.1 436985 437437 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 436985..437437 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109752 NP_240217.1 CDS fis NC_002528.1 437630 437926 R factor-for-inversion stimulation protein complement(437630..437926) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109753 NP_240218.1 CDS rluD NC_002528.1 438095 439033 R ribosomal large subunit pseudouridine synthase D complement(438095..439033) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109754 NP_240219.1 CDS yfiO NC_002528.1 439198 439938 D hypothetical protein 439198..439938 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109755 NP_240220.1 CDS alaS NC_002528.1 440103 442739 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 440103..442739 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109756 NP_240221.1 CDS csrA NC_002528.1 442934 443107 D carbon storage regulator 442934..443107 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109757 NP_240222.1 CDS gshA NC_002528.1 443565 445121 D involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 443565..445121 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109758 NP_240223.1 CDS metK NC_002528.1 445268 446404 R methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(445268..446404) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109759 NP_240224.1 CDS endA NC_002528.1 446639 447391 D endonuclease I 446639..447391 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109760 NP_240225.1 CDS yggJ NC_002528.1 447363 448124 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 447363..448124 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109761 NP_240226.1 CDS rpiA NC_002528.1 448198 448869 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(448198..448869) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109762 NP_240227.1 CDS glnS NC_002528.1 449495 451210 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 449495..451210 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109763 NP_240228.1 CDS pyrG NC_002528.1 451384 453021 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 451384..453021 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109764 NP_240229.1 CDS eno NC_002528.1 453051 454355 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 453051..454355 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109765 NP_240230.1 CDS nlpD NC_002528.1 454513 455517 R lipoprotein NlpD complement(454513..455517) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109766 NP_240231.1 CDS ispF NC_002528.1 455608 456093 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(455608..456093) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109767 NP_240232.1 CDS ispD NC_002528.1 456109 456822 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(456109..456822) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109768 NP_240233.1 CDS ygbQ NC_002528.1 456905 457120 R hypothetical protein complement(456905..457120) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109769 NP_240234.1 CDS cysC NC_002528.1 457178 457798 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase complement(457178..457798) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109770 NP_240235.1 CDS cysN NC_002528.1 457799 459220 R sulfate adenylyltransferase complement(457799..459220) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109771 NP_240236.1 CDS cysD NC_002528.1 459239 460147 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(459239..460147) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109772 NP_240237.1 CDS cysG NC_002528.1 460157 461578 R precorrin-2 oxidase; siroheme synthase; ferrochelatase complement(460157..461578) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109773 NP_240238.1 CDS cysH NC_002528.1 461917 462651 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(461917..462651) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109774 NP_240239.1 CDS cysI NC_002528.1 462667 464376 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(462667..464376) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109775 NP_240240.1 CDS cysJ NC_002528.1 464376 466181 R sulfite reductase (NADPH) flavoprotein alpha-component complement(464376..466181) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109776 NP_240241.1 CDS mutS NC_002528.1 466372 468780 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(466372..468780) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109777 NP_240242.1 CDS dsbA NC_002528.1 468937 469575 D thiol:disulfide interchange protein DsbA 468937..469575 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109778 NP_240243.1 CDS polA NC_002528.1 469696 470556 D DNA polymerase I 469696..470556 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109779 NP_240244.1 CDS engB NC_002528.1 470619 471236 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(470619..471236) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109780 NP_240245.1 CDS typA NC_002528.1 471487 473310 D GTP-binding protein TypA; GTP-binding protein BipA 471487..473310 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109781 NP_240246.1 CDS gmk NC_002528.1 473433 474056 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(473433..474056) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109782 NP_240247.1 CDS ygfZ NC_002528.1 474156 475115 R hypothetical protein complement(474156..475115) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109783 NP_240248.1 CDS prfB NC_002528.1 475334 476383 D peptide chain release factor 2 475334..476383 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109784 NP_240249.1 CDS lysS NC_002528.1 476393 477913 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 476393..477913 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109785 NP_240250.1 CDS lysA NC_002528.1 477979 479226 D catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 477979..479226 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109786 NP_240251.1 CDS lgt NC_002528.1 479292 480137 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 479292..480137 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109787 NP_240252.1 CDS thyA NC_002528.1 480151 480945 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 480151..480945 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109788 NP_240253.1 CDS yleA NC_002528.1 481012 482331 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 481012..482331 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109789 NP_240254.1 CDS ybeY NC_002528.1 482486 482821 D hypothetical protein 482486..482821 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109790 NP_240255.1 CDS ybeX NC_002528.1 482902 483777 D hypothetical protein 482902..483777 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109791 NP_240256.1 CDS leuS NC_002528.1 483881 486460 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 483881..486460 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109792 NP_240257.1 CDS holA NC_002528.1 486500 487495 D DNA polymerase III subunit delta 486500..487495 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109793 NP_240258.1 CDS ybeN NC_002528.1 487518 488162 D hypothetical protein 487518..488162 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109794 NP_240259.1 CDS yhhP NC_002528.1 488223 488453 D TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 488223..488453 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109795 NP_240260.1 CDS asd NC_002528.1 488600 489715 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(488600..489715) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109796 NP_240261.2 CDS yhgN NC_002528.1 490011 490601 D YhgN; Ec0197; hydrolyzes nucleoside triphosphates with an O6 atom-containing purine base to nucleoside monophosphate and pyrophosphate; seems to play a role in the elimination of aberrant purine-derived nucleotides containing the 6-keto group; shows preference for deoxyinosine triphosphate and xanthosine triphosphate over standard nucleoside triphosphates (dATP, dCTP, dGTP, and dTTP); putative dITP- and XTP- hydrolase 490011..490601 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109797 NP_240262.1 CDS pgk NC_002528.1 490715 491887 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 490715..491887 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109798 NP_240263.1 CDS fba NC_002528.1 491903 492979 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 491903..492979 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109799 NP_240264.2 CDS yggB NC_002528.1 493115 493960 D hypothetical protein 493115..493960 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109800 NP_240265.1 CDS recC NC_002528.1 494019 497231 D exodeoxyribonuclease V 494019..497231 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109801 NP_240266.1 CDS recB NC_002528.1 497248 500772 D exodeoxyribonuclease V 497248..500772 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109802 NP_240267.1 CDS recD NC_002528.1 500778 502586 D exodeoxyribonuclease V 500778..502586 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109803 NP_240268.1 CDS argA NC_002528.1 502625 503953 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(502625..503953) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109804 NP_240269.1 CDS mltA NC_002528.1 504321 505400 D membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 504321..505400 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109805 NP_240270.1 CDS ribH NC_002528.1 505439 505921 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 505439..505921 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109806 NP_240271.1 CDS thiL NC_002528.1 505951 506922 D thiamin-monophosphate kinase 505951..506922 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109807 NP_240272.1 CDS ribD1 NC_002528.1 506978 507403 D riboflavin deaminase 506978..507403 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109808 NP_240273.1 CDS ribD2 NC_002528.1 507446 508069 D riboflavin reductase 507446..508069 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109809 NP_240274.1 CDS nusB NC_002528.1 508106 508537 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 508106..508537 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109810 NP_240275.1 CDS dxs NC_002528.1 508592 510418 R Dxs protein; catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(508592..510418) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109811 NP_240276.1 CDS ispA NC_002528.1 510476 511324 R geranyltranstransferase complement(510476..511324) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109812 NP_240277.1 CDS yajR NC_002528.1 511376 512548 R hypothetical protein complement(511376..512548) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109813 NP_240278.1 CDS yccK NC_002528.1 512622 512966 D hypothetical protein 512622..512966 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109814 NP_240279.1 CDS cyoE NC_002528.1 512987 513844 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(512987..513844) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109815 NP_240280.1 CDS cyoD NC_002528.1 513872 514189 R cytochrome O ubiquinol oxidase subunit IV complement(513872..514189) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109816 NP_240281.1 CDS cyoC NC_002528.1 514189 514806 R cytochrome O ubiquinol oxidase subunit III complement(514189..514806) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109817 NP_240282.1 CDS cyoB NC_002528.1 514803 516791 R cytochrome O ubiquinol oxidase subunit I complement(514803..516791) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109818 NP_240283.1 CDS cyoA NC_002528.1 516796 517686 R cytochrome O ubiquinol oxidase subunit II complement(516796..517686) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109819 NP_240284.1 CDS bolA NC_002528.1 517985 518299 D BolA protein 517985..518299 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109820 NP_240285.1 CDS tig NC_002528.1 518435 519763 D trigger factor 518435..519763 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109821 NP_240286.1 CDS clpP NC_002528.1 519898 520524 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 519898..520524 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109822 NP_240287.1 CDS clpX NC_002528.1 520623 521912 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 520623..521912 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109823 NP_240288.1 CDS lon NC_002528.1 522104 524437 D ATP-dependent protease LA 522104..524437 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109824 NP_240289.1 CDS ppiD NC_002528.1 524579 526450 D peptidyl-prolyl cis-trans isomerase D 524579..526450 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109825 NP_240290.1 CDS mdl NC_002528.1 527423 529192 D multidrug resistance-like ATP-binding protein Mdl 527423..529192 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109826 NP_240291.1 CDS mdlB NC_002528.1 529164 530936 D multidrug resistance-like ATP-binding protein MdlB 529164..530936 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109827 NP_240292.1 CDS dnaX NC_002528.1 531231 532316 D DNA polymerase III subunits gamma and tau 531231..532316 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109828 NP_240293.1 CDS ybaB NC_002528.1 532636 532965 D hypothetical protein 532636..532965 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109829 NP_240294.1 CDS htpG NC_002528.1 533111 534985 D molecular chaperone; heat shock protein 90 533111..534985 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109830 NP_240295.1 CDS adk NC_002528.1 535058 535705 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 535058..535705 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109831 NP_240296.1 CDS folD NC_002528.1 535936 536793 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 535936..536793 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109832 NP_240297.1 CDS cysS NC_002528.1 536790 538184 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(536790..538184) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109833 NP_240298.1 CDS ybeD NC_002528.1 538445 538708 D hypothetical protein 538445..538708 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109834 NP_240299.1 CDS cspE NC_002528.1 538815 539024 R member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE complement(538815..539024) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109835 NP_240300.1 CDS aroE NC_002528.1 542838 543659 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(542838..543659) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109836 NP_240301.1 CDS yrdC NC_002528.1 543652 544179 R hypothetical protein complement(543652..544179) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109837 NP_240302.1 CDS smg NC_002528.1 544277 544750 R Smg protein complement(544277..544750) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109838 NP_240303.1 CDS def NC_002528.1 544994 545515 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 544994..545515 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109839 NP_240304.1 CDS fmt NC_002528.1 545523 546467 D methionyl-tRNA formyltransferase 545523..546467 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109840 NP_240305.1 CDS rplQ NC_002528.1 546594 546986 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(546594..546986) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109841 NP_240306.1 CDS rpoA NC_002528.1 547031 548020 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(547031..548020) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109842 NP_240307.1 CDS rpsD NC_002528.1 548049 548669 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(548049..548669) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109843 NP_240308.1 CDS rpsK NC_002528.1 548695 549090 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(548695..549090) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109844 NP_240309.1 CDS rpsM NC_002528.1 549108 549464 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(549108..549464) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109845 NP_240310.1 CDS rpmJ NC_002528.1 549558 549674 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(549558..549674) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109846 NP_240311.1 CDS secY NC_002528.1 549700 551013 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(549700..551013) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109847 NP_240312.1 CDS rplO NC_002528.1 551024 551458 R late assembly protein; 50S ribosomal protein L15 complement(551024..551458) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109848 NP_240313.1 CDS rpmD NC_002528.1 551463 551642 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(551463..551642) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109849 NP_240314.1 CDS rpsE NC_002528.1 551652 552155 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(551652..552155) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109850 NP_240315.1 CDS rplR NC_002528.1 552171 552539 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(552171..552539) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109851 NP_240316.3 CDS rplF NC_002528.1 552541 553077 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(552541..553077) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109852 NP_240317.1 CDS rpsH NC_002528.1 553088 553480 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(553088..553480) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109853 NP_240318.1 CDS rpsN NC_002528.1 553509 553814 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(553509..553814) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109854 NP_240319.1 CDS rplE NC_002528.1 553832 554371 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(553832..554371) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109855 NP_240320.1 CDS rplX NC_002528.1 554386 554700 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(554386..554700) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109856 NP_240321.1 CDS rplN NC_002528.1 554726 555094 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(554726..555094) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109857 NP_240322.1 CDS rpsQ NC_002528.1 555209 555460 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(555209..555460) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109858 NP_240323.1 CDS rpmC NC_002528.1 555460 555657 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(555460..555657) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109859 NP_240324.1 CDS rplP NC_002528.1 555657 556067 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(555657..556067) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109860 NP_240325.1 CDS rpsC NC_002528.1 556088 556789 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(556088..556789) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109861 NP_240326.1 CDS rplV NC_002528.1 556808 557140 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(556808..557140) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109862 NP_240327.1 CDS rpsS NC_002528.1 557176 557454 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(557176..557454) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109863 NP_240328.1 CDS rplB NC_002528.1 557474 558295 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(557474..558295) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109864 NP_240329.1 CDS rplW NC_002528.1 558310 558612 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(558310..558612) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109865 NP_240330.1 CDS rplD NC_002528.1 558609 559214 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(558609..559214) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109866 NP_240331.1 CDS rplC NC_002528.1 559232 559861 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(559232..559861) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109867 NP_240332.1 CDS rpsJ NC_002528.1 559892 560203 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(559892..560203) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109868 NP_240333.2 CDS tufB NC_002528.1 560535 561719 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(560535..561719) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109869 NP_240334.1 CDS fusA NC_002528.1 561787 563895 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(561787..563895) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109870 NP_240335.1 CDS rpsG NC_002528.1 564010 564480 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(564010..564480) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109871 NP_240336.1 CDS rpsL NC_002528.1 564522 564896 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(564522..564896) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109872 NP_240337.2 CDS yheL NC_002528.1 565030 565317 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusB complement(565030..565317) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109873 NP_240338.1 CDS yheM NC_002528.1 565329 565688 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC complement(565329..565688) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109874 NP_240339.1 CDS yheN NC_002528.1 565707 566093 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD complement(565707..566093) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109875 NP_240340.1 CDS fkpA NC_002528.1 566176 566901 R FKBP-type peptidylprolyl isomerase complement(566176..566901) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109876 NP_240341.1 CDS argD NC_002528.1 567364 568590 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein complement(567364..568590) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109877 NP_240342.1 CDS yhfC NC_002528.1 568906 570072 D hypothetical protein 568906..570072 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109878 NP_240343.1 CDS trpS NC_002528.1 570134 571141 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(570134..571141) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109879 NP_240344.1 CDS rpe NC_002528.1 571164 571850 R ribulose-phosphate 3-epimerase complement(571164..571850) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109880 NP_240345.1 CDS aroB NC_002528.1 572734 573825 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(572734..573825) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109881 NP_240346.1 CDS aroK NC_002528.1 573843 574364 R type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I complement(573843..574364) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109882 NP_240347.1 CDS deoD NC_002528.1 574967 575671 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(574967..575671) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109883 NP_240348.1 CDS deoB NC_002528.1 575715 576938 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(575715..576938) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109884 NP_240349.1 CDS prfC NC_002528.1 576996 578576 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(576996..578576) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109885 NP_240350.1 CDS yhgI NC_002528.1 579687 580265 R hypothetical protein complement(579687..580265) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109886 NP_240351.1 CDS ssb NC_002528.1 580878 581393 R single-strand binding protein complement(580878..581393) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109887 NP_240352.2 CDS dnaB NC_002528.1 582063 583460 D replicative DNA helicase 582063..583460 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109888 NP_240353.1 CDS gshB NC_002528.1 583707 584669 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 583707..584669 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109889 NP_240354.1 CDS yqgF NC_002528.1 584680 585087 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 584680..585087 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109890 NP_240355.1 CDS yggS NC_002528.1 585205 585807 D hypothetical protein 585205..585807 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109891 NP_240356.1 CDS yggW NC_002528.1 585850 586980 D hypothetical protein 585850..586980 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109892 NP_240357.1 CDS trmB NC_002528.1 586987 587706 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(586987..587706) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109893 NP_240358.1 CDS mutY NC_002528.1 587804 588856 D A/G-specific adenine glycosylase 587804..588856 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109894 NP_240359.1 CDS yggX NC_002528.1 588828 589109 D hypothetical protein 588828..589109 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109895 NP_240360.1 CDS murI NC_002528.1 589203 589991 D glutamate racemase 589203..589991 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109896 NP_240361.1 CDS sbcB NC_002528.1 590182 591423 R Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I complement(590182..591423) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109897 NP_240362.1 CDS yeeX NC_002528.1 591503 591811 D hypothetical protein 591503..591811 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109898 NP_240363.1 CDS pyrE NC_002528.1 592193 592834 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 592193..592834 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109899 NP_240364.1 CDS dut NC_002528.1 592846 593310 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(592846..593310) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109900 NP_240365.1 CDS cysQ NC_002528.1 593354 594151 R CysQ protein complement(593354..594151) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109901 NP_240366.1 CDS rplI NC_002528.1 594138 594590 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(594138..594590) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109902 NP_240367.1 CDS rpsR NC_002528.1 594639 594866 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(594639..594866) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109903 NP_240368.1 CDS rpsF NC_002528.1 594992 595333 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(594992..595333) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109904 NP_240369.1 CDS vacB NC_002528.1 595499 597736 R ribonuclease R; VacB protein complement(595499..597736) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109905 NP_240370.1 CDS purA NC_002528.1 597824 599125 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(597824..599125) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109906 NP_240371.1 CDS hflC NC_002528.1 599175 600107 R with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC complement(599175..600107) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109907 NP_240372.1 CDS hflK NC_002528.1 600110 601330 R HflK protein complement(600110..601330) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109908 NP_240373.1 CDS miaA NC_002528.1 601487 602395 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(601487..602395) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109909 NP_240374.1 CDS mutL NC_002528.1 602433 604187 R DNA mismatch repair protein MutL complement(602433..604187) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109910 NP_240375.1 CDS mtlD NC_002528.1 604287 605444 R mannitol-1-phosphate 5-dehydrogenase complement(604287..605444) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109911 NP_240376.1 CDS mtlA NC_002528.1 605486 607384 R PTS system mannitol-specific transporter subunit IIABC complement(605486..607384) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109912 NP_240377.1 CDS pgi NC_002528.1 607559 609208 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(607559..609208) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109913 NP_240378.1 CDS orn NC_002528.1 609522 610076 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 609522..610076 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109914 NP_240379.1 CDS amiB NC_002528.1 610528 611241 D N-acetylmuramoyl-L-alanine amidase 610528..611241 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109915 NP_240380.1 CDS rpmE NC_002528.1 611349 611567 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(611349..611567) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109916 NP_240381.2 CDS hslV NC_002528.1 612155 612685 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 612155..612685 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109917 NP_240382.1 CDS hslU NC_002528.1 612698 614029 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 612698..614029 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109918 NP_240383.1 CDS ibpA NC_002528.1 614236 614709 D 16 kDa heat shock protein A 614236..614709 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109919 NP_240384.1 CDS fpr NC_002528.1 614786 615544 D ferredoxin-NADP reductase 614786..615544 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109920 NP_240385.1 CDS yjeA NC_002528.1 615562 616536 R lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase complement(615562..616536) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109921 NP_240386.1 CDS coaD NC_002528.1 616608 617105 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 616608..617105 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109922 NP_240387.1 CDS yba3 NC_002528.1 617192 618295 R hypothetical protein complement(617192..618295) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109923 NP_240388.1 CDS yba4 NC_002528.1 618288 618626 R hypothetical protein complement(618288..618626) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109924 NP_240389.1 CDS yhiQ NC_002528.1 618781 619521 D hypothetical protein 618781..619521 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109925 NP_240390.1 CDS pitA NC_002528.1 619604 621076 R low-affinity inorganic phosphate transporter complement(619604..621076) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109926 NP_240391.1 CDS ynfM NC_002528.1 621227 622459 R hypothetical protein complement(621227..622459) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109927 NP_240392.2 CDS dapF NC_002528.1 622493 623347 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(622493..623347) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109928 NP_240393.1 CDS cyaY NC_002528.1 623535 623885 D CyaY protein 623535..623885 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109929 NP_240394.1 CDS hemC NC_002528.1 624014 624958 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 624014..624958 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109930 NP_240395.1 CDS rho NC_002528.1 626196 627455 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(626196..627455) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109932 NP_240396.1 CDS trxA NC_002528.1 627585 627911 R thioredoxin complement(627585..627911) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109933 NP_240397.1 CDS rep NC_002528.1 628113 630050 R ATP-dependent DNA helicase Rep complement(628113..630050) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109934 NP_240398.1 CDS ilvC NC_002528.1 630120 631592 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(630120..631592) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109935 NP_240399.1 CDS ilvD NC_002528.1 631640 633493 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(631640..633493) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109936 NP_240400.1 CDS yfhO NC_002528.1 633980 635194 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 633980..635194 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109937 NP_240401.1 CDS iscU NC_002528.1 635225 635608 D scaffold protein 635225..635608 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109938 NP_240402.1 CDS hscB NC_002528.1 635703 636227 D chaperone protein HscB 635703..636227 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109939 NP_240403.1 CDS hscA NC_002528.1 636239 638074 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 636239..638074 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109940 NP_240404.1 CDS fdx NC_002528.1 638074 638409 D (2Fe-2S) ferredoxin 638074..638409 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109941 NP_240405.1 CDS engA NC_002528.1 638406 639767 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(638406..639767) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109942 NP_240406.1 CDS yfgM NC_002528.1 639860 640441 R hypothetical protein complement(639860..640441) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109943 BU609 tRNA BU609 NC_002528.1 18028 18100 R tRNA-Phe complement(18028..18100) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109948 BU610 tRNA BU610 NC_002528.1 48488 48560 R tRNA-Thr complement(48488..48560) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109949 BU611 tRNA BU611 NC_002528.1 48576 48647 R tRNA-Gly complement(48576..48647) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109950 BU612 tRNA BU612 NC_002528.1 48670 48754 R tRNA-Tyr complement(48670..48754) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109951 BU613 tRNA BU613 NC_002528.1 48770 48842 R tRNA-Thr complement(48770..48842) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109952 BU614 tRNA BU614 NC_002528.1 74471 74543 R tRNA-Lys complement(74471..74543) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109953 BU615 tRNA BU615 NC_002528.1 74572 74644 R tRNA-Val complement(74572..74644) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109954 BU616 tRNA BU616 NC_002528.1 76347 76422 D tRNA-Ala 76347..76422 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109955 BU617 tRNA BU617 NC_002528.1 117007 117080 R tRNA-Val complement(117007..117080) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109956 BU618 tRNA BU618 NC_002528.1 275637 275713 D tRNA-Ile 275637..275713 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109957 BU619 tRNA BU619 NC_002528.1 275728 275800 D tRNA-Ala 275728..275800 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109958 BU620 tRNA BU620 NC_002528.1 277895 277968 D tRNA-Asp 277895..277968 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109959 BU621 tRNA BU621 NC_002528.1 364524 364607 R tRNA-Leu complement(364524..364607) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109960 BU622 tRNA BU622 NC_002528.1 364619 364692 R tRNA-Cys complement(364619..364692) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109961 BU623 tRNA BU623 NC_002528.1 364863 364947 D tRNA-Ser 364863..364947 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109962 BU624 tRNA BU624 NC_002528.1 420072 420157 R tRNA-Leu complement(420072..420157) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109963 BU625 tRNA BU625 NC_002528.1 443263 443354 D tRNA-Ser 443263..443354 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109964 BU626 tRNA BU626 NC_002528.1 443372 443445 D tRNA-Arg 443372..443445 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109965 BU627 tRNA BU627 NC_002528.1 449053 449127 R tRNA-Gln complement(449053..449127) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109966 BU628 tRNA BU628 NC_002528.1 449220 449301 R tRNA-Leu complement(449220..449301) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109967 BU629 tRNA BU629 NC_002528.1 449313 449389 R tRNA-Met complement(449313..449389) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109968 BU630 tRNA BU630 NC_002528.1 504133 504209 R tRNA-Met complement(504133..504209) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109969 BU631 tRNA BU631 NC_002528.1 535708 535781 R tRNA-Arg complement(535708..535781) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109970 BU632 tRNA BU632 NC_002528.1 542613 542685 R tRNA-Glu complement(542613..542685) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109971 BU633 tRNA BU633 NC_002528.1 574863 574947 D tRNA-Ser 574863..574947 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109972 BU634 tRNA BU634 NC_002528.1 591818 591890 R tRNA-Asn complement(591818..591890) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109973 BU635 tRNA BU635 NC_002528.1 592025 592097 D tRNA-Met 592025..592097 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109974 BU636 tRNA BU636 NC_002528.1 610162 610237 D tRNA-Gly 610162..610237 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109975 BU637 tRNA BU637 NC_002528.1 625716 625792 R tRNA-Pro complement(625716..625792) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109976 BU638 tRNA BU638 NC_002528.1 625829 625904 R tRNA-His complement(625829..625904) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109977 BU639 tRNA BU639 NC_002528.1 625934 626007 R tRNA-Arg complement(625934..626007) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109978 BU640 tRNA BU640 NC_002528.1 633734 633807 R tRNA-Trp complement(633734..633807) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109979 BU243 rRNA rrs NC_002528.1 274044 275583 D 16S ribosomal RNA 274044..275583 Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109945 BU490 rRNA rrf NC_002528.1 539312 539426 R 5S ribosomal RNA complement(539312..539426) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109946 BU491 rRNA rrl NC_002528.1 539539 542451 R 23S ribosomal RNA complement(539539..542451) Buchnera aphidicola str. APS (Acyrthosiphon pisum) 1109947