-- dump date 20140619_014738 -- class Genbank::CDS -- table cds_note -- id note YP_331424.1 identified by match to protein family HMM PF00657 YP_331425.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA YP_331426.1 identified by match to protein family HMM PF06243; match to protein family HMM TIGR02157 YP_331427.1 identified by match to protein family HMM PF05138; match to protein family HMM TIGR02158 YP_331428.1 identified by match to protein family HMM PF01883; match to protein family HMM TIGR02159 YP_331429.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160 YP_331431.1 identified by match to protein family HMM PF00440 YP_331432.1 identified by match to protein family HMM PF00583 YP_331433.1 identified by match to protein family HMM PF01037 YP_331434.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263 YP_331436.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_331437.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_331438.2 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_331439.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_331440.1 identified by match to protein family HMM PF00258 YP_331441.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_331444.1 identified by match to protein family HMM PF03922 YP_331445.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_331446.1 identified by match to protein family HMM PF07690 YP_331447.1 identified by match to protein family HMM PF01810 YP_331448.1 identified by match to protein family HMM PF02826; match to protein family HMM PF03446; match to protein family HMM PF03807 YP_331449.1 identified by match to protein family HMM PF01927 YP_331454.1 identified by match to protein family HMM PF00324 YP_331455.1 identified by match to protein family HMM PF00034 YP_331456.1 identified by match to protein family HMM PF04972 YP_331457.1 identified by match to protein family HMM TIGR00441 YP_331458.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_331459.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_331460.1 identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413 YP_331461.1 identified by match to protein family HMM PF00753 YP_331463.1 identified by match to protein family HMM PF01037 YP_331464.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_331465.1 identified by match to protein family HMM PF00816 YP_331466.1 identified by match to protein family HMM PF01243 YP_331467.1 identified by match to protein family HMM PF07690 YP_331468.1 identified by match to protein family HMM PF01094 YP_331469.1 identified by match to protein family HMM PF03060 YP_331470.1 identified by match to protein family HMM PF01738 YP_331471.1 identified by match to protein family HMM PF01425 YP_331472.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_331473.1 identified by match to protein family HMM PF04020 YP_331474.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_331475.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes YP_331478.1 positive regulator of class III flagellar genes YP_331479.1 membrane protein involved in the flagellar export apparatus YP_331480.2 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_331481.1 identified by match to protein family HMM PF06983 YP_331486.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation YP_331487.1 identified by match to protein family HMM PF00072 YP_331488.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_331489.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_331490.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_331491.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_331493.1 identified by match to protein family HMM PF01584 YP_331494.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 YP_331495.1 identified by match to protein family HMM PF00072 YP_331496.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_331497.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_331498.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems YP_331499.1 with FlhC isinvolved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems YP_331500.1 identified by match to protein family HMM PF00534 YP_331501.1 identified by match to protein family HMM PF00816 YP_331502.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure YP_331503.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_331504.1 identified by match to protein family HMM PF01869 YP_331505.1 identified by match to protein family HMM PF03352 YP_331506.2 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_331507.2 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus YP_331509.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196 YP_331511.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_331512.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_331517.1 identified by match to protein family HMM PF00106 YP_331518.1 identified by match to protein family HMM PF00132 YP_331519.1 identified by match to protein family HMM PF00355 YP_331521.1 identified by match to protein family HMM PF01810 YP_331522.1 identified by match to protein family HMM PF04185; match to protein family HMM TIGR01409 YP_331524.1 identified by match to protein family HMM PF05643 YP_331526.1 identified by match to protein family HMM PF03783 YP_331528.1 identified by match to protein family HMM PF00561 YP_331529.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_331530.1 identified by match to protein family HMM PF01565; match to protein family HMM PF08031 YP_331531.1 identified by match to protein family HMM PF03067 YP_331534.1 identified by match to protein family HMM PF01381 YP_331535.1 identified by match to protein family HMM PF05973 YP_331536.1 identified by match to protein family HMM PF00034 YP_331538.1 identified by match to protein family HMM PF00580 YP_331540.1 identified by match to protein family HMM PF00657 YP_331541.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_331543.2 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_331544.1 identified by match to protein family HMM PF00364; match to protein family HMM PF01597; match to protein family HMM TIGR00527 YP_331545.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_331547.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_331549.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit YP_331551.1 identified by match to protein family HMM PF00165 YP_331554.1 identified by match to protein family HMM PF00171 YP_331556.1 catalyzes the formation of acetaldehyde from ethanolamine YP_331557.1 identified by match to protein family HMM PF06751 YP_331559.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00908 YP_331560.1 identified by match to protein family HMM PF01757 YP_331562.1 identified by match to protein family HMM PF05552 YP_331566.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_331567.1 identified by match to protein family HMM PF00376; match to protein family HMM TIGR02047 YP_331568.1 identified by match to protein family HMM PF03551 YP_331569.1 identified by match to protein family HMM PF02913 YP_331572.1 identified by match to protein family HMM PF00497 YP_331573.1 catalyzes the transfer of an amino moiety YP_331575.1 identified by match to protein family HMM PF00440 YP_331576.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_331579.1 identified by match to protein family HMM PF00501 YP_331581.1 identified by match to protein family HMM PF01094 YP_331582.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein YP_331585.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_331586.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_331588.1 identified by match to protein family HMM PF00497 YP_331589.1 identified by match to protein family HMM PF02629 YP_331592.1 activates fatty acids by binding to coenzyme A YP_331593.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_331595.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_331596.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_331597.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_331598.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_331599.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_331600.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_331601.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_331603.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_331604.1 identified by match to protein family HMM PF01656 YP_331605.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_331606.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_331607.1 identified by match to protein family HMM PF00005 YP_331608.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02653 YP_331609.1 identified by match to protein family HMM PF02653 YP_331610.1 identified by match to protein family HMM PF01094 YP_331612.1 identified by match to protein family HMM PF02653 YP_331613.1 identified by match to protein family HMM PF02653 YP_331614.1 identified by match to protein family HMM PF01094 YP_331615.1 identified by match to protein family HMM PF00005 YP_331616.1 identified by match to protein family HMM PF00005 YP_331617.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_331618.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_331619.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_331620.1 identified by match to protein family HMM PF01928 YP_331621.1 identified by match to protein family HMM PF01037 YP_331622.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_331623.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_331624.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_331625.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_331626.1 identified by match to protein family HMM PF00856 YP_331627.1 identified by match to protein family HMM PF00724 YP_331628.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_331629.1 identified by match to protein family HMM PF01047 YP_331630.2 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity YP_331631.1 identified by match to protein family HMM PF00999 YP_331633.2 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules YP_331634.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_331635.1 identified by match to protein family HMM PF01464 YP_331636.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 YP_331637.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533 YP_331638.1 identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120 YP_331640.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532 YP_331641.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532 YP_331642.1 identified by match to protein family HMM PF02501 YP_331644.1 identified by match to protein family HMM PF03934 YP_331645.1 identified by match to protein family HMM PF05134; match to protein family HMM TIGR01709 YP_331646.1 identified by match to protein family HMM PF04612 YP_331648.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_331650.1 identified by match to protein family HMM PF01047 YP_331651.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_331652.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_331653.1 identified by match to protein family HMM PF03788 YP_331654.1 identified by match to protein family HMM PF04172 YP_331655.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_331656.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_331657.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480 YP_331658.1 identified by match to protein family HMM PF04347 YP_331659.2 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_331660.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus YP_331662.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01400 YP_331664.1 identified by match to protein family HMM PF00376 YP_331668.1 identified by match to protein family HMM PF00005 YP_331669.1 identified by match to protein family HMM PF00528 YP_331670.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_331671.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_331675.1 identified by match to protein family HMM PF01555 YP_331676.1 identified by match to protein family HMM PF04851 YP_331679.1 identified by match to protein family HMM PF00165 YP_331680.1 identified by match to protein family HMM PF00005 YP_331682.1 identified by match to protein family HMM PF00005 YP_331683.1 identified by match to protein family HMM PF02653 YP_331684.1 identified by match to protein family HMM PF02653 YP_331688.1 identified by match to protein family HMM PF00171 YP_331692.1 identified by match to protein family HMM PF00106 YP_331694.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_331695.1 identified by match to protein family HMM PF03551 YP_331698.1 identified by match to protein family HMM PF00487 YP_331700.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_331701.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_331702.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_331703.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_331704.1 identified by match to protein family HMM PF02515 YP_331710.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545 YP_331711.1 identified by match to protein family HMM PF00199 YP_331712.1 identified by match to protein family HMM PF01292 YP_331713.1 identified by match to protein family HMM PF01527 YP_331714.1 identified by match to protein family HMM PF00665 YP_331715.1 negatively supercoils closed circular double-stranded DNA YP_331716.1 binds the polymerase to DNA and acts as a sliding clamp YP_331717.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_331718.1 identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188 YP_331719.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_331720.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_331723.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_331724.1 identified by match to protein family HMM PF00589 YP_331728.1 identified by match to protein family HMM PF00665 YP_331729.1 identified by match to protein family HMM PF01527 YP_331733.1 identified by match to protein family HMM PF00583 YP_331736.1 identified by match to protein family HMM PF07152 YP_331737.1 identified by match to protein family HMM PF00903 YP_331738.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589 YP_331739.1 identified by match to protein family HMM PF00730; match to protein family HMM PF06029 YP_331740.1 involved in the first step of glutathione biosynthesis YP_331741.1 identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545 YP_331745.1 identified by match to protein family HMM PF03466 YP_331747.1 identified by match to protein family HMM PF01547 YP_331748.1 identified by match to protein family HMM PF00850 YP_331750.1 identified by match to protein family HMM PF00795 YP_331751.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540 YP_331754.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_331755.1 identified by match to protein family HMM PF01734 YP_331756.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_331757.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_331758.2 decatenates replicating daughter chromosomes YP_331760.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_331761.2 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_331762.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_331763.1 identified by match to protein family HMM PF01810 YP_331764.1 identified by match to protein family HMM PF01435 YP_331765.1 identified by match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_331767.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_331768.1 identified by match to protein family HMM PF00072; match to protein family HMM TIGR01199 YP_331770.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_331772.1 identified by match to protein family HMM PF01242 YP_331773.1 identified by match to protein family HMM PF03328 YP_331776.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_331777.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_331778.1 identified by match to protein family HMM PF04093 YP_331779.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_331780.1 functions in MreBCD complex in some organisms YP_331781.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_331782.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_331783.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_331784.1 identified by match to protein family HMM PF03976 YP_331785.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_331786.1 identified by match to protein family HMM PF00107 YP_331787.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_331788.1 identified by match to protein family HMM PF01435 YP_331789.1 identified by match to protein family HMM PF07690 YP_331790.1 identified by match to protein family HMM PF07021; match to protein family HMM TIGR02081 YP_331791.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_331792.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_331794.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_331797.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_331798.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_331799.1 heat shock protein involved in degradation of misfolded proteins YP_331800.2 heat shock protein involved in degradation of misfolded proteins YP_331801.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420 YP_331803.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_331806.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_331807.1 identified by match to protein family HMM PF04340 YP_331808.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_331809.1 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_331811.1 identified by match to protein family HMM PF05721 YP_331814.1 identified by match to protein family HMM PF00248 YP_331816.1 identified by match to protein family HMM PF00892 YP_331817.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_331819.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_331823.1 identified by match to protein family HMM PF00171 YP_331824.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_331825.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_331826.1 identified by match to protein family HMM PF02120 YP_331827.1 identified by match to protein family HMM PF02050; match to protein family HMM TIGR02473 YP_331828.1 identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545 YP_331829.1 binds to and inhibits the function of flagella specific ATPase FliI YP_331830.1 One of three proteins involved in switching the direction of the flagellar rotation YP_331831.2 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_331832.1 identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205 YP_331833.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_331836.1 identified by match to protein family HMM PF03929 YP_331838.1 identified by match to protein family HMM PF00324 YP_331839.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_331840.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_331841.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970 YP_331842.1 identified by match to protein family HMM PF01810 YP_331847.1 identified by match to protein family HMM PF00004 YP_331848.1 identified by match to protein family HMM PF01266 YP_331849.1 HiPIP; identified by match to protein family HMM PF01355 YP_331850.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_331851.1 identified by match to protein family HMM PF00496 YP_331852.1 identified by match to protein family HMM PF00528 YP_331853.1 identified by match to protein family HMM PF00528 YP_331854.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_331856.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides YP_331857.1 identified by match to protein family HMM PF07446 YP_331859.1 identified by match to protein family HMM PF06166 YP_331860.1 identified by match to protein family HMM PF06149 YP_331861.1 identified by match to protein family HMM PF03746 YP_331862.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_331863.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370 YP_331866.1 identified by match to protein family HMM PF01812 YP_331867.1 identified by match to protein family HMM PF01464 YP_331869.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_331870.1 identified by match to protein family HMM PF02798 YP_331871.2 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases YP_331873.1 identified by match to protein family HMM PF05130 YP_331874.1 identified by match to protein family HMM PF04316 YP_331875.2 required for the assembly of the flagellar basal body P-ring YP_331876.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_331878.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_331877.2 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production YP_331879.1 the hook connects flagellar basal body to the flagellar filament YP_331880.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod YP_331881.1 makes up the distal portion of the flagellar basal body rod YP_331882.2 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Burkholderia thailandensis has 2 copies of this and other flagella genes YP_331884.2 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_331885.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space YP_331886.1 identified by match to protein family HMM PF07317 YP_331887.1 identified by match to protein family HMM PF07595 YP_331888.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_331889.2 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes. YP_331890.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_331891.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_331893.1 identified by match to protein family HMM PF02417 YP_331894.1 identified by match to protein family HMM PF02417 YP_331896.1 identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686 YP_331897.1 identified by match to protein family HMM PF06912 YP_331898.1 identified by match to protein family HMM PF00267 YP_331902.1 identified by match to protein family HMM PF00535 YP_331903.1 identified by match to protein family HMM PF04966 YP_331907.1 identified by match to protein family HMM PF01566 YP_331910.1 identified by match to protein family HMM PF01610 YP_331913.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01424 YP_331915.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_331918.1 identified by match to protein family HMM PF00403 YP_331920.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_331922.1 identified by match to protein family HMM PF04011 YP_331923.1 identified by match to protein family HMM PF04536 YP_331924.1 identified by match to protein family HMM PF04536 YP_331926.1 identified by match to protein family HMM PF02321 YP_331927.1 identified by match to protein family HMM TIGR01730 YP_331928.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_331930.1 identified by match to protein family HMM PF01382 YP_331931.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_331932.1 identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173 YP_331933.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_331934.1 identified by match to protein family HMM TIGR00526 YP_331937.1 identified by match to protein family HMM PF02636 YP_331940.1 identified by match to protein family HMM PF00294 YP_331941.1 identified by match to protein family HMM PF07221 YP_331942.1 identified by match to protein family HMM PF00532 YP_331944.1 identified by match to protein family HMM PF00015 YP_331946.1 identified by match to protein family HMM PF01758 YP_331948.1 identified by match to protein family HMM PF00267 YP_331949.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_331950.1 identified by match to protein family HMM PF00478; match to protein family HMM PF03060 YP_331951.1 identified by match to protein family HMM PF00561 YP_331952.1 identified by match to protein family HMM PF00892 YP_331953.1 identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199 YP_331955.1 identified by match to protein family HMM PF06945 YP_331956.1 prolyl-tRNA synthetases associated domain; identified by match to protein family HMM PF04073 YP_331957.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA YP_331958.1 identified by match to protein family HMM PF02826; match to protein family HMM PF03446 YP_331959.1 identified by match to protein family HMM PF00903 YP_331960.1 identified by match to protein family HMM PF06821 YP_331961.1 identified by match to protein family HMM PF00293 YP_331963.1 identified by match to protein family HMM PF04185; match to protein family HMM PF05506 YP_331965.1 identified by match to protein family HMM PF01037 YP_331966.1 identified by match to protein family HMM PF03591 YP_331967.1 identified by match to protein family HMM PF00561 YP_331968.1 identified by match to protein family HMM PF06063 YP_331969.1 identified by match to protein family HMM PF02630 YP_331970.1 identified by match to protein family HMM PF01344; match to protein family HMM PF07646 YP_331971.1 identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 YP_331973.1 identified by match to protein family HMM PF00158 YP_331974.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971 YP_331975.1 identified by match to protein family HMM PF00450 YP_331976.1 identified by match to protein family HMM PF01007; match to protein family HMM PF07885 YP_331977.1 catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_331978.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831 YP_331979.1 identified by match to protein family HMM PF00563 YP_331981.1 identified by match to protein family HMM PF00245 YP_331982.1 identified by match to protein family HMM PF00245 YP_331983.1 identified by match to protein family HMM PF03932 YP_331985.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_331986.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_331987.2 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_331988.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_331992.1 identified by match to protein family HMM PF00106 YP_331993.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_331994.1 identified by match to protein family HMM PF00484 YP_331995.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol YP_331996.1 identified by match to protein family HMM PF00753 YP_331997.1 identified by match to protein family HMM PF00005 YP_331998.1 identified by match to protein family HMM PF00496 YP_332000.1 identified by match to protein family HMM PF01047 YP_332002.1 identified by match to protein family HMM PF00106 YP_332003.1 identified by match to protein family HMM PF00106 YP_332004.1 identified by match to protein family HMM PF01323 YP_332005.1 identified by match to protein family HMM PF05036 YP_332006.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_332008.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082 YP_332009.1 identified by match to protein family HMM PF02574 YP_332014.1 identified by match to protein family HMM PF01614 YP_332016.1 identified by match to protein family HMM PF01557 YP_332017.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_332019.1 identified by match to protein family HMM PF01734 YP_332021.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199 YP_332023.2 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_332025.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_332026.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_332027.1 identified by match to protein family HMM PF00005 YP_332028.1 identified by match to protein family HMM PF02470 YP_332030.1 identified by match to protein family HMM PF04892 YP_332034.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_332035.1 identified by match to protein family HMM PF01063 YP_332036.1 identified by match to protein family HMM PF04359 YP_332037.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_332040.2 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_332042.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_332044.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066 YP_332046.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199 YP_332048.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; match to protein family HMM PF03446 YP_332049.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_332050.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_332051.1 identified by match to protein family HMM PF02515 YP_332053.1 identified by match to protein family HMM PF04341 YP_332052.2 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake YP_332054.1 involved in the transport of C4-dicarboxylates across the membrane YP_332055.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_332056.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_332059.1 identified by match to protein family HMM PF00975 YP_332061.1 identified by match to protein family HMM PF00583 YP_332062.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368 YP_332065.1 identified by match to protein family HMM PF04380 YP_332066.1 identified by match to protein family HMM PF00543 YP_332067.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_332068.1 identified by match to protein family HMM TIGR02049 YP_332069.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_332070.1 identified by match to protein family HMM PF03610 YP_332071.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_332073.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_332074.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase YP_332075.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_332076.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_332077.1 identified by match to protein family HMM PF00581 YP_332078.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181 YP_332079.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_332080.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_332081.1 identified by match to protein family HMM PF01661 YP_332082.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_332086.1 identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF00691; match to protein family HMM PF02790 YP_332087.1 identified by match to protein family HMM PF00115 YP_332089.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_332091.1 identified by match to protein family HMM PF00510 YP_332095.1 identified by match to protein family HMM PF02628 YP_332096.1 converts protoheme IX and farnesyl diphosphate to heme O YP_332097.1 identified by match to protein family HMM PF02630 YP_332098.1 identified by match to protein family HMM PF03795 YP_332099.1 identified by match to protein family HMM PF00015 YP_332100.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_332101.1 identified by match to protein family HMM PF04392 YP_332103.1 identified by match to protein family HMM PF02653 YP_332104.1 identified by match to protein family HMM PF00005 YP_332106.2 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase. YP_332108.1 identified by match to protein family HMM PF07690 YP_332109.1 identified by match to protein family HMM PF00487 YP_332111.1 identified by match to protein family HMM PF00202 YP_332113.1 identified by match to protein family HMM PF01061 YP_332115.1 identified by match to protein family HMM PF00005 YP_332117.1 identified by match to protein family HMM PF01209 YP_332119.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_332121.1 identified by match to protein family HMM PF00501 YP_332123.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_332132.1 identified by match to protein family HMM PF00501 YP_332133.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_332134.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_332135.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_332136.1 identified by match to protein family HMM PF01380 YP_332137.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR00830; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417 YP_332138.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998 YP_332140.1 identified by match to protein family HMM PF00728; match to protein family HMM PF03173 YP_332141.1 identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106 YP_332142.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_332143.1 identified by match to protein family HMM PF01654 YP_332145.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_332147.1 identified by match to protein family HMM TIGR02246 YP_332148.1 identified by match to protein family HMM PF00682 YP_332150.1 identified by match to protein family HMM PF00583 YP_332152.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885 YP_332153.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879 YP_332154.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378 YP_332156.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374 YP_332158.1 identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262 YP_332160.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_332161.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_332162.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_332163.1 identified by match to protein family HMM PF00037 YP_332164.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_332165.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_332166.2 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_332167.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_332168.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_332169.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein YP_332170.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07721 YP_332171.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_332172.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730 YP_332174.1 identified by match to protein family HMM PF03668 YP_332175.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_332176.1 identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419 YP_332177.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_332178.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_332179.1 identified by match to protein family HMM PF00005 YP_332180.1 identified by match to protein family HMM PF03968 YP_332181.1 identified by match to protein family HMM PF06835 YP_332182.1 identified by match to protein family HMM TIGR01670 YP_332183.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_332184.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254 YP_332185.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_332188.1 identified by match to protein family HMM PF01810 YP_332189.1 identified by match to protein family HMM PF00293 YP_332190.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_332192.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_332193.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_332194.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_332195.1 identified by match to protein family HMM PF01527 YP_332196.1 identified by match to protein family HMM PF00665 YP_332198.1 identified by match to protein family HMM PF01527 YP_332199.1 identified by match to protein family HMM PF00665 YP_332200.1 identified by match to protein family HMM PF01738 YP_332204.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_332205.1 identified by match to protein family HMM PF01839; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_332213.1 identified by match to protein family HMM PF00498 YP_332214.1 identified by match to protein family HMM PF00069 YP_332215.1 identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702 YP_332216.1 identified by match to protein family HMM PF00596 YP_332218.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_332219.1 identified by match to protein family HMM PF01943 YP_332220.1 identified by match to protein family HMM PF00534 YP_332221.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_332223.1 identified by match to protein family HMM PF00534 YP_332224.1 identified by match to protein family HMM PF01569 YP_332225.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_332228.1 identified by match to protein family HMM PF00703 YP_332231.1 identified by match to protein family HMM PF02771; match to protein family HMM PF08028 YP_332232.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides YP_332233.1 identified by match to protein family HMM PF00027 YP_332235.1 identified by match to protein family HMM PF02397 YP_332236.1 identified by match to protein family HMM PF02563 YP_332237.1 identified by match to protein family HMM PF00534 YP_332239.1 identified by match to protein family HMM PF07452 YP_332241.1 identified by match to protein family HMM PF07859 YP_332244.1 identified by match to protein family HMM PF07690 YP_332245.1 identified by match to protein family HMM PF01047 YP_332246.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_332248.1 identified by match to protein family HMM PF01380 YP_332250.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07908; match to protein family HMM PF07969 YP_332251.1 identified by match to protein family HMM PF01042 YP_332252.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_332253.2 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_332255.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913 YP_332256.1 identified by match to protein family HMM PF01230 YP_332257.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_332258.1 identified by match to protein family HMM PF04280 YP_332260.1 identified by match to protein family HMM PF06843 YP_332261.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions YP_332262.1 identified by match to protein family HMM PF05724 YP_332263.1 identified by match to protein family HMM TIGR02605 YP_332264.1 identified by match to protein family HMM PF04367 YP_332265.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_332266.1 converts dATP to dAMP and pyrophosphate YP_332267.1 identified by match to protein family HMM PF00614 YP_332270.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_332271.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_332272.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_332274.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_332276.1 identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129 YP_332279.1 identified by match to protein family HMM PF03061 YP_332280.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_332281.1 identified by match to protein family HMM PF00483 YP_332283.1 identified by match to protein family HMM PF01636 YP_332284.1 identified by match to protein family HMM PF04453 YP_332285.1 identified by match to protein family HMM PF00639 YP_332286.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_332287.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_332288.1 identified by match to protein family HMM PF00892 YP_332289.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068 YP_332290.1 identified by match to protein family HMM PF01863 YP_332292.1 identified by match to protein family HMM PF01553 YP_332293.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_332294.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_332295.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_332296.2 Transfers the fatty acyl group on membrane lipoproteins YP_332298.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471 YP_332299.1 identified by match to protein family HMM PF04752 YP_332300.2 contains unknown N-terminal domain/ metalloprotease C-terminal domain YP_332301.1 identified by match to protein family HMM PF02562 YP_332302.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_332304.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_332305.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_332306.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_332308.1 identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506 YP_332309.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_332311.1 identified by match to protein family HMM PF00892 YP_332313.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM PF01171; match to protein family HMM TIGR01536 YP_332315.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_332316.1 identified by match to protein family HMM PF00275 YP_332317.1 identified by match to protein family HMM PF01042 YP_332318.1 identified by match to protein family HMM PF00230 YP_332319.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_332320.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_332323.1 identified by match to protein family HMM PF00455 YP_332324.1 identified by match to protein family HMM PF01019 YP_332327.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_332328.1 identified by match to protein family HMM PF00034 YP_332329.1 identified by match to protein family HMM PF00034 YP_332330.1 identified by match to protein family HMM PF05425 YP_332331.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_332332.1 identified by match to protein family HMM PF04828 YP_332334.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409 YP_332335.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF03707 YP_332336.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966 YP_332340.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM TIGR00229 YP_332342.1 identified by match to protein family HMM PF01565 YP_332344.1 identified by match to protein family HMM PF03466 YP_332345.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_332347.1 identified by match to protein family HMM PF00005 YP_332348.1 identified by match to protein family HMM PF00528 YP_332352.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_332353.1 identified by match to protein family HMM PF00156 YP_332355.1 identified by match to protein family HMM PF00912 YP_332356.1 identified by match to protein family HMM PF00034 YP_332357.1 identified by match to protein family HMM PF00115 YP_332358.1 identified by match to protein family HMM PF00034; match to protein family HMM PF00116 YP_332359.1 catalyzes the formation of acetate from pyruvate YP_332360.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_332363.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_332364.1 identified by match to protein family HMM PF05947 YP_332366.1 identified by match to protein family HMM PF01804 YP_332367.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_332368.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_332370.1 identified by match to protein family HMM PF00072 YP_332373.1 identified by match to protein family HMM PF00665 YP_332374.1 identified by match to protein family HMM PF01527 YP_332380.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_332381.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_332382.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_332384.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_332385.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_332388.1 catalyzes the interconversion of succinyl-CoA and succinate YP_332389.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_332390.1 identified by match to protein family HMM PF03741 YP_332391.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_332392.1 identified by match to protein family HMM PF04932 YP_332395.1 identified by match to protein family HMM TIGR01352 YP_332396.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_332397.1 identified by match to protein family HMM PF01435 YP_332399.1 identified by match to protein family HMM PF00561 YP_332402.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195 YP_332404.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_332407.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_332408.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_332409.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_332411.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_332412.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_332413.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_332415.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_332421.1 identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666 YP_332422.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_332425.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_332427.1 identified by match to protein family HMM PF04248 YP_332428.1 identified by match to protein family HMM PF06240 YP_332429.1 identified by match to protein family HMM PF00440 YP_332430.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_332431.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_332432.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_332433.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_332434.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_332435.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_332437.1 identified by match to protein family HMM PF00107 YP_332438.1 identified by match to protein family HMM PF00756 YP_332439.1 identified by match to protein family HMM PF00950 YP_332440.1 identified by match to protein family HMM PF00005 YP_332441.1 identified by match to protein family HMM PF01297 YP_332442.1 identified by match to protein family HMM PF01475 YP_332443.1 Converts D-sorbitol to L-sorbose YP_332444.1 identified by match to protein family HMM PF00294 YP_332445.1 identified by match to protein family HMM PF08013 YP_332446.1 identified by match to protein family HMM PF01547 YP_332448.1 identified by match to protein family HMM PF00528 YP_332449.1 identified by match to protein family HMM PF00528 YP_332451.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_332452.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_332453.1 identified by match to protein family HMM TIGR01409 YP_332454.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_332455.1 identified by match to protein family HMM PF00144 YP_332456.1 identified by match to protein family HMM PF07690 YP_332457.1 identified by match to protein family HMM PF04198 YP_332458.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_332459.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125 YP_332460.2 catalyzes the formation of benzaldehyde from benzoylformate YP_332462.1 identified by match to protein family HMM PF00171 YP_332463.1 identified by match to protein family HMM PF02558; match to protein family HMM TIGR00745 YP_332464.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_332465.1 identified by match to protein family HMM PF03301 YP_332466.1 identified by match to protein family HMM TIGR01814 YP_332467.1 identified by match to protein family HMM PF04199 YP_332468.1 identified by match to protein family HMM PF01037 YP_332469.1 identified by match to protein family HMM PF01613 YP_332470.1 identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_332471.1 identified by match to protein family HMM PF01904 YP_332472.1 identified by match to protein family HMM PF02353 YP_332473.2 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_332474.1 identified by match to protein family HMM PF00899 YP_332475.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_332476.1 identified by match to protein family HMM PF01520 YP_332477.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_332478.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276 YP_332479.2 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_332480.1 identified by match to protein family HMM PF00501 YP_332481.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011 YP_332482.2 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_332483.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_332484.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_332485.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_332487.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_332488.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_332491.1 identified by match to protein family HMM PF00106 YP_332492.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_332493.2 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_332494.1 identified by match to protein family HMM PF03966 YP_332495.1 Transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_332496.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_332497.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_332500.1 identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937 YP_332501.1 identified by match to protein family HMM PF00027 YP_332503.1 identified by match to protein family HMM PF06127 YP_332504.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate YP_332506.1 identified by match to protein family HMM PF00563 YP_332507.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_332509.1 identified by match to protein family HMM PF00285 YP_332512.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_332513.1 identified by match to protein family HMM PF00248 YP_332517.2 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_332518.1 identified by match to protein family HMM PF02643 YP_332519.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093 YP_332521.1 Converts isocitrate to alpha ketoglutarate YP_332522.1 identified by match to protein family HMM PF07731; match to protein family HMM PF07732 YP_332524.1 identified by match to protein family HMM PF00313 YP_332525.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM TIGR02639 YP_332526.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_332528.1 identified by match to protein family HMM PF00324 YP_332530.1 identified by match to protein family HMM PF03988 YP_332531.1 catalyzes the formation of dUMP from dUTP YP_332532.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_332533.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_332534.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_332536.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_332538.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_332539.1 identified by match to protein family HMM PF01189 YP_332541.1 identified by match to protein family HMM PF00924 YP_332542.1 identified by match to protein family HMM PF00487 YP_332543.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_332544.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_332546.1 catalyzes the formation of oxaloacetate from L-aspartate YP_332548.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_332549.1 required for 70S ribosome assembly YP_332551.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_332552.1 identified by match to protein family HMM PF00254 YP_332553.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_332555.1 identified by match to protein family HMM PF02653 YP_332556.1 identified by match to protein family HMM PF02653 YP_332557.1 identified by match to protein family HMM PF00005 YP_332558.1 identified by match to protein family HMM PF00005 YP_332561.1 identified by match to protein family HMM PF00583 YP_332562.2 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_332563.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose YP_332564.1 identified by match to protein family HMM PF01370 YP_332565.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_332566.1 identified by match to protein family HMM PF04234 YP_332567.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_332569.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_332570.1 identified by match to protein family HMM PF00561 YP_332571.1 identified by match to protein family HMM PF03473 YP_332572.1 identified by match to protein family HMM PF00701 YP_332573.1 identified by match to protein family HMM PF00596 YP_332574.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_332576.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_332577.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_332578.1 identified by match to protein family HMM PF06073 YP_332579.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_332580.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_332581.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR02034 YP_332582.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1 YP_332583.1 identified by match to protein family HMM PF01903 YP_332584.1 identified by match to protein family HMM PF03739 YP_332585.1 identified by match to protein family HMM PF03739 YP_332587.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_332588.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_332590.1 identified by match to protein family HMM PF00034 YP_332591.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_332592.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_332593.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_332594.1 identified by match to protein family HMM PF04402 YP_332595.1 identified by match to protein family HMM PF04543 YP_332596.1 identified by match to protein family HMM PF05164 YP_332598.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_332600.1 identified by match to protein family HMM PF01032 YP_332601.1 identified by match to protein family HMM PF00005 YP_332602.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_332603.1 identified by match to protein family HMM PF00300 YP_332604.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_332607.1 identified by match to protein family HMM PF01497 YP_332608.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase YP_332609.2 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_332610.1 identified by match to protein family HMM PF02283 YP_332611.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_332612.1 identified by match to protein family HMM PF07681 YP_332613.1 identified by match to protein family HMM PF01656 YP_332614.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_332615.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_332616.1 identified by match to protein family HMM PF02616 YP_332617.1 identified by match to protein family HMM PF01103 YP_332618.1 identified by match to protein family HMM PF04357 YP_332621.1 identified by match to protein family HMM PF00891 YP_332622.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_332623.1 identified by match to protein family HMM PF00691; match to protein family HMM PF05433 YP_332624.1 identified by match to protein family HMM PF01656 YP_332625.1 identified by match to protein family HMM PF00080 YP_332626.2 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_332627.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711 YP_332629.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_332630.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_332631.1 identified by match to protein family HMM PF00577 YP_332634.1 identified by match to protein family HMM PF05229 YP_332635.1 identified by match to protein family HMM PF05229 YP_332638.1 identified by match to protein family HMM PF01209; match to protein family HMM PF05175 YP_332639.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_332640.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_332642.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis YP_332643.1 identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_332644.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_332645.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_332647.1 identified by match to protein family HMM PF00171 YP_332648.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_332649.1 identified by match to protein family HMM PF01541 YP_332652.1 identified by match to protein family HMM PF04339 YP_332653.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_332654.1 identified by match to protein family HMM PF00543 YP_332656.1 identified by match to protein family HMM PF00005 YP_332657.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_332658.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_332660.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096 YP_332661.1 identified by match to protein family HMM PF02678 YP_332663.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_332665.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_332667.1 identified by match to protein family HMM PF00528 YP_332669.1 identified by match to protein family HMM PF07673 YP_332670.1 identified by match to protein family HMM PF00005 YP_332674.1 identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400 YP_332678.1 identified by match to protein family HMM PF07690 YP_332680.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_332683.1 serine protease inhibitor, inhibits trypsin and other proteases YP_332685.1 identified by match to protein family HMM PF00768 YP_332688.1 identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901 YP_332689.1 identified by match to protein family HMM PF03865 YP_332691.1 identified by match to protein family HMM PF01548 YP_332695.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_332700.2 identified by match to protein family HMM PF02371 YP_332701.1 identified by match to protein family HMM PF00589 YP_332705.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_332706.1 identified by match to protein family HMM PF00561 YP_332708.1 identified by match to protein family HMM PF00005 YP_332710.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_332711.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_332713.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_332714.1 identified by match to protein family HMM PF05232 YP_332715.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_332717.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_332718.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_332719.1 identified by match to protein family HMM PF00850 YP_332721.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_332722.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_332723.1 identified by match to protein family HMM PF01042 YP_332724.1 identified by match to protein family HMM PF00155 YP_332725.1 identified by match to protein family HMM PF00892 YP_332727.1 identified by match to protein family HMM PF00155 YP_332728.1 molecular chaperone YP_332729.1 identified by match to protein family HMM PF04345 YP_332733.1 identified by match to protein family HMM PF00474 YP_332734.1 identified by match to protein family HMM PF00903; match to protein family HMM PF06983 YP_332736.2 Maintains the balance of metabolites in the pentose-phosphate pathway YP_332738.1 identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843 YP_332741.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07728 YP_332742.1 identified by match to protein family HMM PF00034 YP_332743.1 identified by match to protein family HMM PF00034 YP_332745.1 identified by match to protein family HMM PF00892 YP_332746.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_332747.1 Involved in the electron transport chain YP_332748.1 identified by match to protein family HMM PF00440 YP_332749.1 identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849 YP_332750.1 identified by match to protein family HMM PF00723 YP_332753.1 identified by match to protein family HMM PF01580 YP_332758.1 identified by match to protein family HMM PF03724 YP_332759.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_332762.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_332763.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_332765.1 identified by match to protein family HMM PF00581 YP_332767.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203 YP_332768.1 identified by match to protein family HMM PF00534 YP_332770.1 identified by match to protein family HMM PF01075 YP_332772.1 identified by match to protein family HMM PF00534 YP_332773.1 identified by match to protein family HMM PF01075 YP_332774.1 identified by match to protein family HMM PF00535 YP_332777.1 identified by match to protein family HMM PF07690 YP_332780.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_332781.1 identified by match to protein family HMM PF04542 YP_332786.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_332787.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_332788.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_332789.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_332791.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_332792.1 catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP YP_332793.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_332794.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_332795.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_332797.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_332799.1 identified by match to protein family HMM PF00106 YP_332800.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_332801.1 identified by match to protein family HMM PF00107 YP_332803.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_332804.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_332805.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex YP_332806.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702 YP_332807.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_332808.1 identified by match to protein family HMM PF03891 YP_332809.1 identified by match to protein family HMM PF00893 YP_332810.1 identified by match to protein family HMM PF02687 YP_332811.1 identified by match to protein family HMM PF01152 YP_332812.1 identified by match to protein family HMM PF07973 YP_332813.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_332814.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_332818.1 Converts glucose to D-glucono-1,5 lactone YP_332819.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_332820.1 identified by match to protein family HMM PF00440 YP_332821.1 identified by match to protein family HMM PF01219 YP_332822.1 identified by match to protein family HMM PF00534 YP_332824.1 identified by match to protein family HMM PF00149 YP_332825.1 identified by match to protein family HMM PF06271 YP_332828.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_332829.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate YP_332830.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_332831.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_332832.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_332833.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_332834.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_332835.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_332836.1 identified by match to protein family HMM PF00484 YP_332838.1 identified by match to protein family HMM PF01094 YP_332839.2 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_332840.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_332841.1 identified by match to protein family HMM PF00107 YP_332842.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_332843.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_332844.1 Catalyzes the transfer of electrons from NADH to quinone YP_332845.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_332846.1 Catalyzes the transfer of electrons from NADH to quinone YP_332847.1 Catalyzes the transfer of electrons from NADH to quinone YP_332848.1 Catalyzes the transfer of electrons from NADH to quinone YP_332849.1 identified by match to protein family HMM PF01512; match to protein family HMM TIGR01959 YP_332850.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_332851.1 Catalyzes the transfer of electrons from NADH to quinone YP_332852.1 Catalyzes the transfer of electrons from NADH to quinone YP_332853.1 Catalyzes the transfer of electrons from NADH to quinone YP_332854.1 Catalyzes the transfer of electrons from NADH to quinone YP_332855.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_332857.1 Catalyzes the transfer of electrons from NADH to quinone YP_332858.1 Catalyzes the transfer of electrons from NADH to quinone YP_332860.1 identified by match to protein family HMM PF00293 YP_332861.1 identified by match to protein family HMM PF06676 YP_332862.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_332863.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_332864.1 identified by match to protein family HMM PF01575 YP_332865.1 identified by match to protein family HMM PF01575 YP_332868.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_332869.1 identified by match to protein family HMM PF01636 YP_332871.1 identified by match to protein family HMM PF00300 YP_332872.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_332873.1 identified by match to protein family HMM PF02798 YP_332874.1 catalyzes the transfer of an amino moiety YP_332876.1 identified by match to protein family HMM PF03883 YP_332877.1 identified by match to protein family HMM PF00246 YP_332880.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_332882.1 identified by match to protein family HMM PF00557 YP_332884.1 identified by match to protein family HMM PF00165 YP_332885.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_332888.1 identified by match to protein family HMM TIGR01409; match to protein family HMM TIGR01728 YP_332889.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_332893.1 identified by match to protein family HMM PF00034 YP_332895.1 identified by match to protein family HMM PF00116 YP_332896.1 identified by match to protein family HMM PF00115 YP_332897.1 identified by match to protein family HMM PF00034 YP_332900.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_332901.1 identified by match to protein family HMM PF00578 YP_332902.1 identified by match to protein family HMM PF01113; match to protein family HMM PF01370 YP_332903.1 identified by match to protein family HMM PF00873 YP_332904.1 identified by match to protein family HMM PF00873 YP_332905.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_332906.1 identified by match to protein family HMM PF01614 YP_332909.1 identified by match to protein family HMM PF02082 YP_332910.1 identified by match to protein family HMM PF01370; match to protein family HMM PF05368 YP_332911.1 identified by match to protein family HMM PF05995 YP_332912.1 identified by match to protein family HMM PF01037 YP_332913.1 identified by match to protein family HMM PF00005 YP_332914.1 identified by match to protein family HMM PF00528 YP_332916.1 identified by match to protein family HMM PF01547 YP_332920.1 identified by match to protein family HMM PF00324 YP_332922.1 identified by match to protein family HMM PF05976 YP_332924.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609 YP_332926.1 identified by match to protein family HMM PF00472 YP_332927.1 identified by match to protein family HMM PF00563 YP_332928.1 identified by match to protein family HMM PF00892 YP_332933.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_332935.1 identified by match to protein family HMM PF06764 YP_332938.1 identified by match to protein family HMM PF00174 YP_332939.1 identified by match to protein family HMM PF00892 YP_332940.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_332941.1 identified by match to protein family HMM PF03988 YP_332943.1 identified by match to protein family HMM PF00149 YP_332944.1 identified by match to protein family HMM PF00005 YP_332945.1 identified by match to protein family HMM PF00528 YP_332948.1 identified by match to protein family HMM PF00528 YP_332949.1 identified by match to protein family HMM PF01547 YP_332955.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_332961.1 identified by match to protein family HMM PF04299 YP_332962.1 identified by match to protein family HMM PF00155 YP_332963.1 identified by match to protein family HMM PF01037 YP_332964.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_332966.1 identified by match to protein family HMM PF03055 YP_332968.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_332969.1 identified by match to protein family HMM PF00106 YP_332972.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_332973.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_332975.1 identified by match to protein family HMM PF00011 YP_332976.1 identified by match to protein family HMM PF00011 YP_332977.1 identified by match to protein family HMM PF03860 YP_332979.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_332980.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_332982.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_332983.1 identified by match to protein family HMM PF03817 YP_332984.1 identified by match to protein family HMM PF03818 YP_332987.1 acyl carrier protein of malonate decarboxylase YP_332988.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A YP_332989.1 identified by match to protein family HMM PF06833 YP_332991.1 catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein YP_332993.1 identified by match to protein family HMM PF01874 YP_332995.1 identified by match to protein family HMM PF00698 YP_332999.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_333000.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_333001.2 identified by match to protein family HMM PF02694 YP_333003.1 3'-5' exonuclease of DNA polymerase III YP_333004.1 identified by match to protein family HMM PF00075 YP_333006.1 identified by match to protein family HMM PF00753 YP_333007.1 identified by match to protein family HMM PF01464; match to protein family HMM PF01476; match to protein family HMM PF06474 YP_333008.1 identified by match to protein family HMM PF07690 YP_333011.1 identified by match to protein family HMM PF00165 YP_333012.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_333013.1 identified by match to protein family HMM PF01810 YP_333014.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_333015.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_333017.1 identified by match to protein family HMM PF01985 YP_333018.1 identified by match to protein family HMM PF01728 YP_333019.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_333020.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_333021.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_333022.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975 YP_333023.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_333024.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_333025.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_333026.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_333028.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154 YP_333029.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_333030.2 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_333031.1 identified by match to protein family HMM PF02541 YP_333039.1 identified by match to protein family HMM PF00877 YP_333041.1 identified by match to protein family HMM PF05939 YP_333043.1 identified by match to protein family HMM TIGR01725 YP_333045.1 identified by match to protein family HMM PF04586 YP_333046.1 identified by match to protein family HMM PF03354 YP_333047.1 identified by match to protein family HMM PF00717 YP_333048.1 identified by match to protein family HMM PF02498 YP_333052.1 identified by match to protein family HMM PF01068 YP_333053.1 identified by match to protein family HMM PF00476 YP_333056.1 identified by match to protein family HMM PF00940 YP_333057.1 identified by match to protein family HMM PF00589 YP_333058.1 identified by match to protein family HMM PF00589 YP_333061.1 identified by match to protein family HMM PF07505 YP_333066.1 identified by match to protein family HMM PF01145 YP_333069.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_333070.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_333073.1 identified by match to protein family HMM PF01555 YP_333076.1 identified by match to protein family HMM PF06356 YP_333078.1 identified by match to protein family HMM PF01734 YP_333079.1 identified by match to protein family HMM PF01381 YP_333080.1 identified by match to protein family HMM PF01844 YP_333081.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558 YP_333082.1 identified by match to protein family HMM PF03354 YP_333083.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_333084.1 identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543 YP_333085.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554 YP_333087.1 identified by match to protein family HMM PF07772; match to protein family HMM TIGR01725 YP_333090.1 identified by match to protein family HMM PF06222 YP_333091.1 identified by match to protein family HMM TIGR01541 YP_333092.1 identified by match to protein family HMM PF05939 YP_333094.1 identified by match to protein family HMM PF05100; match to protein family HMM TIGR01600 YP_333095.1 identified by match to protein family HMM PF00877 YP_333096.1 identified by match to protein family HMM PF06805 YP_333097.1 identified by match to protein family HMM PF00041 YP_333098.1 identified by match to protein family HMM PF00959 YP_333099.1 identified by match to protein family HMM PF03245 YP_333100.1 identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571 YP_333104.1 identified by match to protein family HMM PF02586 YP_333105.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249 YP_333109.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_333111.1 identified by match to protein family HMM PF00501 YP_333112.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_333114.1 identified by match to protein family HMM PF01263 YP_333115.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_333118.1 identified by match to protein family HMM PF04586 YP_333119.1 identified by match to protein family HMM PF01844 YP_333120.1 identified by match to protein family HMM PF00665 YP_333121.1 identified by match to protein family HMM PF01527 YP_333122.1 identified by match to protein family HMM PF03681 YP_333123.1 identified by match to protein family HMM PF00589 YP_333124.1 identified by match to protein family HMM PF00589 YP_333125.1 identified by match to protein family HMM PF00665 YP_333126.1 identified by match to protein family HMM PF01527 YP_333129.1 identified by match to protein family HMM PF05488 YP_333130.1 identified by match to protein family HMM PF00376; match to protein family HMM PF02409; match to protein family HMM PF05583; match to protein family HMM TIGR00027 YP_333131.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_333134.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401 YP_333135.1 identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217 YP_333136.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402 YP_333137.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100 YP_333138.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_333139.1 identified by match to protein family HMM PF00128 YP_333141.1 identified by match to protein family HMM PF00041; match to protein family HMM TIGR01840 YP_333144.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_333145.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_333147.1 identified by match to protein family HMM PF05666 YP_333149.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_333151.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662 YP_333152.1 identified by match to protein family HMM PF00691 YP_333153.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_333155.1 identified by match to protein family HMM PF00816 YP_333159.1 identified by match to protein family HMM PF00652; match to protein family HMM PF01344 YP_333163.1 identified by match to protein family HMM PF05947 YP_333166.1 identified by match to protein family HMM PF05488 YP_333167.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_333170.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_333172.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_333177.1 identified by match to protein family HMM PF00665 YP_333182.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_333184.1 identified by match to protein family HMM PF01610 YP_333185.1 identified by match to protein family HMM PF00816 YP_333186.1 identified by match to protein family HMM PF04909 YP_333187.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_333188.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_333191.1 identified by match to protein family HMM PF05229 YP_333192.1 identified by match to protein family HMM PF05229 YP_333194.1 identified by match to protein family HMM PF00577 YP_333195.1 identified by match to protein family HMM PF05229 YP_333196.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_333198.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_333199.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_333202.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_333203.1 identified by match to protein family HMM PF00529 YP_333204.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_333205.1 identified by match to protein family HMM PF04185 YP_333206.1 identified by match to protein family HMM PF03150 YP_333209.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_333212.1 identified by match to protein family HMM PF00293 YP_333213.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_333215.1 identified by match to protein family HMM PF02515 YP_333216.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_333218.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_333219.1 identified by match to protein family HMM PF06779; match to protein family HMM PF07690 YP_333220.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_333222.1 identified by match to protein family HMM PF00293 YP_333223.1 identified by match to protein family HMM PF01906 YP_333224.1 identified by match to protein family HMM PF00465 YP_333225.1 identified by match to protein family HMM PF03061 YP_333227.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02653 YP_333228.1 identified by match to protein family HMM PF00005 YP_333229.1 identified by match to protein family HMM PF06845 YP_333230.1 identified by match to protein family HMM PF01261 YP_333231.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_333232.1 identified by match to protein family HMM PF00294 YP_333233.1 identified by match to protein family HMM PF00005 YP_333234.1 identified by match to protein family HMM PF02653 YP_333235.1 identified by match to protein family HMM PF00532 YP_333236.1 identified by match to protein family HMM PF01380 YP_333238.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_333239.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_333240.1 identified by match to protein family HMM PF01206 YP_333242.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_333243.1 identified by match to protein family HMM PF01476 YP_333244.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF05226 YP_333246.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_333247.2 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_333248.1 identified by match to protein family HMM PF00580 YP_333249.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_333250.1 identified by match to protein family HMM PF07690 YP_333251.1 identified by match to protein family HMM PF00015 YP_333252.1 identified by match to protein family HMM PF00529 YP_333253.1 identified by match to protein family HMM PF07869 YP_333254.1 identified by match to protein family HMM PF04632 YP_333255.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_333256.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_333259.1 identified by match to protein family HMM PF00149 YP_333261.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_333262.1 identified by match to protein family HMM PF00258; match to protein family HMM PF03358 YP_333263.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_333265.1 identified by match to protein family HMM PF00571 YP_333266.1 identified by match to protein family HMM PF01553; match to protein family HMM PF07690 YP_333268.2 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_333270.1 identified by match to protein family HMM PF01266; match to protein family HMM PF05187 YP_333271.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_333272.1 identified by match to protein family HMM PF03061 YP_333277.1 identified by match to protein family HMM PF00196 YP_333278.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_333279.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_333281.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_333282.1 identified by match to protein family HMM PF01522 YP_333284.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_333286.1 identified by match to protein family HMM PF00561 YP_333287.1 identified by match to protein family HMM PF01042 YP_333288.1 identified by match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_333290.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_333291.1 identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 YP_333292.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_333293.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_333295.2 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_333296.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_333297.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_333298.1 identified by match to protein family HMM PF00376 YP_333299.1 identified by match to protein family HMM PF05665 YP_333300.1 identified by match to protein family HMM PF01757 YP_333305.1 identified by match to protein family HMM PF03992 YP_333307.1 identified by match to protein family HMM PF02698 YP_333309.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_333310.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_333311.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_333312.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_333313.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_333314.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_333315.2 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_333316.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_333317.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_333319.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR00998 YP_333320.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_333321.1 identified by match to protein family HMM PF01047 YP_333322.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_333323.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_333324.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_333325.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_333326.1 identified by match to protein family HMM PF03969 YP_333336.1 identified by match to protein family HMM PF04964 YP_333337.1 identified by match to protein family HMM PF01478 YP_333338.1 identified by match to protein family HMM PF07811 YP_333339.1 identified by match to protein family HMM PF06981 YP_333341.1 identified by match to protein family HMM PF00263 YP_333343.1 identified by match to protein family HMM PF00437 YP_333344.1 identified by match to protein family HMM PF00482 YP_333345.1 identified by match to protein family HMM PF00482 YP_333347.1 identified by match to protein family HMM PF07719 YP_333351.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_333353.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_333356.1 identified by match to protein family HMM PF00501 YP_333357.1 identified by match to protein family HMM PF00440 YP_333358.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_333360.1 identified by match to protein family HMM PF00583 YP_333361.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740 YP_333363.2 identified by match to protein family HMM PF02371 YP_333365.1 identified by match to protein family HMM PF04185 YP_333366.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_333367.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_333368.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_333369.1 identified by match to protein family HMM PF01510 YP_333370.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_333371.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_333372.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408 YP_333373.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_333374.1 identified by match to protein family HMM PF00497 YP_333375.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_333376.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_333377.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_333378.1 identified by match to protein family HMM PF00293 YP_333379.1 identified by match to protein family HMM PF03928 YP_333380.1 identified by match to protein family HMM PF00893 YP_333381.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_333385.1 catalyzes the release of sulfite from alkanesulfonates YP_333386.1 identified by match to protein family HMM PF00528 YP_333387.1 identified by match to protein family HMM PF00005 YP_333388.1 identified by match to protein family HMM PF07673 YP_333389.1 identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638 YP_333391.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742 YP_333393.1 identified by match to protein family HMM PF00375 YP_333396.1 identified by match to protein family HMM PF01638 YP_333397.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_333398.1 identified by match to protein family HMM PF00248 YP_333400.1 identified by match to protein family HMM PF03773 YP_333402.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR01291 YP_333403.1 involved in the export of lipooligosaccharides during nodulation YP_333405.1 identified by match to protein family HMM PF00582 YP_333407.1 Represses a number of genes involved in the response to DNA damage YP_333408.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971 YP_333410.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139 YP_333411.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140 YP_333412.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00968 YP_333413.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_333414.1 identified by match to protein family HMM PF00532 YP_333415.1 identified by match to protein family HMM PF00005 YP_333416.1 identified by match to protein family HMM PF02653 YP_333417.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_333418.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_333419.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_333420.1 identified by match to protein family HMM PF06798 YP_333421.1 identified by match to protein family HMM PF04285 YP_333424.1 identified by match to protein family HMM PF04293 YP_333426.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883 YP_333429.1 identified by match to protein family HMM PF00005 YP_333430.1 identified by match to protein family HMM PF07673 YP_333431.1 identified by match to protein family HMM PF00528 YP_333432.1 identified by match to protein family HMM PF04964 YP_333433.1 identified by match to protein family HMM PF01478 YP_333434.1 identified by match to protein family HMM PF06981 YP_333435.1 identified by match to protein family HMM PF00263 YP_333438.1 identified by match to protein family HMM PF00072 YP_333439.1 identified by match to protein family HMM PF00437 YP_333440.1 identified by match to protein family HMM PF00482 YP_333441.1 identified by match to protein family HMM PF00482 YP_333443.1 identified by match to protein family HMM PF07719; match to protein family HMM PF07721 YP_333444.1 identified by match to protein family HMM PF07811 YP_333445.1 identified by match to protein family HMM PF07811 YP_333446.1 identified by match to protein family HMM PF00497 YP_333448.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_333449.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_333450.1 identified by match to protein family HMM PF01551 YP_333452.1 MexX; AmrA; involved in resistance to antibiotics; periplasmic membrane fusion protein; functions along with MexY and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery YP_333453.1 MexY; AmrB; involved in resistance to antibiotics; inner membrane protein; belongs to RND (resistance, nodulation, cell division) family of transporters; functions along with MexX and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery YP_333454.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_333455.1 identified by match to protein family HMM PF00419 YP_333456.1 identified by match to protein family HMM PF00577 YP_333457.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_333459.1 identified by match to protein family HMM PF00005 YP_333461.1 identified by match to protein family HMM PF00733 YP_333464.1 identified by match to protein family HMM PF00165 YP_333465.1 identified by match to protein family HMM PF00005 YP_333466.1 identified by match to protein family HMM PF02653 YP_333467.1 identified by match to protein family HMM PF00107 YP_333468.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_333469.2 identified by match to protein family HMM PF00106 YP_333471.1 RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease YP_333472.1 identified by match to protein family HMM PF03621 YP_333474.1 identified by match to protein family HMM PF00005 YP_333475.1 identified by match to protein family HMM PF07673 YP_333476.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome YP_333478.1 identified by match to protein family HMM PF01497 YP_333480.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01194 YP_333482.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_333484.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_333486.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_333488.1 identified by match to protein family HMM PF01656; match to protein family HMM PF07685 YP_333489.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_333490.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3 YP_333491.1 identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802 YP_333492.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475 YP_333494.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism YP_333496.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07726 YP_333498.1 identified by match to protein family HMM PF00589 YP_333499.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_333501.1 identified by match to protein family HMM PF01526 YP_333502.1 identified by match to protein family HMM PF02230 YP_333504.1 identified by match to protein family HMM PF00704; match to protein family HMM PF02839 YP_333505.1 identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466 YP_333506.1 catalyzes the formation of precorrin-3 from precorrin-2 YP_333507.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate YP_333508.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02435 YP_333510.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469 YP_333509.2 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_333511.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_333512.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_333513.1 identified by match to protein family HMM PF00041; match to protein family HMM PF02638 YP_333514.1 identified by match to protein family HMM PF07690 YP_333515.1 identified by match to protein family HMM PF01047 YP_333516.1 identified by match to protein family HMM PF01094 YP_333517.1 identified by match to protein family HMM PF01047 YP_333518.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_333519.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_333520.1 identified by match to protein family HMM PF03928 YP_333521.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_333522.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway YP_333523.1 catalyzes the degradation of arginine to citruline and ammonia YP_333524.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905 YP_333526.1 identified by match to protein family HMM PF00528 YP_333527.1 identified by match to protein family HMM PF00005 YP_333528.1 identified by match to protein family HMM PF00528 YP_333529.1 identified by match to protein family HMM PF04069 YP_333531.1 identified by match to protein family HMM PF07690 YP_333533.1 activates fatty acids by binding to coenzyme A YP_333534.1 identified by match to protein family HMM PF00015 YP_333536.1 identified by match to protein family HMM PF01584 YP_333537.1 identified by match to protein family HMM PF00892 YP_333538.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_333539.1 identified by match to protein family HMM PF00267 YP_333541.1 identified by match to protein family HMM PF00550; match to protein family HMM PF00975 YP_333542.1 identified by match to protein family HMM PF03621 YP_333543.1 identified by match to protein family HMM PF02373 YP_333544.1 identified by match to protein family HMM PF00155 YP_333546.1 identified by match to protein family HMM PF00551 YP_333547.1 identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032 YP_333548.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838 YP_333549.1 identified by match to protein family HMM PF00288 YP_333550.1 identified by match to protein family HMM PF07690 YP_333552.1 identified by match to protein family HMM PF00291 YP_333553.1 identified by match to protein family HMM PF00206 YP_333554.1 identified by match to protein family HMM PF00202; match to protein family HMM PF01212 YP_333555.1 identified by match to protein family HMM PF00583 YP_333556.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_333557.1 identified by match to protein family HMM PF02543 YP_333558.1 identified by match to protein family HMM PF01804 YP_333560.1 identified by match to protein family HMM PF00036 YP_333561.1 identified by match to protein family HMM PF00657; match to protein family HMM PF07646 YP_333563.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662 YP_333564.1 identified by match to protein family HMM PF01527 YP_333565.1 identified by match to protein family HMM PF00239 YP_333567.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_333568.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_333569.1 identified by match to protein family HMM PF05114 YP_333571.1 identified by match to protein family HMM PF06532 YP_333572.1 identified by match to protein family HMM PF06532 YP_333573.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_333574.1 identified by match to protein family HMM PF00581 YP_333575.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_333576.1 identified by match to protein family HMM PF01979 YP_333577.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_333580.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_333581.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_333582.1 identified by match to protein family HMM PF00221 YP_333584.1 identified by match to protein family HMM PF00267 YP_333587.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_333589.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; match to protein family HMM PF07723 YP_333590.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 YP_333591.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_333592.1 identified by match to protein family HMM PF00685 YP_333594.1 identified by match to protein family HMM PF00353; match to protein family HMM PF01839 YP_333597.1 identified by match to protein family HMM PF02321 YP_333598.1 identified by match to protein family HMM PF00691 YP_333599.1 identified by match to protein family HMM PF00816 YP_333601.1 identified by match to protein family HMM PF00267 YP_333602.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_333603.1 identified by match to protein family HMM PF00005 YP_333604.1 identified by match to protein family HMM PF00528 YP_333605.1 identified by match to protein family HMM PF00528 YP_333606.1 identified by match to protein family HMM PF01547 YP_333607.1 identified by match to protein family HMM PF07978 YP_333608.1 identified by match to protein family HMM PF00171 YP_333609.1 identified by match to protein family HMM PF00296 YP_333610.1 identified by match to protein family HMM PF01613 YP_333611.1 identified by match to protein family HMM PF00561 YP_333612.1 identified by match to protein family HMM PF06684 YP_333613.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_333615.1 identified by match to protein family HMM PF00816 YP_333618.1 identified by match to protein family HMM PF00563 YP_333619.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_333620.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_333623.1 identified by match to protein family HMM PF05658; match to protein family HMM PF05662 YP_333625.1 identified by match to protein family HMM PF00419 YP_333626.1 identified by match to protein family HMM PF00577 YP_333627.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_333628.1 identified by match to protein family HMM PF00419 YP_333630.1 identified by match to protein family HMM TIGR01840 YP_333632.1 identified by match to protein family HMM PF00465 YP_333635.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820; match to protein family HMM PF07992 YP_333636.1 identified by match to protein family HMM PF00999 YP_333639.1 identified by match to protein family HMM PF00355 YP_333643.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_333645.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_333646.1 identified by match to protein family HMM PF01061 YP_333647.1 identified by match to protein family HMM PF00005 YP_333649.1 identified by match to protein family HMM PF02424 YP_333650.1 reduces nitrous oxide to nitrogen YP_333651.1 identified by match to protein family HMM PF00005 YP_333652.1 identified by match to protein family HMM PF05048 YP_333654.1 identified by match to protein family HMM PF05573 YP_333657.1 identified by match to protein family HMM PF00034 YP_333658.1 identified by match to protein family HMM PF04205 YP_333659.1 identified by match to protein family HMM PF00804; match to protein family HMM PF00924 YP_333661.1 identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106 YP_333662.1 identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383 YP_333664.1 identified by match to protein family HMM PF01210; match to protein family HMM PF01408; match to protein family HMM PF02254; match to protein family HMM PF02737; match to protein family HMM PF03435; match to protein family HMM PF03446; match to protein family HMM PF03807 YP_333668.1 identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199 YP_333680.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_333681.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_333682.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_333683.1 identified by match to protein family HMM PF00294 YP_333684.1 identified by match to protein family HMM PF01261 YP_333686.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_333687.1 identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698 YP_333688.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00654 YP_333689.1 identified by match to protein family HMM PF00440 YP_333690.1 identified by match to protein family HMM TIGR01730 YP_333691.1 identified by match to protein family HMM PF00873 YP_333692.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_333693.1 identified by match to protein family HMM PF00376; match to protein family HMM PF05583 YP_333697.1 identified by match to protein family HMM PF04273; match to protein family HMM PF07992; match to protein family HMM TIGR01244 YP_333698.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM TIGR01199 YP_333699.1 identified by match to protein family HMM PF00753 YP_333701.1 identified by match to protein family HMM PF01925 YP_333702.1 identified by match to protein family HMM PF00528 YP_333703.1 identified by match to protein family HMM PF00528 YP_333704.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_333705.1 identified by match to protein family HMM PF01547 YP_333706.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_333707.1 identified by match to protein family HMM PF06945 YP_333708.1 identified by match to protein family HMM PF03922 YP_333710.1 identified by match to protein family HMM PF03060 YP_333712.1 identified by match to protein family HMM PF00171 YP_333713.1 identified by match to protein family HMM PF00005 YP_333714.1 identified by match to protein family HMM PF05170 YP_333715.1 identified by match to protein family HMM PF00005 YP_333716.1 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245 YP_333717.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_333718.1 catalyzes the formation of L-homocysteine from cystathionine YP_333720.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA YP_333721.1 identified by match to protein family HMM PF00294 YP_333722.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_333723.1 identified by match to protein family HMM PF05233; match to protein family HMM PF07879; match to protein family HMM TIGR01848 YP_333724.1 catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis YP_333725.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_333726.1 identified by match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01838 YP_333727.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_333728.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_333734.1 identified by match to protein family HMM PF00575 YP_333736.1 identified by match to protein family HMM PF02705 YP_333737.1 identified by match to protein family HMM PF01610 YP_333738.1 identified by match to protein family HMM PF00156 YP_333739.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_333740.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_333741.1 identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932 YP_333743.1 identified by match to protein family HMM PF01145; match to protein family HMM TIGR01933 YP_333744.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231 YP_333745.2 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_333748.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_333750.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_333752.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_333753.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_333754.1 identified by match to protein family HMM PF01027 YP_333755.2 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_333756.1 identified by match to protein family HMM PF03372 YP_333760.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses YP_333761.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_333762.1 identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080 YP_333763.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_333765.1 identified by match to protein family HMM PF02515 YP_333766.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_333767.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_333768.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_333769.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_333770.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_333772.1 identified by match to protein family HMM PF00376 YP_333773.1 identified by match to protein family HMM PF07690 YP_333774.1 identified by match to protein family HMM PF06167 YP_333775.2 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_333778.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_333780.1 identified by match to protein family HMM PF02627 YP_333781.1 identified by match to protein family HMM PF00376 YP_333783.1 identified by match to protein family HMM PF06078 YP_333784.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_333785.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_333786.1 identified by match to protein family HMM PF01152 YP_333787.1 identified by match to protein family HMM PF02391 YP_333788.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_333789.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_333790.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_333791.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_333792.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_333793.1 identified by match to protein family HMM PF04635 YP_333794.1 identified by match to protein family HMM PF02366 YP_333796.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_333797.1 identified by match to protein family HMM PF00535 YP_333798.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911 YP_333799.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370 YP_333801.1 identified by match to protein family HMM PF00578 YP_333802.1 identified by match to protein family HMM PF02562 YP_333803.1 identified by match to protein family HMM PF00877 YP_333805.1 identified by match to protein family HMM PF01384 YP_333806.1 identified by match to protein family HMM PF01865 YP_333807.1 unwinds double stranded DNA YP_333808.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_333809.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_333811.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_333814.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_333816.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409 YP_333817.1 identified by match to protein family HMM PF00116 YP_333818.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_333819.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate YP_333820.1 identified by match to protein family HMM PF01261 YP_333821.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01505 YP_333822.1 identified by match to protein family HMM PF01476 YP_333824.1 identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520 YP_333826.1 identified by match to protein family HMM PF07769 YP_333828.1 identified by match to protein family HMM PF00534 YP_333831.1 identified by match to protein family HMM PF00924 YP_333833.1 identified by match to protein family HMM PF00023 YP_333834.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_333836.1 identified by match to protein family HMM PF00583 YP_333837.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_333838.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_333839.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_333840.1 identified by match to protein family HMM PF01571 YP_333841.1 identified by match to protein family HMM PF05742 YP_333842.1 identified by match to protein family HMM PF00583 YP_333843.1 identified by match to protein family HMM PF07859 YP_333844.1 identified by match to protein family HMM PF00107 YP_333845.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_333846.1 identified by match to protein family HMM PF07876 YP_333848.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_333849.1 identified by match to protein family HMM PF00857 YP_333850.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_333851.1 activates fatty acids by binding to coenzyme A YP_333852.1 identified by match to protein family HMM PF02696 YP_333853.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357 YP_333854.1 Involved in cell division; probably involved in intracellular septation YP_333855.1 identified by match to protein family HMM PF00639 YP_333856.1 identified by match to protein family HMM PF00583 YP_333858.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_333859.1 identified by match to protein family HMM PF01266 YP_333860.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_333861.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_333862.1 identified by match to protein family HMM PF00005 YP_333863.1 identified by match to protein family HMM PF00657 YP_333865.1 identified by match to protein family HMM PF00639 YP_333871.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763 YP_333873.2 binds and unfolds substrates as part of the ClpXP protease YP_333874.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_333876.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_333877.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_333878.1 identified by match to protein family HMM PF01047 YP_333880.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_333881.1 identified by match to protein family HMM PF00196 YP_333882.1 identified by match to protein family HMM PF00267 YP_333883.1 identified by match to protein family HMM PF07690 YP_333884.1 identified by match to protein family HMM PF00850 YP_333887.1 identified by match to protein family HMM PF01382 YP_333890.1 identified by match to protein family HMM PF05488 YP_333894.1 identified by match to protein family HMM PF00494 YP_333895.1 identified by match to protein family HMM PF07394; match to protein family HMM TIGR01409 YP_333899.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation YP_333900.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_333901.1 identified by match to protein family HMM PF00578 YP_333902.1 identified by match to protein family HMM PF02627 YP_333903.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_333904.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_333905.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_333906.2 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_333907.1 identified by match to protein family HMM PF00291 YP_333910.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_333911.1 identified by match to protein family HMM PF04012 YP_333912.1 identified by match to protein family HMM PF07719 YP_333913.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_333915.1 identified by match to protein family HMM PF03446 YP_333916.1 identified by match to protein family HMM PF07311 YP_333917.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_333918.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway. YP_333919.1 identified by match to protein family HMM PF00576 YP_333921.1 identified by match to protein family HMM PF06181 YP_333922.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_333923.2 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_333925.1 identified by match to protein family HMM PF01522 YP_333926.1 identified by match to protein family HMM PF01177 YP_333927.1 identified by match to protein family HMM PF02133 YP_333928.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_333929.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine YP_333930.1 identified by match to protein family HMM PF00383 YP_333933.1 identified by match to protein family HMM PF07690 YP_333938.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_333941.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_333943.1 identified by match to protein family HMM PF05988 YP_333949.1 identified by match to protein family HMM PF03658 YP_333950.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_333951.1 identified by match to protein family HMM PF01145 YP_333952.1 identified by match to protein family HMM PF01957 YP_333953.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_333954.1 identified by match to protein family HMM PF05023 YP_333955.1 identified by match to protein family HMM PF00082 YP_333958.1 identified by match to protein family HMM PF03618 YP_333959.1 identified by match to protein family HMM PF00588 YP_333960.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_333961.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_333962.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_333963.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_333964.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_333965.1 identified by match to protein family HMM PF03938 YP_333967.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_333968.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_333969.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_333970.1 identified by match to protein family HMM PF01148 YP_333971.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_333972.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_333973.2 Catalyzes the phosphorylation of UMP to UDP YP_333974.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_333975.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_333976.2 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_333977.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_333978.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_333979.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_333980.1 identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 YP_333984.1 identified by match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_333985.1 identified by match to protein family HMM PF00892 YP_333986.2 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_333987.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_333988.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_333989.1 involved in methylation of ribosomal protein L3 YP_333990.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_333991.1 identified by match to protein family HMM PF00255 YP_333992.1 identified by match to protein family HMM PF00005 YP_333994.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_333995.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_333996.1 identified by match to protein family HMM TIGR00097 YP_334000.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_334001.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_334002.1 identified by match to protein family HMM PF00814 YP_334003.1 identified by match to protein family HMM PF00887 YP_334004.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_334005.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates YP_334006.1 identified by match to protein family HMM PF00582 YP_334007.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_334008.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_334009.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_334010.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_334011.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_334012.1 identified by match to protein family HMM PF00583 YP_334015.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_334016.1 identified by match to protein family HMM PF01734 YP_334017.1 identified by match to protein family HMM PF00877 YP_334019.1 identified by match to protein family HMM PF00005 YP_334020.1 identified by match to protein family HMM PF00528 YP_334021.1 identified by match to protein family HMM PF00528 YP_334022.1 identified by match to protein family HMM PF00496 YP_334023.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_334026.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_334027.1 identified by match to protein family HMM PF00175 YP_334028.1 identified by match to protein family HMM PF06463 YP_334029.1 identified by match to protein family HMM PF00037 YP_334030.1 identified by match to protein family HMM PF00440 YP_334031.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_334033.1 identified by match to protein family HMM PF00206 YP_334034.1 identified by match to protein family HMM PF00291 YP_334035.1 identified by match to protein family HMM PF00288 YP_334036.2 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_334037.1 identified by match to protein family HMM PF00535 YP_334038.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_334040.1 identified by match to protein family HMM PF01757 YP_334042.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_334043.1 identified by match to protein family HMM PF00456 YP_334048.1 identified by match to protein family HMM PF02668 YP_334050.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_334053.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_334054.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733 YP_334055.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_334057.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01409; match to protein family HMM TIGR01730 YP_334058.1 identified by match to protein family HMM PF00873 YP_334060.1 identified by match to protein family HMM PF00657; match to protein family HMM PF03797; match to protein family HMM TIGR01414 YP_334063.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_334064.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_334065.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_334066.1 identified by match to protein family HMM PF00730 YP_334067.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_334068.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_334069.1 identified by match to protein family HMM PF00160 YP_334070.1 identified by match to protein family HMM PF00160 YP_334071.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_334073.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_334074.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050 YP_334075.1 identified by match to protein family HMM PF00459 YP_334077.1 This protein performs the mismatch recognition step during the DNA repair process YP_334080.1 identified by match to protein family HMM PF08007 YP_334082.1 identified by match to protein family HMM PF00753 YP_334085.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_334087.2 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_334088.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_334090.1 identified by match to protein family HMM PF00561 YP_334092.1 identified by match to protein family HMM PF04305 YP_334093.1 identified by match to protein family HMM PF00132 YP_334095.1 identified by match to protein family HMM PF01430 YP_334096.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein YP_334097.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_334098.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_334099.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_334101.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_334102.1 identified by match to protein family HMM PF01026 YP_334103.1 identified by match to protein family HMM PF07673 YP_334104.1 identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212 YP_334107.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_334108.1 identified by match to protein family HMM PF00472; match to protein family HMM TIGR00020 YP_334110.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_334111.1 identified by match to protein family HMM PF05433 YP_334112.1 identified by match to protein family HMM PF04384 YP_334113.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007 YP_334114.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_334115.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_334117.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011 YP_334118.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999 YP_334119.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis YP_334120.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_334121.1 identified by match to protein family HMM PF01451 YP_334123.1 identified by match to protein family HMM PF00037 YP_334124.1 identified by match to protein family HMM PF02754 YP_334125.1 identified by match to protein family HMM PF01614 YP_334126.1 identified by match to protein family HMM PF01609 YP_334127.1 identified by match to protein family HMM PF00768 YP_334128.1 identified by match to protein family HMM TIGR01841 YP_334129.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_334130.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA YP_334132.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_334133.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_334134.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_334135.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_334136.1 identified by match to protein family HMM PF01432 YP_334137.2 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_334139.1 identified by match to protein family HMM PF07690 YP_334140.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886 YP_334142.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01580 YP_334143.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660 YP_334145.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_334146.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_334148.1 identified by match to protein family HMM PF00672; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_334149.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_334150.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_334151.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01818 YP_334153.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_334154.1 Orf1 YP_334155.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_334157.1 identified by match to protein family HMM PF00994 YP_334161.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967 YP_334162.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_334163.1 identified by match to protein family HMM PF04362 YP_334164.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_334165.1 identified by match to protein family HMM PF02515 YP_334166.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_334167.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_334169.1 identified by match to protein family HMM PF05016 YP_334171.1 identified by match to protein family HMM PF00202 YP_334172.1 identified by match to protein family HMM PF00120 YP_334173.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_334174.1 identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017 YP_334175.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_334176.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_334177.1 identified by match to protein family HMM PF05962 YP_334178.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_334179.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018 YP_334180.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_334181.1 identified by match to protein family HMM PF01648 YP_334182.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_334183.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_334184.1 identified by match to protein family HMM PF00875; match to protein family HMM PF03441 YP_334185.1 identified by match to protein family HMM PF00487 YP_334188.1 identified by match to protein family HMM PF01883 YP_334191.1 identified by match to protein family HMM PF05940 YP_334193.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_334194.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495 YP_334197.1 identified by match to protein family HMM PF01136 YP_334198.1 identified by match to protein family HMM PF01136 YP_334199.1 identified by match to protein family HMM PF03060 YP_334201.1 identified by match to protein family HMM PF00027 YP_334202.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_334203.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_334205.1 identified by match to protein family HMM PF05940 YP_334206.2 with SufCD activates cysteine desulfurase SufS YP_334207.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_334209.1 identified by match to protein family HMM PF01458 YP_334210.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212 YP_334211.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994 YP_334212.1 identified by match to protein family HMM PF01883 YP_334214.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_334215.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_334217.1 identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433 YP_334218.1 identified by match to protein family HMM PF00115 YP_334220.1 identified by match to protein family HMM PF03626 YP_334221.1 identified by match to protein family HMM PF00487 YP_334223.1 identified by match to protein family HMM PF00497 YP_334224.1 identified by match to protein family HMM PF00043 YP_334225.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism YP_334226.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_334227.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH YP_334229.1 identified by match to protein family HMM PF04958 YP_334230.1 identified by match to protein family HMM PF04958 YP_334231.2 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate YP_334233.1 identified by match to protein family HMM PF00165 YP_334234.1 identified by match to protein family HMM PF00005 YP_334235.1 identified by match to protein family HMM PF07673 YP_334236.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_334237.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_334242.1 identified by match to protein family HMM PF04794 YP_334243.1 identified by match to protein family HMM PF04055 YP_334244.1 identified by match to protein family HMM PF00535 YP_334245.1 identified by match to protein family HMM PF00296 YP_334246.1 identified by match to protein family HMM PF00561 YP_334247.1 identified by match to protein family HMM TIGR00687 YP_334249.1 identified by match to protein family HMM PF04185; match to protein family HMM PF05506; match to protein family HMM TIGR01409 YP_334250.1 identified by match to protein family HMM PF01094 YP_334251.1 identified by match to protein family HMM PF01266 YP_334254.1 identified by match to protein family HMM PF00534 YP_334255.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_334256.1 identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400 YP_334257.1 identified by match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484 YP_334258.1 identified by match to protein family HMM PF04314 YP_334260.1 identified by match to protein family HMM PF00583 YP_334261.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_334262.1 identified by match to protein family HMM PF03466 YP_334264.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_334265.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_334267.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_334268.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_334270.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_334272.2 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_334273.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_334274.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_334275.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_334276.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_334277.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_334278.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_334279.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_334280.1 identified by match to protein family HMM PF03888 YP_334281.1 identified by match to protein family HMM PF03872 YP_334282.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_334284.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_334285.1 carries the fatty acid chain in fatty acid biosynthesis YP_334286.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_334287.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_334288.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_334289.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_334290.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_334291.1 identified by match to protein family HMM PF02620 YP_334292.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_334294.1 identified by match to protein family HMM PF00590 YP_334296.1 identified by match to protein family HMM PF01343 YP_334297.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_334298.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_334299.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_334300.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_334301.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_334302.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_334304.1 identified by match to protein family HMM PF00583 YP_334306.1 identified by match to protein family HMM PF02646 YP_334307.2 Involved in the metabolism of aromatic amino acids YP_334311.1 identified by match to protein family HMM PF02589 YP_334312.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_334313.1 identified by match to protein family HMM PF00037 YP_334314.1 identified by match to protein family HMM PF05981 YP_334318.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_334319.2 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_334321.1 identified by match to protein family HMM PF03061 YP_334325.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_334327.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_334330.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_334331.1 identified by match to protein family HMM PF00186 YP_334332.1 identified by match to protein family HMM PF01609 YP_334333.1 identified by match to protein family HMM PF01523 YP_334334.1 identified by match to protein family HMM PF04751 YP_334335.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis YP_334337.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_334338.1 identified by match to protein family HMM PF01435 YP_334339.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_334341.1 catalyzes the formation of adenosylcobinamide-phosphate from adenosylcobyric acid YP_334342.1 identified by match to protein family HMM PF00293 YP_334343.1 identified by match to protein family HMM PF00583 YP_334344.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_334345.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_334346.1 Essential for efficient processing of 16S rRNA YP_334347.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_334351.1 identified by match to protein family HMM PF04055 YP_334352.1 identified by match to protein family HMM PF01037 YP_334353.1 catalyzes the oxidative deamination of D-amino acids YP_334354.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_334355.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_334356.1 identified by match to protein family HMM PF01012 YP_334357.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_334358.1 identified by match to protein family HMM PF00528 YP_334359.1 part of the metNIQ transport system for methionine YP_334360.1 identified by match to protein family HMM PF00561 YP_334361.1 identified by match to protein family HMM PF00850 YP_334362.1 identified by match to protein family HMM TIGR02282 YP_334363.2 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_334365.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197 YP_334366.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02198 YP_334367.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721 YP_334369.1 identified by match to protein family HMM PF00515 YP_334371.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_334373.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_334374.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_334375.2 fusion of tyrA/aroA YP_334376.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807 YP_334377.2 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_334380.1 negatively supercoils closed circular double-stranded DNA YP_334381.1 identified by match to protein family HMM PF00691 YP_334382.1 Involved in ubiquinone biosynthesis YP_334383.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_334386.1 identified by match to protein family HMM PF00126 YP_334389.1 identified by match to protein family HMM PF01512 YP_334390.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_334392.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_334393.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_334394.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_334395.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_334396.1 identified by match to protein family HMM PF02600 YP_334397.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_334399.1 identified by match to protein family HMM PF02625 YP_334398.2 catalyzes the formation of inosine from adenosine YP_334400.1 identified by match to protein family HMM PF00860 YP_334402.1 Catalyzes the deamination of guanine YP_334404.1 identified by match to protein family HMM PF01169 YP_334406.1 identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414 YP_334407.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_334408.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_334409.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_334412.1 identified by match to protein family HMM PF04226 YP_334413.1 identified by match to protein family HMM PF02012 YP_334414.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_334416.1 catalyzes the interconversion of chorismate to prephenate YP_334417.1 identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM TIGR00573 YP_334418.1 identified by match to protein family HMM PF00313 YP_334420.1 identified by match to protein family HMM PF00267 YP_334421.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_334422.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_334423.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_334424.1 Essential for recycling GMP and indirectly, cGMP YP_334426.1 identified by match to protein family HMM PF03755; match to protein family HMM TIGR00255 YP_334425.2 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_334427.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_334428.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_334433.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_334435.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193 YP_334436.1 identified by match to protein family HMM PF00654 YP_334439.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_334440.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_334442.1 blocks the formation of polar Z-ring septums YP_334443.1 identified by match to protein family HMM PF00583 YP_334445.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_334448.1 identified by match to protein family HMM PF00004 YP_334449.1 participates with LolB in the incorporation of lipoprotein into the outer membrane YP_334450.1 identified by match to protein family HMM PF01580 YP_334452.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_334453.1 identified by match to protein family HMM PF01713 YP_334454.1 identified by match to protein family HMM PF03458 YP_334455.1 identified by match to protein family HMM PF00005 YP_334456.1 identified by match to protein family HMM PF00528 YP_334458.1 identified by match to protein family HMM PF00528 YP_334459.1 identified by match to protein family HMM PF01547 YP_334461.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_334462.1 identified by match to protein family HMM TIGR01198 YP_334463.1 glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_334464.1 identified by match to protein family HMM PF00497 YP_334465.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_334466.1 identified by match to protein family HMM PF07673 YP_334467.1 catalyzes the formation of pyruvate from D-cysteine YP_334469.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_334472.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_334473.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_334474.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_334475.2 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis YP_334476.2 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_334477.1 identified by match to protein family HMM PF00155 YP_334478.1 identified by match to protein family HMM PF01464 YP_334479.1 identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148 YP_334480.1 identified by match to protein family HMM PF01810 YP_334481.2 catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine YP_334484.1 identified by match to protein family HMM PF02325 YP_334485.1 identified by match to protein family HMM PF02641 YP_334489.1 identified by match to protein family HMM PF02146 YP_334491.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_334492.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_334493.1 identified by match to protein family HMM PF03692 YP_334494.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_334496.1 identified by match to protein family HMM PF01135; match to protein family HMM PF05175 YP_334497.1 identified by match to protein family HMM PF00581 YP_334498.1 catalyze the conversion of beta amino acids to the corresponding beta keto acid with pyruvate as the amine acceptor YP_334499.1 identified by match to protein family HMM TIGR01409 YP_334500.1 identified by match to protein family HMM PF02653 YP_334501.1 identified by match to protein family HMM PF02653; match to protein family HMM TIGR01409 YP_334502.1 identified by match to protein family HMM PF00005 YP_334503.1 identified by match to protein family HMM PF00005 YP_334504.1 identified by match to protein family HMM PF01774 YP_334505.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_334506.1 identified by match to protein family HMM PF00699; match to protein family HMM TIGR00192 YP_334507.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_334508.1 involved in the assembly of the urease metallocenter; possible nickel donor YP_334509.1 identified by match to protein family HMM PF01730 YP_334510.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101 YP_334511.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A YP_334514.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193 YP_334515.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_334517.1 identified by match to protein family HMM PF00535 YP_334518.1 identified by match to protein family HMM PF00534 YP_334520.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_334521.1 identified by match to protein family HMM PF00953 YP_334522.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02629; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_334523.1 identified by match to protein family HMM PF00953 YP_334524.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_334525.1 identified by match to protein family HMM PF00535 YP_334526.1 identified by match to protein family HMM PF00535 YP_334527.1 identified by match to protein family HMM PF00535 YP_334529.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_334530.1 identified by match to protein family HMM PF01757 YP_334531.1 identified by match to protein family HMM PF00005 YP_334532.1 identified by match to protein family HMM PF01061 YP_334533.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_334534.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_334535.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_334536.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_334537.1 identified by match to protein family HMM PF01553 YP_334538.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_334539.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_334540.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_334541.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_334542.2 identified by match to protein family HMM PF02622 YP_334545.1 identified by match to protein family HMM PF00301 YP_334547.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_334548.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_334551.1 identified by match to protein family HMM PF01638 YP_334554.1 identified by match to protein family HMM PF00107 YP_334557.1 identified by match to protein family HMM PF03922 YP_334561.1 identified by match to protein family HMM PF01638 YP_334562.1 identified by match to protein family HMM PF00753 YP_334563.1 identified by match to protein family HMM PF00583 YP_334564.1 identified by match to protein family HMM PF01381 YP_334565.1 identified by match to protein family HMM PF01810 YP_334566.1 identified by match to protein family HMM PF03009 YP_334567.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_334568.1 identified by match to protein family HMM PF01925 YP_334570.1 identified by match to protein family HMM PF00450 YP_334573.1 identified by match to protein family HMM PF04972 YP_334576.1 identified by match to protein family HMM PF01323 YP_334577.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_334579.1 identified by match to protein family HMM PF01032 YP_334580.1 identified by match to protein family HMM PF01497 YP_334581.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_334583.1 identified by match to protein family HMM PF01547 YP_334586.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_334587.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450 YP_334588.1 identified by match to protein family HMM PF07690 YP_334589.1 identified by match to protein family HMM PF00165 YP_334590.1 identified by match to protein family HMM PF00892 YP_334591.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212 YP_334592.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_334593.1 Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes YP_334594.1 identified by match to protein family HMM PF00881; match to protein family HMM TIGR02476 YP_334596.1 identified by match to protein family HMM PF07690 YP_334598.1 identified by match to protein family HMM PF07690 YP_334599.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR01266 YP_334600.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine YP_334601.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_334603.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF07992 YP_334604.1 identified by match to protein family HMM PF00753 YP_334605.1 identified by match to protein family HMM PF00563 YP_334607.1 identified by match to protein family HMM PF04828 YP_334608.1 identified by match to protein family HMM PF01614 YP_334609.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_334611.1 identified by match to protein family HMM PF00578 YP_334612.1 identified by match to protein family HMM PF05957 YP_334615.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_334617.1 identified by match to protein family HMM TIGR02532 YP_334618.1 identified by match to protein family HMM TIGR02532 YP_334621.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_334622.2 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_334623.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_334624.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_334625.1 identified by match to protein family HMM PF01618 YP_334626.1 identified by match to protein family HMM PF02472 YP_334627.1 identified by match to protein family HMM PF06519 YP_334628.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_334629.1 identified by match to protein family HMM PF00691 YP_334632.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_334633.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_334634.1 identified by match to protein family HMM TIGR01670 YP_334635.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_334636.1 identified by match to protein family HMM PF00534 YP_334638.1 identified by match to protein family HMM PF00132 YP_334640.1 identified by match to protein family HMM PF05159 YP_334643.1 identified by match to protein family HMM PF02706; match to protein family HMM TIGR01005 YP_334644.1 identified by match to protein family HMM PF01451 YP_334645.1 identified by match to protein family HMM PF02563 YP_334646.1 identified by match to protein family HMM PF02397 YP_334647.1 identified by match to protein family HMM PF00165 YP_334648.1 identified by match to protein family HMM PF01569 YP_334651.1 identified by match to protein family HMM PF02012 YP_334654.1 identified by match to protein family HMM PF00155; match to protein family HMM PF01212 YP_334655.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_334656.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801 YP_334658.1 identified by match to protein family HMM PF00884 YP_334659.1 identified by match to protein family HMM PF00106 YP_334660.1 identified by match to protein family HMM PF05159 YP_334661.1 identified by match to protein family HMM PF00483 YP_334662.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_334663.1 identified by match to protein family HMM PF00288 YP_334665.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_334666.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_334667.1 identified by match to protein family HMM PF00534 YP_334668.1 identified by match to protein family HMM PF05040 YP_334669.1 identified by match to protein family HMM PF00534 YP_334670.1 identified by match to protein family HMM PF01061 YP_334672.1 identified by match to protein family HMM PF02563 YP_334673.1 identified by match to protein family HMM PF00534 YP_334674.1 identified by match to protein family HMM PF05159 YP_334675.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_334676.1 identified by match to protein family HMM PF00310 YP_334677.1 identified by match to protein family HMM PF00924 YP_334678.1 identified by match to protein family HMM PF00597 YP_334679.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_334680.2 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_334681.1 identified by match to protein family HMM TIGR02246 YP_334682.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_334684.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_334685.1 identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942 YP_334686.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_334687.1 identified by match to protein family HMM PF01712 YP_334688.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_334690.1 identified by match to protein family HMM PF00425 YP_334691.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_334693.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_334695.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_334696.1 identified by match to protein family HMM PF01479 YP_334697.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_334698.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_334699.1 catalyzes the phosphorylation of NAD to NADP YP_334700.1 identified by match to protein family HMM TIGR00634 YP_334702.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_334703.1 identified by match to protein family HMM TIGR02099 YP_334704.1 identified by match to protein family HMM PF00795 YP_334706.1 identified by match to protein family HMM PF01523 YP_334707.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_334708.1 identified by match to protein family HMM PF01609 YP_334709.1 identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_334711.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_334712.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_334713.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_334716.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_334717.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_334718.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_334719.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_334720.1 identified by match to protein family HMM TIGR01098 YP_334721.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315 YP_334722.1 identified by match to protein family HMM PF07969; match to protein family HMM TIGR02318 YP_334723.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02324 YP_334724.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02323 YP_334725.1 identified by match to protein family HMM PF05861 YP_334726.1 identified by match to protein family HMM PF05845 YP_334727.1 identified by match to protein family HMM PF06754 YP_334728.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02325 YP_334729.1 identified by match to protein family HMM PF06299 YP_334731.1 identified by match to protein family HMM TIGR02322 YP_334732.2 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway YP_334734.1 identified by match to protein family HMM PF01638 YP_334735.1 identified by match to protein family HMM PF00210 YP_334737.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_334738.1 identified by match to protein family HMM PF03466 YP_334739.1 catalyzes branch migration in Holliday junction intermediates YP_334741.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_334742.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_334743.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_334744.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_334745.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_334747.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_334748.1 identified by match to protein family HMM PF04264 YP_334749.1 identified by match to protein family HMM PF04264 YP_334750.1 identified by match to protein family HMM PF01292 YP_334751.1 identified by match to protein family HMM PF04403 YP_334752.1 identified by match to protein family HMM PF04403 YP_334753.1 identified by match to protein family HMM PF02470 YP_334754.1 identified by match to protein family HMM PF03886 YP_334758.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02926 YP_334763.1 identified by match to protein family HMM PF02233 YP_334765.1 identified by match to protein family HMM PF01262; match to protein family HMM PF05222 YP_334766.1 identified by match to protein family HMM PF00293 YP_334767.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_334768.1 identified by match to protein family HMM PF01645 YP_334769.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_334770.1 identified by match to protein family HMM PF00557; match to protein family HMM PF05195 YP_334771.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988 YP_334772.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_334773.1 identified by match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_334775.1 involved in de novo purine biosynthesis YP_334776.2 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_334777.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_334778.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_334781.1 identified by match to protein family HMM PF00300 YP_334782.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_334783.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_334786.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_334787.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_334788.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_334789.1 identified by match to protein family HMM PF00165 YP_334790.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_334791.1 forms a direct contact with the tRNA during translation YP_334792.2 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_334793.1 identified by match to protein family HMM PF02566 YP_334796.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_334797.1 identified by match to protein family HMM PF00310 YP_334798.1 identified by match to protein family HMM PF00011 YP_334799.1 identified by match to protein family HMM PF00011 YP_334800.1 identified by match to protein family HMM PF00166 YP_334802.1 identified by match to protein family HMM PF07673 YP_334803.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_334804.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_334805.1 identified by match to protein family HMM PF00497 YP_334806.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812 YP_334807.1 identified by match to protein family HMM PF07690 YP_334808.1 identified by match to protein family HMM PF03466 YP_334809.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_334810.1 identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313 YP_334811.1 identified by match to protein family HMM PF02447; match to protein family HMM TIGR00791 YP_334812.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_334813.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_334815.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_334817.1 identified by match to protein family HMM PF03653 YP_334818.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_334820.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_334822.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_334824.1 identified by match to protein family HMM PF02472 YP_334825.1 identified by match to protein family HMM PF01618 YP_334826.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_334827.1 identified by match to protein family HMM PF04355 YP_334828.1 identified by match to protein family HMM PF01475 YP_334829.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_334830.1 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_334831.1 involved in the transport of C4-dicarboxylates across the membrane YP_334832.1 identified by match to protein family HMM PF07729 YP_334833.1 controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source YP_334834.2 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide YP_334836.1 identified by match to protein family HMM PF07690 YP_334837.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_334838.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_334839.2 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_334840.1 identified by match to protein family HMM PF00903 YP_334841.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_334844.1 identified by match to protein family HMM PF00545 YP_334845.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_334846.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_334847.1 identified by match to protein family HMM PF04608 YP_334848.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_334849.1 OMP decarboxylase; OMPDCase; OMPdecase; type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_334850.1 identified by match to protein family HMM PF01263 YP_334852.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_334853.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_334854.2 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_334856.1 identified by match to protein family HMM PF00532; match to protein family HMM TIGR01409 YP_334857.1 identified by match to protein family HMM PF00106 YP_334858.2 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism YP_334859.1 identified by match to protein family HMM PF05035 YP_334860.1 identified by match to protein family HMM PF01614 YP_334863.2 glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_334864.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_334865.1 identified by match to protein family HMM PF00773 YP_334866.1 identified by match to protein family HMM PF05728 YP_334867.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01081 YP_334870.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_334871.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_334872.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_334873.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_334875.1 identified by match to protein family HMM PF00578 YP_334877.1 identified by match to protein family HMM PF00294 YP_334879.1 identified by match to protein family HMM PF05433 YP_334881.1 Catalyzes the rate-limiting step in dNTP synthesis YP_334882.1 Catalyzes the rate-limiting step in dNTP synthesis YP_334883.1 identified by match to protein family HMM PF01510 YP_334885.1 identified by match to protein family HMM PF01578 YP_334886.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_334887.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively YP_334888.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_334889.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_334890.1 hydrolyzes diadenosine polyphosphate YP_334892.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_334893.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_334894.1 involved in the peptidyltransferase reaction during translation YP_334895.1 identified by match to protein family HMM PF00348 YP_334896.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_334897.1 identified by match to protein family HMM PF00437 YP_334898.1 identified by match to protein family HMM PF00482 YP_334899.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_334900.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_334901.1 identified by match to protein family HMM PF07072 YP_334902.1 identified by match to protein family HMM PF03884 YP_334903.1 identified by match to protein family HMM PF00293 YP_334904.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_334905.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_334907.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_334908.1 identified by match to protein family HMM PF00578 YP_334909.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_334910.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_334911.1 identified by match to protein family HMM PF03799 YP_334912.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_334914.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_334915.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_334916.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614 YP_334917.2 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_334918.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_334919.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_334920.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_334921.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_334922.1 identified by match to protein family HMM TIGR02209 YP_334923.2 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_334925.1 identified by match to protein family HMM PF00267 YP_334926.1 activates fatty acids by binding to coenzyme A YP_334927.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_334928.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_334929.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02288 YP_334930.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_334931.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_334932.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; match to protein family HMM TIGR02286 YP_334933.1 identified by match to protein family HMM TIGR02155 YP_334935.1 identified by match to protein family HMM PF03562; match to protein family HMM PF06725 YP_334937.1 protein associated with Co2+ and Mg2+ efflux YP_334938.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_334939.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_334940.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_334941.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_334942.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_334943.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_334944.1 identified by match to protein family HMM PF01928 YP_334945.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_334946.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_334947.1 identified by match to protein family HMM PF00595; match to protein family HMM PF05299 YP_334950.1 identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988 YP_334952.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_334953.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_334955.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773 YP_334958.1 identified by match to protein family HMM PF03009; match to protein family HMM TIGR01409 YP_334960.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_334961.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_334962.1 identified by match to protein family HMM PF00857 YP_334963.1 identified by match to protein family HMM PF00557 YP_334965.2 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_334968.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_334969.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536 YP_334971.1 identified by match to protein family HMM TIGR00365 YP_334970.2 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate YP_334972.1 identified by match to protein family HMM PF02900 YP_334973.1 identified by match to protein family HMM PF00324 YP_334974.1 identified by match to protein family HMM PF00313 YP_334977.1 identified by match to protein family HMM PF00881 YP_334978.1 identified by match to protein family HMM PF07690 YP_334979.1 identified by match to protein family HMM PF00440 YP_334981.1 identified by match to protein family HMM PF07209 YP_334983.1 identified by match to protein family HMM PF05175 YP_334985.1 identified by match to protein family HMM PF01757 YP_334987.1 identified by match to protein family HMM PF01433 YP_334990.1 identified by match to protein family HMM PF00529 YP_334991.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412 YP_334993.1 identified by match to protein family HMM PF02321 YP_334997.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_335000.1 identified by match to protein family HMM PF00691 YP_335001.1 identified by match to protein family HMM PF06812 YP_335003.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_335004.1 identified by match to protein family HMM PF06996 YP_335005.1 identified by match to protein family HMM PF05947 YP_335006.1 identified by match to protein family HMM PF07025 YP_335007.1 identified by match to protein family HMM PF05638 YP_335008.1 identified by match to protein family HMM PF05943 YP_335010.1 identified by match to protein family HMM PF05591 YP_335011.1 identified by match to protein family HMM PF07719 YP_335013.1 identified by match to protein family HMM PF05936 YP_335017.1 identified by match to protein family HMM TIGR01634 YP_335020.1 identified by match to protein family HMM PF04851 YP_335021.1 identified by match to protein family HMM PF01555 YP_335023.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_335030.1 identified by match to protein family HMM PF03235; match to protein family HMM PF07510 YP_335034.1 identified by match to protein family HMM PF00589 YP_335035.1 identified by match to protein family HMM PF04386 YP_335036.1 identified by match to protein family HMM PF02798 YP_335037.1 identified by match to protein family HMM PF02167 YP_335038.1 identified by match to protein family HMM PF00033 YP_335040.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416 YP_335041.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_335042.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_335044.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_335045.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410 YP_335046.1 Orf4; TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_335047.1 identified by match to protein family HMM PF01230 YP_335049.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_335050.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_335051.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_335052.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_335053.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_335054.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_335055.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_335056.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_335057.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_335058.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_335059.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_335060.1 identified by match to protein family HMM PF01722 YP_335061.1 identified by match to protein family HMM PF01061 YP_335062.1 identified by match to protein family HMM PF00005 YP_335064.1 identified by match to protein family HMM PF05494 YP_335065.1 identified by match to protein family HMM PF04333 YP_335066.1 identified by match to protein family HMM PF02470 YP_335067.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_335068.1 identified by match to protein family HMM PF00005 YP_335069.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_335071.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_335073.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate YP_335074.1 identified by match to protein family HMM PF01266 YP_335075.2 identified by match to protein family HMM PF00005; match to protein family HMM PF06472 YP_335076.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_335077.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_335080.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_335082.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898 YP_335083.1 identified by match to protein family HMM PF07605 YP_335084.1 identified by match to protein family HMM PF03922 YP_335085.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate YP_335086.1 part of the UgpABCE glycerol-3-phosphate uptake system YP_335088.1 with UgpABC is involved in uptake of glycerol-3-phosphate YP_335089.1 identified by match to protein family HMM PF00528 YP_335090.1 with UgpACE is involved in the uptake of glycerol-3-phosphate YP_335091.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_335092.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_335093.2 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_335094.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515 YP_335096.1 identified by match to protein family HMM PF05137 YP_335098.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_335099.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly YP_335101.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_335102.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_335104.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_335105.1 identified by match to protein family HMM PF01578 YP_335107.1 identified by match to protein family HMM PF05140 YP_335108.1 identified by match to protein family HMM PF00034 YP_335109.2 binds guanine nucleotides; depletion results in defective cell division YP_335110.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_335111.1 identified by match to protein family HMM PF02683 YP_335112.1 identified by match to protein family HMM PF03091 YP_335113.1 is a component of the macrolide binding site in the peptidyl transferase center YP_335114.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_335115.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_335116.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_335117.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_335118.2 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_335119.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_335120.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_335121.1 late assembly protein YP_335122.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_335123.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_335124.1 binds 5S rRNA along with protein L5 and L25 YP_335125.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_335126.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_335127.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_335128.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_335129.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_335130.2 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_335131.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_335132.1 one of the stabilizing components for the large ribosomal subunit YP_335133.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_335134.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_335135.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_335136.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_335137.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_335138.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_335139.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_335140.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_335141.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_335142.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_335143.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_335145.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_335146.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_335147.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_335148.1 identified by match to protein family HMM PF01610 YP_335149.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_335150.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_335151.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_335152.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_335153.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_335154.1 binds directly to 23S ribosomal RNA YP_335155.1 Modulates Rho-dependent transcription termination YP_335156.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_335157.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_335160.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801 YP_335161.1 identified by match to protein family HMM PF00109; match to protein family HMM PF01212; match to protein family HMM PF02801 YP_335162.1 identified by match to protein family HMM PF01266 YP_335163.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_335164.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00654 YP_335166.1 identified by match to protein family HMM PF00571; match to protein family HMM PF04982 YP_335167.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_335168.1 identified by match to protein family HMM PF01699 YP_335169.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_335170.1 identified by match to protein family HMM PF02517 YP_335171.1 identified by match to protein family HMM PF01557 YP_335172.1 identified by match to protein family HMM PF00165 YP_335174.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545 YP_335175.1 identified by match to protein family HMM PF04264 YP_335176.1 identified by match to protein family HMM PF03640 YP_335177.1 identified by match to protein family HMM PF04542 YP_335178.1 identified by match to protein family HMM PF04773 YP_335179.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_335180.1 identified by match to protein family HMM PF02653 YP_335181.1 identified by match to protein family HMM PF02653 YP_335182.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00532 YP_335185.1 identified by match to protein family HMM PF02770; match to protein family HMM PF08028 YP_335186.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_335188.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386 YP_335189.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_335190.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_335191.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_335192.1 identified by match to protein family HMM PF02321 YP_335196.1 identified by match to protein family HMM PF04008 YP_335197.1 identified by match to protein family HMM PF04073 YP_335198.1 identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_335200.1 identified by match to protein family HMM PF04352 YP_335213.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_335215.1 identified by match to protein family HMM PF05175 YP_335219.1 identified by match to protein family HMM TIGR00097 YP_335222.1 identified by match to protein family HMM PF01209 YP_335225.1 identified by match to protein family HMM PF00293 YP_335230.1 identified by match to protein family HMM PF00892 YP_335231.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905 YP_335232.1 identified by match to protein family HMM PF01694 YP_335233.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_335237.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_335238.1 identified by match to protein family HMM PF00873 YP_335239.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_335240.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_335241.1 identified by match to protein family HMM PF00400 YP_335243.1 identified by match to protein family HMM PF03781 YP_335244.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR00326 YP_335245.1 identified by match to protein family HMM PF00891 YP_335246.1 identified by match to protein family HMM PF00903 YP_335247.1 identified by match to protein family HMM PF07690 YP_335251.1 identified by match to protein family HMM PF00196 YP_335253.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_335254.1 identified by match to protein family HMM PF03551 YP_335256.1 identified by match to protein family HMM PF02110 YP_335259.1 identified by match to protein family HMM PF03547 YP_335264.1 identified by match to protein family HMM PF00582 YP_335266.1 identified by match to protein family HMM PF00346 YP_335267.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_335269.1 identified by match to protein family HMM PF00146 YP_335270.1 identified by match to protein family HMM PF06912 YP_335272.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_335273.1 identified by match to protein family HMM PF01564 YP_335274.1 identified by match to protein family HMM PF01402 YP_335276.1 identified by match to protein family HMM PF07690 YP_335277.1 identified by match to protein family HMM PF00639 YP_335278.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_335279.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_335280.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660 YP_335281.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580 YP_335285.1 identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229 YP_335286.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_335287.1 identified by match to protein family HMM PF00072 YP_335288.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_335289.1 identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976 YP_335290.1 identified by match to protein family HMM PF02668 YP_335291.1 identified by match to protein family HMM PF07690 YP_335292.1 identified by match to protein family HMM PF00975 YP_335293.1 identified by match to protein family HMM PF00583 YP_335294.1 identified by match to protein family HMM PF00753 YP_335295.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801 YP_335296.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_335297.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801 YP_335298.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801 YP_335299.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_335300.1 identified by match to protein family HMM PF01432 YP_335301.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_335302.1 identified by match to protein family HMM PF00999 YP_335304.1 identified by match to protein family HMM PF00765 YP_335305.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01733 YP_335306.1 identified by match to protein family HMM PF05721; match to protein family HMM TIGR01762 YP_335314.1 identified by match to protein family HMM PF05717 YP_335315.1 identified by match to protein family HMM PF00665 YP_335316.1 identified by match to protein family HMM PF01527 YP_335318.1 identified by match to protein family HMM PF01839; match to protein family HMM PF03534; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_335320.1 identified by match to protein family HMM PF01839; match to protein family HMM PF03534 YP_335321.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_335323.1 identified by match to protein family HMM PF00486 YP_335325.1 identified by match to protein family HMM PF01527 YP_335326.1 identified by match to protein family HMM PF00665 YP_335328.1 identified by match to protein family HMM PF00158 YP_335329.1 identified by match to protein family HMM PF00665 YP_335334.1 identified by match to protein family HMM PF03534 YP_335336.1 identified by match to protein family HMM PF01839; match to protein family HMM PF03534; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_335339.1 identified by match to protein family HMM PF00550 YP_335340.1 identified by match to protein family HMM PF00501 YP_335341.1 identified by match to protein family HMM PF00296 YP_335345.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_335346.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733 YP_335348.1 identified by match to protein family HMM PF00109; match to protein family HMM PF00202; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF02801 YP_335352.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_335353.1 identified by match to protein family HMM PF07883 YP_335354.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_335355.1 identified by match to protein family HMM PF08085 YP_335356.2 catalyzes the conversion of carbamoyl phosphate and aspartate to form N-carbamoyl aspartate YP_335357.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_335359.1 identified by match to protein family HMM PF03171 YP_335361.1 identified by match to protein family HMM PF01527 YP_335362.1 identified by match to protein family HMM PF05488 YP_335366.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_335367.1 identified by match to protein family HMM PF00816 YP_335368.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_335369.1 identified by match to protein family HMM PF02581 YP_335371.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_335372.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_335373.1 identified by match to protein family HMM PF00532 YP_335374.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_335375.1 identified by match to protein family HMM TIGR02276 YP_335376.1 identified by match to protein family HMM PF01266 YP_335377.1 identified by match to protein family HMM PF00348 YP_335378.1 identified by match to protein family HMM PF03936 YP_335379.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02254 YP_335384.1 identified by match to protein family HMM PF06983 YP_335385.1 identified by match to protein family HMM PF01544 YP_335386.1 identified by match to protein family HMM PF00455 YP_335387.1 identified by match to protein family HMM PF07690 YP_335389.1 identified by match to protein family HMM PF01547 YP_335390.1 identified by match to protein family HMM PF00528 YP_335392.1 identified by match to protein family HMM PF00528 YP_335393.1 identified by match to protein family HMM PF00107 YP_335394.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_335395.1 identified by match to protein family HMM PF00165 YP_335396.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_335397.1 identified by match to protein family HMM PF00144; match to protein family HMM PF00768 YP_335398.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_335400.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00384; match to protein family HMM PF00667; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_335401.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378 YP_335402.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374 YP_335403.1 identified by match to protein family HMM PF07690 YP_335404.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469 YP_335405.1 identified by match to protein family HMM PF00072; match to protein family HMM PF03861 YP_335407.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_335409.1 identified by match to protein family HMM PF00850 YP_335411.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_335412.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_335413.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_335414.1 identified by match to protein family HMM PF03466 YP_335415.1 identified by match to protein family HMM PF00106 YP_335416.1 identified by match to protein family HMM PF02515 YP_335418.1 identified by match to protein family HMM PF00107 YP_335419.1 identified by match to protein family HMM PF00465 YP_335425.1 identified by match to protein family HMM PF05650 YP_335426.1 identified by match to protein family HMM PF00691 YP_335428.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_335429.1 identified by match to protein family HMM PF03621 YP_335430.1 identified by match to protein family HMM PF07690 YP_335431.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801; match to protein family HMM TIGR01733 YP_335433.1 identified by match to protein family HMM PF00550 YP_335434.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_335435.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_335436.1 identified by match to protein family HMM PF00501 YP_335437.1 identified by match to protein family HMM PF04542 YP_335438.1 identified by match to protein family HMM PF01205 YP_335439.1 identified by match to protein family HMM PF00892 YP_335441.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593 YP_335442.1 identified by match to protein family HMM PF00440 YP_335443.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_335445.1 identified by match to protein family HMM PF03976 YP_335452.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412 YP_335455.1 identified by match to protein family HMM PF02321 YP_335457.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066 YP_335459.1 identified by match to protein family HMM PF04307 YP_335463.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_335466.1 identified by match to protein family HMM PF00324 YP_335470.1 identified by match to protein family HMM PF04946 YP_335471.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_335473.1 identified by match to protein family HMM PF01596 YP_335474.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_335476.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR02424 YP_335477.1 identified by match to protein family HMM PF00775; match to protein family HMM TIGR02422 YP_335478.1 identified by match to protein family HMM PF00775; match to protein family HMM TIGR02423 YP_335479.1 identified by match to protein family HMM PF04951 YP_335480.1 identified by match to protein family HMM PF03576 YP_335481.1 identified by match to protein family HMM PF00528 YP_335482.1 identified by match to protein family HMM PF00528 YP_335483.1 identified by match to protein family HMM PF00496 YP_335484.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_335485.1 identified by match to protein family HMM PF01112 YP_335486.1 identified by match to protein family HMM PF01380 YP_335487.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_335488.1 identified by match to protein family HMM PF00144 YP_335490.1 identified by match to protein family HMM PF04185 YP_335493.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_335494.1 identified by match to protein family HMM PF00892 YP_335495.1 identified by match to protein family HMM PF07973 YP_335496.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_335498.1 identified by match to protein family HMM PF07045 YP_335501.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_335503.1 catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate YP_335504.1 identified by match to protein family HMM PF01037 YP_335506.1 identified by match to protein family HMM PF01936 YP_335507.1 identified by match to protein family HMM PF07690 YP_335508.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_335509.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_335510.1 identified by match to protein family HMM PF04909 YP_335511.1 identified by match to protein family HMM PF00149 YP_335512.1 identified by match to protein family HMM PF03150 YP_335513.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_335515.1 identified by match to protein family HMM PF00583 YP_335516.1 identified by match to protein family HMM PF04143 YP_335517.1 identified by match to protein family HMM PF04143 YP_335518.1 identified by match to protein family HMM PF01022 YP_335520.1 identified by match to protein family HMM PF01292 YP_335521.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979 YP_335523.1 identified by match to protein family HMM PF01381 YP_335524.1 identified by match to protein family HMM PF00132 YP_335525.1 identified by match to protein family HMM PF00581 YP_335526.1 identified by match to protein family HMM PF00326; match to protein family HMM PF02897 YP_335528.1 identified by match to protein family HMM PF00529 YP_335529.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_335530.1 identified by match to protein family HMM TIGR01556 YP_335531.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_335532.1 identified by match to protein family HMM PF03033 YP_335534.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes YP_335535.1 catalyzes the formation of betaine from betaine aldehyde YP_335536.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_335537.1 identified by match to protein family HMM PF05853 YP_335538.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_335539.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229 YP_335540.1 identified by match to protein family HMM PF00072 YP_335541.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229 YP_335542.1 identified by match to protein family HMM PF02566 YP_335543.1 Involved in the metabolism of aromatic amino acids YP_335547.1 identified by match to protein family HMM PF00313 YP_335548.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_335550.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526 YP_335551.1 identified by match to protein family HMM PF04268 YP_335552.1 identified by match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372 YP_335553.1 identified by match to protein family HMM PF04267 YP_335554.1 identified by match to protein family HMM PF01266; match to protein family HMM TIGR01373 YP_335555.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_335556.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_335558.1 identified by match to protein family HMM PF04337 YP_335559.1 identified by match to protein family HMM PF00043 YP_335560.1 identified by match to protein family HMM PF00293 YP_335561.1 identified by match to protein family HMM PF07300 YP_335562.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_335564.1 identified by match to protein family HMM PF01654 YP_335565.1 identified by match to protein family HMM PF03713 YP_335566.1 identified by match to protein family HMM PF02308 YP_335567.1 identified by match to protein family HMM PF03372 YP_335569.1 identified by match to protein family HMM PF00639 YP_335577.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 YP_335578.1 identified by match to protein family HMM PF00165 YP_335579.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401 YP_335580.1 identified by match to protein family HMM TIGR02559 YP_335581.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546 YP_335582.1 identified by match to protein family HMM TIGR02499 YP_335583.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544 YP_335584.1 identified by match to protein family HMM TIGR02558 YP_335585.1 identified by match to protein family HMM TIGR02561 YP_335586.1 identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404 YP_335587.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 YP_335588.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551 YP_335589.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response YP_335590.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403 YP_335592.1 identified by match to protein family HMM PF05932 YP_335594.1 identified by match to protein family HMM PF07883 YP_335595.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_335596.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_335597.1 identified by match to protein family HMM PF03446 YP_335598.1 identified by match to protein family HMM PF07005 YP_335599.1 identified by match to protein family HMM PF00596 YP_335600.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_335602.1 identified by match to protein family HMM PF01261 YP_335603.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_335604.1 identified by match to protein family HMM PF05118 YP_335605.1 identified by match to protein family HMM PF05118 YP_335606.1 identified by match to protein family HMM PF04069 YP_335607.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_335608.1 identified by match to protein family HMM PF00528 YP_335609.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_335610.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_335613.1 identified by match to protein family HMM PF01022 YP_335614.1 identified by match to protein family HMM PF00903 YP_335615.1 identified by match to protein family HMM PF01451 YP_335616.1 identified by match to protein family HMM PF01758 YP_335617.1 identified by match to protein family HMM PF05658; match to protein family HMM PF05662 YP_335621.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_335622.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05662 YP_335627.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_335628.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_335629.1 identified by match to protein family HMM PF01039 YP_335630.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_335631.1 identified by match to protein family HMM PF00440 YP_335636.1 identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732 YP_335638.1 identified by match to protein family HMM PF00278; match to protein family HMM PF00355 YP_335640.1 identified by match to protein family HMM PF02373 YP_335645.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_335647.1 identified by match to protein family HMM PF00583 YP_335648.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_335649.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_335651.1 identified by match to protein family HMM TIGR01409 YP_335652.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00970; match to protein family HMM PF03929 YP_335653.1 identified by match to protein family HMM PF02424 YP_335654.1 identified by match to protein family HMM PF00171 YP_335656.1 identified by match to protein family HMM PF00155 YP_335658.1 identified by match to protein family HMM PF03466 YP_335659.1 identified by match to protein family HMM TIGR01552 YP_335660.1 identified by match to protein family HMM PF01266 YP_335661.1 identified by match to protein family HMM PF00440 YP_335662.1 identified by match to protein family HMM PF00614 YP_335664.1 identified by match to protein family HMM PF00455 YP_335665.1 identified by match to protein family HMM TIGR01409 YP_335666.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR01409 YP_335667.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125 YP_335668.1 identified by match to protein family HMM PF00392 YP_335670.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_335671.1 identified by match to protein family HMM PF00107 YP_335673.1 identified by match to protein family HMM PF00892 YP_335674.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_335675.1 identified by match to protein family HMM PF00440 YP_335676.1 identified by match to protein family HMM PF06792 YP_335679.1 identified by match to protein family HMM PF00034; match to protein family HMM PF00127; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR02376 YP_335680.1 identified by match to protein family HMM PF03781 YP_335681.1 identified by match to protein family HMM PF02630 YP_335683.1 identified by match to protein family HMM PF01510 YP_335685.1 OrfA YP_335687.1 identified by match to protein family HMM PF05658; match to protein family HMM PF05662 YP_335689.1 identified by match to protein family HMM PF06812 YP_335690.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_335691.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_335692.1 identified by match to protein family HMM PF05943 YP_335693.1 identified by match to protein family HMM PF05591 YP_335696.1 identified by match to protein family HMM PF07025 YP_335697.1 identified by match to protein family HMM PF05947 YP_335698.1 identified by match to protein family HMM PF06996 YP_335699.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_335700.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_335701.1 identified by match to protein family HMM PF00805 YP_335704.1 identified by match to protein family HMM PF05936 YP_335711.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_335714.1 identified by match to protein family HMM PF01609 YP_335715.1 identified by match to protein family HMM PF00165 YP_335719.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_335720.1 identified by match to protein family HMM PF05932 YP_335724.1 identified by match to protein family HMM PF01464 YP_335727.1 identified by match to protein family HMM TIGR02553 YP_335728.1 identified by match to protein family HMM PF00816 YP_335729.1 identified by match to protein family HMM TIGR02101 YP_335730.1 identified by match to protein family HMM PF03518 YP_335732.1 identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552 YP_335733.1 Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins YP_335734.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401 YP_335735.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403 YP_335736.1 part of a type III secretory system probably involved in invasion into eukaryotic cells YP_335737.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551 YP_335741.1 Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase YP_335743.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 YP_335744.1 identified by match to protein family HMM PF02523; match to protein family HMM PF03958; match to protein family HMM TIGR02511; match to protein family HMM TIGR02568 YP_335745.1 identified by match to protein family HMM PF00263; match to protein family HMM TIGR02516 YP_335746.1 identified by match to protein family HMM PF00165 YP_335748.1 identified by match to protein family HMM TIGR02554 YP_335750.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544 YP_335751.1 identified by match to protein family HMM TIGR02555 YP_335752.1 identified by match to protein family HMM TIGR02499 YP_335755.1 identified by match to protein family HMM PF00486 YP_335758.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF07504 YP_335759.1 identified by match to protein family HMM PF01047 YP_335760.1 identified by match to protein family HMM PF00903 YP_335761.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_335762.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_335763.1 identified by match to protein family HMM PF01070 YP_335769.1 identified by match to protein family HMM PF01810 YP_335770.1 identified by match to protein family HMM PF01037 YP_335772.1 identified by match to protein family HMM PF01384 YP_335775.1 identified by match to protein family HMM PF00501 YP_335776.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_335777.1 identified by match to protein family HMM PF00765 YP_335778.1 identified by match to protein family HMM PF00724 YP_335779.1 identified by match to protein family HMM PF00528 YP_335780.1 identified by match to protein family HMM PF00005 YP_335781.1 identified by match to protein family HMM PF04069; match to protein family HMM TIGR01729 YP_335782.1 catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers YP_335785.1 identified by match to protein family HMM PF00535 YP_335790.1 identified by match to protein family HMM PF00515; match to protein family HMM PF05420; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_335791.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans YP_335792.2 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP) YP_335793.1 identified by match to protein family HMM PF07804; match to protein family HMM PF07805 YP_335794.1 identified by match to protein family HMM PF01381 YP_335797.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_335798.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_335801.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_335807.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 YP_335808.1 identified by match to protein family HMM TIGR02532 YP_335811.1 identified by match to protein family HMM PF00482 YP_335812.1 identified by match to protein family HMM PF00437 YP_335816.1 identified by match to protein family HMM PF00263; match to protein family HMM TIGR02520 YP_335817.1 identified by match to protein family HMM PF00437 YP_335819.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_335820.1 identified by match to protein family HMM PF02518 YP_335826.1 identified by match to protein family HMM PF00165 YP_335834.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403 YP_335835.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response YP_335836.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551 YP_335837.1 identified by match to protein family HMM TIGR02557 YP_335838.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 YP_335839.1 identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404 YP_335840.1 identified by match to protein family HMM TIGR02561 YP_335841.1 identified by match to protein family HMM TIGR02558 YP_335842.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544 YP_335843.1 identified by match to protein family HMM TIGR02560 YP_335844.2 identified by match to protein family HMM TIGR02499 YP_335845.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546 YP_335846.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401 YP_335847.1 identified by match to protein family HMM TIGR02559 YP_335852.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733 YP_335853.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_335854.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_335856.1 identified by match to protein family HMM PF00202; match to protein family HMM PF07690; match to protein family HMM TIGR00709 YP_335859.1 catalyzes the formation of acetate from pyruvate YP_335860.1 identified by match to protein family HMM PF02550 YP_335861.1 identified by match to protein family HMM PF01575 YP_335862.1 identified by match to protein family HMM PF03328 YP_335863.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_335865.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_335867.1 identified by match to protein family HMM PF07690 YP_335868.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_335870.1 identified by match to protein family HMM PF00072 YP_335871.1 identified by match to protein family HMM PF00652 YP_335874.1 identified by match to protein family HMM PF01734 YP_335876.1 identified by match to protein family HMM PF00067; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_335878.1 identified by match to protein family HMM PF07690 YP_335879.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_335884.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00475 YP_335885.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_335886.1 identified by match to protein family HMM PF04216; match to protein family HMM TIGR01562 YP_335887.1 identified by match to protein family HMM TIGR01583 YP_335888.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01582 YP_335890.1 identified by match to protein family HMM PF01568; match to protein family HMM TIGR01553 YP_335891.1 identified by match to protein family HMM PF04879; match to protein family HMM TIGR01409 YP_335892.1 identified by match to protein family HMM PF02698 YP_335893.1 identified by match to protein family HMM TIGR01409 YP_335894.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_335895.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_335896.1 identified by match to protein family HMM PF07673 YP_335898.1 identified by match to protein family HMM PF00296 YP_335899.1 identified by match to protein family HMM PF00497 YP_335900.1 identified by match to protein family HMM PF00583 YP_335901.1 identified by match to protein family HMM PF04952 YP_335903.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_335904.1 identified by match to protein family HMM PF00267 YP_335905.1 identified by match to protein family HMM PF01757 YP_335906.1 identified by match to protein family HMM PF00216 YP_335908.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_335910.1 identified by match to protein family HMM PF01757 YP_335911.1 identified by match to protein family HMM PF00534 YP_335912.1 identified by match to protein family HMM PF01943 YP_335916.1 identified by match to protein family HMM PF01757 YP_335917.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM TIGR01472 YP_335918.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_335919.1 identified by match to protein family HMM PF07883 YP_335920.1 catalyzes the conversion of O-succinylhomoserine into homocysteine YP_335921.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_335922.1 identified by match to protein family HMM PF02674 YP_335923.1 identified by match to protein family HMM PF05036 YP_335924.1 identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499 YP_335925.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_335926.2 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_335927.1 identified by match to protein family HMM PF01555 YP_335928.2 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_335929.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_335930.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_335932.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_335934.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_335935.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_335936.1 identified by match to protein family HMM PF08085 YP_335937.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_335941.1 identified by match to protein family HMM PF01037 YP_335942.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1 YP_335943.1 identified by match to protein family HMM PF07350 YP_335945.1 identified by match to protein family HMM PF00903 YP_335946.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_335947.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_335948.1 identified by match to protein family HMM PF03937 YP_335949.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_335950.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_335951.1 identified by match to protein family HMM PF01127 YP_335952.1 identified by match to protein family HMM PF01127 YP_335953.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_335954.1 catalyzes the oxidation of malate to oxaloacetate YP_335958.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C YP_335959.1 catalyzes the conversion of citrate to isocitrate YP_335960.1 identified by match to protein family HMM PF05860; match to protein family HMM TIGR01901 YP_335961.1 identified by match to protein family HMM PF03865 YP_335963.1 identified by match to protein family HMM PF00034 YP_335965.1 identified by match to protein family HMM PF00264 YP_335970.1 identified by match to protein family HMM PF00082 YP_335971.1 identified by match to protein family HMM PF00528 YP_335972.1 identified by match to protein family HMM PF00528 YP_335974.1 identified by match to protein family HMM PF01547 YP_335975.1 identified by match to protein family HMM PF00005 YP_335976.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_335977.1 acts as a molecular chaperone to fold and export lipase A YP_335979.1 identified by match to protein family HMM PF00561 YP_335980.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01778 YP_335982.1 identified by match to protein family HMM PF01292 YP_335984.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_335985.1 identified by match to protein family HMM PF07883 YP_335987.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_335988.1 identified by match to protein family HMM PF06080 YP_335989.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_335990.1 identified by match to protein family HMM PF02133 YP_335991.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_335992.1 synthesizes RNA primers at the replication forks YP_335993.1 identified by match to protein family HMM PF02637 YP_335994.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_335995.1 identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275 YP_335998.2 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_335999.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_336000.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_336001.1 identified by match to protein family HMM PF00348 YP_336002.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_336003.1 identified by match to protein family HMM PF00355 YP_336004.1 identified by match to protein family HMM PF01609 YP_336005.1 identified by match to protein family HMM PF00581 YP_336006.1 identified by match to protein family HMM PF01738; match to protein family HMM TIGR01409 YP_336008.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_336009.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_336011.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_336013.1 identified by match to protein family HMM PF04463 YP_336015.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_336017.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine YP_336020.1 identified by match to protein family HMM PF01047 YP_336021.1 identified by match to protein family HMM PF02566 YP_336023.1 identified by match to protein family HMM TIGR01840 YP_336024.1 identified by match to protein family HMM PF01569 YP_336025.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_336026.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141 YP_336027.1 identified by match to protein family HMM PF00005 YP_336029.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03459; match to protein family HMM TIGR00637; match to protein family HMM TIGR00638 YP_336030.1 identified by match to protein family HMM PF05235 YP_336031.1 identified by match to protein family HMM PF01361 YP_336032.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336033.1 identified by match to protein family HMM PF00892 YP_336034.1 identified by match to protein family HMM PF00512 YP_336035.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_336036.1 identified by match to protein family HMM PF02581 YP_336037.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922 YP_336039.1 identified by match to protein family HMM PF04073 YP_336040.1 identified by match to protein family HMM PF00478; match to protein family HMM PF01070 YP_336044.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_336046.1 identified by match to protein family HMM PF01810 YP_336047.1 identified by match to protein family HMM PF00190; match to protein family HMM PF07883 YP_336048.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate YP_336049.1 catalyzes the formation of acetyl-CoA from acetalaldehyde YP_336050.1 identified by match to protein family HMM PF00975 YP_336051.1 identified by match to protein family HMM PF01063; match to protein family HMM TIGR01122 YP_336053.1 identified by match to protein family HMM PF00975 YP_336055.1 identified by match to protein family HMM PF05721; match to protein family HMM TIGR01762 YP_336056.1 identified by match to protein family HMM PF00550 YP_336057.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01733 YP_336058.1 identified by match to protein family HMM PF01022 YP_336060.1 identified by match to protein family HMM PF07077 YP_336061.1 identified by match to protein family HMM PF00149 YP_336065.1 identified by match to protein family HMM PF00254 YP_336066.1 identified by match to protein family HMM PF00165 YP_336067.1 identified by match to protein family HMM PF00534 YP_336068.1 identified by match to protein family HMM PF00534 YP_336071.1 identified by match to protein family HMM PF00535 YP_336072.1 identified by match to protein family HMM PF02706 YP_336073.1 identified by match to protein family HMM PF02563 YP_336074.1 identified by match to protein family HMM PF01451 YP_336075.1 identified by match to protein family HMM PF00984; match to protein family HMM PF02558; match to protein family HMM PF03720; match to protein family HMM PF03721 YP_336076.1 identified by match to protein family HMM PF02397 YP_336077.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_336082.1 identified by match to protein family HMM PF02915 YP_336084.1 identified by match to protein family HMM PF01510 YP_336085.1 identified by match to protein family HMM PF04542 YP_336088.1 identified by match to protein family HMM PF04946 YP_336089.1 identified by match to protein family HMM PF04946 YP_336092.1 identified by match to protein family HMM PF03372 YP_336093.1 identified by match to protein family HMM PF05957 YP_336095.1 identified by match to protein family HMM PF01594 YP_336097.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_336098.1 identified by match to protein family HMM PF07690 YP_336100.1 identified by match to protein family HMM PF00107 YP_336101.1 Converts 2,5-dichloro-2,5-cyclohexadiene-1,4-diol to 2,5-dichlorohydroquinone YP_336102.1 identified by match to protein family HMM PF00106 YP_336103.1 identified by match to protein family HMM PF00300 YP_336104.1 identified by match to protein family HMM PF01636 YP_336105.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_336106.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336107.1 identified by match to protein family HMM PF02566 YP_336110.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413 YP_336111.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_336112.1 identified by match to protein family HMM PF01965 YP_336113.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_336114.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_336115.1 identified by match to protein family HMM PF05433 YP_336118.1 identified by match to protein family HMM PF02517 YP_336119.1 identified by match to protein family HMM PF00654 YP_336120.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_336121.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_336122.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_336123.1 identified by match to protein family HMM PF01584 YP_336124.1 identified by match to protein family HMM PF00515; match to protein family HMM PF01739; match to protein family HMM PF07719 YP_336125.1 identified by match to protein family HMM PF01584 YP_336126.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_336127.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_336128.1 identified by match to protein family HMM PF00260 YP_336129.1 identified by match to protein family HMM PF01575 YP_336131.1 identified by match to protein family HMM PF00171 YP_336132.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis YP_336133.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831 YP_336134.1 identified by match to protein family HMM PF04286 YP_336136.1 identified by match to protein family HMM PF00614 YP_336137.1 identified by match to protein family HMM PF01230 YP_336138.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_336139.1 identified by match to protein family HMM PF00355 YP_336140.1 identified by match to protein family HMM PF00866 YP_336141.1 identified by match to protein family HMM PF00355; match to protein family HMM PF00848 YP_336142.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_336143.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336144.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR02534 YP_336145.1 identified by match to protein family HMM PF00775; match to protein family HMM PF04444; match to protein family HMM TIGR02439 YP_336147.1 identified by match to protein family HMM PF02426 YP_336148.1 identified by match to protein family HMM PF03626 YP_336150.1 identified by match to protein family HMM PF00115 YP_336151.1 identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433 YP_336153.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_336154.1 identified by match to protein family HMM PF00165 YP_336155.1 identified by match to protein family HMM PF03466 YP_336156.1 identified by match to protein family HMM PF01370 YP_336157.1 identified by match to protein family HMM PF03466 YP_336158.1 identified by match to protein family HMM PF00866 YP_336159.1 with BenAB catalyzes the formation of 2-hydro-1,2-dihydroxybenzoate from benzoate YP_336160.1 catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol YP_336161.1 identified by match to protein family HMM PF07859 YP_336162.1 identified by match to protein family HMM PF01047 YP_336163.1 identified by match to protein family HMM PF00857 YP_336167.1 identified by match to protein family HMM PF02012 YP_336168.1 identified by match to protein family HMM PF00324 YP_336171.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_336172.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01829 YP_336174.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_336180.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_336183.1 identified by match to protein family HMM PF04972 YP_336186.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_336187.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_336188.1 identified by match to protein family HMM PF01522 YP_336189.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_336190.1 identified by match to protein family HMM PF00529 YP_336191.1 identified by match to protein family HMM PF00005 YP_336192.1 identified by match to protein family HMM PF02687 YP_336193.1 identified by match to protein family HMM PF00582 YP_336194.1 identified by match to protein family HMM PF00440 YP_336195.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_336196.1 identified by match to protein family HMM PF00529 YP_336197.1 identified by match to protein family HMM PF00005; match to protein family HMM PF01061 YP_336198.1 identified by match to protein family HMM PF01061 YP_336199.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_336201.1 identified by match to protein family HMM PF00015 YP_336204.1 identified by match to protein family HMM PF00107 YP_336206.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit YP_336207.1 identified by match to protein family HMM PF00430 YP_336209.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_336210.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0 YP_336212.1 identified by match to protein family HMM TIGR02230 YP_336213.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_336214.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit YP_336215.1 identified by match to protein family HMM PF00561; match to protein family HMM PF07167 YP_336216.1 Catalyses the synthesis of acetylphosphate from acetyl-CoA and inorganic phosphate YP_336218.1 Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation YP_336220.1 identified by match to protein family HMM PF00294 YP_336221.1 identified by match to protein family HMM PF04972 YP_336223.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354 YP_336224.2 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_336226.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_336227.2 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670 YP_336228.1 identified by match to protein family HMM PF01243 YP_336229.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_336230.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336231.1 identified by match to protein family HMM PF00440 YP_336232.1 identified by match to protein family HMM PF00106 YP_336233.1 identified by match to protein family HMM PF00743; match to protein family HMM PF01266 YP_336234.1 identified by match to protein family HMM PF00561 YP_336235.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_336238.1 identified by match to protein family HMM PF00082 YP_336239.1 identified by match to protein family HMM PF01391 YP_336244.1 identified by match to protein family HMM PF00150 YP_336245.1 identified by match to protein family HMM PF02706 YP_336247.1 identified by match to protein family HMM PF02583 YP_336248.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_336249.1 identified by match to protein family HMM PF03265 YP_336253.1 identified by match to protein family HMM PF00149 YP_336256.1 identified by match to protein family HMM PF00596 YP_336257.1 identified by match to protein family HMM PF03167 YP_336258.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue YP_336259.1 identified by match to protein family HMM PF00082 YP_336261.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387 YP_336262.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386 YP_336264.1 identified by match to protein family HMM PF00905 YP_336265.1 identified by match to protein family HMM PF04185; match to protein family HMM TIGR02276 YP_336271.1 identified by match to protein family HMM PF04214 YP_336272.1 identified by match to protein family HMM PF01527; match to protein family HMM TIGR01199 YP_336273.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04820 YP_336275.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04820 YP_336276.1 identified by match to protein family HMM PF00355 YP_336278.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_336287.1 identified by match to protein family HMM PF00535 YP_336289.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_336291.1 identified by match to protein family HMM PF03466 YP_336292.1 identified by match to protein family HMM PF03741 YP_336295.1 identified by match to protein family HMM PF04828 YP_336296.1 identified by match to protein family HMM PF00282 YP_336299.1 identified by match to protein family HMM PF00107 YP_336300.1 identified by match to protein family HMM PF00282 YP_336301.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_336303.1 identified by match to protein family HMM PF00440 YP_336304.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_336305.1 identified by match to protein family HMM PF00106 YP_336306.1 identified by match to protein family HMM PF01039 YP_336307.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_336308.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_336309.1 identified by match to protein family HMM PF00378 YP_336310.1 identified by match to protein family HMM PF05853 YP_336311.1 identified by match to protein family HMM PF00501 YP_336313.1 identified by match to protein family HMM PF00487 YP_336314.1 identified by match to protein family HMM PF00550 YP_336315.1 identified by match to protein family HMM PF02353 YP_336316.1 identified by match to protein family HMM PF00487 YP_336317.1 identified by match to protein family HMM PF04909 YP_336318.1 identified by match to protein family HMM PF00501 YP_336319.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_336320.1 identified by match to protein family HMM PF00561 YP_336321.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052 YP_336323.1 identified by match to protein family HMM PF00665 YP_336324.1 identified by match to protein family HMM PF01527 YP_336325.1 identified by match to protein family HMM PF05344 YP_336326.1 identified by match to protein family HMM PF03865 YP_336327.1 identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901 YP_336328.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_336330.1 identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646 YP_336334.1 PMP70; PMP68; identified by match to protein family HMM PF05717 YP_336335.1 identified by match to protein family HMM PF01527 YP_336338.1 identified by match to protein family HMM PF02065 YP_336339.1 identified by match to protein family HMM PF00528 YP_336340.1 identified by match to protein family HMM PF00528 YP_336341.1 identified by match to protein family HMM PF01547 YP_336342.1 identified by match to protein family HMM PF00005 YP_336344.1 identified by match to protein family HMM PF00532 YP_336347.1 identified by match to protein family HMM PF00239 YP_336348.1 identified by match to protein family HMM PF05344; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_336350.1 identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646 YP_336351.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_336352.1 identified by match to protein family HMM PF06996 YP_336353.1 identified by match to protein family HMM PF05947 YP_336354.1 identified by match to protein family HMM PF07025 YP_336355.1 identified by match to protein family HMM PF05638 YP_336356.1 identified by match to protein family HMM PF05943 YP_336357.1 identified by match to protein family HMM PF05591 YP_336358.1 identified by match to protein family HMM PF06812 YP_336359.1 identified by match to protein family HMM PF00069 YP_336361.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_336363.1 identified by match to protein family HMM PF00691 YP_336364.1 identified by match to protein family HMM PF05936 YP_336367.1 identified by match to protein family HMM PF00498 YP_336371.1 identified by match to protein family HMM PF01494 YP_336372.1 identified by match to protein family HMM PF04345 YP_336375.1 identified by match to protein family HMM PF00106 YP_336376.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336377.1 catalyzes the formation of pyruvate from serine YP_336378.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336379.1 identified by match to protein family HMM PF00581; match to protein family HMM PF01022 YP_336380.1 identified by match to protein family HMM PF00753 YP_336381.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_336382.1 identified by match to protein family HMM PF00266; match to protein family HMM PF00282; match to protein family HMM PF01041; match to protein family HMM PF01212 YP_336383.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_336385.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336387.1 identified by match to protein family HMM PF01070 YP_336388.1 identified by match to protein family HMM PF01557 YP_336390.1 identified by match to protein family HMM PF01614 YP_336391.1 catalyzes the formation of indole-3-acetic acid from indole-3-acetamide YP_336394.1 identified by match to protein family HMM PF00583; match to protein family HMM PF02629 YP_336396.1 identified by match to protein family HMM PF00816 YP_336398.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_336404.1 identified by match to protein family HMM PF00597 YP_336405.1 identified by match to protein family HMM PF03573 YP_336406.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_336407.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_336408.1 identified by match to protein family HMM PF00528 YP_336409.1 identified by match to protein family HMM PF00528 YP_336410.1 identified by match to protein family HMM PF00496 YP_336411.1 identified by match to protein family HMM PF01381; match to protein family HMM PF05899; match to protein family HMM PF07883 YP_336412.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_336415.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336417.1 identified by match to protein family HMM PF03972 YP_336418.1 identified by match to protein family HMM PF03328 YP_336419.1 identified by match to protein family HMM PF02515 YP_336422.1 identified by match to protein family HMM PF00857 YP_336423.1 identified by match to protein family HMM PF07690 YP_336425.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_336428.1 identified by match to protein family HMM PF02515 YP_336429.1 identified by match to protein family HMM PF01614 YP_336430.1 identified by match to protein family HMM PF03328 YP_336431.1 identified by match to protein family HMM PF00267 YP_336432.1 identified by match to protein family HMM PF03972; match to protein family HMM TIGR01409 YP_336435.1 identified by match to protein family HMM TIGR00688 YP_336436.1 identified by match to protein family HMM PF00708 YP_336437.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_336440.1 identified by match to protein family HMM PF00535 YP_336443.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_336444.1 identified by match to protein family HMM PF04055 YP_336448.1 catalyzes the formation of 5-aminovulinate from (S)-4-amino-5-oxopentanoate YP_336450.1 identified by match to protein family HMM PF04328 YP_336451.1 identified by match to protein family HMM PF02554 YP_336452.1 identified by match to protein family HMM PF00561 YP_336453.1 identified by match to protein family HMM PF07171; match to protein family HMM PF07364 YP_336454.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336455.1 identified by match to protein family HMM PF00903 YP_336457.1 identified by match to protein family HMM PF04138 YP_336460.1 identified by match to protein family HMM PF00535 YP_336463.1 identified by match to protein family HMM PF04964 YP_336464.1 identified by match to protein family HMM PF04964 YP_336466.1 identified by match to protein family HMM PF01478 YP_336468.1 identified by match to protein family HMM PF06981 YP_336469.1 identified by match to protein family HMM PF00263; match to protein family HMM PF04972 YP_336470.1 identified by match to protein family HMM PF07811 YP_336471.1 identified by match to protein family HMM PF07811 YP_336472.1 identified by match to protein family HMM PF00072 YP_336473.1 identified by match to protein family HMM PF00437 YP_336474.1 identified by match to protein family HMM PF00482 YP_336475.1 identified by match to protein family HMM PF00482 YP_336476.1 identified by match to protein family HMM PF01037 YP_336478.2 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_336479.1 identified by match to protein family HMM PF01042 YP_336480.1 identified by match to protein family HMM PF00267 YP_336481.1 identified by match to protein family HMM PF00324 YP_336482.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_336483.1 identified by match to protein family HMM PF07171; match to protein family HMM PF07364 YP_336484.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_336485.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336491.1 identified by match to protein family HMM PF00999 YP_336492.1 identified by match to protein family HMM PF01068 YP_336495.1 identified by match to protein family HMM PF02735 YP_336497.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide YP_336500.1 identified by match to protein family HMM PF07043 YP_336502.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_336505.1 identified by match to protein family HMM PF05067 YP_336506.1 identified by match to protein family HMM PF05974 YP_336508.1 identified by match to protein family HMM PF06629 YP_336517.1 identified by match to protein family HMM PF00571 YP_336518.1 identified by match to protein family HMM PF05239 YP_336519.1 identified by match to protein family HMM PF00072 YP_336521.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_336523.1 identified by match to protein family HMM PF00107 YP_336527.1 identified by match to protein family HMM PF00106 YP_336532.1 identified by match to protein family HMM PF00106 YP_336533.1 identified by match to protein family HMM PF04972 YP_336534.1 identified by match to protein family HMM PF00534 YP_336535.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_336536.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_336538.1 identified by match to protein family HMM PF00535 YP_336539.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_336540.1 identified by match to protein family HMM PF00158; match to protein family HMM TIGR01199 YP_336542.1 identified by match to protein family HMM PF01075 YP_336543.1 identified by match to protein family HMM PF00535 YP_336544.1 identified by match to protein family HMM PF02543 YP_336545.1 identified by match to protein family HMM PF01075 YP_336546.1 identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 YP_336547.1 identified by match to protein family HMM PF00106 YP_336549.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00072; match to protein family HMM PF00664; match to protein family HMM PF02518 YP_336550.1 identified by match to protein family HMM PF04972 YP_336551.1 identified by match to protein family HMM PF02666 YP_336553.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_336554.1 identified by match to protein family HMM PF03446 YP_336557.1 identified by match to protein family HMM PF01648 YP_336558.1 identified by match to protein family HMM PF07690 YP_336560.1 identified by match to protein family HMM PF01613 YP_336565.1 E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_336566.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA YP_336567.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_336568.1 identified by match to protein family HMM PF00676 YP_336571.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336574.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00732 YP_336575.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01734; match to protein family HMM PF07992 YP_336576.1 identified by match to protein family HMM PF01258 YP_336578.1 identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849 YP_336579.1 class I; catalyzes the formation of deoxyribonucleotides from their corresponding ribonucleotides YP_336584.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740 YP_336586.1 identified by match to protein family HMM PF00571 YP_336589.1 identified by match to protein family HMM PF00011 YP_336592.1 identified by match to protein family HMM PF00501 YP_336593.1 identified by match to protein family HMM PF00196 YP_336596.1 identified by match to protein family HMM PF00107 YP_336597.1 identified by match to protein family HMM PF02668 YP_336598.1 identified by match to protein family HMM PF05853 YP_336599.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_336600.1 identified by match to protein family HMM PF06821 YP_336601.1 identified by match to protein family HMM PF01323 YP_336602.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_336603.1 identified by match to protein family HMM PF00037 YP_336605.1 identified by match to protein family HMM PF01522 YP_336608.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912 YP_336610.1 identified by match to protein family HMM PF00267 YP_336611.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_336613.1 identified by match to protein family HMM PF00583 YP_336614.1 identified by match to protein family HMM PF00583 YP_336616.1 identified by match to protein family HMM PF01523 YP_336618.1 identified by match to protein family HMM PF01610 YP_336619.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_336620.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_336621.1 identified by match to protein family HMM PF05494 YP_336623.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_336624.1 identified by match to protein family HMM PF00561 YP_336625.1 identified by match to protein family HMM PF01648 YP_336629.1 identified by match to protein family HMM PF02687 YP_336630.1 identified by match to protein family HMM PF00005 YP_336631.1 identified by match to protein family HMM PF00743 YP_336633.1 identified by match to protein family HMM PF00067; match to protein family HMM PF00106 YP_336634.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF01370; match to protein family HMM PF02801 YP_336635.1 identified by match to protein family HMM PF00698 YP_336638.1 identified by match to protein family HMM PF04333 YP_336639.1 identified by match to protein family HMM PF02627 YP_336640.1 identified by match to protein family HMM PF00202 YP_336642.1 similar to ATP-binding component of ABC transporters YP_336643.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine YP_336644.1 similar to periplasmic-binding component of ABC transporters YP_336647.1 identified by match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787 YP_336648.1 identified by match to protein family HMM PF00494 YP_336650.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_336651.1 identified by match to protein family HMM PF04509 YP_336652.1 identified by match to protein family HMM PF00072 YP_336653.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_336654.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_336656.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_336658.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014 YP_336661.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_336664.1 identified by match to protein family HMM PF00589 YP_336666.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_336667.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_336669.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_336670.1 identified by match to protein family HMM PF04264 YP_336672.1 identified by match to protein family HMM PF00440 YP_336673.1 identified by match to protein family HMM PF07080 YP_336674.1 identified by match to protein family HMM PF04952 YP_336675.1 identified by match to protein family HMM PF00180; match to protein family HMM TIGR02089 YP_336676.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336677.1 identified by match to protein family HMM PF04140 YP_336678.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_336680.1 identified by match to protein family HMM PF01734 YP_336681.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_336682.1 converts acetoacetate to acetone and carbon dioxide YP_336683.1 identified by match to protein family HMM PF01569 YP_336686.1 identified by match to protein family HMM PF04954; match to protein family HMM PF08021 YP_336687.1 identified by match to protein family HMM PF03551 YP_336688.1 identified by match to protein family HMM PF00067 YP_336692.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055 YP_336694.1 identified by match to protein family HMM PF01810 YP_336696.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_336697.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_336698.1 identified by match to protein family HMM PF00171 YP_336699.1 identified by match to protein family HMM PF03758 YP_336704.1 identified by match to protein family HMM PF00132 YP_336705.1 identified by match to protein family HMM PF00106 YP_336706.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_336707.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336708.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_336710.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_336711.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_336712.1 Catalyzes the cycloisomerization of cis,cis-muconate YP_336713.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR02427 YP_336714.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425 YP_336715.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_336716.1 identified by match to protein family HMM PF01810 YP_336717.1 identified by match to protein family HMM PF07485 YP_336718.1 identified by match to protein family HMM PF07690 YP_336720.1 identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937 YP_336723.1 identified by match to protein family HMM PF00127 YP_336724.1 member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_336725.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_336727.1 identified by match to protein family HMM PF00816 YP_336728.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_336729.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_336730.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_336733.1 identified by match to protein family HMM PF00165 YP_336734.1 identified by match to protein family HMM PF04185; match to protein family HMM PF05506 YP_336735.1 identified by match to protein family HMM PF00583 YP_336736.1 identified by match to protein family HMM PF00528 YP_336737.1 identified by match to protein family HMM PF00528 YP_336738.1 identified by match to protein family HMM PF01547 YP_336739.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_336743.1 identified by match to protein family HMM PF05488 YP_336744.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_336750.1 identified by match to protein family HMM PF00115 YP_336752.1 identified by match to protein family HMM PF05658; match to protein family HMM PF05662 YP_336754.1 identified by match to protein family HMM PF07437 YP_336755.1 identified by match to protein family HMM PF00419 YP_336756.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_336757.1 identified by match to protein family HMM PF00577 YP_336759.1 identified by match to protein family HMM PF00419 YP_336761.1 identified by match to protein family HMM PF00691 YP_336762.1 identified by match to protein family HMM PF05591 YP_336763.1 identified by match to protein family HMM PF05943 YP_336764.1 identified by match to protein family HMM PF05638 YP_336765.1 identified by match to protein family HMM PF05936 YP_336766.1 identified by match to protein family HMM PF00691 YP_336767.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_336770.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_336771.1 identified by match to protein family HMM PF05488 YP_336772.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_336776.1 identified by match to protein family HMM PF06812 YP_336777.1 identified by match to protein family HMM PF06996 YP_336778.1 identified by match to protein family HMM PF05947 YP_336779.1 identified by match to protein family HMM PF07025 YP_336780.1 identified by match to protein family HMM PF07024 YP_336782.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_336784.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_336787.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_336788.1 identified by match to protein family HMM PF00577 YP_336789.1 member of the periplasmic pilus chaperone family of proteins YP_336790.1 identified by match to protein family HMM PF06551 YP_336791.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_336792.1 identified by match to protein family HMM PF00816 YP_336793.1 identified by match to protein family HMM PF07690 YP_336794.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_336796.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_336797.1 identified by match to protein family HMM PF05651; match to protein family HMM TIGR01199 YP_336801.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00975 YP_336802.1 identified by match to protein family HMM PF07858 YP_336803.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_336804.1 identified by match to protein family HMM PF00891 YP_336805.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336807.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_336809.2 Enables the enzymatic reduction of mercuric ions to elemental mercury YP_336810.1 identified by match to protein family HMM PF00532 YP_336811.1 identified by match to protein family HMM PF02653 YP_336812.1 identified by match to protein family HMM PF00005 YP_336813.1 identified by match to protein family HMM PF00480 YP_336815.1 identified by match to protein family HMM PF00686; match to protein family HMM PF00723 YP_336816.2 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA YP_336818.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_336819.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_336820.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336823.1 identified by match to protein family HMM PF00487 YP_336824.1 identified by match to protein family HMM PF05433 YP_336826.1 identified by match to protein family HMM PF00497 YP_336827.1 identified by match to protein family HMM PF01266 YP_336828.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336830.1 identified by match to protein family HMM PF00106 YP_336835.1 identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180 YP_336836.1 identified by match to protein family HMM PF05141 YP_336838.1 identified by match to protein family HMM PF03241 YP_336839.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_336842.1 identified by match to protein family HMM PF00107 YP_336843.1 identified by match to protein family HMM PF02900 YP_336844.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336846.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_336847.1 identified by match to protein family HMM PF00691 YP_336848.1 identified by match to protein family HMM PF05936 YP_336850.1 identified by match to protein family HMM PF05638 YP_336851.1 identified by match to protein family HMM PF05943 YP_336852.1 identified by match to protein family HMM PF05591 YP_336853.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_336855.1 identified by match to protein family HMM PF07024 YP_336856.1 identified by match to protein family HMM PF07025 YP_336857.1 identified by match to protein family HMM PF05947 YP_336858.1 identified by match to protein family HMM PF06996 YP_336859.1 identified by match to protein family HMM PF06812 YP_336860.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_336861.1 identified by match to protein family HMM PF00805 YP_336862.1 identified by match to protein family HMM PF00805 YP_336867.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336868.1 identified by match to protein family HMM PF02525 YP_336869.1 identified by match to protein family HMM PF00165 YP_336870.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_336871.1 identified by match to protein family HMM PF00903 YP_336875.1 identified by match to protein family HMM PF02133 YP_336876.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_336877.1 identified by match to protein family HMM PF02682 YP_336878.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_336879.1 Catalyzes the formation of malnoyl-CoA, which in turn controls the rate of fatty acid metabolism YP_336880.1 identified by match to protein family HMM PF03746 YP_336881.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336883.1 identified by match to protein family HMM PF01804; penicillin amidase YP_336884.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01249 YP_336890.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_336891.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM TIGR01199; match to protein family HMM TIGR02329 YP_336893.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_336894.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity YP_336895.1 Catalyzes the conversion of citrate to isocitrate YP_336896.1 identified by match to protein family HMM PF04303; match to protein family HMM TIGR02334 YP_336897.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_336900.1 identified by match to protein family HMM PF04055 YP_336901.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203 YP_336902.1 identified by match to protein family HMM PF07690 YP_336903.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336904.1 identified by match to protein family HMM PF07221 YP_336906.1 identified by match to protein family HMM PF02308 YP_336911.1 identified by match to protein family HMM PF00583 YP_336912.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_336914.1 identified by match to protein family HMM PF06742 YP_336915.1 identified by match to protein family HMM PF05359 YP_336917.1 identified by match to protein family HMM PF01663 YP_336918.1 identified by match to protein family HMM PF00903 YP_336919.1 identified by match to protein family HMM PF00494 YP_336926.1 identified by match to protein family HMM PF02322 YP_336927.1 identified by match to protein family HMM PF01654 YP_336928.1 identified by match to protein family HMM PF01212 YP_336929.1 specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_336930.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_336931.1 identified by match to protein family HMM PF03458 YP_336932.1 with HmuTU is involved in the import of hemin YP_336934.1 identified by match to protein family HMM PF01032 YP_336936.1 identified by match to protein family HMM PF01497 YP_336937.1 identified by match to protein family HMM PF05171 YP_336938.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786 YP_336940.1 identified by match to protein family HMM PF03466 YP_336941.1 identified by match to protein family HMM PF00528 YP_336942.1 identified by match to protein family HMM PF00005 YP_336944.1 identified by match to protein family HMM PF00528 YP_336945.1 identified by match to protein family HMM TIGR00725 YP_336946.1 identified by match to protein family HMM PF00267 YP_336947.1 identified by match to protein family HMM PF04198 YP_336948.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_336949.1 identified by match to protein family HMM PF02653 YP_336950.1 identified by match to protein family HMM PF00532 YP_336951.1 identified by match to protein family HMM PF00106 YP_336952.1 identified by match to protein family HMM PF00107 YP_336953.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365 YP_336954.1 identified by match to protein family HMM PF02733 YP_336958.1 identified by match to protein family HMM PF00267 YP_336959.1 identified by match to protein family HMM PF03180 YP_336961.1 identified by match to protein family HMM PF04952 YP_336962.1 identified by match to protein family HMM PF01757 YP_336963.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096 YP_336964.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_336965.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336966.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_336967.1 identified by match to protein family HMM PF00440 YP_336968.1 identified by match to protein family HMM PF01614; match to protein family HMM TIGR02431 YP_336969.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_336971.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229 YP_336972.1 identified by match to protein family HMM PF00891 YP_336975.1 identified by match to protein family HMM PF00355 YP_336978.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_336979.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00700 YP_336981.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_336982.1 identified by match to protein family HMM PF03606 YP_336983.1 identified by match to protein family HMM PF01614 YP_336984.1 identified by match to protein family HMM PF05013 YP_336989.1 catalyzes the formation of selenophosphate from selenide and ATP YP_336992.1 identified by match to protein family HMM PF06516 YP_336995.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_336996.1 identified by match to protein family HMM PF07859 YP_336997.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_336998.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_336999.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_337002.1 identified by match to protein family HMM PF00375 YP_337003.1 identified by match to protein family HMM PF07729 YP_337004.1 identified by match to protein family HMM PF00583 YP_337005.1 identified by match to protein family HMM PF03547 YP_337006.1 identified by match to protein family HMM PF00501 YP_337007.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_337009.1 identified by match to protein family HMM PF00501 YP_337010.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_337012.1 identified by match to protein family HMM PF03807; match to protein family HMM PF07991; match to protein family HMM TIGR00465 YP_337013.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01746 YP_337014.2 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation YP_337015.1 identified by match to protein family HMM PF00202 YP_337019.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801 YP_337020.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_337021.1 identified by match to protein family HMM PF03180 YP_337024.1 identified by match to protein family HMM PF00005 YP_337026.1 identified by match to protein family HMM PF00528 YP_337027.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_337029.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_337030.1 identified by match to protein family HMM PF02754 YP_337031.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273 YP_337032.1 identified by match to protein family HMM PF02589 YP_337033.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_337034.1 identified by match to protein family HMM PF07681 YP_337037.1 identified by match to protein family HMM PF07690 YP_337038.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_337039.1 identified by match to protein family HMM PF02615 YP_337041.1 identified by match to protein family HMM PF00171 YP_337042.1 identified by match to protein family HMM PF00324 YP_337043.1 identified by match to protein family HMM PF00701 YP_337044.1 identified by match to protein family HMM PF05544 YP_337045.1 identified by match to protein family HMM PF01266 YP_337046.1 identified by match to protein family HMM PF00111 YP_337047.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324; match to protein family HMM PF07992 YP_337048.1 identified by match to protein family HMM PF00165 YP_337050.2 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_337051.1 identified by match to protein family HMM PF00903; match to protein family HMM PF01261 YP_337053.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_337054.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_337055.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_337056.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate YP_337057.1 identified by match to protein family HMM PF01547 YP_337058.1 identified by match to protein family HMM PF00005 YP_337059.1 identified by match to protein family HMM PF00528 YP_337060.1 identified by match to protein family HMM PF00528 YP_337061.1 identified by match to protein family HMM PF01663; match to protein family HMM TIGR02335 YP_337062.1 identified by match to protein family HMM PF00171 YP_337065.1 identified by match to protein family HMM PF00376; match to protein family HMM TIGR02044 YP_337068.1 identified by match to protein family HMM PF04378 YP_337069.1 identified by match to protein family HMM PF00248 YP_337070.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_337071.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_337072.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_337075.1 identified by match to protein family HMM PF03239 YP_337077.1 identified by match to protein family HMM PF03928 YP_337080.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_337081.1 identified by match to protein family HMM PF03466 YP_337082.1 identified by match to protein family HMM PF02472 YP_337083.1 identified by match to protein family HMM PF01618 YP_337084.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_337085.1 identified by match to protein family HMM PF04324 YP_337086.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_337087.1 identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754 YP_337088.1 identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723 YP_337089.1 identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645 YP_337090.1 identified by match to protein family HMM PF00892 YP_337091.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_337092.1 identified by match to protein family HMM PF00474 YP_337093.1 identified by match to protein family HMM PF00665 YP_337096.1 identified by match to protein family HMM PF00665; match to protein family HMM PF01145 YP_337097.1 identified by match to protein family HMM PF02371 YP_337098.1 identified by match to protein family HMM PF00149 YP_337099.1 identified by match to protein family HMM PF03150 YP_337100.1 identified by match to protein family HMM PF03009 YP_337101.1 identified by match to protein family HMM PF00665 YP_337103.1 identified by match to protein family HMM PF01476 YP_337107.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_337108.1 identified by match to protein family HMM PF06082 YP_337110.1 identified by match to protein family HMM PF02563 YP_337111.1 identified by match to protein family HMM PF02706 YP_337112.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623 YP_337113.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622 YP_337114.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_337115.1 identified by match to protein family HMM PF00583; match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212 YP_337117.1 identified by match to protein family HMM PF00535 YP_337118.1 identified by match to protein family HMM PF01075 YP_337119.1 identified by match to protein family HMM PF01075 YP_337120.1 identified by match to protein family HMM PF00132 YP_337122.1 identified by match to protein family HMM PF00535 YP_337126.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_337127.1 identified by match to protein family HMM PF02678; match to protein family HMM PF07883 YP_337129.1 identified by match to protein family HMM PF06912 YP_337130.1 identified by match to protein family HMM PF00027; match to protein family HMM PF07992 YP_337131.1 identified by match to protein family HMM PF00165 YP_337132.1 identified by match to protein family HMM PF00165 YP_337133.1 identified by match to protein family HMM PF07690 YP_337135.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_337136.1 identified by match to protein family HMM PF00857 YP_337138.1 identified by match to protein family HMM PF07969 YP_337143.1 identified by match to protein family HMM PF00561 YP_337149.1 identified by match to protein family HMM PF01613 YP_337152.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; match to protein family HMM PF01212 YP_337153.1 identified by match to protein family HMM PF01965 YP_337155.1 identified by match to protein family HMM PF00768 YP_337156.1 identified by match to protein family HMM PF00633; match to protein family HMM PF02811 YP_337159.1 identified by match to protein family HMM PF02321 YP_337160.1 identified by match to protein family HMM PF07731; match to protein family HMM PF07732 YP_337162.1 identified by match to protein family HMM PF04234 YP_337163.1 identified by match to protein family HMM PF05425 YP_337164.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_337165.1 identified by match to protein family HMM PF01266 YP_337166.1 identified by match to protein family HMM PF01266 YP_337168.1 identified by match to protein family HMM PF00528 YP_337169.1 identified by match to protein family HMM PF00528 YP_337170.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_337171.1 identified by match to protein family HMM PF01547 YP_337172.1 identified by match to protein family HMM PF00202 YP_337173.1 identified by match to protein family HMM PF00120 YP_337174.1 identified by match to protein family HMM PF07722 YP_337176.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_337177.1 identified by match to protein family HMM PF00171 YP_337178.1 catalyzes the formation of putrescine from agmatine YP_337180.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_337181.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_337182.1 identified by match to protein family HMM PF05232 YP_337183.1 identified by match to protein family HMM PF02867; match to protein family HMM TIGR02504 YP_337184.1 identified by match to protein family HMM PF00501 YP_337188.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis YP_337189.1 identified by match to protein family HMM PF00753 YP_337190.1 identified by match to protein family HMM PF00441; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_337195.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_337196.1 identified by match to protein family HMM PF00578 YP_337198.1 identified by match to protein family HMM PF03067 YP_337201.1 identified by match to protein family HMM PF00881 YP_337203.1 identified by match to protein family HMM PF04169; match to protein family HMM PF04174 YP_337204.1 identified by match to protein family HMM PF04168 YP_337205.1 identified by match to protein family HMM PF01841 YP_337206.1 identified by match to protein family HMM PF01841 YP_337207.1 identified by match to protein family HMM PF04169 YP_337208.1 identified by match to protein family HMM PF01841 YP_337209.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_337210.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_337212.1 identified by match to protein family HMM PF01965 YP_337213.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_337214.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212 YP_337215.1 identified by match to protein family HMM PF02775 YP_337216.1 identified by match to protein family HMM TIGR02320 YP_337219.1 identified by match to protein family HMM TIGR00374 YP_337220.1 identified by match to protein family HMM PF03171 YP_337221.1 identified by match to protein family HMM PF01066 YP_337222.1 identified by match to protein family HMM PF02550 YP_337225.1 identified by match to protein family HMM PF05591 YP_337226.1 identified by match to protein family HMM PF05943 YP_337227.1 identified by match to protein family HMM PF05638 YP_337229.1 identified by match to protein family HMM PF05947 YP_337231.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_337232.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_337233.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_337239.1 identified by match to protein family HMM PF05936 YP_337240.1 identified by match to protein family HMM PF00691 YP_337241.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_337247.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_337248.1 identified by match to protein family HMM TIGR01556 YP_337250.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_337251.1 identified by match to protein family HMM PF00529 YP_337252.1 identified by match to protein family HMM PF00251 YP_337253.1 identified by match to protein family HMM PF02435 YP_337254.1 identified by match to protein family HMM PF00532 YP_337255.1 identified by match to protein family HMM PF00107 YP_337256.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_337258.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_337259.1 identified by match to protein family HMM PF01244 YP_337260.1 identified by match to protein family HMM PF02830 YP_337261.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_337262.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_337263.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_337266.1 identified by match to protein family HMM PF00355 YP_337267.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_337268.1 identified by match to protein family HMM PF04069 YP_337269.1 identified by match to protein family HMM PF00324 YP_337270.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_337271.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_337272.1 identified by match to protein family HMM PF00884 YP_337273.1 identified by match to protein family HMM PF04069 YP_337274.1 identified by match to protein family HMM PF00267 YP_337275.1 identified by match to protein family HMM PF01546; match to protein family HMM PF04389 YP_337276.1 identified by match to protein family HMM PF07504 YP_337277.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_337278.1 identified by match to protein family HMM PF04069 YP_337280.1 identified by match to protein family HMM PF05853 YP_337281.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_337283.1 identified by match to protein family HMM PF07859 YP_337285.1 identified by match to protein family HMM PF00106 YP_337288.1 identified by match to protein family HMM PF01266 YP_337289.1 identified by match to protein family HMM PF01094 YP_337290.1 identified by match to protein family HMM PF02653 YP_337291.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine YP_337292.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine YP_337293.1 identified by match to protein family HMM PF07673 YP_337295.1 identified by match to protein family HMM PF01551 YP_337296.1 involved in the conversion of chorismate to salicylate YP_337297.1 catalyzes the second reaction in the pyochelin biosynthetic pathway, the conversion of isochorismate to salicylate and pyruvate. YP_337298.1 identified by match to protein family HMM PF00975 YP_337299.1 identified by match to protein family HMM PF00501 YP_337300.1 identified by match to protein family HMM PF00165 YP_337301.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_337302.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733 YP_337303.1 identified by match to protein family HMM PF01408; match to protein family HMM TIGR01761 YP_337304.1 identified by match to protein family HMM PF00005 YP_337305.1 identified by match to protein family HMM PF00005 YP_337306.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_337308.1 identified by match to protein family HMM PF03929 YP_337309.1 identified by match to protein family HMM PF07690 YP_337310.1 identified by match to protein family HMM PF00111 YP_337311.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199 YP_337315.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_337316.1 identified by match to protein family HMM TIGR02594 YP_337320.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_337321.1 identified by match to protein family HMM PF00171 YP_337322.1 identified by match to protein family HMM PF02668 YP_337323.1 identified by match to protein family HMM PF02775 YP_337325.2 identified by match to protein family HMM PF00106; match to protein family HMM PF00561 YP_337326.1 identified by match to protein family HMM PF01145 YP_337327.1 identified by match to protein family HMM PF01957 YP_337328.1 identified by match to protein family HMM PF00165 YP_337329.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_337330.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_337331.1 identified by match to protein family HMM PF00501 YP_337332.1 identified by match to protein family HMM PF03446; match to protein family HMM TIGR01692 YP_337333.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_337334.1 identified by match to protein family HMM PF00378 YP_337335.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_337336.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02687 YP_337337.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_337338.1 identified by match to protein family HMM PF00296 YP_337339.1 identified by match to protein family HMM PF00445 YP_337340.1 catalyzes the formation of glutamate from glutamine YP_337341.1 identified by match to protein family HMM TIGR01409 YP_337342.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_337343.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_337344.2 identified by match to protein family HMM PF01734 YP_337345.1 identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904 YP_337348.1 identified by match to protein family HMM PF01966 YP_337349.1 identified by match to protein family HMM PF06202 YP_337354.1 identified by match to protein family HMM PF00903 YP_337355.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_337356.1 identified by match to protein family HMM PF05988 YP_337358.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_337359.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_337360.1 identified by match to protein family HMM PF01380 YP_337364.1 identified by match to protein family HMM PF00581 YP_337365.1 upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism YP_337369.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_337370.1 identified by match to protein family HMM PF04993 YP_337371.1 identified by match to protein family HMM PF07298 YP_337373.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue YP_337379.1 identified by match to protein family HMM PF00486 YP_337380.1 identified by match to protein family HMM PF02668 YP_337381.1 identified by match to protein family HMM PF01752 YP_337382.1 identified by match to protein family HMM PF00583 YP_337384.1 identified by match to protein family HMM PF06224 YP_337385.1 identified by match to protein family HMM PF07690 YP_337386.3 identified by match to protein family HMM PF01204 YP_337392.1 identified by match to protein family HMM PF00196 YP_337398.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_337399.1 identified by match to protein family HMM PF00486 YP_337400.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR01409 YP_337401.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_337402.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_337405.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_337406.1 identified by match to protein family HMM PF02770; match to protein family HMM PF08028 YP_337409.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_337410.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_337411.1 identified by match to protein family HMM PF06629 YP_337412.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993 YP_337413.1 identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337 YP_337414.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR02305 YP_337415.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR02303 YP_337416.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02299 YP_337418.1 identified by match to protein family HMM PF02900; match to protein family HMM TIGR02298 YP_337419.1 identified by match to protein family HMM PF02962 YP_337420.1 identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312 YP_337421.1 identified by match to protein family HMM PF00165 YP_337422.1 identified by match to protein family HMM PF03328; match to protein family HMM TIGR02311 YP_337423.1 identified by match to protein family HMM PF00107 YP_337424.1 identified by match to protein family HMM PF00267 YP_337425.1 identified by match to protein family HMM PF00005 YP_337426.1 identified by match to protein family HMM PF00528 YP_337427.1 identified by match to protein family HMM PF01547 YP_337428.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_337429.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_337430.1 identified by match to protein family HMM PF03473 YP_337432.1 identified by match to protein family HMM PF00267 YP_337434.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_337437.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_337438.1 identified by match to protein family HMM PF04248 YP_337439.1 identified by match to protein family HMM PF03781 YP_337442.1 identified by match to protein family HMM PF00561 YP_337443.1 identified by match to protein family HMM PF05231 YP_337444.1 identified by match to protein family HMM PF00440 YP_337446.1 identified by match to protein family HMM PF01965 YP_337447.1 identified by match to protein family HMM PF00724 YP_337448.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_337452.1 identified by match to protein family HMM PF00106 YP_337453.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_337455.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_337456.1 identified by match to protein family HMM PF00027 YP_337457.1 activates fatty acids by binding to coenzyme A YP_337459.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_337460.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_337461.1 identified by match to protein family HMM PF00535 YP_337466.1 identified by match to protein family HMM PF07883 YP_337468.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_337469.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_337470.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_337472.1 identified by match to protein family HMM PF03583 YP_337473.1 identified by match to protein family HMM PF00267 YP_337474.1 identified by match to protein family HMM PF03640 YP_337475.1 identified by match to protein family HMM PF00196 YP_337476.1 identified by match to protein family HMM PF00324 YP_337477.1 identified by match to protein family HMM PF03576 YP_337478.1 identified by match to protein family HMM PF00328 YP_337479.1 identified by match to protein family HMM PF04632 YP_337480.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_337482.1 identified by match to protein family HMM PF00267 YP_337483.1 identified by match to protein family HMM PF00903 YP_337484.2 identified by match to protein family HMM PF02133 YP_337485.1 identified by match to protein family HMM PF07905; match to protein family HMM TIGR01199 YP_337486.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_337487.1 identified by match to protein family HMM PF07690 YP_337488.1 identified by match to protein family HMM PF05853 YP_337489.1 identified by match to protein family HMM PF00106 YP_337490.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_337491.1 identified by match to protein family HMM PF00654 YP_337494.1 identified by match to protein family HMM PF03150 YP_337495.1 identified by match to protein family HMM PF04185 YP_337496.1 identified by match to protein family HMM TIGR01409 YP_337498.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_337503.1 identified by match to protein family HMM PF01047 YP_337507.1 identified by match to protein family HMM PF03758 YP_337508.1 identified by match to protein family HMM PF05899 YP_337511.1 catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA YP_337512.1 identified by match to protein family HMM PF00171 YP_337513.1 catalyzes the conversion of ferulic acid to feruloyl-CoA YP_337514.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_337515.1 identified by match to protein family HMM PF00267 YP_337516.1 identified by match to protein family HMM PF07519 YP_337517.1 identified by match to protein family HMM PF01614 YP_337518.1 identified by match to protein family HMM PF00532 YP_337519.1 identified by match to protein family HMM PF00005 YP_337521.1 identified by match to protein family HMM PF02653 YP_337522.1 identified by match to protein family HMM PF04292 YP_337524.1 identified by match to protein family HMM PF04909 YP_337526.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_337527.1 identified by match to protein family HMM PF01557 YP_337528.1 identified by match to protein family HMM PF00106 YP_337531.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662 YP_337532.1 identified by match to protein family HMM PF00816 YP_337534.1 identified by match to protein family HMM PF01614 YP_337536.1 identified by match to protein family HMM PF00563 YP_337537.1 identified by match to protein family HMM PF00440 YP_337539.1 identified by match to protein family HMM PF01094 YP_337540.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_337542.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254 YP_337543.1 identified by match to protein family HMM PF01037 YP_337544.1 identified by match to protein family HMM PF00324 YP_337545.2 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_337547.1 identified by match to protein family HMM PF00583 YP_337549.1 identified by match to protein family HMM PF03171 YP_337553.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_337554.1 identified by match to protein family HMM PF00072 YP_337556.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073 YP_337557.1 identified by match to protein family HMM PF01835 YP_337561.1 identified by match to protein family HMM PF00133 YP_337565.1 identified by match to protein family HMM PF02668 YP_337567.1 identified by match to protein family HMM PF00266 YP_337569.1 identified by match to protein family HMM PF01752 YP_337571.2 associated with the biosynthesis repression of 4-hydroxy-2-alkylquinolines (HAQs) and HAQ-analogs, which act as extracellular signals that interact with quorum sensing YP_337573.1 identified by match to protein family HMM PF01381; match to protein family HMM PF05899; match to protein family HMM PF07883 YP_337577.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_337578.1 identified by match to protein family HMM PF00582 YP_337579.1 identified by match to protein family HMM PF00582 YP_337580.1 identified by match to protein family HMM PF00582 YP_337581.1 identified by match to protein family HMM PF00582 YP_337582.1 identified by match to protein family HMM PF00107 YP_337584.1 identified by match to protein family HMM PF00597 YP_337585.1 identified by match to protein family HMM PF07690 YP_337586.1 identified by match to protein family HMM PF00106 YP_337590.1 identified by match to protein family HMM PF00324 YP_337591.1 identified by match to protein family HMM PF01381 YP_337592.1 identified by match to protein family HMM PF00816 YP_337593.1 identified by match to protein family HMM PF08028 YP_337600.1 identified by match to protein family HMM PF01156 YP_337601.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_337606.1 identified by match to protein family HMM PF01546 YP_337607.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196 YP_337608.1 identified by match to protein family HMM PF03466 YP_337611.1 identified by match to protein family HMM PF00248 YP_337614.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_337615.1 identified by match to protein family HMM PF00196 YP_337616.1 identified by match to protein family HMM PF00171 YP_337617.1 identified by match to protein family HMM PF00202 YP_337618.1 identified by match to protein family HMM PF00324 YP_337620.1 identified by match to protein family HMM PF00165 YP_337621.1 identified by match to protein family HMM PF00267 YP_337622.1 identified by match to protein family HMM PF01810 YP_337623.1 identified by match to protein family HMM PF00583 YP_337624.1 identified by match to protein family HMM PF00724 YP_337625.1 identified by match to protein family HMM PF01022 YP_337626.1 identified by match to protein family HMM PF00267 YP_337627.1 identified by match to protein family HMM PF01272 YP_337630.1 identified by match to protein family HMM PF00571 YP_337631.1 identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505 YP_337633.1 identified by match to protein family HMM PF00765 YP_337635.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_337636.1 identified by match to protein family HMM PF02308 YP_337637.1 identified by match to protein family HMM PF00149 YP_337638.1 identified by match to protein family HMM PF00881 YP_337639.1 identified by match to protein family HMM PF03171 YP_337640.1 identified by match to protein family HMM PF01614 YP_337641.1 identified by match to protein family HMM PF00267 YP_337642.1 identified by match to protein family HMM PF00355 YP_337644.1 identified by match to protein family HMM PF00355 YP_337645.1 member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria YP_337646.1 Orf6; identified by match to protein family HMM PF07883 YP_337647.1 identified by match to protein family HMM PF00561 YP_337648.1 identified by match to protein family HMM PF01614 YP_337649.1 identified by match to protein family HMM PF00106 YP_337650.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_337651.1 catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis YP_337652.1 identified by match to protein family HMM PF00171 YP_337653.1 identified by match to protein family HMM PF00903 YP_337654.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_337655.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_337656.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662 YP_337657.1 identified by match to protein family HMM PF00691; match to protein family HMM PF04355 YP_337659.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_337660.1 identified by match to protein family HMM PF01037 YP_337661.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine YP_337664.1 identified by match to protein family HMM PF00797 YP_337665.1 identified by match to protein family HMM PF06475 YP_337666.1 identified by match to protein family HMM PF02082 YP_337667.1 identified by match to protein family HMM PF07992 YP_337668.1 identified by match to protein family HMM PF03466 YP_337669.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_337670.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_337672.1 identified by match to protein family HMM PF00561 YP_337674.1 identified by match to protein family HMM PF00106 YP_337676.1 identified by match to protein family HMM PF00743 YP_337677.1 identified by match to protein family HMM PF07947 YP_337678.1 identified by match to protein family HMM TIGR01728 YP_337679.1 identified by match to protein family HMM PF00376 YP_337680.1 identified by match to protein family HMM PF00583 YP_337683.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_337684.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_337689.1 identified by match to protein family HMM PF01266 YP_337690.1 identified by match to protein family HMM PF02254; match to protein family HMM PF07885 YP_337691.1 identified by match to protein family HMM PF00561 YP_337692.1 identified by match to protein family HMM PF02627 YP_337693.1 catalyzes the formation of L-proline from L-ornithine YP_337694.1 identified by match to protein family HMM PF00756 YP_337696.1 identified by match to protein family HMM PF00267 YP_337698.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_337702.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_337703.1 identified by match to protein family HMM PF00144 YP_337705.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_337707.1 identified by match to protein family HMM PF00005 YP_337708.1 identified by match to protein family HMM PF00005 YP_337710.1 identified by match to protein family HMM PF00528 YP_337711.1 identified by match to protein family HMM PF00528 YP_337712.1 identified by match to protein family HMM PF00496 YP_337713.1 catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis YP_337718.1 identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646 YP_337720.1 identified by match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_337722.1 identified by match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601 YP_337724.1 identified by match to protein family HMM PF00496 YP_337725.1 identified by match to protein family HMM PF00190; match to protein family HMM PF07883 YP_337726.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_337727.1 identified by match to protein family HMM PF05360 YP_337728.1 identified by match to protein family HMM PF05249 YP_337729.1 identified by match to protein family HMM PF00384; match to protein family HMM TIGR01701 YP_337730.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_337733.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524 YP_337735.1 identified by match to protein family HMM PF00082 YP_337738.1 identified by match to protein family HMM TIGR01409 YP_337739.1 identified by match to protein family HMM PF00732 YP_337740.1 identified by match to protein family HMM PF00034 YP_337741.1 identified by match to protein family HMM PF07681 YP_337742.1 identified by match to protein family HMM PF00267 YP_337744.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_337745.1 identified by match to protein family HMM PF00005 YP_337746.1 identified by match to protein family HMM PF00275 YP_337747.1 identified by match to protein family HMM PF04828 YP_337750.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_337752.1 identified by match to protein family HMM PF02518 YP_337753.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_337754.1 identified by match to protein family HMM PF00199 YP_337756.1 identified by match to protein family HMM PF00165 YP_337758.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_337759.1 involved in polyketide production YP_337760.1 ACP-II; Acyl carrier proteins are involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; this ACP may be involved in the biosynthesis of lipopeptide antibiotics YP_337761.1 involved in polyketide production YP_337762.1 involved in polyketide synthesis YP_337763.1 identified by match to protein family HMM PF01154 YP_337764.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_337765.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_337766.1 identified by match to protein family HMM PF00999 YP_337767.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01212; match to protein family HMM PF02801 YP_337768.1 identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801