-- dump date   	20140619_013739
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_001023835.1	identified by match to protein family HMM PF00665
YP_001023836.1	identified by match to protein family HMM PF01527
YP_001023837.1	identified by match to protein family HMM PF03928
YP_001023839.1	identified by match to protein family HMM PF03239
YP_001023842.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_001023843.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_001023844.1	identified by match to protein family HMM PF01609
YP_001023845.1	catalyzes the formation of acetoacetate from 3-hydroxybutyrate
YP_001023846.1	identified by match to protein family HMM PF00248
YP_001023847.1	identified by match to protein family HMM PF04378
YP_001023849.1	identified by match to protein family HMM PF01527
YP_001023850.1	identified by match to protein family HMM PF00665
YP_001023852.1	identified by match to protein family HMM PF00665
YP_001023853.1	identified by match to protein family HMM PF01527
YP_001023855.1	catalyzes the formation of glutamate from glutamine
YP_001023856.1	identified by match to protein family HMM TIGR01409
YP_001023857.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001023859.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001023860.2	identified by match to protein family HMM PF01734; match to protein family HMM PF07244
YP_001023861.1	identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904
YP_001023863.1	identified by match to protein family HMM PF01966
YP_001023864.1	identified by match to protein family HMM PF06202
YP_001023869.1	identified by match to protein family HMM PF00903
YP_001023870.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_001023871.1	identified by match to protein family HMM PF05988
YP_001023875.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001023876.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001023877.1	identified by match to protein family HMM PF01380
YP_001023880.1	identified by match to protein family HMM PF00581
YP_001023881.1	upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism
YP_001023884.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687
YP_001023886.1	identified by match to protein family HMM PF04993
YP_001023887.1	identified by match to protein family HMM PF07298
YP_001023891.1	catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue
YP_001023892.1	identified by match to protein family HMM PF00450
YP_001023893.1	identified by match to protein family HMM PF01527
YP_001023894.1	identified by match to protein family HMM PF00665
YP_001023897.1	identified by match to protein family HMM PF06224
YP_001023899.1	identified by match to protein family HMM PF07690
YP_001023901.3	identified by match to protein family HMM PF01204
YP_001023905.1	identified by match to protein family HMM PF00196
YP_001023908.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_001023911.1	identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR01409
YP_001023912.1	identified by match to protein family HMM PF00111; match to protein family HMM PF01799
YP_001023913.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06719
YP_001023917.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001023918.1	identified by match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001023921.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001023922.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001023923.1	identified by match to protein family HMM PF06629
YP_001023924.1	identified by match to protein family HMM PF01370; match to protein family HMM PF07993
YP_001023925.1	identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337
YP_001023926.1	identified by match to protein family HMM PF01557; match to protein family HMM TIGR02305
YP_001023927.1	identified by match to protein family HMM PF01557; match to protein family HMM TIGR02303
YP_001023928.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR02299
YP_001023929.1	identified by match to protein family HMM PF02900; match to protein family HMM TIGR02298
YP_001023930.1	identified by match to protein family HMM PF02962
YP_001023931.1	identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312
YP_001023932.1	identified by match to protein family HMM PF00165
YP_001023934.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001023935.1	identified by match to protein family HMM PF00267
YP_001023937.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402
YP_001023938.1	identified by match to protein family HMM PF00528
YP_001023939.1	identified by match to protein family HMM PF01547
YP_001023940.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001023941.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521
YP_001023942.1	identified by match to protein family HMM PF03473
YP_001023943.1	identified by match to protein family HMM PF00665
YP_001023944.1	identified by match to protein family HMM PF01527
YP_001023945.1	identified by match to protein family HMM PF05231
YP_001023947.1	identified by match to protein family HMM PF00440
YP_001023949.1	identified by match to protein family HMM PF01965
YP_001023951.1	identified by match to protein family HMM PF00724
YP_001023954.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_001023956.1	identified by match to protein family HMM PF01594
YP_001023958.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001023959.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001023962.1	identified by match to protein family HMM PF00512
YP_001023963.1	identified by match to protein family HMM PF00027
YP_001023964.1	activates fatty acids by binding to coenzyme A
YP_001023966.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001023968.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001023969.1	identified by match to protein family HMM PF00535; match to protein family HMM PF07238
YP_001023977.1	identified by match to protein family HMM PF07883
YP_001023981.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001023982.1	catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate
YP_001023983.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_001023985.1	identified by match to protein family HMM PF00665
YP_001023986.1	identified by match to protein family HMM PF01527
YP_001023988.1	identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526
YP_001023992.1	identified by match to protein family HMM PF00313
YP_001023997.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001023998.1	identified by match to protein family HMM PF02566
YP_001023999.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_001024000.1	identified by match to protein family HMM PF00072
YP_001024001.1	identified by match to protein family HMM PF00072; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM PF08447; match to protein family HMM TIGR00229
YP_001024002.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001024003.1	identified by match to protein family HMM PF05853
YP_001024004.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_001024005.1	catalyzes the formation of betaine from betaine aldehyde
YP_001024006.1	HTH-type; bet1; Repressor involved in choline regulation of the bet genes
YP_001024007.1	identified by match to protein family HMM PF01527
YP_001024008.1	identified by match to protein family HMM PF00665
YP_001024010.1	identified by match to protein family HMM PF00201; match to protein family HMM PF03033
YP_001024011.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001024014.1	identified by match to protein family HMM TIGR01556
YP_001024016.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001024017.1	identified by match to protein family HMM PF00529
YP_001024018.1	identified by match to protein family HMM PF00326; match to protein family HMM PF02897
YP_001024020.1	identified by match to protein family HMM PF00581
YP_001024021.1	identified by match to protein family HMM PF00132
YP_001024022.1	identified by match to protein family HMM PF01381
YP_001024024.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979
YP_001024025.1	identified by match to protein family HMM PF01292
YP_001024027.1	identified by match to protein family HMM PF01022
YP_001024028.1	identified by match to protein family HMM PF04143
YP_001024029.1	identified by match to protein family HMM PF04143
YP_001024030.1	identified by match to protein family HMM PF00583
YP_001024034.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_001024035.1	identified by match to protein family HMM PF03150
YP_001024036.1	identified by match to protein family HMM PF00149
YP_001024037.1	identified by match to protein family HMM PF04909
YP_001024038.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001024039.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_001024040.1	identified by match to protein family HMM PF07690
YP_001024042.1	identified by match to protein family HMM PF01037
YP_001024043.1	catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate
YP_001024045.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_001024046.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001024048.1	identified by match to protein family HMM PF07045
YP_001024049.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_001024050.1	identified by match to protein family HMM PF07973
YP_001024051.1	identified by match to protein family HMM PF00892
YP_001024052.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_001024055.1	identified by match to protein family HMM PF04185
YP_001024058.1	identified by match to protein family HMM PF00144
YP_001024059.1	identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842
YP_001024060.1	identified by match to protein family HMM PF01380
YP_001024061.1	identified by match to protein family HMM PF01112
YP_001024062.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352
YP_001024063.1	identified by match to protein family HMM PF00496
YP_001024065.1	identified by match to protein family HMM PF00528
YP_001024066.1	identified by match to protein family HMM PF00528
YP_001024067.1	identified by match to protein family HMM PF03576
YP_001024068.1	identified by match to protein family HMM PF04951
YP_001024069.1	identified by match to protein family HMM PF00775; match to protein family HMM TIGR02423
YP_001024070.1	identified by match to protein family HMM PF00775; match to protein family HMM TIGR02422
YP_001024071.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR02424
YP_001024075.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001024078.1	identified by match to protein family HMM PF01596
YP_001024080.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive
YP_001024081.1	identified by match to protein family HMM PF04946
YP_001024084.1	identified by match to protein family HMM PF00324
YP_001024087.1	identified by match to protein family HMM PF01527
YP_001024088.1	identified by match to protein family HMM PF00665
YP_001024089.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF08494
YP_001024093.1	identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066
YP_001024095.1	identified by match to protein family HMM PF02321
YP_001024099.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412
YP_001024103.1	identified by match to protein family HMM PF03976
YP_001024107.1	identified by match to protein family HMM PF01527
YP_001024108.1	identified by match to protein family HMM PF00665
YP_001024109.1	identified by match to protein family HMM PF00440
YP_001024110.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01593
YP_001024112.1	identified by match to protein family HMM PF00892
YP_001024113.1	identified by match to protein family HMM PF01205; match to protein family HMM PF09186
YP_001024114.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_001024117.1	identified by match to protein family HMM PF00501
YP_001024118.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_001024119.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_001024120.1	identified by match to protein family HMM PF00550
YP_001024122.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM TIGR01733
YP_001024123.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00550; match to protein family HMM PF08659
YP_001024124.1	identified by match to protein family HMM PF01527
YP_001024125.1	identified by match to protein family HMM PF00665
YP_001024127.1	identified by match to protein family HMM PF01609
YP_001024129.1	identified by match to protein family HMM PF07690
YP_001024130.1	identified by match to protein family HMM PF03621
YP_001024132.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_001024134.1	identified by match to protein family HMM PF00691
YP_001024135.1	identified by match to protein family HMM PF05650
YP_001024141.1	identified by match to protein family HMM PF00465
YP_001024142.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001024144.1	identified by match to protein family HMM PF02515
YP_001024146.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001024147.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001024149.1	identified by match to protein family HMM PF03466
YP_001024150.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001024151.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_001024152.1	identified by match to protein family HMM PF00850
YP_001024155.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_001024157.1	identified by match to protein family HMM PF00072; match to protein family HMM PF03861
YP_001024158.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469
YP_001024161.1	identified by match to protein family HMM PF07690
YP_001024162.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374
YP_001024163.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378
YP_001024164.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00384; match to protein family HMM PF00667; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_001024167.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_001024168.1	identified by match to protein family HMM PF00144; match to protein family HMM PF00768
YP_001024172.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312
YP_001024173.1	identified by match to protein family HMM PF00165
YP_001024174.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402
YP_001024175.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001024176.1	identified by match to protein family HMM PF00528
YP_001024177.1	identified by match to protein family HMM PF00528
YP_001024178.1	identified by match to protein family HMM PF01547
YP_001024181.1	identified by match to protein family HMM PF07690
YP_001024182.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_001024185.1	identified by match to protein family HMM PF01544
YP_001024186.1	identified by match to protein family HMM PF06983
YP_001024193.1	identified by match to protein family HMM PF00999; match to protein family HMM PF02254
YP_001024194.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_001024195.1	identified by match to protein family HMM PF00532
YP_001024197.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_001024198.1	identified by match to protein family HMM PF05344
YP_001024200.1	identified by match to protein family HMM PF00589
YP_001024201.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001024202.1	identified by match to protein family HMM PF00400
YP_001024203.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_001024205.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001024206.1	identified by match to protein family HMM PF00873
YP_001024207.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_001024213.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_001024215.1	identified by match to protein family HMM PF01694
YP_001024217.1	identified by match to protein family HMM PF00324
YP_001024218.1	identified by match to protein family HMM PF04073
YP_001024219.1	identified by match to protein family HMM PF04008
YP_001024223.1	identified by match to protein family HMM PF02321
YP_001024224.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_001024225.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914
YP_001024226.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387
YP_001024227.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386
YP_001024229.1	identified by match to protein family HMM PF01527
YP_001024230.1	identified by match to protein family HMM PF00665
YP_001024233.1	identified by match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001024237.1	identified by match to protein family HMM PF00532
YP_001024238.1	identified by match to protein family HMM PF00005
YP_001024239.1	identified by match to protein family HMM PF02653
YP_001024240.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783
YP_001024241.1	identified by match to protein family HMM PF04773
YP_001024242.1	identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_001024244.1	identified by match to protein family HMM PF03640
YP_001024245.1	identified by match to protein family HMM PF04264
YP_001024247.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_001024249.1	identified by match to protein family HMM PF00165
YP_001024251.1	identified by match to protein family HMM PF01557
YP_001024252.1	identified by match to protein family HMM PF02517
YP_001024253.1	identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427
YP_001024255.1	identified by match to protein family HMM PF01699
YP_001024257.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001024259.1	identified by match to protein family HMM PF00571; match to protein family HMM PF04982
YP_001024260.1	identified by match to protein family HMM PF01047
YP_001024261.1	identified by match to protein family HMM PF00571; match to protein family HMM PF00654
YP_001024263.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001024264.1	identified by match to protein family HMM PF01266
YP_001024267.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM PF08659
YP_001024268.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801
YP_001024269.1	identified by match to protein family HMM PF00999
YP_001024270.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_001024273.1	identified by match to protein family HMM PF01610
YP_001024274.1	involved in polyketide synthesis
YP_001024275.1	involved in polyketide production
YP_001024276.1	Acyl carrier proteins are involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; this ACP may be involved in the biosynthesis of lipopeptide antibiotics
YP_001024277.1	involved in polyketide production
YP_001024278.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721
YP_001024279.1	identified by match to protein family HMM PF00355
YP_001024280.1	identified by match to protein family HMM PF00165
YP_001024281.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001024282.1	identified by match to protein family HMM PF00199
YP_001024284.1	identified by match to protein family HMM PF04397
YP_001024285.1	identified by match to protein family HMM PF00072
YP_001024286.1	identified by match to protein family HMM PF01527
YP_001024287.1	identified by match to protein family HMM PF00665
YP_001024288.1	identified by match to protein family HMM PF02518; match to protein family HMM PF06580
YP_001024290.1	identified by match to protein family HMM PF07690
YP_001024294.1	identified by match to protein family HMM PF04828
YP_001024297.1	identified by match to protein family HMM PF00005
YP_001024298.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001024299.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001024302.1	identified by match to protein family HMM PF00267
YP_001024303.1	identified by match to protein family HMM PF07681
YP_001024304.1	identified by match to protein family HMM PF00034
YP_001024305.1	identified by match to protein family HMM PF00732; match to protein family HMM PF01266
YP_001024306.1	identified by match to protein family HMM TIGR01409
YP_001024309.1	identified by match to protein family HMM PF00082
YP_001024311.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524
YP_001024314.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001024315.1	identified by match to protein family HMM PF00384; match to protein family HMM TIGR01701
YP_001024316.1	identified by match to protein family HMM PF05249
YP_001024317.1	identified by match to protein family HMM PF05360
YP_001024318.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_001024319.1	identified by match to protein family HMM PF00190; match to protein family HMM PF07883
YP_001024320.1	identified by match to protein family HMM PF00496
YP_001024322.1	identified by match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601
YP_001024325.1	identified by match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_001024326.1	identified by match to protein family HMM PF08786
YP_001024327.1	identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646
YP_001024333.1	catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis
YP_001024334.1	identified by match to protein family HMM PF00496
YP_001024335.1	identified by match to protein family HMM PF00528
YP_001024336.1	identified by match to protein family HMM PF00528
YP_001024337.1	identified by match to protein family HMM PF00005
YP_001024338.1	identified by match to protein family HMM PF00005
YP_001024341.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001024343.1	identified by match to protein family HMM PF00144
YP_001024344.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_001024347.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001024349.1	identified by match to protein family HMM PF00267
YP_001024352.1	identified by match to protein family HMM PF00756
YP_001024353.1	catalyzes the formation of L-proline from L-ornithine
YP_001024354.1	identified by match to protein family HMM PF02627
YP_001024357.1	identified by match to protein family HMM PF00561
YP_001024358.1	identified by match to protein family HMM PF02254; match to protein family HMM PF07885
YP_001024359.1	identified by match to protein family HMM PF01266; match to protein family HMM PF07992
YP_001024360.1	identified by match to protein family HMM PF08667
YP_001024364.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001024366.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001024370.1	identified by match to protein family HMM PF00583
YP_001024371.1	identified by match to protein family HMM PF00376
YP_001024372.1	identified by match to protein family HMM TIGR01728
YP_001024373.1	identified by match to protein family HMM PF07947
YP_001024375.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001024377.1	identified by match to protein family HMM PF00561
YP_001024379.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001024380.1	identified by match to protein family HMM PF01527
YP_001024381.1	identified by match to protein family HMM PF00665
YP_001024383.1	identified by match to protein family HMM PF02082; match to protein family HMM PF08279
YP_001024384.1	identified by match to protein family HMM PF06475
YP_001024386.1	identified by match to protein family HMM PF00797
YP_001024391.1	catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine
YP_001024392.1	identified by match to protein family HMM PF01037
YP_001024394.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_001024397.1	identified by match to protein family HMM PF00691; match to protein family HMM PF04355
YP_001024398.1	identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662
YP_001024400.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001024401.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_001024402.1	identified by match to protein family HMM PF00903
YP_001024403.1	identified by match to protein family HMM PF00171
YP_001024404.1	catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis
YP_001024405.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_001024406.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001024407.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001024408.1	identified by match to protein family HMM PF00561
YP_001024409.1	identified by match to protein family HMM PF07883
YP_001024410.1	member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria
YP_001024411.1	identified by match to protein family HMM PF00355
YP_001024413.1	identified by match to protein family HMM PF00355
YP_001024414.1	identified by match to protein family HMM PF00267
YP_001024416.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001024417.1	identified by match to protein family HMM PF03171
YP_001024418.1	identified by match to protein family HMM PF00881
YP_001024419.1	identified by match to protein family HMM PF00149
YP_001024422.1	identified by match to protein family HMM PF02308
YP_001024423.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472
YP_001024425.1	identified by match to protein family HMM PF00765
YP_001024427.1	identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505
YP_001024428.1	identified by match to protein family HMM PF00571
YP_001024430.1	identified by match to protein family HMM PF01272
YP_001024431.1	identified by match to protein family HMM PF00267
YP_001024435.1	identified by match to protein family HMM PF00724
YP_001024436.1	identified by match to protein family HMM PF00583
YP_001024437.1	identified by match to protein family HMM PF01810
YP_001024439.1	identified by match to protein family HMM PF00267
YP_001024440.1	identified by match to protein family HMM PF00165
YP_001024442.1	identified by match to protein family HMM PF00324
YP_001024443.1	identified by match to protein family HMM PF00202
YP_001024444.1	identified by match to protein family HMM PF00171
YP_001024446.1	identified by match to protein family HMM PF00196
YP_001024447.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001024449.1	identified by match to protein family HMM PF00248
YP_001024453.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001024454.1	identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196
YP_001024458.1	identified by match to protein family HMM PF01527
YP_001024459.1	identified by match to protein family HMM PF00665
YP_001024460.1	identified by match to protein family HMM PF03895; match to protein family HMM PF05662
YP_001024466.1	identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_001024467.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001024468.1	identified by match to protein family HMM PF01039
YP_001024469.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001024470.1	identified by match to protein family HMM PF00440
YP_001024474.1	identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732
YP_001024476.1	identified by match to protein family HMM PF00278; match to protein family HMM PF00355; match to protein family HMM PF02784
YP_001024478.1	identified by match to protein family HMM PF02373
YP_001024482.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001024483.1	identified by match to protein family HMM PF00583
YP_001024485.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001024486.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001024491.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00970; match to protein family HMM PF03929
YP_001024492.1	identified by match to protein family HMM PF02424
YP_001024493.1	identified by match to protein family HMM PF00171
YP_001024494.1	identified by match to protein family HMM PF00155
YP_001024496.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001024497.1	identified by match to protein family HMM TIGR01552
YP_001024499.1	identified by match to protein family HMM PF01266
YP_001024500.1	identified by match to protein family HMM PF00440
YP_001024504.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_001024506.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR01409
YP_001024507.1	identified by match to protein family HMM PF01232; match to protein family HMM PF08125
YP_001024508.1	identified by match to protein family HMM PF00392
YP_001024509.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_001024510.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001024512.1	identified by match to protein family HMM PF00892
YP_001024513.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_001024515.1	identified by match to protein family HMM PF06792
YP_001024518.1	identified by match to protein family HMM PF00034; match to protein family HMM PF00127; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR02376
YP_001024519.1	identified by match to protein family HMM PF03781
YP_001024520.1	identified by match to protein family HMM PF02630
YP_001024522.1	identified by match to protein family HMM PF01471; match to protein family HMM PF01510
YP_001024525.1	identified by match to protein family HMM PF05658; match to protein family HMM PF05662
YP_001024527.1	identified by match to protein family HMM PF06812
YP_001024528.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001024529.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001024530.1	identified by match to protein family HMM PF05591
YP_001024531.1	identified by match to protein family HMM PF05943
YP_001024532.1	identified by match to protein family HMM PF05638
YP_001024533.1	identified by match to protein family HMM PF04965
YP_001024534.1	identified by match to protein family HMM PF05947
YP_001024535.1	identified by match to protein family HMM PF06996
YP_001024536.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_001024537.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_001024538.1	identified by match to protein family HMM PF00805
YP_001024539.1	identified by match to protein family HMM PF00805
YP_001024543.1	identified by match to protein family HMM PF05936
YP_001024550.1	identified by match to protein family HMM PF01527
YP_001024551.1	identified by match to protein family HMM PF00665
YP_001024556.1	identified by match to protein family HMM PF08028
YP_001024557.1	identified by match to protein family HMM PF00816
YP_001024558.1	identified by match to protein family HMM PF01381
YP_001024560.1	identified by match to protein family HMM PF00324
YP_001024564.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001024565.1	identified by match to protein family HMM PF07690
YP_001024568.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001024569.1	identified by match to protein family HMM PF00582
YP_001024570.1	identified by match to protein family HMM PF00582
YP_001024571.1	identified by match to protein family HMM PF00582
YP_001024572.1	identified by match to protein family HMM PF01609
YP_001024573.1	identified by match to protein family HMM PF00582
YP_001024575.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_001024583.1	identified by match to protein family HMM PF01381; match to protein family HMM PF05899; match to protein family HMM PF07883
YP_001024585.1	associated with the biosynthesis repression of 4-hydroxy-2-alkylquinolines (HAQs) and HAQ-analogs, which act as extracellular signals that interact with quorum sensing
YP_001024588.1	identified by match to protein family HMM PF01752; match to protein family HMM PF08453
YP_001024590.1	identified by match to protein family HMM PF00266
YP_001024592.1	identified by match to protein family HMM PF02668
YP_001024595.1	identified by match to protein family HMM PF09334
YP_001024600.1	identified by match to protein family HMM PF01835
YP_001024601.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02073
YP_001024602.1	identified by match to protein family HMM PF00072
YP_001024603.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001024608.1	identified by match to protein family HMM PF03171
YP_001024609.1	identified by match to protein family HMM PF00583
YP_001024613.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_001024614.1	identified by match to protein family HMM PF00324
YP_001024615.1	identified by match to protein family HMM PF01037
YP_001024617.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254
YP_001024619.1	identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065
YP_001024620.1	identified by match to protein family HMM PF01094
YP_001024622.1	identified by match to protein family HMM PF00440
YP_001024624.1	identified by match to protein family HMM PF00563
YP_001024626.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001024627.1	identified by match to protein family HMM PF00816
YP_001024628.1	identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662
YP_001024631.1	identified by match to protein family HMM PF01527
YP_001024632.1	identified by match to protein family HMM PF00665
YP_001024635.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001024637.1	identified by match to protein family HMM PF01557
YP_001024638.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_001024639.1	identified by match to protein family HMM PF04909
YP_001024641.1	identified by match to protein family HMM PF08666
YP_001024642.1	identified by match to protein family HMM PF02653
YP_001024643.1	identified by match to protein family HMM PF00005
YP_001024644.1	identified by match to protein family HMM PF00532
YP_001024645.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001024646.1	identified by match to protein family HMM PF07519
YP_001024647.1	identified by match to protein family HMM PF00267
YP_001024648.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001024651.1	identified by match to protein family HMM PF00171
YP_001024652.1	catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA
YP_001024655.1	identified by match to protein family HMM PF08818
YP_001024656.1	identified by match to protein family HMM PF05899
YP_001024659.1	identified by match to protein family HMM PF08450
YP_001024662.1	identified by match to protein family HMM PF01047
YP_001024667.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_001024669.1	identified by match to protein family HMM TIGR01409
YP_001024670.1	identified by match to protein family HMM PF04185
YP_001024671.1	identified by match to protein family HMM PF03150
YP_001024673.1	identified by match to protein family HMM PF00654
YP_001024674.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001024675.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001024676.1	identified by match to protein family HMM PF05853
YP_001024677.1	identified by match to protein family HMM PF07690
YP_001024678.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_001024679.1	identified by match to protein family HMM PF07905
YP_001024680.1	identified by match to protein family HMM PF02133
YP_001024682.1	identified by match to protein family HMM PF00903
YP_001024683.1	identified by match to protein family HMM PF00267
YP_001024686.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001024687.1	identified by match to protein family HMM PF04632
YP_001024689.1	identified by match to protein family HMM PF00328
YP_001024690.1	identified by match to protein family HMM PF03576
YP_001024691.1	identified by match to protein family HMM PF00324
YP_001024692.1	identified by match to protein family HMM PF00196
YP_001024694.1	identified by match to protein family HMM PF03640
YP_001024695.1	identified by match to protein family HMM PF00267
YP_001024697.1	identified by match to protein family HMM PF03583
YP_001024698.1	identified by match to protein family HMM PF00665
YP_001024699.1	identified by match to protein family HMM PF01527
YP_001024701.1	identified by match to protein family HMM PF07883
YP_001024702.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_001024703.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001024704.1	identified by match to protein family HMM PF03446
YP_001024705.1	identified by match to protein family HMM PF07005
YP_001024706.1	identified by match to protein family HMM PF00596
YP_001024707.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001024708.1	identified by match to protein family HMM PF01261
YP_001024709.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM PF08659
YP_001024710.1	identified by match to protein family HMM PF05118
YP_001024712.1	identified by match to protein family HMM PF05118
YP_001024714.1	identified by match to protein family HMM PF04069
YP_001024715.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_001024716.1	identified by match to protein family HMM PF00528
YP_001024717.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186
YP_001024718.1	identified by match to protein family HMM PF02525; match to protein family HMM PF03358
YP_001024726.1	identified by match to protein family HMM PF00903
YP_001024727.1	identified by match to protein family HMM PF01451
YP_001024728.1	identified by match to protein family HMM PF01758
YP_001024729.1	identified by match to protein family HMM PF01527
YP_001024730.1	identified by match to protein family HMM PF00665
YP_001024731.1	identified by match to protein family HMM PF01476
YP_001024735.1	identified by match to protein family HMM PF03150
YP_001024736.1	identified by match to protein family HMM PF00149
YP_001024737.1	identified by match to protein family HMM PF00665
YP_001024738.1	identified by match to protein family HMM PF01527
YP_001024739.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001024740.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR02288
YP_001024741.1	catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA
YP_001024742.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001024744.1	identified by match to protein family HMM TIGR02155
YP_001024745.1	identified by match to protein family HMM PF03562; match to protein family HMM PF06725
YP_001024746.1	protein associated with Co2+ and Mg2+ efflux
YP_001024747.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_001024748.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_001024749.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_001024750.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_001024751.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001024752.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_001024753.1	identified by match to protein family HMM PF01928
YP_001024754.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_001024755.1	identified by match to protein family HMM PF02525; match to protein family HMM PF03358
YP_001024756.1	identified by match to protein family HMM PF00595; match to protein family HMM PF05299
YP_001024758.1	identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988
YP_001024761.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_001024763.1	identified by match to protein family HMM PF01058; match to protein family HMM TIGR01957
YP_001024765.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773
YP_001024770.1	identified by match to protein family HMM PF03009; match to protein family HMM TIGR01409
YP_001024773.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_001024774.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_001024775.1	identified by match to protein family HMM PF00857
YP_001024776.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_001024780.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_001024781.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_001024782.1	identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536
YP_001024783.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365
YP_001024784.1	catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate
YP_001024785.1	identified by match to protein family HMM PF02900
YP_001024786.1	identified by match to protein family HMM PF00324
YP_001024788.1	identified by match to protein family HMM PF00665
YP_001024789.1	identified by match to protein family HMM PF01527
YP_001024791.1	identified by match to protein family HMM PF07859
YP_001024793.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_001024794.1	identified by match to protein family HMM PF05853
YP_001024795.1	identified by match to protein family HMM PF04069
YP_001024796.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_001024797.1	identified by match to protein family HMM PF07504
YP_001024798.1	identified by match to protein family HMM PF01546; match to protein family HMM PF04389
YP_001024799.1	identified by match to protein family HMM PF00267
YP_001024800.1	identified by match to protein family HMM PF04069
YP_001024801.1	identified by match to protein family HMM PF00884
YP_001024802.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001024803.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_001024804.1	identified by match to protein family HMM PF00324
YP_001024805.1	identified by match to protein family HMM PF04069
YP_001024806.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_001024807.1	identified by match to protein family HMM PF00355
YP_001024809.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_001024810.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02754
YP_001024811.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992
YP_001024812.1	identified by match to protein family HMM PF02830
YP_001024813.1	identified by match to protein family HMM PF01244
YP_001024814.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_001024815.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_001024816.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02819
YP_001024817.1	identified by match to protein family HMM PF00532
YP_001024818.1	identified by match to protein family HMM PF02435
YP_001024819.1	identified by match to protein family HMM PF00251; match to protein family HMM PF08244
YP_001024821.1	identified by match to protein family HMM PF00529
YP_001024822.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001024824.1	identified by match to protein family HMM TIGR01556
YP_001024826.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001024827.1	identified by match to protein family HMM PF00201; match to protein family HMM PF03033
YP_001024834.1	identified by match to protein family HMM PF06744; match to protein family HMM PF06761
YP_001024835.1	identified by match to protein family HMM PF00691
YP_001024836.1	identified by match to protein family HMM PF05936; DUF876
YP_001024837.1	identified by match to protein family HMM PF05936
YP_001024842.1	identified by match to protein family HMM PF00805
YP_001024843.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_001024844.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_001024845.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_001024848.1	identified by match to protein family HMM PF05947
YP_001024849.1	identified by match to protein family HMM PF04965
YP_001024850.1	identified by match to protein family HMM PF05638
YP_001024851.1	identified by match to protein family HMM PF05943
YP_001024852.1	identified by match to protein family HMM PF06812
YP_001024853.1	identified by match to protein family HMM PF02550
YP_001024854.1	identified by match to protein family HMM PF01066
YP_001024855.1	identified by match to protein family HMM PF03171
YP_001024856.1	identified by match to protein family HMM TIGR00374
YP_001024858.1	identified by match to protein family HMM TIGR02320
YP_001024859.1	identified by match to protein family HMM PF02775
YP_001024860.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212
YP_001024861.1	identified by match to protein family HMM PF01965
YP_001024862.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_001024865.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_001024866.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001024867.1	identified by match to protein family HMM PF01841; match to protein family HMM PF08379
YP_001024868.1	identified by match to protein family HMM PF04169
YP_001024870.1	identified by match to protein family HMM PF01841; match to protein family HMM PF08379
YP_001024871.1	identified by match to protein family HMM PF01841; match to protein family HMM PF08379
YP_001024872.1	identified by match to protein family HMM PF04168
YP_001024873.1	identified by match to protein family HMM PF04169; match to protein family HMM PF04174
YP_001024875.1	identified by match to protein family HMM PF00881
YP_001024877.1	identified by match to protein family HMM PF03067
YP_001024879.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR03137
YP_001024880.1	identified by match to protein family HMM PF01527
YP_001024881.1	identified by match to protein family HMM PF00665
YP_001024882.1	identified by match to protein family HMM PF00474
YP_001024884.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_001024885.1	identified by match to protein family HMM PF00892
YP_001024886.1	identified by match to protein family HMM PF00892
YP_001024887.1	identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645
YP_001024888.1	identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723
YP_001024890.1	identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754
YP_001024891.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_001024892.1	identified by match to protein family HMM PF04324
YP_001024893.1	identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352
YP_001024894.1	identified by match to protein family HMM PF01618
YP_001024895.1	identified by match to protein family HMM PF02472
YP_001024896.1	identified by match to protein family HMM PF01609
YP_001024899.1	identified by match to protein family HMM PF00583
YP_001024900.1	identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365
YP_001024901.1	identified by match to protein family HMM PF02733
YP_001024902.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001024903.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001024904.1	identified by match to protein family HMM PF00532
YP_001024905.1	identified by match to protein family HMM PF02653
YP_001024906.1	identified by match to protein family HMM PF00005
YP_001024907.1	identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120
YP_001024908.1	identified by match to protein family HMM PF04198
YP_001024909.1	identified by match to protein family HMM PF00267
YP_001024910.1	identified by match to protein family HMM TIGR00725
YP_001024911.1	identified by match to protein family HMM PF00528
YP_001024913.1	identified by match to protein family HMM PF00005
YP_001024914.1	identified by match to protein family HMM PF00528
YP_001024916.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001024918.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786
YP_001024919.1	identified by match to protein family HMM PF05171
YP_001024920.1	identified by match to protein family HMM PF01497
YP_001024922.1	identified by match to protein family HMM PF01032
YP_001024924.1	with HmuTU is involved in the import of hemin
YP_001024925.1	identified by match to protein family HMM PF03458
YP_001024926.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_001024928.1	specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_001024929.1	identified by match to protein family HMM PF01212
YP_001024930.1	identified by match to protein family HMM PF01654
YP_001024931.1	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203
YP_001024936.1	identified by match to protein family HMM PF00494
YP_001024939.1	identified by match to protein family HMM PF00903
YP_001024941.1	identified by match to protein family HMM PF01663
YP_001024943.1	identified by match to protein family HMM PF05359
YP_001024944.1	identified by match to protein family HMM PF06742
YP_001024947.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_001024949.1	identified by match to protein family HMM PF00583
YP_001024953.1	identified by match to protein family HMM PF02308
YP_001024954.1	identified by match to protein family HMM PF07221
YP_001024955.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001024959.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203
YP_001024960.1	identified by match to protein family HMM PF04055
YP_001024961.1	identified by match to protein family HMM PF08896; match to protein family HMM PF08898
YP_001024962.1	identified by match to protein family HMM PF08896; match to protein family HMM PF08898
YP_001024963.1	identified by match to protein family HMM PF08898
YP_001024965.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_001024966.1	identified by match to protein family HMM PF04303; match to protein family HMM TIGR02334
YP_001024967.1	Catalyzes the conversion of citrate to isocitrate
YP_001024968.1	catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity
YP_001024969.1	catalyzes the formation of pyruvate and succinate from 2-methylisocitrate
YP_001024970.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR02329
YP_001024972.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001024976.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR01249
YP_001024977.1	identified by match to protein family HMM PF01804
YP_001024980.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001024982.1	identified by match to protein family HMM PF03746
YP_001024983.1	identified by match to protein family HMM PF00364
YP_001024984.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_001024985.1	identified by match to protein family HMM PF02682
YP_001024986.1	identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724
YP_001024991.1	identified by match to protein family HMM PF00903
YP_001024992.1	identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326
YP_001024993.1	identified by match to protein family HMM PF02525
YP_001024994.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025000.1	identified by match to protein family HMM PF00805
YP_001025001.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_001025002.2	identified by match to protein family HMM PF06812
YP_001025003.1	identified by match to protein family HMM PF06996
YP_001025004.1	identified by match to protein family HMM PF05947
YP_001025005.1	identified by match to protein family HMM PF04965
YP_001025006.1	identified by match to protein family HMM PF07024
YP_001025008.1	identified by match to protein family HMM PF02861
YP_001025009.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_001025010.1	identified by match to protein family HMM PF05591
YP_001025011.1	identified by match to protein family HMM PF05943
YP_001025012.1	identified by match to protein family HMM PF05638
YP_001025015.1	identified by match to protein family HMM PF05936
YP_001025016.1	identified by match to protein family HMM PF00691
YP_001025017.1	identified by match to protein family HMM PF06761
YP_001025018.1	identified by match to protein family HMM PF06744
YP_001025021.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025022.1	identified by match to protein family HMM PF02900
YP_001025023.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001025024.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_001025025.1	identified by match to protein family HMM PF03241
YP_001025026.1	identified by match to protein family HMM PF02668
YP_001025027.1	identified by match to protein family HMM PF05141
YP_001025028.1	identified by match to protein family HMM PF01610
YP_001025030.1	identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180
YP_001025036.1	identified by match to protein family HMM PF00106
YP_001025037.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025038.1	identified by match to protein family HMM PF01266
YP_001025039.1	identified by match to protein family HMM PF00497
YP_001025043.1	identified by match to protein family HMM PF00487
YP_001025046.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025047.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_001025050.1	exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA
YP_001025051.1	identified by match to protein family HMM PF01527
YP_001025052.1	identified by match to protein family HMM PF00665
YP_001025055.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001025056.1	identified by match to protein family HMM PF03328
YP_001025058.1	identified by match to protein family HMM PF00267
YP_001025059.1	identified by match to protein family HMM PF03972; match to protein family HMM TIGR01409
YP_001025062.1	identified by match to protein family HMM TIGR00688
YP_001025063.1	identified by match to protein family HMM PF00708
YP_001025064.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993
YP_001025067.1	identified by match to protein family HMM PF00535
YP_001025069.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_001025070.1	identified by match to protein family HMM PF04055
YP_001025072.1	identified by match to protein family HMM PF08883
YP_001025074.1	identified by match to protein family HMM PF00202
YP_001025077.1	identified by match to protein family HMM PF01609
YP_001025080.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001025086.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001025089.1	identified by match to protein family HMM PF00534
YP_001025090.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001025091.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_001025094.1	identified by match to protein family HMM PF00535
YP_001025095.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_001025096.1	identified by match to protein family HMM PF00158; match to protein family HMM PF07728
YP_001025099.1	identified by match to protein family HMM PF01075
YP_001025100.1	identified by match to protein family HMM PF00535
YP_001025101.1	identified by match to protein family HMM PF02543
YP_001025102.1	identified by match to protein family HMM PF01075
YP_001025103.1	identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662
YP_001025104.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001025106.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00072; match to protein family HMM PF00664; match to protein family HMM PF02518
YP_001025107.1	identified by match to protein family HMM PF04972
YP_001025108.1	identified by match to protein family HMM PF02666
YP_001025109.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_001025112.1	identified by match to protein family HMM PF03446
YP_001025114.1	identified by match to protein family HMM PF01648
YP_001025116.1	identified by match to protein family HMM PF07690
YP_001025118.1	identified by match to protein family HMM PF01613
YP_001025121.1	E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_001025122.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_001025123.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_001025124.1	identified by match to protein family HMM PF00676
YP_001025131.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025134.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00732; match to protein family HMM PF01266
YP_001025135.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01734; match to protein family HMM PF07992
YP_001025136.1	identified by match to protein family HMM PF01258
YP_001025138.1	identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849
YP_001025139.1	class I; catalyzes the formation of deoxyribonucleotides from their corresponding ribonucleotides
YP_001025143.1	identified by match to protein family HMM PF00916; match to protein family HMM PF01740
YP_001025145.1	identified by match to protein family HMM PF00571
YP_001025147.1	identified by match to protein family HMM PF00011
YP_001025149.1	identified by match to protein family HMM PF00501
YP_001025150.1	identified by match to protein family HMM PF00196
YP_001025152.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001025153.1	identified by match to protein family HMM PF02668
YP_001025154.1	identified by match to protein family HMM PF05853
YP_001025155.1	identified by match to protein family HMM PF07690
YP_001025156.1	identified by match to protein family HMM PF06821
YP_001025158.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_001025159.1	identified by match to protein family HMM PF00037
YP_001025161.1	identified by match to protein family HMM PF01522
YP_001025165.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912
YP_001025166.1	identified by match to protein family HMM PF00085
YP_001025169.1	identified by match to protein family HMM PF00267
YP_001025171.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_001025174.1	identified by match to protein family HMM PF00583
YP_001025175.1	identified by match to protein family HMM PF00583
YP_001025177.1	identified by match to protein family HMM PF01523
YP_001025180.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM PF08269
YP_001025181.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281
YP_001025182.1	identified by match to protein family HMM PF01610
YP_001025183.1	identified by match to protein family HMM PF01609
YP_001025184.1	identified by match to protein family HMM PF05494
YP_001025187.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_001025188.1	identified by match to protein family HMM PF00561; match to protein family HMM PF07819
YP_001025189.1	identified by match to protein family HMM PF01648
YP_001025193.1	identified by match to protein family HMM PF02687
YP_001025194.1	identified by match to protein family HMM PF00005
YP_001025195.1	identified by match to protein family HMM PF00743
YP_001025196.1	identified by match to protein family HMM PF00067; match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001025197.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF08659
YP_001025198.1	identified by match to protein family HMM PF00698
YP_001025202.1	identified by match to protein family HMM PF04333
YP_001025203.1	identified by match to protein family HMM PF02627
YP_001025204.1	identified by match to protein family HMM PF00202
YP_001025205.1	identified by match to protein family HMM PF03417
YP_001025206.1	similar to ATP-binding component of ABC transporters
YP_001025207.1	similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine
YP_001025208.1	similar to periplasmic-binding component of ABC transporters
YP_001025211.1	identified by match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787
YP_001025213.1	identified by match to protein family HMM PF00494
YP_001025215.1	identified by match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00254
YP_001025216.1	identified by match to protein family HMM PF04509
YP_001025217.1	identified by match to protein family HMM PF00072
YP_001025219.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001025220.1	identified by match to protein family HMM PF03358
YP_001025222.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_001025223.1	identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014
YP_001025224.1	identified by match to protein family HMM PF01656
YP_001025225.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_001025226.1	identified by match to protein family HMM PF01609
YP_001025230.1	identified by match to protein family HMM PF00589
YP_001025232.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001025233.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_001025234.1	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism
YP_001025236.1	identified by match to protein family HMM PF04264
YP_001025238.1	identified by match to protein family HMM PF00440
YP_001025239.1	identified by match to protein family HMM PF07080
YP_001025240.1	identified by match to protein family HMM PF04952
YP_001025242.1	identified by match to protein family HMM PF00180; match to protein family HMM TIGR02089
YP_001025243.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025244.1	identified by match to protein family HMM PF04140
YP_001025245.1	identified by match to protein family HMM PF02798
YP_001025248.1	identified by match to protein family HMM PF01734
YP_001025249.1	catalyzes the formation of acetoacetate from 3-hydroxybutyrate
YP_001025250.1	converts acetoacetate to acetone and carbon dioxide
YP_001025251.1	identified by match to protein family HMM PF01569
YP_001025255.1	identified by match to protein family HMM PF04954; match to protein family HMM PF08021
YP_001025256.1	identified by match to protein family HMM PF03551
YP_001025258.1	identified by match to protein family HMM PF00067
YP_001025262.1	identified by match to protein family HMM PF02310; match to protein family HMM PF04055
YP_001025264.1	identified by match to protein family HMM PF01810
YP_001025265.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_001025266.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_001025267.1	identified by match to protein family HMM PF00582
YP_001025272.1	identified by match to protein family HMM PF00171
YP_001025274.1	identified by match to protein family HMM PF00665
YP_001025275.1	identified by match to protein family HMM PF01527
YP_001025276.1	identified by match to protein family HMM PF08450
YP_001025280.1	identified by match to protein family HMM PF00132
YP_001025281.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001025282.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_001025283.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025284.1	catalyzes the formation of protocatechuate from 4-hydroxybenzoate
YP_001025285.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_001025286.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_001025287.1	Catalyzes the cycloisomerization of cis,cis-muconate
YP_001025288.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR02427
YP_001025289.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425
YP_001025290.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001025292.1	identified by match to protein family HMM PF01810
YP_001025293.1	identified by match to protein family HMM PF07690
YP_001025296.1	identified by match to protein family HMM PF02417
YP_001025297.1	identified by match to protein family HMM PF02417
YP_001025301.1	identified by match to protein family HMM PF00127
YP_001025302.1	member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_001025303.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630
YP_001025305.1	identified by match to protein family HMM PF03693
YP_001025308.1	identified by match to protein family HMM PF00816
YP_001025310.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001025312.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001025313.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_001025320.1	identified by match to protein family HMM PF00165
YP_001025322.1	identified by match to protein family HMM PF04185; match to protein family HMM PF05506
YP_001025324.1	identified by match to protein family HMM PF01527
YP_001025325.1	identified by match to protein family HMM PF00665
YP_001025326.1	identified by match to protein family HMM PF02706
YP_001025327.1	identified by match to protein family HMM PF00150
YP_001025333.1	identified by match to protein family HMM PF00082; match to protein family HMM PF09286
YP_001025336.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001025338.1	identified by match to protein family HMM PF00561
YP_001025339.1	identified by match to protein family HMM PF01266
YP_001025340.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001025341.1	identified by match to protein family HMM PF00440
YP_001025342.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025343.1	identified by match to protein family HMM PF00665
YP_001025344.1	identified by match to protein family HMM PF01527
YP_001025345.1	identified by match to protein family HMM PF02012
YP_001025348.1	identified by match to protein family HMM PF00857
YP_001025349.1	identified by match to protein family HMM PF01047
YP_001025352.1	identified by match to protein family HMM PF07859
YP_001025353.1	catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol
YP_001025354.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08021
YP_001025355.1	identified by match to protein family HMM PF00866
YP_001025356.1	identified by match to protein family HMM PF00355; match to protein family HMM PF00848
YP_001025357.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025358.1	identified by match to protein family HMM PF01370
YP_001025359.1	identified by match to protein family HMM PF00126
YP_001025361.1	identified by match to protein family HMM PF00165
YP_001025362.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992
YP_001025366.1	identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433
YP_001025367.1	identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843
YP_001025368.1	identified by match to protein family HMM TIGR02842
YP_001025369.1	identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847
YP_001025370.1	identified by match to protein family HMM PF02426; match to protein family HMM TIGR03221
YP_001025371.1	identified by match to protein family HMM PF00775; match to protein family HMM PF04444; match to protein family HMM TIGR02439
YP_001025372.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR02534
YP_001025373.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025374.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_001025375.1	identified by match to protein family HMM PF00355; match to protein family HMM PF00848
YP_001025376.1	identified by match to protein family HMM PF00866
YP_001025377.1	identified by match to protein family HMM PF00355
YP_001025378.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_001025379.1	identified by match to protein family HMM PF01230
YP_001025380.1	identified by match to protein family HMM PF00614
YP_001025385.1	identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831
YP_001025387.1	catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis
YP_001025388.1	identified by match to protein family HMM PF00171
YP_001025393.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001025395.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001025396.1	identified by match to protein family HMM PF01584
YP_001025397.1	identified by match to protein family HMM PF00515; match to protein family HMM PF01739; match to protein family HMM PF07719
YP_001025398.1	identified by match to protein family HMM PF01584
YP_001025399.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518
YP_001025400.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_001025401.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493
YP_001025403.1	identified by match to protein family HMM PF00654
YP_001025405.1	identified by match to protein family HMM PF02517
YP_001025407.1	identified by match to protein family HMM PF05433
YP_001025409.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001025410.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_001025411.1	identified by match to protein family HMM PF01965
YP_001025412.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001025413.1	identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413
YP_001025419.1	identified by match to protein family HMM PF02566
YP_001025420.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025422.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001025423.1	identified by match to protein family HMM PF01636
YP_001025424.1	identified by match to protein family HMM PF00300
YP_001025425.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001025427.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659
YP_001025428.1	identified by match to protein family HMM PF00107
YP_001025430.1	identified by match to protein family HMM PF07690
YP_001025431.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715
YP_001025433.1	identified by match to protein family HMM PF01594
YP_001025435.1	identified by match to protein family HMM PF05957
YP_001025437.1	identified by match to protein family HMM PF03372
YP_001025438.1	identified by match to protein family HMM PF04946
YP_001025439.1	identified by match to protein family HMM PF04946
YP_001025441.1	identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_001025444.1	identified by match to protein family HMM PF01471; match to protein family HMM PF01510
YP_001025445.1	identified by match to protein family HMM PF02915
YP_001025449.1	identified by match to protein family HMM PF01050; match to protein family HMM PF07883
YP_001025450.1	identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479
YP_001025452.1	identified by match to protein family HMM TIGR03025
YP_001025453.1	identified by match to protein family HMM PF01527
YP_001025454.1	identified by match to protein family HMM PF00665
YP_001025457.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_001025458.1	identified by match to protein family HMM PF01810
YP_001025460.1	identified by match to protein family HMM PF00478; match to protein family HMM PF01070
YP_001025461.1	identified by match to protein family HMM PF04073
YP_001025463.1	identified by match to protein family HMM PF02922
YP_001025464.1	identified by match to protein family HMM PF02581
YP_001025465.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_001025466.1	identified by match to protein family HMM PF00512
YP_001025467.1	identified by match to protein family HMM PF00892
YP_001025468.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025469.1	identified by match to protein family HMM PF01361
YP_001025471.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03459; match to protein family HMM TIGR00637; match to protein family HMM TIGR00638
YP_001025472.1	identified by match to protein family HMM PF00005
YP_001025473.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141
YP_001025474.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256
YP_001025475.1	identified by match to protein family HMM PF01569
YP_001025476.1	identified by match to protein family HMM TIGR01840
YP_001025478.1	identified by match to protein family HMM PF02566
YP_001025479.1	identified by match to protein family HMM PF01047
YP_001025482.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine
YP_001025485.1	Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile
YP_001025486.1	identified by match to protein family HMM PF00589
YP_001025487.1	identified by match to protein family HMM PF00665
YP_001025488.1	identified by match to protein family HMM PF01527
YP_001025492.1	identified by match to protein family HMM PF04463
YP_001025494.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_001025495.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_001025496.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_001025499.1	identified by match to protein family HMM PF01738; match to protein family HMM TIGR01409
YP_001025500.1	identified by match to protein family HMM PF00581
YP_001025501.1	identified by match to protein family HMM PF01609
YP_001025502.1	identified by match to protein family HMM PF00355
YP_001025503.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_001025504.1	identified by match to protein family HMM PF00348
YP_001025505.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_001025506.1	similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis
YP_001025507.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_001025508.1	identified by match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275
YP_001025509.1	identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030
YP_001025510.1	identified by match to protein family HMM PF02637
YP_001025511.1	synthesizes RNA primers at the replication forks
YP_001025512.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_001025513.1	identified by match to protein family HMM PF00665
YP_001025515.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025517.1	identified by match to protein family HMM PF05036
YP_001025519.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_001025521.1	identified by match to protein family HMM PF01381; match to protein family HMM PF05899; match to protein family HMM PF07883
YP_001025522.1	identified by match to protein family HMM PF00496
YP_001025523.1	identified by match to protein family HMM PF00528
YP_001025524.1	identified by match to protein family HMM PF00528
YP_001025525.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_001025526.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_001025527.1	identified by match to protein family HMM PF03573
YP_001025532.1	identified by match to protein family HMM PF03600
YP_001025534.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448
YP_001025537.1	identified by match to protein family HMM PF00816
YP_001025540.1	identified by match to protein family HMM PF00583; match to protein family HMM PF02629
YP_001025544.2	catalyzes the formation of indole-3-acetic acid from indole-3-acetamide
YP_001025545.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001025547.1	identified by match to protein family HMM PF01557
YP_001025548.1	identified by match to protein family HMM PF01070
YP_001025549.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025551.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001025553.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212
YP_001025554.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001025555.1	identified by match to protein family HMM PF00753
YP_001025556.1	identified by match to protein family HMM PF00581; match to protein family HMM PF01022
YP_001025559.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025561.1	catalyzes the formation of pyruvate from serine
YP_001025562.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025564.1	identified by match to protein family HMM PF00106
YP_001025568.1	identified by match to protein family HMM PF01494
YP_001025571.1	identified by match to protein family HMM PF00498
YP_001025574.1	identified by match to protein family HMM PF05936
YP_001025575.1	identified by match to protein family HMM PF00691
YP_001025576.1	identified by match to protein family HMM PF06744; match to protein family HMM PF06761
YP_001025579.1	identified by match to protein family HMM PF00069
YP_001025580.1	identified by match to protein family HMM PF06812
YP_001025581.1	identified by match to protein family HMM PF05591
YP_001025582.1	identified by match to protein family HMM PF05943
YP_001025583.1	identified by match to protein family HMM PF05638
YP_001025584.1	identified by match to protein family HMM PF04965
YP_001025585.1	identified by match to protein family HMM PF05947
YP_001025586.1	identified by match to protein family HMM PF06996
YP_001025587.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_001025588.1	identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646
YP_001025590.1	identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_001025591.1	identified by match to protein family HMM PF00665
YP_001025592.1	identified by match to protein family HMM PF01527
YP_001025593.1	identified by match to protein family HMM PF02133
YP_001025594.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_001025595.1	identified by match to protein family HMM PF06080
YP_001025596.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_001025598.1	identified by match to protein family HMM PF07883
YP_001025599.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_001025601.1	identified by match to protein family HMM PF01292
YP_001025604.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01778
YP_001025605.1	identified by match to protein family HMM PF00561; match to protein family HMM PF07819
YP_001025606.1	acts as a molecular chaperone to fold and export lipase A
YP_001025607.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001025608.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402
YP_001025609.1	identified by match to protein family HMM PF01547
YP_001025611.1	identified by match to protein family HMM PF00528
YP_001025615.1	identified by match to protein family HMM PF00665
YP_001025616.1	identified by match to protein family HMM PF01527
YP_001025617.1	identified by match to protein family HMM PF03865; match to protein family HMM PF08479
YP_001025619.1	identified by match to protein family HMM PF05860; match to protein family HMM TIGR01901
YP_001025620.1	catalyzes the conversion of citrate to isocitrate
YP_001025621.1	functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C
YP_001025624.1	catalyzes the oxidation of malate to oxaloacetate
YP_001025625.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_001025626.1	identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970
YP_001025627.1	identified by match to protein family HMM PF01127; match to protein family HMM TIGR02968
YP_001025628.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_001025629.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_001025630.1	identified by match to protein family HMM PF03937
YP_001025631.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_001025632.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_001025634.1	identified by match to protein family HMM PF00665
YP_001025635.1	identified by match to protein family HMM PF01527
YP_001025638.1	identified by match to protein family HMM PF07350
YP_001025639.1	paralogs to the E1 component of pyruvate dehydrogenase subunit E1
YP_001025640.1	identified by match to protein family HMM PF01037
YP_001025646.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_001025647.1	identified by match to protein family HMM PF08085
YP_001025648.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_001025649.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_001025651.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_001025653.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_001025654.1	catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis
YP_001025655.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_001025656.1	identified by match to protein family HMM PF01555
YP_001025657.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_001025658.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_001025659.1	identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499
YP_001025660.1	identified by match to protein family HMM PF05036
YP_001025661.1	identified by match to protein family HMM PF02674
YP_001025662.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_001025663.1	catalyzes the conversion of O-succinylhomoserine into homocysteine
YP_001025664.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001025665.1	identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM TIGR01472
YP_001025666.1	identified by match to protein family HMM PF01757
YP_001025670.1	identified by match to protein family HMM PF01943
YP_001025671.1	identified by match to protein family HMM PF00534
YP_001025674.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_001025676.1	identified by match to protein family HMM PF01757
YP_001025677.1	identified by match to protein family HMM PF00216
YP_001025679.1	identified by match to protein family HMM PF00267
YP_001025680.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_001025682.1	identified by match to protein family HMM PF04952
YP_001025684.1	identified by match to protein family HMM PF00583
YP_001025685.1	identified by match to protein family HMM PF00497
YP_001025687.1	identified by match to protein family HMM PF00296
YP_001025690.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001025691.1	identified by match to protein family HMM TIGR01409
YP_001025692.1	identified by match to protein family HMM PF02698
YP_001025694.1	identified by match to protein family HMM PF04879; match to protein family HMM TIGR01409
YP_001025696.1	identified by match to protein family HMM PF01568
YP_001025697.1	identified by match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582
YP_001025698.1	identified by match to protein family HMM TIGR01583
YP_001025699.1	identified by match to protein family HMM PF04216; match to protein family HMM TIGR01562
YP_001025700.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_001025701.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00475
YP_001025707.1	identified by match to protein family HMM PF01915
YP_001025708.1	identified by match to protein family HMM PF00933
YP_001025709.1	identified by match to protein family HMM PF07690
YP_001025711.1	identified by match to protein family HMM PF00067; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_001025715.1	identified by match to protein family HMM PF01734
YP_001025718.1	identified by match to protein family HMM PF00652; match to protein family HMM PF09118
YP_001025720.1	identified by match to protein family HMM PF00072
YP_001025721.1	identified by match to protein family HMM PF08495
YP_001025722.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001025724.1	identified by match to protein family HMM PF07690
YP_001025725.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025728.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025729.1	identified by match to protein family HMM PF03328
YP_001025730.1	identified by match to protein family HMM PF01575
YP_001025731.1	identified by match to protein family HMM PF02550
YP_001025732.1	catalyzes the formation of acetate from pyruvate
YP_001025734.1	identified by match to protein family HMM PF00202; match to protein family HMM PF07690; match to protein family HMM TIGR00709
YP_001025735.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_001025736.1	identified by match to protein family HMM PF01527
YP_001025737.1	identified by match to protein family HMM PF00665
YP_001025738.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733
YP_001025739.1	identified by match to protein family HMM PF02668
YP_001025742.1	identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401
YP_001025743.1	identified by match to protein family HMM TIGR02559
YP_001025744.1	identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546
YP_001025745.1	identified by match to protein family HMM TIGR02499
YP_001025746.1	identified by match to protein family HMM TIGR02560
YP_001025747.1	identified by match to protein family HMM PF01514
YP_001025748.1	identified by match to protein family HMM TIGR02558
YP_001025749.1	identified by match to protein family HMM TIGR02561
YP_001025750.1	identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404
YP_001025751.1	identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399
YP_001025752.1	identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551
YP_001025753.1	part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response
YP_001025754.1	identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403
YP_001025762.1	identified by match to protein family HMM PF00165
YP_001025770.1	identified by match to protein family HMM PF02518
YP_001025771.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001025773.1	identified by match to protein family HMM PF00437
YP_001025775.1	identified by match to protein family HMM PF00263; match to protein family HMM TIGR02520
YP_001025778.1	identified by match to protein family HMM PF00437
YP_001025779.1	identified by match to protein family HMM PF00482
YP_001025780.1	identified by match to protein family HMM PF08805
YP_001025782.1	identified by match to protein family HMM TIGR02532
YP_001025783.1	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516
YP_001025792.1	identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230
YP_001025793.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025798.1	identified by match to protein family HMM PF07804; match to protein family HMM PF07805; match to protein family HMM TIGR03071
YP_001025799.1	identified by match to protein family HMM PF01381
YP_001025803.1	binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP)
YP_001025804.1	catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans
YP_001025805.1	identified by match to protein family HMM PF00515; match to protein family HMM PF05420; match to protein family HMM PF07719; match to protein family HMM PF07721
YP_001025809.1	identified by match to protein family HMM PF00535; match to protein family HMM PF07238; match to protein family HMM TIGR03030
YP_001025814.1	identified by match to protein family HMM PF00005
YP_001025815.1	identified by match to protein family HMM PF00528
YP_001025817.1	identified by match to protein family HMM PF00724
YP_001025818.1	identified by match to protein family HMM PF00765
YP_001025820.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472
YP_001025822.1	identified by match to protein family HMM PF00501; match to protein family HMM TIGR03098
YP_001025825.1	identified by match to protein family HMM PF01384
YP_001025827.1	identified by match to protein family HMM PF01037
YP_001025828.1	identified by match to protein family HMM PF01810
YP_001025830.1	identified by match to protein family HMM PF00082; match to protein family HMM PF09286
YP_001025834.1	identified by match to protein family HMM PF01070
YP_001025835.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025836.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001025838.1	identified by match to protein family HMM PF00903
YP_001025839.1	identified by match to protein family HMM PF01047
YP_001025842.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF07504
YP_001025845.1	identified by match to protein family HMM PF00486
YP_001025848.1	identified by match to protein family HMM TIGR02499
YP_001025849.1	identified by match to protein family HMM TIGR02555
YP_001025850.1	identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544
YP_001025852.1	identified by match to protein family HMM TIGR02105
YP_001025853.1	identified by match to protein family HMM TIGR02554
YP_001025855.1	identified by match to protein family HMM PF00165
YP_001025856.1	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516
YP_001025857.1	identified by match to protein family HMM PF02523; match to protein family HMM TIGR02511; match to protein family HMM TIGR02568
YP_001025858.1	identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399
YP_001025860.1	Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase
YP_001025863.1	identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551
YP_001025864.1	part of a type III secretory system probably involved in invasion into eukaryotic cells
YP_001025865.1	identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403
YP_001025866.1	identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401
YP_001025867.1	Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins
YP_001025868.1	identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552
YP_001025869.1	identified by match to protein family HMM PF03518
YP_001025870.1	identified by match to protein family HMM TIGR02101
YP_001025871.1	identified by match to protein family HMM PF00816
YP_001025872.1	identified by match to protein family HMM TIGR02553
YP_001025875.1	identified by match to protein family HMM PF01464
YP_001025876.1	identified by match to protein family HMM PF07487
YP_001025878.1	identified by match to protein family HMM PF09119
YP_001025880.1	identified by match to protein family HMM PF05932
YP_001025881.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281
YP_001025884.1	identified by match to protein family HMM PF00165
YP_001025888.1	identified by match to protein family HMM PF00665
YP_001025889.1	identified by match to protein family HMM PF01527
YP_001025891.1	identified by match to protein family HMM PF08982
YP_001025892.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_001025893.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025894.1	identified by match to protein family HMM PF01609
YP_001025895.1	identified by match to protein family HMM PF01527
YP_001025896.1	identified by match to protein family HMM PF00665
YP_001025897.1	identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363
YP_001025900.1	identified by match to protein family HMM PF04952
YP_001025902.1	identified by match to protein family HMM PF01757
YP_001025903.1	identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096
YP_001025904.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025905.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_001025906.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001025907.1	identified by match to protein family HMM PF00440; match to protein family HMM PF08362
YP_001025908.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339; match to protein family HMM TIGR02431
YP_001025909.1	catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA
YP_001025912.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08447; match to protein family HMM TIGR00229
YP_001025913.1	identified by match to protein family HMM PF00891
YP_001025916.1	identified by match to protein family HMM PF00355
YP_001025920.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780
YP_001025921.1	identified by match to protein family HMM PF00202; match to protein family HMM TIGR00700
YP_001025922.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001025923.1	identified by match to protein family HMM PF03600; match to protein family HMM PF03606
YP_001025924.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001025925.1	identified by match to protein family HMM PF05013
YP_001025927.1	identified by match to protein family HMM PF00892
YP_001025928.1	catalyzes the formation of selenophosphate from selenide and ATP
YP_001025931.1	identified by match to protein family HMM PF06516
YP_001025935.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001025936.1	identified by match to protein family HMM PF07859
YP_001025937.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_001025938.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915
YP_001025939.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001025941.1	identified by match to protein family HMM PF00375
YP_001025942.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001025943.1	identified by match to protein family HMM PF00583
YP_001025945.1	identified by match to protein family HMM PF03547
YP_001025947.1	identified by match to protein family HMM PF00501
YP_001025948.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_001025950.1	identified by match to protein family HMM PF00501
YP_001025951.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784
YP_001025953.1	identified by match to protein family HMM PF07991
YP_001025955.1	catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation
YP_001025956.1	identified by match to protein family HMM PF00202
YP_001025961.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801; match to protein family HMM PF08659
YP_001025964.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472
YP_001025965.1	identified by match to protein family HMM PF03180
YP_001025967.1	identified by match to protein family HMM PF00005
YP_001025968.1	identified by match to protein family HMM PF00528
YP_001025971.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_001025974.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001025975.1	identified by match to protein family HMM PF02754
YP_001025976.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02589; match to protein family HMM TIGR00273
YP_001025977.1	identified by match to protein family HMM PF02589
YP_001025978.1	identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795
YP_001025980.1	identified by match to protein family HMM PF07681
YP_001025982.1	identified by match to protein family HMM PF07690
YP_001025983.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001025984.1	identified by match to protein family HMM PF02615
YP_001025985.1	identified by match to protein family HMM PF00171
YP_001025986.1	identified by match to protein family HMM PF00324
YP_001025987.1	identified by match to protein family HMM PF00701
YP_001025988.1	identified by match to protein family HMM PF05544
YP_001025989.1	identified by match to protein family HMM PF01266
YP_001025990.1	identified by match to protein family HMM PF00111
YP_001025991.1	identified by match to protein family HMM PF01266; match to protein family HMM PF04324; match to protein family HMM PF07992
YP_001025992.1	identified by match to protein family HMM PF00165; match to protein family HMM PF08448
YP_001025995.1	identified by match to protein family HMM PF00665
YP_001025996.1	identified by match to protein family HMM PF01527
YP_001025997.1	identified by match to protein family HMM PF00903; match to protein family HMM PF01261
YP_001025999.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_001026000.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_001026001.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001026002.1	catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate
YP_001026004.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR03227
YP_001026005.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402
YP_001026006.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR03226
YP_001026007.1	identified by match to protein family HMM PF00528
YP_001026008.1	identified by match to protein family HMM PF01663; match to protein family HMM TIGR02335
YP_001026009.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR03250
YP_001026011.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_001026013.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_001026014.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_001026015.1	unwinds double stranded DNA
YP_001026016.1	identified by match to protein family HMM PF01865
YP_001026017.1	identified by match to protein family HMM PF01384
YP_001026018.1	identified by match to protein family HMM PF00877
YP_001026019.1	identified by match to protein family HMM PF02562
YP_001026021.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001026022.1	identified by match to protein family HMM PF01522
YP_001026023.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370
YP_001026024.1	identified by match to protein family HMM PF00551; match to protein family HMM PF02911
YP_001026025.1	identified by match to protein family HMM PF00535
YP_001026026.1	identified by match to protein family HMM PF01041; match to protein family HMM PF01212
YP_001026028.1	identified by match to protein family HMM PF02366
YP_001026029.1	identified by match to protein family HMM PF04430
YP_001026030.1	identified by match to protein family HMM PF00155
YP_001026031.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_001026032.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_001026033.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_001026034.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682
YP_001026035.1	identified by match to protein family HMM PF02391
YP_001026036.1	identified by match to protein family HMM PF01152
YP_001026037.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_001026039.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_001026040.1	identified by match to protein family HMM PF06078
YP_001026042.1	identified by match to protein family HMM PF00376; match to protein family HMM PF09278
YP_001026043.1	identified by match to protein family HMM PF02627
YP_001026044.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001026047.1	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_001026048.1	identified by match to protein family HMM PF06167
YP_001026049.1	identified by match to protein family HMM PF07690
YP_001026050.1	identified by match to protein family HMM PF00376
YP_001026051.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_001026053.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_001026054.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_001026055.1	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103
YP_001026056.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_001026057.1	identified by match to protein family HMM PF02515
YP_001026059.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_001026060.1	identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080
YP_001026061.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_001026062.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses
YP_001026065.1	identified by match to protein family HMM PF03372
YP_001026066.1	in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]
YP_001026067.1	identified by match to protein family HMM PF01027
YP_001026068.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_001026069.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048
YP_001026071.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_001026072.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_001026075.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_001026076.1	Stimulates the elongation of poly(A) tails
YP_001026077.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156
YP_001026078.1	identified by match to protein family HMM PF01145; match to protein family HMM TIGR01933
YP_001026079.1	identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932
YP_001026081.1	May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_001026082.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_001026083.1	identified by match to protein family HMM PF00156
YP_001026085.1	identified by match to protein family HMM PF02705
YP_001026086.1	identified by match to protein family HMM PF00575
YP_001026089.1	identified by match to protein family HMM PF04325
YP_001026092.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_001026093.1	identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726
YP_001026094.1	identified by match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01838
YP_001026095.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_001026096.1	catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis
YP_001026097.1	identified by match to protein family HMM PF05233; match to protein family HMM PF07879; match to protein family HMM TIGR01848
YP_001026098.1	catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit
YP_001026099.1	identified by match to protein family HMM PF00294
YP_001026100.1	catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA
YP_001026102.1	catalyzes the formation of L-homocysteine from cystathionine
YP_001026103.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488
YP_001026106.1	identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245
YP_001026107.1	identified by match to protein family HMM PF00005
YP_001026108.1	identified by match to protein family HMM PF05170
YP_001026109.1	identified by match to protein family HMM PF00005
YP_001026111.1	identified by match to protein family HMM PF00171
YP_001026112.1	identified by match to protein family HMM PF03060
YP_001026113.1	identified by match to protein family HMM PF03922
YP_001026114.1	identified by match to protein family HMM PF06945
YP_001026115.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_001026116.1	identified by match to protein family HMM PF01547
YP_001026117.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187
YP_001026118.1	identified by match to protein family HMM PF00528
YP_001026119.1	identified by match to protein family HMM PF00528
YP_001026120.1	identified by match to protein family HMM PF01527
YP_001026121.1	identified by match to protein family HMM PF00665
YP_001026122.1	identified by match to protein family HMM PF01478
YP_001026123.1	identified by match to protein family HMM PF07811
YP_001026124.1	identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177
YP_001026125.1	identified by match to protein family HMM PF00263
YP_001026127.1	identified by match to protein family HMM PF00437
YP_001026128.1	identified by match to protein family HMM PF00482
YP_001026129.1	identified by match to protein family HMM PF00482
YP_001026130.1	identified by match to protein family HMM PF07719
YP_001026133.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_001026135.1	identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383
YP_001026139.1	identified by match to protein family HMM PF00501
YP_001026141.1	identified by match to protein family HMM PF00440
YP_001026142.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001026143.1	identified by match to protein family HMM PF00583
YP_001026144.1	identified by match to protein family HMM PF08857
YP_001026145.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740
YP_001026148.1	identified by match to protein family HMM PF04185
YP_001026149.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001026150.1	identified by match to protein family HMM PF01609
YP_001026151.1	identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063
YP_001026152.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186
YP_001026154.1	identified by match to protein family HMM PF01510
YP_001026155.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_001026156.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001026157.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408
YP_001026158.1	identified by match to protein family HMM PF00665
YP_001026159.1	identified by match to protein family HMM PF01804
YP_001026160.1	identified by match to protein family HMM PF01527
YP_001026161.1	identified by match to protein family HMM PF00665
YP_001026164.1	identified by match to protein family HMM PF08479
YP_001026168.1	identified by match to protein family HMM PF03969
YP_001026169.1	E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_001026170.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_001026171.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_001026172.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394
YP_001026174.1	identified by match to protein family HMM PF01047
YP_001026175.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001026176.1	identified by match to protein family HMM PF00529
YP_001026177.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001026178.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_001026179.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_001026180.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_001026181.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_001026182.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_001026183.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_001026184.1	identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281
YP_001026185.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001026188.1	identified by match to protein family HMM PF02698
YP_001026191.1	identified by match to protein family HMM PF03992
YP_001026192.1	identified by match to protein family HMM PF01527
YP_001026193.1	identified by match to protein family HMM PF00665
YP_001026198.1	identified by match to protein family HMM PF05665
YP_001026199.1	identified by match to protein family HMM PF00376
YP_001026200.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_001026201.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_001026202.2	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_001026203.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_001026204.1	identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168
YP_001026205.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_001026206.1	identified by match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_001026207.1	identified by match to protein family HMM PF01042
YP_001026208.1	identified by match to protein family HMM PF00561
YP_001026210.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001026211.1	identified by match to protein family HMM PF07366
YP_001026212.1	identified by match to protein family HMM PF01522
YP_001026213.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659
YP_001026214.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_001026215.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_001026216.1	identified by match to protein family HMM PF00196; match to protein family HMM PF08448
YP_001026219.1	identified by match to protein family HMM PF03061
YP_001026220.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659
YP_001026221.1	identified by match to protein family HMM PF01266; match to protein family HMM PF05187
YP_001026222.1	identified by match to protein family HMM PF01527
YP_001026223.1	identified by match to protein family HMM PF00665
YP_001026226.1	identified by match to protein family HMM PF02373
YP_001026227.1	identified by match to protein family HMM PF00550; match to protein family HMM PF00975
YP_001026229.1	identified by match to protein family HMM PF00267
YP_001026230.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_001026231.1	identified by match to protein family HMM PF00892
YP_001026233.1	identified by match to protein family HMM PF01584
YP_001026234.1	identified by match to protein family HMM PF00015
YP_001026236.1	activates fatty acids by binding to coenzyme A
YP_001026237.1	identified by match to protein family HMM PF07690
YP_001026238.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001026239.1	identified by match to protein family HMM PF04069
YP_001026240.1	identified by match to protein family HMM PF00528
YP_001026241.1	identified by match to protein family HMM PF00005
YP_001026242.1	identified by match to protein family HMM PF00528
YP_001026245.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905
YP_001026246.1	catalyzes the degradation of arginine to citruline and ammonia
YP_001026247.1	catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway
YP_001026248.1	reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_001026250.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001026251.1	identified by match to protein family HMM PF03928
YP_001026252.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001026253.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_001026254.1	identified by match to protein family HMM PF01047
YP_001026255.1	identified by match to protein family HMM PF01094
YP_001026257.1	identified by match to protein family HMM PF01047
YP_001026258.1	identified by match to protein family HMM PF07690
YP_001026260.1	identified by match to protein family HMM PF00041; match to protein family HMM PF02638
YP_001026261.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465
YP_001026262.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_001026263.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_001026264.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469
YP_001026266.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02435
YP_001026267.1	catalyzes the interconversion of precorrin-8X and hydrogenobyrinate
YP_001026268.1	catalyzes the formation of precorrin-3 from precorrin-2
YP_001026269.1	CbiG; identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466
YP_001026270.1	identified by match to protein family HMM PF00704; match to protein family HMM PF02839
YP_001026274.1	identified by match to protein family HMM PF02230
YP_001026277.1	identified by match to protein family HMM PF01078; match to protein family HMM PF07726; match to protein family HMM PF07728
YP_001026279.1	with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism
YP_001026280.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475
YP_001026281.1	identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802
YP_001026282.1	catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3
YP_001026283.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_001026284.1	identified by match to protein family HMM PF01656; match to protein family HMM PF07685
YP_001026287.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783
YP_001026289.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_001026290.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733
YP_001026291.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01194
YP_001026293.1	identified by match to protein family HMM PF01497
YP_001026295.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_001026296.1	identified by match to protein family HMM PF00005
YP_001026297.1	identified by match to protein family HMM PF02668
YP_001026298.1	identified by match to protein family HMM PF03621
YP_001026299.1	RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease
YP_001026301.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001026302.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782
YP_001026303.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001026304.1	identified by match to protein family HMM PF02653
YP_001026305.1	identified by match to protein family HMM PF00005
YP_001026306.1	identified by match to protein family HMM PF00532
YP_001026307.1	identified by match to protein family HMM PF00165
YP_001026310.1	identified by match to protein family HMM PF00733
YP_001026311.1	identified by match to protein family HMM PF00665
YP_001026312.1	identified by match to protein family HMM PF01527
YP_001026315.1	identified by match to protein family HMM PF00005
YP_001026317.1	identified by match to protein family HMM PF00345; match to protein family HMM PF02753
YP_001026319.1	MexX; AmrA; involved in resistance to antibiotics; periplasmic membrane fusion protein; functions along with MexY and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery
YP_001026320.1	identified by match to protein family HMM PF00440; match to protein family HMM PF08361
YP_001026322.1	identified by match to protein family HMM PF01551
YP_001026324.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001026325.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001026328.1	identified by match to protein family HMM PF00497
YP_001026330.1	identified by match to protein family HMM PF07811
YP_001026331.1	identified by match to protein family HMM PF07811
YP_001026332.1	identified by match to protein family HMM PF07719; match to protein family HMM PF07721
YP_001026333.1	identified by match to protein family HMM PF00482
YP_001026334.1	identified by match to protein family HMM PF00482
YP_001026335.1	identified by match to protein family HMM PF00437
YP_001026338.1	identified by match to protein family HMM PF00263
YP_001026339.1	identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177
YP_001026340.1	identified by match to protein family HMM PF01478
YP_001026341.1	identified by match to protein family HMM PF04964
YP_001026342.1	identified by match to protein family HMM PF00528
YP_001026343.1	identified by match to protein family HMM PF00005
YP_001026346.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883
YP_001026347.1	identified by match to protein family HMM PF04293
YP_001026348.1	identified by match to protein family HMM PF04285
YP_001026349.1	identified by match to protein family HMM PF06798; match to protein family HMM PF08298
YP_001026350.1	identified by match to protein family HMM PF00665
YP_001026351.1	identified by match to protein family HMM PF01527
YP_001026352.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001026353.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR00968
YP_001026354.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140
YP_001026355.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139
YP_001026356.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971
YP_001026358.1	Represses a number of genes involved in the response to DNA damage
YP_001026361.1	identified by match to protein family HMM PF00582
YP_001026362.1	involved in the export of lipooligosaccharides during nodulation
YP_001026363.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR01291
YP_001026365.1	identified by match to protein family HMM PF03773
YP_001026366.1	identified by match to protein family HMM PF00248
YP_001026367.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_001026368.1	identified by match to protein family HMM PF01638
YP_001026371.1	identified by match to protein family HMM PF00375
YP_001026373.1	identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742
YP_001026374.1	identified by match to protein family HMM PF00665
YP_001026375.1	identified by match to protein family HMM PF01527
YP_001026379.1	identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638
YP_001026380.1	identified by match to protein family HMM PF00005
YP_001026381.1	identified by match to protein family HMM PF00528
YP_001026382.1	catalyzes the release of sulfite from alkanesulfonates
YP_001026387.1	catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA
YP_001026388.1	identified by match to protein family HMM PF00893
YP_001026389.1	identified by match to protein family HMM PF03928
YP_001026390.1	identified by match to protein family HMM PF00293
YP_001026391.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_001026392.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_001026393.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_001026394.1	identified by match to protein family HMM PF00497
YP_001026395.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001026396.1	identified by match to protein family HMM PF01527
YP_001026397.1	identified by match to protein family HMM PF00665
YP_001026400.2	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_001026402.1	identified by match to protein family HMM PF01553; match to protein family HMM PF07690
YP_001026403.1	identified by match to protein family HMM PF00571
YP_001026405.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_001026406.1	identified by match to protein family HMM PF00258; match to protein family HMM PF03358
YP_001026408.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_001026409.1	identified by match to protein family HMM PF00149
YP_001026411.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001026412.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001026413.1	identified by match to protein family HMM PF04632
YP_001026414.1	identified by match to protein family HMM PF07869
YP_001026415.1	identified by match to protein family HMM PF00529
YP_001026417.1	identified by match to protein family HMM PF00015
YP_001026418.1	identified by match to protein family HMM PF07690
YP_001026419.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_001026420.1	identified by match to protein family HMM PF00580
YP_001026421.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_001026422.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_001026424.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF05226
YP_001026425.1	identified by match to protein family HMM PF01476
YP_001026426.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001026428.1	identified by match to protein family HMM PF01206
YP_001026429.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447
YP_001026430.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_001026431.1	identified by match to protein family HMM PF01380
YP_001026433.1	identified by match to protein family HMM PF02653
YP_001026434.1	identified by match to protein family HMM PF00005
YP_001026435.1	identified by match to protein family HMM PF00294
YP_001026436.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_001026437.1	identified by match to protein family HMM PF01261
YP_001026438.1	identified by match to protein family HMM PF06845
YP_001026439.1	identified by match to protein family HMM PF00005
YP_001026440.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02653
YP_001026441.1	identified by match to protein family HMM PF02653
YP_001026442.1	identified by match to protein family HMM PF03061
YP_001026444.1	identified by match to protein family HMM PF00465
YP_001026445.1	identified by match to protein family HMM PF01906
YP_001026446.1	identified by match to protein family HMM PF00293
YP_001026448.1	identified by match to protein family HMM PF00089
YP_001026449.1	identified by match to protein family HMM PF00665
YP_001026450.1	identified by match to protein family HMM PF01527
YP_001026451.1	identified by match to protein family HMM PF06779
YP_001026452.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001026453.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001026454.1	identified by match to protein family HMM PF02515
YP_001026457.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001026458.1	identified by match to protein family HMM PF00293
YP_001026460.1	identified by match to protein family HMM PF00933; match to protein family HMM PF01915
YP_001026463.1	identified by match to protein family HMM PF03150
YP_001026464.1	identified by match to protein family HMM PF04185
YP_001026465.1	enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity
YP_001026466.1	identified by match to protein family HMM PF00529
YP_001026468.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001026469.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001026471.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_001026472.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001026474.1	identified by match to protein family HMM PF05229
YP_001026475.1	identified by match to protein family HMM PF00577
YP_001026477.1	identified by match to protein family HMM PF05229
YP_001026478.1	identified by match to protein family HMM PF05229
YP_001026484.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001026485.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001026486.1	identified by match to protein family HMM PF04909
YP_001026487.1	identified by match to protein family HMM PF00816
YP_001026490.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_001026493.1	identified by match to protein family HMM PF01527
YP_001026494.1	identified by match to protein family HMM PF00665
YP_001026496.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_001026498.1	identified by match to protein family HMM PF05488
YP_001026500.1	identified by match to protein family HMM PF05947
YP_001026504.1	identified by match to protein family HMM PF00652; match to protein family HMM PF01344; match to protein family HMM PF09118
YP_001026508.1	identified by match to protein family HMM PF00816
YP_001026509.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001026510.1	identified by match to protein family HMM PF00691
YP_001026511.1	identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662
YP_001026513.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001026516.1	identified by match to protein family HMM PF05666
YP_001026518.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001026519.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001026527.1	identified by match to protein family HMM PF00041; match to protein family HMM TIGR01840
YP_001026531.1	identified by match to protein family HMM PF00128
YP_001026532.1	identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; match to protein family HMM TIGR02457
YP_001026533.1	identified by match to protein family HMM PF02922
YP_001026534.1	identified by match to protein family HMM PF02806; match to protein family HMM TIGR01515
YP_001026535.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100
YP_001026536.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402
YP_001026537.1	identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217
YP_001026538.1	identified by match to protein family HMM PF00128
YP_001026542.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001026543.1	identified by match to protein family HMM PF00376; match to protein family HMM PF02409; match to protein family HMM PF09278; match to protein family HMM TIGR00027
YP_001026544.1	identified by match to protein family HMM PF05488
YP_001026548.1	identified by match to protein family HMM PF00665
YP_001026549.1	identified by match to protein family HMM PF01527
YP_001026550.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_001026551.1	identified by match to protein family HMM PF00501
YP_001026557.1	identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249
YP_001026564.1	identified by match to protein family HMM PF02541
YP_001026565.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_001026566.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR02966
YP_001026567.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154
YP_001026568.1	identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135
YP_001026569.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_001026570.1	Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_001026571.1	part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_001026572.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975
YP_001026573.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_001026574.1	identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_001026575.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_001026576.1	identified by match to protein family HMM PF01728
YP_001026577.1	identified by match to protein family HMM PF01985
YP_001026579.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_001026580.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_001026581.1	identified by match to protein family HMM PF01810
YP_001026582.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_001026583.1	identified by match to protein family HMM PF00165
YP_001026586.1	identified by match to protein family HMM PF07690
YP_001026587.1	identified by match to protein family HMM PF01464; match to protein family HMM PF01476; match to protein family HMM PF06474
YP_001026589.1	identified by match to protein family HMM PF00753
YP_001026590.1	identified by match to protein family HMM PF08241
YP_001026591.1	identified by match to protein family HMM PF00075
YP_001026592.1	3'-5' exonuclease of DNA polymerase III
YP_001026593.1	identified by match to protein family HMM PF02694
YP_001026595.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001026596.1	identified by match to protein family HMM PF00043
YP_001026597.1	identified by match to protein family HMM PF01527
YP_001026598.1	identified by match to protein family HMM PF00665
YP_001026603.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR03131
YP_001026604.1	identified by match to protein family HMM PF01874; match to protein family HMM TIGR03132
YP_001026605.1	catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein
YP_001026606.1	identified by match to protein family HMM PF06833; match to protein family HMM TIGR03134
YP_001026607.1	The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A
YP_001026608.1	acyl carrier protein of malonate decarboxylase
YP_001026611.1	identified by match to protein family HMM PF03818
YP_001026612.1	identified by match to protein family HMM PF03817
YP_001026613.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001026614.1	identified by match to protein family HMM PF00725; match to protein family HMM PF02737
YP_001026615.1	catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP
YP_001026619.1	identified by match to protein family HMM PF00011
YP_001026620.1	identified by match to protein family HMM PF00011
YP_001026621.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001026623.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460
YP_001026626.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001026627.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001026629.1	identified by match to protein family HMM PF03055
YP_001026631.1	identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135
YP_001026632.1	identified by match to protein family HMM PF01037
YP_001026633.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001026634.1	identified by match to protein family HMM PF04299
YP_001026640.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001026646.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_001026647.1	identified by match to protein family HMM PF01547
YP_001026648.1	identified by match to protein family HMM PF00528
YP_001026651.1	identified by match to protein family HMM PF00528
YP_001026652.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402
YP_001026654.1	identified by match to protein family HMM PF00149
YP_001026656.1	identified by match to protein family HMM PF03988
YP_001026657.1	identified by match to protein family HMM PF07690
YP_001026658.1	identified by match to protein family HMM PF00892
YP_001026661.1	identified by match to protein family HMM PF00174
YP_001026663.1	identified by match to protein family HMM PF06764
YP_001026664.1	identified by match to protein family HMM TIGR02953
YP_001026665.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_001026666.1	identified by match to protein family HMM PF00665
YP_001026667.1	identified by match to protein family HMM PF01527
YP_001026670.1	identified by match to protein family HMM PF00892
YP_001026672.1	identified by match to protein family HMM PF00563
YP_001026673.1	identified by match to protein family HMM PF00472
YP_001026675.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609
YP_001026676.1	identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450
YP_001026678.1	identified by match to protein family HMM PF05976
YP_001026680.1	identified by match to protein family HMM PF00324
YP_001026683.1	identified by match to protein family HMM PF01547
YP_001026684.1	identified by match to protein family HMM PF00528
YP_001026685.1	identified by match to protein family HMM PF00005
YP_001026686.1	identified by match to protein family HMM PF01037
YP_001026689.1	identified by match to protein family HMM PF01370; match to protein family HMM PF05368
YP_001026690.1	identified by match to protein family HMM PF02082
YP_001026695.1	identified by match to protein family HMM PF00196
YP_001026698.1	identified by match to protein family HMM PF00246
YP_001026699.1	identified by match to protein family HMM PF03883
YP_001026701.1	catalyzes the transfer of an amino moiety
YP_001026702.1	identified by match to protein family HMM PF02798
YP_001026703.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001026704.1	identified by match to protein family HMM PF00300
YP_001026705.1	identified by match to protein family HMM PF01636
YP_001026706.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001026708.1	identified by match to protein family HMM PF01575
YP_001026709.1	identified by match to protein family HMM PF01575
YP_001026710.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001026711.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_001026712.1	identified by match to protein family HMM PF06676
YP_001026713.1	identified by match to protein family HMM PF00293
YP_001026715.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001026716.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001026717.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_001026718.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001026719.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001026720.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001026721.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001026722.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_001026723.1	identified by match to protein family HMM PF01512; match to protein family HMM TIGR01959
YP_001026724.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001026725.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001026726.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001026727.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_001026728.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001026729.1	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810
YP_001026730.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_001026731.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02824
YP_001026732.1	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726
YP_001026733.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_001026734.1	identified by match to protein family HMM PF01094
YP_001026736.1	identified by match to protein family HMM PF00484
YP_001026737.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_001026738.1	identified by match to protein family HMM PF00682; match to protein family HMM PF08502
YP_001026739.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473
YP_001026740.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_001026741.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_001026742.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_001026743.1	acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate
YP_001026744.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001026747.1	identified by match to protein family HMM PF06271
YP_001026748.1	identified by match to protein family HMM PF00149
YP_001026749.1	identified by match to protein family HMM PF00534
YP_001026750.1	identified by match to protein family HMM PF01219
YP_001026751.1	identified by match to protein family HMM PF00440
YP_001026752.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_001026753.1	Converts glucose to D-glucono-1,5 lactone
YP_001026756.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001026757.1	identified by match to protein family HMM PF01610
YP_001026758.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_001026759.1	identified by match to protein family HMM PF06041
YP_001026760.1	identified by match to protein family HMM PF07973
YP_001026762.1	identified by match to protein family HMM PF01152
YP_001026764.1	identified by match to protein family HMM PF02687
YP_001026767.1	identified by match to protein family HMM PF00893
YP_001026768.1	identified by match to protein family HMM PF03891
YP_001026769.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001026770.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702
YP_001026772.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex
YP_001026773.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_001026774.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_001026777.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001026778.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_001026779.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001026780.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_001026782.1	identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033
YP_001026783.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_001026784.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_001026785.1	catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP
YP_001026786.1	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090
YP_001026787.1	SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_001026788.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_001026789.1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
YP_001026791.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173
YP_001026800.1	identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02957
YP_001026801.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_001026804.1	identified by match to protein family HMM PF07690
YP_001026807.1	identified by match to protein family HMM PF00535
YP_001026808.1	identified by match to protein family HMM PF01075
YP_001026809.1	identified by match to protein family HMM PF00534
YP_001026811.1	identified by match to protein family HMM PF01075
YP_001026812.1	identified by match to protein family HMM PF00534
YP_001026813.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203
YP_001026814.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_001026816.1	identified by match to protein family HMM PF00581
YP_001026817.1	this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu
YP_001026818.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_001026822.1	non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis
YP_001026824.1	identified by match to protein family HMM PF03724
YP_001026825.1	identified by match to protein family HMM PF01580
YP_001026828.1	identified by match to protein family HMM PF00723
YP_001026830.1	identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849
YP_001026831.1	identified by match to protein family HMM PF00440
YP_001026832.1	Involved in the electron transport chain
YP_001026833.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083
YP_001026834.1	identified by match to protein family HMM PF00892
YP_001026835.1	identified by match to protein family HMM PF08897
YP_001026836.1	identified by match to protein family HMM PF01610
YP_001026837.1	identified by match to protein family HMM PF00034
YP_001026838.1	identified by match to protein family HMM PF00034
YP_001026839.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07728
YP_001026841.1	identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843
YP_001026842.2	identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874
YP_001026843.1	identified by match to protein family HMM PF00903; match to protein family HMM PF06983
YP_001026844.1	identified by match to protein family HMM PF00474
YP_001026848.1	identified by match to protein family HMM PF04345
YP_001026849.1	molecular chaperone
YP_001026850.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001026852.1	identified by match to protein family HMM PF00892
YP_001026853.1	identified by match to protein family HMM PF00155
YP_001026854.1	identified by match to protein family HMM PF01527
YP_001026855.1	identified by match to protein family HMM PF00665
YP_001026857.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001026858.1	identified by match to protein family HMM PF00596
YP_001026859.1	identified by match to protein family HMM PF00701
YP_001026860.1	identified by match to protein family HMM PF03473
YP_001026861.1	identified by match to protein family HMM PF00561
YP_001026862.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001026863.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001026864.1	identified by match to protein family HMM PF04234
YP_001026865.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_001026867.1	identified by match to protein family HMM PF01370
YP_001026868.1	catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose
YP_001026869.1	DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_001026870.1	identified by match to protein family HMM PF00583
YP_001026872.1	identified by match to protein family HMM PF00005
YP_001026873.1	identified by match to protein family HMM PF00005
YP_001026874.1	identified by match to protein family HMM PF02653
YP_001026876.1	identified by match to protein family HMM PF01527
YP_001026877.1	identified by match to protein family HMM PF00665
YP_001026879.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_001026880.1	identified by match to protein family HMM PF03061
YP_001026883.1	identified by match to protein family HMM PF01022
YP_001026886.1	identified by match to protein family HMM PF01609
YP_001026887.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_001026888.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001026892.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001026893.1	identified by match to protein family HMM PF00186
YP_001026894.1	identified by match to protein family HMM PF01609
YP_001026895.1	identified by match to protein family HMM PF01523
YP_001026896.1	identified by match to protein family HMM PF04751
YP_001026897.1	forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis
YP_001026898.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_001026899.1	identified by match to protein family HMM PF01435
YP_001026900.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_001026902.1	catalyzes the formation of adenosylcobinamide-phosphate from adenosylcobyric acid
YP_001026903.1	identified by match to protein family HMM PF00293
YP_001026905.1	identified by match to protein family HMM PF00583
YP_001026906.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_001026907.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_001026908.1	Essential for efficient processing of 16S rRNA
YP_001026909.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_001026913.1	identified by match to protein family HMM PF04055
YP_001026914.1	identified by match to protein family HMM PF01037
YP_001026915.1	identified by match to protein family HMM PF00665
YP_001026916.1	identified by match to protein family HMM PF01527
YP_001026917.1	catalyzes the oxidative deamination of D-amino acids
YP_001026919.1	identified by match to protein family HMM PF02770
YP_001026920.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_001026921.1	identified by match to protein family HMM PF01012
YP_001026922.1	identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363
YP_001026923.1	identified by match to protein family HMM PF00528
YP_001026924.1	part of the metNIQ transport system for methionine
YP_001026925.1	identified by match to protein family HMM PF00561
YP_001026926.1	identified by match to protein family HMM PF00850
YP_001026927.1	identified by match to protein family HMM TIGR02282
YP_001026928.1	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide
YP_001026930.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197
YP_001026931.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR02198
YP_001026932.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_001026933.1	identified by match to protein family HMM PF00515
YP_001026935.1	identified by match to protein family HMM PF01609
YP_001026936.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_001026937.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_001026938.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_001026939.1	fusion of tyrA/aroA
YP_001026940.1	identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807
YP_001026941.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_001026943.1	negatively supercoils closed circular double-stranded DNA
YP_001026945.1	identified by match to protein family HMM PF00691
YP_001026946.1	Involved in ubiquinone biosynthesis
YP_001026947.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_001026948.1	identified by match to protein family HMM PF01527
YP_001026949.1	identified by match to protein family HMM PF00665
YP_001026952.1	identified by match to protein family HMM PF00126
YP_001026955.1	identified by match to protein family HMM PF01512
YP_001026956.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591
YP_001026958.1	identified by match to protein family HMM PF01494
YP_001026959.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721
YP_001026960.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001026962.1	identified by match to protein family HMM PF00117; match to protein family HMM PF07722
YP_001026964.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_001026965.1	disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein
YP_001026967.1	identified by match to protein family HMM PF02625; match to protein family HMM TIGR02964
YP_001026968.1	catalyzes the formation of inosine from adenosine
YP_001026969.1	identified by match to protein family HMM PF00860
YP_001026970.1	Catalyzes the deamination of guanine
YP_001026972.1	identified by match to protein family HMM PF01169
YP_001026975.1	identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414
YP_001026977.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_001026978.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001026979.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_001026980.1	identified by match to protein family HMM PF01610
YP_001026985.1	identified by match to protein family HMM PF04226
YP_001026987.1	identified by match to protein family HMM PF02012
YP_001026988.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715
YP_001026993.1	catalyzes the interconversion of chorismate to prephenate
YP_001026996.1	identified by match to protein family HMM PF01527
YP_001026997.1	identified by match to protein family HMM PF00665
YP_001026999.1	identified by match to protein family HMM PF01527
YP_001027000.1	identified by match to protein family HMM PF00665
YP_001027001.1	identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093
YP_001027002.1	Converts isocitrate to alpha ketoglutarate
YP_001027003.1	identified by match to protein family HMM PF07731; match to protein family HMM PF07732
YP_001027004.1	identified by match to protein family HMM PF01609
YP_001027005.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_001027006.1	identified by match to protein family HMM PF00254
YP_001027007.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_001027008.1	required for 70S ribosome assembly
YP_001027009.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_001027010.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_001027012.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_001027013.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_001027015.1	identified by match to protein family HMM PF00487
YP_001027016.1	identified by match to protein family HMM PF00924
YP_001027017.1	identified by match to protein family HMM PF01189
YP_001027018.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_001027019.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_001027020.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme
YP_001027021.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_001027022.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_001027023.1	catalyzes the formation of dUMP from dUTP
YP_001027024.1	identified by match to protein family HMM PF03988
YP_001027027.1	identified by match to protein family HMM PF00665
YP_001027028.1	identified by match to protein family HMM PF01527
YP_001027029.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_001027030.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_001027032.1	Transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_001027033.1	identified by match to protein family HMM PF03966
YP_001027034.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_001027035.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_001027036.1	identified by match to protein family HMM PF01609
YP_001027037.1	identified by match to protein family HMM PF00313
YP_001027038.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_001027039.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639
YP_001027040.1	identified by match to protein family HMM PF00665
YP_001027041.1	identified by match to protein family HMM PF01527
YP_001027044.1	identified by match to protein family HMM PF00155; match to protein family HMM PF01212
YP_001027045.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_001027046.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF08240; match to protein family HMM PF08242; match to protein family HMM PF08659
YP_001027047.1	identified by match to protein family HMM PF00884
YP_001027048.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001027049.1	identified by match to protein family HMM PF05159
YP_001027050.1	identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662
YP_001027051.1	identified by match to protein family HMM PF00483
YP_001027052.1	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate
YP_001027053.1	identified by match to protein family HMM PF00288; match to protein family HMM PF08544
YP_001027054.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001027056.1	identified by match to protein family HMM PF00534
YP_001027059.1	identified by match to protein family HMM PF00534
YP_001027060.1	identified by match to protein family HMM PF00005
YP_001027061.1	identified by match to protein family HMM PF01061
YP_001027063.1	identified by match to protein family HMM PF02563
YP_001027065.1	identified by match to protein family HMM PF05159
YP_001027066.1	identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479
YP_001027067.1	identified by match to protein family HMM PF00310
YP_001027068.1	identified by match to protein family HMM PF00924
YP_001027069.1	identified by match to protein family HMM PF09335
YP_001027070.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_001027071.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_001027072.1	identified by match to protein family HMM TIGR02246
YP_001027073.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_001027075.1	identified by match to protein family HMM PF00308
YP_001027076.1	identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_001027077.1	identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942
YP_001027078.1	identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498
YP_001027079.1	identified by match to protein family HMM PF01712
YP_001027080.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_001027081.1	identified by match to protein family HMM PF00425
YP_001027082.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_001027084.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_001027086.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_001027088.1	identified by match to protein family HMM PF01479
YP_001027089.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_001027090.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_001027091.1	catalyzes the phosphorylation of NAD to NADP
YP_001027092.1	identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634
YP_001027093.1	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme
YP_001027094.1	identified by match to protein family HMM TIGR02099
YP_001027095.1	identified by match to protein family HMM PF00795
YP_001027096.1	identified by match to protein family HMM PF01523
YP_001027098.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_001027099.1	identified by match to protein family HMM PF01609
YP_001027100.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_001027101.1	forms a direct contact with the tRNA during translation
YP_001027102.1	essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors
YP_001027103.1	identified by match to protein family HMM PF00165
YP_001027104.1	identified by match to protein family HMM PF02798
YP_001027105.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_001027106.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_001027108.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_001027109.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_001027110.1	identified by match to protein family HMM PF00300
YP_001027111.1	identified by match to protein family HMM PF08857
YP_001027113.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_001027114.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_001027115.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_001027116.1	involved in de novo purine biosynthesis
YP_001027117.1	identified by match to protein family HMM PF02954
YP_001027118.1	identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737
YP_001027119.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988
YP_001027120.1	identified by match to protein family HMM PF00557; match to protein family HMM PF05195
YP_001027122.1	identified by match to protein family HMM PF02798
YP_001027123.1	identified by match to protein family HMM PF01609
YP_001027124.1	identified by match to protein family HMM PF01645
YP_001027125.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_001027126.1	identified by match to protein family HMM PF00293
YP_001027127.1	identified by match to protein family HMM PF01262; match to protein family HMM PF05222
YP_001027129.1	identified by match to protein family HMM PF02233
YP_001027131.1	identified by match to protein family HMM PF08279
YP_001027135.1	identified by match to protein family HMM PF01170; match to protein family HMM PF02926
YP_001027138.1	identified by match to protein family HMM PF03886
YP_001027139.1	identified by match to protein family HMM PF02470
YP_001027140.1	identified by match to protein family HMM PF04403
YP_001027141.1	identified by match to protein family HMM PF04403
YP_001027142.1	identified by match to protein family HMM PF01292
YP_001027143.1	identified by match to protein family HMM PF04264
YP_001027144.1	identified by match to protein family HMM PF04264
YP_001027147.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_001027148.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_001027149.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_001027150.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_001027151.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_001027152.1	catalyzes branch migration in Holliday junction intermediates
YP_001027153.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001027154.1	identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198
YP_001027156.1	identified by match to protein family HMM PF00210
YP_001027157.1	identified by match to protein family HMM PF01638
YP_001027158.1	catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway
YP_001027159.1	identified by match to protein family HMM TIGR02322
YP_001027160.1	identified by match to protein family HMM TIGR03223
YP_001027161.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02325
YP_001027162.1	identified by match to protein family HMM PF06754
YP_001027163.1	identified by match to protein family HMM PF05845
YP_001027164.1	identified by match to protein family HMM PF05861
YP_001027165.1	identified by match to protein family HMM PF06007
YP_001027166.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02323
YP_001027167.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02324
YP_001027168.1	identified by match to protein family HMM PF07969; match to protein family HMM TIGR02318
YP_001027169.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315
YP_001027170.1	identified by match to protein family HMM TIGR01098
YP_001027172.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097
YP_001027173.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_001027174.1	identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044
YP_001027175.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02754
YP_001027176.1	identified by match to protein family HMM PF01565
YP_001027177.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_001027178.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_001027179.1	identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636
YP_001027180.1	identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_001027181.1	identified by match to protein family HMM PF01609
YP_001027182.1	identified by match to protein family HMM PF02566
YP_001027184.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_001027186.1	identified by match to protein family HMM PF00310
YP_001027188.1	identified by match to protein family HMM PF00011
YP_001027189.1	identified by match to protein family HMM PF00011
YP_001027190.1	identified by match to protein family HMM PF00166
YP_001027193.1	identified by match to protein family HMM PF00005
YP_001027194.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001027195.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001027196.1	identified by match to protein family HMM PF00208; match to protein family HMM PF02812
YP_001027198.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001027199.1	identified by match to protein family HMM PF07690
YP_001027200.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_001027201.1	identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313
YP_001027202.1	identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791
YP_001027204.1	identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182
YP_001027205.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_001027207.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001027209.1	identified by match to protein family HMM PF03653
YP_001027210.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_001027211.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_001027213.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_001027214.1	identified by match to protein family HMM PF02472
YP_001027215.1	identified by match to protein family HMM PF01618
YP_001027216.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_001027217.1	identified by match to protein family HMM PF04355
YP_001027218.1	identified by match to protein family HMM PF01475
YP_001027219.1	identified by match to protein family HMM PF04115
YP_001027221.2	catalyzes the formation of S-ureidoglycolate and urea from allantoate
YP_001027222.1	identified by match to protein family HMM PF00375
YP_001027223.1	identified by match to protein family HMM PF00665
YP_001027224.1	identified by match to protein family HMM PF01527
YP_001027225.1	identified by match to protein family HMM PF00375
YP_001027226.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001027227.1	controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source
YP_001027228.1	identified by match to protein family HMM PF00484
YP_001027229.1	catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide
YP_001027230.1	identified by match to protein family HMM PF07690
YP_001027232.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_001027233.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_001027234.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_001027235.1	identified by match to protein family HMM PF00903
YP_001027236.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_001027239.1	identified by match to protein family HMM PF00545
YP_001027240.1	NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate
YP_001027241.1	catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP
YP_001027242.1	identified by match to protein family HMM PF04608
YP_001027243.1	identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199
YP_001027245.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_001027246.1	identified by match to protein family HMM PF01263
YP_001027247.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659
YP_001027248.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_001027249.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_001027250.1	identified by match to protein family HMM PF00532; match to protein family HMM TIGR01409
YP_001027251.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001027252.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism
YP_001027253.1	identified by match to protein family HMM PF05035
YP_001027254.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001027257.1	glycosyltransferase; polymerizes glycan strands in the peptidoglycan
YP_001027258.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_001027259.1	identified by match to protein family HMM PF00773
YP_001027260.1	identified by match to protein family HMM PF05728
YP_001027261.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01081
YP_001027263.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001027264.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_001027265.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_001027266.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_001027267.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_001027268.1	identified by match to protein family HMM TIGR02098
YP_001027269.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001027270.1	identified by match to protein family HMM PF00294
YP_001027271.1	identified by match to protein family HMM PF05433
YP_001027273.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_001027274.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_001027276.1	identified by match to protein family HMM PF01510
YP_001027278.1	identified by match to protein family HMM PF01578
YP_001027279.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_001027280.1	Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively
YP_001027281.1	identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427
YP_001027282.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_001027283.1	hydrolyzes diadenosine polyphosphate
YP_001027284.1	identified by match to protein family HMM PF08750
YP_001027285.1	identified by match to protein family HMM PF01609
YP_001027286.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_001027287.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_001027288.1	involved in the peptidyltransferase reaction during translation
YP_001027289.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_001027290.1	identified by match to protein family HMM PF00348
YP_001027291.1	identified by match to protein family HMM PF00665
YP_001027292.1	identified by match to protein family HMM PF01527
YP_001027293.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_001027294.1	identified by match to protein family HMM PF00437
YP_001027295.1	identified by match to protein family HMM PF00482
YP_001027296.1	identified by match to protein family HMM PF01478; match to protein family HMM PF06750
YP_001027297.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_001027298.1	identified by match to protein family HMM PF07072
YP_001027299.1	identified by match to protein family HMM PF03884
YP_001027300.1	identified by match to protein family HMM PF00293
YP_001027301.1	identified by match to protein family HMM PF05673
YP_001027302.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_001027303.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_001027306.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_001027307.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001027308.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_001027310.1	identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174
YP_001027311.1	identified by match to protein family HMM PF03799; match to protein family HMM PF08478
YP_001027312.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_001027313.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_001027314.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_001027315.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614
YP_001027316.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_001027317.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_001027318.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143
YP_001027319.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_001027320.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_001027321.1	identified by match to protein family HMM TIGR02209
YP_001027322.1	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_001027323.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_001027325.1	identified by match to protein family HMM PF00267
YP_001027326.1	identified by match to protein family HMM PF01609
YP_001027327.1	identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082
YP_001027328.1	identified by match to protein family HMM PF02574
YP_001027331.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001027332.1	identified by match to protein family HMM PF01557
YP_001027333.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001027335.1	identified by match to protein family HMM PF01734
YP_001027338.1	identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199
YP_001027340.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_001027341.2	catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon
YP_001027342.1	identified by match to protein family HMM PF08238
YP_001027343.1	identified by match to protein family HMM PF00149; match to protein family HMM PF02872
YP_001027344.1	identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056
YP_001027345.1	identified by match to protein family HMM PF00005
YP_001027346.1	identified by match to protein family HMM PF02470
YP_001027352.1	identified by match to protein family HMM PF00768; match to protein family HMM PF07943
YP_001027353.1	identified by match to protein family HMM PF01063
YP_001027354.1	identified by match to protein family HMM PF04359
YP_001027355.1	Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence
YP_001027357.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_001027358.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_001027359.1	identified by match to protein family HMM PF01609
YP_001027362.1	identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066
YP_001027364.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001027365.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; match to protein family HMM PF03446
YP_001027366.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_001027367.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001027368.1	identified by match to protein family HMM PF02515
YP_001027370.1	identified by match to protein family HMM PF04341
YP_001027371.1	member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake
YP_001027372.1	involved in the transport of C4-dicarboxylates across the membrane
YP_001027374.1	identified by match to protein family HMM PF02518
YP_001027375.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001027376.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001027378.1	identified by match to protein family HMM PF00975
YP_001027380.1	identified by match to protein family HMM PF00583
YP_001027381.1	identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368
YP_001027382.1	identified by match to protein family HMM PF04380
YP_001027383.1	identified by match to protein family HMM PF00543
YP_001027384.1	identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836
YP_001027385.1	identified by match to protein family HMM PF01609
YP_001027386.1	identified by match to protein family HMM PF08886; match to protein family HMM TIGR02049
YP_001027387.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_001027388.1	identified by match to protein family HMM PF03610
YP_001027389.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_001027390.1	identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417
YP_001027392.1	identified by match to protein family HMM PF00899; match to protein family HMM PF05237
YP_001027393.1	identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225
YP_001027394.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_001027395.1	identified by match to protein family HMM PF00581
YP_001027396.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181
YP_001027397.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_001027398.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_001027399.1	identified by match to protein family HMM PF01661
YP_001027401.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185
YP_001027403.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001027405.1	identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF00691; match to protein family HMM PF02790; match to protein family HMM TIGR02866
YP_001027406.1	identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891
YP_001027408.1	involved in the insertion of copper into subunit I of cytochrome C oxidase
YP_001027410.1	identified by match to protein family HMM PF00510
YP_001027414.1	identified by match to protein family HMM PF02628
YP_001027415.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_001027416.1	identified by match to protein family HMM PF00578; match to protein family HMM PF02630
YP_001027417.1	identified by match to protein family HMM PF03795
YP_001027418.1	identified by match to protein family HMM PF00015; match to protein family HMM PF08269
YP_001027420.1	identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363
YP_001027421.1	identified by match to protein family HMM PF01609
YP_001027422.1	identified by match to protein family HMM PF01610
YP_001027424.1	identified by match to protein family HMM PF01654
YP_001027425.1	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203
YP_001027426.1	identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106
YP_001027428.1	identified by match to protein family HMM PF00728; match to protein family HMM PF03173
YP_001027429.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998
YP_001027430.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR00830; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417
YP_001027431.1	identified by match to protein family HMM PF01380
YP_001027432.1	identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221
YP_001027433.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_001027434.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001027435.1	identified by match to protein family HMM PF00501
YP_001027442.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784
YP_001027443.1	identified by match to protein family HMM PF00501; match to protein family HMM TIGR03098
YP_001027445.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001027447.1	identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001027448.1	identified by match to protein family HMM PF02668
YP_001027449.1	identified by match to protein family HMM PF00005
YP_001027450.1	identified by match to protein family HMM PF01061
YP_001027452.1	identified by match to protein family HMM PF00202; match to protein family HMM TIGR00709
YP_001027453.1	identified by match to protein family HMM PF00487
YP_001027455.1	identified by match to protein family HMM PF07690
YP_001027457.1	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.
YP_001027460.1	identified by match to protein family HMM PF00005
YP_001027461.1	identified by match to protein family HMM PF02653
YP_001027462.1	identified by match to protein family HMM PF04392
YP_001027463.1	identified by match to protein family HMM PF01609
YP_001027464.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters
YP_001027466.1	identified by match to protein family HMM TIGR02246
YP_001027467.1	identified by match to protein family HMM PF00682; match to protein family HMM TIGR00970
YP_001027469.1	identified by match to protein family HMM PF00583
YP_001027470.1	identified by match to protein family HMM PF02885
YP_001027471.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879
YP_001027472.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378
YP_001027473.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374
YP_001027475.1	identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262
YP_001027477.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_001027478.1	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095
YP_001027480.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_001027481.1	identified by match to protein family HMM PF00037
YP_001027482.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_001027483.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_001027484.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_001027485.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_001027486.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_001027487.1	Incorporates lipoproteins in the outer membrane after they are released by the LolA protein
YP_001027488.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07721
YP_001027489.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_001027490.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084
YP_001027491.1	identified by match to protein family HMM PF02190
YP_001027492.1	identified by match to protein family HMM PF03668
YP_001027493.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_001027494.1	identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419
YP_001027495.1	identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741
YP_001027496.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_001027497.1	identified by match to protein family HMM PF00005
YP_001027498.1	identified by match to protein family HMM PF03968; match to protein family HMM TIGR03002
YP_001027499.1	identified by match to protein family HMM PF06835
YP_001027500.1	identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670
YP_001027501.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393
YP_001027502.1	identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254
YP_001027503.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_001027504.1	identified by match to protein family HMM PF01810
YP_001027505.1	identified by match to protein family HMM PF00293
YP_001027506.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_001027509.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630
YP_001027510.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001027511.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_001027512.1	identified by match to protein family HMM PF01527
YP_001027513.1	identified by match to protein family HMM PF00665
YP_001027514.1	identified by match to protein family HMM PF00589
YP_001027515.1	identified by match to protein family HMM PF00034
YP_001027516.1	identified by match to protein family HMM PF00580
YP_001027520.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894
YP_001027523.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_001027524.1	identified by match to protein family HMM PF00364; match to protein family HMM PF01597; match to protein family HMM TIGR00527
YP_001027525.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_001027527.1	identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720
YP_001027529.1	catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit
YP_001027531.1	identified by match to protein family HMM PF00165
YP_001027533.1	identified by match to protein family HMM PF00171
YP_001027535.1	catalyzes the formation of acetaldehyde from ethanolamine
YP_001027536.1	identified by match to protein family HMM PF06751
YP_001027537.1	identified by match to protein family HMM PF01609
YP_001027538.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR00908
YP_001027539.1	identified by match to protein family HMM PF01757
YP_001027541.1	identified by match to protein family HMM PF05552
YP_001027544.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_001027545.1	identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02047
YP_001027546.1	identified by match to protein family HMM PF03551
YP_001027549.1	identified by match to protein family HMM PF00497
YP_001027550.1	catalyzes the transfer of an amino moiety
YP_001027552.1	identified by match to protein family HMM PF00440
YP_001027553.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001027554.1	identified by match to protein family HMM PF00501
YP_001027555.1	identified by match to protein family HMM PF01094
YP_001027556.1	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein
YP_001027559.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_001027560.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_001027561.1	identified by match to protein family HMM PF00497
YP_001027564.1	activates fatty acids by binding to coenzyme A
YP_001027565.1	identified by match to protein family HMM PF01609
YP_001027566.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_001027567.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_001027568.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_001027569.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_001027570.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_001027571.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_001027572.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_001027573.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_001027575.1	identified by match to protein family HMM PF03600
YP_001027576.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_001027577.1	identified by match to protein family HMM PF01656
YP_001027578.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_001027579.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_001027580.1	identified by match to protein family HMM PF00005
YP_001027581.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02653
YP_001027582.1	identified by match to protein family HMM PF02653
YP_001027583.1	identified by match to protein family HMM PF01094
YP_001027585.1	identified by match to protein family HMM PF02653
YP_001027586.1	identified by match to protein family HMM PF02653
YP_001027587.1	identified by match to protein family HMM PF01094
YP_001027588.1	identified by match to protein family HMM PF00005
YP_001027589.1	identified by match to protein family HMM PF00005
YP_001027590.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_001027591.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_001027593.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001027594.1	identified by match to protein family HMM PF01928
YP_001027595.1	identified by match to protein family HMM PF01037
YP_001027596.1	phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin
YP_001027597.1	4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction
YP_001027599.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001027600.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521
YP_001027601.1	identified by match to protein family HMM PF00856
YP_001027602.1	identified by match to protein family HMM PF00724
YP_001027603.1	Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group
YP_001027604.1	identified by match to protein family HMM PF01022; match to protein family HMM PF01047
YP_001027606.1	ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity
YP_001027607.1	identified by match to protein family HMM PF00999
YP_001027608.1	catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules
YP_001027609.1	identified by match to protein family HMM PF00216
YP_001027610.1	identified by match to protein family HMM PF01609
YP_001027611.1	identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413
YP_001027612.1	identified by match to protein family HMM PF00753
YP_001027614.1	identified by match to protein family HMM PF01037
YP_001027615.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_001027616.1	identified by match to protein family HMM PF00816
YP_001027617.1	identified by match to protein family HMM PF01243
YP_001027618.1	identified by match to protein family HMM PF07690
YP_001027619.1	identified by match to protein family HMM PF01094
YP_001027621.1	identified by match to protein family HMM PF00665
YP_001027622.1	identified by match to protein family HMM PF01527
YP_001027625.1	identified by match to protein family HMM PF03067
YP_001027626.1	identified by match to protein family HMM PF01565; match to protein family HMM PF08031
YP_001027628.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM PF03964
YP_001027631.1	identified by match to protein family HMM PF03783
YP_001027633.1	identified by match to protein family HMM PF05643
YP_001027635.1	identified by match to protein family HMM PF04185; match to protein family HMM TIGR01409
YP_001027637.1	identified by match to protein family HMM PF01810
YP_001027641.1	identified by match to protein family HMM PF00355
YP_001027642.1	identified by match to protein family HMM PF00132
YP_001027643.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001027644.1	identified by match to protein family HMM PF08541; match to protein family HMM PF08545
YP_001027646.1	identified by match to protein family HMM PF08541; match to protein family HMM PF08545
YP_001027647.1	identified by match to protein family HMM PF01041; match to protein family HMM PF01212
YP_001027648.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001027650.1	identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196
YP_001027651.1	structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus
YP_001027652.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_001027653.1	identified by match to protein family HMM PF03352
YP_001027654.1	identified by match to protein family HMM PF01869
YP_001027655.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_001027656.1	porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure
YP_001027657.1	identified by match to protein family HMM PF00816
YP_001027658.1	identified by match to protein family HMM PF00534
YP_001027659.1	with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems
YP_001027660.1	With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems
YP_001027661.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_001027662.1	identified by match to protein family HMM PF00691
YP_001027663.1	identified by match to protein family HMM PF00072
YP_001027664.1	identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF09078
YP_001027665.1	identified by match to protein family HMM PF01584
YP_001027666.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001027667.1	identified by match to protein family HMM PF01739; match to protein family HMM PF03705
YP_001027668.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_001027669.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_001027670.1	identified by match to protein family HMM PF00072
YP_001027671.1	cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation
YP_001027674.1	identified by match to protein family HMM PF06983
YP_001027675.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_001027676.1	membrane protein involved in the flagellar export apparatus
YP_001027677.1	positive regulator of class III flagellar genes
YP_001027679.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes
YP_001027681.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_001027682.1	identified by match to protein family HMM PF04020
YP_001027683.1	identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676
YP_001027684.1	identified by match to protein family HMM PF01425
YP_001027685.1	identified by match to protein family HMM PF01738
YP_001027687.1	identified by match to protein family HMM PF03060
YP_001027688.1	identified by match to protein family HMM PF01527
YP_001027689.1	identified by match to protein family HMM PF00665
YP_001027690.1	identified by match to protein family HMM PF04965
YP_001027691.1	identified by match to protein family HMM PF05947
YP_001027692.1	identified by match to protein family HMM PF06996
YP_001027693.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_001027694.1	identified by match to protein family HMM PF06812
YP_001027695.1	identified by match to protein family HMM PF00691
YP_001027697.1	identified by match to protein family HMM PF06744; match to protein family HMM PF06761
YP_001027699.1	identified by match to protein family HMM PF02557
YP_001027701.1	identified by match to protein family HMM PF02321
YP_001027702.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412
YP_001027703.1	identified by match to protein family HMM PF00529
YP_001027707.1	identified by match to protein family HMM PF01433
YP_001027710.1	identified by match to protein family HMM PF01757
YP_001027712.1	identified by match to protein family HMM PF05175
YP_001027714.1	identified by match to protein family HMM PF07209
YP_001027715.1	identified by match to protein family HMM PF00440
YP_001027716.1	identified by match to protein family HMM PF07690
YP_001027718.1	identified by match to protein family HMM PF00881
YP_001027720.1	identified by match to protein family HMM PF01609
YP_001027721.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096
YP_001027722.1	identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252
YP_001027723.1	identified by match to protein family HMM TIGR00441
YP_001027724.1	identified by match to protein family HMM PF04972
YP_001027725.1	identified by match to protein family HMM PF00034
YP_001027726.1	identified by match to protein family HMM PF00324
YP_001027727.1	identified by match to protein family HMM PF00665
YP_001027728.1	identified by match to protein family HMM PF01527
YP_001027729.1	identified by match to protein family HMM PF00313
YP_001027730.1	identified by match to protein family HMM PF01609
YP_001027731.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_001027733.1	identified by match to protein family HMM PF05137
YP_001027735.1	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515
YP_001027736.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_001027737.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_001027738.1	dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_001027739.1	with UgpACE is involved in the uptake of glycerol-3-phosphate
YP_001027740.1	identified by match to protein family HMM PF00528
YP_001027741.1	with UgpABC is involved in uptake of glycerol-3-phosphate
YP_001027742.1	part of the UgpABCE glycerol-3-phosphate uptake system
YP_001027743.1	hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate
YP_001027744.1	identified by match to protein family HMM PF03922
YP_001027745.1	identified by match to protein family HMM PF07605
YP_001027746.1	identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898
YP_001027747.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_001027748.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001027749.1	identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258
YP_001027750.2	identified by match to protein family HMM PF00005; match to protein family HMM PF05992; match to protein family HMM PF06472
YP_001027752.1	identified by match to protein family HMM PF01266
YP_001027753.1	with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate
YP_001027754.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_001027755.1	identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693
YP_001027756.1	identified by match to protein family HMM PF00005
YP_001027757.1	identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056
YP_001027758.1	identified by match to protein family HMM PF02470
YP_001027759.1	identified by match to protein family HMM PF04333
YP_001027760.1	identified by match to protein family HMM PF05494
YP_001027762.1	identified by match to protein family HMM PF00005
YP_001027763.1	identified by match to protein family HMM PF01061
YP_001027764.1	identified by match to protein family HMM PF01722
YP_001027765.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001027766.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_001027767.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_001027768.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_001027769.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_001027770.1	identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427
YP_001027771.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_001027772.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_001027773.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_001027774.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_001027775.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_001027777.1	identified by match to protein family HMM PF01230
YP_001027778.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_001027779.1	identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410
YP_001027780.1	identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945
YP_001027782.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595
YP_001027783.1	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486
YP_001027784.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416
YP_001027785.1	identified by match to protein family HMM PF00033
YP_001027786.1	identified by match to protein family HMM PF02167
YP_001027787.1	identified by match to protein family HMM PF00462; match to protein family HMM PF02798
YP_001027788.1	identified by match to protein family HMM PF04386
YP_001027789.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540
YP_001027790.1	identified by match to protein family HMM TIGR02684
YP_001027791.1	identified by match to protein family HMM PF05973; match to protein family HMM TIGR02683
YP_001027792.1	identified by match to protein family HMM PF01527
YP_001027793.1	identified by match to protein family HMM PF00665
YP_001027798.1	identified by match to protein family HMM PF02515
YP_001027799.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_001027800.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_001027802.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001027803.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_001027804.1	identified by match to protein family HMM PF07848; match to protein family HMM PF08223
YP_001027805.1	identified by match to protein family HMM PF00487
YP_001027809.1	identified by match to protein family HMM PF03551
YP_001027810.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_001027811.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001027814.1	identified by match to protein family HMM PF00171
YP_001027816.1	identified by match to protein family HMM PF02653
YP_001027817.1	identified by match to protein family HMM PF02653
YP_001027818.1	identified by match to protein family HMM PF00005
YP_001027819.1	identified by match to protein family HMM PF00005
YP_001027820.1	identified by match to protein family HMM PF00165
YP_001027823.1	identified by match to protein family HMM PF04851
YP_001027824.1	identified by match to protein family HMM PF01555
YP_001027828.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001027829.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08521
YP_001027830.1	identified by match to protein family HMM PF00528
YP_001027831.1	identified by match to protein family HMM PF00005
YP_001027832.1	identified by match to protein family HMM PF09084
YP_001027834.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001027835.1	identified by match to protein family HMM PF00376; match to protein family HMM PF09278
YP_001027836.1	identified by match to protein family HMM PF01311; match to protein family HMM TIGR01400
YP_001027837.1	with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus
YP_001027838.1	identified by match to protein family HMM PF00665
YP_001027839.1	identified by match to protein family HMM PF01527
YP_001027840.1	identified by match to protein family HMM PF04347
YP_001027841.1	identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480
YP_001027842.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_001027843.1	interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring
YP_001027845.1	identified by match to protein family HMM PF04172
YP_001027846.1	identified by match to protein family HMM PF03788
YP_001027848.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001027850.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001027851.1	identified by match to protein family HMM PF01047
YP_001027853.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001027855.1	identified by match to protein family HMM PF04612
YP_001027856.1	identified by match to protein family HMM PF05134; match to protein family HMM TIGR01709
YP_001027857.1	identified by match to protein family HMM PF03934
YP_001027858.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_001027859.1	identified by match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532
YP_001027860.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532
YP_001027861.1	identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532
YP_001027863.1	identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120
YP_001027864.1	identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533
YP_001027865.1	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517
YP_001027866.1	identified by match to protein family HMM PF01464
YP_001027868.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_001027869.1	identified by match to protein family HMM PF01609
YP_001027870.1	defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly
YP_001027872.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048
YP_001027874.1	in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme
YP_001027875.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_001027876.1	identified by match to protein family HMM PF00665
YP_001027877.1	identified by match to protein family HMM PF01527
YP_001027878.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001027879.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_001027880.1	Modulates Rho-dependent transcription termination
YP_001027881.1	binds directly to 23S ribosomal RNA
YP_001027882.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_001027883.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_001027884.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_001027885.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_001027886.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_001027887.1	identified by match to protein family HMM PF01610
YP_001027889.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389
YP_001027890.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_001027891.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_001027892.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001027893.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001027894.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_001027895.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_001027896.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_001027897.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_001027898.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_001027899.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_001027900.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_001027901.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_001027902.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_001027903.1	one of the stabilizing components for the large ribosomal subunit
YP_001027904.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_001027905.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_001027906.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_001027907.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_001027908.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_001027909.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_001027910.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_001027911.1	binds 5S rRNA along with protein L5 and L25
YP_001027912.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_001027913.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_001027914.1	late assembly protein
YP_001027915.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_001027916.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_001027917.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_001027918.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_001027919.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_001027920.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001027921.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_001027922.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_001027923.1	identified by match to protein family HMM PF03091
YP_001027924.1	identified by match to protein family HMM PF00085; match to protein family HMM PF02683
YP_001027925.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_001027926.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_001027927.1	identified by match to protein family HMM PF00034
YP_001027928.1	identified by match to protein family HMM PF05140
YP_001027929.1	identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144
YP_001027930.1	identified by match to protein family HMM PF01527
YP_001027931.1	identified by match to protein family HMM PF00665
YP_001027932.1	identified by match to protein family HMM PF03922
YP_001027935.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis
YP_001027936.1	identified by match to protein family HMM PF00258
YP_001027937.1	identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481
YP_001027938.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001027939.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_001027942.1	Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
YP_001027944.1	identified by match to protein family HMM PF01609
YP_001027945.1	identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263
YP_001027946.1	identified by match to protein family HMM PF01037
YP_001027947.1	identified by match to protein family HMM PF00583
YP_001027948.1	identified by match to protein family HMM PF00440
YP_001027949.1	identified by match to protein family HMM PF08874
YP_001027950.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160
YP_001027952.1	identified by match to protein family HMM PF05138; match to protein family HMM TIGR02158
YP_001027953.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation
YP_001027955.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA
YP_001027956.1	identified by match to protein family HMM PF00657
YP_001027957.1	identified by match to protein family HMM PF01527
YP_001027958.1	identified by match to protein family HMM PF00665
YP_001027959.1	identified by match to protein family HMM PF01609
YP_001027960.1	identified by match to protein family HMM PF08895
YP_001027962.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_001027963.1	identified by match to protein family HMM PF05036
YP_001027964.1	identified by match to protein family HMM PF01323
YP_001027965.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001027966.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001027968.1	identified by match to protein family HMM PF01047
YP_001027970.1	identified by match to protein family HMM PF00496
YP_001027971.1	identified by match to protein family HMM PF00005
YP_001027972.1	identified by match to protein family HMM PF00753
YP_001027973.1	catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol
YP_001027974.1	identified by match to protein family HMM PF00484
YP_001027975.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_001027976.1	identified by match to protein family HMM PF00106
YP_001027979.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_001027980.1	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine
YP_001027981.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_001027982.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433
YP_001027983.1	identified by match to protein family HMM PF03932
YP_001027985.1	identified by match to protein family HMM PF00245
YP_001027986.1	identified by match to protein family HMM PF00245
YP_001027990.1	identified by match to protein family HMM PF00665
YP_001027991.1	identified by match to protein family HMM PF01527
YP_001027993.1	identified by match to protein family HMM PF01758
YP_001027994.1	identified by match to protein family HMM PF00015
YP_001027995.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_001027996.1	identified by match to protein family HMM PF07221
YP_001027997.1	identified by match to protein family HMM PF00294
YP_001028000.1	identified by match to protein family HMM PF02636
YP_001028002.1	identified by match to protein family HMM TIGR00526
YP_001028003.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_001028005.1	identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173
YP_001028006.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_001028007.1	identified by match to protein family HMM PF01382
YP_001028010.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914
YP_001028011.1	identified by match to protein family HMM TIGR01730
YP_001028012.1	identified by match to protein family HMM PF02321
YP_001028014.1	identified by match to protein family HMM PF04536
YP_001028015.1	identified by match to protein family HMM PF04536
YP_001028016.1	identified by match to protein family HMM PF04011
YP_001028018.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_001028021.1	identified by match to protein family HMM PF00403
YP_001028025.1	catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis
YP_001028027.1	identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01424
YP_001028028.1	identified by match to protein family HMM PF01609
YP_001028031.1	identified by match to protein family HMM PF01566
YP_001028034.1	identified by match to protein family HMM PF04966
YP_001028035.1	identified by match to protein family HMM PF01527
YP_001028036.1	identified by match to protein family HMM PF00665
YP_001028037.1	identified by match to protein family HMM PF00535
YP_001028043.1	identified by match to protein family HMM PF00267
YP_001028045.1	identified by match to protein family HMM PF06912
YP_001028046.1	identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686
YP_001028048.1	identified by match to protein family HMM PF02417
YP_001028049.1	identified by match to protein family HMM PF02417
YP_001028050.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001028051.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_001028052.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.
YP_001028053.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_001028054.1	identified by match to protein family HMM PF07238; match to protein family HMM PF07317
YP_001028055.1	Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space
YP_001028056.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_001028057.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Burkholderia thailandensis has 2 copies of this and other flagella genes
YP_001028058.1	makes up the distal portion of the flagellar basal body rod
YP_001028059.1	FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod
YP_001028060.1	the hook connects flagellar basal body to the flagellar filament
YP_001028061.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production
YP_001028062.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_001028063.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod
YP_001028065.1	required for the assembly of the flagellar basal body P-ring
YP_001028066.1	identified by match to protein family HMM PF04316
YP_001028067.1	identified by match to protein family HMM PF05130
YP_001028069.1	catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases
YP_001028070.1	identified by match to protein family HMM PF02798
YP_001028071.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993
YP_001028072.1	identified by match to protein family HMM PF01464
YP_001028073.1	identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727
YP_001028074.1	identified by match to protein family HMM PF01047
YP_001028075.1	identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370
YP_001028076.1	identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724
YP_001028077.1	identified by match to protein family HMM PF03746
YP_001028078.1	identified by match to protein family HMM PF06149
YP_001028079.1	identified by match to protein family HMM PF06166
YP_001028080.1	identified by match to protein family HMM PF07446
YP_001028081.1	Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides
YP_001028082.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_001028083.1	identified by match to protein family HMM PF00528
YP_001028084.1	identified by match to protein family HMM PF00528
YP_001028085.1	identified by match to protein family HMM PF00496
YP_001028086.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001028087.1	identified by match to protein family HMM PF01355
YP_001028088.1	identified by match to protein family HMM PF01266
YP_001028089.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07728
YP_001028092.1	identified by match to protein family HMM PF03372
YP_001028093.1	identified by match to protein family HMM PF01810
YP_001028094.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00970
YP_001028097.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_001028098.1	identified by match to protein family HMM PF00324
YP_001028099.1	identified by match to protein family HMM PF02625
YP_001028100.1	identified by match to protein family HMM PF03929
YP_001028104.1	identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208
YP_001028105.1	identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205
YP_001028106.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_001028107.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001028108.1	binds to and inhibits the function of flagella specific ATPase FliI
YP_001028109.1	identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545
YP_001028110.1	identified by match to protein family HMM PF02050; match to protein family HMM TIGR02473
YP_001028111.1	identified by match to protein family HMM PF02120
YP_001028112.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_001028114.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_001028115.1	identified by match to protein family HMM PF00171
YP_001028117.1	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages
YP_001028120.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001028122.1	identified by match to protein family HMM PF00892
YP_001028124.1	identified by match to protein family HMM PF00248
YP_001028126.1	identified by match to protein family HMM PF05721
YP_001028129.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_001028130.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
YP_001028131.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_001028132.1	identified by match to protein family HMM PF04340
YP_001028133.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_001028135.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_001028136.1	identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420
YP_001028137.2	heat shock protein involved in degradation of misfolded proteins
YP_001028138.1	heat shock protein involved in degradation of misfolded proteins
YP_001028139.1	identified by match to protein family HMM PF00072; match to protein family HMM PF02954
YP_001028140.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001028143.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_001028144.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01993
YP_001028145.1	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
YP_001028146.1	Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine
YP_001028147.1	identified by match to protein family HMM PF07021; match to protein family HMM PF08241; match to protein family HMM TIGR02081
YP_001028148.1	identified by match to protein family HMM PF07690
YP_001028149.1	identified by match to protein family HMM PF01435
YP_001028150.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06719
YP_001028151.1	identified by match to protein family HMM PF01610
YP_001028152.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001028153.1	identified by match to protein family HMM PF01609
YP_001028155.1	identified by match to protein family HMM PF00534
YP_001028156.1	identified by match to protein family HMM PF02563
YP_001028157.1	identified by match to protein family HMM PF02397; match to protein family HMM TIGR03023; match to protein family HMM TIGR03025
YP_001028159.1	identified by match to protein family HMM PF00027
YP_001028160.1	Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides
YP_001028161.1	identified by match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001028163.1	identified by match to protein family HMM PF08893
YP_001028164.1	identified by match to protein family HMM PF00703
YP_001028166.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001028167.1	identified by match to protein family HMM PF01569
YP_001028168.1	identified by match to protein family HMM PF00534
YP_001028171.1	identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479
YP_001028172.1	identified by match to protein family HMM PF00534
YP_001028173.1	identified by match to protein family HMM PF01943
YP_001028175.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001028177.1	identified by match to protein family HMM PF00596
YP_001028178.1	identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702
YP_001028181.1	identified by match to protein family HMM PF00069
YP_001028182.1	identified by match to protein family HMM PF00498
YP_001028191.1	identified by match to protein family HMM PF01527
YP_001028192.1	identified by match to protein family HMM PF00665
YP_001028195.1	identified by match to protein family HMM PF01839; match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_001028196.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_001028197.1	identified by match to protein family HMM PF00665
YP_001028198.1	identified by match to protein family HMM PF01527
YP_001028199.1	negatively supercoils closed circular double-stranded DNA
YP_001028200.1	binds the polymerase to DNA and acts as a sliding clamp
YP_001028201.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_001028202.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_001028203.1	identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188
YP_001028204.1	identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278
YP_001028205.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_001028207.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_001028208.1	identified by match to protein family HMM PF00665
YP_001028209.1	identified by match to protein family HMM PF01527
YP_001028211.1	identified by match to protein family HMM PF07152
YP_001028212.1	identified by match to protein family HMM PF00903
YP_001028213.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589
YP_001028214.1	identified by match to protein family HMM PF00730; match to protein family HMM PF06029
YP_001028215.1	involved in the first step of glutathione biosynthesis
YP_001028216.1	identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_001028220.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001028221.1	identified by match to protein family HMM PF01547
YP_001028222.1	identified by match to protein family HMM PF00850
YP_001028223.1	identified by match to protein family HMM PF00795
YP_001028225.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540
YP_001028227.1	identified by match to protein family HMM PF00665
YP_001028228.1	identified by match to protein family HMM PF01527
YP_001028229.1	identified by match to protein family HMM PF01610
YP_001028230.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_001028231.1	identified by match to protein family HMM PF01734
YP_001028232.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001028233.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001028234.1	decatenates replicating daughter chromosomes
YP_001028235.1	identified by match to protein family HMM PF00085
YP_001028236.1	identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732
YP_001028237.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_001028238.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_001028240.1	identified by match to protein family HMM PF01810
YP_001028241.1	identified by match to protein family HMM PF01435
YP_001028242.1	identified by match to protein family HMM PF01189; match to protein family HMM TIGR00563
YP_001028244.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08448
YP_001028245.1	identified by match to protein family HMM PF00072
YP_001028246.1	identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364
YP_001028248.1	identified by match to protein family HMM PF01242
YP_001028250.1	identified by match to protein family HMM PF03328
YP_001028251.1	identified by match to protein family HMM PF08238
YP_001028252.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210
YP_001028253.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_001028254.1	identified by match to protein family HMM PF04093
YP_001028255.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_001028256.1	functions in MreBCD complex in some organisms
YP_001028257.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_001028258.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001028259.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001028260.1	identified by match to protein family HMM PF03976
YP_001028261.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_001028262.1	identified by match to protein family HMM PF01609
YP_001028263.1	identified by match to protein family HMM PF07452
YP_001028264.1	identified by match to protein family HMM PF07859
YP_001028266.1	identified by match to protein family HMM PF07690
YP_001028267.1	identified by match to protein family HMM PF01047
YP_001028268.1	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382
YP_001028270.1	identified by match to protein family HMM PF01380
YP_001028271.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07908; match to protein family HMM PF07969
YP_001028272.1	identified by match to protein family HMM PF01042
YP_001028273.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_001028274.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_001028277.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913
YP_001028278.1	identified by match to protein family HMM PF01230
YP_001028279.1	identified by match to protein family HMM PF06155
YP_001028280.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_001028281.1	identified by match to protein family HMM PF04280
YP_001028282.1	identified by match to protein family HMM PF06843
YP_001028283.1	an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions
YP_001028285.1	identified by match to protein family HMM PF05724; match to protein family HMM PF08242
YP_001028286.1	identified by match to protein family HMM TIGR02605
YP_001028287.1	identified by match to protein family HMM PF04367
YP_001028288.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001028289.1	converts dATP to dAMP and pyrophosphate
YP_001028290.1	identified by match to protein family HMM PF00614
YP_001028291.1	identified by match to protein family HMM PF00440
YP_001028292.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001028293.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_001028294.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_001028295.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001028296.1	identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129
YP_001028297.1	identified by match to protein family HMM TIGR02664
YP_001028298.1	identified by match to protein family HMM PF03061
YP_001028300.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001028301.1	identified by match to protein family HMM PF00483
YP_001028302.1	identified by match to protein family HMM PF01636
YP_001028303.1	identified by match to protein family HMM PF04453
YP_001028304.1	identified by match to protein family HMM PF00639; match to protein family HMM PF09312
YP_001028305.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_001028306.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_001028307.1	identified by match to protein family HMM PF00892
YP_001028308.1	identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068
YP_001028309.1	identified by match to protein family HMM PF01863
YP_001028310.1	identified by match to protein family HMM PF01553
YP_001028311.1	Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate
YP_001028312.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_001028313.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_001028314.1	Transfers the fatty acyl group on membrane lipoproteins
YP_001028315.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03471
YP_001028316.1	identified by match to protein family HMM PF04752
YP_001028317.2	contains unknown N-terminal domain/ metalloprotease C-terminal domain
YP_001028319.1	identified by match to protein family HMM PF02562
YP_001028320.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_001028321.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001028322.1	identified by match to protein family HMM PF07690
YP_001028323.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001028324.1	identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506
YP_001028325.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_001028326.1	identified by match to protein family HMM PF00892
YP_001028327.1	identified by match to protein family HMM PF02655
YP_001028328.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_001028329.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_001028331.1	identified by match to protein family HMM PF01042
YP_001028332.1	identified by match to protein family HMM PF00230
YP_001028333.1	Converts glycerol and ADP to glycerol-3-phosphate and ADP
YP_001028334.1	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane
YP_001028337.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_001028338.1	identified by match to protein family HMM PF01019
YP_001028341.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_001028342.1	identified by match to protein family HMM PF00034
YP_001028344.1	identified by match to protein family HMM PF05425
YP_001028345.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_001028346.1	identified by match to protein family HMM PF04828
YP_001028348.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409
YP_001028349.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF03707
YP_001028350.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01966
YP_001028352.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229
YP_001028353.1	identified by match to protein family HMM PF01527
YP_001028354.1	identified by match to protein family HMM PF00665
YP_001028355.1	identified by match to protein family HMM TIGR01352
YP_001028358.1	identified by match to protein family HMM PF04932
YP_001028359.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_001028360.1	identified by match to protein family HMM PF03741
YP_001028361.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_001028362.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_001028364.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_001028365.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001028366.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001028367.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521
YP_001028368.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001028371.1	identified by match to protein family HMM PF00665
YP_001028372.1	identified by match to protein family HMM PF01527
YP_001028374.1	identified by match to protein family HMM PF01435
YP_001028376.1	identified by match to protein family HMM PF00561
YP_001028378.1	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195
YP_001028380.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_001028381.1	identified by match to protein family HMM PF03591
YP_001028382.1	identified by match to protein family HMM PF05437
YP_001028384.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_001028386.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001028387.1	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis
YP_001028388.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_001028389.1	identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_001028390.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_001028391.1	identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057
YP_001028395.1	identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666
YP_001028396.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001028397.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001028398.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037
YP_001028400.1	identified by match to protein family HMM PF04248
YP_001028401.1	identified by match to protein family HMM PF06240
YP_001028402.1	identified by match to protein family HMM PF00440; match to protein family HMM PF08361
YP_001028404.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_001028405.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915
YP_001028406.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001028407.1	identified by match to protein family HMM PF01610
YP_001028409.1	identified by match to protein family HMM PF01527
YP_001028410.1	identified by match to protein family HMM PF00665
YP_001028412.1	identified by match to protein family HMM PF00370
YP_001028413.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_001028414.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02818
YP_001028415.1	identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821
YP_001028416.1	identified by match to protein family HMM PF00950
YP_001028417.1	identified by match to protein family HMM PF00005
YP_001028418.1	identified by match to protein family HMM PF01297
YP_001028419.1	identified by match to protein family HMM PF01475
YP_001028420.1	Converts D-sorbitol to L-sorbose
YP_001028421.1	identified by match to protein family HMM PF00294
YP_001028423.1	identified by match to protein family HMM PF01547
YP_001028424.1	identified by match to protein family HMM PF00528
YP_001028425.1	identified by match to protein family HMM PF00528
YP_001028426.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_001028427.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402
YP_001028429.1	identified by match to protein family HMM TIGR01409
YP_001028431.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001028432.1	identified by match to protein family HMM PF00144
YP_001028433.1	identified by match to protein family HMM PF07690
YP_001028434.1	identified by match to protein family HMM PF04198
YP_001028435.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312
YP_001028436.1	identified by match to protein family HMM PF01232; match to protein family HMM PF08125
YP_001028437.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001028438.1	catalyzes the formation of benzaldehyde from benzoylformate
YP_001028439.1	identified by match to protein family HMM PF00171
YP_001028440.1	identified by match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM PF08546; match to protein family HMM TIGR00745
YP_001028442.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001028443.1	identified by match to protein family HMM PF03301; match to protein family HMM TIGR03036
YP_001028444.1	identified by match to protein family HMM PF00266; match to protein family HMM TIGR01814
YP_001028445.1	identified by match to protein family HMM PF04199; match to protein family HMM TIGR03035
YP_001028446.1	identified by match to protein family HMM PF01037
YP_001028447.1	identified by match to protein family HMM PF01613
YP_001028449.1	identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401
YP_001028450.1	identified by match to protein family HMM PF01904
YP_001028451.1	identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001028452.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate
YP_001028453.1	identified by match to protein family HMM PF00899
YP_001028456.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_001028457.1	identified by match to protein family HMM PF00892
YP_001028458.1	identified by match to protein family HMM PF01520
YP_001028459.1	identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_001028460.1	identified by match to protein family HMM PF00037; match to protein family HMM PF08331; match to protein family HMM TIGR00276
YP_001028461.1	identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589
YP_001028462.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_001028463.1	identified by match to protein family HMM PF00501
YP_001028464.1	identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011
YP_001028465.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_001028466.1	nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_001028467.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_001028468.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_001028470.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_001028471.1	identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695
YP_001028473.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001028474.1	identified by match to protein family HMM PF01609
YP_001028476.1	identified by match to protein family HMM PF01527
YP_001028477.1	identified by match to protein family HMM PF00665
YP_001028479.1	identified by match to protein family HMM PF00561
YP_001028481.1	identified by match to protein family HMM PF00301
YP_001028483.1	identified by match to protein family HMM PF00005
YP_001028484.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001028485.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001028489.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001028490.1	identified by match to protein family HMM PF05232
YP_001028491.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001028493.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001028494.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_001028495.1	identified by match to protein family HMM PF00850
YP_001028497.1	identified by match to protein family HMM PF02417
YP_001028498.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001028499.1	identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_001028500.1	identified by match to protein family HMM PF01042
YP_001028501.1	identified by match to protein family HMM PF00665
YP_001028502.1	identified by match to protein family HMM PF01527
YP_001028503.1	identified by match to protein family HMM PF00953
YP_001028504.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01179
YP_001028505.1	identified by match to protein family HMM PF00534
YP_001028506.1	identified by match to protein family HMM PF00535
YP_001028508.1	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_001028509.1	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193
YP_001028511.1	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A
YP_001028512.1	identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101
YP_001028513.1	identified by match to protein family HMM PF01730
YP_001028514.1	involved in the assembly of the urease metallocenter; possible nickel donor
YP_001028515.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_001028516.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active
YP_001028517.1	UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter
YP_001028518.1	identified by match to protein family HMM PF01774
YP_001028519.1	identified by match to protein family HMM PF00005
YP_001028520.1	identified by match to protein family HMM PF00005
YP_001028521.1	identified by match to protein family HMM PF02653
YP_001028522.1	identified by match to protein family HMM PF02653
YP_001028523.1	identified by match to protein family HMM TIGR01409
YP_001028525.1	catalyze the conversion of beta amino acids to the corresponding beta keto acid with pyruvate as the amine acceptor
YP_001028526.1	identified by match to protein family HMM PF00581
YP_001028527.1	identified by match to protein family HMM PF01135; match to protein family HMM PF05175; match to protein family HMM PF08241
YP_001028529.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001028531.1	identified by match to protein family HMM PF03692
YP_001028533.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_001028534.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_001028535.1	identified by match to protein family HMM PF02146
YP_001028537.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001028538.1	identified by match to protein family HMM PF01609
YP_001028540.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_001028541.1	identified by match to protein family HMM PF02641
YP_001028542.1	identified by match to protein family HMM PF02325
YP_001028543.1	identified by match to protein family HMM PF03807
YP_001028546.1	catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine
YP_001028547.1	identified by match to protein family HMM PF01810
YP_001028548.1	identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148
YP_001028549.1	identified by match to protein family HMM PF01464
YP_001028551.1	identified by match to protein family HMM PF00155
YP_001028552.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_001028553.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_001028554.1	bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis
YP_001028556.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_001028557.1	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326
YP_001028558.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_001028562.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_001028565.1	catalyzes the formation of pyruvate from D-cysteine
YP_001028566.1	identified by match to protein family HMM PF00005
YP_001028567.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001028568.1	identified by match to protein family HMM PF00497
YP_001028569.1	glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate
YP_001028570.1	identified by match to protein family HMM TIGR01198
YP_001028571.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_001028572.1	identified by match to protein family HMM PF01547
YP_001028573.1	identified by match to protein family HMM PF00528
YP_001028574.1	identified by match to protein family HMM PF00528
YP_001028575.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402
YP_001028576.1	identified by match to protein family HMM PF03458
YP_001028577.1	identified by match to protein family HMM PF01713
YP_001028578.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_001028579.1	identified by match to protein family HMM PF01580
YP_001028580.1	participates with LolB in the incorporation of lipoprotein into the outer membrane
YP_001028581.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07728
YP_001028583.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001028586.1	identified by match to protein family HMM PF00583
YP_001028587.1	blocks the formation of polar Z-ring septums
YP_001028588.1	identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968
YP_001028589.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_001028591.1	identified by match to protein family HMM PF00654
YP_001028592.1	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193
YP_001028594.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001028596.1	identified by match to protein family HMM TIGR01352
YP_001028599.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001028600.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_001028601.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_001028602.1	identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255
YP_001028603.1	Essential for recycling GMP and indirectly, cGMP
YP_001028604.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_001028605.1	identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_001028606.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_001028607.1	identified by match to protein family HMM PF01610
YP_001028609.1	identified by match to protein family HMM PF00665
YP_001028610.1	identified by match to protein family HMM PF01527
YP_001028611.1	identified by match to protein family HMM TIGR02795
YP_001028612.1	identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802
YP_001028613.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_001028614.1	identified by match to protein family HMM PF06519; match to protein family HMM TIGR02794
YP_001028615.1	identified by match to protein family HMM PF02472; match to protein family HMM TIGR02801
YP_001028616.1	identified by match to protein family HMM PF01618; match to protein family HMM TIGR02796
YP_001028617.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; match to protein family HMM TIGR02799
YP_001028618.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659
YP_001028620.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_001028621.1	identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244
YP_001028622.1	identified by match to protein family HMM TIGR02532
YP_001028624.1	identified by match to protein family HMM TIGR02532
YP_001028625.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_001028628.1	identified by match to protein family HMM PF05957
YP_001028629.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001028631.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001028632.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001028633.1	identified by match to protein family HMM PF04828
YP_001028634.1	identified by match to protein family HMM PF00563
YP_001028636.1	identified by match to protein family HMM PF00753
YP_001028637.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF07992
YP_001028639.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001028640.1	An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine
YP_001028641.1	identified by match to protein family HMM PF01557; match to protein family HMM PF09298; match to protein family HMM TIGR01266
YP_001028643.1	identified by match to protein family HMM PF07690
YP_001028645.1	identified by match to protein family HMM PF07690
YP_001028646.1	identified by match to protein family HMM PF00881; match to protein family HMM TIGR02476
YP_001028647.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001028648.1	identified by match to protein family HMM PF03466
YP_001028649.1	identified by match to protein family HMM PF01527
YP_001028650.1	identified by match to protein family HMM PF00665
YP_001028652.1	identified by match to protein family HMM PF00266
YP_001028653.1	identified by match to protein family HMM PF00165
YP_001028654.1	identified by match to protein family HMM PF00892
YP_001028655.1	identified by match to protein family HMM PF07690
YP_001028657.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450; match to protein family HMM TIGR02963
YP_001028658.1	identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02965
YP_001028660.1	identified by match to protein family HMM PF01547
YP_001028663.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783
YP_001028664.1	identified by match to protein family HMM PF00005
YP_001028667.1	identified by match to protein family HMM PF01032
YP_001028668.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001028669.1	identified by match to protein family HMM PF01323
YP_001028671.1	identified by match to protein family HMM PF04972
YP_001028673.1	identified by match to protein family HMM PF00450
YP_001028674.1	identified by match to protein family HMM PF01925
YP_001028676.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001028677.1	identified by match to protein family HMM PF03009
YP_001028678.1	identified by match to protein family HMM PF01810
YP_001028679.1	identified by match to protein family HMM PF00583
YP_001028680.1	identified by match to protein family HMM PF01381
YP_001028681.1	identified by match to protein family HMM PF00753
YP_001028682.1	identified by match to protein family HMM PF01638
YP_001028686.1	identified by match to protein family HMM PF03922
YP_001028689.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001028690.1	identified by match to protein family HMM PF01638
YP_001028693.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_001028694.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_001028695.1	identified by match to protein family HMM PF08543
YP_001028696.1	identified by match to protein family HMM PF00301
YP_001028698.1	identified by match to protein family HMM PF02622
YP_001028699.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_001028700.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_001028701.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_001028702.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_001028703.1	identified by match to protein family HMM PF01553
YP_001028704.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_001028705.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181
YP_001028706.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207
YP_001028707.1	identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221
YP_001028708.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214
YP_001028709.1	identified by match to protein family HMM PF01061
YP_001028710.1	identified by match to protein family HMM PF00005
YP_001028711.1	identified by match to protein family HMM PF01757
YP_001028712.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001028714.1	identified by match to protein family HMM PF00535; match to protein family HMM PF08242
YP_001028715.1	identified by match to protein family HMM PF00535
YP_001028716.1	identified by match to protein family HMM PF00535
YP_001028717.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001028718.1	identified by match to protein family HMM PF00953
YP_001028719.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02629; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001028720.1	identified by match to protein family HMM PF00665
YP_001028721.1	identified by match to protein family HMM PF01527
YP_001028722.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001028728.1	identified by match to protein family HMM PF05981
YP_001028729.1	identified by match to protein family HMM PF00037
YP_001028731.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_001028732.1	identified by match to protein family HMM PF02589
YP_001028734.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826; match to protein family HMM PF03446
YP_001028735.1	identified by match to protein family HMM PF02646
YP_001028736.1	identified by match to protein family HMM PF00583
YP_001028738.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_001028739.1	in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis
YP_001028740.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_001028741.1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
YP_001028742.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_001028744.1	identified by match to protein family HMM PF00355
YP_001028745.1	identified by match to protein family HMM PF01343
YP_001028746.1	identified by match to protein family HMM PF00590
YP_001028747.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_001028748.1	identified by match to protein family HMM PF02620
YP_001028749.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_001028750.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_001028751.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_001028752.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_001028753.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001028754.1	carries the fatty acid chain in fatty acid biosynthesis
YP_001028755.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_001028757.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_001028758.1	identified by match to protein family HMM PF03872
YP_001028759.1	identified by match to protein family HMM PF03888
YP_001028760.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037
YP_001028761.1	identified by match to protein family HMM PF05768
YP_001028762.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_001028763.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_001028764.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_001028765.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_001028766.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_001028767.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_001028768.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_001028769.1	hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides
YP_001028770.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001028771.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_001028773.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_001028774.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_001028776.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001028777.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_001028779.1	identified by match to protein family HMM PF00583
YP_001028781.1	identified by match to protein family HMM PF04314
YP_001028782.1	identified by match to protein family HMM PF02630
YP_001028784.1	identified by match to protein family HMM PF02358; match to protein family HMM PF08282; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484
YP_001028785.1	identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400
YP_001028786.1	identified by match to protein family HMM PF00005
YP_001028788.1	identified by match to protein family HMM PF00534
YP_001028791.1	identified by match to protein family HMM PF01266
YP_001028793.1	identified by match to protein family HMM PF01094
YP_001028794.1	identified by match to protein family HMM PF00665
YP_001028795.1	identified by match to protein family HMM PF01527
YP_001028797.1	identified by match to protein family HMM PF04794
YP_001028798.1	identified by match to protein family HMM PF04055
YP_001028799.1	identified by match to protein family HMM PF00535
YP_001028801.1	identified by match to protein family HMM PF00296
YP_001028802.1	identified by match to protein family HMM PF00561
YP_001028803.1	identified by match to protein family HMM TIGR00687
YP_001028804.1	identified by match to protein family HMM PF04185; match to protein family HMM PF05506; match to protein family HMM TIGR01409
YP_001028805.1	identified by match to protein family HMM PF01527
YP_001028806.1	identified by match to protein family HMM PF00665
YP_001028807.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001028808.1	identified by match to protein family HMM PF00005
YP_001028809.1	identified by match to protein family HMM PF00165
YP_001028812.1	DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate
YP_001028813.1	identified by match to protein family HMM PF04958
YP_001028814.1	identified by match to protein family HMM PF04958; match to protein family HMM TIGR03244
YP_001028815.1	a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH
YP_001028816.1	catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation
YP_001028817.1	catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism
YP_001028818.1	identified by match to protein family HMM PF00043
YP_001028819.1	identified by match to protein family HMM PF00497
YP_001028821.1	identified by match to protein family HMM PF00487
YP_001028822.1	identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847
YP_001028824.1	identified by match to protein family HMM PF00115
YP_001028826.1	identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433
YP_001028828.1	identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481
YP_001028829.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_001028831.1	identified by match to protein family HMM PF01883
YP_001028832.1	identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994
YP_001028833.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212; match to protein family HMM TIGR01979
YP_001028834.1	identified by match to protein family HMM PF01458
YP_001028835.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978
YP_001028836.1	identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980
YP_001028837.1	identified by match to protein family HMM PF05940
YP_001028838.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001028839.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001028840.1	identified by match to protein family HMM PF00027
YP_001028842.1	identified by match to protein family HMM PF03060
YP_001028844.1	identified by match to protein family HMM PF01136
YP_001028845.1	identified by match to protein family HMM PF01136
YP_001028847.1	identified by match to protein family HMM PF08859
YP_001028848.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495
YP_001028850.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_001028851.1	identified by match to protein family HMM PF05940
YP_001028853.1	identified by match to protein family HMM PF01883
YP_001028856.1	identified by match to protein family HMM PF00487
YP_001028857.1	identified by match to protein family HMM PF00875; match to protein family HMM PF03441
YP_001028858.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_001028861.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472
YP_001028865.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_001028866.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018
YP_001028867.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_001028868.1	identified by match to protein family HMM PF05962
YP_001028869.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_001028870.1	catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate
YP_001028871.1	identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017
YP_001028875.1	identified by match to protein family HMM PF00117; match to protein family HMM PF07722
YP_001028876.1	identified by match to protein family HMM PF00120
YP_001028877.1	identified by match to protein family HMM PF01527
YP_001028878.1	identified by match to protein family HMM PF00665
YP_001028880.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001028881.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460
YP_001028882.1	identified by match to protein family HMM PF06073
YP_001028883.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_001028884.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_001028885.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR02034
YP_001028886.1	catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1
YP_001028887.1	identified by match to protein family HMM PF01903
YP_001028888.1	identified by match to protein family HMM PF03739
YP_001028889.1	identified by match to protein family HMM PF03739
YP_001028891.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_001028892.1	binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB
YP_001028894.1	identified by match to protein family HMM PF00034
YP_001028895.1	identified by match to protein family HMM PF01609
YP_001028896.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_001028897.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001028898.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_001028899.1	identified by match to protein family HMM PF04402
YP_001028900.1	identified by match to protein family HMM PF01878
YP_001028901.1	identified by match to protein family HMM PF05164
YP_001028903.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715
YP_001028904.1	identified by match to protein family HMM PF01032
YP_001028905.1	identified by match to protein family HMM PF00005
YP_001028906.1	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole
YP_001028907.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_001028908.1	identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162
YP_001028911.1	identified by match to protein family HMM PF01497
YP_001028912.1	cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase
YP_001028913.1	CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
YP_001028914.1	identified by match to protein family HMM PF02283
YP_001028915.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_001028916.1	identified by match to protein family HMM PF07681
YP_001028917.1	identified by match to protein family HMM PF01656
YP_001028918.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_001028919.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_001028920.1	identified by match to protein family HMM PF02616
YP_001028922.1	identified by match to protein family HMM PF01103; match to protein family HMM PF07244
YP_001028923.1	identified by match to protein family HMM PF04357
YP_001028925.1	identified by match to protein family HMM PF00891
YP_001028926.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_001028928.1	identified by match to protein family HMM PF00691; match to protein family HMM PF05433
YP_001028929.1	identified by match to protein family HMM PF01656
YP_001028930.1	identified by match to protein family HMM PF00080
YP_001028931.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_001028932.1	identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711
YP_001028934.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_001028935.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_001028936.1	identified by match to protein family HMM PF00577
YP_001028938.1	identified by match to protein family HMM PF05229
YP_001028939.1	identified by match to protein family HMM PF05229
YP_001028941.1	identified by match to protein family HMM PF01209; match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001028942.1	identified by match to protein family HMM PF01609
YP_001028943.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_001028944.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_001028945.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis
YP_001028946.1	identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM PF07721
YP_001028948.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001028949.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001028950.1	identified by match to protein family HMM PF00171
YP_001028951.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_001028952.1	identified by match to protein family HMM PF01541
YP_001028955.1	identified by match to protein family HMM PF04339
YP_001028956.1	NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_001028957.1	identified by match to protein family HMM PF00543
YP_001028959.1	identified by match to protein family HMM PF00005
YP_001028960.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001028961.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001028962.1	identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096
YP_001028964.1	identified by match to protein family HMM PF02678
YP_001028967.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001028968.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001028971.1	identified by match to protein family HMM PF00528
YP_001028972.1	identified by match to protein family HMM PF00005
YP_001028973.1	identified by match to protein family HMM PF00665
YP_001028974.1	identified by match to protein family HMM PF01527
YP_001028976.1	identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400
YP_001028980.1	identified by match to protein family HMM PF07690
YP_001028981.1	identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481
YP_001028988.1	serine protease inhibitor, inhibits trypsin and other proteases
YP_001028989.1	identified by match to protein family HMM PF00768
YP_001028991.1	identified by match to protein family HMM PF08816
YP_001028992.1	identified by match to protein family HMM PF01527
YP_001028993.1	identified by match to protein family HMM PF00665
YP_001028995.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001028996.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001028997.1	identified by match to protein family HMM PF02515
YP_001028999.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001029000.1	identified by match to protein family HMM PF04362
YP_001029001.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_001029002.1	identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967
YP_001029007.1	identified by match to protein family HMM PF00994
YP_001029009.1	identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653
YP_001029010.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001029011.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR01818
YP_001029012.1	identified by match to protein family HMM PF01609
YP_001029013.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_001029014.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_001029015.1	identified by match to protein family HMM PF00672; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730
YP_001029016.1	identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351
YP_001029017.1	identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684
YP_001029018.1	identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660
YP_001029019.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01580
YP_001029021.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886
YP_001029022.1	identified by match to protein family HMM PF07690
YP_001029024.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_001029025.1	identified by match to protein family HMM PF01432
YP_001029027.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_001029028.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281
YP_001029029.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_001029031.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_001029032.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01348
YP_001029033.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350
YP_001029034.1	identified by match to protein family HMM PF01609
YP_001029035.1	identified by match to protein family HMM PF00768
YP_001029036.1	identified by match to protein family HMM TIGR01841
YP_001029037.1	identified by match to protein family HMM PF01609
YP_001029038.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001029039.1	identified by match to protein family HMM PF02754
YP_001029040.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02589
YP_001029042.1	identified by match to protein family HMM PF01451
YP_001029043.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; match to protein family HMM TIGR02010
YP_001029044.1	catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis
YP_001029045.1	identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999
YP_001029046.1	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011
YP_001029047.1	J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins
YP_001029048.1	involved in the maturation of iron-sulfur cluster-containing proteins
YP_001029049.1	identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007
YP_001029050.1	identified by match to protein family HMM PF04384
YP_001029051.1	identified by match to protein family HMM PF05433
YP_001029052.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_001029053.1	identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020
YP_001029054.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644
YP_001029058.1	identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212
YP_001029059.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02211
YP_001029060.1	identified by match to protein family HMM PF01026
YP_001029061.1	identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361
YP_001029064.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_001029065.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_001029066.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_001029067.1	forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein
YP_001029069.1	identified by match to protein family HMM PF01430
YP_001029070.1	identified by match to protein family HMM PF00132
YP_001029071.1	identified by match to protein family HMM PF04305
YP_001029072.1	identified by match to protein family HMM PF00561
YP_001029073.1	identified by match to protein family HMM PF02811
YP_001029074.1	identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057
YP_001029075.1	identified by match to protein family HMM PF02163
YP_001029076.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001029078.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_001029080.1	identified by match to protein family HMM PF00753
YP_001029082.1	identified by match to protein family HMM PF08007
YP_001029086.1	This protein performs the mismatch recognition step during the DNA repair process
YP_001029090.1	identified by match to protein family HMM PF00459
YP_001029091.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050
YP_001029092.1	identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172
YP_001029093.1	catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine
YP_001029094.1	identified by match to protein family HMM PF00160
YP_001029095.1	identified by match to protein family HMM PF00160
YP_001029096.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001029097.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_001029098.1	identified by match to protein family HMM PF00730
YP_001029099.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_001029100.1	identified by match to protein family HMM PF01171; match to protein family HMM PF09179; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433
YP_001029102.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_001029106.1	identified by match to protein family HMM PF00657; match to protein family HMM PF03797; match to protein family HMM TIGR01414
YP_001029109.1	identified by match to protein family HMM PF00873
YP_001029110.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01409; match to protein family HMM TIGR01730
YP_001029112.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_001029113.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733
YP_001029114.1	identified by match to protein family HMM PF05977; match to protein family HMM PF07690
YP_001029116.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_001029117.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733
YP_001029119.1	identified by match to protein family HMM PF02668
YP_001029123.1	identified by match to protein family HMM PF00456
YP_001029124.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_001029126.1	identified by match to protein family HMM PF01757
YP_001029127.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_001029128.1	identified by match to protein family HMM PF00535
YP_001029129.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_001029130.1	identified by match to protein family HMM PF00288
YP_001029131.1	identified by match to protein family HMM PF00291
YP_001029132.1	identified by match to protein family HMM PF00206; match to protein family HMM PF02222; match to protein family HMM PF02655
YP_001029135.1	identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500
YP_001029136.1	identified by match to protein family HMM PF00440
YP_001029137.1	identified by match to protein family HMM PF00037
YP_001029138.1	identified by match to protein family HMM PF04055
YP_001029139.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00970
YP_001029141.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_001029143.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_001029144.1	identified by match to protein family HMM PF00496
YP_001029145.1	identified by match to protein family HMM PF00528
YP_001029146.1	identified by match to protein family HMM PF00528
YP_001029147.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352
YP_001029148.1	identified by match to protein family HMM PF00877
YP_001029149.1	identified by match to protein family HMM PF01734
YP_001029150.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_001029151.1	identified by match to protein family HMM PF00583
YP_001029153.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_001029154.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_001029155.1	identified by match to protein family HMM PF03674
YP_001029156.1	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle
YP_001029157.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493
YP_001029158.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001029159.1	identified by match to protein family HMM PF00582
YP_001029160.1	identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346
YP_001029161.1	identified by match to protein family HMM PF01609
YP_001029162.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_001029163.1	identified by match to protein family HMM PF00887
YP_001029164.1	identified by match to protein family HMM PF00814
YP_001029165.1	identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575
YP_001029166.1	identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758
YP_001029167.1	identified by match to protein family HMM PF08907
YP_001029168.1	identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097
YP_001029169.1	identified by match to protein family HMM PF07690
YP_001029170.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_001029171.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_001029173.1	identified by match to protein family HMM PF00005
YP_001029174.1	identified by match to protein family HMM PF00255
YP_001029175.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_001029176.1	involved in methylation of ribosomal protein L3
YP_001029177.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_001029178.1	identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617
YP_001029179.1	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_001029180.1	catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate
YP_001029181.1	identified by match to protein family HMM PF00892
YP_001029182.1	identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168
YP_001029185.1	identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575
YP_001029186.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_001029187.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_001029188.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_001029189.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_001029191.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_001029192.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_001029193.1	Catalyzes the phosphorylation of UMP to UDP
YP_001029194.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_001029195.1	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055
YP_001029196.1	identified by match to protein family HMM PF01148
YP_001029197.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_001029198.1	identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054
YP_001029200.1	identified by match to protein family HMM PF01103; match to protein family HMM PF07244
YP_001029201.1	identified by match to protein family HMM PF03938
YP_001029202.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_001029203.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_001029204.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_001029205.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_001029206.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_001029207.1	identified by match to protein family HMM PF00588
YP_001029208.1	identified by match to protein family HMM PF03618
YP_001029210.1	identified by match to protein family HMM PF00082; match to protein family HMM PF09286
YP_001029212.1	identified by match to protein family HMM PF05023
YP_001029213.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001029214.1	identified by match to protein family HMM PF01957
YP_001029215.1	identified by match to protein family HMM PF01145
YP_001029216.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_001029217.1	identified by match to protein family HMM PF03364
YP_001029218.1	identified by match to protein family HMM PF03658
YP_001029219.1	identified by match to protein family HMM PF00892
YP_001029222.1	identified by match to protein family HMM PF05988
YP_001029223.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_001029226.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_001029233.1	identified by match to protein family HMM PF00383
YP_001029234.1	catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine
YP_001029235.1	identified by match to protein family HMM PF01610
YP_001029236.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001029237.1	identified by match to protein family HMM PF02133
YP_001029238.1	identified by match to protein family HMM PF01177
YP_001029239.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR03212
YP_001029240.1	identified by match to protein family HMM TIGR03164
YP_001029241.2	catalyzes the formation of S-ureidoglycolate and urea from allantoate
YP_001029242.1	catalyzes the formation of glyoxylate from (S)-ureidoglycolate
YP_001029244.1	identified by match to protein family HMM PF01609
YP_001029246.1	homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_001029248.1	identified by match to protein family HMM PF04012
YP_001029250.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_001029252.1	identified by match to protein family HMM PF00291
YP_001029253.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine
YP_001029254.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580
YP_001029255.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_001029256.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_001029258.1	identified by match to protein family HMM PF02627
YP_001029259.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001029260.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001029261.1	part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation
YP_001029264.1	identified by match to protein family HMM PF08811
YP_001029265.1	identified by match to protein family HMM PF07394; match to protein family HMM TIGR01409
YP_001029266.1	identified by match to protein family HMM PF00494
YP_001029267.1	identified by match to protein family HMM PF01527
YP_001029268.1	identified by match to protein family HMM PF00665
YP_001029271.1	identified by match to protein family HMM PF00850
YP_001029272.1	identified by match to protein family HMM PF07690
YP_001029273.1	identified by match to protein family HMM PF00267
YP_001029274.1	identified by match to protein family HMM PF00196; match to protein family HMM PF08281
YP_001029275.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_001029277.1	identified by match to protein family HMM PF01047
YP_001029278.1	identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_001029281.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_001029282.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_001029283.1	binds and unfolds substrates as part of the ClpXP protease
YP_001029284.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763
YP_001029291.1	identified by match to protein family HMM PF00639
YP_001029293.1	identified by match to protein family HMM PF00657
YP_001029294.1	identified by match to protein family HMM PF00005
YP_001029295.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_001029297.1	identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197
YP_001029298.1	identified by match to protein family HMM PF01266
YP_001029300.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_001029301.1	identified by match to protein family HMM PF00583
YP_001029302.1	identified by match to protein family HMM PF00639
YP_001029303.1	identified by match to protein family HMM PF01722
YP_001029304.1	Involved in cell division; probably involved in intracellular septation
YP_001029305.1	identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357
YP_001029306.1	identified by match to protein family HMM PF02696
YP_001029307.1	activates fatty acids by binding to coenzyme A
YP_001029308.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_001029309.1	identified by match to protein family HMM PF00857
YP_001029310.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_001029312.1	identified by match to protein family HMM PF07876
YP_001029313.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_001029314.1	identified by match to protein family HMM PF00107
YP_001029315.1	identified by match to protein family HMM PF07859
YP_001029316.1	identified by match to protein family HMM PF00583
YP_001029317.1	identified by match to protein family HMM PF05742
YP_001029319.1	identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247
YP_001029320.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_001029321.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_001029322.1	identified by match to protein family HMM PF00583
YP_001029323.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_001029324.1	identified by match to protein family HMM PF00023
YP_001029326.1	identified by match to protein family HMM PF00924
YP_001029328.1	identified by match to protein family HMM PF00534
YP_001029332.1	identified by match to protein family HMM PF07769
YP_001029334.1	identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520
YP_001029336.1	identified by match to protein family HMM PF01527
YP_001029337.1	identified by match to protein family HMM PF00665
YP_001029339.1	identified by match to protein family HMM PF00665
YP_001029340.1	identified by match to protein family HMM PF00116
YP_001029341.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409
YP_001029342.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription