-- dump date 20140619_013644 -- class Genbank::CDS -- table cds_note -- id note YP_101862.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_101863.1 binds the polymerase to DNA and acts as a sliding clamp YP_101864.1 negatively supercoils closed circular double-stranded DNA YP_101865.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_101866.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_101867.1 This gene is disrupted by an IS407 element.identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_101869.1 identified by match to protein family HMM PF01839; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_101873.1 identified by match to protein family HMM PF00498 YP_101874.1 This gene assignment is based on a local HMM match. YP_101876.1 identified by similarity to GP:4218544; match to protein family HMM PF02624; match to protein family HMM TIGR00702 YP_101877.1 identified by match to protein family HMM PF00596 YP_101879.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_101880.1 identified by match to protein family HMM PF01943 YP_101881.1 identified by match to protein family HMM PF00534 YP_101882.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479 YP_101885.1 identified by similarity to GP:4512014; match to protein family HMM PF00534 YP_101886.1 identified by match to protein family HMM PF01569 YP_101888.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_101889.1 identified by similarity to GP:14718751; match to protein family HMM PF00703 YP_101890.1 identified by similarity to OMNI:NTL01AT2472 YP_101891.1 identified by match to protein family HMM PF02771 YP_101892.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides YP_101893.1 identified by similarity to OMNI:NTL01SS01711 YP_101894.1 identified by similarity to OMNI:NTL01SS01711 YP_101895.1 identified by similarity to SP:Q48460; match to protein family HMM PF02397 YP_101896.1 identified by similarity to SP:P75881; match to protein family HMM PF02563 YP_101897.1 identified by similarity to GP:6137218; match to protein family HMM PF00534 YP_101900.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_101901.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_101902.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_101904.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_101905.1 identified by similarity to GP:17427335 YP_101906.1 identified by similarity to SP:P54692; match to protein family HMM PF01063 YP_101907.1 identified by match to protein family HMM PF00768 YP_101909.1 identified by similarity to GP:17427337 YP_101910.1 identified by similarity to PIR:JC7085 YP_101911.1 identified by similarity to OMNI:NTL01RS0317 YP_101912.1 identified by similarity to GP:17427325 YP_101913.1 identified by match to protein family HMM PF02470 YP_101914.1 identified by match to protein family HMM PF00005 YP_101915.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_101916.1 identified by similarity to SP:P08331; match to protein family HMM PF00149; match to protein family HMM PF02872 YP_101917.1 identified by similarity to OMNI:NTL01RS3360 YP_101918.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_101919.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_101920.1 identified by similarity to OMNI:NTL01RS0310 YP_101921.1 identified by similarity to SP:P76658; match to protein family HMM PF01467; match to protein family HMM TIGR00125 YP_101922.1 identified by similarity to GP:3769514 YP_101923.1 identified by similarity to GP:17427314 YP_101924.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_101925.1 identified by match to protein family HMM PF01557 YP_101926.1 identified by match to protein family HMM PF01614 YP_101927.1 identified by similarity to GP:17427308 YP_101928.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_101929.1 identified by similarity to GP:17427297 YP_101930.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_101931.1 identified by similarity to SP:P29131; match to protein family HMM PF05036 YP_101932.1 identified by similarity to SP:Q9RHV8; match to protein family HMM PF01323 YP_101933.1 identified by match to protein family HMM PF00106 YP_101934.1 identified by similarity to SP:P19992; match to protein family HMM PF00106 YP_101935.1 identified by match to protein family HMM PF01047 YP_101937.1 identified by match to protein family HMM PF00496 YP_101938.1 identified by match to protein family HMM PF00005 YP_101939.1 identified by match to protein family HMM PF00753 YP_101940.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol YP_101941.1 identified by similarity to GP:7245350; match to protein family HMM PF00484 YP_101942.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_101943.1 identified by match to protein family HMM PF00106 YP_101944.1 identified by similarity to GP:17427279 YP_101945.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_101946.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_101947.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_101948.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00433 YP_101949.1 identified by match to protein family HMM PF03932 YP_101950.1 identified by similarity to OMNI:NTL01RS0099 YP_101951.1 identified by match to protein family HMM PF00245 YP_101952.1 identified by similarity to GB:AAM37047.1 YP_101953.1 identified by similarity to OMNI:NT01MC2874 YP_101954.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_101955.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_101956.1 This gene is disrupted by an IS407 element. The C-terminal codons of this gene are contributed by the left inverted repeat of IS407.identified by Glimmer2 YP_101957.1 identified by similarity to OMNI:NTL01RS0785 YP_101958.1 identified by match to protein family HMM PF00903 YP_101959.1 identified by similarity to SP:P06134; match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589 YP_101960.1 identified by similarity to SP:P04395; match to protein family HMM PF00730 YP_101961.1 involved in the first step of glutathione biosynthesis YP_101962.1 identified by similarity to SP:P00579; match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545 YP_101964.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_101965.1 identified by match to protein family HMM PF01547 YP_101966.1 identified by match to protein family HMM PF00850 YP_101967.1 identified by match to protein family HMM PF00795 YP_101970.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540 YP_101971.1 identified by similarity to GP:17429911 YP_101972.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_101973.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_101974.1 identified by similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_101975.1 identified by similarity to OMNI:NTL01BM0303; match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_101976.1 identified by match to protein family HMM PF01734 YP_101977.1 identified by similarity to GP:13516509; match to protein family HMM PF00389; match to protein family HMM PF02826 YP_101978.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_101979.1 decatenates replicating daughter chromosomes YP_101980.1 identified by similarity to GP:17427075 YP_101981.1 identified by similarity to SP:P43862; match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_101982.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_101983.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_101984.1 identified by match to protein family HMM PF01810 YP_101985.1 identified by match to protein family HMM PF01435 YP_101986.1 identified by match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_101987.1 identified by similarity to GP:17427084 YP_101988.1 identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_101989.1 identified by match to protein family HMM PF00072; match to protein family HMM TIGR01199 YP_101991.1 identified by match to protein family HMM TIGR00364 YP_101992.1 identified by similarity to GP:17428464 YP_101993.1 identified by match to protein family HMM PF01242 YP_101995.1 identified by similarity to SP:P23522; match to protein family HMM PF03328 YP_101996.1 identified by similarity to OMNI:NTL01RS0024 YP_101997.1 identified by similarity to SP:P15035; match to protein family HMM PF01098 YP_101998.1 identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_101999.1 identified by similarity to SP:P16927; match to protein family HMM PF04093 YP_102000.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_102001.1 functions in MreBCD complex in some organisms YP_102002.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_102003.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_102004.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_102005.1 identified by similarity to OMNI:NTL01RS0138; match to protein family HMM PF03976 YP_102006.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_102007.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_102009.1 identified by similarity to OMNI:NTL01BM1919 YP_102010.1 identified by similarity to SP:P18773 YP_102011.1 identified by similarity to OMNI:NTL01XA0112 YP_102012.1 identified by match to protein family HMM PF00083 YP_102013.1 identified by match to protein family HMM PF01047 YP_102014.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_102015.1 identified by similarity to GP:5924061 YP_102016.1 identified by similarity to SP:P46118; match to protein family HMM PF01380 YP_102017.1 identified by similarity to SP:P94212; match to protein family HMM PF01979 YP_102018.1 identified by similarity to SP:P37552; match to protein family HMM PF01042 YP_102019.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_102020.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_102022.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913 YP_102023.1 identified by similarity to GP:17427465; match to protein family HMM PF01230 YP_102024.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_102025.1 identified by similarity to OMNI:NTL01RS0459 YP_102026.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions YP_102027.1 identified by similarity to SP:O86262; match to protein family HMM PF05724 YP_102028.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_102029.1 converts dATP to dAMP and pyrophosphate YP_102030.1 identified by similarity to SP:P75771; match to protein family HMM PF00614 YP_102031.1 identified by match to protein family HMM PF00440 YP_102032.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_102033.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_102034.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_102035.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_102036.1 identified by similarity to SP:P32177; match to protein family HMM PF02634; match to protein family HMM TIGR00129 YP_102037.1 identified by similarity to GB:BAC08908.1 YP_102038.1 identified by match to protein family HMM PF03061 YP_102039.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_102041.1 identified by match to protein family HMM PF00483 YP_102042.1 identified by similarity to GP:17427524 YP_102043.1 identified by similarity to SP:P31554 YP_102044.1 identified by similarity to SP:P21202; match to protein family HMM PF00639 YP_102045.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_102046.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_102047.1 identified by similarity to SP:Q59384; match to protein family HMM PF00903; match to protein family HMM TIGR00068 YP_102049.1 identified by similarity to GP:17427531; match to protein family HMM PF01863 YP_102050.1 identified by match to protein family HMM PF01553 YP_102051.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_102052.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_102053.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_102054.1 Transfers the fatty acyl group on membrane lipoproteins YP_102055.1 identified by similarity to SP:Q9R874; match to protein family HMM PF00571; match to protein family HMM PF03471 YP_102056.1 identified by match to protein family HMM PF04752 YP_102057.1 contains unknown N-terminal domain/metalloprotease C-terminal domain YP_102059.1 identified by match to protein family HMM PF02562 YP_102060.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_102061.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102062.1 identified by match to protein family HMM PF00083 YP_102063.1 identified by match to protein family HMM PF01381 YP_102064.1 identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506 YP_102065.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_102066.1 identified by similarity to OMNI:DR2437; match to protein family HMM PF00892 YP_102067.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_102068.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_102069.1 identified by match to protein family HMM PF01042 YP_102071.1 identified by similarity to SP:P18156; match to protein family HMM PF00230 YP_102072.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_102073.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_102075.1 identified by similarity to SP:P09392; match to protein family HMM PF00455 YP_102076.1 identified by match to protein family HMM PF01019 YP_102077.1 identified by similarity to GP:17430159 YP_102079.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_102080.1 identified by similarity to SP:Q03318; match to protein family HMM PF00034 YP_102081.1 identified by similarity to SP:P43302; match to protein family HMM PF00034 YP_102083.1 identified by match to protein family HMM PF05425 YP_102085.1 identified by similarity to SP:P31458; match to protein family HMM PF01188; match to protein family HMM PF02746 YP_102087.1 identified by similarity to GP:17430328; match to protein family HMM PF04828 YP_102088.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409 YP_102089.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF03707 YP_102090.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966 YP_102092.1 identified by similarity to SP:P50466; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM TIGR00229 YP_102093.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102094.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102095.1 identified by match to protein family HMM PF00083 YP_102096.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_102097.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_102098.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_102099.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_102100.1 identified by similarity to GP:17427563 YP_102101.1 catalyzes the interconversion of succinyl-CoA and succinate YP_102102.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_102103.1 identified by similarity to GP:9947094; match to protein family HMM PF03741 YP_102104.1 identified by similarity to GP:18535594; match to protein family HMM PF00114 YP_102105.1 identified by match to protein family HMM PF04932 YP_102107.1 identified by similarity to GP:15978503 YP_102108.1 identified by match to protein family HMM TIGR01352 YP_102109.1 This gene has been interrupted by IS407A-5. YP_102110.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102111.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102112.1 identified by similarity to OMNI:NTL01RS0561; match to protein family HMM PF01435 YP_102113.1 identified by similarity to GP:17427573 YP_102115.1 identified by similarity to GP:17427575 YP_102116.1 identified by similarity to SP:P37692; match to protein family HMM PF01075 YP_102117.1 identified by similarity to GP:17427577 YP_102118.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_102119.1 identified by match to protein family HMM PF03591 YP_102120.1 identified by similarity to GP:17427580 YP_102121.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_102123.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_102124.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_102125.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_102126.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_102127.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_102128.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_102129.1 identified by similarity to GP:17427591 YP_102131.1 identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666 YP_102132.1 identified by similarity to SP:P22104; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_102133.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_102134.1 identified by similarity to SP:P09376; match to protein family HMM PF00089; match to protein family HMM PF00595 YP_102135.1 identified by similarity to GP:17428329 YP_102136.1 identified by match to protein family HMM PF00440 YP_102137.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_102138.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_102139.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_102141.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102142.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102143.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_102144.1 identified by similarity to SP:P45382; match to protein family HMM PF00107 YP_102145.1 identified by match to protein family HMM PF00756 YP_102146.1 identified by match to protein family HMM PF00950 YP_102147.1 identified by match to protein family HMM PF00005 YP_102148.1 identified by similarity to SP:Q9L5X0; match to protein family HMM PF01297 YP_102150.1 Converts D-sorbitol to L-sorbose YP_102151.1 identified by similarity to SP:P26420; match to protein family HMM PF00294 YP_102152.1 identified by similarity to GP:2293414; match to protein family HMM PF01547 YP_102153.1 identified by similarity to GP:2293415; match to protein family HMM PF00528 YP_102154.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_102155.1 identified by similarity to SP:P19566; match to protein family HMM PF00005; match to protein family HMM PF03459 YP_102156.1 identified by similarity to GP:18143909; match to protein family HMM TIGR01409 YP_102157.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102158.1 identified by similarity to GP:7327686; match to protein family HMM PF00144 YP_102159.1 identified by match to protein family HMM PF00083 YP_102160.1 identified by similarity to OMNI:BRA0867; match to protein family HMM PF04198 YP_102161.1 identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_102162.1 identified by similarity to SP:P33029; match to protein family HMM PF01232 YP_102163.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102164.2 catalyzes the formation of benzaldehyde from benzoylformate YP_102165.1 identified by match to protein family HMM PF00171 YP_102166.1 identified by match to protein family HMM PF02558; match to protein family HMM TIGR00745 YP_102168.1 identified by similarity to SP:Q51955; match to protein family HMM PF00083 YP_102169.1 identified by match to protein family HMM PF03301 YP_102170.1 identified by match to protein family HMM TIGR01814 YP_102171.1 identified by match to protein family HMM PF04199 YP_102172.1 identified by match to protein family HMM PF01037 YP_102173.1 identified by match to protein family HMM PF01613 YP_102174.1 identified by similarity to SP:Q8Y1C6; match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_102175.1 identified by similarity to GP:17427776; match to protein family HMM PF01904 YP_102176.1 identified by match to protein family HMM PF02353 YP_102177.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_102178.1 identified by match to protein family HMM PF00899 YP_102179.1 identified by similarity to GP:17427386; match to protein family HMM PF02678; match to protein family HMM PF05726 YP_102180.1 identified by similarity to GP:17430284; match to protein family HMM PF00892 YP_102182.1 identified by match to protein family HMM PF01520 YP_102183.1 identified by similarity to GP:17429561; match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_102184.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276 YP_102185.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_102186.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_102187.1 identified by match to protein family HMM PF00501 YP_102188.1 identified by similarity to SP:P36922; match to protein family HMM PF04073 YP_102189.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_102190.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_102191.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_102192.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_102193.1 identified by similarity to GP:17429576 YP_102194.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_102195.1 identified by similarity to SP:P75932; match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_102196.1 identified by similarity to GP:14488714; match to protein family HMM PF00106 YP_102197.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_102198.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_102199.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_102201.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_102202.1 identified by similarity to SP:P11045; match to protein family HMM PF00186 YP_102203.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_102204.1 identified by similarity to SP:P24231; match to protein family HMM PF01523 YP_102205.1 identified by similarity to GP:17427956; match to protein family HMM PF04751 YP_102206.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis YP_102207.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_102208.1 identified by match to protein family HMM PF01435 YP_102209.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_102210.1 identified by similarity to GP:17427951 YP_102211.1 catalyzes the formation of adenosylcobinamide-phosphate from adenosylcobyric acid YP_102212.1 identified by match to protein family HMM PF00293 YP_102214.1 identified by match to protein family HMM PF00583 YP_102215.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_102216.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_102217.1 Essential for efficient processing of 16S rRNA YP_102218.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_102219.1 identified by similarity to GP:17427941 YP_102220.1 identified by match to protein family HMM PF04055 YP_102221.1 identified by similarity to SP:P19494; match to protein family HMM PF01037 YP_102222.1 catalyzes the oxidative deamination of D-amino acids YP_102223.1 identified by similarity to SP:P38974; match to protein family HMM PF00766 YP_102224.1 identified by similarity to SP:P38975; match to protein family HMM PF01012 YP_102225.1 identified by similarity to SP:P28635; match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_102226.1 identified by similarity to SP:P31547; match to protein family HMM PF00528 YP_102227.1 part of the metNIQ transport system for methionine YP_102228.1 identified by match to protein family HMM PF00561 YP_102229.1 identified by match to protein family HMM PF00850 YP_102230.1 identified by similarity to SP:P41052 YP_102231.2 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_102233.1 identified by similarity to GP:10505056 YP_102234.1 identified by similarity to SP:P17963 YP_102235.1 identified by similarity to SP:P76658; match to protein family HMM PF00294 YP_102236.1 identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721 YP_102237.1 identified by similarity to OMNI:NTL01RS0912; match to protein family HMM PF00515 YP_102238.1 identified by similarity to GP:17427923 YP_102239.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_102240.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_102241.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_102242.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_102243.1 fusion of tyrA/aroA YP_102245.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807 YP_102246.2 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_102247.1 identified by similarity to GP:17427914 YP_102248.1 negatively supercoils closed circular double-stranded DNA YP_102249.1 identified by similarity to SP:Q05146; match to protein family HMM PF00691 YP_102250.1 Involved in ubiquinone biosynthesis YP_102251.1 identified by similarity to SP:P32662; match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_102252.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102253.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102254.1 identified by similarity to OMNI:NTL02ML4158 YP_102257.1 identified by similarity to GP:3724143 YP_102258.1 identified by similarity to GP:3724144; match to protein family HMM PF01512 YP_102259.1 identified by similarity to SP:P07658; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_102260.1 identified by similarity to OMNI:NTL02ML4174 YP_102261.1 identified by similarity to SP:P42535; match to protein family HMM PF01360; match to protein family HMM PF01494 YP_102262.1 identified by match to protein family HMM PF00515 YP_102263.1 identified by similarity to SP:P07661; match to protein family HMM PF00083 YP_102264.1 identified by match to protein family HMM PF00117 YP_102266.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_102267.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein YP_102269.1 identified by similarity to GP:4741723; match to protein family HMM PF02625 YP_102270.1 catalyzes the formation of inosine from adenosine YP_102271.1 identified by match to protein family HMM PF00860 YP_102272.1 Catalyzes the deamination of guanine YP_102273.1 identified by similarity to GP:17429119; match to protein family HMM PF01169 YP_102274.1 identified by similarity to GP:17429143 YP_102275.1 identified by similarity to SP:P04825; match to protein family HMM PF01433 YP_102276.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_102277.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102278.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_102279.1 identified by similarity to GP:9930476; similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_102281.1 identified by similarity to GP:17431741 YP_102282.1 identified by match to protein family HMM PF00593 YP_102284.1 catalyzes the interconversion of chorismate to prephenate YP_102286.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102287.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102288.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093 YP_102289.1 Converts isocitrate to alpha ketoglutarate YP_102290.1 identified by match to protein family HMM PF00394 YP_102291.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_102292.1 identified by match to protein family HMM PF01022 YP_102294.1 identified by match to protein family HMM PF03061 YP_102295.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_102297.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102298.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102300.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102301.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102302.1 identified by similarity to SP:P37340; match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_102303.1 identified by similarity to GP:17427801 YP_102306.1 identified by similarity to SP:P00214; match to protein family HMM PF00037 YP_102307.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_102308.1 identified by similarity to GP:17428045; match to protein family HMM PF02589 YP_102309.1 identified by similarity to OMNI:NTL01RS1033 YP_102310.2 Involved in the metabolism of aromatic amino acids YP_102311.1 identified by match to protein family HMM PF02646 YP_102312.1 identified by match to protein family HMM PF00583 YP_102313.1 identified by similarity to GP:17428049 YP_102314.1 identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_102315.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_102316.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_102317.1 identified by similarity to SP:P21513; match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_102318.1 identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_102319.1 identified by match to protein family HMM PF00355 YP_102320.1 identified by match to protein family HMM PF01343 YP_102321.1 identified by match to protein family HMM PF00590 YP_102322.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_102323.1 identified by similarity to GP:17428060; match to protein family HMM PF02620 YP_102324.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_102325.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_102326.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_102327.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_102328.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_102329.1 carries the fatty acid chain in fatty acid biosynthesis YP_102330.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_102332.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_102333.1 identified by similarity to GP:12661185; match to protein family HMM PF03872 YP_102334.1 identified by similarity to SP:P38108 YP_102335.1 identified by similarity to GP:1345104; match to protein family HMM PF00089; match to protein family HMM PF00595 YP_102336.1 identified by similarity to OMNI:NTL01NM00903 YP_102337.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_102338.1 identified by similarity to SP:P26844; match to protein family HMM PF00461 YP_102339.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_102340.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_102341.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_102342.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_102343.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_102344.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_102345.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_102346.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_102348.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_102349.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_102351.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102352.1 identified by similarity to SP:Q9I163; match to protein family HMM PF02678; match to protein family HMM PF05726 YP_102353.1 identified by match to protein family HMM PF00583 YP_102355.1 identified by similarity to OMNI:DR1885; match to protein family HMM PF04314 YP_102356.1 identified by match to protein family HMM PF02630 YP_102357.1 identified by similarity to SP:P31678; match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484 YP_102358.1 identified by similarity to SP:P31677; match to protein family HMM PF00982 YP_102359.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_102360.1 identified by match to protein family HMM PF00534 YP_102362.1 identified by similarity to GB:CAE20630.1 YP_102363.1 identified by match to protein family HMM PF01266 YP_102364.1 identified by match to protein family HMM PF01094 YP_102365.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102366.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102368.1 identified by match to protein family HMM PF04794 YP_102369.1 identified by match to protein family HMM PF04055 YP_102370.1 identified by match to protein family HMM PF00535 YP_102371.1 identified by match to protein family HMM PF00296 YP_102372.1 identified by match to protein family HMM PF00561 YP_102373.1 identified by similarity to SP:P77150; match to protein family HMM TIGR00687 YP_102375.1 identified by similarity to SP:P15713; match to protein family HMM PF04185; match to protein family HMM PF05506; match to protein family HMM TIGR01409 YP_102376.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102377.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102378.1 identified by similarity to GP:9946790; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_102379.1 identified by similarity to SP:O30506; match to protein family HMM PF00005 YP_102380.1 identified by match to protein family HMM PF00165 YP_102381.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate YP_102382.1 identified by similarity to SP:P76218 YP_102383.1 identified by similarity to SP:P76218 YP_102384.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH YP_102385.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_102386.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism YP_102387.1 identified by similarity to SP:P39100; match to protein family HMM PF00043 YP_102388.1 identified by match to protein family HMM PF00497 YP_102389.1 identified by match to protein family HMM PF00487 YP_102390.1 identified by similarity to SP:P18403; match to protein family HMM PF03626 YP_102391.1 identified by similarity to SP:P18400; match to protein family HMM TIGR01433 YP_102393.1 identified by similarity to GP:17427789 YP_102394.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_102395.1 identified by similarity to GP:9107113; match to protein family HMM PF01883 YP_102396.1 identified by match to protein family HMM PF01592 YP_102397.1 This protein may act as both cysteine desulfurase and selenocysteine lyase.identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979 YP_102398.1 identified by similarity to SP:P77689; match to protein family HMM PF01458 YP_102399.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_102400.1 identified by similarity to GP:17430423 YP_102402.1 identified by similarity to SP:P02941; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_102403.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_102404.1 identified by similarity to OMNI:NTL03PA00528; match to protein family HMM PF00027 YP_102407.1 identified by similarity to GP:17427122; match to protein family HMM PF03060 YP_102408.1 identified by similarity to GP:3769580; match to protein family HMM PF01136 YP_102409.1 identified by similarity to GP:17431442; match to protein family HMM PF01136 YP_102410.1 identified by similarity to OMNI:NTL03PA01919; match to protein family HMM PF04055 YP_102411.1 identified by similarity to GB:AAP85991.1 YP_102412.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_102413.1 identified by similarity to GP:17430423; match to protein family HMM PF05940 YP_102414.1 identified by similarity to OMNI:NTL01TV1401; match to protein family HMM PF01883 YP_102415.1 identified by similarity to GP:2584874 YP_102417.1 identified by similarity to SP:P12691; match to protein family HMM PF00487 YP_102418.1 identified by similarity to SP:P00914; match to protein family HMM PF00875; match to protein family HMM PF03441 YP_102419.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_102421.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_102422.1 identified by similarity to GP:17431266 YP_102423.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_102424.1 identified by similarity to SP:P12380; match to protein family HMM PF00392 YP_102425.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_102426.1 identified by similarity to GP:13195271 YP_102427.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_102428.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_102430.1 identified by similarity to GP:2642341; match to protein family HMM PF05013; match to protein family HMM TIGR02017 YP_102432.1 identified by match to protein family HMM PF00117 YP_102433.1 identified by similarity to SP:P78061; match to protein family HMM PF00120 YP_102434.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102435.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102437.1 identified by similarity to SP:P06613; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102438.1 identified by similarity to GP:2565334; match to protein family HMM PF01077; match to protein family HMM PF03460 YP_102439.1 identified by similarity to GP:17429445 YP_102440.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_102441.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_102442.1 identified by similarity to SP:P23845; match to protein family HMM PF00009; match to protein family HMM PF03144 YP_102443.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1 YP_102444.1 identified by match to protein family HMM PF01903 YP_102445.1 identified by similarity to GP:17429438; match to protein family HMM PF03739 YP_102446.1 identified by match to protein family HMM PF03739 YP_102447.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_102448.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_102450.1 identified by similarity to SP:P00103; match to protein family HMM PF00034 YP_102451.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_102452.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_102453.1 identified by similarity to SP:P52670; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102454.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_102455.1 identified by similarity to OMNI:NTL03PA04496; match to protein family HMM PF04402 YP_102457.1 identified by similarity to SP:P06129; match to protein family HMM PF00593 YP_102458.1 identified by match to protein family HMM PF01032 YP_102459.1 identified by match to protein family HMM PF00005 YP_102460.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_102461.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_102462.1 identified by match to protein family HMM PF00300 YP_102464.1 identified by similarity to SP:P37028; match to protein family HMM PF01497 YP_102465.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase YP_102466.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_102467.1 identified by similarity to SP:P29931; match to protein family HMM PF02283 YP_102468.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_102469.1 identified by match to protein family HMM PF04173 YP_102470.1 identified by match to protein family HMM PF00991 YP_102471.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_102472.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_102474.1 identified by similarity to GP:17429406; match to protein family HMM PF02616 YP_102475.1 identified by match to protein family HMM PF01103 YP_102476.1 identified by similarity to OMNI:NTL01RS2383; match to protein family HMM PF04357 YP_102478.1 identified by match to protein family HMM PF00891 YP_102479.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_102481.1 identified by match to protein family HMM PF00691 YP_102482.1 identified by match to protein family HMM PF00991 YP_102483.1 identified by similarity to SP:P20379; match to protein family HMM PF00080 YP_102484.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_102485.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711 YP_102487.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_102488.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_102489.1 identified by match to protein family HMM PF00577 YP_102490.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102491.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102492.1 identified by similarity to GP:17431973 YP_102493.1 identified by similarity to GP:17431971; match to protein family HMM PF05229 YP_102494.1 identified by similarity to OMNI:NTL02ML1283 YP_102495.1 identified by match to protein family HMM PF01209 YP_102497.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_102498.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_102499.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_102500.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis YP_102501.1 identified by similarity to GP:17429375 YP_102502.1 identified by match to protein family HMM PF00083 YP_102503.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_102504.1 identified by similarity to SP:P23883; match to protein family HMM PF00171 YP_102505.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_102506.1 identified by match to protein family HMM PF01541 YP_102508.1 identified by similarity to OMNI:NTL01RS2348; match to protein family HMM PF04339 YP_102509.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_102510.1 identified by similarity to SP:P05826; match to protein family HMM PF00543 YP_102511.1 identified by similarity to SP:Q04064 YP_102512.1 identified by match to protein family HMM PF00005 YP_102513.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_102514.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096 YP_102516.1 identified by similarity to SP:P03025; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_102517.1 identified by similarity to GP:4433394; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_102518.1 identified by match to protein family HMM PF00528 YP_102519.1 identified by match to protein family HMM PF00005 YP_102520.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102521.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102522.1 identified by match to protein family HMM PF00043 YP_102523.1 identified by match to protein family HMM PF00083 YP_102524.1 identified by similarity to SP:Q8XQF2; match to protein family HMM PF02694 YP_102525.1 3'-5' exonuclease of DNA polymerase III YP_102526.1 identified by similarity to SP:P00647; match to protein family HMM PF00075 YP_102527.1 identified by similarity to OMNI:NMB1296 YP_102528.1 identified by similarity to SP:Q47677; match to protein family HMM PF00753 YP_102529.1 identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476 YP_102530.1 identified by match to protein family HMM PF00083 YP_102532.1 identified by match to protein family HMM PF00165 YP_102533.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_102534.1 identified by match to protein family HMM PF01810 YP_102535.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_102536.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_102538.1 identified by similarity to GP:17428540; match to protein family HMM PF01985 YP_102539.1 identified by similarity to SP:P28692; match to protein family HMM PF01728 YP_102540.1 identified by similarity to SP:P28691; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM TIGR01241 YP_102541.1 identified by similarity to SP:P26282; match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_102542.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_102543.1 identified by similarity to SP:P06128; match to protein family HMM PF01547 YP_102544.2 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_102545.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_102546.1 identified by match to protein family HMM PF01895 YP_102547.1 identified by similarity to SP:P08402; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_102548.1 identified by similarity to SP:P08400; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_102550.2 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_102551.1 identified by match to protein family HMM PF02541 YP_102552.1 identified by match to protein family HMM PF01569 YP_102553.1 identified by similarity to GP:17430401 YP_102555.1 identified by similarity to GP:17429911 YP_102556.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249 YP_102557.1 identified by similarity to GP:17978632 YP_102561.1 identified by similarity to SP:P39062; match to protein family HMM PF00501 YP_102562.1 identified by similarity to SP:P33648; match to protein family HMM PF01476; match to protein family HMM PF01551 YP_102563.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102564.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102565.1 identified by similarity to OMNI:NTL03PA03906 YP_102566.1 identified by similarity to GB:CAE16974.1 YP_102567.1 identified by match to protein family HMM PF00376; match to protein family HMM PF02409 YP_102568.1 identified by match to protein family HMM PF00392 YP_102569.1 identified by similarity to OMNI:CC2974 YP_102570.1 identified by similarity to SP:Q44315; match to protein family HMM PF00128 YP_102571.1 identified by similarity to SP:P15977; match to protein family HMM PF02446; match to protein family HMM TIGR00217 YP_102572.1 identified by similarity to SP:O52520; match to protein family HMM PF00128; match to protein family HMM PF02922 YP_102573.1 identified by similarity to SP:P15067; match to protein family HMM PF00128; match to protein family HMM PF02922 YP_102574.1 identified by match to protein family HMM PF00128 YP_102576.1 identified by similarity to SP:P12625; match to protein family HMM PF00041; match to protein family HMM TIGR01840 YP_102579.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102580.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_102584.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_102586.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662 YP_102587.1 identified by similarity to SP:P02934; match to protein family HMM PF00691 YP_102588.1 identified by match to protein family HMM PF00515 YP_102589.1 identified by similarity to GP:4107150; match to protein family HMM PF00816 YP_102591.1 identified by similarity to SP:Q01745; match to protein family HMM PF00652; match to protein family HMM PF01344 YP_102593.1 identified by similarity to GP:17431218 YP_102594.1 identified by similarity to GP:17431235 YP_102595.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_102596.1 identified by similarity to GP:17430644 YP_102597.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102598.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102600.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_102604.1 identified by similarity to GP:2213665 YP_102606.1 identified by match to protein family HMM PF04909 YP_102608.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102609.1 identified by similarity to OMNI:NTL03PA04649 YP_102610.1 identified by similarity to SP:P33128 YP_102611.1 identified by similarity to GP:13649960; match to protein family HMM PF05229 YP_102612.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_102613.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_102614.1 identified by match to protein family HMM PF00083; match to protein family HMM TIGR00711 YP_102615.1 identified by similarity to SP:P52599; match to protein family HMM PF00529 YP_102617.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_102618.1 identified by match to protein family HMM PF04185 YP_102620.1 identified by similarity to GB:AAS05711.1 YP_102622.1 identified by match to protein family HMM PF00293 YP_102623.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_102625.1 identified by match to protein family HMM PF02515 YP_102626.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_102627.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102628.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102629.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102631.1 identified by match to protein family HMM PF00293 YP_102632.1 identified by similarity to SP:Q9WZM2; match to protein family HMM PF01906 YP_102633.1 identified by match to protein family HMM PF00465 YP_102634.1 identified by match to protein family HMM PF03061 YP_102635.1 identified by match to protein family HMM PF02653 YP_102636.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02653 YP_102637.1 identified by similarity to SP:P21630; match to protein family HMM PF00005 YP_102638.1 identified by similarity to SP:P42413 YP_102639.1 This gene assignment is based partly on positional information.identified by similarity to SP:P42416 YP_102640.1 This gene assignment is based partly on positional information.identified by similarity to SP:P42415; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_102641.1 This gene assignment is based partly on positional information.identified by similarity to SP:P42414; match to protein family HMM PF00294 YP_102642.1 identified by match to protein family HMM PF00005 YP_102643.1 identified by match to protein family HMM PF02653 YP_102644.1 identified by match to protein family HMM PF00532 YP_102645.1 identified by similarity to OMNI:NTL01RS1249; match to protein family HMM PF01380 YP_102646.1 identified by similarity to GP:3088561; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_102647.1 identified by similarity to GP:17427822; match to protein family HMM PF01206 YP_102649.1 identified by similarity to GP:2769532; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_102650.1 identified by match to protein family HMM PF01476 YP_102651.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF05226 YP_102652.1 identified by similarity to OMNI:NTL01RS2124 YP_102653.1 identified by similarity to GP:1628575; match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_102654.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_102655.1 identified by match to protein family HMM PF00580 YP_102656.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_102657.1 identified by similarity to SP:P52067 YP_102658.1 identified by similarity to SP:P07017; match to protein family HMM PF00015 YP_102659.1 identified by similarity to SP:P24130; similarity to OMNI:NTL03PA03304; match to protein family HMM PF00529 YP_102661.1 identified by similarity to SP:P24128; match to protein family HMM PF04632 YP_102662.1 identified by similarity to SP:P24126; match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_102663.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102665.1 identified by match to protein family HMM PF00149 YP_102666.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_102667.1 identified by similarity to GP:17428573 YP_102668.1 identified by match to protein family HMM PF00258 YP_102669.1 identified by similarity to SP:P32146; match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_102670.1 identified by similarity to GP:17428576 YP_102671.1 identified by match to protein family HMM PF00571 YP_102672.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_102673.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102674.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102675.1 identified by match to protein family HMM PF00376 YP_102677.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_102678.1 identified by match to protein family HMM PF00873 YP_102679.1 identified by match to protein family HMM TIGR01730 YP_102680.1 identified by match to protein family HMM PF00440 YP_102681.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00654 YP_102682.1 identified by similarity to OMNI:PP3661; match to protein family HMM PF03601; match to protein family HMM TIGR00698 YP_102683.1 identified by similarity to SP:P25544; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102685.1 identified by similarity to OMNI:NTL03PA02260 YP_102686.1 identified by match to protein family HMM PF00294 YP_102687.1 identified by match to protein family HMM PF00083 YP_102689.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_102690.1 identified by similarity to GP:17430477 YP_102692.1 identified by similarity to OMNI:NTL01RSA1250 YP_102693.1 identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199 YP_102696.1 identified by similarity to OMNI:NTL01AT0926 YP_102697.1 identified by similarity to GP:15024537 YP_102698.1 identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383 YP_102703.1 identified by match to protein family HMM PF00804; match to protein family HMM PF00924 YP_102704.1 identified by similarity to SP:Q00790; match to protein family HMM PF04205 YP_102705.1 identified by match to protein family HMM PF00034 YP_102707.1 identified by similarity to GP:1197370; match to protein family HMM PF05573 YP_102709.1 identified by similarity to SP:P19844; match to protein family HMM PF00005 YP_102710.1 identified by similarity to SP:P19843; match to protein family HMM PF05048 YP_102711.1 reduces nitrous oxide to nitrogen YP_102712.1 identified by similarity to SP:P41780; match to protein family HMM PF02424 YP_102713.1 identified by match to protein family HMM PF00005 YP_102715.1 identified by similarity to SP:P02942; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_102717.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_102718.1 identified by similarity to SP:O05616 YP_102719.1 identified by match to protein family HMM PF00999 YP_102720.1 identified by match to protein family HMM PF01494 YP_102724.1 identified by similarity to SP:P52090; match to protein family HMM TIGR01840 YP_102726.1 identified by similarity to OMNI:NTL01SS02055 YP_102727.1 identified by similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_102730.1 identified by similarity to SP:P31697; match to protein family HMM PF00345; match to protein family HMM PF02753 YP_102731.1 identified by match to protein family HMM PF00577 YP_102732.1 identified by similarity to SP:P04128; match to protein family HMM PF00419 YP_102734.1 identified by match to protein family HMM PF05658; match to protein family HMM PF05662 YP_102736.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_102738.1 identified by similarity to SP:P15558; match to protein family HMM PF01804 YP_102739.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102740.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102743.1 identified by similarity to GP:17431568 YP_102745.1 identified by similarity to GP:17429820 YP_102746.1 identified by similarity to OMNI:NTL02MLB0118 YP_102748.1 identified by match to protein family HMM PF03969 YP_102749.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_102750.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_102751.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_102752.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_102754.1 identified by match to protein family HMM PF01047 YP_102755.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_102756.1 identified by similarity to SP:P27303; match to protein family HMM PF00529 YP_102757.1 identified by match to protein family HMM TIGR00711 YP_102758.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_102759.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_102760.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_102761.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_102762.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_102763.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_102764.1 identified by similarity to GP:17428299; match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_102765.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102767.1 identified by similarity to GP:13310690 YP_102769.1 identified by similarity to GP:17427154; match to protein family HMM PF02698 YP_102770.1 identified by similarity to OMNI:NMB1575; match to protein family HMM PF02619; match to protein family HMM PF03992 YP_102771.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102772.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102773.1 identified by similarity to OMNI:NTL01RS1146 YP_102775.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102776.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102777.1 identified by similarity to GB:AAQ60745.1 YP_102780.1 identified by match to protein family HMM PF00376 YP_102781.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_102782.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_102783.2 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_102784.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_102785.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_102786.1 identified by similarity to SP:P02999; match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 YP_102787.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_102788.1 identified by similarity to SP:P11585; match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_102789.1 identified by match to protein family HMM PF01042 YP_102790.1 identified by match to protein family HMM PF00561 YP_102792.1 identified by similarity to OMNI:NTL03PA02566 YP_102793.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102794.1 identified by similarity to GB:AAQ60479.1 YP_102795.1 identified by match to protein family HMM PF01522 YP_102796.1 identified by match to protein family HMM PF00106 YP_102797.1 identified by similarity to GP:4007785; match to protein family HMM PF01144 YP_102798.1 identified by similarity to GP:4007784; match to protein family HMM PF01144 YP_102799.1 identified by match to protein family HMM PF00196 YP_102802.1 identified by match to protein family HMM PF03061 YP_102803.1 identified by match to protein family HMM PF00106 YP_102804.1 identified by similarity to SP:Q16134; match to protein family HMM PF05187 YP_102805.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102806.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102807.1 identified by match to protein family HMM PF02373 YP_102809.1 identified by match to protein family HMM PF00550; match to protein family HMM PF00975 YP_102811.1 identified by similarity to GP:967990; match to protein family HMM PF00267 YP_102812.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_102814.1 identified by similarity to OMNI:NTL01SM00347; match to protein family HMM PF00892 YP_102815.1 identified by similarity to SP:P07365; match to protein family HMM PF01584 YP_102816.1 identified by similarity to GP:17430977; match to protein family HMM PF00015 YP_102819.1 activates fatty acids by binding to coenzyme A YP_102821.1 identified by similarity to GP:19572312 YP_102823.1 identified by match to protein family HMM PF04069 YP_102824.1 identified by match to protein family HMM PF00528 YP_102825.1 identified by match to protein family HMM PF00005 YP_102826.1 identified by match to protein family HMM PF00528 YP_102829.1 identified by similarity to SP:P18275; match to protein family HMM PF00324; match to protein family HMM TIGR00905 YP_102830.1 catalyzes the degradation of arginine to citruline and ammonia YP_102831.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway YP_102832.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_102833.1 identified by match to protein family HMM PF00106 YP_102834.1 identified by similarity to OMNI:NTL03PA01330; match to protein family HMM PF03928 YP_102835.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102836.1 identified by similarity to OMNI:CC1316; match to protein family HMM PF00043; match to protein family HMM PF02798 YP_102837.1 identified by match to protein family HMM PF01047 YP_102838.1 identified by similarity to SP:P04816; match to protein family HMM PF01094 YP_102839.1 identified by match to protein family HMM PF01047 YP_102840.1 identified by match to protein family HMM PF00083 YP_102841.1 identified by similarity to GP:6942165; match to protein family HMM PF00041; match to protein family HMM PF02638 YP_102842.1 identified by similarity to SP:P21922; match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_102843.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_102844.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_102845.1 identified by similarity to SP:P21921; match to protein family HMM PF00590; match to protein family HMM TIGR01468 YP_102846.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_102847.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate YP_102848.1 catalyzes the formation of precorrin-3 from precorrin-2 YP_102849.1 identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466 YP_102850.1 identified by similarity to SP:P13656; match to protein family HMM PF00704; match to protein family HMM PF02839 YP_102852.1 identified by similarity to SP:Q53547; match to protein family HMM PF02230 YP_102853.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide YP_102854.1 identified by match to protein family HMM PF02492 YP_102855.1 identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802 YP_102856.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3 YP_102857.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_102858.1 identified by similarity to SP:P29946; match to protein family HMM PF01656 YP_102860.1 identified by match to protein family HMM PF00593; match to protein family HMM TIGR01783 YP_102861.1 identified by similarity to SP:Q51548 YP_102862.1 identified by similarity to GP:13094061; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_102864.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01194 YP_102865.1 identified by similarity to GP:17432022 YP_102866.1 identified by similarity to SP:P15028; match to protein family HMM PF01497 YP_102867.1 identified by similarity to SP:P39405 YP_102868.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome YP_102869.1 identified by similarity to SP:P23878; match to protein family HMM PF00005 YP_102870.1 identified by similarity to GP:1890776 YP_102871.1 identified by match to protein family HMM PF03621 YP_102872.1 RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease YP_102874.1 identified by match to protein family HMM PF00106 YP_102875.1 identified by similarity to OMNI:TM0284; match to protein family HMM PF00370; match to protein family HMM PF02782 YP_102876.1 identified by similarity to SP:Q06004; match to protein family HMM PF00107 YP_102877.1 identified by similarity to SP:P36948; match to protein family HMM PF02653 YP_102878.1 identified by similarity to SP:P04983; match to protein family HMM PF00005 YP_102879.1 identified by similarity to SP:P02925; match to protein family HMM PF00532 YP_102880.1 identified by match to protein family HMM PF00165 YP_102882.1 identified by similarity to GP:4731433 YP_102884.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102885.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102886.1 identified by similarity to SP:P45600; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_102887.1 identified by similarity to SP:P16676; match to protein family HMM PF00005 YP_102888.1 identified by similarity to SP:P16702; match to protein family HMM PF00528 YP_102889.1 identified by similarity to SP:P06997; match to protein family HMM PF01547 YP_102890.1 Represses a number of genes involved in the response to DNA damage YP_102893.1 identified by similarity to OMNI:CC1752 YP_102894.1 identified by match to protein family HMM PF00582 YP_102895.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102896.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102897.1 involved in the export of lipooligosaccharides during nodulation YP_102898.1 identified by similarity to SP:P55475; match to protein family HMM PF01061; match to protein family HMM TIGR01291 YP_102900.1 identified by match to protein family HMM PF03773 YP_102901.1 identified by match to protein family HMM PF00248 YP_102902.1 identified by similarity to OMNI:NTL03PA04831; match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_102903.1 identified by match to protein family HMM PF01638 YP_102905.1 identified by match to protein family HMM PF00375 YP_102906.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742 YP_102907.1 This IS element is interrupted by an IS407 element.identified by similarity to GP:9930476; similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_102908.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102909.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102910.1 This IS element is interrupted by an IS407 element.identified by similarity to GP:9930476; similarity to OMNI:NTL01RS2573 YP_102912.1 identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638 YP_102913.1 identified by similarity to SP:P38053; match to protein family HMM PF00005 YP_102914.1 identified by similarity to SP:P75851; match to protein family HMM PF00528 YP_102915.1 catalyzes the release of sulfite from alkanesulfonates YP_102917.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_102918.1 identified by match to protein family HMM PF00893 YP_102919.1 identified by similarity to SP:P29953 YP_102921.1 identified by match to protein family HMM PF00293 YP_102922.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_102923.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_102924.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_102925.1 identified by match to protein family HMM PF00497 YP_102926.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_102927.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102928.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_102929.1 identified by similarity to SP:O05265; match to protein family HMM PF01408 YP_102930.1 identified by match to protein family HMM PF00392 YP_102931.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_102932.1 identified by similarity to SP:P75820; match to protein family HMM PF01510 YP_102933.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186 YP_102934.1 identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_102935.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_102936.1 identified by similarity to SP:P07018; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_102937.1 identified by match to protein family HMM PF04185 YP_102939.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740 YP_102940.1 identified by similarity to OMNI:NTL02ML0586 YP_102941.1 identified by match to protein family HMM PF00583 YP_102942.1 identified by match to protein family HMM PF00083 YP_102943.1 identified by match to protein family HMM PF00440 YP_102944.1 identified by similarity to SP:P29212; match to protein family HMM PF00501 YP_102945.1 identified by similarity to GP:17427544 YP_102947.1 identified by match to protein family HMM PF01423; match to protein family HMM PF03329 YP_102948.1 identified by similarity to GP:17431551 YP_102949.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_102950.1 identified by similarity to GP:17431553 YP_102951.1 identified by match to protein family HMM PF00515 YP_102952.1 identified by similarity to GP:17431556 YP_102953.1 identified by similarity to GP:17431559 YP_102954.1 identified by match to protein family HMM PF00263 YP_102955.1 identified by match to protein family HMM PF06981 YP_102956.1 identified by similarity to SP:P36642 YP_102958.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_102960.1 identified by match to protein family HMM PF00528 YP_102961.1 identified by similarity to SP:P31134; match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_102962.1 identified by similarity to SP:P31133; match to protein family HMM PF01547 YP_102963.1 identified by similarity to GP:17428472 YP_102964.1 identified by match to protein family HMM PF03922 YP_102965.1 identified by match to protein family HMM PF03060 YP_102966.1 identified by similarity to SP:P25553; match to protein family HMM PF00171 YP_102968.1 identified by match to protein family HMM PF00005 YP_102969.1 identified by similarity to OMNI:NTL03PA04880; match to protein family HMM PF05170 YP_102970.1 identified by match to protein family HMM PF00005 YP_102971.1 identified by similarity to GP:17427759; match to protein family HMM PF03649; match to protein family HMM TIGR00245 YP_102973.1 identified by similarity to SP:P06862; match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_102974.1 catalyzes the formation of L-homocysteine from cystathionine YP_102975.1 identified by similarity to GP:17428654 YP_102976.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA YP_102977.1 identified by similarity to SP:P50845; match to protein family HMM PF00294 YP_102978.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_102979.1 identified by similarity to GP:17428650; match to protein family HMM PF05233; match to protein family HMM TIGR01848 YP_102980.1 catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis YP_102981.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_102982.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01838 YP_102983.1 identified by similarity to GP:17428645; match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_102984.1 identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_102985.1 identified by similarity to SP:Q50985; match to protein family HMM PF03696 YP_102986.1 identified by similarity to SP:P54394 YP_102987.1 identified by similarity to GP:17428641; match to protein family HMM PF04325 YP_102988.1 identified by similarity to GP:17428640 YP_102989.1 identified by similarity to SP:Q45388; match to protein family HMM PF00575 YP_102991.1 identified by match to protein family HMM PF02705 YP_102992.1 identified by match to protein family HMM PF00156 YP_102993.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_102995.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_102997.1 identified by similarity to SP:P25661; match to protein family HMM PF01145 YP_102998.1 identified by similarity to SP:P25662; match to protein family HMM PF01145 YP_102999.1 identified by similarity to SP:P25519; match to protein family HMM TIGR00231 YP_103000.1 Stimulates the elongation of poly(A) tails YP_103001.2 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_103002.1 identified by match to protein family HMM PF01011 YP_103003.1 identified by similarity to GP:17428231 YP_103004.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_103005.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_103006.1 identified by similarity to OMNI:NTL01RS1214 YP_103007.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_103008.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_103009.1 identified by similarity to SP:P06967; match to protein family HMM PF01027 YP_103010.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_103011.1 identified by match to protein family HMM PF03372 YP_103013.1 identified by similarity to OMNI:NTL01NM01512 YP_103014.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses YP_103015.1 identified by similarity to SP:P33648; match to protein family HMM PF01476; match to protein family HMM PF01551 YP_103016.1 identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080 YP_103017.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_103018.1 identified by match to protein family HMM PF02515 YP_103019.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_103020.1 identified by similarity to GP:17428206; match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_103021.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_103023.1 identified by similarity to SP:P00274; match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_103024.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_103025.1 identified by match to protein family HMM PF00376 YP_103026.1 identified by similarity to SP:P52600 YP_103027.1 identified by similarity to GP:17428198 YP_103028.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_103029.1 identified by similarity to GP:17428195 YP_103030.1 identified by similarity to SP:P37340; match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_103032.1 identified by match to protein family HMM PF02627 YP_103033.1 identified by match to protein family HMM PF00376 YP_103034.1 identified by similarity to GP:10505056 YP_103035.1 identified by similarity to OMNI:NTL02EC4603 YP_103036.1 identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861 YP_103037.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_103038.1 identified by similarity to SP:P30749; match to protein family HMM PF02391 YP_103039.1 identified by similarity to SP:P30748; match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_103040.1 identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_103042.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_103043.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_103044.1 identified by match to protein family HMM PF02366 YP_103045.1 identified by similarity to OMNI:NTL01RS1323 YP_103046.1 identified by match to protein family HMM PF01041 YP_103047.1 identified by similarity to SP:P77757; match to protein family HMM PF00535 YP_103048.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911 YP_103049.1 identified by similarity to OMNI:NTL01RS1319 YP_103050.1 identified by similarity to OMNI:NTL01RS1318; match to protein family HMM PF01522 YP_103051.1 identified by match to protein family HMM PF00578 YP_103052.1 identified by similarity to SP:P46343; match to protein family HMM PF02562 YP_103053.1 identified by match to protein family HMM PF00877 YP_103054.1 identified by match to protein family HMM PF01384 YP_103055.1 identified by similarity to GP:17428326; match to protein family HMM PF01865 YP_103056.1 unwinds double stranded DNA YP_103057.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_103058.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_103059.1 identified by similarity to SP:P07013 YP_103060.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_103061.1 identified by similarity to OMNI:NTL02ML2940 YP_103062.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_103063.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409 YP_103064.1 identified by similarity to GP:927526 YP_103065.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_103066.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_103068.1 identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520 YP_103071.1 identified by similarity to GP:17428896 YP_103072.1 identified by match to protein family HMM PF00534 YP_103073.1 identified by similarity to OMNI:NTL03PA00788 YP_103074.1 identified by match to protein family HMM PF00924 YP_103076.1 identified by match to protein family HMM PF00023 YP_103077.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_103078.1 identified by similarity to SP:P21861; match to protein family HMM PF00583 YP_103079.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_103080.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_103081.1 identified by similarity to GP:17428800; match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_103082.1 identified by similarity to GP:17428799; match to protein family HMM PF01571 YP_103083.1 identified by match to protein family HMM PF00583 YP_103084.1 identified by similarity to GP:11513478 YP_103085.1 identified by similarity to SP:P76113; match to protein family HMM PF00107 YP_103086.1 identified by similarity to GP:17428781; match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_103088.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_103089.1 identified by similarity to SP:P21369; match to protein family HMM PF00857 YP_103090.1 Marked because it is not clear if this gene encodes activity for 3-hydroxybutyryl-CoA epimerase.identified by similarity to GP:206069; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_103091.1 activates fatty acids by binding to coenzyme A YP_103092.1 identified by similarity to GP:17428765; match to protein family HMM PF02696 YP_103093.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357 YP_103094.1 Involved in cell division; probably involved in intracellular septation YP_103095.1 identified by match to protein family HMM PF01722 YP_103096.1 identified by match to protein family HMM PF00639 YP_103097.1 identified by match to protein family HMM PF00583 YP_103098.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_103099.1 identified by similarity to SP:P29011 YP_103100.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_103101.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_103102.1 identified by match to protein family HMM PF00005 YP_103103.1 identified by similarity to SP:P29679; match to protein family HMM PF00657 YP_103105.1 identified by similarity to SP:P77241; match to protein family HMM PF00639 YP_103107.1 identified by similarity to GP:16413115 YP_103110.1 identified by similarity to SP:P08177; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 YP_103111.1 binds and unfolds substrates as part of the ClpXP protease YP_103112.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_103113.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_103115.1 identified by similarity to SP:P77364; match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_103116.1 identified by match to protein family HMM PF01047 YP_103117.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_103118.1 identified by match to protein family HMM PF00196 YP_103119.1 identified by similarity to SP:P24305; match to protein family HMM PF00267 YP_103120.1 identified by similarity to OMNI:NTL03PA03773 YP_103121.1 identified by match to protein family HMM PF00850 YP_103122.1 identified by similarity to GP:498885 YP_103124.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_103125.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_103126.1 identified by similarity to SP:P37294; match to protein family HMM PF00494 YP_103127.1 identified by match to protein family HMM TIGR01409 YP_103128.1 identified by similarity to GP:17428666 YP_103129.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation YP_103130.1 identified by similarity to GP:3288065; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_103131.1 identified by match to protein family HMM PF00578 YP_103132.1 identified by similarity to GP:20149905; match to protein family HMM PF02627 YP_103133.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_103134.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_103135.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580 YP_103137.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_103138.1 identified by similarity to SP:P05792; match to protein family HMM PF00291 YP_103140.1 identified by similarity to GP:21114297 YP_103141.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_103142.1 identified by match to protein family HMM PF04012 YP_103144.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_103145.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_103147.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_103148.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_103149.1 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_103150.1 identified by similarity to GB:CAD15828.1 YP_103151.1 identified by match to protein family HMM PF01522 YP_103152.1 identified by similarity to SP:Q00924; match to protein family HMM PF01177 YP_103153.1 identified by match to protein family HMM PF02133 YP_103154.1 identified by match to protein family HMM PF00392 YP_103155.1 identified by similarity to GP:9930476; similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_103156.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine YP_103157.1 identified by match to protein family HMM PF00383 YP_103158.1 identified by similarity to OMNI:NTL01BH0861 YP_103160.1 identified by similarity to OMNI:NTL03PA00056 YP_103163.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_103164.1 identified by similarity to GP:17428445 YP_103165.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_103167.1 identified by similarity to OMNI:NTL01SM00748 YP_103168.1 identified by similarity to OMNI:NTL01SM00750 YP_103169.1 identified by similarity to OMNI:NTL01RS1428; match to protein family HMM PF00892 YP_103170.1 identified by match to protein family HMM PF03658 YP_103171.1 identified by similarity to GP:17428440; match to protein family HMM PF03654 YP_103172.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_103173.1 identified by match to protein family HMM PF01145 YP_103174.1 identified by similarity to GP:17428437 YP_103175.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_103177.1 identified by similarity to GP:18699092 YP_103178.1 identified by similarity to SP:P42790; match to protein family HMM PF00082 YP_103179.1 identified by similarity to GP:17428435; match to protein family HMM PF03618 YP_103180.1 identified by match to protein family HMM PF00588 YP_103181.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_103182.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_103183.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_103184.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_103185.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_103186.1 identified by similarity to SP:P31519; match to protein family HMM PF03938 YP_103187.1 identified by match to protein family HMM PF01103 YP_103188.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_103189.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_103190.1 identified by match to protein family HMM PF01148 YP_103191.1 identified by similarity to SP:Q47675; match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_103192.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_103193.1 Catalyzes the phosphorylation of UMP to UDP YP_103194.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_103195.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_103196.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_103197.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_103198.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_103199.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_103200.1 identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 YP_103202.1 identified by similarity to OMNI:NTL01RS1397 YP_103203.1 identified by similarity to GB:CAD10419.2; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_103204.1 identified by similarity to OMNI:NTL01RS1395; match to protein family HMM PF00892 YP_103205.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate YP_103206.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_103207.1 identified by similarity to GP:17428406; match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_103208.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_103209.1 involved in methylation of ribosomal protein L3 YP_103210.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_103211.1 identified by similarity to SP:P52035; match to protein family HMM PF00255 YP_103212.1 identified by match to protein family HMM PF00005 YP_103214.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_103215.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_103217.1 identified by similarity to SP:P76422; match to protein family HMM TIGR00097 YP_103219.1 identified by similarity to OMNI:NTL03PA03089 YP_103220.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_103221.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_103222.1 identified by match to protein family HMM PF00814 YP_103223.1 identified by match to protein family HMM PF00887 YP_103224.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_103225.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_103226.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates YP_103227.1 identified by match to protein family HMM PF00582 YP_103228.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_103229.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_103230.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_103232.1 identified by similarity to GP:17428370; match to protein family HMM PF03674 YP_103233.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_103234.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_103236.1 identified by match to protein family HMM PF00583 YP_103237.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_103238.1 identified by match to protein family HMM PF01734 YP_103239.1 identified by match to protein family HMM PF00877 YP_103241.1 identified by match to protein family HMM PF00005 YP_103242.1 identified by similarity to SP:P33915; match to protein family HMM PF00528 YP_103243.1 identified by match to protein family HMM PF00496 YP_103244.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_103245.1 identified by similarity to GP:17429933 YP_103247.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_103248.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_103249.1 identified by similarity to SP:Q44532; match to protein family HMM PF00970 YP_103250.1 identified by match to protein family HMM PF00037 YP_103251.1 identified by match to protein family HMM PF00440 YP_103252.1 identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_103253.1 identified by similarity to GP:15981266 YP_103254.1 identified by similarity to SP:P11447; match to protein family HMM PF00206 YP_103255.1 identified by similarity to SP:P71128; match to protein family HMM PF00291 YP_103256.1 identified by match to protein family HMM PF00288 YP_103257.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_103258.1 identified by match to protein family HMM PF00535 YP_103259.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_103260.1 identified by match to protein family HMM PF01757 YP_103261.1 identified by similarity to OMNI:NTL02MLA0301 YP_103262.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_103263.1 identified by similarity to SP:Q58094; match to protein family HMM PF00456 YP_103265.1 identified by match to protein family HMM PF02668 YP_103266.1 identified by similarity to GP:13932335 YP_103267.1 identified by similarity to GP:9478255 YP_103269.1 identified by similarity to GP:899317; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733 YP_103270.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_103272.1 identified by similarity to GP:1707644; match to protein family HMM PF00529; match to protein family HMM TIGR01409; match to protein family HMM TIGR01730 YP_103273.1 identified by similarity to GP:9947386; match to protein family HMM PF00873 YP_103275.1 identified by similarity to SP:P40601; match to protein family HMM PF00657; match to protein family HMM TIGR01414 YP_103276.1 identified by similarity to OMNI:VC0334 YP_103278.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_103279.1 identified by similarity to SP:P52097; match to protein family HMM PF01171 YP_103280.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_103281.1 identified by similarity to SP:Q92383; match to protein family HMM PF00730 YP_103282.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_103283.1 identified by match to protein family HMM PF00515 YP_103284.1 identified by similarity to SP:P20752; match to protein family HMM PF00160 YP_103285.1 identified by similarity to SP:P23869; match to protein family HMM PF00160 YP_103286.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_103288.1 identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_103289.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050 YP_103290.1 identified by similarity to SP:P22783; match to protein family HMM PF00459 YP_103293.1 This protein performs the mismatch recognition step during the DNA repair process YP_103294.1 identified by similarity to GP:17428164 YP_103296.1 identified by match to protein family HMM PF00753 YP_103297.1 identified by similarity to OMNI:NTL01RS1146 YP_103298.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_103299.1 identified by similarity to OMNI:NTL01RS1144 YP_103300.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_103301.1 identified by match to protein family HMM PF02163 YP_103302.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_103303.1 identified by match to protein family HMM PF02231; match to protein family HMM PF02811 YP_103304.1 identified by match to protein family HMM PF00561 YP_103305.1 identified by similarity to GP:17428147; match to protein family HMM PF04305 YP_103306.1 identified by match to protein family HMM PF00132 YP_103307.1 identified by similarity to SP:P45803; match to protein family HMM PF01430 YP_103308.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein YP_103309.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_103310.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_103311.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_103312.1 identified by similarity to GP:17428138 YP_103313.1 identified by similarity to SP:P51973; match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_103314.1 identified by match to protein family HMM PF01026 YP_103315.1 identified by match to protein family HMM PF00005 YP_103316.1 identified by similarity to SP:P75958; match to protein family HMM PF02687 YP_103317.1 identified by similarity to GP:17428129 YP_103318.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_103319.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_103320.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_103321.1 identified by similarity to GP:17428040 YP_103322.1 identified by similarity to OMNI:VC0754; match to protein family HMM PF04384 YP_103323.1 identified by similarity to SP:P25528; match to protein family HMM PF00111 YP_103324.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_103325.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_103326.1 identified by similarity to GP:2271523; match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_103327.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999 YP_103328.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis YP_103329.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; match to protein family HMM TIGR02010 YP_103330.1 identified by similarity to SP:P53433; match to protein family HMM PF01451 YP_103332.1 identified by match to protein family HMM PF00037 YP_103333.1 identified by similarity to GP:17428627; match to protein family HMM PF02754 YP_103334.1 identified by match to protein family HMM PF01614 YP_103335.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_103336.1 identified by match to protein family HMM TIGR01841 YP_103337.1 identified by similarity to SP:P33364; match to protein family HMM PF00768 YP_103338.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_103339.1 identified by similarity to GP:497266; match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF02852; match to protein family HMM TIGR01350 YP_103340.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA YP_103341.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_103342.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_103343.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_103344.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_103346.1 identified by similarity to SP:P27298; match to protein family HMM PF01432 YP_103347.2 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_103348.1 identified by similarity to GP:11344599 YP_103349.1 identified by similarity to GP:11344600; match to protein family HMM TIGR00886 YP_103350.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01580 YP_103351.1 identified by similarity to SP:P11349; match to protein family HMM PF00037; match to protein family HMM TIGR01660 YP_103352.1 identified by similarity to SP:P11351; match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_103353.1 identified by similarity to SP:P19316; match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_103354.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518 YP_103355.1 identified by similarity to SP:P10957; match to protein family HMM PF00072; match to protein family HMM PF00196 YP_103357.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_103358.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_103359.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01818 YP_103360.1 identified by similarity to SP:P06712; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_103361.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_103362.1 identified by similarity to SP:P06711; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_103363.1 identified by similarity to GP:17428271 YP_103364.1 identified by match to protein family HMM PF00994 YP_103365.1 identified by similarity to OMNI:NTL01RS1255 YP_103367.1 identified by similarity to OMNI:NTL01RS1252 YP_103368.1 identified by similarity to SP:P43329; similarity to SP:Q14562; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01967 YP_103369.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_103370.1 identified by similarity to OMNI:NTL01RS1235; match to protein family HMM PF04362 YP_103371.1 identified by match to protein family HMM PF00083 YP_103372.1 identified by match to protein family HMM PF02515 YP_103373.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_103374.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_103375.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_103376.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_103378.1 identified by similarity to OMNI:VCA0090; match to protein family HMM PF00892 YP_103381.1 identified by match to protein family HMM PF00563 YP_103382.1 identified by match to protein family HMM PF00472 YP_103383.1 identified by similarity to SP:P04993 YP_103384.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609 YP_103385.1 identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450 YP_103387.1 identified by similarity to GP:17429912 YP_103389.1 identified by match to protein family HMM PF00324 YP_103391.1 identified by similarity to GP:3978164; match to protein family HMM PF01547 YP_103392.1 identified by similarity to GP:3978165; match to protein family HMM PF00528 YP_103393.1 identified by similarity to GP:3978166; match to protein family HMM PF00005 YP_103394.1 identified by match to protein family HMM PF01037 YP_103395.1 identified by similarity to OMNI:NTL01RSA0525 YP_103396.1 identified by match to protein family HMM PF02082 YP_103398.1 identified by similarity to OMNI:NTL03PA02635 YP_103402.1 identified by similarity to GP:17429023 YP_103403.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_103404.1 identified by similarity to GP:9950775 YP_103405.1 identified by similarity to GP:17429025 YP_103406.1 identified by similarity to GP:17429026; match to protein family HMM PF00246 YP_103407.1 catalyzes the transfer of an amino moiety YP_103408.1 identified by similarity to SP:P32105 YP_103409.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_103410.1 identified by similarity to SP:P36942; match to protein family HMM PF00300 YP_103411.1 identified by match to protein family HMM PF01636 YP_103412.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_103414.1 identified by similarity to OMNI:DRA0112 YP_103415.1 identified by match to protein family HMM PF01575 YP_103416.1 identified by match to protein family HMM PF01575 YP_103417.1 identified by match to protein family HMM PF00441 YP_103418.1 identified by similarity to GP:17429065 YP_103419.1 identified by match to protein family HMM PF00293 YP_103420.1 identified by similarity to GP:17429067 YP_103421.1 Catalyzes the transfer of electrons from NADH to quinone YP_103422.1 Catalyzes the transfer of electrons from NADH to quinone YP_103423.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_103424.1 Catalyzes the transfer of electrons from NADH to quinone YP_103425.1 Catalyzes the transfer of electrons from NADH to quinone YP_103426.1 Catalyzes the transfer of electrons from NADH to quinone YP_103427.1 Catalyzes the transfer of electrons from NADH to quinone YP_103428.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_103429.1 identified by similarity to SP:O07948; match to protein family HMM PF01512; match to protein family HMM TIGR01959 YP_103430.1 Catalyzes the transfer of electrons from NADH to quinone YP_103431.1 Catalyzes the transfer of electrons from NADH to quinone YP_103432.1 Catalyzes the transfer of electrons from NADH to quinone YP_103433.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_103434.1 Catalyzes the transfer of electrons from NADH to quinone YP_103435.1 identified by similarity to SP:P33582; match to protein family HMM PF03840 YP_103436.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_103437.1 identified by similarity to OMNI:NTL01RS2065; match to protein family HMM PF00107 YP_103438.1 identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_103439.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_103440.1 identified by similarity to SP:P21175; match to protein family HMM PF01094 YP_103442.1 identified by similarity to OMNI:NTL01RS1480 YP_103443.1 identified by match to protein family HMM PF00484 YP_103444.1 identified by match to protein family HMM PF00916 YP_103445.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_103446.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_103447.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_103448.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_103449.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_103450.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_103451.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate YP_103453.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_103454.1 identified by similarity to GP:17429098 YP_103455.1 identified by match to protein family HMM PF00149 YP_103456.1 identified by match to protein family HMM PF00534 YP_103457.1 identified by similarity to SP:P00556; match to protein family HMM PF01219 YP_103458.1 identified by match to protein family HMM PF00440 YP_103459.1 identified by similarity to SP:P48636; match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_103460.1 Converts glucose to D-glucono-1,5 lactone YP_103462.1 identified by similarity to OMNI:NTL01RS0071 YP_103463.1 identified by match to protein family HMM PF00083 YP_103464.1 identified by similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_103465.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_103466.1 identified by similarity to GP:17429108 YP_103468.1 identified by similarity to OMNI:DR2371 YP_103469.1 identified by similarity to SP:P30743; match to protein family HMM PF00893 YP_103470.1 identified by similarity to OMNI:NTL02ML1909; match to protein family HMM PF03891 YP_103471.1 identified by similarity to SP:P21866; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_103472.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex YP_103473.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_103474.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_103475.1 identified by match to protein family HMM TIGR02115 YP_103476.1 identified by similarity to SP:P28304; match to protein family HMM PF00107 YP_103477.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_103478.1 identified by match to protein family HMM PF00106 YP_103479.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_103480.1 identified by similarity to GP:17429209; match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_103481.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_103482.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_103483.1 catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP YP_103484.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_103485.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_103486.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_103487.1 identified by similarity to SP:P25537; match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_103488.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_103489.1 identified by similarity to GP:3618282 YP_103490.1 identified by similarity to SP:P40695 YP_103493.1 identified by similarity to GP:17429217 YP_103494.1 identified by similarity to OMNI:CC3266; match to protein family HMM PF04542 YP_103495.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_103497.1 identified by match to protein family HMM PF00083 YP_103499.1 identified by similarity to OMNI:NTL01RS0815 YP_103500.1 identified by similarity to GP:19423800; match to protein family HMM PF00535 YP_103502.1 identified by similarity to SP:P25742; match to protein family HMM PF01075 YP_103503.1 identified by match to protein family HMM PF00534 YP_103505.1 identified by similarity to SP:P37692; match to protein family HMM PF01075 YP_103506.1 identified by similarity to GP:3386374; match to protein family HMM PF00534 YP_103507.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_103508.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_103509.1 identified by match to protein family HMM PF00581 YP_103510.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_103512.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271 YP_103514.1 identified by similarity to GP:15157092 YP_103515.1 identified by similarity to GB:CAD17552.1 YP_103516.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_103517.1 identified by similarity to OMNI:NTL01RS0694 YP_103518.1 identified by similarity to SP:P46889; match to protein family HMM PF01580 YP_103520.1 identified by similarity to OMNI:NTL03PA04204 YP_103521.1 identified by match to protein family HMM PF00723 YP_103522.1 identified by similarity to GP:3641686; match to protein family HMM TIGR01849 YP_103523.1 identified by match to protein family HMM PF00440 YP_103524.1 Involved in the electron transport chain YP_103525.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_103526.1 identified by similarity to OMNI:NTL01RS1002; match to protein family HMM PF00892 YP_103527.1 identified by similarity to GP:17428014 YP_103528.1 identified by similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_103529.1 identified by match to protein family HMM PF00004 YP_103530.1 identified by similarity to GP:17428009 YP_103531.1 identified by match to protein family HMM PF03594; match to protein family HMM TIGR00843 YP_103533.1 Maintains the balance of metabolites in the pentose-phosphate pathway YP_103534.1 identified by match to protein family HMM PF00903 YP_103535.1 identified by match to protein family HMM PF00474 YP_103537.1 identified by similarity to OMNI:NMB0869 YP_103538.1 identified by similarity to SP:P26602; match to protein family HMM PF04345 YP_103539.1 molecular chaperone YP_103541.1 identified by match to protein family HMM PF00392 YP_103542.1 identified by similarity to OMNI:DR2014 YP_103543.1 identified by similarity to GP:17428000; match to protein family HMM PF00892 YP_103544.1 identified by match to protein family HMM PF00155 YP_103545.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_103546.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_103548.1 identified by match to protein family HMM PF01381 YP_103549.1 identified by match to protein family HMM PF00596 YP_103550.1 identified by match to protein family HMM PF00701 YP_103551.1 identified by match to protein family HMM PF03473 YP_103552.1 identified by match to protein family HMM PF00561 YP_103553.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_103554.1 identified by similarity to SP:P76279; match to protein family HMM PF04234 YP_103555.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_103556.1 identified by similarity to OMNI:NTL01RS2433 YP_103557.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose YP_103558.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_103559.1 identified by match to protein family HMM PF00583 YP_103560.1 identified by match to protein family HMM PF00005 YP_103561.1 identified by similarity to SP:P21628; match to protein family HMM PF02653 YP_103562.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_103563.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_103564.1 identified by similarity to GP:13518107; match to protein family HMM PF02719 YP_103565.1 identified by match to protein family HMM PF00953 YP_103566.1 identified by similarity to GP:13518105 YP_103567.1 identified by similarity to GP:3135685; match to protein family HMM PF00535 YP_103568.1 identified by similarity to GP:3135683; match to protein family HMM PF00535 YP_103569.1 identified by similarity to GP:13518101 YP_103570.1 identified by similarity to GP:13518100; match to protein family HMM PF01370 YP_103571.1 identified by similarity to GP:13518099; match to protein family HMM PF01757 YP_103572.1 identified by similarity to GP:13518098; match to protein family HMM PF00005 YP_103573.1 identified by similarity to GP:13518097; match to protein family HMM PF01061 YP_103574.1 identified by similarity to SP:P37760; match to protein family HMM PF04321; match to protein family HMM TIGR01214 YP_103575.1 identified by similarity to SP:P26394; match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_103576.1 identified by similarity to SP:P55254; match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_103577.1 identified by similarity to SP:P55295; match to protein family HMM PF01370; match to protein family HMM TIGR01181 YP_103578.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_103579.1 identified by match to protein family HMM PF01553 YP_103580.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_103581.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_103582.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_103583.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_103584.1 identified by similarity to SP:P43980; match to protein family HMM PF02622 YP_103586.1 identified by similarity to GP:13358861; match to protein family HMM PF00301 YP_103587.1 identified by similarity to SP:P76422 YP_103588.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_103589.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_103591.1 identified by match to protein family HMM PF01638 YP_103592.1 identified by match to protein family HMM PF00107 YP_103595.1 identified by similarity to OMNI:NTL03PA04591 YP_103596.1 identified by match to protein family HMM PF03922 YP_103598.1 identified by match to protein family HMM PF01638 YP_103600.1 identified by match to protein family HMM PF00753 YP_103601.1 identified by match to protein family HMM PF01381 YP_103602.1 identified by match to protein family HMM PF00583 YP_103603.1 identified by match to protein family HMM PF01810 YP_103604.1 identified by match to protein family HMM PF03009 YP_103605.1 identified by match to protein family HMM TIGR00711 YP_103606.1 identified by match to protein family HMM PF01925 YP_103608.1 identified by match to protein family HMM PF00450 YP_103610.1 identified by similarity to GP:2154711 YP_103611.1 identified by match to protein family HMM PF04972 YP_103612.1 identified by similarity to OMNI:NTL03PA03848 YP_103613.1 identified by match to protein family HMM PF01323 YP_103614.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_103615.1 identified by match to protein family HMM PF01032 YP_103616.1 identified by similarity to SP:P15031; match to protein family HMM PF00005 YP_103617.1 identified by match to protein family HMM PF00593; match to protein family HMM TIGR01783 YP_103619.1 identified by similarity to OMNI:NTL03PA01315 YP_103621.1 identified by similarity to SP:P22985; match to protein family HMM PF01315; match to protein family HMM PF02738 YP_103622.1 This gene assignment is based partly on its location adjacent to another gene that encodes an enzyme component with a characterized blast match.identified by match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450 YP_103625.1 identified by similarity to OMNI:NTL03PA03897; match to protein family HMM PF00892 YP_103626.1 identified by match to protein family HMM PF00165 YP_103627.1 identified by similarity to GP:2239081; match to protein family HMM PF00266 YP_103629.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_103630.1 Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes YP_103631.1 identified by match to protein family HMM PF00881 YP_103632.1 identified by match to protein family HMM PF00083 YP_103635.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR01266 YP_103636.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine YP_103637.1 identified by similarity to SP:Q51955; match to protein family HMM PF00083 YP_103638.1 identified by similarity to GP:17431172 YP_103639.1 identified by match to protein family HMM PF01360; match to protein family HMM PF01494 YP_103640.1 identified by match to protein family HMM PF00753 YP_103641.1 identified by match to protein family HMM PF00563 YP_103642.1 identified by similarity to OMNI:NTL03PA05466; match to protein family HMM PF04828 YP_103643.1 identified by match to protein family HMM PF01614 YP_103644.1 identified by similarity to SP:Q92947; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771 YP_103646.1 identified by similarity to GP:3420603; match to protein family HMM PF00578 YP_103647.1 identified by similarity to GP:17427764 YP_103649.1 identified by similarity to OMNI:NTL03PA04557 YP_103650.1 identified by similarity to OMNI:NTL01RS0726 YP_103652.1 identified by similarity to GB:AAM41769.1 YP_103653.1 identified by similarity to GP:17427739; match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_103654.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_103655.1 identified by match to protein family HMM PF00106 YP_103656.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_103657.1 identified by similarity to SP:P05828; match to protein family HMM PF01618 YP_103658.1 identified by similarity to SP:P05829; match to protein family HMM PF02472 YP_103659.1 identified by similarity to OMNI:NTL01RS0734 YP_103660.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_103661.1 identified by match to protein family HMM PF00691 YP_103662.1 identified by similarity to OMNI:NTL01XA3092 YP_103663.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_103664.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_103665.1 identified by match to protein family HMM PF00267 YP_103666.1 identified by similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_103667.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_103668.1 identified by similarity to SP:P17580; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_103669.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_103670.1 Essential for recycling GMP and indirectly, cGMP YP_103671.1 identified by similarity to GP:17429175; match to protein family HMM PF03755; match to protein family HMM TIGR00255 YP_103672.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_103673.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_103674.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_103677.1 identified by match to protein family HMM TIGR01352 YP_103678.1 identified by match to protein family HMM PF00083 YP_103680.1 identified by similarity to GP:15485190; match to protein family HMM PF01075; match to protein family HMM TIGR02193 YP_103681.1 identified by match to protein family HMM PF00654 YP_103682.1 identified by similarity to GP:17429170 YP_103683.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_103684.1 identified by similarity to SP:P18197; match to protein family HMM PF00991; match to protein family HMM TIGR01968 YP_103685.1 blocks the formation of polar Z-ring septums YP_103686.1 identified by match to protein family HMM PF00583 YP_103688.1 identified by similarity to GB:CAE14666.1 YP_103689.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_103690.1 identified by similarity to GP:17740525 YP_103691.1 identified by match to protein family HMM PF00004 YP_103692.1 participates with LolB in the incorporation of lipoprotein into the outer membrane YP_103693.1 identified by similarity to SP:P46889; match to protein family HMM PF01580 YP_103694.1 identified by similarity to SP:P09625; match to protein family HMM PF00070; match to protein family HMM TIGR01292 YP_103695.1 identified by match to protein family HMM PF01713 YP_103696.1 identified by match to protein family HMM PF03458 YP_103697.1 identified by similarity to GP:4895001; match to protein family HMM PF00005; match to protein family HMM PF03459 YP_103698.1 identified by match to protein family HMM PF00528 YP_103699.1 identified by similarity to GP:9964068; match to protein family HMM PF01547 YP_103700.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_103701.1 identified by similarity to GP:4558604; match to protein family HMM TIGR01198 YP_103702.1 glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_103704.1 identified by match to protein family HMM PF00497 YP_103705.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_103706.1 identified by similarity to SP:P41076; match to protein family HMM PF00005 YP_103707.1 catalyzes the formation of pyruvate from D-cysteine YP_103709.1 identified by match to protein family HMM PF00083; match to protein family HMM TIGR00710 YP_103712.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_103713.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_103714.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_103715.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis YP_103716.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_103717.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_103718.1 identified by similarity to SP:P53001; match to protein family HMM PF00155 YP_103719.1 identified by match to protein family HMM PF01464 YP_103721.1 identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148 YP_103722.1 identified by match to protein family HMM PF01810 YP_103723.2 catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine YP_103725.1 identified by similarity to OMNI:MT3708 YP_103726.1 identified by similarity to OMNI:NTL01RSA1383; match to protein family HMM PF02325 YP_103727.1 identified by similarity to SP:O66758 YP_103728.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_103731.1 identified by similarity to OMNI:NTL02ML3020 YP_103732.1 identified by match to protein family HMM PF02146 YP_103733.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_103734.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_103735.1 identified by similarity to GP:17427711 YP_103736.1 identified by match to protein family HMM PF03692 YP_103737.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_103739.1 identified by similarity to SP:P24206; match to protein family HMM PF01135 YP_103740.1 identified by match to protein family HMM PF00581 YP_103741.1 catalyze the conversion of beta amino acids to the corresponding beta keto acid with pyruvate as the amine acceptor YP_103742.1 identified by match to protein family HMM TIGR01409 YP_103743.1 identified by match to protein family HMM PF02653 YP_103744.1 identified by match to protein family HMM PF02653 YP_103745.1 identified by match to protein family HMM PF00005 YP_103746.1 identified by similarity to SP:P21630; match to protein family HMM PF00005 YP_103747.1 identified by match to protein family HMM PF01774 YP_103748.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_103749.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active YP_103750.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_103751.1 involved in the assembly of the urease metallocenter; possible nickel donor YP_103752.1 identified by similarity to SP:Q07402; match to protein family HMM PF01730 YP_103753.1 identified by similarity to SP:Q07403; match to protein family HMM PF01495; match to protein family HMM TIGR00101 YP_103754.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A YP_103755.1 identified by similarity to GP:15979687 YP_103756.1 identified by similarity to GB:CAC67287.1; match to protein family HMM PF01075 YP_103757.1 identified by similarity to SP:P40391; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_103759.1 identified by match to protein family HMM PF00535 YP_103760.1 identified by match to protein family HMM PF00534 YP_103761.1 identified by similarity to SP:P55180; match to protein family HMM PF01370; match to protein family HMM TIGR01179 YP_103762.1 identified by match to protein family HMM PF00953 YP_103763.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_103764.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_103767.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_103768.1 identified by match to protein family HMM PF00561 YP_103770.1 identified by similarity to GP:13358861; match to protein family HMM PF00301 YP_103772.1 identified by match to protein family HMM PF00005 YP_103773.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_103774.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_103776.1 identified by similarity to OMNI:NTL03PA01045 YP_103777.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_103778.1 identified by similarity to OMNI:NTL01RSA1511; match to protein family HMM PF05232 YP_103780.1 identified by match to protein family HMM PF00083 YP_103781.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_103783.1 identified by similarity to SP:Q48935; match to protein family HMM PF00850 YP_103785.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_103786.1 identified by similarity to SP:Q51520; match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_103787.1 identified by match to protein family HMM PF01042 YP_103788.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_103789.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_103791.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_103792.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_103793.1 identified by similarity to SP:P22563; match to protein family HMM PF00254 YP_103794.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_103795.1 required for 70S ribosome assembly YP_103796.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_103797.1 catalyzes the formation of oxaloacetate from L-aspartate YP_103799.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_103800.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_103801.1 identified by similarity to GP:1055272; match to protein family HMM PF00487 YP_103802.1 identified by match to protein family HMM PF00924 YP_103803.1 identified by match to protein family HMM PF01189 YP_103804.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_103805.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_103806.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_103807.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_103808.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_103809.1 catalyzes the formation of dUMP from dUTP YP_103810.1 identified by similarity to GP:17430429; match to protein family HMM PF03988 YP_103812.1 identified by similarity to OMNI:NTL03PA02079 YP_103813.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_103814.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_103815.1 identified by similarity to OMNI:NTL01RS2494; match to protein family HMM PF02643 YP_103816.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_103820.1 identified by match to protein family HMM PF00248 YP_103821.1 identified by match to protein family HMM PF00392 YP_103822.1 identified by similarity to GP:17743749; match to protein family HMM PF00285 YP_103823.1 identified by match to protein family HMM TIGR00711 YP_103825.1 identified by match to protein family HMM PF00563 YP_103826.1 identified by similarity to GP:17430050 YP_103828.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate YP_103829.1 identified by similarity to OMNI:NTL03PA00277 YP_103830.1 identified by similarity to OMNI:NTL03PA00528; match to protein family HMM PF00027 YP_103831.1 identified by match to protein family HMM PF02417 YP_103832.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_103833.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_103834.1 identified by similarity to SP:P37369; match to protein family HMM PF00081; match to protein family HMM PF02777 YP_103835.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_103836.1 Transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_103837.1 identified by similarity to GP:17429552; match to protein family HMM PF03966 YP_103838.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_103840.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_103841.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_103842.1 identified by similarity to SP:P24245; match to protein family HMM PF00313 YP_103843.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_103844.1 identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861 YP_103845.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_103846.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_103849.1 identified by match to protein family HMM PF00155 YP_103850.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_103851.1 identified by similarity to GP:13446705; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801 YP_103852.1 identified by similarity to SP:Q52938; similarity to GP:13446704 YP_103853.1 identified by similarity to GP:13446703; match to protein family HMM PF00106 YP_103854.1 identified by similarity to GP:13446702; match to protein family HMM PF05159 YP_103855.1 identified by similarity to GP:13446701; similarity to GP:13491146; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 YP_103856.1 identified by similarity to GP:13491145; match to protein family HMM PF00483 YP_103857.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_103858.1 identified by similarity to GP:13491143; match to protein family HMM PF00288 YP_103859.1 identified by similarity to GP:11464870; match to protein family HMM PF01370 YP_103860.1 identified by similarity to GP:13932339 YP_103861.1 identified by similarity to GP:13932337; match to protein family HMM PF00534 YP_103862.1 identified by similarity to GP:13932336 YP_103863.1 identified by similarity to GP:13932334; match to protein family HMM PF00534 YP_103864.1 identified by similarity to SP:P32016; match to protein family HMM PF00005 YP_103865.1 identified by similarity to SP:P19391; match to protein family HMM PF01061 YP_103866.1 identified by similarity to GP:13932330; match to protein family HMM PF02563 YP_103867.1 identified by similarity to OMNI:NTL03PA05450; match to protein family HMM PF00534 YP_103868.1 identified by similarity to GP:13932328; match to protein family HMM PF05159 YP_103869.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479 YP_103870.1 identified by similarity to GP:13932326; match to protein family HMM PF00310 YP_103871.1 identified by match to protein family HMM PF00924 YP_103872.1 identified by similarity to GP:13446681; match to protein family HMM PF00597 YP_103873.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_103874.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_103875.1 identified by similarity to GP:17430124 YP_103876.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_103877.1 identified by similarity to OMNI:NTL01RS2625 YP_103878.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_103879.1 identified by similarity to SP:P13685; match to protein family HMM PF01743 YP_103880.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_103881.1 identified by match to protein family HMM PF01712 YP_103882.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_103883.1 identified by match to protein family HMM PF00425 YP_103884.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_103885.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_103886.1 identified by similarity to GP:17429660 YP_103887.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_103888.1 identified by similarity to SP:P45802; match to protein family HMM PF01479 YP_103889.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_103890.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_103891.1 catalyzes the phosphorylation of NAD to NADP YP_103892.1 identified by match to protein family HMM TIGR00634 YP_103893.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_103894.1 identified by similarity to GP:29542027 YP_103895.1 identified by match to protein family HMM PF00795 YP_103896.1 identified by similarity to SP:P46473; match to protein family HMM PF01523 YP_103898.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_103899.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_103900.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_103901.1 forms a direct contact with the tRNA during translation YP_103902.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_103903.1 identified by match to protein family HMM PF00165 YP_103904.1 identified by similarity to OMNI:NTL03PA01034; match to protein family HMM PF00043; match to protein family HMM PF02798 YP_103905.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_103906.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_103907.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_103908.1 identified by similarity to SP:P36942; match to protein family HMM PF00300 YP_103909.1 identified by similarity to OMNI:NTL03PA04385 YP_103910.1 identified by similarity to GP:17431727 YP_103911.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_103912.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_103913.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_103914.1 involved in de novo purine biosynthesis YP_103915.1 identified by similarity to SP:P11028; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_103916.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_103917.1 identified by similarity to SP:P25534; match to protein family HMM PF01360 YP_103918.1 identified by similarity to SP:P15034; match to protein family HMM PF00557; match to protein family HMM PF05195 YP_103919.1 identified by similarity to SP:P32105; match to protein family HMM PF00043; match to protein family HMM PF02798 YP_103920.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_103921.1 identified by similarity to SP:P39812; match to protein family HMM PF01645 YP_103922.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_103923.1 identified by match to protein family HMM PF00293 YP_103924.1 identified by similarity to SP:Q60164; match to protein family HMM PF01262; match to protein family HMM PF05222 YP_103925.1 identified by similarity to SP:Q59764 YP_103926.1 identified by similarity to SP:P07002; match to protein family HMM PF02233 YP_103928.1 identified by similarity to OMNI:NTL01RS2673 YP_103930.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02926 YP_103931.1 identified by similarity to GP:1923241 YP_103933.1 identified by match to protein family HMM PF03886 YP_103934.1 identified by similarity to SP:P43671 YP_103935.1 identified by similarity to SP:P08732; match to protein family HMM PF01292 YP_103936.1 identified by similarity to GP:17429740; match to protein family HMM PF04264 YP_103937.1 identified by similarity to GP:17429739; match to protein family HMM PF04264 YP_103939.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_103940.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_103941.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_103942.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_103943.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_103944.1 catalyzes branch migration in Holliday junction intermediates YP_103945.1 identified by similarity to GP:16580120; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_103946.1 identified by similarity to SP:O87864; match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_103949.1 identified by match to protein family HMM PF00210 YP_103950.1 identified by match to protein family HMM PF01638 YP_103951.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway YP_103952.1 identified by similarity to SP:P16690 YP_103953.1 identified by similarity to OMNI:NTL01BM1106 YP_103954.1 identified by match to protein family HMM PF00392 YP_103955.1 identified by similarity to SP:P16685 YP_103956.1 identified by similarity to SP:P16686 YP_103957.1 identified by similarity to SP:P16687; match to protein family HMM PF05861 YP_103958.1 identified by similarity to SP:P16688 YP_103959.1 identified by match to protein family HMM PF00005 YP_103961.1 identified by similarity to SP:P16677; match to protein family HMM PF00005 YP_103962.1 identified by similarity to SP:P16683; match to protein family HMM PF00528 YP_103963.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_103964.1 identified by similarity to GP:17429705; match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_103965.1 identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754 YP_103966.1 identified by similarity to SP:P52073; match to protein family HMM PF01565 YP_103967.1 identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913 YP_103968.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_103969.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_103970.1 identified by similarity to SP:P49852; match to protein family HMM PF00042; match to protein family HMM PF00175 YP_103971.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_103973.1 identified by match to protein family HMM PF02566 YP_103974.1 identified by similarity to OMNI:NTL01RS0488 YP_103975.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_103976.1 identified by match to protein family HMM PF00310 YP_103978.1 identified by similarity to GB:AAP85931.1 YP_103979.1 identified by match to protein family HMM PF00011 YP_103981.1 identified by similarity to SP:P28599; match to protein family HMM PF00166 YP_103983.1 identified by similarity to SP:P41076; match to protein family HMM PF00005 YP_103984.1 identified by similarity to SP:P41075; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_103985.1 identified by similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_103986.1 identified by similarity to SP:O74024; match to protein family HMM PF00208; match to protein family HMM PF02812 YP_103987.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_103988.1 identified by similarity to SP:P46907 YP_103989.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_103990.1 identified by similarity to SP:P46859; match to protein family HMM TIGR01313 YP_103991.1 identified by similarity to SP:P12012; match to protein family HMM PF02447; match to protein family HMM TIGR00791 YP_103992.1 identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_103993.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_103994.1 identified by similarity to SP:P46118; match to protein family HMM PF01380; match to protein family HMM PF01418 YP_103996.1 identified by similarity to OMNI:NTL01RS2740; match to protein family HMM PF03653 YP_103997.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_103998.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_104000.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_104001.1 identified by match to protein family HMM PF02472 YP_104002.1 identified by similarity to SP:P05828; match to protein family HMM PF01618 YP_104003.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_104004.1 identified by similarity to SP:O68564; match to protein family HMM PF04355 YP_104005.1 identified by similarity to GP:4336959; match to protein family HMM PF01475 YP_104006.1 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_104007.1 involved in the transport of C4-dicarboxylates across the membrane YP_104008.1 identified by match to protein family HMM PF00392 YP_104010.1 controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source YP_104011.1 identified by similarity to SP:P17582; match to protein family HMM PF00484 YP_104012.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide YP_104014.1 identified by similarity to SP:P50322; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_104015.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_104016.2 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_104017.1 identified by similarity to GP:17429784; match to protein family HMM PF00903 YP_104018.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_104019.1 identified by similarity to GP:12620746 YP_104020.1 identified by similarity to SP:P11540; match to protein family HMM PF01337 YP_104022.1 identified by similarity to SP:P30289; match to protein family HMM PF00545 YP_104023.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_104024.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_104025.1 identified by similarity to SP:P18200; match to protein family HMM PF04608 YP_104026.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_104027.1 OMP decarboxylase; OMPDCase; OMPdecase; type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_104028.1 identified by similarity to OMNI:NTL01RS2754; match to protein family HMM PF01263 YP_104029.1 identified by similarity to SP:P50198; match to protein family HMM PF00106 YP_104030.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_104031.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_104032.1 identified by similarity to SP:P02924; match to protein family HMM PF00532; match to protein family HMM TIGR01409 YP_104033.1 identified by match to protein family HMM PF00106 YP_104034.2 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism YP_104035.1 identified by similarity to SP:P31459; match to protein family HMM PF05035 YP_104036.1 identified by match to protein family HMM PF01614 YP_104038.1 identified by match to protein family HMM PF00450 YP_104039.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_104040.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_104041.1 identified by similarity to SP:P30850 YP_104042.1 identified by similarity to GP:17429803; match to protein family HMM PF05728 YP_104043.1 identified by similarity to SP:P37773; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01081 YP_104044.1 identified by similarity to GP:17429805 YP_104045.1 identified by similarity to SP:P35160 YP_104046.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_104047.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_104048.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_104049.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_104050.1 identified by similarity to OMNI:NTL01RS2789 YP_104051.1 identified by similarity to SP:P37901; match to protein family HMM PF00578 YP_104052.1 identified by similarity to SP:P36945; match to protein family HMM PF00294 YP_104053.1 identified by similarity to SP:P31484 YP_104055.1 Catalyzes the rate-limiting step in dNTP synthesis YP_104056.1 Catalyzes the rate-limiting step in dNTP synthesis YP_104057.1 identified by similarity to SP:P13016; match to protein family HMM PF01510 YP_104058.1 identified by similarity to GP:17429832 YP_104059.1 identified by match to protein family HMM PF01578 YP_104060.1 identified by similarity to SP:P07019; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_104061.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively YP_104062.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_104063.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_104064.1 hydrolyzes diadenosine polyphosphate YP_104065.1 identified by similarity to GP:17429841 YP_104066.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_104067.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_104068.1 involved in the peptidyltransferase reaction during translation YP_104069.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_104070.1 identified by similarity to SP:P19641; match to protein family HMM PF00348 YP_104072.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104073.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104074.1 identified by similarity to GP:17429847; match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_104075.1 identified by similarity to SP:P45792; match to protein family HMM PF00437 YP_104076.1 identified by similarity to GP:151066; match to protein family HMM PF00482 YP_104077.1 identified by similarity to SP:P22610; match to protein family HMM PF01478; match to protein family HMM PF06750 YP_104078.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_104079.1 identified by similarity to GP:17429852 YP_104080.1 identified by match to protein family HMM PF00293 YP_104081.1 identified by similarity to GP:17429855; match to protein family HMM PF05673 YP_104082.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_104083.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_104085.1 identified by similarity to GP:17429859 YP_104086.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_104087.1 identified by similarity to GP:19548660; match to protein family HMM PF00578 YP_104088.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_104090.1 identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_104091.1 identified by similarity to SP:P06136; match to protein family HMM PF03799 YP_104092.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_104093.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_104094.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_104095.1 identified by similarity to SP:P16457; match to protein family HMM PF01098 YP_104096.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_104097.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_104098.1 identified by similarity to SP:P11880; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_104099.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_104100.1 identified by similarity to SP:P04286; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_104101.1 identified by match to protein family HMM PF04999 YP_104102.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_104103.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_104104.1 identified by similarity to OMNI:NTL01RS2854 YP_104105.1 identified by match to protein family HMM PF00267 YP_104106.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_104107.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104108.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104109.1 identified by match to protein family HMM PF00657 YP_104111.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA YP_104112.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation YP_104113.1 identified by similarity to SP:P76079; match to protein family HMM PF05138 YP_104114.1 identified by similarity to SP:P76080; match to protein family HMM PF01883 YP_104115.1 identified by similarity to GP:11072193; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_104116.1 identified by similarity to GP:17430118 YP_104117.1 identified by match to protein family HMM PF00440 YP_104118.1 identified by match to protein family HMM PF00583 YP_104119.1 identified by similarity to SP:P37403; match to protein family HMM PF01037 YP_104120.1 identified by similarity to SP:P80064; match to protein family HMM PF00903; match to protein family HMM TIGR01263 YP_104122.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_104124.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_104125.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_104126.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_104127.1 identified by similarity to SP:P30849; match to protein family HMM PF00258 YP_104128.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_104130.1 identified by similarity to SP:Q00595; match to protein family HMM PF03922 YP_104131.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104132.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104133.1 identified by match to protein family HMM PF01578 YP_104134.1 identified by similarity to SP:P43302; match to protein family HMM PF00034 YP_104135.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_104136.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_104137.1 identified by similarity to SP:P36655; match to protein family HMM PF02683 YP_104138.1 identified by similarity to SP:P36654; match to protein family HMM PF03091 YP_104139.1 is a component of the macrolide binding site in the peptidyl transferase center YP_104140.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_104141.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_104142.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_104143.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_104144.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_104145.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_104146.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_104147.1 late assembly protein YP_104148.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_104149.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_104150.1 binds 5S rRNA along with protein L5 and L25 YP_104151.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_104152.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_104153.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_104154.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_104155.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_104156.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_104157.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_104158.1 one of the stabilizing components for the large ribosomal subunit YP_104159.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_104160.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_104161.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_104162.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_104163.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_104164.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_104165.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_104166.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_104167.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_104168.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_104169.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_104170.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_104171.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_104172.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_104173.1 identified by similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_104174.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_104175.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_104176.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_104177.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_104178.1 binds directly to 23S ribosomal RNA YP_104179.1 Modulates Rho-dependent transcription termination YP_104180.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_104181.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_104182.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104183.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104185.1 identified by similarity to OMNI:CC3409 YP_104186.1 identified by match to protein family HMM PF03551 YP_104187.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_104188.1 identified by match to protein family HMM PF00106 YP_104189.1 identified by similarity to SP:P54796 YP_104190.1 identified by similarity to SP:P80668; match to protein family HMM PF00171 YP_104193.1 identified by match to protein family HMM PF02653 YP_104194.1 identified by similarity to OMNI:BRA1175; match to protein family HMM PF00005 YP_104195.1 identified by similarity to SP:P21630; match to protein family HMM PF00005 YP_104196.1 identified by match to protein family HMM PF00165 YP_104197.1 identified by similarity to SP:Q04064 YP_104199.1 identified by similarity to SP:P08764; match to protein family HMM PF04851 YP_104200.1 identified by match to protein family HMM PF01555 YP_104202.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_104203.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_104204.1 identified by match to protein family HMM PF00528 YP_104205.1 identified by match to protein family HMM PF00005 YP_104206.1 identified by similarity to OMNI:NTL02ML6262 YP_104207.1 identified by match to protein family HMM PF00376 YP_104208.1 identified by similarity to SP:P33135; match to protein family HMM PF01311; match to protein family HMM TIGR01400 YP_104209.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus YP_104210.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_104211.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104212.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104213.1 identified by similarity to GP:9108008 YP_104214.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540 YP_104215.1 identified by similarity to SP:P25663; match to protein family HMM PF04386 YP_104216.1 identified by similarity to SP:P05838; match to protein family HMM PF02798 YP_104217.1 identified by similarity to SP:P23135; match to protein family HMM PF02167 YP_104218.1 identified by similarity to SP:P23134; match to protein family HMM PF00033 YP_104219.1 identified by similarity to GP:46384; match to protein family HMM PF00355; match to protein family HMM TIGR01416 YP_104220.1 identified by similarity to SP:Q8XVA0; match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_104221.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_104222.1 identified by similarity to SP:P27857; match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_104223.1 identified by similarity to GP:12831975; match to protein family HMM PF02416; match to protein family HMM TIGR01410 YP_104224.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_104225.1 identified by match to protein family HMM PF01230 YP_104226.1 identified by similarity to GP:17429966 YP_104227.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_104228.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_104229.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_104230.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_104231.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_104232.1 identified by similarity to GP:17429972; match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_104233.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_104234.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_104235.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_104236.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_104237.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_104238.1 identified by similarity to SP:P73055; match to protein family HMM PF01722 YP_104239.1 identified by match to protein family HMM PF01061 YP_104240.1 identified by match to protein family HMM PF00005 YP_104242.1 identified by similarity to GB:CAD16664.1 YP_104243.1 identified by similarity to SP:P43262; match to protein family HMM PF04333 YP_104244.1 identified by match to protein family HMM PF02470 YP_104245.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_104246.1 identified by match to protein family HMM PF00005 YP_104247.1 identified by similarity to SP:P30137; match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_104248.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_104249.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate YP_104250.1 identified by match to protein family HMM PF01266 YP_104251.1 identified by match to protein family HMM PF00005 YP_104253.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_104255.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_104256.1 identified by similarity to SP:P39812; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898; match to protein family HMM TIGR01612 YP_104257.1 identified by similarity to OMNI:CC1445 YP_104258.1 identified by match to protein family HMM PF03922 YP_104259.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate YP_104260.1 part of the UgpABCE glycerol-3-phosphate uptake system YP_104261.1 with UgpABC is involved in uptake of glycerol-3-phosphate YP_104262.1 with UgpACE is involved in the uptake of glycerol-3-phosphate YP_104263.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_104264.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_104265.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_104266.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958 YP_104268.1 identified by match to protein family HMM PF05137 YP_104270.1 identified by similarity to GP:1914832; match to protein family HMM PF00905; match to protein family HMM PF00912 YP_104271.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_104272.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly YP_104273.1 identified by similarity to OMNI:VC0124 YP_104274.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_104275.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_104276.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_104277.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104278.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104279.1 This gene is disrupted by a 65 kb insertion that is flanked by IS407 elements.identified by similarity to SP:P33133 YP_104280.1 identified by similarity to SP:P22586; match to protein family HMM PF04347 YP_104281.1 identified by similarity to SP:P15070; match to protein family HMM PF01052 YP_104282.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_104283.2 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_104285.1 identified by similarity to OMNI:VC2100; match to protein family HMM PF04172 YP_104286.1 identified by match to protein family HMM PF03788 YP_104287.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_104288.1 identified by match to protein family HMM PF00083; match to protein family HMM TIGR00711 YP_104289.1 identified by match to protein family HMM PF01047 YP_104291.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_104292.1 identified by similarity to GP:4139247 YP_104293.1 identified by similarity to GP:4139246; match to protein family HMM PF04612 YP_104294.1 identified by similarity to GP:4139245 YP_104295.1 identified by similarity to GP:4139244; match to protein family HMM PF03934 YP_104296.1 identified by similarity to GP:4139243 YP_104297.1 identified by similarity to GP:4139242 YP_104298.1 identified by similarity to GP:4139241 YP_104299.1 identified by similarity to GP:4139240 YP_104301.1 identified by similarity to GP:4139239 YP_104302.1 identified by similarity to GP:4139238; match to protein family HMM PF00482 YP_104303.1 identified by similarity to GP:4139237; match to protein family HMM PF00437 YP_104304.1 identified by similarity to GP:4139236; match to protein family HMM PF00263; match to protein family HMM PF03958 YP_104305.1 identified by similarity to SP:Q07568; match to protein family HMM PF01464 YP_104307.1 identified by match to protein family HMM PF02492 YP_104308.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_104309.1 identified by similarity to SP:P24245; match to protein family HMM PF00313 YP_104310.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104311.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104313.1 identified by match to protein family HMM PF00324 YP_104314.1 identified by similarity to SP:P95339; match to protein family HMM PF00034 YP_104315.1 identified by match to protein family HMM PF04972 YP_104316.1 identified by match to protein family HMM PF01380; match to protein family HMM TIGR00441 YP_104317.1 identified by similarity to GP:15981471; match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_104318.1 identified by similarity to GP:17430289; match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_104319.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_104320.1 identified by similarity to SP:P36928 YP_104321.1 identified by match to protein family HMM PF00881 YP_104323.1 identified by match to protein family HMM PF00440 YP_104325.1 identified by similarity to OMNI:NTL01XA3626 YP_104326.1 identified by similarity to GP:15022979 YP_104327.1 identified by similarity to GP:17430184 YP_104329.1 identified by match to protein family HMM PF01757 YP_104331.1 identified by similarity to OMNI:NTL03PA00128 YP_104333.1 identified by match to protein family HMM PF01433 YP_104334.1 identified by similarity to SP:Q9EXN6 YP_104335.1 identified by similarity to SP:Q9EXN5; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412 YP_104336.1 identified by similarity to SP:P11092; match to protein family HMM PF02321 YP_104338.1 identified by similarity to OMNI:NTL01RSA0766 YP_104340.1 identified by similarity to GP:17431234 YP_104341.1 identified by match to protein family HMM PF00691 YP_104342.1 identified by similarity to OMNI:NTL03PA02360 YP_104343.1 identified by similarity to SP:Q9RA63; match to protein family HMM PF00004; match to protein family HMM PF02861 YP_104344.1 identified by similarity to GP:17431219 YP_104345.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104346.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104347.1 identified by match to protein family HMM PF03060 YP_104349.1 identified by similarity to SP:P11453; match to protein family HMM PF01738 YP_104350.1 identified by similarity to SP:P13397; match to protein family HMM PF01425 YP_104351.1 identified by similarity to SP:P00394; match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_104352.1 identified by similarity to GP:17427100; match to protein family HMM PF04020 YP_104353.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_104354.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes YP_104355.1 identified by similarity to GP:6952812 YP_104356.1 positive regulator of class III flagellar genes YP_104357.1 membrane protein involved in the flagellar export apparatus YP_104358.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_104359.1 identified by similarity to GP:4835313 YP_104361.1 identified by similarity to GB:AAQ60745.1 YP_104362.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation YP_104363.1 identified by similarity to SP:P06143; match to protein family HMM PF00072 YP_104365.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_104366.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_104367.1 identified by similarity to SP:P07364; match to protein family HMM PF01739; match to protein family HMM PF03705 YP_104368.1 identified by similarity to SP:P02942; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_104369.1 identified by similarity to SP:P07365; match to protein family HMM PF01584 YP_104370.1 identified by similarity to SP:P07363; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 YP_104371.1 identified by similarity to OMNI:CC0432; match to protein family HMM PF00072 YP_104372.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_104373.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems YP_104374.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems YP_104376.1 identified by match to protein family HMM PF00534 YP_104377.1 identified by match to protein family HMM PF00816 YP_104378.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure YP_104379.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_104380.1 identified by similarity to OMNI:NTL02ML5720; match to protein family HMM PF01869 YP_104381.1 identified by similarity to SP:P05100; match to protein family HMM PF03352 YP_104382.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_104383.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus YP_104384.1 identified by similarity to SP:P24216; match to protein family HMM PF02465 YP_104386.1 identified by match to protein family HMM PF00515 YP_104387.1 identified by match to protein family HMM PF01041 YP_104388.1 identified by similarity to SP:P24249 YP_104390.1 identified by similarity to SP:P30790 YP_104391.1 identified by match to protein family HMM PF00106 YP_104392.1 identified by match to protein family HMM PF00132 YP_104395.1 identified by match to protein family HMM PF01810 YP_104397.1 identified by similarity to GP:8572766; match to protein family HMM PF04185; match to protein family HMM TIGR01409 YP_104398.1 identified by match to protein family HMM PF05643 YP_104399.1 identified by similarity to SP:O54291; match to protein family HMM PF03783 YP_104400.1 identified by match to protein family HMM PF00561 YP_104401.1 identified by similarity to SP:P02942; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_104402.1 identified by match to protein family HMM PF01565 YP_104403.1 identified by similarity to GP:3308998; match to protein family HMM PF03067 YP_104405.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104406.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104408.1 identified by match to protein family HMM PF01094 YP_104410.1 identified by similarity to GP:9950618 YP_104412.1 identified by match to protein family HMM PF00816 YP_104413.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_104414.1 identified by match to protein family HMM PF01037 YP_104415.1 identified by similarity to OMNI:NTL01RS3267 YP_104416.1 identified by match to protein family HMM PF00753 YP_104418.1 identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413 YP_104419.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_104420.1 identified by similarity to GP:14028717; match to protein family HMM PF00216 YP_104421.2 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules YP_104423.1 identified by match to protein family HMM PF00999 YP_104424.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity YP_104425.1 identified by match to protein family HMM PF01047 YP_104426.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_104427.1 identified by similarity to GP:6049281; match to protein family HMM PF00724 YP_104428.1 identified by match to protein family HMM PF00856 YP_104430.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_104431.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_104432.1 identified by similarity to GP:17430380 YP_104433.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_104434.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_104435.1 identified by match to protein family HMM PF01037 YP_104436.1 identified by match to protein family HMM PF01928 YP_104437.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_104438.1 identified by similarity to GP:1041092; match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_104440.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_104441.1 identified by similarity to SP:P21629; match to protein family HMM PF00005 YP_104443.1 identified by match to protein family HMM PF02653 YP_104445.1 identified by match to protein family HMM PF01094 YP_104446.1 identified by similarity to SP:P21627; match to protein family HMM PF02653 YP_104447.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02653 YP_104448.1 identified by similarity to SP:P21630; match to protein family HMM PF00005 YP_104449.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_104450.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_104451.1 identified by similarity to SP:P37522; match to protein family HMM PF00991 YP_104452.1 identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_104455.1 identified by similarity to SP:P25760 YP_104456.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_104457.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_104458.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_104459.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_104460.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_104461.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_104462.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_104463.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_104464.1 activates fatty acids by binding to coenzyme A YP_104465.1 identified by similarity to SP:Q01269; match to protein family HMM PF00497 YP_104466.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_104467.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_104469.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein YP_104470.1 identified by match to protein family HMM PF01094 YP_104471.1 identified by similarity to GP:11595497; match to protein family HMM PF00501 YP_104472.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_104473.1 identified by match to protein family HMM PF00440 YP_104475.1 catalyzes the transfer of an amino moiety YP_104476.1 identified by similarity to SP:P02911; match to protein family HMM PF00497 YP_104477.1 identified by match to protein family HMM PF03551 YP_104478.1 identified by similarity to GP:13898625; match to protein family HMM PF00376 YP_104479.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_104481.1 identified by similarity to GP:17431746 YP_104482.1 identified by match to protein family HMM PF01757 YP_104484.1 identified by match to protein family HMM PF00324 YP_104485.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_104486.1 identified by similarity to SP:P19635; match to protein family HMM PF06751 YP_104487.1 catalyzes the formation of acetaldehyde from ethanolamine YP_104489.1 identified by similarity to SP:P46368; match to protein family HMM PF00171 YP_104490.1 identified by match to protein family HMM PF00165 YP_104492.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit YP_104493.1 identified by similarity to GB:AAK77145.1 YP_104494.1 identified by similarity to SP:P16095; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_104496.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_104497.1 identified by similarity to SP:P23884; match to protein family HMM PF01597; match to protein family HMM TIGR00527 YP_104498.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_104499.1 identified by similarity to GP:17133749 YP_104500.1 identified by similarity to GP:17428602 YP_104501.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_104503.1 identified by similarity to OMNI:NTL03PA03750; match to protein family HMM PF00657 YP_104505.1 identified by match to protein family HMM PF00580 YP_104506.1 identified by match to protein family HMM PF00034 YP_104507.1 identified by match to protein family HMM PF00589 YP_104508.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104509.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104510.1 The C-terminal codons of this ORF are contributed by the left inverted repeat of IS407. YP_104512.1 identified by similarity to SP:P31677; match to protein family HMM PF00982 YP_104513.1 identified by similarity to OMNI:NTL02ML1157 YP_104515.1 identified by similarity to SP:P76269 YP_104516.1 identified by similarity to SP:P77368; match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_104521.1 serine protease inhibitor, inhibits trypsin and other proteases YP_104522.1 identified by match to protein family HMM PF00768 YP_104524.1 identified by similarity to OMNI:NTL02YP1353 YP_104525.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104526.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104527.1 identified by similarity to OMNI:NTL01XA1958 YP_104528.1 identified by similarity to OMNI:NTL01RSA0795 YP_104529.1 identified by match to protein family HMM PF00698 YP_104530.1 identified by match to protein family HMM PF01874 YP_104531.1 catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein YP_104532.1 identified by similarity to GP:2804624 YP_104533.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A YP_104534.1 acyl carrier protein of malonate decarboxylase YP_104535.1 identified by similarity to GP:2804621 YP_104536.1 identified by similarity to GP:4062981 YP_104538.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_104539.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_104540.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_104542.1 identified by similarity to OMNI:NTL03ST1639; match to protein family HMM PF03860 YP_104544.1 identified by match to protein family HMM PF00011 YP_104545.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_104547.1 identified by similarity to GP:2565334; match to protein family HMM PF01077; match to protein family HMM PF03460 YP_104548.1 identified by similarity to OMNI:NTL03PA01838 YP_104549.1 identified by similarity to OMNI:NTL03PA02918; match to protein family HMM PF00106 YP_104550.1 identified by similarity to OMNI:NTL03PA03765 YP_104551.1 identified by similarity to GP:13876587; match to protein family HMM PF03055 YP_104552.1 identified by similarity to SP:P17169; match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_104553.1 identified by match to protein family HMM PF01037 YP_104554.1 identified by match to protein family HMM PF00392 YP_104555.1 identified by match to protein family HMM PF04299 YP_104556.1 identified by similarity to GP:17431182 YP_104557.1 identified by similarity to GP:17431183 YP_104559.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_104561.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_104562.1 identified by match to protein family HMM PF01547 YP_104563.1 identified by match to protein family HMM PF00528 YP_104565.1 identified by match to protein family HMM PF00528 YP_104566.1 identified by match to protein family HMM PF00005 YP_104567.1 identified by match to protein family HMM PF00149 YP_104569.1 identified by similarity to GP:17430582 YP_104570.1 identified by similarity to OMNI:NTL02ML3432; match to protein family HMM PF03988 YP_104572.1 identified by match to protein family HMM PF00083 YP_104573.1 identified by similarity to SP:P09185; match to protein family HMM PF00892 YP_104575.1 identified by match to protein family HMM PF00174 YP_104576.1 identified by similarity to GP:17427630 YP_104577.1 identified by similarity to OMNI:NTL01RS1589 YP_104578.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_104579.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104580.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104581.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_104582.1 identified by match to protein family HMM PF00083 YP_104583.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_104584.1 identified by similarity to OMNI:PP4850 YP_104585.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_104586.1 identified by similarity to SP:P41888; match to protein family HMM PF00293 YP_104587.1 identified by match to protein family HMM PF01810 YP_104588.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254 YP_104589.1 identified by similarity to SP:P42502; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_104590.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670 YP_104591.1 identified by similarity to OMNI:NTL01RS0411 YP_104592.1 identified by match to protein family HMM PF00005 YP_104593.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_104594.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_104595.1 identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419 YP_104596.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_104597.1 identified by similarity to GP:17427413; match to protein family HMM PF03668 YP_104598.1 identified by similarity to OMNI:NTL01XC3240; match to protein family HMM PF02190 YP_104599.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_104600.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_104601.1 identified by match to protein family HMM PF00515 YP_104602.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein YP_104603.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_104604.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_104605.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_104606.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_104607.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_104608.1 identified by similarity to GP:1518927; match to protein family HMM PF00037 YP_104609.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_104610.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_104611.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_104612.1 identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262 YP_104614.1 identified by similarity to SP:P42435; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324 YP_104615.1 identified by similarity to SP:P42436; match to protein family HMM PF00355 YP_104616.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879 YP_104617.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885 YP_104618.1 identified by match to protein family HMM PF00583 YP_104619.1 identified by similarity to SP:P42455; match to protein family HMM PF00682; match to protein family HMM TIGR00970 YP_104620.1 identified by similarity to GP:17431675 YP_104622.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_104623.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_104624.1 identified by match to protein family HMM PF04392 YP_104625.1 identified by match to protein family HMM PF02653 YP_104626.1 identified by match to protein family HMM PF00005 YP_104627.1 identified by similarity to GP:17431269 YP_104628.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase. YP_104629.1 identified by similarity to OMNI:NTL03PA05221 YP_104630.1 identified by match to protein family HMM PF00083 YP_104631.1 identified by match to protein family HMM PF00487 YP_104632.1 identified by similarity to SP:P44951; match to protein family HMM PF00202; match to protein family HMM TIGR00709 YP_104635.1 identified by match to protein family HMM PF00005 YP_104636.1 identified by similarity to GP:1890776 YP_104637.1 identified by similarity to GP:7649527 YP_104639.1 identified by match to protein family HMM PF00441 YP_104641.1 identified by match to protein family HMM PF00501 YP_104642.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_104645.1 identified by match to protein family HMM PF00501 YP_104646.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_104647.1 identified by match to protein family HMM PF00392 YP_104648.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_104649.1 identified by match to protein family HMM PF01380 YP_104650.1 identified by similarity to SP:P08838; match to protein family HMM PF00358; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR00830; match to protein family HMM TIGR01417 YP_104651.1 identified by similarity to SP:P09323; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998 YP_104652.1 identified by similarity to SP:Q54468; match to protein family HMM PF00728; match to protein family HMM PF02838; match to protein family HMM PF03173 YP_104655.1 identified by similarity to OMNI:VC1842 YP_104656.1 identified by similarity to SP:P11027; match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_104657.1 identified by similarity to SP:Q09049; match to protein family HMM PF01654 YP_104659.1 identified by similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_104660.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_104661.1 identified by similarity to SP:P28635; match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_104662.1 identified by similarity to SP:P02942; match to protein family HMM PF00015 YP_104664.1 identified by similarity to GP:4584472; match to protein family HMM PF03795 YP_104665.1 identified by match to protein family HMM PF02630 YP_104666.1 converts protoheme IX and farnesyl diphosphate to heme O YP_104667.1 identified by match to protein family HMM PF02628 YP_104668.1 identified by similarity to GP:17427379 YP_104670.1 identified by match to protein family HMM PF00510 YP_104671.1 identified by similarity to GP:17427375 YP_104672.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_104673.1 identified by similarity to SP:P98002; match to protein family HMM PF00115 YP_104674.1 identified by similarity to SP:P08306; match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF00691; match to protein family HMM PF02790 YP_104675.1 identified by similarity to GP:17427370 YP_104677.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_104679.1 identified by similarity to SP:Q8KAE4; match to protein family HMM PF01661 YP_104680.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_104681.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_104682.1 identified by match to protein family HMM PF00462 YP_104683.1 identified by match to protein family HMM PF00581 YP_104684.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_104685.1 identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_104686.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase YP_104687.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_104688.1 identified by similarity to SP:P23537; match to protein family HMM PF00381 YP_104689.1 identified by match to protein family HMM PF03610 YP_104690.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_104692.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_104693.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_104694.1 identified by similarity to GP:11761785; match to protein family HMM PF00543 YP_104695.1 identified by similarity to OMNI:NTL01RS0340 YP_104696.1 identified by similarity to SP:P57015; match to protein family HMM PF01078; match to protein family HMM TIGR00368 YP_104698.1 identified by match to protein family HMM PF00583 YP_104699.1 identified by match to protein family HMM PF00975 YP_104700.1 identified by similarity to GP:17427344 YP_104701.1 identified by similarity to OMNI:NTL01NM00458 YP_104702.1 identified by similarity to SP:P13632; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_104703.1 involved in the transport of C4-dicarboxylates across the membrane YP_104704.2 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake YP_104705.1 identified by similarity to GP:12698387; match to protein family HMM PF04341 YP_104706.1 identified by match to protein family HMM PF02515 YP_104707.1 identified by match to protein family HMM PF00441 YP_104708.1 Marked because it is not clear whether or not this gene encodes activity for 3-hydroxybutyryl-CoA epimerase.identified by similarity to GP:206069; match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_104709.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199 YP_104711.1 identified by similarity to SP:P18956; match to protein family HMM PF01019; match to protein family HMM TIGR00066 YP_104712.1 identified by similarity to OMNI:NTL01SMA00019 YP_104713.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_104714.1 identified by similarity to SP:P75691; match to protein family HMM PF00107 YP_104715.1 identified by similarity to GP:9930476; similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_104716.1 identified by match to protein family HMM PF00165 YP_104717.1 identified by similarity to OMNI:NTL01RS0153; match to protein family HMM PF01435 YP_104718.1 identified by similarity to SP:P24326 YP_104719.1 identified by similarity to GP:13540422 YP_104720.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_104721.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_104722.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01993 YP_104723.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_104725.1 identified by similarity to OMNI:CC1768; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_104726.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_104727.1 heat shock protein involved in degradation of misfolded proteins YP_104728.1 heat shock protein involved in degradation of misfolded proteins YP_104729.1 identified by similarity to SP:P18274; match to protein family HMM PF01258 YP_104730.1 identified by match to protein family HMM PF02492 YP_104731.1 identified by similarity to GP:17427059 YP_104732.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_104733.1 identified by similarity to OMNI:NTL01RS0053 YP_104734.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_104735.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_104736.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_104738.1 identified by similarity to OMNI:NTL01RSA0209; match to protein family HMM PF05721 YP_104740.1 identified by match to protein family HMM PF00248 YP_104741.1 identified by similarity to OMNI:NTL03PA02712; match to protein family HMM PF00892 YP_104742.1 identified by match to protein family HMM PF00083 YP_104744.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_104745.1 identified by similarity to OMNI:NTL01RSA0823 YP_104746.1 identified by similarity to GP:6740923; match to protein family HMM PF00171 YP_104747.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_104748.1 identified by similarity to SP:P52614; match to protein family HMM PF02120 YP_104749.1 identified by similarity to SP:P52613; match to protein family HMM PF02050 YP_104750.1 identified by similarity to SP:P52612; match to protein family HMM PF00006; match to protein family HMM TIGR01026 YP_104751.2 binds to and inhibits the function of flagella specific ATPase FliI YP_104752.1 One of three proteins involved in switching the direction of the flagellar rotation YP_104753.2 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_104754.1 identified by similarity to SP:P25797; match to protein family HMM PF02049; match to protein family HMM TIGR00205 YP_104755.1 identified by similarity to SP:P26608; match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_104756.1 identified by similarity to GP:17429920 YP_104758.1 identified by similarity to SP:P40727 YP_104759.1 identified by similarity to OMNI:VC0283 YP_104760.1 identified by similarity to OMNI:NTL01RS1463; match to protein family HMM PF02625 YP_104761.1 identified by match to protein family HMM PF00324 YP_104762.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_104763.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_104765.1 identified by similarity to SP:P27846; match to protein family HMM PF01810 YP_104766.1 identified by similarity to OMNI:NTL03PA02156 YP_104768.1 identified by similarity to SP:P37945; match to protein family HMM PF00004 YP_104769.1 identified by similarity to SP:P37339; match to protein family HMM PF01266 YP_104770.1 identified by similarity to SP:P00260; match to protein family HMM PF01355 YP_104771.1 identified by match to protein family HMM PF00083 YP_104773.1 identified by similarity to SP:P23847; match to protein family HMM PF00496 YP_104774.1 identified by similarity to SP:P37316; match to protein family HMM PF00528 YP_104775.1 identified by similarity to SP:P37314; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_104776.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides YP_104777.1 identified by match to protein family HMM PF07446 YP_104778.1 identified by similarity to GP:17429186 YP_104779.1 identified by match to protein family HMM PF03746 YP_104780.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_104781.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370 YP_104782.1 identified by similarity to GP:17428738 YP_104783.1 identified by match to protein family HMM PF01812 YP_104784.1 identified by similarity to SP:P03810; match to protein family HMM PF01464 YP_104786.1 identified by match to protein family HMM PF02798 YP_104787.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases YP_104789.1 identified by similarity to GB:AAA73409.1 YP_104791.1 identified by similarity to SP:Q56854; match to protein family HMM PF05130 YP_104792.1 identified by similarity to SP:P43532 YP_104793.2 required for the assembly of the flagellar basal body P-ring YP_104795.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_104796.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_104797.2 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production YP_104798.1 the hook connects flagellar basal body to the flagellar filament YP_104799.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod YP_104800.1 makes up the distal portion of the flagellar basal body rod YP_104801.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Burkholderia thailandensis has 2 copies of this and other flagella genes YP_104802.2 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_104803.2 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space YP_104804.1 identified by similarity to SP:P76010 YP_104805.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_104806.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes. YP_104807.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_104810.1 identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686 YP_104811.1 identified by similarity to GP:19915129 YP_104812.1 identified by match to protein family HMM PF00267 YP_104815.1 identified by similarity to SP:Q16739; match to protein family HMM PF00535 YP_104816.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104817.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104818.1 This gene is disrupted by an IS407 element. The C-terminal codons of this gene are contributed by the left inverted repeat of IS407.identified by Glimmer2 YP_104819.1 identified by similarity to SP:Q51485; match to protein family HMM PF04966 YP_104821.1 identified by match to protein family HMM PF01566 YP_104822.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_104823.1 identified by similarity to SP:P23189; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM TIGR01424 YP_104824.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_104826.1 identified by similarity to GB:AAM38970.1 YP_104827.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_104828.1 identified by match to protein family HMM PF04011 YP_104829.1 identified by match to protein family HMM PF04536 YP_104830.1 identified by similarity to GP:17427673 YP_104832.1 identified by match to protein family HMM PF02321 YP_104833.1 identified by match to protein family HMM TIGR01730 YP_104834.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_104835.1 identified by similarity to GP:17431401 YP_104836.1 identified by similarity to SP:Q53533 YP_104837.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_104838.1 identified by similarity to SP:P17114; match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173 YP_104839.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_104840.1 identified by match to protein family HMM TIGR00526 YP_104841.1 identified by similarity to GP:17427164 YP_104842.1 identified by similarity to GP:17427163; match to protein family HMM PF02636 YP_104844.1 identified by similarity to GP:2293420; match to protein family HMM PF00294 YP_104845.1 identified by similarity to OMNI:NTL01XF01612 YP_104846.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_104847.1 identified by similarity to SP:P02942; match to protein family HMM PF00015 YP_104848.1 identified by match to protein family HMM PF01758 YP_104850.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104851.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104852.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_104854.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_104855.1 identified by similarity to OMNI:NTL01RS0003; match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_104856.1 identified by similarity to SP:P25814; match to protein family HMM PF00825; match to protein family HMM TIGR00188 YP_104857.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_104859.1 identified by match to protein family HMM PF00589 YP_104861.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_104862.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_104863.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_104864.1 identified by match to protein family HMM PF04264 YP_104865.1 identified by match to protein family HMM PF00440 YP_104866.1 identified by match to protein family HMM PF07080 YP_104867.1 identified by match to protein family HMM PF04952 YP_104868.1 identified by similarity to SP:Q51945; match to protein family HMM PF00180; match to protein family HMM TIGR02089 YP_104869.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_104870.1 identified by match to protein family HMM PF04140 YP_104871.1 identified by similarity to GP:3891593; match to protein family HMM PF00043; match to protein family HMM PF02798 YP_104873.1 identified by match to protein family HMM PF01734 YP_104874.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_104875.1 converts acetoacetate to acetone and carbon dioxide YP_104876.1 identified by match to protein family HMM PF01569 YP_104878.1 identified by match to protein family HMM PF04954; match to protein family HMM PF08021 YP_104879.1 identified by match to protein family HMM PF03551 YP_104880.1 identified by similarity to SP:P77901; match to protein family HMM PF00067 YP_104884.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055 YP_104886.1 identified by match to protein family HMM PF01810 YP_104887.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_104888.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_104889.1 identified by match to protein family HMM PF00582 YP_104892.1 identified by match to protein family HMM PF00171 YP_104893.1 identified by similarity to SP:Q01578; match to protein family HMM PF03758 YP_104896.1 identified by similarity to SP:Q59967; match to protein family HMM PF00132 YP_104897.1 identified by match to protein family HMM PF00106 YP_104898.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_104899.1 identified by similarity to SP:P10183; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_104900.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_104901.1 identified by similarity to SP:Q01103; match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_104902.1 identified by similarity to SP:Q01104; match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_104903.1 Catalyzes the cycloisomerization of cis,cis-muconate YP_104904.1 identified by similarity to SP:Q51955; match to protein family HMM PF00083; match to protein family HMM PF07690 YP_104906.1 identified by match to protein family HMM PF01810 YP_104907.1 identified by similarity to GP:19070041; match to protein family HMM PF07690 YP_104908.1 identified by similarity to SP:P17552 YP_104909.1 identified by similarity to SP:P17552 YP_338297.1 identified by similarity to GB:BAB51265.1 YP_104913.1 member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_104914.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_104917.1 identified by similarity to GP:2213665; match to protein family HMM PF00816 YP_104918.1 identified by similarity to SP:P17448; match to protein family HMM PF00083; match to protein family HMM PF07690 YP_104919.1 identified by similarity to SP:P13632; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_104922.1 identified by similarity to GP:17132831 YP_104923.1 identified by match to protein family HMM PF00165 YP_104924.1 identified by similarity to SP:P15713; match to protein family HMM PF04185; match to protein family HMM PF05506 YP_104926.1 identified by similarity to GP:17430676 YP_104927.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104928.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_338304.1 This gene is disrupted by an IS407 element YP_104929.1 identified by similarity to SP:Q45409; match to protein family HMM PF02706 YP_104930.1 identified by similarity to PIR:F83367 YP_104933.1 identified by similarity to GP:14022445 YP_104934.1 identified by similarity to GP:17431566; match to protein family HMM PF01391 YP_104936.1 identified by similarity to SP:P42790; match to protein family HMM PF00082 YP_104938.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_104940.1 identified by match to protein family HMM PF00561 YP_104941.1 identified by similarity to OMNI:NTL03PA01209 YP_104942.1 identified by match to protein family HMM PF00106 YP_104943.1 identified by match to protein family HMM PF00440 YP_104945.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_104946.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_104947.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_104948.1 identified by similarity to GP:3891593; match to protein family HMM PF00043; match to protein family HMM PF02798 YP_104949.1 identified by similarity to OMNI:NTL03PA03036; match to protein family HMM PF01243 YP_104950.1 identified by match to protein family HMM PF07662; match to protein family HMM PF07670 YP_104951.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_104953.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_104954.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354 YP_104955.1 identified by similarity to SP:P27291; match to protein family HMM PF04972 YP_104956.1 identified by similarity to SP:P06999; match to protein family HMM PF00294 YP_104958.1 Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation YP_104959.1 Catalyses the synthesis of acetylphosphate from acetyl-CoA and inorganic phosphate YP_104960.1 identified by similarity to SP:O66392; match to protein family HMM PF00561; match to protein family HMM PF07167 YP_104961.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit YP_104962.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_104963.1 identified by similarity to GB:AAC38051.1; match to protein family HMM TIGR02230 YP_104965.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0 YP_104966.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_104967.1 identified by similarity to GP:2605825; match to protein family HMM PF00430 YP_104968.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit YP_104969.1 identified by similarity to SP:P41169 YP_104970.1 identified by similarity to SP:P39451; match to protein family HMM PF00107 YP_104972.1 identified by similarity to OMNI:NTL01RS0339 YP_104973.1 identified by similarity to SP:P07017; match to protein family HMM PF00015 YP_104975.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_104976.1 identified by similarity to SP:P31993; match to protein family HMM PF01061 YP_104977.1 identified by match to protein family HMM PF00005; match to protein family HMM PF01061 YP_104978.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_104979.1 identified by match to protein family HMM PF00440 YP_104981.1 identified by match to protein family HMM PF00582 YP_104983.1 identified by match to protein family HMM PF02687 YP_104984.1 identified by match to protein family HMM PF00005 YP_104985.1 identified by match to protein family HMM PF00529 YP_104986.1 identified by match to protein family HMM PF01522 YP_104988.1 identified by similarity to SP:P02942; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_104989.1 identified by similarity to SP:P23846; match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_104990.1 identified by match to protein family HMM PF00685 YP_104991.1 identified by similarity to SP:P27291; match to protein family HMM PF04972 YP_104993.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_104995.1 identified by match to protein family HMM PF00107 YP_104996.1 identified by similarity to GP:3220199; match to protein family HMM PF00027; match to protein family HMM PF00325 YP_104998.1 identified by similarity to SP:P23238; match to protein family HMM PF00106; match to protein family HMM TIGR01829 YP_105000.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_105001.1 identified by similarity to OMNI:NTL03PA01543 YP_105002.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_105004.1 identified by similarity to SP:P25737; match to protein family HMM PF00324 YP_105005.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105006.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105007.1 identified by match to protein family HMM PF02012 YP_105008.1 identified by similarity to GP:9949172 YP_105009.1 identified by match to protein family HMM PF00857 YP_105010.1 identified by match to protein family HMM PF01047 YP_105011.1 identified by match to protein family HMM PF07859 YP_105012.1 catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol YP_105013.1 with BenAB catalyzes the formation of 2-hydro-1,2-dihydroxybenzoate from benzoate YP_105014.1 identified by similarity to SP:P07770; match to protein family HMM PF00866 YP_105015.1 identified by similarity to SP:P07769; match to protein family HMM PF00355; match to protein family HMM PF00848 YP_105016.1 identified by similarity to GP:23491546; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105017.1 identified by similarity to GP:17430358 YP_105018.1 identified by match to protein family HMM PF00165 YP_105019.1 identified by similarity to SP:P42593; match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_105021.1 identified by similarity to SP:P18400; match to protein family HMM PF06481; match to protein family HMM TIGR01433 YP_105022.1 identified by similarity to SP:P18401; match to protein family HMM PF00115 YP_105023.1 identified by similarity to SP:P18402; match to protein family HMM PF00510 YP_105024.1 identified by similarity to SP:P18403; match to protein family HMM PF03626 YP_105025.1 identified by match to protein family HMM PF02426 YP_105026.1 identified by similarity to GP:4579706; match to protein family HMM PF00775; match to protein family HMM PF04444; match to protein family HMM TIGR02439 YP_105027.1 identified by similarity to GP:4579705; match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR02534 YP_105028.1 identified by similarity to GP:23491534; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105029.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_105030.1 identified by similarity to GP:4406507; match to protein family HMM PF00355; match to protein family HMM PF00848 YP_105031.1 identified by similarity to GP:4406506; match to protein family HMM PF00866 YP_105032.1 identified by similarity to SP:P23082; match to protein family HMM PF00355 YP_105033.1 identified by similarity to GP:9929802; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_105034.1 identified by similarity to SP:O07513; match to protein family HMM PF01230 YP_105035.1 identified by match to protein family HMM PF00614 YP_105037.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831 YP_105038.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis YP_105039.1 identified by similarity to SP:P25526; match to protein family HMM PF00171 YP_105040.1 identified by similarity to GB:AAN51313.1 YP_105042.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_105043.1 identified by similarity to SP:P39217; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_105045.1 identified by similarity to SP:P07801; match to protein family HMM PF00515; match to protein family HMM PF01739; match to protein family HMM PF07719 YP_105046.1 identified by similarity to SP:Q52881 YP_105047.1 identified by similarity to GP:3493635; match to protein family HMM PF00072; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_338317.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_105048.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_105049.1 identified by match to protein family HMM PF00654 YP_105050.1 identified by match to protein family HMM PF02517 YP_105052.1 identified by similarity to GB:CAE35182.1 YP_105053.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_105054.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_105055.1 identified by match to protein family HMM PF01965 YP_105056.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_105058.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413 YP_338322.1 identified by similarity to GB:CAD78661.1 YP_105060.1 identified by similarity to GP:9885233; match to protein family HMM PF02566 YP_105061.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105062.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_105063.1 identified by match to protein family HMM PF01636 YP_105064.1 identified by match to protein family HMM PF00300 YP_105065.1 identified by similarity to GP:148510; match to protein family HMM PF00106 YP_105066.1 Converts 2,5-dichloro-2,5-cyclohexadiene-1,4-diol to 2,5-dichlorohydroquinone YP_105067.1 identified by similarity to SP:P76113; match to protein family HMM PF00107 YP_105070.1 identified by match to protein family HMM PF07690 YP_105071.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_105073.1 identified by similarity to OMNI:NTL03PA02651; match to protein family HMM PF01594 YP_105075.1 identified by similarity to GP:17428896 YP_105076.1 identified by similarity to GP:15978663; match to protein family HMM PF05957 YP_105078.1 identified by match to protein family HMM PF03372 YP_105079.1 identified by match to protein family HMM PF04946 YP_338324.1 identified by similarity to OMNI:NTL02ML2000 YP_105080.1 identified by match to protein family HMM PF04542 YP_105082.1 identified by similarity to SP:P75820; match to protein family HMM PF01510 YP_105084.1 identified by similarity to GP:6449424; match to protein family HMM PF02915 YP_105085.1 identified by similarity to OMNI:NTL02ST2538 YP_105086.1 identified by similarity to PIR:T35632 YP_105088.1 identified by similarity to SP:Q48460 YP_105089.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105090.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105092.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_105093.1 identified by match to protein family HMM PF01810 YP_105095.1 identified by similarity to GB:BAC75281.1 YP_105096.1 identified by similarity to SP:P33232; match to protein family HMM PF01070 YP_105097.1 identified by similarity to SP:P36922; match to protein family HMM PF04073 YP_105098.1 identified by similarity to GP:13399875; match to protein family HMM PF02922 YP_105100.1 identified by similarity to OMNI:NTL03PA05363; match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_105101.1 identified by match to protein family HMM PF00512 YP_105102.1 identified by similarity to OMNI:NTL03PA03605; match to protein family HMM PF00892 YP_105103.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105104.1 identified by match to protein family HMM PF01361 YP_105106.1 identified by similarity to SP:P46930; match to protein family HMM PF00126; match to protein family HMM PF03459; match to protein family HMM TIGR00637; match to protein family HMM TIGR00638 YP_105109.1 identified by similarity to GP:17298548; match to protein family HMM PF00005 YP_105110.1 identified by similarity to SP:P09834; match to protein family HMM PF00528; match to protein family HMM TIGR02141 YP_105111.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_105112.1 identified by match to protein family HMM PF01569 YP_105113.1 identified by similarity to SP:P52090; match to protein family HMM TIGR01840 YP_105115.1 identified by similarity to SP:O68390; match to protein family HMM PF02566 YP_105116.1 identified by match to protein family HMM PF01047 YP_105118.1 identified by similarity to GP:17429254 YP_105119.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine YP_105120.1 identified by similarity to GP:17429252 YP_105121.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_105122.1 identified by match to protein family HMM PF00589 YP_105124.1 identified by similarity to OMNI:NTL01SM00856; match to protein family HMM PF04463 YP_105125.1 identified by similarity to GP:17429170 YP_105126.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_105127.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_105128.1 identified by similarity to SP:P00393; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_105129.1 identified by similarity to GP:17431553 YP_105131.1 identified by similarity to PIR:S02022; match to protein family HMM PF01738 YP_105132.1 identified by match to protein family HMM PF00581 YP_105134.1 identified by similarity to OMNI:NTL01RS2224; match to protein family HMM PF00355 YP_105135.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_105136.1 identified by similarity to SP:P22939; match to protein family HMM PF00348 YP_105137.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_105138.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_105139.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_105141.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_105142.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_105143.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_105144.1 identified by match to protein family HMM PF02637 YP_105145.1 synthesizes RNA primers at the replication forks YP_105146.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_105147.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105148.1 identified by similarity to GB:CAE31158.1 YP_105150.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105151.1 identified by similarity to OMNI:NTL02SC6324 YP_105153.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_105155.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_105156.1 identified by similarity to SP:P06202; match to protein family HMM PF00496 YP_105157.1 identified by similarity to SP:P31132; match to protein family HMM PF00528 YP_338334.1 identified by similarity to SP:P08006 YP_105158.1 identified by similarity to SP:P04285; match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_105159.1 identified by similarity to SP:P32722; match to protein family HMM PF03573 YP_105161.1 identified by match to protein family HMM PF00597 YP_105163.1 identified by similarity to OMNI:NTL01RS2518 YP_105164.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_105165.1 identified by similarity to GP:17431855 YP_105166.1 identified by match to protein family HMM PF00816 YP_105168.1 identified by match to protein family HMM PF00583; match to protein family HMM PF02629 YP_105169.1 catalyzes the formation of indole-3-acetic acid from indole-3-acetamide YP_105170.1 identified by match to protein family HMM PF01614 YP_105173.1 identified by similarity to GP:15979606; match to protein family HMM PF01557 YP_105174.1 identified by similarity to SP:P33232; match to protein family HMM PF01070 YP_105175.1 identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105176.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_105178.1 identified by similarity to SP:P39171; match to protein family HMM PF00266 YP_105179.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_105180.1 identified by match to protein family HMM PF00753 YP_105181.1 identified by match to protein family HMM PF00581; match to protein family HMM PF01022 YP_105183.1 identified by similarity to GB:CAE28061.1 YP_105184.1 identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105185.1 identified by match to protein family HMM PF00106 YP_105187.1 identified by match to protein family HMM PF01360 YP_105189.1 identified by match to protein family HMM PF00498 YP_105190.1 identified by similarity to GB:CAE31311.1; match to protein family HMM PF00515 YP_105193.1 identified by match to protein family HMM PF05936 YP_105194.1 identified by match to protein family HMM PF00691 YP_105195.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_338342.1 identified by similarity to GP:9945900 YP_105196.1 identified by match to protein family HMM PF00069 YP_105197.1 identified by match to protein family HMM PF06812 YP_338343.1 identified by similarity to OMNI:NTL03PA00084 YP_338344.1 identified by similarity to OMNI:NTL03PA00085 YP_105198.1 identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_105199.1 identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646 YP_105200.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_105201.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105202.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105204.1 identified by match to protein family HMM PF01787; match to protein family HMM PF02133 YP_105205.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_105206.1 identified by match to protein family HMM PF06080 YP_105207.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_105209.1 identified by match to protein family HMM PF07883 YP_105210.1 identified by similarity to SP:P33648; match to protein family HMM PF01476; match to protein family HMM PF01551 YP_105212.1 identified by similarity to SP:P08732; match to protein family HMM PF01292 YP_105214.1 identified by similarity to OMNI:NTL03PA03790; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01778 YP_105215.1 acts as a molecular chaperone to fold and export lipase A YP_105216.1 identified by match to protein family HMM PF00392 YP_105217.1 identified by match to protein family HMM PF00005 YP_105218.1 identified by similarity to SP:P23861; match to protein family HMM PF01547 YP_105219.1 identified by match to protein family HMM PF00528 YP_338350.1 identified by similarity to SP:P42790 YP_105220.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105221.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_338351.1 identified by similarity to OMNI:NTL03ST0269 YP_105222.1 identified by match to protein family HMM PF05943 YP_105223.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_105224.1 identified by similarity to OMNI:NTL01YP0486; match to protein family HMM PF00805 YP_105225.1 identified by match to protein family HMM PF00805 YP_105226.1 identified by similarity to GB:CAE31305.1 YP_105228.1 identified by match to protein family HMM PF00691 YP_105229.1 identified by similarity to GP:15978610; match to protein family HMM PF06744; match to protein family HMM PF06761 YP_338358.1 identified by similarity to GP:15978611 YP_105231.1 identified by similarity to SP:Q51559 YP_105232.1 identified by similarity to GP:452504; match to protein family HMM PF03033 YP_105233.1 identified by similarity to SP:P27304; match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_105234.1 identified by similarity to OMNI:NTL03PA01131; match to protein family HMM TIGR01556 YP_105235.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_105236.1 identified by similarity to SP:P27303; match to protein family HMM PF00529 YP_105237.1 identified by similarity to SP:P05656; match to protein family HMM PF00251 YP_105238.1 identified by similarity to SP:O68609; match to protein family HMM PF02435 YP_105239.1 identified by similarity to SP:P21867; match to protein family HMM PF00532 YP_105240.1 identified by similarity to SP:P46154; match to protein family HMM PF00107 YP_105241.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_105243.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_105244.1 identified by match to protein family HMM PF01244 YP_105245.1 identified by similarity to GP:17430524; match to protein family HMM PF02830 YP_105246.1 identified by match to protein family HMM PF00724; match to protein family HMM PF07992 YP_105247.1 identified by similarity to GP:17430526; match to protein family HMM PF00037; match to protein family HMM PF02754 YP_105248.1 identified by similarity to SP:P38974; match to protein family HMM PF00766 YP_105249.1 identified by similarity to OMNI:NTL03PA05402 YP_105250.1 identified by match to protein family HMM PF00355 YP_105251.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_105252.1 identified by match to protein family HMM PF04069 YP_105253.1 identified by match to protein family HMM PF00324 YP_105254.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_105255.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105256.1 identified by similarity to GP:3046314; match to protein family HMM PF00884 YP_105257.1 identified by match to protein family HMM PF04069 YP_105258.1 identified by match to protein family HMM PF00267 YP_105259.1 identified by similarity to SP:Q01693; match to protein family HMM PF01546; match to protein family HMM PF04389 YP_105260.1 identified by match to protein family HMM PF07504 YP_105261.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_105262.1 identified by match to protein family HMM PF04069 YP_105263.1 identified by match to protein family HMM PF05853 YP_105264.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_105265.1 identified by similarity to OMNI:NTL03PA05386 YP_105266.1 identified by similarity to GP:2853612; match to protein family HMM PF07859 YP_338361.1 identified by similarity to OMNI:MT0074 YP_105268.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105269.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105270.1 identified by match to protein family HMM PF00324 YP_105271.1 identified by match to protein family HMM PF02900 YP_105272.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate YP_105273.1 identified by match to protein family HMM TIGR00365 YP_105274.1 identified by similarity to SP:P37186; match to protein family HMM TIGR00536 YP_105275.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_105276.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_105278.1 identified by match to protein family HMM PF00557 YP_105279.1 identified by match to protein family HMM PF00857 YP_105280.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_105281.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_105283.1 identified by match to protein family HMM PF03009; match to protein family HMM TIGR01409 YP_105285.1 identified by similarity to SP:P25527; match to protein family HMM PF00324; match to protein family HMM TIGR01773 YP_105287.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_105289.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_105292.1 identified by match to protein family HMM PF01360; match to protein family HMM TIGR01988 YP_105293.1 identified by similarity to SP:P21892; match to protein family HMM PF01323 YP_105294.1 identified by match to protein family HMM PF00595; match to protein family HMM PF05299 YP_105295.1 identified by similarity to SP:P41407; match to protein family HMM PF02525 YP_105296.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_105297.1 identified by match to protein family HMM PF01928 YP_105298.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_105299.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_105300.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_105301.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_105302.1 identified by similarity to SP:P40853; match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_105303.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_105304.1 protein associated with Co2+ and Mg2+ efflux YP_105306.1 identified by similarity to SP:P46885; match to protein family HMM PF03562; match to protein family HMM PF06725 YP_105307.1 identified by similarity to SP:P76085; match to protein family HMM TIGR02155 YP_105309.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_105310.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_105311.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02288 YP_105312.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_105314.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105315.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105316.1 identified by match to protein family HMM PF00149 YP_105317.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105318.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105319.1 identified by match to protein family HMM PF01758 YP_105320.1 identified by similarity to SP:P45947; match to protein family HMM PF01451 YP_105321.1 identified by match to protein family HMM PF00903 YP_105322.1 identified by match to protein family HMM PF01022 YP_105324.1 identified by match to protein family HMM PF03358 YP_105325.1 identified by similarity to SP:P17328; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_105326.1 identified by similarity to SP:P17327; match to protein family HMM PF00528 YP_105327.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_105328.1 identified by similarity to SP:P46922; match to protein family HMM PF04069 YP_105329.1 identified by match to protein family HMM PF05118 YP_105332.1 identified by similarity to OMNI:NTL02ML1509; match to protein family HMM PF05118 YP_338365.1 identified by similarity to GP:695275 YP_105333.1 identified by similarity to SP:P30147 YP_105334.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_105335.1 identified by match to protein family HMM PF00596 YP_105336.1 identified by similarity to SP:Q46889; match to protein family HMM PF07005 YP_105337.1 identified by similarity to SP:P23523; match to protein family HMM PF03446 YP_105338.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_105339.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_105340.1 identified by match to protein family HMM PF07883 YP_105343.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105344.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105345.1 identified by similarity to OMNI:NTL02SC7085; match to protein family HMM PF03583 YP_105347.1 identified by similarity to SP:Q04064; match to protein family HMM PF00267 YP_105349.1 identified by similarity to GP:13926142; match to protein family HMM PF03640 YP_105350.1 identified by match to protein family HMM PF00196 YP_105351.1 identified by match to protein family HMM PF00324 YP_105352.1 identified by similarity to GP:1310704; match to protein family HMM PF03576 YP_105355.1 identified by similarity to SP:P24128; match to protein family HMM PF04632 YP_105356.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105359.1 identified by similarity to SP:Q04064; match to protein family HMM PF00267 YP_105360.1 identified by match to protein family HMM PF00903 YP_105361.1 identified by similarity to SP:P25525; match to protein family HMM PF02133 YP_105362.1 identified by match to protein family HMM PF07905; match to protein family HMM TIGR01199 YP_105363.1 identified by similarity to SP:P25524; match to protein family HMM PF01979; match to protein family HMM PF07969 YP_105364.1 identified by match to protein family HMM PF07690 YP_105365.1 identified by similarity to OMNI:NTL02ML0820; match to protein family HMM PF05853 YP_105366.1 identified by match to protein family HMM PF00106 YP_105367.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_105368.1 identified by match to protein family HMM PF00654 YP_105370.1 identified by similarity to SP:Q51658; match to protein family HMM PF03150 YP_105371.1 identified by match to protein family HMM PF04185 YP_105372.1 identified by match to protein family HMM TIGR01409 YP_105374.1 identified by similarity to GP:999422 YP_105375.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_105377.1 identified by match to protein family HMM PF01047 YP_105378.1 identified by match to protein family HMM PF03758 YP_105380.1 identified by match to protein family HMM PF05899 YP_105381.1 identified by similarity to GP:17431950 YP_105383.1 catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA YP_105384.1 identified by similarity to GP:1946288; match to protein family HMM PF00171 YP_105385.1 identified by similarity to SP:P77589; match to protein family HMM PF00083; match to protein family HMM PF07690 YP_105386.1 identified by similarity to SP:Q04064; match to protein family HMM PF00267 YP_105387.1 identified by similarity to GP:19068133; match to protein family HMM PF07519 YP_105389.1 identified by match to protein family HMM PF01614 YP_105390.1 identified by match to protein family HMM PF00532 YP_105391.1 identified by match to protein family HMM PF00005 YP_105392.1 identified by match to protein family HMM PF02653 YP_105393.1 identified by match to protein family HMM PF04909 YP_105394.1 identified by match to protein family HMM PF00106 YP_105395.1 identified by match to protein family HMM PF01557 YP_105396.1 identified by match to protein family HMM PF00106 YP_105397.1 identified by similarity to GB:AAO76383.1 YP_105399.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105400.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105401.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662 YP_105403.1 identified by similarity to GP:4107150; match to protein family HMM PF00816 YP_105404.1 identified by match to protein family HMM PF01614 YP_105406.1 identified by match to protein family HMM PF00563 YP_105408.1 identified by match to protein family HMM PF00440 YP_105410.1 identified by match to protein family HMM PF01094 YP_105412.1 identified by similarity to SP:P54176; match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_105413.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254 YP_105414.1 identified by similarity to SP:P37403; match to protein family HMM PF01037 YP_105415.1 identified by similarity to SP:P15993; match to protein family HMM PF00324 YP_105416.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_105417.1 identified by similarity to GP:17431984 YP_105419.1 identified by match to protein family HMM PF00583 YP_105420.1 identified by match to protein family HMM PF03171 YP_105424.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_105425.1 identified by match to protein family HMM PF00072 YP_105426.1 identified by match to protein family HMM PF04509 YP_105427.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073 YP_105428.1 identified by similarity to GB:AAN49385.1; match to protein family HMM PF01835 YP_105430.1 identified by similarity to GB:AAQ57872.1 YP_105432.1 identified by match to protein family HMM PF02668 YP_105434.1 identified by similarity to SP:Q03046; match to protein family HMM PF00266 YP_105436.1 identified by similarity to SP:P43154; match to protein family HMM PF01752 YP_105438.2 associated with the biosynthesis repression of 4-hydroxy-2-alkylquinolines (HAQs) and HAQ-analogs, which act as extracellular signals that interact with quorum sensing YP_105440.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01381; match to protein family HMM PF07883 YP_338379.1 identified by similarity to GB:CAD13731.1 YP_105442.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_105443.1 identified by match to protein family HMM PF00582 YP_105444.1 identified by match to protein family HMM PF00582 YP_105445.1 identified by match to protein family HMM PF00582 YP_105446.1 identified by match to protein family HMM PF00582 YP_105447.1 identified by similarity to SP:P14940; match to protein family HMM PF00107 YP_105449.1 identified by match to protein family HMM PF00597 YP_105450.1 identified by match to protein family HMM PF07690 YP_105451.1 identified by match to protein family HMM PF00106 YP_105452.1 identified by similarity to OMNI:NTL03PA02095 YP_105453.1 identified by match to protein family HMM PF00324 YP_105455.1 identified by match to protein family HMM PF01381 YP_105456.1 identified by match to protein family HMM PF00816 YP_105457.1 identified by match to protein family HMM PF08028 YP_338384.1 identified by similarity to OMNI:NTL03PA00831 YP_105459.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105460.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105461.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_338388.1 identified by similarity to GB:AAR33761.1 YP_105463.1 identified by similarity to GB:AAR33760.1 YP_105465.1 identified by similarity to GB:CAE31305.1 YP_105466.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_105467.1 identified by similarity to SP:Q9RA63; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_105468.1 identified by match to protein family HMM PF06996 YP_338391.1 identified by similarity to OMNI:NTL03PA00264 YP_338392.1 identified by similarity to OMNI:NTL03PA01659 YP_105469.1 identified by similarity to SP:P18540; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_105470.1 identified by similarity to SP:P07545; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_105471.1 identified by match to protein family HMM PF06812 YP_105472.1 identified by similarity to OMNI:NTL01BM1871; match to protein family HMM PF05658; match to protein family HMM PF05662 YP_105473.1 identified by similarity to GP:5690244 YP_105474.1 identified by similarity to SP:P75820; match to protein family HMM PF01510 YP_105476.1 identified by match to protein family HMM PF02630 YP_105477.1 identified by similarity to GP:11228445; match to protein family HMM PF03781 YP_105478.1 identified by similarity to SP:Q02219; match to protein family HMM PF00034; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR02376 YP_338395.1 identified by similarity to GP:14028441 YP_105480.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_105482.1 identified by similarity to OMNI:NTL03PA03358; match to protein family HMM PF00892 YP_338398.1 This hypothetical protein contains 42 C-terminal codons of IS1356 transposase.; identified by similarity to GP:1477486 YP_105484.1 identified by similarity to SP:P38105; match to protein family HMM PF00107 YP_105485.1 identified by similarity to SP:P38104; match to protein family HMM PF01188; match to protein family HMM PF02746 YP_105486.1 identified by match to protein family HMM PF00392 YP_105487.1 identified by similarity to SP:P77260; match to protein family HMM PF01232; match to protein family HMM PF08125 YP_105488.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR01409 YP_105489.1 identified by similarity to SP:P09392; match to protein family HMM PF00455 YP_105491.1 identified by match to protein family HMM PF00440 YP_105492.1 identified by match to protein family HMM PF01266 YP_105494.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105496.1 identified by match to protein family HMM PF00155 YP_105497.1 identified by similarity to GP:11990463; match to protein family HMM PF00171 YP_105498.1 identified by similarity to SP:P41780; match to protein family HMM PF02424 YP_105499.1 identified by similarity to OMNI:NTL01BMA1013 YP_338400.1 identified by similarity to GP:17985229 YP_105500.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_105501.1 identified by similarity to OMNI:BRA0228; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_105503.1 identified by match to protein family HMM PF00583 YP_105504.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_105506.1 identified by similarity to GP:3878969 YP_105507.1 identified by match to protein family HMM PF02373 YP_105509.1 identified by similarity to GP:498170; match to protein family HMM PF00278; match to protein family HMM PF00355; match to protein family HMM PF02784 YP_105511.1 identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732 YP_105512.1 identified by similarity to GP:2584871 YP_105513.1 identified by match to protein family HMM PF00440 YP_105514.1 identified by similarity to GP:16877964; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_105515.1 identified by match to protein family HMM PF01039 YP_105516.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_105517.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_105520.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05662 YP_105521.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105522.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105524.1 catalyzes the formation of glutamate from glutamine YP_105525.1 identified by similarity to SP:P52108; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_105526.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_105527.2 identified by match to protein family HMM PF01103; match to protein family HMM PF01734 YP_105528.1 identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904 YP_105529.1 identified by match to protein family HMM PF00034 YP_105530.1 identified by match to protein family HMM PF01966 YP_105531.1 identified by similarity to GP:14021621; match to protein family HMM PF06202 YP_105533.1 identified by similarity to OMNI:NTL01RS0107; match to protein family HMM PF00903 YP_105534.1 identified by similarity to GP:3891593; match to protein family HMM PF00043; match to protein family HMM PF02798 YP_105535.1 identified by similarity to OMNI:NTL01SM02087; match to protein family HMM PF05988 YP_105536.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_105537.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_338407.1 identified by similarity to OMNI:NTL02ML4672 YP_105539.1 identified by similarity to SP:P08986 YP_105540.1 identified by match to protein family HMM PF00581 YP_105541.1 upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism YP_105542.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_105543.1 identified by similarity to OMNI:NTL02ML0022; match to protein family HMM PF04993 YP_105545.1 identified by match to protein family HMM PF07298 YP_105547.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105548.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_338410.1 This gene is disrupted by an IS407 element; identified by similarity to SP:P19780 YP_105549.1 identified by similarity to SP:P80064; match to protein family HMM PF00903 YP_105550.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_105551.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_105552.1 identified by similarity to SP:P31457; match to protein family HMM PF00083; match to protein family HMM PF07690 YP_105553.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate YP_105555.1 identified by match to protein family HMM PF01547 YP_105556.1 identified by match to protein family HMM PF00005 YP_105557.1 identified by match to protein family HMM PF00528 YP_105558.1 identified by match to protein family HMM PF01663; match to protein family HMM TIGR02335 YP_105559.1 identified by similarity to SP:Q59931; match to protein family HMM PF00171 YP_105562.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105563.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105565.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_105566.1 identified by match to protein family HMM PF04378 YP_105567.1 identified by match to protein family HMM PF00248 YP_105568.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_105570.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_105571.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_105572.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_105573.1 identified by similarity to OMNI:BRA0381 YP_105575.1 identified by match to protein family HMM PF03239 YP_105577.1 identified by similarity to SP:P45504; match to protein family HMM PF03928 YP_105578.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105579.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105580.1 identified by similarity to SP:Q97LQ3 YP_105581.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105582.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_338415.1 identified by similarity to SP:Q46337 YP_105583.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526 YP_105585.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_105587.1 identified by similarity to SP:P72188; match to protein family HMM PF00313 YP_105593.1 Involved in the metabolism of aromatic amino acids YP_105594.1 identified by match to protein family HMM PF02566 YP_105595.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229 YP_105596.1 identified by match to protein family HMM PF00072 YP_105597.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229 YP_105598.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_105600.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_105601.1 catalyzes the formation of betaine from betaine aldehyde YP_105602.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes YP_105603.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105604.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105605.1 identified by similarity to SP:Q51559 YP_105607.1 identified by similarity to GP:452504; match to protein family HMM PF03033 YP_105608.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_105609.1 identified by similarity to OMNI:NTL03PA01131; match to protein family HMM TIGR01556 YP_105610.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_105611.1 identified by similarity to SP:P27303; match to protein family HMM PF00529 YP_105613.1 identified by similarity to SP:Q06903; match to protein family HMM PF00326; match to protein family HMM PF02897 YP_105614.1 identified by match to protein family HMM PF00581 YP_105615.1 identified by similarity to SP:Q59967; match to protein family HMM PF00132 YP_105616.1 identified by match to protein family HMM PF01381 YP_105617.1 identified by similarity to SP:Q55032 YP_105618.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979 YP_105619.1 identified by match to protein family HMM PF01292 YP_105621.1 identified by match to protein family HMM PF01022 YP_105622.1 identified by match to protein family HMM PF04143 YP_105623.1 identified by similarity to GP:17427447; match to protein family HMM PF04143 YP_105624.1 identified by similarity to GP:5821733; match to protein family HMM PF00583 YP_105626.1 identified by similarity to GB:CAD14292.1 YP_105627.1 identified by similarity to GP:17430896 YP_338421.1 identified by similarity to OMNI:NTL02ML0722 YP_105628.1 identified by match to protein family HMM PF03150 YP_105629.1 identified by match to protein family HMM PF00149 YP_105630.1 identified by match to protein family HMM PF04909 YP_105631.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_105632.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_105633.1 identified by match to protein family HMM PF07690 YP_105634.1 identified by similarity to SP:P37403; match to protein family HMM PF01037 YP_105635.1 catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate YP_105637.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_338422.1 identified by similarity to SP:P44074 YP_338423.1 identified by similarity to GB:AAQ60328.1 YP_105639.1 identified by similarity to OMNI:NTL02ML6200; match to protein family HMM PF07045 YP_105640.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_105641.1 identified by similarity to SP:O07438; match to protein family HMM PF07973 YP_105642.1 identified by similarity to GP:3128363; match to protein family HMM PF00892 YP_105643.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_105646.1 identified by match to protein family HMM PF04185 YP_105648.1 identified by similarity to GP:7327686; match to protein family HMM PF00144 YP_105649.1 identified by similarity to SP:P17447; match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_105650.1 identified by similarity to OMNI:NTL01RS1377; match to protein family HMM PF01380 YP_105651.1 identified by match to protein family HMM PF01112 YP_105652.1 identified by match to protein family HMM PF00005 YP_105653.1 identified by match to protein family HMM PF00496 YP_105654.1 identified by similarity to SP:P37316; match to protein family HMM PF00528 YP_338427.1 identified by similarity to SP:P94312 YP_105655.1 identified by similarity to SP:P26902; match to protein family HMM PF04951 YP_105656.1 identified by similarity to SP:P15109; match to protein family HMM PF00775; match to protein family HMM TIGR02423 YP_105657.1 identified by similarity to SP:P15110; match to protein family HMM PF00775; match to protein family HMM TIGR02422 YP_105658.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR02424 YP_105660.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_105661.1 identified by match to protein family HMM PF01596 YP_105662.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_105663.1 identified by match to protein family HMM PF04946 YP_105664.1 identified by similarity to GB:AAM41702.1 YP_105665.1 identified by match to protein family HMM PF00324 YP_105666.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105667.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105668.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_105670.1 identified by similarity to SP:P54422; match to protein family HMM PF01019; match to protein family HMM TIGR00066 YP_105671.1 identified by similarity to GP:17384364; match to protein family HMM PF02321 YP_105673.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412 YP_105675.1 identified by similarity to SP:P22519 YP_105676.1 identified by similarity to OMNI:NTL01RS3348 YP_105677.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105678.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_338431.1 identified by similarity to SP:P04968 YP_105679.1 identified by match to protein family HMM PF00440 YP_105680.1 identified by match to protein family HMM PF01593 YP_105681.1 identified by similarity to GP:7328307; match to protein family HMM PF00892 YP_105682.1 identified by similarity to GP:17430300; match to protein family HMM PF01205 YP_105684.1 identified by similarity to SP:P37929; match to protein family HMM PF04542 YP_105686.1 identified by match to protein family HMM PF00501 YP_105687.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_105688.1 identified by similarity to GP:8050840; match to protein family HMM PF00550 YP_105689.1 identified by similarity to GB:CAE14174.1 YP_105690.1 identified by similarity to GP:3510629; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM TIGR01733 YP_105691.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00550 YP_105692.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105693.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105696.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386 YP_105697.1 identified by similarity to SP:O31395; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387 YP_105698.1 identified by similarity to SP:P94177; match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_105699.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_105700.1 identified by similarity to SP:P13509; match to protein family HMM PF02321 YP_105702.1 identified by similarity to GP:17427429; match to protein family HMM PF04008 YP_105703.1 identified by match to protein family HMM PF04073 YP_105704.1 identified by match to protein family HMM PF00324 YP_105705.1 identified by match to protein family HMM PF01694 YP_105706.1 identified by similarity to GP:5531227; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_105708.1 identified by similarity to SP:Q10830 YP_105709.1 identified by similarity to GP:15981970 YP_105710.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_105711.1 identified by match to protein family HMM PF00873 YP_105712.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_105714.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_105715.1 identified by similarity to GB:BAB88914.1; match to protein family HMM PF00400 YP_105716.1 identified by similarity to GB:AAQ60948.1 YP_105717.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_105719.1 identified by similarity to GP:17430204 YP_105720.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105721.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105722.1 identified by similarity to SP:P08149; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_105723.1 identified by match to protein family HMM PF00532 YP_105724.1 identified by match to protein family HMM PF00106 YP_105725.1 identified by match to protein family HMM PF02254 YP_105727.1 identified by similarity to OMNI:NTL03PA03325 YP_105728.1 identified by similarity to SP:P17978 YP_105730.1 identified by similarity to GP:4835313; match to protein family HMM PF06983 YP_105731.1 identified by match to protein family HMM PF01544 YP_105733.1 identified by match to protein family HMM PF00455 YP_105734.1 identified by match to protein family HMM PF07690 YP_105735.1 identified by similarity to GP:15981959 YP_105737.1 identified by match to protein family HMM PF01547 YP_105738.1 identified by match to protein family HMM PF00528 YP_105739.1 identified by similarity to SP:Q06004; match to protein family HMM PF00107 YP_105740.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_105741.1 identified by match to protein family HMM PF00165 YP_105742.1 identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_105744.1 identified by match to protein family HMM PF00144; match to protein family HMM PF00768 YP_105745.1 identified by similarity to SP:P08149; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_105747.1 identified by similarity to SP:P38038; similarity to GP:6137474; match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00384; match to protein family HMM PF00667; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_105748.1 identified by similarity to SP:P23675; match to protein family HMM PF00355; match to protein family HMM TIGR02378 YP_105749.1 identified by similarity to SP:P08201; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374 YP_105750.1 identified by match to protein family HMM PF07690 YP_105752.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469 YP_105753.1 identified by similarity to GP:619066; match to protein family HMM PF00072; match to protein family HMM PF03861 YP_105755.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_105761.1 identified by similarity to SP:Q48935; match to protein family HMM PF00850 YP_105762.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_105763.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_105764.1 identified by similarity to SP:P25544; similarity to GB:CAE30700.1; match to protein family HMM PF03466 YP_105766.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199 YP_105767.1 identified by match to protein family HMM PF00106 YP_105768.1 identified by match to protein family HMM PF02515 YP_105769.1 identified by similarity to SP:P76113; match to protein family HMM PF00107 YP_105770.1 identified by similarity to GP:4378173; match to protein family HMM PF00465 YP_105771.1 identified by similarity to GP:17431080 YP_105772.1 identified by similarity to GP:17431954 YP_338444.1 identified by similarity to GP:17431955 YP_105773.1 identified by match to protein family HMM PF00691 YP_105774.1 identified by similarity to GP:17431957 YP_105775.1 identified by similarity to GP:5919203; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_105776.1 identified by match to protein family HMM PF03621 YP_105777.1 identified by match to protein family HMM PF07690 YP_105778.1 identified by similarity to GB:CAD70195.1 YP_105779.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_105780.1 identified by similarity to GP:967990; match to protein family HMM PF00267 YP_105781.1 identified by similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_105782.1 identified by match to protein family HMM PF03473; match to protein family HMM PF03476 YP_105783.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_105784.1 identified by similarity to SP:P22104; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_105785.1 identified by match to protein family HMM PF01547 YP_105786.1 identified by match to protein family HMM PF00005 YP_105787.1 identified by similarity to GP:967990; match to protein family HMM PF00267 YP_105788.1 identified by match to protein family HMM PF00107 YP_105789.1 identified by match to protein family HMM PF00165 YP_105790.1 identified by similarity to SP:P42270; match to protein family HMM PF01689; match to protein family HMM TIGR02312 YP_105791.1 identified by similarity to SP:Q05354; match to protein family HMM PF02962 YP_105792.1 identified by similarity to GP:6688481; match to protein family HMM PF02900; match to protein family HMM TIGR02298 YP_105793.1 identified by similarity to GB:CAA86041.1; match to protein family HMM PF00171; match to protein family HMM TIGR02299 YP_105794.1 identified by similarity to SP:P37352; match to protein family HMM PF01557; match to protein family HMM TIGR02303 YP_105795.1 identified by similarity to SP:P37352; match to protein family HMM PF01557; match to protein family HMM TIGR02305 YP_105796.1 identified by similarity to SP:Q07095; match to protein family HMM PF01047; match to protein family HMM TIGR02337 YP_105797.1 identified by similarity to OMNI:NTL01RS1462; match to protein family HMM PF07993 YP_338446.1 identified by similarity to GP:17430089 YP_105798.1 identified by similarity to SP:P52108; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_105799.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_105800.1 identified by similarity to SP:P54995 YP_105801.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_105803.1 identified by similarity to GP:10129765 YP_105804.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_105805.1 identified by similarity to SP:Q51697; match to protein family HMM PF00111; match to protein family HMM PF01799 YP_105806.1 identified by similarity to SP:Q51698 YP_105809.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_105810.1 identified by similarity to GP:18092666 YP_105811.1 identified by match to protein family HMM PF00196 YP_105812.1 identified by similarity to GP:11344608; match to protein family HMM PF00510 YP_105815.3 identified by similarity to SP:P37196; match to protein family HMM PF01204 YP_105817.1 identified by match to protein family HMM PF07690 YP_105818.1 identified by similarity to OMNI:NTL02EC1103; match to protein family HMM PF06224 YP_105819.1 identified by similarity to OMNI:NT01MC2541; match to protein family HMM PF07866 YP_105821.1 identified by similarity to GB:AAQ60919.1 YP_105822.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105823.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105825.1 identified by similarity to SP:P36948 YP_105826.1 identified by match to protein family HMM PF02653 YP_105827.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_105828.1 identified by match to protein family HMM PF04773 YP_105829.1 identified by similarity to SP:P23484; match to protein family HMM PF04542 YP_105831.1 identified by similarity to OMNI:NTL01AT1452; match to protein family HMM PF03640 YP_105832.1 identified by match to protein family HMM PF04264 YP_105833.1 identified by similarity to OMNI:NTL01AT1450 YP_105834.1 identified by similarity to SP:Q10679; match to protein family HMM PF04542; match to protein family HMM PF04545 YP_105836.1 identified by match to protein family HMM PF00165 YP_105837.1 identified by match to protein family HMM PF01557 YP_105838.1 identified by match to protein family HMM PF02517 YP_105840.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_105842.1 identified by match to protein family HMM PF01699 YP_105843.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105844.1 identified by match to protein family HMM PF00571; match to protein family HMM PF04982 YP_105846.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00654 YP_105847.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_105848.1 identified by similarity to GP:1710900 YP_338453.1 identified by similarity to SP:Q05470 YP_338454.1 identified by similarity to SP:Q05470 YP_105851.1 identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_338455.1 This gene is disrupted by an ISBma1 element; identified by similarity to SP:P40830 YP_105853.1 identified by similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_338456.1 This gene is disrupted by an ISBma1 element YP_105854.1 involved in polyketide synthesis YP_338457.1 involved in polyketide production YP_105855.1 Acyl carrier proteins are involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; this ACP may be involved in the biosynthesis of lipopeptide antibiotics YP_105856.1 involved in polyketide production YP_105857.1 identified by similarity to GP:6434712; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_105858.1 identified by match to protein family HMM PF00355 YP_105859.1 identified by match to protein family HMM PF00165 YP_105860.1 identified by similarity to SP:P74360 YP_105861.1 identified by similarity to SP:Q59635; match to protein family HMM PF00199 YP_105863.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105864.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105865.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580 YP_105867.1 identified by match to protein family HMM PF07690 YP_338461.1 identified by similarity to PIR:AF2139 YP_105869.1 identified by similarity to OMNI:NTL02ML0087; match to protein family HMM PF04828 YP_105870.1 identified by similarity to SP:P33986; match to protein family HMM PF00275 YP_105871.1 identified by similarity to SP:P07109; match to protein family HMM PF00005 YP_105872.1 identified by similarity to SP:P20091; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_338462.1 identified by similarity to SP:P02913 YP_105874.1 identified by similarity to SP:Q04064; match to protein family HMM PF00267 YP_105875.1 identified by match to protein family HMM PF07681 YP_105876.1 identified by match to protein family HMM PF00034 YP_105877.1 identified by similarity to OMNI:NTL01RS0771 YP_105878.1 identified by similarity to OMNI:NTL01RS0770 YP_105880.1 identified by similarity to GP:11177176; match to protein family HMM PF00082 YP_105882.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524 YP_105883.1 identified by similarity to GB:AAM71641.1 YP_105884.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_105885.1 identified by match to protein family HMM PF00384; match to protein family HMM TIGR01701 YP_105886.1 identified by similarity to SP:Q8XTY1; match to protein family HMM PF05249 YP_338464.1 identified by similarity to OMNI:NTL01RS0141 YP_105888.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_105889.1 identified by match to protein family HMM PF00190; match to protein family HMM PF07883 YP_105891.1 identified by match to protein family HMM PF00496 YP_105892.1 identified by similarity to GP:4115629; match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414 YP_105894.1 identified by match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_338467.1 identified by similarity to PIR:AG0439 YP_105896.1 identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646 YP_105898.1 identified by similarity to OMNI:NTL01BMA0557 YP_105899.1 catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis YP_105900.1 identified by similarity to SP:P76128; match to protein family HMM PF00496 YP_105901.1 identified by match to protein family HMM PF00528 YP_105902.1 identified by match to protein family HMM PF00005 YP_338470.1 identified by similarity to GP:14025353 YP_105904.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105905.1 identified by similarity to GP:13649898; match to protein family HMM PF00144 YP_105906.1 identified by similarity to SP:P33648; match to protein family HMM PF01476; match to protein family HMM PF01551 YP_105907.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105908.1 identified by similarity to SP:Q04064; match to protein family HMM PF00267 YP_105910.1 identified by similarity to OMNI:BR1706 YP_105911.1 identified by match to protein family HMM PF00756 YP_105912.1 catalyzes the formation of L-proline from L-ornithine YP_105913.1 identified by similarity to GP:2935027; match to protein family HMM PF02627 YP_105914.1 identified by match to protein family HMM PF00561 YP_105915.1 identified by match to protein family HMM PF02254; match to protein family HMM PF07885 YP_105916.1 identified by similarity to GP:2665709; match to protein family HMM PF01266; match to protein family HMM PF07992 YP_105917.1 identified by similarity to GB:AAQ60677.1 YP_105919.1 identified by similarity to SP:P02942; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_105920.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_105922.1 identified by similarity to SP:P16426; match to protein family HMM PF00583 YP_105923.1 identified by match to protein family HMM PF00376 YP_105924.1 identified by similarity to SP:P75853; match to protein family HMM TIGR01728 YP_105926.1 identified by similarity to GP:17430376; match to protein family HMM PF07947 YP_338474.1 identified by similarity to GP:2804298 YP_105927.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105928.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_338475.1 identified by similarity to OMNI:DR0412 YP_105929.1 identified by similarity to OMNI:NTL01AT0228; match to protein family HMM PF02082 YP_105930.1 identified by similarity to OMNI:NTL01SM02764; match to protein family HMM PF06475 YP_105931.1 identified by similarity to SP:P77567; match to protein family HMM PF00797 YP_105934.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine YP_105935.1 identified by match to protein family HMM PF01037 YP_105936.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_105938.1 identified by similarity to SP:P39177 YP_105939.1 identified by similarity to GP:148862; match to protein family HMM PF00691; match to protein family HMM PF04355 YP_105940.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662 YP_105941.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_105942.1 identified by similarity to SP:P16640; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_105943.1 identified by match to protein family HMM PF00903 YP_105944.1 identified by similarity to SP:P71016; match to protein family HMM PF00171 YP_105945.1 catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis YP_105946.1 identified by similarity to SP:P08142; match to protein family HMM PF00205; match to protein family HMM PF02776 YP_105947.1 identified by match to protein family HMM PF00106 YP_105948.1 identified by match to protein family HMM PF01614 YP_105949.1 identified by match to protein family HMM PF00561 YP_105950.1 identified by similarity to OMNI:NTL03PA03510; match to protein family HMM PF07883 YP_105951.1 member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria YP_105952.1 identified by match to protein family HMM PF00355 YP_105953.1 identified by similarity to PIR:F83209 YP_105954.1 identified by similarity to SP:P23082; match to protein family HMM PF00355 YP_105955.1 identified by match to protein family HMM PF00267 YP_105956.1 identified by match to protein family HMM PF01614 YP_105957.1 identified by match to protein family HMM PF03171 YP_105958.1 identified by match to protein family HMM PF00881 YP_105959.1 identified by match to protein family HMM PF00149 YP_105960.1 identified by match to protein family HMM PF02308 YP_105961.1 identified by similarity to GP:14586760; match to protein family HMM PF00196; match to protein family HMM PF03472 YP_105963.1 identified by match to protein family HMM PF00765 YP_105965.1 identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505 YP_105966.1 identified by match to protein family HMM PF00571 YP_105968.1 identified by similarity to SP:P40679; match to protein family HMM PF01272 YP_105969.1 identified by similarity to GP:967990; match to protein family HMM PF00267 YP_105971.1 identified by match to protein family HMM PF01022 YP_105972.1 identified by similarity to SP:P77258; match to protein family HMM PF00724 YP_105973.1 identified by match to protein family HMM PF00583 YP_105974.1 identified by match to protein family HMM PF01810 YP_105976.1 identified by match to protein family HMM PF00267 YP_105977.1 identified by match to protein family HMM PF00165 YP_105979.1 identified by match to protein family HMM PF00324 YP_105980.1 identified by match to protein family HMM PF00202 YP_105981.1 identified by similarity to SP:P80668; match to protein family HMM PF00171 YP_105982.1 identified by match to protein family HMM PF00196 YP_105983.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_105986.1 identified by match to protein family HMM PF00248 YP_105987.1 identified by similarity to OMNI:NTL02ML2630; match to protein family HMM PF01323 YP_105988.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105989.1 identified by similarity to SP:P24216; match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196 YP_105990.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_105991.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_105992.1 identified by similarity to GP:1041092; match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_105993.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_105994.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_105997.1 identified by similarity to GP:5823581; match to protein family HMM PF07883 YP_105998.1 identified by similarity to GB:AAQ60823.1 YP_106001.1 identified by similarity to OMNI:NTL01ATC0089 YP_338480.1 identified by similarity to OMNI:NTL01ATA1781 YP_106002.1 identified by similarity to SP:P21877; match to protein family HMM PF00535 YP_106003.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_106004.1 activates fatty acids by binding to coenzyme A YP_106005.1 identified by match to protein family HMM PF00027 YP_106006.1 identified by similarity to GP:13122106 YP_106007.1 identified by match to protein family HMM PF00392 YP_106008.1 identified by similarity to GP:5359484; match to protein family HMM PF00106 YP_106009.1 identified by similarity to SP:P23933 YP_106010.1 identified by similarity to GP:27356349; match to protein family HMM PF01594 YP_106011.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_106013.1 identified by similarity to GP:6049281; match to protein family HMM PF00724 YP_106014.1 identified by match to protein family HMM PF01965 YP_106016.1 identified by match to protein family HMM PF00440 YP_106017.1 identified by similarity to GP:17427995; match to protein family HMM PF05231 YP_106018.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_106019.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_106021.1 identified by match to protein family HMM PF00165 YP_106022.1 identified by similarity to SP:Q92XP4; match to protein family HMM PF00070; match to protein family HMM PF04324; match to protein family HMM PF07992 YP_106023.1 identified by similarity to GP:3220201; match to protein family HMM PF00111 YP_106024.1 identified by match to protein family HMM PF01266 YP_106025.1 identified by similarity to GP:6900003; match to protein family HMM PF01816; match to protein family HMM PF05544 YP_106026.1 identified by match to protein family HMM PF00701 YP_106027.1 identified by match to protein family HMM PF00324 YP_106028.1 identified by match to protein family HMM PF00171 YP_106029.1 identified by match to protein family HMM PF02615 YP_106030.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_106031.1 identified by similarity to SP:Q00538; match to protein family HMM PF07690 YP_106032.1 identified by match to protein family HMM PF07681 YP_106034.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_106035.1 identified by similarity to OMNI:NTL01RS1032; match to protein family HMM PF02589 YP_106036.1 identified by similarity to GP:17428628; match to protein family HMM PF00037; match to protein family HMM TIGR00273 YP_106037.1 identified by match to protein family HMM PF02754 YP_106038.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_106041.1 identified by similarity to GP:7637394; match to protein family HMM PF00441; match to protein family HMM PF08028 YP_106043.1 identified by match to protein family HMM PF00528 YP_106044.1 identified by match to protein family HMM PF00005 YP_106045.1 identified by similarity to SP:P54995 YP_106046.1 identified by similarity to SP:P28635; match to protein family HMM PF03180 YP_106048.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_106049.1 identified by match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801 YP_106050.1 identified by similarity to GB:AAN47804.1 YP_106051.1 identified by similarity to GP:1890776 YP_106052.1 identified by match to protein family HMM PF00202 YP_106053.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation YP_106054.1 identified by similarity to SP:P29107; match to protein family HMM PF07991 YP_106056.1 identified by similarity to SP:P00861; match to protein family HMM PF00278; match to protein family HMM PF02784 YP_106057.1 identified by similarity to SP:P94547; match to protein family HMM PF00501 YP_106059.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_106060.1 identified by match to protein family HMM PF00501 YP_106061.1 identified by match to protein family HMM PF03547 YP_106062.1 identified by match to protein family HMM PF00583 YP_106063.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_106064.1 identified by match to protein family HMM PF00375 YP_106065.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_106066.1 identified by similarity to GP:1707645; match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_106067.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_106068.1 identified by similarity to GP:11513478; match to protein family HMM PF07859 YP_106069.1 identified by similarity to GP:17998654; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_106072.1 identified by match to protein family HMM PF06516 YP_106074.1 catalyzes the formation of selenophosphate from selenide and ATP YP_106075.1 identified by similarity to OMNI:NTL02ML2362; match to protein family HMM PF00892 YP_106076.1 identified by similarity to GP:2642341; match to protein family HMM PF05013 YP_106077.1 identified by match to protein family HMM PF01614 YP_106078.1 identified by match to protein family HMM PF03606 YP_338488.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_106079.1 identified by similarity to SP:P50457; match to protein family HMM PF00202; match to protein family HMM TIGR00700 YP_106080.1 identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_106082.1 identified by match to protein family HMM PF00891 YP_106083.1 identified by similarity to SP:P50466; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00785 YP_106085.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_106086.1 identified by match to protein family HMM PF01614; match to protein family HMM TIGR02431 YP_106087.1 identified by match to protein family HMM PF00440 YP_106088.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_106089.1 identified by similarity to GP:535810; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_106090.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_106091.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096 YP_106093.1 identified by similarity to GP:1545849; match to protein family HMM PF01757 YP_106094.1 identified by similarity to OMNI:NTL03PA00892; match to protein family HMM PF04952 YP_106096.1 identified by similarity to SP:P28635; match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_338492.1 This gene is disrupted by an IS element YP_106097.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_106098.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_338493.1 This gene is disrupted by an IS element; identified by similarity to GP:967990 YP_106099.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_106101.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_106102.1 identified by similarity to OMNI:SO0895; match to protein family HMM PF02678; match to protein family HMM PF05726 YP_106103.1 identified by similarity to GP:17428379 YP_338494.1 identified by similarity to SP:P40721 YP_106104.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_106105.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_106108.1 identified by match to protein family HMM PF00165 YP_106110.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_106111.1 identified by similarity to GB:AAC38655.1; match to protein family HMM PF05932 YP_106112.1 identified by similarity to SP:P33546 YP_106114.1 identified by similarity to GP:2852346 YP_106115.1 identified by match to protein family HMM PF01464 YP_106118.1 identified by similarity to SP:P18013; match to protein family HMM TIGR02553 YP_106119.1 identified by similarity to GP:2213665; match to protein family HMM PF00816 YP_106120.1 identified by match to protein family HMM TIGR02101 YP_106121.1 identified by similarity to OMNI:NTL01ST2883; match to protein family HMM PF02987 YP_106122.1 identified by similarity to SP:P40703; match to protein family HMM PF00515; match to protein family HMM PF07720; match to protein family HMM TIGR02552 YP_106123.1 Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins YP_106124.1 identified by similarity to SP:P40701; match to protein family HMM PF01311; match to protein family HMM TIGR01401 YP_106125.1 identified by similarity to SP:P40704; match to protein family HMM PF01313; match to protein family HMM TIGR01403 YP_106126.1 part of a type III secretory system probably involved in invasion into eukaryotic cells YP_106127.1 identified by similarity to SP:P40699; match to protein family HMM PF01052; match to protein family HMM TIGR02551 YP_106129.1 Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase YP_106130.1 identified by similarity to SP:P39443 YP_106131.1 identified by similarity to SP:P35657; match to protein family HMM PF00771; match to protein family HMM TIGR01399 YP_106132.1 identified by similarity to SP:P35671; match to protein family HMM PF02523; match to protein family HMM TIGR02511; match to protein family HMM TIGR02568 YP_106133.1 identified by similarity to SP:P35672; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 YP_106134.1 identified by similarity to SP:P39437; match to protein family HMM PF00165 YP_106135.1 identified by similarity to SP:P41783; match to protein family HMM TIGR02554 YP_106136.1 identified by similarity to SP:P41784; match to protein family HMM TIGR02105 YP_106137.1 identified by similarity to SP:P41785 YP_106138.1 identified by similarity to SP:P41786; match to protein family HMM PF01514; match to protein family HMM TIGR02544 YP_106139.1 identified by similarity to SP:P40823; match to protein family HMM TIGR02555 YP_106142.1 identified by match to protein family HMM PF00486 YP_106144.1 identified by similarity to SP:P05806; match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF07504 YP_106145.1 identified by match to protein family HMM PF01047 YP_106146.1 identified by similarity to GP:17131165; match to protein family HMM PF00903 YP_106147.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_106148.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_106149.1 identified by similarity to SP:P33232; match to protein family HMM PF01070 YP_106152.1 identified by similarity to GP:19032299 YP_106153.1 identified by match to protein family HMM PF01810 YP_106154.1 identified by match to protein family HMM PF01037 YP_106156.1 identified by match to protein family HMM PF01384 YP_106158.1 identified by match to protein family HMM PF00501 YP_106160.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_106161.1 identified by similarity to GP:4103043; match to protein family HMM PF00765 YP_106162.1 identified by match to protein family HMM PF00724 YP_106163.1 identified by similarity to SP:Q47539; match to protein family HMM PF00528 YP_106164.1 identified by similarity to SP:Q47538; match to protein family HMM PF00005 YP_106165.1 identified by similarity to SP:Q47537; match to protein family HMM PF06642 YP_106168.1 identified by match to protein family HMM PF00535 YP_106169.1 identified by similarity to GP:18535631 YP_106170.1 identified by similarity to GB:AAQ60342.1 YP_106171.1 identified by similarity to SP:P37650; match to protein family HMM PF00515; match to protein family HMM PF05420; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_106172.2 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans YP_106173.2 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP) YP_106175.1 identified by similarity to SP:P23873; match to protein family HMM PF01381 YP_106176.1 identified by similarity to SP:P23874; match to protein family HMM PF07804; match to protein family HMM PF07805 YP_106178.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_106179.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_106181.1 identified by similarity to GB:AAN70963.1 YP_106182.1 identified by similarity to GP:14719865; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 YP_106183.1 identified by similarity to GB:AAL05425.1; match to protein family HMM TIGR02532 YP_106184.1 identified by similarity to GB:AAC33154.1 YP_106185.1 identified by similarity to SP:P29487; match to protein family HMM PF00482 YP_106186.1 identified by match to protein family HMM PF00437 YP_106188.1 identified by similarity to GP:15667831; match to protein family HMM PF00263; match to protein family HMM TIGR02520 YP_106189.1 identified by similarity to GP:15667829 YP_106190.1 identified by similarity to SP:Q06581; match to protein family HMM PF00437 YP_106192.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_106193.1 identified by match to protein family HMM PF02518 YP_106195.1 identified by similarity to GP:6066706 YP_106196.1 identified by similarity to GB:AAS03429.1 YP_106198.1 identified by similarity to SP:P31778; match to protein family HMM PF00165 YP_106199.1 identified by similarity to GP:14719880 YP_106202.1 identified by similarity to GP:4206079; match to protein family HMM PF01313; match to protein family HMM TIGR01403 YP_106203.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response YP_106204.1 identified by similarity to GB:AAD11410.1; match to protein family HMM PF01052; match to protein family HMM TIGR02551 YP_106205.1 identified by similarity to GP:14719876; match to protein family HMM PF00771; match to protein family HMM TIGR01399 YP_106206.1 identified by similarity to GP:14719875; match to protein family HMM PF01312; match to protein family HMM TIGR01404 YP_106207.1 identified by match to protein family HMM TIGR02561 YP_106208.1 identified by similarity to GP:9711587; match to protein family HMM TIGR02558 YP_106209.1 identified by match to protein family HMM TIGR02560 YP_106210.1 identified by similarity to GP:14719870; match to protein family HMM TIGR02499 YP_106211.1 identified by similarity to GP:14719869; match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546 YP_106212.1 identified by similarity to GP:14719867; match to protein family HMM PF01311; match to protein family HMM PF01391; match to protein family HMM TIGR01401 YP_106214.1 identified by similarity to GB:CAD17252.1 YP_106215.1 identified by similarity to GP:1890776 YP_106216.1 identified by similarity to SP:O30409; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733 YP_106217.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_106218.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_106219.1 identified by similarity to GP:3510629; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_106220.1 identified by similarity to SP:P56744; match to protein family HMM PF00202; match to protein family HMM PF07690; match to protein family HMM TIGR00709 YP_106222.1 catalyzes the formation of acetate from pyruvate YP_106223.1 identified by match to protein family HMM PF02550 YP_106224.1 identified by match to protein family HMM PF01575 YP_106225.1 identified by similarity to SP:P77770 YP_106226.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_106227.1 identified by similarity to GB:AAN47277.1 YP_338511.1 identified by similarity to SP:P72131 YP_106228.1 identified by match to protein family HMM PF07690 YP_106229.1 identified by similarity to PIR:F83482 YP_106230.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_106232.1 identified by match to protein family HMM PF00072 YP_106234.1 identified by match to protein family HMM PF00652; match to protein family HMM PF01344 YP_106236.1 identified by similarity to GP:17429312 YP_106237.1 identified by match to protein family HMM PF01734 YP_106238.1 identified by similarity to GP:21723492 YP_106239.1 identified by similarity to GP:21622608; match to protein family HMM PF00067; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_106241.1 identified by similarity to GP:2613096; match to protein family HMM PF07690 YP_106243.1 identified by similarity to GB:CAD16595.1 YP_106245.1 identified by similarity to SP:P14081; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00475 YP_106246.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_106247.1 identified by similarity to SP:P13024; match to protein family HMM PF04216; match to protein family HMM TIGR01562 YP_106248.1 identified by match to protein family HMM TIGR01583 YP_106249.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01582 YP_106250.1 identified by similarity to GP:17427154; match to protein family HMM PF02698 YP_106251.1 identified by match to protein family HMM TIGR01409 YP_106253.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_106254.1 identified by similarity to SP:P54989 YP_106255.1 identified by match to protein family HMM PF00296 YP_106256.1 identified by match to protein family HMM PF00497 YP_106257.1 identified by match to protein family HMM PF00583 YP_106258.1 identified by match to protein family HMM PF04952 YP_106262.1 identified by similarity to SP:P32146; match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_106263.1 identified by similarity to SP:Q04064; match to protein family HMM PF00267 YP_106265.1 identified by similarity to GP:1773080; match to protein family HMM PF00216 YP_106266.1 identified by match to protein family HMM PF01757 YP_106267.1 identified by similarity to GP:1628575; match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_106269.1 identified by match to protein family HMM PF00534 YP_106270.1 identified by similarity to SP:P37781; match to protein family HMM PF01943 YP_106272.1 identified by match to protein family HMM PF01757 YP_106273.1 identified by similarity to SP:Q51366; match to protein family HMM TIGR01472 YP_106274.1 identified by similarity to GP:11464870; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_106276.1 catalyzes the conversion of O-succinylhomoserine into homocysteine YP_106277.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_106278.1 identified by match to protein family HMM PF02674 YP_106279.1 identified by match to protein family HMM PF05036 YP_106280.2 identified by similarity to SP:P08192; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01499 YP_106281.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_106282.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_106283.1 identified by similarity to SP:P14751; match to protein family HMM PF01555 YP_106284.2 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_106285.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_106286.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_106287.1 identified by similarity to GB:BAC65261.1 YP_106288.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_106289.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_106290.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_106291.1 identified by similarity to SP:P56549; match to protein family HMM PF08085 YP_106292.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_106294.1 identified by similarity to PIR:F98302 YP_106296.1 identified by similarity to SP:P42179; match to protein family HMM PF01037 YP_106297.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1 YP_106299.1 identified by similarity to GB:CAE33179.1 YP_106300.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_106301.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_106302.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_106303.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_106304.1 identified by similarity to OMNI:NTL01RS1992; match to protein family HMM PF03937 YP_106305.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_106306.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_106307.1 identified by similarity to SP:P10445; match to protein family HMM PF01127 YP_106308.1 identified by similarity to SP:P10446; match to protein family HMM PF01127 YP_106309.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_106310.1 catalyzes the oxidation of malate to oxaloacetate YP_106311.1 identified by similarity to GP:17429017 YP_106312.1 identified by similarity to GP:17429019 YP_106313.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C YP_106314.1 catalyzes the conversion of citrate to isocitrate YP_106315.1 identified by similarity to GP:39738; match to protein family HMM PF05860; match to protein family HMM TIGR01901 YP_106316.1 identified by similarity to SP:P16465; match to protein family HMM PF03865 YP_106317.1 identified by similarity to GB:CAA60622.1 YP_106318.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_106319.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_106320.1 identified by match to protein family HMM PF06812 YP_106322.1 identified by similarity to GP:3249555; match to protein family HMM PF02550 YP_106323.1 identified by match to protein family HMM PF01066 YP_106324.1 The C-terminal half of this gene overlaps the downstream gene.; identified by match to protein family HMM PF03171 YP_106325.1 identified by match to protein family HMM TIGR00374 YP_106326.1 identified by similarity to OMNI:CC1152 YP_106327.1 identified by similarity to SP:P29247; match to protein family HMM TIGR02320 YP_106328.1 identified by similarity to SP:O86938 YP_106329.1 identified by similarity to GB:AAL83669.1; match to protein family HMM PF00266 YP_106330.1 identified by match to protein family HMM PF01965 YP_106331.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_106332.1 identified by similarity to GP:17430601 YP_106333.1 identified by similarity to SP:P32482; match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_106334.1 identified by match to protein family HMM PF00392 YP_106335.1 identified by match to protein family HMM PF01841 YP_106336.1 identified by similarity to OMNI:NTL03PA04928; match to protein family HMM PF04169 YP_106337.1 identified by match to protein family HMM PF01841 YP_106338.1 identified by match to protein family HMM PF01841 YP_338519.1 identified by similarity to OMNI:NTL02ML0572 YP_106340.1 identified by match to protein family HMM PF00881 YP_106342.1 identified by similarity to GP:6466167; match to protein family HMM PF03067 YP_106343.1 identified by similarity to GP:5814209; match to protein family HMM PF00578 YP_338521.1 identified by similarity to SP:O82864 YP_106344.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_106345.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_338522.1 This gene is disrupted by an IS407 element; identified by similarity to PIR:T00225 YP_106346.1 identified by match to protein family HMM PF00474 YP_106348.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_106349.1 identified by similarity to GP:27352031; match to protein family HMM PF03350; match to protein family HMM TIGR00645 YP_106350.1 identified by similarity to SP:P00923; match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723 YP_106351.1 identified by similarity to SP:P22759; match to protein family HMM PF00210; match to protein family HMM TIGR00754 YP_106352.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_106353.1 identified by similarity to SP:P13655; match to protein family HMM PF04324 YP_106354.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_106355.1 identified by match to protein family HMM PF01618 YP_106356.1 identified by match to protein family HMM PF02472 YP_106357.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_106359.1 identified by similarity to GP:5821733; match to protein family HMM PF00583 YP_106360.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365 YP_106361.1 identified by match to protein family HMM PF00107 YP_106362.1 identified by similarity to SP:P37769; match to protein family HMM PF00106 YP_106363.1 identified by match to protein family HMM PF00532 YP_106364.1 identified by match to protein family HMM PF02653 YP_106365.1 identified by similarity to SP:P04983; match to protein family HMM PF00005 YP_106366.1 identified by similarity to SP:P37351; match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_106367.1 identified by match to protein family HMM PF04198 YP_106368.1 identified by similarity to SP:Q04064; match to protein family HMM PF00267 YP_106370.1 identified by match to protein family HMM PF00528 YP_106372.1 identified by similarity to SP:P77795; match to protein family HMM PF00005 YP_106373.1 identified by match to protein family HMM PF00528 YP_106375.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_106377.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786 YP_106378.1 identified by similarity to SP:Q56990; match to protein family HMM PF05171 YP_106379.1 identified by similarity to SP:Q56991; match to protein family HMM PF01497 YP_106380.1 identified by similarity to SP:Q56992; match to protein family HMM PF01032 YP_106381.1 with HmuTU is involved in the import of hemin YP_106382.1 identified by match to protein family HMM PF03458 YP_106383.1 identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_106384.1 specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_106385.1 identified by similarity to SP:P75823 YP_106386.1 identified by similarity to OMNI:NTL03PA03930; match to protein family HMM PF01654 YP_106387.1 identified by similarity to OMNI:NTL03PA03929; match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_106390.1 identified by match to protein family HMM PF00494 YP_106391.1 identified by similarity to SP:P37479; match to protein family HMM PF00903 YP_106394.1 identified by similarity to GP:17427908; match to protein family HMM PF05359 YP_106396.1 identified by similarity to OMNI:NTL01RS0254; match to protein family HMM PF06742; match to protein family HMM PF06863 YP_106398.1 identified by similarity to GP:22003413; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_106399.1 identified by similarity to GP:15980019 YP_106400.1 identified by match to protein family HMM PF00583 YP_106402.1 identified by match to protein family HMM PF02308 YP_106403.1 identified by similarity to OMNI:NTL01RS3058; match to protein family HMM PF07221 YP_106404.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_106405.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203 YP_106407.1 identified by match to protein family HMM PF04055 YP_106409.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_338529.1 identified by similarity to GP:17430586 YP_106410.1 Catalyzes the conversion of citrate to isocitrate YP_106411.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity YP_106412.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_106413.1 identified by similarity to SP:P74839; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM TIGR01199; match to protein family HMM TIGR02329 YP_106414.1 identified by similarity to SP:P02942; match to protein family HMM PF00015; match to protein family HMM PF00672 YP_106418.1 identified by similarity to SP:P52279; match to protein family HMM PF00561; match to protein family HMM TIGR01249 YP_106419.1 identified by similarity to SP:P15558; match to protein family HMM PF01804 YP_106420.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_106421.1 identified by match to protein family HMM PF03746 YP_106422.1 Catalyzes the formation of malnoyl-CoA, which in turn controls the rate of fatty acid metabolism YP_106423.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_106424.1 identified by similarity to OMNI:NTL03PA00496; match to protein family HMM PF02682 YP_106425.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_106429.1 identified by match to protein family HMM PF00903 YP_106430.1 identified by similarity to GP:15777939; match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_106432.1 identified by match to protein family HMM PF02525 YP_106433.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_106434.1 identified by similarity to PIR:AH2060 YP_106437.1 identified by similarity to GB:CAE31305.1 YP_106439.1 identified by similarity to GP:19916298; match to protein family HMM PF00805 YP_106440.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_106441.2 identified by match to protein family HMM PF06812 YP_106442.1 identified by match to protein family HMM PF05947 YP_106444.1 identified by match to protein family HMM PF05591 YP_338537.1 identified by similarity to GP:15130929 YP_106445.1 identified by match to protein family HMM PF00691 YP_106447.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_338540.1 identified by similarity to GB:CAB65144.1 YP_106448.1 identified by similarity to SP:P28304; match to protein family HMM PF00107 YP_106449.1 identified by similarity to SP:O05272; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_106450.1 identified by similarity to SP:O30372; match to protein family HMM PF03241 YP_106451.1 identified by similarity to GP:3212173 YP_106452.1 identified by similarity to GP:3212172 YP_106454.1 identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180 YP_338541.1 identified by similarity to GB:AAQ57956.1 YP_106457.1 identified by match to protein family HMM PF00106 YP_106458.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_106459.1 identified by similarity to SP:P29011 YP_106460.1 identified by similarity to SP:P37902; match to protein family HMM PF00497 YP_106462.1 identified by match to protein family HMM PF00487 YP_106465.1 identified by similarity to GP:1790869; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_106466.1 identified by similarity to GP:535810; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_106467.1 identified by similarity to GP:15559196 YP_106468.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA YP_106470.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_106471.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_106473.1 identified by match to protein family HMM PF01614 YP_106474.1 identified by similarity to SP:O53078; match to protein family HMM PF05488 YP_106475.1 identified by similarity to SP:Q04064; match to protein family HMM PF00267 YP_106476.1 identified by match to protein family HMM PF03972; match to protein family HMM TIGR01409 YP_106477.1 identified by similarity to GB:AAG09640.1 YP_106479.1 identified by match to protein family HMM TIGR00688 YP_106480.1 catalyzes the hydrolysis of acylphosphate YP_106481.1 identified by similarity to SP:P73212; match to protein family HMM PF07993 YP_106483.1 identified by match to protein family HMM PF00535 YP_106485.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_106486.1 identified by match to protein family HMM PF04055 YP_106487.1 identified by similarity to SP:P56739 YP_106489.1 catalyzes the formation of 5-aminovulinate from (S)-4-amino-5-oxopentanoate YP_106491.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_106494.1 identified by match to protein family HMM PF00106 YP_106496.1 identified by similarity to OMNI:NTL02ML1897 YP_106497.1 identified by similarity to SP:P40288; match to protein family HMM PF00106 YP_106499.1 identified by match to protein family HMM PF00534 YP_106500.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993 YP_106501.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_106502.1 identified by similarity to GB:CAE33341.1 YP_106503.1 identified by match to protein family HMM PF00535 YP_106504.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_338545.1 identified by match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_106506.1 identified by similarity to GP:599920; match to protein family HMM PF01075 YP_106507.1 identified by match to protein family HMM PF00535 YP_106508.1 identified by similarity to SP:P55474; match to protein family HMM PF02543 YP_106509.1 identified by similarity to GP:4455728; match to protein family HMM PF01075 YP_106510.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 YP_106511.1 identified by similarity to OMNI:NTL01HS01032; match to protein family HMM PF00106 YP_106513.1 identified by match to protein family HMM PF00072 YP_106514.1 Approximately 500nt at the 3' end of this gene overlap a well-defined response regulator gene. This suggests a mutation resulting in the loss of a stop codon.; identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02518 YP_106515.1 identified by match to protein family HMM PF04972 YP_106516.1 identified by match to protein family HMM PF02666 YP_106517.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_106519.1 identified by similarity to SP:P77161; match to protein family HMM PF03446 YP_106520.1 identified by similarity to SP:P54989 YP_106522.1 identified by match to protein family HMM PF01648 YP_106523.1 identified by match to protein family HMM PF07690 YP_106525.1 identified by similarity to SP:P54994; match to protein family HMM PF01613 YP_106528.1 E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_106529.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA YP_106530.1 identified by similarity to SP:P09061; match to protein family HMM PF02779; match to protein family HMM PF02780 YP_106531.1 identified by similarity to SP:P09060; match to protein family HMM PF00676 YP_106536.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_106538.1 This gene assignment is based partly on a multiple alignment.; identified by similarity to SP:P12676; match to protein family HMM PF00037 YP_106539.1 identified by similarity to GP:5931581; match to protein family HMM PF00070; match to protein family HMM PF01734; match to protein family HMM PF07992 YP_106540.1 identified by match to protein family HMM PF01258 YP_106542.1 identified by similarity to GP:3641686; match to protein family HMM PF06850; match to protein family HMM TIGR01849 YP_106543.1 class I; catalyzes the formation of deoxyribonucleotides from their corresponding ribonucleotides YP_106546.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740 YP_106548.1 identified by match to protein family HMM PF00571 YP_338549.1 identified by similarity to GB:AAR35799.1 YP_106549.1 identified by match to protein family HMM PF00011 YP_106551.1 identified by similarity to SP:Q00594; match to protein family HMM PF00501 YP_106553.1 identified by match to protein family HMM PF00196 YP_106555.1 identified by similarity to SP:P28304; match to protein family HMM PF00107 YP_106556.1 identified by similarity to SP:P37610; match to protein family HMM PF02668 YP_106557.1 identified by match to protein family HMM PF05853 YP_106558.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_106559.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_106560.1 identified by match to protein family HMM PF00037 YP_106564.1 identified by match to protein family HMM PF01522 YP_106566.1 identified by similarity to OMNI:NTL01FN1032 YP_106567.1 identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912 YP_106571.1 identified by similarity to SP:Q04064; match to protein family HMM PF00267 YP_106573.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_106575.1 identified by match to protein family HMM PF00583 YP_106576.1 identified by similarity to OMNI:NTL03PA02530 YP_106577.1 identified by match to protein family HMM PF01523 YP_106578.1 identified by similarity to SP:P77622 YP_106579.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_106580.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_106581.1 identified by similarity to OMNI:NTL01RS2573; match to protein family HMM PF01610 YP_106582.1 identified by similarity to GP:17427840; match to protein family HMM PF00665 YP_106583.1 identified by similarity to SP:P24580; match to protein family HMM PF01527 YP_106584.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_106585.1 identified by similarity to GP:17429981; match to protein family HMM PF05494 YP_338554.1 identified by similarity to GP:9946760 YP_106586.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_106588.1 identified by similarity to SP:P22088; match to protein family HMM PF00561 YP_106589.1 identified by match to protein family HMM PF01648 YP_106591.1 identified by similarity to OMNI:NTL02EC1373 YP_106592.1 identified by match to protein family HMM PF02687 YP_106593.1 identified by match to protein family HMM PF00005 YP_106594.1 identified by match to protein family HMM PF00743 YP_106595.1 identified by similarity to SP:P29980; match to protein family HMM PF00067 YP_106596.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF02801 YP_106597.1 identified by match to protein family HMM PF00698 YP_106599.1 identified by similarity to OMNI:NTL01RS2959; match to protein family HMM PF04333 YP_106600.1 identified by similarity to GB:CAE51627.1 YP_106601.1 identified by match to protein family HMM PF00202 YP_106603.1 similar to ATP-binding component of ABC transporters YP_106604.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine YP_106605.1 similar to periplasmic-binding component of ABC transporters YP_106606.1 identified by similarity to GB:BAC48270.1 YP_106607.1 identified by match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787 YP_106609.1 identified by similarity to SP:P37294; match to protein family HMM PF00494 YP_106612.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_106613.1 identified by similarity to OMNI:VC1083; match to protein family HMM PF04509 YP_106614.1 identified by match to protein family HMM PF00072 YP_106616.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_106617.1 identified by match to protein family HMM PF03358 YP_106618.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_106620.1 identified by similarity to SP:P37311; match to protein family HMM PF03960; match to protein family HMM TIGR00014 YP_106621.1 identified by match to protein family HMM PF01656 YP_106622.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_106623.1 identified by similarity to GP:3192745; match to protein family HMM PF01609 YP_106624.1 identified by similarity to GP:18029507