-- dump date 20140619_014839 -- class Genbank::CDS -- table cds_note -- id note YP_001057056.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity YP_001057057.1 identified by match to protein family HMM PF00999 YP_001057058.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules YP_001057059.1 identified by match to protein family HMM PF00216 YP_001057060.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_001057061.1 identified by match to protein family HMM PF01464 YP_001057062.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 YP_001057063.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533 YP_001057064.1 identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120 YP_001057067.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532 YP_001057068.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532 YP_001057069.1 identified by match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532 YP_001057070.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001057071.1 identified by match to protein family HMM PF03934 YP_001057072.1 identified by match to protein family HMM PF05134; match to protein family HMM TIGR01709 YP_001057073.1 identified by match to protein family HMM PF04612 YP_001057075.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001057077.1 identified by match to protein family HMM PF01047 YP_001057078.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001057079.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001057081.1 identified by match to protein family HMM PF03788 YP_001057082.1 identified by match to protein family HMM PF04172 YP_001057083.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_001057084.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_001057085.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480 YP_001057086.1 identified by match to protein family HMM PF04347 YP_001057087.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_001057088.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus YP_001057089.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01400 YP_001057090.1 identified by match to protein family HMM PF00376 YP_001057094.1 identified by match to protein family HMM PF00005 YP_001057095.1 identified by match to protein family HMM PF00528 YP_001057096.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001057097.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001057101.1 identified by match to protein family HMM PF01555 YP_001057102.1 identified by match to protein family HMM PF04851 YP_001057106.1 identified by match to protein family HMM PF00165 YP_001057107.1 identified by match to protein family HMM PF00005 YP_001057109.1 identified by match to protein family HMM PF00005 YP_001057110.1 identified by match to protein family HMM PF02653 YP_001057111.1 identified by match to protein family HMM PF02653 YP_001057113.1 identified by match to protein family HMM PF00171 YP_001057116.1 identified by match to protein family HMM PF00106 YP_001057117.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_001057118.1 identified by match to protein family HMM PF03551 YP_001057123.1 identified by match to protein family HMM PF00487 YP_001057124.1 identified by match to protein family HMM PF07848; match to protein family HMM PF08223 YP_001057125.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001057126.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001057129.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001057130.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_001057131.1 identified by match to protein family HMM PF02515 YP_001057139.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_001057140.1 identified by match to protein family HMM PF00199 YP_001057141.1 identified by match to protein family HMM PF01292 YP_001057142.1 negatively supercoils closed circular double-stranded DNA YP_001057143.1 binds the polymerase to DNA and acts as a sliding clamp YP_001057144.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001057145.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_001057147.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_001057148.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_001057151.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001057152.1 identified by match to protein family HMM PF00589 YP_001057160.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_001057166.1 identified by match to protein family HMM PF00583 YP_001057169.1 identified by match to protein family HMM PF07152 YP_001057170.1 identified by match to protein family HMM PF00903 YP_001057171.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589 YP_001057172.2 identified by match to protein family HMM PF00730; match to protein family HMM PF06029 YP_001057173.1 involved in the first step of glutathione biosynthesis YP_001057174.1 identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_001057178.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001057179.1 identified by match to protein family HMM PF01547 YP_001057180.1 identified by match to protein family HMM PF00850 YP_001057181.1 identified by match to protein family HMM PF00795 YP_001057184.1 identified by match to protein family HMM PF01547 YP_001057185.1 identified by match to protein family HMM PF00528 YP_001057186.1 identified by match to protein family HMM PF00528 YP_001057188.1 identified by match to protein family HMM PF00583 YP_001057190.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540 YP_001057194.1 identified by match to protein family HMM PF00383 YP_001057195.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_001057196.1 identified by match to protein family HMM PF01734 YP_001057198.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001057199.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001057200.1 decatenates replicating daughter chromosomes YP_001057201.1 identified by match to protein family HMM PF00085 YP_001057202.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_001057204.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_001057205.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_001057207.1 identified by match to protein family HMM PF01810 YP_001057208.1 identified by match to protein family HMM PF01435 YP_001057209.1 identified by match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_001057211.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001057212.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02954 YP_001057214.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_001057216.1 identified by match to protein family HMM PF01242 YP_001057217.1 identified by match to protein family HMM PF03328 YP_001057219.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_001057220.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_001057221.1 identified by match to protein family HMM PF04093 YP_001057222.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001057223.1 functions in MreBCD complex in some organisms YP_001057224.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_001057225.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001057226.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001057227.1 identified by match to protein family HMM PF03976 YP_001057228.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_001057229.1 identified by match to protein family HMM PF01609 YP_001057230.1 identified by match to protein family HMM PF00107 YP_001057231.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_001057232.1 identified by match to protein family HMM PF01435 YP_001057233.1 identified by match to protein family HMM PF07690 YP_001057234.1 identified by match to protein family HMM PF07021; match to protein family HMM TIGR02081 YP_001057235.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_001057236.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_001057237.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01993 YP_001057238.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_001057241.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001057242.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02954 YP_001057243.1 heat shock protein involved in degradation of misfolded proteins YP_001057244.2 heat shock protein involved in degradation of misfolded proteins YP_001057245.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420 YP_001057246.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_001057248.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_001057249.1 identified by match to protein family HMM PF04340 YP_001057250.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001057251.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_001057252.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001057254.1 identified by match to protein family HMM PF05721 YP_001057256.1 identified by match to protein family HMM PF00248 YP_001057259.1 identified by match to protein family HMM PF00892 YP_001057261.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001057265.2 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_001057267.1 identified by match to protein family HMM PF00171 YP_001057268.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001057269.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_001057270.1 identified by match to protein family HMM PF02120 YP_001057271.1 identified by match to protein family HMM PF02050; match to protein family HMM TIGR02473 YP_001057272.1 identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545 YP_001057273.1 binds to and inhibits the function of flagella specific ATPase FliI YP_001057274.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001057275.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_001057276.1 identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205 YP_001057277.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_001057281.1 identified by match to protein family HMM PF03929 YP_001057282.1 identified by match to protein family HMM PF02625 YP_001057283.1 identified by match to protein family HMM PF00324 YP_001057284.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001057285.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_001057286.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970 YP_001057287.1 identified by match to protein family HMM PF01810 YP_001057288.1 identified by match to protein family HMM PF03372 YP_001057291.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07728 YP_001057292.1 identified by match to protein family HMM PF01266 YP_001057293.1 identified by match to protein family HMM PF01355 YP_001057294.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001057296.1 identified by match to protein family HMM PF00496 YP_001057297.1 identified by match to protein family HMM PF00528 YP_001057298.1 identified by match to protein family HMM PF00528 YP_001057299.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_001057300.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides YP_001057301.1 identified by match to protein family HMM PF07446 YP_001057302.1 identified by match to protein family HMM PF06166 YP_001057303.1 identified by match to protein family HMM PF06149 YP_001057305.1 identified by match to protein family HMM PF03746 YP_001057306.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_001057307.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370 YP_001057308.1 identified by match to protein family HMM PF01047 YP_001057309.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_001057310.1 identified by match to protein family HMM PF01464 YP_001057311.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_001057312.1 identified by match to protein family HMM PF02798 YP_001057313.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases YP_001057316.1 identified by match to protein family HMM PF05130 YP_001057317.1 identified by match to protein family HMM PF04316 YP_001057318.1 required for the assembly of the flagellar basal body P-ring YP_001057319.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_001057320.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_001057321.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production YP_001057322.1 the hook connects flagellar basal body to the flagellar filament YP_001057323.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod YP_001057324.1 makes up the distal portion of the flagellar basal body rod YP_001057325.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Burkholderia thailandensis has 2 copies of this and other flagella genes YP_001057326.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_001057327.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space YP_001057328.1 identified by match to protein family HMM PF07238; match to protein family HMM PF07317 YP_001057329.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_001057330.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes. YP_001057332.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_001057334.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_001057335.1 identified by match to protein family HMM PF02417 YP_001057336.1 identified by match to protein family HMM PF02417 YP_001057339.1 identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686 YP_001057340.1 identified by match to protein family HMM PF06912 YP_001057342.1 identified by match to protein family HMM PF00267 YP_001057349.1 identified by match to protein family HMM PF04966 YP_001057353.1 identified by match to protein family HMM PF01566 YP_001057356.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01424 YP_001057358.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_001057361.1 identified by match to protein family HMM PF00403 YP_001057364.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_001057366.1 identified by match to protein family HMM PF04011 YP_001057367.1 identified by match to protein family HMM PF04536 YP_001057368.1 identified by match to protein family HMM PF04536 YP_001057370.1 identified by match to protein family HMM PF02321 YP_001057371.1 identified by match to protein family HMM TIGR01730 YP_001057372.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_001057375.1 identified by match to protein family HMM PF01382 YP_001057376.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_001057378.1 identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM PF01128; match to protein family HMM TIGR01173 YP_001057380.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_001057381.1 identified by match to protein family HMM TIGR00526 YP_001057383.1 identified by match to protein family HMM PF02636 YP_001057387.1 identified by match to protein family HMM PF00294 YP_001057388.1 identified by match to protein family HMM PF07221 YP_001057389.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001057390.1 identified by match to protein family HMM PF00015 YP_001057392.1 identified by match to protein family HMM PF01758 YP_001057396.1 identified by match to protein family HMM PF00267; match to protein family HMM TIGR03304 YP_001057397.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001057398.1 identified by match to protein family HMM PF03060 YP_001057400.1 identified by match to protein family HMM PF00561 YP_001057401.1 identified by match to protein family HMM PF01037 YP_001057402.1 identified by match to protein family HMM PF00892 YP_001057403.2 identified by match to protein family HMM PF06945 YP_001057405.1 identified by match to protein family HMM PF04073 YP_001057406.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA YP_001057407.1 identified by match to protein family HMM PF02826 YP_001057408.1 identified by match to protein family HMM PF00903 YP_001057409.1 identified by match to protein family HMM PF06821 YP_001057410.1 identified by match to protein family HMM PF00293 YP_001057412.1 identified by match to protein family HMM PF04185; match to protein family HMM PF05506 YP_001057414.1 identified by match to protein family HMM PF01037 YP_001057415.1 identified by match to protein family HMM PF03591 YP_001057416.1 identified by match to protein family HMM PF05437 YP_001057417.1 identified by match to protein family HMM PF00561 YP_001057420.1 identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 YP_001057423.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971 YP_001057426.1 identified by match to protein family HMM PF00450 YP_001057429.1 identified by match to protein family HMM PF01007; match to protein family HMM PF07885 YP_001057431.1 catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_001057432.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831 YP_001057433.1 identified by match to protein family HMM PF00563 YP_001057437.1 identified by match to protein family HMM PF00245 YP_001057438.1 identified by match to protein family HMM PF00245 YP_001057440.1 identified by match to protein family HMM PF03932 YP_001057441.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_001057442.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_001057443.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_001057444.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_001057447.1 similar to protein RSc0270 YP_001057448.1 identified by match to protein family HMM PF00106 YP_001057449.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001057450.1 identified by match to protein family HMM PF00484 YP_001057451.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol YP_001057453.1 identified by match to protein family HMM PF00753 YP_001057454.1 identified by match to protein family HMM PF00005 YP_001057455.1 identified by match to protein family HMM PF00496 YP_001057457.1 identified by match to protein family HMM PF01047 YP_001057459.1 identified by match to protein family HMM PF00106 YP_001057460.1 identified by match to protein family HMM PF00106 YP_001057461.1 identified by match to protein family HMM PF01323 YP_001057462.1 identified by match to protein family HMM PF05036 YP_001057463.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001057466.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082 YP_001057467.1 identified by match to protein family HMM PF02574 YP_001057470.1 identified by match to protein family HMM PF01614 YP_001057471.1 identified by match to protein family HMM PF01557 YP_001057473.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001057475.1 identified by match to protein family HMM PF01734 YP_001057478.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199 YP_001057480.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_001057481.2 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_001057483.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_001057484.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_001057485.1 identified by match to protein family HMM PF00005 YP_001057486.1 identified by match to protein family HMM PF02470 YP_001057488.1 identified by match to protein family HMM PF04892 YP_001057491.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_001057492.1 identified by match to protein family HMM PF01063 YP_001057493.1 identified by match to protein family HMM PF04359 YP_001057494.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_001057496.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_001057497.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001057500.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066 YP_001057502.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001057503.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_001057504.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_001057505.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001057506.1 identified by match to protein family HMM PF02515 YP_001057507.1 identified by match to protein family HMM PF04341 YP_001057508.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake YP_001057509.1 involved in the transport of C4-dicarboxylates across the membrane YP_001057510.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001057511.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001057516.1 identified by match to protein family HMM PF00975 YP_001057517.1 identified by match to protein family HMM PF00583 YP_001057519.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368 YP_001057520.1 identified by match to protein family HMM PF04380 YP_001057521.1 identified by match to protein family HMM PF00543 YP_001057522.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_001057523.1 identified by match to protein family HMM TIGR02049 YP_001057524.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_001057525.1 identified by match to protein family HMM PF03610 YP_001057526.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_001057527.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_001057529.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237 YP_001057530.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_001057531.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_001057532.1 identified by match to protein family HMM PF00581 YP_001057533.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181 YP_001057534.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_001057535.2 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001057536.1 identified by match to protein family HMM PF01661 YP_001057538.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_001057542.1 identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF00691; match to protein family HMM PF02790; match to protein family HMM TIGR02866 YP_001057543.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891 YP_001057545.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_001057547.1 identified by match to protein family HMM PF00510 YP_001057551.1 identified by match to protein family HMM PF02628 YP_001057552.1 converts protoheme IX and farnesyl diphosphate to heme O YP_001057553.1 identified by match to protein family HMM PF02630 YP_001057554.1 identified by match to protein family HMM PF03795 YP_001057555.1 identified by match to protein family HMM PF00015 YP_001057557.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_001057558.1 identified by match to protein family HMM PF04392 YP_001057559.1 identified by match to protein family HMM PF02653 YP_001057560.1 identified by match to protein family HMM PF00005 YP_001057563.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase. YP_001057565.1 identified by match to protein family HMM PF07690 YP_001057566.1 identified by match to protein family HMM PF00487 YP_001057567.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00709 YP_001057569.1 identified by match to protein family HMM PF01061 YP_001057570.1 identified by match to protein family HMM PF00005 YP_001057571.1 identified by match to protein family HMM PF02668 YP_001057572.1 identified by match to protein family HMM PF01209 YP_001057574.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001057576.1 identified by match to protein family HMM PF00501 YP_001057577.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_001057584.1 identified by match to protein family HMM PF00501 YP_001057585.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001057587.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001057588.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_001057589.1 identified by match to protein family HMM PF01380 YP_001057590.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR00830; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417 YP_001057591.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998 YP_001057593.1 identified by match to protein family HMM PF00728; match to protein family HMM PF03173 YP_001057596.1 identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106 YP_001057597.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_001057598.1 identified by match to protein family HMM PF01654 YP_001057600.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_001057603.1 identified by match to protein family HMM TIGR02246 YP_001057604.1 identified by match to protein family HMM PF00682 YP_001057606.1 identified by match to protein family HMM PF00583 YP_001057608.1 identified by match to protein family HMM PF02885 YP_001057609.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879 YP_001057610.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378 YP_001057611.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374 YP_001057613.1 identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262 YP_001057615.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_001057616.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_001057617.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001057618.1 identified by match to protein family HMM PF00037 YP_001057619.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001057620.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001057621.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001057622.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_001057623.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001057624.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein YP_001057625.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07721 YP_001057626.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_001057627.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_001057628.1 identified by match to protein family HMM PF02190 YP_001057629.1 identified by match to protein family HMM PF03668 YP_001057630.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_001057631.1 identified by match to protein family HMM PF00359 YP_001057632.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_001057633.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_001057634.1 identified by match to protein family HMM PF00005 YP_001057635.1 identified by match to protein family HMM PF03968; match to protein family HMM TIGR03002 YP_001057636.1 identified by match to protein family HMM PF06835 YP_001057637.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670 YP_001057638.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_001057639.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254 YP_001057640.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001057641.1 identified by match to protein family HMM PF01810 YP_001057642.1 identified by match to protein family HMM PF00293 YP_001057643.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_001057646.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_001057647.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001057648.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_001057649.1 identified by match to protein family HMM PF01738 YP_001057656.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_001057658.1 identified by match to protein family HMM PF01839; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_001057670.1 identified by match to protein family HMM PF00498 YP_001057671.1 identified by match to protein family HMM PF00069 YP_001057674.1 identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702 YP_001057675.1 identified by match to protein family HMM PF00596 YP_001057678.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001057679.1 identified by match to protein family HMM PF01943 YP_001057680.1 identified by match to protein family HMM PF00534 YP_001057681.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_001057684.1 identified by match to protein family HMM PF00534 YP_001057685.1 identified by match to protein family HMM PF01569 YP_001057688.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001057690.1 identified by match to protein family HMM PF00703 YP_001057693.1 identified by match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001057694.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides YP_001057695.1 identified by match to protein family HMM PF00027 YP_001057698.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03023; match to protein family HMM TIGR03025 YP_001057699.1 identified by match to protein family HMM PF02563 YP_001057700.1 identified by match to protein family HMM PF00534 YP_001057701.1 identified by match to protein family HMM TIGR03304 YP_001057702.1 identified by match to protein family HMM PF07452 YP_001057703.1 identified by match to protein family HMM PF07859 YP_001057705.1 identified by match to protein family HMM PF07690 YP_001057706.1 identified by match to protein family HMM PF01047 YP_001057707.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_001057709.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001057710.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07908; match to protein family HMM PF07969 YP_001057712.1 identified by match to protein family HMM PF01042 YP_001057713.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_001057714.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_001057716.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913 YP_001057717.1 identified by match to protein family HMM PF01230 YP_001057718.1 identified by match to protein family HMM PF06155 YP_001057719.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_001057720.1 identified by match to protein family HMM PF04280 YP_001057721.1 identified by match to protein family HMM PF06843 YP_001057722.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions YP_001057724.1 identified by match to protein family HMM PF05724 YP_001057725.1 identified by match to protein family HMM TIGR02605 YP_001057726.1 identified by match to protein family HMM PF04367 YP_001057727.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001057729.1 converts dATP to dAMP and pyrophosphate YP_001057730.1 identified by match to protein family HMM PF00614 YP_001057732.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001057733.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_001057734.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001057735.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001057736.1 identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129 YP_001057737.1 identified by match to protein family HMM TIGR02664 YP_001057738.1 identified by match to protein family HMM PF03061 YP_001057740.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001057742.1 identified by match to protein family HMM PF00483 YP_001057743.1 identified by match to protein family HMM PF01636 YP_001057744.1 identified by match to protein family HMM PF04453 YP_001057745.1 identified by match to protein family HMM PF00639 YP_001057746.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_001057747.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001057748.1 identified by match to protein family HMM PF00892 YP_001057749.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068 YP_001057750.1 identified by match to protein family HMM PF01863 YP_001057751.1 identified by match to protein family HMM PF01553 YP_001057752.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_001057753.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001057754.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001057755.1 Transfers the fatty acyl group on membrane lipoproteins YP_001057756.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471 YP_001057757.1 identified by match to protein family HMM PF04752 YP_001057758.2 contains unknown N-terminal domain/ metalloprotease C-terminal domain YP_001057761.1 identified by match to protein family HMM PF02562 YP_001057762.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001057764.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001057765.1 identified by match to protein family HMM PF07690 YP_001057766.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001057767.1 identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506 YP_001057768.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001057769.1 identified by match to protein family HMM PF00892 YP_001057770.1 identified by match to protein family HMM PF02655 YP_001057771.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM PF01171; match to protein family HMM TIGR01536 YP_001057772.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001057774.1 identified by match to protein family HMM PF01042 YP_001057776.1 identified by match to protein family HMM PF00230 YP_001057777.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_001057778.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_001057782.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220 YP_001057783.1 identified by match to protein family HMM PF01019 YP_001057787.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001057788.1 identified by match to protein family HMM PF00034 YP_001057791.1 identified by match to protein family HMM PF05425 YP_001057792.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_001057793.1 identified by match to protein family HMM PF04828 YP_001057795.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409 YP_001057796.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF03707 YP_001057797.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966 YP_001057801.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM TIGR00229 YP_001057803.1 identified by match to protein family HMM PF01565 YP_001057805.1 identified by match to protein family HMM PF03466 YP_001057806.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_001057810.1 identified by match to protein family HMM PF00005 YP_001057811.1 identified by match to protein family HMM PF00528 YP_001057815.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_001057817.1 identified by match to protein family HMM PF00156 YP_001057818.1 identified by match to protein family HMM PF00912 YP_001057820.1 identified by match to protein family HMM PF00034 YP_001057822.1 identified by match to protein family HMM PF00115; match to protein family HMM PF00510; match to protein family HMM TIGR02891 YP_001057823.1 identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM TIGR02866 YP_001057824.1 catalyzes the formation of acetate from pyruvate YP_001057825.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_001057828.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_001057829.1 identified by match to protein family HMM PF05947 YP_001057832.1 identified by match to protein family HMM PF01804 YP_001057833.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001057834.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001057835.1 identified by match to protein family HMM PF00174 YP_001057836.1 identified by match to protein family HMM PF00072 YP_001057842.1 identified by match to protein family HMM PF05721 YP_001057844.1 identified by match to protein family HMM PF07755 YP_001057845.1 identified by match to protein family HMM PF02655 YP_001057846.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949 YP_001057847.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001057850.1 identified by match to protein family HMM PF00892 YP_001057851.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_001057852.1 identified by match to protein family HMM PF00196 YP_001057853.1 identified by match to protein family HMM PF00275 YP_001057858.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001057859.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001057860.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001057861.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_001057862.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_001057864.1 catalyzes the interconversion of succinyl-CoA and succinate YP_001057865.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_001057866.1 identified by match to protein family HMM PF03741 YP_001057867.2 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001057868.1 identified by match to protein family HMM PF04932 YP_001057872.1 identified by match to protein family HMM TIGR01352 YP_001057873.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_001057875.1 identified by match to protein family HMM PF01435 YP_001057877.1 identified by match to protein family HMM PF00561 YP_001057879.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195 YP_001057881.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001057882.1 identified by match to protein family HMM PF03591 YP_001057883.1 identified by match to protein family HMM PF05437 YP_001057884.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001057886.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001057887.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_001057888.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001057889.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_001057890.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_001057891.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_001057895.1 identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666 YP_001057896.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001057897.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001057899.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_001057901.1 identified by match to protein family HMM PF04248 YP_001057902.1 identified by match to protein family HMM PF06240 YP_001057903.1 identified by match to protein family HMM PF00440 YP_001057905.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_001057906.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_001057907.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001057909.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_001057910.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_001057912.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001057913.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR02818 YP_001057914.1 identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821 YP_001057915.1 identified by match to protein family HMM PF00950 YP_001057916.1 identified by match to protein family HMM PF00005 YP_001057917.1 identified by match to protein family HMM PF01297 YP_001057918.1 identified by match to protein family HMM PF01475 YP_001057919.1 Converts D-sorbitol to L-sorbose YP_001057920.1 identified by match to protein family HMM PF00294 YP_001057921.1 identified by match to protein family HMM PF08013; match to protein family HMM TIGR02810 YP_001057922.1 identified by match to protein family HMM PF01547 YP_001057924.1 identified by match to protein family HMM PF00528 YP_001057925.1 identified by match to protein family HMM PF00528 YP_001057926.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001057927.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_001057929.1 identified by match to protein family HMM TIGR01409 YP_001057931.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001057932.1 identified by match to protein family HMM PF00144 YP_001057933.1 identified by match to protein family HMM PF07690 YP_001057934.1 identified by match to protein family HMM PF04198 YP_001057935.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_001057936.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125 YP_001057937.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001057938.1 catalyzes the formation of benzaldehyde from benzoylformate YP_001057939.1 identified by match to protein family HMM PF00171 YP_001057940.1 identified by match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM TIGR00745 YP_001057942.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001057943.1 identified by match to protein family HMM PF03301; match to protein family HMM TIGR03036 YP_001057944.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01814 YP_001057945.2 identified by match to protein family HMM PF04199; match to protein family HMM TIGR03035 YP_001057946.1 identified by match to protein family HMM PF01037 YP_001057947.1 identified by match to protein family HMM PF01613 YP_001057948.1 identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_001057950.1 identified by match to protein family HMM PF01904 YP_001057951.1 identified by match to protein family HMM PF02353 YP_001057952.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_001057953.1 identified by match to protein family HMM PF00899 YP_001057954.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_001057955.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_001057956.1 identified by match to protein family HMM PF00892 YP_001057958.1 identified by match to protein family HMM PF01520 YP_001057959.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_001057960.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276 YP_001057961.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_001057962.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_001057963.1 identified by match to protein family HMM PF00501 YP_001057964.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011 YP_001057965.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_001057966.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_001057967.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_001057968.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_001057970.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001057972.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_001057974.1 identified by match to protein family HMM PF00106 YP_001057975.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001057976.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_001057977.1 identified by match to protein family HMM PF03966 YP_001057978.1 Transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_001057980.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_001057981.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_001057984.1 identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937 YP_001057985.1 identified by match to protein family HMM PF00027 YP_001057986.1 identified by match to protein family HMM PF06127 YP_001057987.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate YP_001057990.1 identified by match to protein family HMM PF00563 YP_001057992.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001057994.1 identified by match to protein family HMM PF00285; match to protein family HMM PF00376 YP_001057998.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001057999.1 identified by match to protein family HMM PF00248 YP_001058003.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001058004.1 identified by match to protein family HMM PF02643 YP_001058005.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093 YP_001058006.1 Converts isocitrate to alpha ketoglutarate YP_001058008.1 identified by match to protein family HMM PF07731; match to protein family HMM PF07732 YP_001058009.1 identified by match to protein family HMM PF00313 YP_001058010.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_001058011.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639 YP_001058012.1 identified by match to protein family HMM PF00324 YP_001058014.1 identified by match to protein family HMM PF03988 YP_001058015.1 catalyzes the formation of dUMP from dUTP YP_001058016.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_001058017.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001058018.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme YP_001058019.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_001058020.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_001058021.1 identified by match to protein family HMM PF01189 YP_001058022.1 identified by match to protein family HMM PF00924 YP_001058023.1 identified by match to protein family HMM PF00487 YP_001058025.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_001058026.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_001058027.1 catalyzes the formation of oxaloacetate from L-aspartate YP_001058028.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001058029.1 required for 70S ribosome assembly YP_001058030.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_001058031.1 identified by match to protein family HMM PF00254 YP_001058032.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001058034.1 identified by match to protein family HMM PF02653 YP_001058035.1 identified by match to protein family HMM PF02653 YP_001058036.1 identified by match to protein family HMM PF00005 YP_001058037.1 identified by match to protein family HMM PF00005 YP_001058039.1 identified by match to protein family HMM PF00583 YP_001058040.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_001058041.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose YP_001058042.1 identified by match to protein family HMM PF01370 YP_001058044.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001058045.1 identified by match to protein family HMM PF04234 YP_001058046.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058047.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058048.1 identified by match to protein family HMM PF00561 YP_001058049.1 identified by match to protein family HMM PF03473 YP_001058050.1 identified by match to protein family HMM PF00701 YP_001058051.1 identified by match to protein family HMM PF00596 YP_001058052.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001058055.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058056.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_001058057.1 identified by match to protein family HMM PF06073 YP_001058058.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_001058059.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_001058060.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR02034 YP_001058061.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1 YP_001058062.1 identified by match to protein family HMM PF01903 YP_001058063.1 identified by match to protein family HMM PF03739 YP_001058064.1 identified by match to protein family HMM PF03739 YP_001058065.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_001058066.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_001058068.1 identified by match to protein family HMM PF00034 YP_001058070.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001058071.2 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058073.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001058074.1 identified by match to protein family HMM PF04402 YP_001058075.1 identified by match to protein family HMM PF04543 YP_001058076.1 identified by match to protein family HMM PF05164 YP_001058078.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_001058079.1 identified by match to protein family HMM PF01032 YP_001058080.1 identified by match to protein family HMM PF00005 YP_001058081.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_001058082.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_001058083.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162 YP_001058085.1 identified by match to protein family HMM PF01497 YP_001058086.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase YP_001058087.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_001058088.1 identified by match to protein family HMM PF02283 YP_001058089.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_001058090.1 identified by match to protein family HMM PF07681 YP_001058091.1 identified by match to protein family HMM PF01656 YP_001058092.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_001058093.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001058094.1 identified by match to protein family HMM PF02616 YP_001058096.2 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_001058097.1 identified by match to protein family HMM PF04357 YP_001058101.1 identified by match to protein family HMM PF00891 YP_001058102.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001058104.1 identified by match to protein family HMM PF00691; match to protein family HMM PF05433 YP_001058105.1 identified by match to protein family HMM PF01656 YP_001058106.1 identified by match to protein family HMM PF00080 YP_001058107.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_001058108.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711 YP_001058110.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001058111.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001058112.1 identified by match to protein family HMM PF00577 YP_001058114.1 identified by match to protein family HMM PF05229 YP_001058116.1 identified by match to protein family HMM PF05229 YP_001058118.1 identified by match to protein family HMM PF01209 YP_001058119.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_001058121.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001058122.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis YP_001058123.1 identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_001058125.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001058126.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001058127.1 identified by match to protein family HMM PF00171 YP_001058128.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_001058129.1 identified by match to protein family HMM PF01541 YP_001058133.1 identified by match to protein family HMM PF04339 YP_001058134.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001058135.1 identified by match to protein family HMM PF00543 YP_001058137.1 identified by match to protein family HMM PF00005 YP_001058138.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001058139.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001058140.2 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096 YP_001058142.1 identified by match to protein family HMM PF02678; match to protein family HMM PF07883 YP_001058144.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001058145.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001058148.1 identified by match to protein family HMM PF00528 YP_001058149.1 identified by match to protein family HMM PF00005 YP_001058154.1 identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400 YP_001058157.1 identified by match to protein family HMM PF07690 YP_001058158.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_001058167.1 serine protease inhibitor, inhibits trypsin and other proteases YP_001058168.1 identified by match to protein family HMM PF00768 YP_001058172.1 identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901 YP_001058175.2 identified by match to protein family HMM PF03865 YP_001058180.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001058181.1 identified by match to protein family HMM PF00561 YP_001058183.1 identified by match to protein family HMM PF00301 YP_001058185.1 identified by match to protein family HMM PF00005 YP_001058186.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001058187.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001058191.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058192.1 identified by match to protein family HMM PF05232 YP_001058193.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058195.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001058196.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_001058197.1 identified by match to protein family HMM PF00850 YP_001058199.1 identified by match to protein family HMM PF02417 YP_001058200.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001058201.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_001058202.1 identified by match to protein family HMM PF01042 YP_001058203.1 identified by match to protein family HMM PF00155 YP_001058204.1 identified by match to protein family HMM PF00892 YP_001058206.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001058207.1 molecular chaperone YP_001058208.2 identified by match to protein family HMM PF04345 YP_001058213.1 identified by match to protein family HMM PF00474 YP_001058214.1 identified by match to protein family HMM PF00903; match to protein family HMM PF06983 YP_001058215.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874 YP_001058217.1 identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843 YP_001058219.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07728 YP_001058220.1 identified by match to protein family HMM PF00034 YP_001058221.1 identified by match to protein family HMM PF00034 YP_001058223.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151 YP_001058224.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_001058225.1 Involved in the electron transport chain YP_001058226.1 identified by match to protein family HMM PF00440 YP_001058227.1 identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849 YP_001058230.1 identified by match to protein family HMM PF00723 YP_001058234.1 identified by match to protein family HMM PF01580 YP_001058235.1 identified by match to protein family HMM PF03724 YP_001058237.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_001058242.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001058244.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_001058245.1 identified by match to protein family HMM PF00581 YP_001058246.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_001058247.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203 YP_001058248.1 identified by match to protein family HMM PF00534 YP_001058249.1 identified by match to protein family HMM PF01075 YP_001058251.1 identified by match to protein family HMM PF00534 YP_001058252.1 identified by match to protein family HMM PF01075 YP_001058253.1 identified by match to protein family HMM PF00535 YP_001058257.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001058260.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_001058261.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02957 YP_001058271.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_001058273.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_001058274.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_001058275.1 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_001058276.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_001058277.1 catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP YP_001058278.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_001058279.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001058280.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_001058282.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_001058283.1 identified by match to protein family HMM PF00106 YP_001058284.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_001058287.1 identified by match to protein family HMM PF00107 YP_001058290.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001058291.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001058292.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex YP_001058294.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702 YP_001058295.2 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001058297.1 identified by match to protein family HMM PF03891 YP_001058298.1 identified by match to protein family HMM PF00893 YP_001058300.1 identified by match to protein family HMM PF02687 YP_001058302.1 identified by match to protein family HMM PF01152 YP_001058304.1 identified by match to protein family HMM PF07973 YP_001058305.1 identified by match to protein family HMM PF06041 YP_001058306.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001058307.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001058312.1 Converts glucose to D-glucono-1,5 lactone YP_001058313.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_001058314.1 identified by match to protein family HMM PF00440 YP_001058315.1 identified by match to protein family HMM PF01219 YP_001058316.1 identified by match to protein family HMM PF00534 YP_001058317.1 identified by match to protein family HMM PF00149 YP_001058318.1 identified by match to protein family HMM PF06271 YP_001058321.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001058323.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate YP_001058324.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_001058325.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001058326.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001058327.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_001058328.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_001058329.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_001058330.1 identified by match to protein family HMM PF00484 YP_001058333.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001058334.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_001058335.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR02824 YP_001058336.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001058337.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_001058338.1 Catalyzes the transfer of electrons from NADH to quinone YP_001058339.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_001058340.1 Catalyzes the transfer of electrons from NADH to quinone YP_001058341.1 Catalyzes the transfer of electrons from NADH to quinone YP_001058342.1 Catalyzes the transfer of electrons from NADH to quinone YP_001058343.1 identified by match to protein family HMM PF01512; match to protein family HMM TIGR01959 YP_001058344.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_001058345.1 Catalyzes the transfer of electrons from NADH to quinone YP_001058346.1 Catalyzes the transfer of electrons from NADH to quinone YP_001058347.1 Catalyzes the transfer of electrons from NADH to quinone YP_001058348.1 Catalyzes the transfer of electrons from NADH to quinone YP_001058349.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_001058350.1 Catalyzes the transfer of electrons from NADH to quinone YP_001058351.1 Catalyzes the transfer of electrons from NADH to quinone YP_001058353.1 identified by match to protein family HMM PF00293 YP_001058354.1 identified by match to protein family HMM PF06676 YP_001058355.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_001058356.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001058357.1 identified by match to protein family HMM PF01575 YP_001058358.1 identified by match to protein family HMM PF01575 YP_001058361.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001058362.1 identified by match to protein family HMM PF01636 YP_001058363.1 identified by match to protein family HMM PF00300 YP_001058364.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001058366.1 identified by match to protein family HMM PF02798 YP_001058367.1 catalyzes the transfer of an amino moiety YP_001058369.1 identified by match to protein family HMM PF03883 YP_001058370.1 identified by match to protein family HMM PF00246 YP_001058373.1 identified by match to protein family HMM PF00196 YP_001058377.1 identified by match to protein family HMM PF00557 YP_001058379.1 identified by match to protein family HMM PF00165 YP_001058380.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_001058385.1 identified by match to protein family HMM TIGR01409; match to protein family HMM TIGR01728 YP_001058388.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_001058393.1 identified by match to protein family HMM PF00034 YP_001058395.1 identified by match to protein family HMM PF00116 YP_001058396.1 identified by match to protein family HMM PF00115 YP_001058397.1 identified by match to protein family HMM PF00034 YP_001058400.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_001058401.1 identified by match to protein family HMM PF00578 YP_001058402.1 identified by match to protein family HMM PF01113; match to protein family HMM PF01370 YP_001058405.1 identified by match to protein family HMM PF00873 YP_001058406.1 identified by match to protein family HMM PF00873 YP_001058407.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_001058409.1 identified by match to protein family HMM PF01614 YP_001058415.1 identified by match to protein family HMM PF02082 YP_001058416.1 identified by match to protein family HMM PF01370; match to protein family HMM PF05368 YP_001058417.1 identified by match to protein family HMM PF05995 YP_001058418.1 identified by match to protein family HMM PF01037 YP_001058419.1 identified by match to protein family HMM PF00005 YP_001058420.1 identified by match to protein family HMM PF00528 YP_001058421.1 identified by match to protein family HMM PF01547 YP_001058424.1 identified by match to protein family HMM PF00324 YP_001058426.1 identified by match to protein family HMM PF05976 YP_001058428.1 identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450 YP_001058429.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609 YP_001058431.1 identified by match to protein family HMM PF00472 YP_001058432.1 identified by match to protein family HMM PF00563 YP_001058435.1 identified by match to protein family HMM PF00892 YP_001058437.1 similar to rickettsia 17 kDa surface antigen YP_001058438.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_001058440.1 identified by match to protein family HMM TIGR02953 YP_001058441.1 identified by match to protein family HMM PF06764 YP_001058443.1 identified by match to protein family HMM PF00174 YP_001058445.1 identified by match to protein family HMM PF00892 YP_001058447.1 identified by match to protein family HMM PF07690 YP_001058448.1 identified by match to protein family HMM PF00149 YP_001058449.1 identified by match to protein family HMM PF00005 YP_001058451.1 identified by match to protein family HMM PF00528 YP_001058454.1 identified by match to protein family HMM PF00528 YP_001058455.1 identified by match to protein family HMM PF01547 YP_001058456.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001058461.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001058464.1 identified by match to protein family HMM PF07040 YP_001058466.1 identified by match to protein family HMM PF04299 YP_001058467.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001058468.1 identified by match to protein family HMM PF01037 YP_001058470.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_001058471.1 identified by match to protein family HMM PF03055 YP_001058473.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058474.1 identified by match to protein family HMM PF00106 YP_001058477.1 identified by match to protein family HMM PF06073 YP_001058478.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_001058480.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001058483.1 identified by match to protein family HMM PF00011 YP_001058484.1 identified by match to protein family HMM PF00011 YP_001058489.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_001058490.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_001058491.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058492.1 identified by match to protein family HMM PF03817 YP_001058493.1 identified by match to protein family HMM PF03818 YP_001058496.1 acyl carrier protein of malonate decarboxylase YP_001058497.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A YP_001058498.1 identified by match to protein family HMM PF06833 YP_001058499.1 catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein YP_001058500.1 identified by match to protein family HMM PF01874 YP_001058504.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_001058505.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001058507.1 identified by match to protein family HMM PF02694 YP_001058508.1 3'-5' exonuclease of DNA polymerase III YP_001058509.1 identified by match to protein family HMM PF00075 YP_001058511.1 identified by match to protein family HMM PF00753 YP_001058512.1 identified by match to protein family HMM PF01464; match to protein family HMM PF01476; match to protein family HMM PF06474 YP_001058513.1 identified by match to protein family HMM PF07690 YP_001058516.1 identified by match to protein family HMM PF00165 YP_001058518.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001058519.1 identified by match to protein family HMM PF01810 YP_001058520.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_001058521.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001058523.1 identified by match to protein family HMM PF01985 YP_001058524.1 identified by match to protein family HMM PF01728 YP_001058525.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_001058526.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_001058527.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_001058528.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975 YP_001058529.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_001058530.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_001058531.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_001058532.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_001058533.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154 YP_001058534.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR02966 YP_001058535.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_001058536.1 identified by match to protein family HMM PF02541 YP_001058544.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249 YP_001058549.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001058551.1 identified by match to protein family HMM PF00501 YP_001058553.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_001058554.1 identified by match to protein family HMM PF01263 YP_001058555.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_001058565.1 identified by match to protein family HMM PF01609 YP_001058572.1 identified by match to protein family HMM PF05488 YP_001058573.1 identified by match to protein family HMM PF02409; match to protein family HMM PF05583; match to protein family HMM TIGR00027 YP_001058574.2 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001058580.1 identified by match to protein family HMM PF00128 YP_001058581.1 identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217 YP_001058582.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402 YP_001058583.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100 YP_001058584.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_001058585.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; match to protein family HMM TIGR02457 YP_001058586.1 identified by match to protein family HMM PF00128 YP_001058589.1 identified by match to protein family HMM PF00041; match to protein family HMM TIGR01840 YP_001058596.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058598.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001058601.1 identified by match to protein family HMM PF05666 YP_001058604.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001058606.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662 YP_001058607.1 identified by match to protein family HMM PF00691 YP_001058608.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001058609.1 identified by match to protein family HMM PF00816 YP_001058613.1 identified by match to protein family HMM PF00652; match to protein family HMM PF01344 YP_001058616.1 identified by match to protein family HMM PF05947 YP_001058618.1 identified by match to protein family HMM PF05488 YP_001058621.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001058626.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001058631.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001058636.1 identified by match to protein family HMM PF00665 YP_001058644.1 identified by match to protein family HMM PF04909 YP_001058645.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001058647.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058652.1 identified by match to protein family HMM PF05229 YP_001058653.1 identified by match to protein family HMM PF05229 YP_001058655.1 identified by match to protein family HMM PF00577 YP_001058656.1 identified by match to protein family HMM PF05229 YP_001058658.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001058659.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545 YP_001058662.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001058663.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001058665.1 identified by match to protein family HMM PF00529 YP_001058667.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_001058668.1 identified by match to protein family HMM PF04185 YP_001058669.1 identified by match to protein family HMM PF03150 YP_001058671.1 identified by match to protein family HMM PF00933 YP_001058673.1 identified by match to protein family HMM PF00293 YP_001058674.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001058676.1 identified by match to protein family HMM PF02515 YP_001058678.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001058679.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058680.1 identified by match to protein family HMM PF06779; match to protein family HMM PF07690 YP_001058681.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_001058684.1 identified by match to protein family HMM PF00293 YP_001058685.1 identified by match to protein family HMM PF01906 YP_001058687.1 identified by match to protein family HMM PF00465 YP_001058689.1 identified by match to protein family HMM PF03061 YP_001058690.1 identified by match to protein family HMM PF02653 YP_001058691.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02653 YP_001058692.1 identified by match to protein family HMM PF00005 YP_001058693.1 identified by match to protein family HMM PF06845 YP_001058694.1 identified by match to protein family HMM PF01261 YP_001058695.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_001058696.1 identified by match to protein family HMM PF00294 YP_001058697.1 identified by match to protein family HMM PF00005 YP_001058698.1 identified by match to protein family HMM PF02653 YP_001058700.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001058701.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_001058702.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_001058703.1 identified by match to protein family HMM PF01206 YP_001058705.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001058706.1 identified by match to protein family HMM PF01476 YP_001058707.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF05226 YP_001058709.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_001058710.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001058711.1 identified by match to protein family HMM PF00580 YP_001058712.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_001058713.1 identified by match to protein family HMM PF07690 YP_001058714.1 identified by match to protein family HMM PF00015 YP_001058716.1 identified by match to protein family HMM PF00529 YP_001058717.1 identified by match to protein family HMM PF07869 YP_001058718.1 identified by match to protein family HMM PF04632 YP_001058719.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001058720.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058722.1 identified by match to protein family HMM PF00149 YP_001058723.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_001058725.1 identified by match to protein family HMM PF00258; match to protein family HMM PF03358 YP_001058726.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_001058728.1 identified by match to protein family HMM PF00571 YP_001058729.1 identified by match to protein family HMM PF01553; match to protein family HMM PF07690 YP_001058730.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001058732.1 identified by match to protein family HMM PF01266; match to protein family HMM PF05187 YP_001058733.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001058734.1 identified by match to protein family HMM PF03061 YP_001058739.1 identified by match to protein family HMM PF00196 YP_001058740.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_001058741.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_001058742.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001058743.1 identified by match to protein family HMM PF01522 YP_001058744.1 identified by match to protein family HMM PF07366 YP_001058745.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058747.1 identified by match to protein family HMM PF07992 YP_001058748.1 identified by match to protein family HMM PF00561 YP_001058749.1 identified by match to protein family HMM PF01042 YP_001058750.1 identified by match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_001058752.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001058753.1 identified by match to protein family HMM PF00707; match to protein family HMM PF05198 YP_001058754.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_001058755.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001058756.3 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001058757.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001058758.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_001058759.1 identified by match to protein family HMM PF00376 YP_001058760.1 identified by match to protein family HMM PF05665 YP_001058761.1 identified by match to protein family HMM PF01757 YP_001058766.1 identified by match to protein family HMM PF01609 YP_001058767.1 identified by match to protein family HMM PF03992 YP_001058770.1 identified by match to protein family HMM PF02698 YP_001058774.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058775.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_001058776.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001058777.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_001058778.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001058779.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_001058780.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_001058781.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_001058782.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001058783.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR00998 YP_001058784.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001058785.1 identified by match to protein family HMM PF01047 YP_001058787.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_001058788.1 identified by match to protein family HMM PF01609 YP_001058789.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_001058790.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_001058791.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_001058792.1 identified by match to protein family HMM PF03969 YP_001058803.1 identified by match to protein family HMM PF04964 YP_001058804.1 identified by match to protein family HMM PF01478 YP_001058805.1 identified by match to protein family HMM PF07811 YP_001058806.1 identified by match to protein family HMM PF06981 YP_001058807.1 identified by match to protein family HMM PF00263 YP_001058809.1 identified by match to protein family HMM PF00437 YP_001058810.1 identified by match to protein family HMM PF00482 YP_001058811.1 identified by match to protein family HMM PF00482 YP_001058812.1 identified by match to protein family HMM PF07719 YP_001058815.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001058817.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_001058821.1 identified by match to protein family HMM PF00501 YP_001058823.1 identified by match to protein family HMM PF00440 YP_001058824.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001058826.1 identified by match to protein family HMM PF00583 YP_001058828.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740 YP_001058831.1 identified by match to protein family HMM PF04185 YP_001058833.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001058835.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_001058836.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_001058838.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510 YP_001058840.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_001058841.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001058842.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408 YP_001058844.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001058845.1 identified by match to protein family HMM PF00497 YP_001058846.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_001058847.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_001058848.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_001058849.1 identified by match to protein family HMM PF00293 YP_001058850.1 identified by match to protein family HMM PF03928 YP_001058851.1 identified by match to protein family HMM PF00893 YP_001058852.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_001058857.1 catalyzes the release of sulfite from alkanesulfonates YP_001058858.1 identified by match to protein family HMM PF00528 YP_001058859.1 identified by match to protein family HMM PF00005 YP_001058860.1 identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638 YP_001058864.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742 YP_001058867.1 identified by match to protein family HMM PF00375 YP_001058869.1 identified by match to protein family HMM PF01638 YP_001058870.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_001058871.1 identified by match to protein family HMM PF00248 YP_001058872.1 identified by match to protein family HMM PF03773 YP_001058874.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR01291 YP_001058875.1 involved in the export of lipooligosaccharides during nodulation YP_001058876.1 identified by match to protein family HMM PF00582 YP_001058880.1 Represses a number of genes involved in the response to DNA damage YP_001058882.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971 YP_001058883.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139 YP_001058884.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140 YP_001058885.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR00968 YP_001058886.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058888.1 identified by match to protein family HMM PF00532 YP_001058890.1 identified by match to protein family HMM PF00005 YP_001058891.1 identified by match to protein family HMM PF02653 YP_001058892.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001058893.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_001058894.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001058896.1 identified by match to protein family HMM PF06798 YP_001058897.1 identified by match to protein family HMM PF04285 YP_001058898.1 identified by match to protein family HMM PF04293 YP_001058900.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883 YP_001058903.1 identified by match to protein family HMM PF00005 YP_001058904.1 identified by match to protein family HMM PF00528 YP_001058905.1 identified by match to protein family HMM PF04964 YP_001058906.1 identified by match to protein family HMM PF01478 YP_001058907.1 identified by match to protein family HMM PF06981 YP_001058908.1 identified by match to protein family HMM PF00263 YP_001058911.1 identified by match to protein family HMM PF00437 YP_001058912.1 identified by match to protein family HMM PF00482 YP_001058913.1 identified by match to protein family HMM PF00482 YP_001058914.1 identified by match to protein family HMM PF07719; match to protein family HMM PF07721 YP_001058915.1 identified by match to protein family HMM PF07811 YP_001058916.1 identified by match to protein family HMM PF07811 YP_001058918.1 identified by match to protein family HMM PF00497 YP_001058920.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001058921.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001058922.1 identified by match to protein family HMM PF01551 YP_001058923.1 identified by match to protein family HMM PF00440 YP_001058924.1 MexX; AmrA; involved in resistance to antibiotics; periplasmic membrane fusion protein; functions along with MexY and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery YP_001058925.1 MexY; AmrB; involved in resistance to antibiotics; inner membrane protein; belongs to RND (resistance, nodulation, cell division) family of transporters; functions along with MexX and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery YP_001058926.2 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001058931.1 identified by match to protein family HMM PF00419 YP_001058932.1 identified by match to protein family HMM PF00577 YP_001058933.1 identified by match to protein family HMM PF00345 YP_001058935.1 identified by match to protein family HMM PF00005 YP_001058937.1 identified by match to protein family HMM PF00733 YP_001058941.1 identified by match to protein family HMM PF00165 YP_001058942.1 identified by match to protein family HMM PF00532 YP_001058943.1 identified by match to protein family HMM PF00005 YP_001058944.1 identified by match to protein family HMM PF02653 YP_001058946.1 identified by match to protein family HMM PF00107 YP_001058947.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_001058948.1 identified by match to protein family HMM PF00106 YP_001058952.1 RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease YP_001058953.1 identified by match to protein family HMM PF03621 YP_001058954.1 identified by match to protein family HMM PF02668 YP_001058955.1 identified by match to protein family HMM PF00005 YP_001058956.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome YP_001058958.1 identified by match to protein family HMM PF01497 YP_001058961.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01194 YP_001058962.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_001058963.2 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001058965.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_001058967.1 identified by match to protein family HMM PF01656; match to protein family HMM PF07685 YP_001058968.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_001058969.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3 YP_001058971.1 identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802 YP_001058972.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475 YP_001058973.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism YP_001058975.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07726; match to protein family HMM PF07728 YP_001058977.1 identified by match to protein family HMM PF02230 YP_001058981.1 identified by match to protein family HMM PF02839 YP_001058982.1 identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466 YP_001058983.1 catalyzes the formation of precorrin-3 from precorrin-2 YP_001058984.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate YP_001058985.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02435 YP_001058987.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469 YP_001058988.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_001058989.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_001058990.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_001058991.1 identified by match to protein family HMM PF02638 YP_001058992.1 identified by match to protein family HMM PF07690 YP_001058993.1 identified by match to protein family HMM PF01047 YP_001058994.1 identified by match to protein family HMM PF01094 YP_001058995.1 identified by match to protein family HMM PF01047 YP_001058996.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_001058997.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001058998.1 identified by match to protein family HMM PF03928 YP_001058999.1 identified by match to protein family HMM PF00106 YP_001059001.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_001059002.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway YP_001059003.1 catalyzes the degradation of arginine to citruline and ammonia YP_001059004.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905 YP_001059008.1 identified by match to protein family HMM PF00528 YP_001059009.1 identified by match to protein family HMM PF00005 YP_001059010.1 identified by match to protein family HMM PF00528 YP_001059011.1 identified by match to protein family HMM PF04069 YP_001059014.1 identified by match to protein family HMM PF07690 YP_001059015.1 activates fatty acids by binding to coenzyme A YP_001059018.1 identified by match to protein family HMM PF00015 YP_001059019.1 identified by match to protein family HMM PF01584 YP_001059020.1 identified by match to protein family HMM PF00892 YP_001059021.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_001059023.1 identified by match to protein family HMM PF00267; match to protein family HMM TIGR03304 YP_001059025.2 identified by match to protein family HMM PF00550; match to protein family HMM PF00975 YP_001059027.1 identified by match to protein family HMM PF02373 YP_001059028.1 identified by match to protein family HMM PF00155 YP_001059030.1 identified by match to protein family HMM PF00551 YP_001059031.1 identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032 YP_001059032.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838 YP_001059033.1 identified by match to protein family HMM PF00288 YP_001059034.1 identified by match to protein family HMM PF07690 YP_001059036.1 identified by match to protein family HMM PF00291 YP_001059037.1 identified by match to protein family HMM PF00206; match to protein family HMM PF02222; match to protein family HMM PF02655 YP_001059038.2 identified by match to protein family HMM PF00202; match to protein family HMM PF01212 YP_001059039.1 identified by match to protein family HMM PF00583 YP_001059040.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001059042.1 identified by match to protein family HMM PF02543 YP_001059043.1 identified by match to protein family HMM PF01804 YP_001059049.1 identified by match to protein family HMM PF01764 YP_001059054.2 identified by match to protein family HMM PF00563 YP_001059056.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_001059057.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545 YP_001059062.1 identified by match to protein family HMM PF05658; match to protein family HMM PF05662; match to protein family HMM TIGR03304 YP_001059065.1 identified by match to protein family HMM PF00419 YP_001059066.1 identified by match to protein family HMM PF00577 YP_001059067.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_001059068.1 identified by match to protein family HMM PF00419 YP_001059074.1 identified by match to protein family HMM TIGR01840 YP_001059078.1 identified by match to protein family HMM PF00465 YP_001059083.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820 YP_001059084.1 identified by match to protein family HMM PF00999 YP_001059085.1 identified by match to protein family HMM PF00355 YP_001059088.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_001059090.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001059091.1 identified by match to protein family HMM PF01061 YP_001059092.1 identified by match to protein family HMM PF00005 YP_001059093.1 identified by match to protein family HMM PF02424 YP_001059095.1 reduces nitrous oxide to nitrogen YP_001059096.1 identified by match to protein family HMM PF05048 YP_001059097.2 identified by match to protein family HMM PF00005 YP_001059099.1 identified by match to protein family HMM PF05573 YP_001059102.1 identified by match to protein family HMM PF00034 YP_001059103.1 identified by match to protein family HMM PF04205 YP_001059105.1 identified by match to protein family HMM PF00804; match to protein family HMM PF00924 YP_001059111.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_001059112.1 identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383 YP_001059113.1 identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106 YP_001059115.1 identified by match to protein family HMM PF01210; match to protein family HMM PF01408; match to protein family HMM PF02254; match to protein family HMM PF03435 YP_001059120.1 identified by match to protein family HMM PF01037 YP_001059121.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01733; match to protein family HMM TIGR01746 YP_001059128.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001059129.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001059130.1 identified by match to protein family HMM PF07690 YP_001059131.1 identified by match to protein family HMM PF00294 YP_001059132.1 identified by match to protein family HMM PF01261 YP_001059134.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001059135.1 identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698 YP_001059136.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00654 YP_001059137.1 identified by match to protein family HMM PF00440 YP_001059138.1 identified by match to protein family HMM TIGR01730 YP_001059139.1 identified by match to protein family HMM PF00873 YP_001059140.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001059142.1 identified by match to protein family HMM PF00376; match to protein family HMM PF05583 YP_001059145.2 identified by match to protein family HMM PF00550; match to protein family HMM PF00975; Non-ribosomal peptide synthetase modules and related proteins YP_001059146.1 identified by match to protein family HMM PF00155; match to protein family HMM PF01212 YP_001059147.1 identified by match to protein family HMM PF07690 YP_001059148.1 identified by match to protein family HMM PF01804 YP_001059150.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF07728 YP_001059151.2 identified by match to protein family HMM PF00753 YP_001059152.1 identified by match to protein family HMM PF04273; match to protein family HMM PF07992; match to protein family HMM TIGR01244 YP_001059153.1 identified by match to protein family HMM PF01925 YP_001059155.1 identified by match to protein family HMM PF00528 YP_001059156.1 identified by match to protein family HMM PF00528 YP_001059157.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_001059158.1 identified by match to protein family HMM PF01547 YP_001059159.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_001059161.1 identified by match to protein family HMM PF06945 YP_001059162.1 identified by match to protein family HMM PF03922; match to protein family HMM TIGR03304 YP_001059163.1 identified by match to protein family HMM PF03060 YP_001059164.1 identified by match to protein family HMM PF00171 YP_001059168.1 identified by match to protein family HMM PF00665 YP_001059169.1 identified by match to protein family HMM PF01527 YP_001059173.1 identified by match to protein family HMM PF01381 YP_001059177.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001059179.1 identified by match to protein family HMM TIGR01710 YP_001059181.1 identified by match to protein family HMM PF01527 YP_001059185.1 identified by match to protein family HMM PF00005 YP_001059186.1 identified by match to protein family HMM PF05170 YP_001059187.1 identified by match to protein family HMM PF00005 YP_001059188.1 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245 YP_001059192.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_001059193.1 catalyzes the formation of L-homocysteine from cystathionine YP_001059195.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA YP_001059196.1 identified by match to protein family HMM PF00294 YP_001059197.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_001059198.1 identified by match to protein family HMM PF05233; match to protein family HMM PF07879; match to protein family HMM TIGR01848 YP_001059199.1 catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis YP_001059200.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_001059201.1 identified by match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01838 YP_001059202.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_001059203.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_001059206.1 identified by match to protein family HMM PF04325 YP_001059209.1 identified by match to protein family HMM PF00575 YP_001059210.1 identified by match to protein family HMM PF02705 YP_001059212.1 identified by match to protein family HMM PF00156 YP_001059213.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001059214.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_001059216.1 identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932 YP_001059217.1 identified by match to protein family HMM PF01145; match to protein family HMM TIGR01933 YP_001059218.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231 YP_001059219.1 Stimulates the elongation of poly(A) tails YP_001059220.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001059224.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001059225.2 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_001059227.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_001059228.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_001059229.1 identified by match to protein family HMM PF01027 YP_001059230.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_001059231.1 identified by match to protein family HMM PF03372 YP_001059233.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses YP_001059234.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_001059235.1 identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080 YP_001059236.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001059238.1 identified by match to protein family HMM PF02515 YP_001059239.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001059240.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_001059241.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_001059243.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_001059245.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001059246.1 identified by match to protein family HMM PF00376 YP_001059247.1 identified by match to protein family HMM PF07690 YP_001059248.1 identified by match to protein family HMM PF06167 YP_001059249.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_001059252.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001059254.1 identified by match to protein family HMM PF02627 YP_001059255.1 identified by match to protein family HMM PF00376 YP_001059257.1 identified by match to protein family HMM PF06078 YP_001059258.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001059260.1 identified by match to protein family HMM PF02082 YP_001059261.1 identified by match to protein family HMM PF01152 YP_001059262.1 identified by match to protein family HMM PF02391 YP_001059263.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_001059264.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_001059266.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001059267.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_001059268.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_001059269.1 identified by match to protein family HMM PF04430 YP_001059270.1 identified by match to protein family HMM PF02366 YP_001059272.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_001059273.1 identified by match to protein family HMM PF00535 YP_001059274.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911 YP_001059275.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370 YP_001059276.1 identified by match to protein family HMM PF01522 YP_001059277.1 identified by match to protein family HMM PF00578 YP_001059278.1 identified by match to protein family HMM PF02562 YP_001059279.1 identified by match to protein family HMM PF00877 YP_001059280.1 identified by match to protein family HMM PF01384 YP_001059281.1 identified by match to protein family HMM PF01865 YP_001059282.1 unwinds double stranded DNA YP_001059284.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001059285.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001059287.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001059289.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001059291.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409 YP_001059292.1 identified by match to protein family HMM PF00116 YP_001059293.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001059294.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate YP_001059295.1 identified by match to protein family HMM PF01261 YP_001059296.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01505 YP_001059298.1 identified by match to protein family HMM PF01476 YP_001059300.1 identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520 YP_001059302.1 identified by match to protein family HMM PF07769 YP_001059307.1 identified by match to protein family HMM PF00534 YP_001059310.1 identified by match to protein family HMM PF00924 YP_001059312.1 identified by match to protein family HMM PF00023 YP_001059313.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_001059314.1 identified by match to protein family HMM PF00583 YP_001059315.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_001059316.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_001059317.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_001059318.1 identified by match to protein family HMM PF01571 YP_001059319.1 identified by match to protein family HMM PF05742 YP_001059320.1 identified by match to protein family HMM PF00583 YP_001059321.1 identified by match to protein family HMM PF07859 YP_001059322.1 identified by match to protein family HMM PF00107 YP_001059323.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_001059324.1 identified by match to protein family HMM PF07876 YP_001059327.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001059328.1 identified by match to protein family HMM PF00857 YP_001059329.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_001059331.1 activates fatty acids by binding to coenzyme A YP_001059332.1 identified by match to protein family HMM PF02696 YP_001059333.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357 YP_001059334.1 Involved in cell division; probably involved in intracellular septation YP_001059335.1 identified by match to protein family HMM PF01722 YP_001059336.1 identified by match to protein family HMM PF00639 YP_001059337.1 identified by match to protein family HMM PF00583 YP_001059338.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001059340.1 identified by match to protein family HMM PF01266 YP_001059341.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_001059343.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_001059344.1 identified by match to protein family HMM PF00005 YP_001059345.1 identified by match to protein family HMM PF00657 YP_001059347.1 identified by match to protein family HMM PF00639 YP_001059354.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_001059355.1 binds and unfolds substrates as part of the ClpXP protease YP_001059356.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_001059357.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_001059360.2 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_001059361.1 identified by match to protein family HMM PF01047 YP_001059363.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_001059364.1 identified by match to protein family HMM PF00196; match to protein family HMM PF04545; match to protein family HMM PF04967 YP_001059365.1 identified by match to protein family HMM PF00267 YP_001059366.1 identified by match to protein family HMM PF07690 YP_001059367.1 identified by match to protein family HMM PF00850 YP_001059373.1 identified by match to protein family HMM PF05488 YP_001059379.1 identified by match to protein family HMM PF00494 YP_001059380.1 identified by match to protein family HMM PF07394; match to protein family HMM TIGR01409 YP_001059384.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation YP_001059385.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001059386.1 identified by match to protein family HMM PF00578 YP_001059387.1 identified by match to protein family HMM PF02627 YP_001059389.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_001059390.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_001059391.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_001059395.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_001059396.1 identified by match to protein family HMM PF00291 YP_001059401.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_001059403.1 identified by match to protein family HMM PF04012 YP_001059404.1 identified by match to protein family HMM PF07719 YP_001059405.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_001059408.1 identified by match to protein family HMM PF07311 YP_001059410.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001059411.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway. YP_001059415.1 identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962 YP_001059416.1 identified by match to protein family HMM PF06181 YP_001059417.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_001059418.3 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_001059419.1 identified by match to protein family HMM TIGR03164 YP_001059420.1 identified by match to protein family HMM PF01522 YP_001059421.1 identified by match to protein family HMM PF01177 YP_001059422.1 identified by match to protein family HMM PF02133 YP_001059424.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001059425.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine YP_001059426.1 identified by match to protein family HMM PF00383 YP_001059430.1 identified by match to protein family HMM PF07690 YP_001059434.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001059437.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_001059439.1 identified by match to protein family HMM PF05988 YP_001059441.1 identified by match to protein family HMM PF00892 YP_001059442.1 identified by match to protein family HMM PF03658 YP_001059443.1 identified by match to protein family HMM PF03364 YP_001059444.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001059445.1 identified by match to protein family HMM PF01145 YP_001059446.1 identified by match to protein family HMM PF01957 YP_001059447.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001059448.1 identified by match to protein family HMM PF05023 YP_001059449.1 identified by match to protein family HMM PF00082 YP_001059451.1 identified by match to protein family HMM PF03618; similar to protein RSc1420 YP_001059453.1 identified by match to protein family HMM PF00588 YP_001059454.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001059455.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_001059456.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_001059457.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_001059458.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_001059459.1 identified by match to protein family HMM PF03938 YP_001059460.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_001059462.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_001059463.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001059464.1 identified by match to protein family HMM PF01148 YP_001059465.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_001059466.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001059467.1 Catalyzes the phosphorylation of UMP to UDP YP_001059468.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001059469.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001059470.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_001059471.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_001059472.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001059473.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001059474.1 identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 YP_001059478.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_001059479.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151 YP_001059480.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate YP_001059481.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_001059482.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_001059483.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_001059484.1 involved in methylation of ribosomal protein L3 YP_001059485.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_001059486.1 identified by match to protein family HMM PF00255 YP_001059487.1 identified by match to protein family HMM PF00005 YP_001059489.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001059490.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_001059491.2 identified by match to protein family HMM PF07690 YP_001059492.1 identified by match to protein family HMM TIGR00097 YP_001059495.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_001059496.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_001059497.1 identified by match to protein family HMM PF00814 YP_001059498.1 identified by match to protein family HMM PF00887 YP_001059500.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001059502.1 identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346 YP_001059503.1 identified by match to protein family HMM PF00582 YP_001059505.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001059506.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_001059507.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_001059508.1 identified by match to protein family HMM PF03674 YP_001059509.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_001059510.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_001059512.1 identified by match to protein family HMM PF00583 YP_001059514.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001059515.1 identified by match to protein family HMM PF01734 YP_001059516.1 identified by match to protein family HMM PF00877 YP_001059517.1 identified by match to protein family HMM PF00005 YP_001059518.1 identified by match to protein family HMM PF00528 YP_001059519.1 identified by match to protein family HMM PF00528 YP_001059520.1 identified by match to protein family HMM PF00496 YP_001059521.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_001059524.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_001059526.1 identified by match to protein family HMM PF00175 YP_001059527.1 identified by match to protein family HMM PF04055 YP_001059528.1 identified by match to protein family HMM PF00037 YP_001059530.1 identified by match to protein family HMM PF00440 YP_001059531.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_001059534.1 identified by match to protein family HMM PF00206; match to protein family HMM PF02222; match to protein family HMM PF02655 YP_001059535.1 identified by match to protein family HMM PF00291 YP_001059536.1 identified by match to protein family HMM PF00288 YP_001059537.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_001059538.1 identified by match to protein family HMM PF00535 YP_001059539.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_001059540.1 identified by match to protein family HMM PF01757 YP_001059542.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001059543.1 identified by match to protein family HMM PF00456 YP_001059547.1 identified by match to protein family HMM PF02668 YP_001059549.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_001059551.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_001059552.2 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733 YP_001059553.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_001059557.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01409; match to protein family HMM TIGR01730 YP_001059558.1 identified by match to protein family HMM PF00873 YP_001059560.1 identified by match to protein family HMM PF00657; match to protein family HMM PF03797; match to protein family HMM TIGR01414 YP_001059566.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_001059568.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_001059569.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_001059570.1 identified by match to protein family HMM PF00730 YP_001059571.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001059572.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001059573.1 identified by match to protein family HMM PF00160 YP_001059574.1 identified by match to protein family HMM PF00160 YP_001059575.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_001059577.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_001059578.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050 YP_001059579.1 identified by match to protein family HMM PF00459 YP_001059585.1 This protein performs the mismatch recognition step during the DNA repair process YP_001059588.1 identified by match to protein family HMM PF08007 YP_001059589.1 identified by match to protein family HMM PF00753 YP_001059591.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001059593.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001059594.1 identified by match to protein family HMM PF02163 YP_001059595.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_001059596.1 identified by match to protein family HMM PF02811 YP_001059597.1 identified by match to protein family HMM PF00561 YP_001059598.1 identified by match to protein family HMM PF04305 YP_001059599.1 identified by match to protein family HMM PF00132 YP_001059600.1 identified by match to protein family HMM PF01430 YP_001059602.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein YP_001059603.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001059604.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_001059605.3 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001059607.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_001059608.1 identified by match to protein family HMM PF01026 YP_001059609.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02211 YP_001059610.1 identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212 YP_001059614.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_001059616.2 identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020 YP_001059617.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_001059618.1 identified by match to protein family HMM PF05433 YP_001059619.1 identified by match to protein family HMM PF04384 YP_001059620.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007 YP_001059621.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_001059622.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_001059623.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011 YP_001059624.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999 YP_001059625.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis YP_001059626.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_001059627.1 identified by match to protein family HMM PF01451 YP_001059629.1 identified by match to protein family HMM PF00037 YP_001059630.1 identified by match to protein family HMM PF02754 YP_001059632.1 identified by match to protein family HMM PF01614 YP_001059633.1 identified by match to protein family HMM PF01609 YP_001059634.1 identified by match to protein family HMM PF00768 YP_001059635.1 identified by match to protein family HMM TIGR01841 YP_001059636.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_001059637.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01348 YP_001059638.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_001059639.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_001059640.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001059641.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_001059644.1 identified by match to protein family HMM PF01432 YP_001059645.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_001059647.1 identified by match to protein family HMM PF07690 YP_001059648.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886 YP_001059650.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01580 YP_001059651.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660 YP_001059652.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_001059653.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_001059654.1 identified by match to protein family HMM PF00672; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_001059655.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04967 YP_001059656.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_001059657.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR01818 YP_001059658.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001059659.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_001059662.1 identified by match to protein family HMM PF00994 YP_001059667.1 identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967 YP_001059668.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_001059669.1 identified by match to protein family HMM PF04362 YP_001059670.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001059672.1 identified by match to protein family HMM PF02515 YP_001059673.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_001059674.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001059677.1 identified by match to protein family HMM PF00202 YP_001059678.1 identified by match to protein family HMM PF00120 YP_001059679.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_001059684.1 identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017 YP_001059686.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_001059687.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_001059688.1 identified by match to protein family HMM PF05962 YP_001059689.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_001059690.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018 YP_001059691.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_001059696.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472; match to protein family HMM PF04967 YP_001059700.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_001059701.1 identified by match to protein family HMM PF00875; match to protein family HMM PF03441 YP_001059702.1 identified by match to protein family HMM PF00487 YP_001059705.1 identified by match to protein family HMM PF01883 YP_001059707.1 identified by match to protein family HMM PF05940 YP_001059709.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001059711.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495 YP_001059715.1 identified by match to protein family HMM PF01136 YP_001059716.1 identified by match to protein family HMM PF01136 YP_001059718.1 identified by match to protein family HMM PF03060 YP_001059720.1 identified by match to protein family HMM PF00027 YP_001059721.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001059722.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001059725.1 identified by match to protein family HMM PF05940 YP_001059727.1 with SufCD activates cysteine desulfurase SufS YP_001059728.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_001059729.1 identified by match to protein family HMM PF01458 YP_001059730.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212; match to protein family HMM TIGR01979 YP_001059731.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994 YP_001059732.1 identified by match to protein family HMM PF01883 YP_001059734.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_001059735.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_001059738.1 identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433 YP_001059739.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843 YP_001059740.1 identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842 YP_001059741.1 identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847 YP_001059742.1 identified by match to protein family HMM PF00487 YP_001059743.1 identified by match to protein family HMM PF00497 YP_001059745.1 identified by match to protein family HMM PF00043 YP_001059746.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism YP_001059747.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_001059748.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH YP_001059749.1 identified by match to protein family HMM PF04958; match to protein family HMM TIGR03244 YP_001059750.1 identified by match to protein family HMM PF04958 YP_001059751.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate YP_001059753.1 identified by match to protein family HMM PF00165 YP_001059754.1 identified by match to protein family HMM PF00005 YP_001059755.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001059756.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001059760.1 identified by match to protein family HMM PF04794 YP_001059761.1 identified by match to protein family HMM PF04055 YP_001059762.1 identified by match to protein family HMM PF00535 YP_001059763.1 identified by match to protein family HMM PF00296 YP_001059765.1 identified by match to protein family HMM PF00561 YP_001059767.1 identified by match to protein family HMM TIGR00687 YP_001059769.1 identified by match to protein family HMM PF04185; match to protein family HMM PF05506; match to protein family HMM TIGR01409 YP_001059770.1 identified by match to protein family HMM PF01094 YP_001059772.1 identified by match to protein family HMM PF01266 YP_001059775.1 identified by match to protein family HMM PF00534 YP_001059777.1 identified by match to protein family HMM PF00005 YP_001059778.1 identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400 YP_001059779.1 identified by match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484 YP_001059782.1 identified by match to protein family HMM PF02630 YP_001059783.1 identified by match to protein family HMM PF04314 YP_001059785.1 identified by match to protein family HMM PF00583 YP_001059786.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_001059787.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001059789.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_001059790.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001059792.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001059794.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001059795.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_001059796.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_001059797.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_001059798.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_001059799.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001059800.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_001059801.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_001059802.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001059803.1 identified by match to protein family HMM PF05768 YP_001059804.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_001059805.1 identified by match to protein family HMM PF03888 YP_001059807.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_001059809.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001059810.1 carries the fatty acid chain in fatty acid biosynthesis YP_001059811.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001059812.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_001059813.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001059814.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_001059815.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001059816.1 identified by match to protein family HMM PF02620 YP_001059817.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_001059818.1 identified by match to protein family HMM PF00590 YP_001059819.1 identified by match to protein family HMM PF01343 YP_001059820.1 identified by match to protein family HMM PF00355 YP_001059821.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_001059822.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_001059823.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_001059824.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_001059825.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_001059826.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_001059828.1 identified by match to protein family HMM PF00583 YP_001059829.1 identified by match to protein family HMM PF02646 YP_001059830.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001059832.1 identified by match to protein family HMM PF02589 YP_001059833.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_001059835.1 identified by match to protein family HMM PF00037 YP_001059836.1 identified by match to protein family HMM PF01609 YP_001059837.1 identified by match to protein family HMM PF05981 YP_001059843.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001059845.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_001059846.1 identified by match to protein family HMM PF03061 YP_001059849.1 identified by match to protein family HMM PF01022 YP_001059852.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_001059853.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001059860.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001059861.1 identified by match to protein family HMM PF00186 YP_001059862.1 identified by match to protein family HMM PF01609 YP_001059863.1 identified by match to protein family HMM PF01523 YP_001059865.1 identified by match to protein family HMM PF04751 YP_001059866.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis YP_001059867.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_001059868.1 identified by match to protein family HMM PF01435 YP_001059869.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_001059871.2 catalyzes the formation of adenosylcobinamide-phosphate from adenosylcobyric acid YP_001059872.1 identified by match to protein family HMM PF00293 YP_001059874.1 identified by match to protein family HMM PF00583 YP_001059875.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001059876.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001059877.1 Essential for efficient processing of 16S rRNA YP_001059878.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001059881.1 identified by match to protein family HMM PF04055 YP_001059882.1 identified by match to protein family HMM PF01037 YP_001059883.1 catalyzes the oxidative deamination of D-amino acids YP_001059884.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001059885.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001059886.1 identified by match to protein family HMM PF01012 YP_001059887.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_001059888.1 identified by match to protein family HMM PF00528 YP_001059889.1 part of the metNIQ transport system for methionine YP_001059890.1 identified by match to protein family HMM PF00561 YP_001059891.1 identified by match to protein family HMM PF00850 YP_001059892.1 identified by match to protein family HMM TIGR02282 YP_001059893.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_001059895.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197 YP_001059896.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02198 YP_001059897.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_001059898.1 identified by match to protein family HMM PF00515 YP_001059900.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_001059901.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001059902.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_001059903.2 fusion of tyrA/aroA YP_001059904.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807 YP_001059905.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_001059907.1 negatively supercoils closed circular double-stranded DNA YP_001059910.1 identified by match to protein family HMM PF00691 YP_001059911.1 Involved in ubiquinone biosynthesis YP_001059912.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_001059916.1 identified by match to protein family HMM PF00126 YP_001059919.1 identified by match to protein family HMM PF01512 YP_001059920.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_001059923.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_001059924.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_001059926.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001059928.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_001059930.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001059931.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein YP_001059933.1 identified by match to protein family HMM PF02625; match to protein family HMM TIGR02964 YP_001059934.1 catalyzes the formation of inosine from adenosine YP_001059935.1 identified by match to protein family HMM PF00860 YP_001059936.1 Catalyzes the deamination of guanine YP_001059938.1 identified by match to protein family HMM PF01169 YP_001059940.1 identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414 YP_001059941.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_001059942.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001059943.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_001059949.1 identified by match to protein family HMM PF04226 YP_001059952.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_001059956.1 catalyzes the interconversion of chorismate to prephenate YP_001059957.1 identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM TIGR00573 YP_001059958.1 identified by match to protein family HMM PF00313 YP_001059960.1 identified by match to protein family HMM PF00267; match to protein family HMM TIGR03304 YP_001059961.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001059962.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_001059963.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_001059964.1 Essential for recycling GMP and indirectly, cGMP YP_001059965.1 identified by match to protein family HMM PF03755; match to protein family HMM TIGR00255 YP_001059966.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_001059967.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_001059968.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001059973.1 identified by match to protein family HMM TIGR01352 YP_001059975.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001059977.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193 YP_001059978.1 identified by match to protein family HMM PF00654 YP_001059980.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_001059981.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_001059982.1 blocks the formation of polar Z-ring septums YP_001059983.1 identified by match to protein family HMM PF00583 YP_001059987.1 identified by match to protein family HMM PF02486 YP_001059995.1 identified by match to protein family HMM PF00263 YP_001059998.1 identified by match to protein family HMM PF00239 YP_001059999.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001060001.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07728 YP_001060002.1 participates with LolB in the incorporation of lipoprotein into the outer membrane YP_001060003.1 identified by match to protein family HMM PF01580 YP_001060004.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_001060005.1 identified by match to protein family HMM PF01713 YP_001060006.1 identified by match to protein family HMM PF03458 YP_001060007.1 identified by match to protein family HMM PF00005 YP_001060008.1 identified by match to protein family HMM PF00528 YP_001060009.1 identified by match to protein family HMM PF00528 YP_001060011.1 identified by match to protein family HMM PF01547 YP_001060012.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_001060013.1 identified by match to protein family HMM TIGR01198 YP_001060014.1 glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_001060016.1 identified by match to protein family HMM PF00497 YP_001060017.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001060018.1 identified by match to protein family HMM PF00005 YP_001060019.1 catalyzes the formation of pyruvate from D-cysteine YP_001060021.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_001060024.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_001060025.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_001060026.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_001060029.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis YP_001060030.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001060031.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_001060032.1 identified by match to protein family HMM PF00155 YP_001060034.1 identified by match to protein family HMM PF01464 YP_001060035.1 identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148 YP_001060036.1 identified by match to protein family HMM PF01810 YP_001060037.1 catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine YP_001060040.1 identified by match to protein family HMM PF03807 YP_001060041.1 identified by match to protein family HMM PF02325 YP_001060042.1 identified by match to protein family HMM PF02641 YP_001060043.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_001060048.1 identified by match to protein family HMM PF02146 YP_001060060.1 identified by match to protein family HMM PF00589 YP_001060068.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_001060069.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_001060071.1 identified by match to protein family HMM PF03692 YP_001060073.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001060075.1 identified by match to protein family HMM PF01135; match to protein family HMM PF05175 YP_001060076.1 identified by match to protein family HMM PF00581 YP_001060077.1 catalyze the conversion of beta amino acids to the corresponding beta keto acid with pyruvate as the amine acceptor YP_001060080.2 identified by match to protein family HMM PF02653 YP_001060081.1 identified by match to protein family HMM PF02653; match to protein family HMM TIGR01409 YP_001060082.1 identified by match to protein family HMM PF00005 YP_001060083.1 identified by match to protein family HMM PF00005 YP_001060084.1 identified by match to protein family HMM PF01774 YP_001060086.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_001060087.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active YP_001060088.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_001060089.1 involved in the assembly of the urease metallocenter; possible nickel donor YP_001060090.1 identified by match to protein family HMM PF01730 YP_001060091.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101 YP_001060092.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A YP_001060094.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193 YP_001060095.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_001060097.1 identified by match to protein family HMM PF00535 YP_001060098.1 identified by match to protein family HMM PF00534 YP_001060099.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_001060100.1 identified by match to protein family HMM PF00953 YP_001060102.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02629; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001060103.1 identified by match to protein family HMM PF00953 YP_001060104.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001060105.1 identified by match to protein family HMM PF00535 YP_001060106.1 identified by match to protein family HMM PF00535 YP_001060107.1 identified by match to protein family HMM PF00535 YP_001060109.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001060110.1 identified by match to protein family HMM PF01757 YP_001060111.1 identified by match to protein family HMM PF00005 YP_001060112.1 identified by match to protein family HMM PF01061 YP_001060113.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM TIGR01214 YP_001060116.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_001060117.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_001060118.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_001060119.1 identified by match to protein family HMM PF01553 YP_001060120.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_001060121.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001060122.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_001060123.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_001060124.1 identified by match to protein family HMM PF02622 YP_001060127.1 identified by match to protein family HMM PF00301 YP_001060129.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001060130.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001060138.1 identified by match to protein family HMM PF01638 YP_001060139.1 identified by match to protein family HMM PF00107 YP_001060143.1 identified by match to protein family HMM PF03922 YP_001060147.1 identified by match to protein family HMM PF01638; match to protein family HMM PF03551 YP_001060148.1 identified by match to protein family HMM PF00753 YP_001060149.1 identified by match to protein family HMM PF01381 YP_001060150.1 identified by match to protein family HMM PF00583 YP_001060151.1 identified by match to protein family HMM PF01810 YP_001060152.1 identified by match to protein family HMM PF03009 YP_001060153.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001060155.1 identified by match to protein family HMM PF01925 YP_001060156.1 identified by match to protein family HMM PF00450 YP_001060160.1 identified by match to protein family HMM PF04972 YP_001060161.1 identified by match to protein family HMM PF01323 YP_001060162.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001060163.1 identified by match to protein family HMM PF01032 YP_001060164.1 identified by match to protein family HMM PF01497 YP_001060165.1 identified by match to protein family HMM PF00005 YP_001060166.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_001060169.1 identified by match to protein family HMM PF01547 YP_001060171.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02965 YP_001060172.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450; match to protein family HMM TIGR02963 YP_001060174.1 identified by match to protein family HMM PF07690 YP_001060175.1 identified by match to protein family HMM PF00892 YP_001060176.1 identified by match to protein family HMM PF00165 YP_001060177.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212 YP_001060179.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001060180.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001060181.1 identified by match to protein family HMM PF00881; match to protein family HMM TIGR02476 YP_001060182.1 identified by match to protein family HMM PF07690 YP_001060184.1 identified by match to protein family HMM PF07690 YP_001060185.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR01266 YP_001060186.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine YP_001060187.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001060189.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_001060190.1 identified by match to protein family HMM PF00753 YP_001060191.1 identified by match to protein family HMM PF00563 YP_001060193.1 identified by match to protein family HMM PF04828 YP_001060195.1 identified by match to protein family HMM PF01614 YP_001060196.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001060198.1 identified by match to protein family HMM PF00578 YP_001060199.1 identified by match to protein family HMM PF05957 YP_001060204.1 identified by match to protein family HMM TIGR02532 YP_001060206.1 identified by match to protein family HMM TIGR02532 YP_001060207.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_001060208.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001060210.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001060211.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; match to protein family HMM TIGR02799 YP_001060212.1 identified by match to protein family HMM PF01618; match to protein family HMM TIGR02796 YP_001060213.1 identified by match to protein family HMM PF02472; match to protein family HMM TIGR02801 YP_001060214.1 identified by match to protein family HMM PF06519; match to protein family HMM TIGR01352; match to protein family HMM TIGR02794 YP_001060215.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_001060216.1 identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802 YP_001060217.1 identified by match to protein family HMM TIGR02795 YP_001060220.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_001060222.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_001060223.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670 YP_001060224.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_001060225.1 identified by match to protein family HMM PF00534 YP_001060227.1 identified by match to protein family HMM PF00132 YP_001060228.1 identified by match to protein family HMM PF05159 YP_001060231.1 identified by match to protein family HMM PF02706; match to protein family HMM TIGR01005 YP_001060232.1 identified by match to protein family HMM PF01451 YP_001060233.1 identified by match to protein family HMM PF02563 YP_001060234.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025 YP_001060236.1 identified by match to protein family HMM PF00165 YP_001060239.1 identified by match to protein family HMM PF01569 YP_001060242.1 identified by match to protein family HMM PF02012 YP_001060244.1 identified by match to protein family HMM PF00155; match to protein family HMM PF01212 YP_001060245.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_001060246.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801 YP_001060247.1 identified by match to protein family HMM PF00884 YP_001060248.1 identified by match to protein family HMM PF00106 YP_001060249.1 identified by match to protein family HMM PF05159 YP_001060251.1 identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 YP_001060252.1 identified by match to protein family HMM PF00483 YP_001060253.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_001060254.1 identified by match to protein family HMM PF00288 YP_001060255.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_001060256.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001060258.1 identified by match to protein family HMM PF00534 YP_001060261.1 identified by match to protein family HMM PF00534 YP_001060265.2 identified by match to protein family HMM PF02563 YP_001060266.1 identified by match to protein family HMM PF00534 YP_001060268.1 identified by match to protein family HMM PF05159 YP_001060269.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_001060271.1 identified by match to protein family HMM PF00310 YP_001060272.1 identified by match to protein family HMM PF00924 YP_001060275.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_001060276.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_001060277.1 identified by match to protein family HMM TIGR02246 YP_001060278.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001060280.1 identified by match to protein family HMM PF00308 YP_001060281.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_001060282.1 identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942 YP_001060283.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_001060284.1 identified by match to protein family HMM PF01712 YP_001060285.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_001060286.1 identified by match to protein family HMM PF00425 YP_001060287.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_001060289.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001060291.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_001060293.1 identified by match to protein family HMM PF01479 YP_001060294.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_001060295.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_001060296.2 catalyzes the phosphorylation of NAD to NADP YP_001060297.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_001060298.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_001060299.1 identified by match to protein family HMM TIGR02099 YP_001060300.1 identified by match to protein family HMM PF00795 YP_001060301.1 identified by match to protein family HMM PF01523 YP_001060303.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_001060304.1 identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_001060305.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_001060306.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_001060307.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_001060308.1 identified by match to protein family HMM PF01565 YP_001060309.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_001060310.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_001060311.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_001060313.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_001060314.1 identified by match to protein family HMM TIGR01098 YP_001060315.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315 YP_001060316.1 identified by match to protein family HMM PF07969; match to protein family HMM TIGR02318 YP_001060317.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02324 YP_001060318.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02323 YP_001060319.1 identified by match to protein family HMM PF06007 YP_001060320.1 identified by match to protein family HMM PF05861 YP_001060321.1 identified by match to protein family HMM PF05845 YP_001060322.1 identified by match to protein family HMM PF06754; match to protein family HMM TIGR03293 YP_001060324.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02325 YP_001060325.1 identified by match to protein family HMM PF06299 YP_001060326.1 identified by match to protein family HMM TIGR02322 YP_001060327.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway YP_001060328.1 identified by match to protein family HMM PF01638 YP_001060330.1 identified by match to protein family HMM PF00210 YP_001060333.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_001060335.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001060336.1 catalyzes branch migration in Holliday junction intermediates YP_001060337.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001060339.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_001060340.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_001060341.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_001060342.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_001060345.1 identified by match to protein family HMM PF04264 YP_001060346.1 identified by match to protein family HMM PF04264 YP_001060347.1 identified by match to protein family HMM PF01292 YP_001060349.1 identified by match to protein family HMM PF04403 YP_001060350.1 identified by match to protein family HMM PF04403 YP_001060351.1 identified by match to protein family HMM PF02470 YP_001060352.1 identified by match to protein family HMM PF03886 YP_001060355.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02926 YP_001060361.1 identified by match to protein family HMM PF02233 YP_001060363.1 identified by match to protein family HMM PF01262; match to protein family HMM PF05222 YP_001060364.1 identified by match to protein family HMM PF00293 YP_001060365.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001060366.1 identified by match to protein family HMM PF01645 YP_001060367.1 identified by match to protein family HMM PF02798 YP_001060369.1 identified by match to protein family HMM PF00557; match to protein family HMM PF05195 YP_001060370.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988 YP_001060371.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_001060372.1 identified by match to protein family HMM PF02954 YP_001060373.1 involved in de novo purine biosynthesis YP_001060375.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_001060376.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001060377.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001060380.1 identified by match to protein family HMM PF00300 YP_001060381.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_001060382.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001060383.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_001060384.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_001060385.1 identified by match to protein family HMM PF02798 YP_001060386.1 identified by match to protein family HMM PF00165 YP_001060387.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_001060388.1 forms a direct contact with the tRNA during translation YP_001060389.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001060391.1 identified by match to protein family HMM PF02566 YP_001060393.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_001060395.1 identified by match to protein family HMM PF00310 YP_001060399.1 identified by match to protein family HMM PF00011 YP_001060400.1 identified by match to protein family HMM PF00011 YP_001060402.1 identified by match to protein family HMM PF00166 YP_001060404.1 identified by match to protein family HMM PF00005 YP_001060405.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001060406.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001060407.1 identified by match to protein family HMM PF00497 YP_001060408.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812 YP_001060410.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001060412.1 identified by match to protein family HMM PF07690 YP_001060413.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001060414.1 identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313 YP_001060415.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_001060417.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_001060418.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_001060420.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001060422.1 identified by match to protein family HMM PF03653 YP_001060423.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001060424.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_001060426.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001060427.1 identified by match to protein family HMM PF02472 YP_001060428.1 identified by match to protein family HMM PF01618 YP_001060429.2 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_001060430.1 identified by match to protein family HMM PF04355 YP_001060431.1 identified by match to protein family HMM PF01475 YP_001060432.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_001060433.3 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_001060434.1 involved in the transport of C4-dicarboxylates across the membrane YP_001060435.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001060436.1 controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source YP_001060437.1 identified by match to protein family HMM PF00484 YP_001060438.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide YP_001060439.1 identified by match to protein family HMM PF07690 YP_001060441.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_001060442.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_001060444.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_001060445.1 identified by match to protein family HMM PF00903 YP_001060446.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_001060449.1 identified by match to protein family HMM PF00545 YP_001060450.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_001060451.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_001060452.1 identified by match to protein family HMM PF04608 YP_001060453.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_001060454.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_001060455.1 identified by match to protein family HMM PF01263 YP_001060456.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001060457.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_001060458.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_001060459.1 identified by match to protein family HMM PF00532; match to protein family HMM TIGR01409 YP_001060460.1 identified by match to protein family HMM PF00106 YP_001060461.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism YP_001060462.1 identified by match to protein family HMM PF05035 YP_001060463.1 identified by match to protein family HMM PF01614 YP_001060465.1 identified by match to protein family HMM PF00450 YP_001060468.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_001060469.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_001060470.1 identified by match to protein family HMM PF00773 YP_001060471.1 identified by match to protein family HMM PF05728 YP_001060472.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01081 YP_001060475.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001060476.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001060477.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001060478.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_001060479.1 identified by match to protein family HMM TIGR02098 YP_001060481.1 identified by match to protein family HMM PF00294 YP_001060482.1 identified by match to protein family HMM PF05433 YP_001060484.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001060485.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001060487.1 identified by match to protein family HMM PF01510 YP_001060489.1 identified by match to protein family HMM PF01578 YP_001060490.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_001060491.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively YP_001060492.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_001060493.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001060494.1 hydrolyzes diadenosine polyphosphate YP_001060497.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001060498.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001060500.1 involved in the peptidyltransferase reaction during translation YP_001060501.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_001060502.1 identified by match to protein family HMM PF00348 YP_001060503.1 identified by match to protein family HMM PF00589 YP_001060504.1 identified by match to protein family HMM PF01381 YP_001060509.1 identified by match to protein family HMM PF01381 YP_001060515.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_001060516.1 identified by match to protein family HMM PF00437 YP_001060517.1 identified by match to protein family HMM PF00482 YP_001060518.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_001060519.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_001060520.1 identified by match to protein family HMM PF07072 YP_001060521.1 identified by match to protein family HMM PF03884 YP_001060522.1 identified by match to protein family HMM PF00293 YP_001060523.1 identified by match to protein family HMM PF05673 YP_001060524.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_001060525.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_001060527.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_001060530.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_001060531.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_001060532.1 identified by match to protein family HMM PF03799 YP_001060533.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001060534.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001060535.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001060536.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614 YP_001060537.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_001060538.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001060539.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_001060540.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_001060541.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_001060542.1 identified by match to protein family HMM PF04999; match to protein family HMM TIGR02209 YP_001060543.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_001060544.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_001060546.1 identified by match to protein family HMM PF00267 YP_001060547.1 activates fatty acids by binding to coenzyme A YP_001060548.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_001060550.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001060551.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02288 YP_001060552.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_001060553.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001060554.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; match to protein family HMM TIGR02286 YP_001060555.1 identified by match to protein family HMM TIGR02155 YP_001060556.1 identified by match to protein family HMM PF03562; match to protein family HMM PF06725 YP_001060557.1 protein associated with Co2+ and Mg2+ efflux YP_001060559.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_001060560.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_001060561.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_001060562.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_001060563.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001060564.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_001060565.1 identified by match to protein family HMM PF01928 YP_001060566.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_001060567.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_001060568.1 identified by match to protein family HMM PF05299 YP_001060570.2 identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988 YP_001060574.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001060575.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR01957 YP_001060577.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773 YP_001060583.1 identified by match to protein family HMM PF03009; match to protein family HMM TIGR01409 YP_001060585.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_001060587.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001060588.1 identified by match to protein family HMM PF00857 YP_001060590.1 identified by match to protein family HMM PF00557 YP_001060594.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_001060595.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001060596.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536 YP_001060597.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365 YP_001060598.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate YP_001060599.1 identified by match to protein family HMM PF02900 YP_001060600.1 identified by match to protein family HMM PF00324 YP_001060602.1 identified by match to protein family HMM PF00313 YP_001060606.1 identified by match to protein family HMM PF00881 YP_001060607.1 identified by match to protein family HMM PF07690 YP_001060608.1 identified by match to protein family HMM PF00440 YP_001060609.1 identified by match to protein family HMM PF07209 YP_001060611.1 identified by match to protein family HMM PF05175 YP_001060613.1 identified by match to protein family HMM PF01757 YP_001060617.1 identified by match to protein family HMM PF01433 YP_001060623.1 identified by match to protein family HMM PF00529 YP_001060624.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412 YP_001060625.2 identified by match to protein family HMM PF02321 YP_001060628.1 identified by match to protein family HMM PF02557 YP_001060630.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_001060632.1 identified by match to protein family HMM PF00691 YP_001060633.1 identified by match to protein family HMM PF06812 YP_001060634.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001060635.1 identified by match to protein family HMM PF06996 YP_001060636.1 identified by match to protein family HMM PF05947 YP_001060637.1 identified by match to protein family HMM PF07025 YP_001060638.1 identified by match to protein family HMM PF05638 YP_001060639.1 identified by match to protein family HMM PF05943 YP_001060640.1 identified by match to protein family HMM PF05591 YP_001060641.1 identified by match to protein family HMM PF07719 YP_001060644.1 identified by match to protein family HMM PF05936 YP_001060647.1 identified by match to protein family HMM PF01527 YP_001060648.1 identified by match to protein family HMM PF00665 YP_001060649.1 identified by match to protein family HMM PF02384; match to protein family HMM PF04313 YP_001060650.1 identified by match to protein family HMM PF04386 YP_001060651.1 identified by match to protein family HMM PF00462; match to protein family HMM PF02798 YP_001060652.1 identified by match to protein family HMM PF02167 YP_001060653.1 identified by match to protein family HMM PF00033 YP_001060654.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416 YP_001060655.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_001060656.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_001060657.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_001060658.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410 YP_001060659.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_001060660.1 identified by match to protein family HMM PF01230 YP_001060662.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_001060663.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_001060664.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001060665.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_001060666.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001060667.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_001060668.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001060669.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001060670.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_001060671.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_001060672.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001060673.1 identified by match to protein family HMM PF01722 YP_001060674.1 identified by match to protein family HMM PF01061 YP_001060675.1 identified by match to protein family HMM PF00005 YP_001060677.1 identified by match to protein family HMM PF05494 YP_001060678.1 identified by match to protein family HMM PF04333 YP_001060679.1 identified by match to protein family HMM PF02470 YP_001060680.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_001060681.1 identified by match to protein family HMM PF00005 YP_001060682.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_001060683.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_001060684.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate YP_001060685.1 identified by match to protein family HMM PF01266 YP_001060688.1 identified by match to protein family HMM PF00005; match to protein family HMM PF06472 YP_001060690.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_001060691.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001060693.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_001060694.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898 YP_001060695.1 identified by match to protein family HMM PF07605 YP_001060696.1 identified by match to protein family HMM PF03922 YP_001060697.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate YP_001060698.1 part of the UgpABCE glycerol-3-phosphate uptake system YP_001060699.1 with UgpABC is involved in uptake of glycerol-3-phosphate YP_001060700.1 identified by match to protein family HMM PF00528 YP_001060701.1 with UgpACE is involved in the uptake of glycerol-3-phosphate YP_001060702.1 dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_001060703.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_001060704.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_001060705.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515 YP_001060707.1 identified by match to protein family HMM PF05137 YP_001060709.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_001060710.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly YP_001060712.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_001060714.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_001060715.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_001060716.1 identified by match to protein family HMM PF01578 YP_001060717.2 identified by match to protein family HMM PF05140 YP_001060718.1 identified by match to protein family HMM PF00034 YP_001060719.2 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001060720.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001060721.1 identified by match to protein family HMM PF00085; match to protein family HMM PF02683 YP_001060722.1 identified by match to protein family HMM PF03091 YP_001060723.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001060724.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001060725.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001060726.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001060727.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001060728.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_001060729.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001060730.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001060731.1 late assembly protein YP_001060732.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001060733.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001060734.1 binds 5S rRNA along with protein L5 and L25 YP_001060735.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001060736.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001060737.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_001060738.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001060739.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001060740.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001060741.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001060742.1 one of the stabilizing components for the large ribosomal subunit YP_001060743.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001060744.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001060745.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001060746.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001060747.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001060748.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001060749.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001060750.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001060751.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001060752.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001060753.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001060754.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001060755.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001060756.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_001060757.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001060758.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001060759.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001060760.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001060761.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001060762.1 binds directly to 23S ribosomal RNA YP_001060763.1 Modulates Rho-dependent transcription termination YP_001060764.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_001060765.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001060769.1 identified by match to protein family HMM PF00657 YP_001060770.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA YP_001060771.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation YP_001060772.1 identified by match to protein family HMM PF05138; match to protein family HMM TIGR02158 YP_001060773.1 identified by match to protein family HMM PF01883; match to protein family HMM TIGR02159 YP_001060774.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160 YP_001060776.1 identified by match to protein family HMM PF00440 YP_001060777.1 identified by match to protein family HMM PF00583 YP_001060778.1 identified by match to protein family HMM PF01037 YP_001060779.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263 YP_001060781.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_001060783.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_001060784.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001060785.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_001060787.1 identified by match to protein family HMM PF00258 YP_001060788.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_001060792.1 identified by match to protein family HMM PF03922 YP_001060793.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001060794.1 identified by match to protein family HMM PF07690 YP_001060795.1 identified by match to protein family HMM PF01810 YP_001060796.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807 YP_001060797.1 identified by match to protein family HMM PF01927 YP_001060809.1 identified by match to protein family HMM PF00324 YP_001060810.1 identified by match to protein family HMM PF00034 YP_001060811.1 identified by match to protein family HMM PF04972 YP_001060812.1 identified by match to protein family HMM TIGR00441 YP_001060813.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_001060814.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_001060815.1 identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413 YP_001060816.1 identified by match to protein family HMM PF00753 YP_001060818.1 identified by match to protein family HMM PF01037 YP_001060819.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001060821.1 identified by match to protein family HMM PF00816 YP_001060823.1 identified by match to protein family HMM PF01243 YP_001060824.1 identified by match to protein family HMM PF07690 YP_001060825.1 identified by match to protein family HMM PF01094 YP_001060826.1 identified by match to protein family HMM PF03060 YP_001060828.1 identified by match to protein family HMM PF01738 YP_001060829.1 identified by match to protein family HMM PF01425 YP_001060830.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_001060831.1 identified by match to protein family HMM PF04020 YP_001060832.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_001060834.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes YP_001060836.1 positive regulator of class III flagellar genes YP_001060837.1 membrane protein involved in the flagellar export apparatus YP_001060838.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_001060839.1 identified by match to protein family HMM PF06983 YP_001060842.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation YP_001060843.1 identified by match to protein family HMM PF00072 YP_001060844.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_001060845.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_001060846.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_001060847.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001060848.1 identified by match to protein family HMM PF01584 YP_001060849.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 YP_001060850.1 identified by match to protein family HMM PF00072 YP_001060851.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_001060852.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_001060853.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems YP_001060854.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems YP_001060855.1 identified by match to protein family HMM PF00534 YP_001060858.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure YP_001060859.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001060860.1 identified by match to protein family HMM PF01869 YP_001060861.1 identified by match to protein family HMM PF03352 YP_001060863.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001060864.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus YP_001060865.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196 YP_001060867.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001060868.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_001060872.1 identified by match to protein family HMM PF00106 YP_001060873.1 identified by match to protein family HMM PF00132 YP_001060874.1 identified by match to protein family HMM PF00355 YP_001060877.1 identified by match to protein family HMM PF01810 YP_001060878.1 identified by match to protein family HMM PF04185; match to protein family HMM TIGR01409 YP_001060881.1 identified by match to protein family HMM PF05643 YP_001060883.1 identified by match to protein family HMM PF03783 YP_001060887.1 identified by match to protein family HMM PF00561 YP_001060888.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001060891.1 identified by match to protein family HMM PF01565; match to protein family HMM PF08031 YP_001060892.2 identified by match to protein family HMM PF03067 YP_001060897.1 identified by match to protein family HMM PF00589 YP_001060900.1 identified by match to protein family HMM PF06114 YP_001060902.1 identified by match to protein family HMM PF00263 YP_001060903.1 identified by match to protein family HMM PF05707 YP_001060910.1 identified by match to protein family HMM PF00034 YP_001060912.1 identified by match to protein family HMM PF00580 YP_001060914.1 identified by match to protein family HMM PF00657 YP_001060916.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_001060919.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_001060920.1 identified by match to protein family HMM PF00364; match to protein family HMM PF01597; match to protein family HMM TIGR00527 YP_001060921.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_001060924.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_001060926.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit YP_001060928.1 identified by match to protein family HMM PF00165 YP_001060929.1 identified by match to protein family HMM PF00171 YP_001060931.1 catalyzes the formation of acetaldehyde from ethanolamine YP_001060932.1 identified by match to protein family HMM PF06751 YP_001060933.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00908 YP_001060935.1 identified by match to protein family HMM PF01757 YP_001060937.1 identified by match to protein family HMM PF05552 YP_001060939.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_001060940.1 identified by match to protein family HMM PF00376; match to protein family HMM TIGR02047 YP_001060941.1 identified by match to protein family HMM PF03551 YP_001060945.1 identified by match to protein family HMM PF00497 YP_001060946.1 catalyzes the transfer of an amino moiety YP_001060947.1 identified by match to protein family HMM PF00440 YP_001060948.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001060949.1 identified by match to protein family HMM PF00501 YP_001060950.1 identified by match to protein family HMM PF01094 YP_001060951.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein YP_001060954.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_001060956.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_001060957.1 identified by match to protein family HMM PF00497 YP_001060958.1 identified by match to protein family HMM PF02629 YP_001060959.1 activates fatty acids by binding to coenzyme A YP_001060960.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_001060961.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001060962.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_001060963.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001060964.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001060965.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_001060966.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_001060967.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_001060971.1 identified by match to protein family HMM PF03600 YP_001060972.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_001060973.1 identified by match to protein family HMM PF01656 YP_001060974.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001060975.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001060976.1 identified by match to protein family HMM PF00005 YP_001060977.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02653 YP_001060978.1 identified by match to protein family HMM PF02653 YP_001060979.1 identified by match to protein family HMM PF01094 YP_001060981.1 identified by match to protein family HMM PF02653 YP_001060982.1 identified by match to protein family HMM PF02653 YP_001060985.1 identified by match to protein family HMM PF00005 YP_001060986.1 identified by match to protein family HMM PF00005 YP_001060988.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_001060989.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_001060991.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001060992.1 identified by match to protein family HMM PF01928 YP_001060993.1 identified by match to protein family HMM PF01037 YP_001060994.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_001060995.2 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_001060997.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001060998.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001061000.2 identified by match to protein family HMM PF00856 YP_001061003.1 identified by match to protein family HMM PF00724 YP_001061004.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_001061005.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047 YP_001061008.1 identified by match to protein family HMM PF00589 YP_001061010.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001061011.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_001061012.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_001061014.2 identified by match to protein family HMM PF04264 YP_001061016.1 identified by match to protein family HMM PF00440 YP_001061017.2 identified by match to protein family HMM PF07080 YP_001061019.1 identified by match to protein family HMM PF04952 YP_001061021.2 identified by match to protein family HMM PF00180; match to protein family HMM TIGR02089 YP_001061025.1 identified by match to protein family HMM PF02798 YP_001061028.1 identified by match to protein family HMM PF01734 YP_001061029.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_001061030.1 converts acetoacetate to acetone and carbon dioxide YP_001061031.1 identified by match to protein family HMM PF01569 YP_001061035.1 identified by match to protein family HMM PF04954; match to protein family HMM PF08021 YP_001061036.1 identified by match to protein family HMM PF03551 YP_001061039.1 identified by match to protein family HMM PF06114 YP_001061041.1 identified by match to protein family HMM PF01527 YP_001061042.1 identified by match to protein family HMM PF00665 YP_001061045.1 identified by match to protein family HMM PF00580 YP_001061049.1 identified by match to protein family HMM PF00067 YP_001061051.1 identified by match to protein family HMM PF01261; match to protein family HMM PF05114 YP_001061053.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055 YP_001061055.1 identified by match to protein family HMM PF01810 YP_001061056.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_001061057.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001061058.1 identified by match to protein family HMM PF00582 YP_001061063.1 identified by match to protein family HMM PF00171 YP_001061064.1 identified by match to protein family HMM PF03758 YP_001061068.1 identified by match to protein family HMM PF00132 YP_001061069.1 identified by match to protein family HMM PF00106 YP_001061070.2 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_001061071.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061072.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_001061073.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_001061074.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_001061075.1 Catalyzes the cycloisomerization of cis,cis-muconate YP_001061076.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR02427 YP_001061077.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425 YP_001061078.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001061080.1 identified by match to protein family HMM PF01810 YP_001061086.1 identified by match to protein family HMM PF07485 YP_001061087.1 identified by match to protein family HMM PF07690 YP_001061090.1 identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937 YP_001061094.1 identified by match to protein family HMM PF00127 YP_001061095.1 member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001061099.1 identified by match to protein family HMM PF03693 YP_001061104.1 identified by match to protein family HMM PF00816 YP_001061106.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001061107.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001061108.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001061118.1 identified by match to protein family HMM PF00165 YP_001061120.1 identified by match to protein family HMM PF04185; match to protein family HMM PF05506 YP_001061128.1 identified by match to protein family HMM PF00528 YP_001061130.1 identified by match to protein family HMM PF01547 YP_001061132.1 identified by match to protein family HMM PF00816 YP_001061133.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001061136.1 identified by match to protein family HMM PF05488 YP_001061137.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_001061138.1 identified by match to protein family HMM PF00085 YP_001061143.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891 YP_001061152.1 identified by match to protein family HMM TIGR03304 YP_001061155.2 identified by match to protein family HMM PF07437 YP_001061156.1 identified by match to protein family HMM PF00419 YP_001061157.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_001061158.1 identified by match to protein family HMM PF00577 YP_001061159.1 identified by match to protein family HMM PF00419 YP_001061161.1 identified by match to protein family HMM PF00691 YP_001061163.1 identified by match to protein family HMM PF05591 YP_001061164.1 identified by match to protein family HMM PF05943 YP_001061165.1 identified by match to protein family HMM PF05638 YP_001061167.1 identified by match to protein family HMM PF05936 YP_001061168.1 identified by match to protein family HMM PF00691 YP_001061169.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_001061172.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001061173.1 identified by match to protein family HMM PF05488 YP_001061174.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_001061176.1 identified by match to protein family HMM PF06812 YP_001061177.1 identified by match to protein family HMM PF06996 YP_001061178.1 identified by match to protein family HMM PF05947 YP_001061179.1 identified by match to protein family HMM PF07025 YP_001061180.1 identified by match to protein family HMM PF07024 YP_001061184.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001061186.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_001061193.1 identified by match to protein family HMM PF00196 YP_001061196.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001061197.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_001061199.1 identified by match to protein family HMM PF00535 YP_001061202.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488 YP_001061203.1 identified by match to protein family HMM PF01128 YP_001061205.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001061207.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_001061208.1 identified by match to protein family HMM PF00691 YP_001061209.1 identified by match to protein family HMM PF00072 YP_001061210.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 YP_001061211.1 identified by match to protein family HMM PF01584 YP_001061212.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001061213.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_001061214.1 identified by match to protein family HMM PF03975 YP_001061215.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01339 YP_001061216.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01339 YP_001061218.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01398 YP_001061219.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_001061220.1 identified by match to protein family HMM PF01311 YP_001061221.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402 YP_001061222.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_001061223.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480 YP_001061228.1 identified by match to protein family HMM PF02049 YP_001061229.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella YP_001061230.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001061231.1 binds to and inhibits the function of flagella specific ATPase FliI YP_001061232.1 involved in type III protein export during flagellum assembly YP_001061234.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195 YP_001061235.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_001061237.1 identified by match to protein family HMM PF02120 YP_001061239.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes YP_001061242.1 identified by match to protein family HMM PF01832 YP_001061243.1 identified by match to protein family HMM PF00460; match to protein family HMM TIGR01396 YP_001061244.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR01395 YP_001061245.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production YP_001061246.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559 YP_001061247.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02490 YP_001061248.1 makes up the distal portion of the flagellar basal body rod YP_001061249.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod YP_001061250.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_001061252.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_001061253.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; in Vibrio parahaemolyticus the protein in this cluster is associated with the lateral flagella YP_001061257.1 identified by match to protein family HMM PF00486 YP_001061264.1 identified by match to protein family HMM PF00196 YP_001061266.1 identified by match to protein family HMM PF00816 YP_001061267.1 identified by match to protein family HMM PF07690 YP_001061268.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_001061269.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_001061270.1 identified by match to protein family HMM PF02954; match to protein family HMM PF05651 YP_001061275.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00975 YP_001061276.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001061277.1 identified by match to protein family HMM PF07366; match to protein family HMM PF07858 YP_001061279.1 identified by match to protein family HMM PF00891 YP_001061280.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061282.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001061288.1 Enables the enzymatic reduction of mercuric ions to elemental mercury YP_001061290.1 identified by match to protein family HMM PF00532 YP_001061291.1 identified by match to protein family HMM PF02653 YP_001061292.1 identified by match to protein family HMM PF00005 YP_001061293.1 identified by match to protein family HMM PF00480 YP_001061295.1 identified by match to protein family HMM PF00686; match to protein family HMM PF00723 YP_001061297.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA YP_001061300.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001061301.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001061302.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061305.1 identified by match to protein family HMM PF00487 YP_001061308.1 identified by match to protein family HMM PF05433 YP_001061310.1 identified by match to protein family HMM PF00497 YP_001061311.1 identified by match to protein family HMM PF01266 YP_001061313.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061315.1 identified by match to protein family HMM PF00106 YP_001061321.1 identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180 YP_001061324.1 identified by match to protein family HMM PF05141 YP_001061325.1 identified by match to protein family HMM PF02668 YP_001061326.1 identified by match to protein family HMM PF03241 YP_001061327.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_001061328.1 identified by match to protein family HMM PF00107 YP_001061329.1 identified by match to protein family HMM PF02900 YP_001061330.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061333.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_001061334.1 identified by match to protein family HMM PF00691 YP_001061335.1 identified by match to protein family HMM PF05936 YP_001061338.1 identified by match to protein family HMM PF05638 YP_001061339.1 identified by match to protein family HMM PF05943 YP_001061340.1 identified by match to protein family HMM PF05591 YP_001061341.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001061343.1 identified by match to protein family HMM PF07024 YP_001061344.1 identified by match to protein family HMM PF07025 YP_001061345.1 identified by match to protein family HMM PF05947 YP_001061346.1 identified by match to protein family HMM PF06996 YP_001061347.2 identified by match to protein family HMM PF06812 YP_001061348.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001061349.1 identified by match to protein family HMM PF00805 YP_001061350.1 identified by match to protein family HMM PF00805 YP_001061358.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061359.1 identified by match to protein family HMM PF02525 YP_001061360.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_001061361.1 identified by match to protein family HMM PF00903 YP_001061368.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_001061369.1 identified by match to protein family HMM PF02682 YP_001061370.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001061371.1 identified by match to protein family HMM PF00364 YP_001061372.1 identified by match to protein family HMM PF03746 YP_001061373.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061377.1 identified by match to protein family HMM PF01804 YP_001061379.2 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01249 YP_001061385.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001061387.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM PF07728; match to protein family HMM TIGR02329 YP_001061388.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_001061389.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity YP_001061390.1 Catalyzes the conversion of citrate to isocitrate YP_001061391.1 identified by match to protein family HMM PF04303; match to protein family HMM TIGR02334 YP_001061392.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_001061396.1 identified by match to protein family HMM PF04055 YP_001061398.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203 YP_001061399.2 identified by match to protein family HMM PF07690 YP_001061400.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061401.1 identified by match to protein family HMM PF07221 YP_001061402.1 identified by match to protein family HMM PF02308 YP_001061407.1 identified by match to protein family HMM PF00583 YP_001061411.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_001061415.1 identified by match to protein family HMM PF06742; match to protein family HMM PF06863 YP_001061416.1 identified by match to protein family HMM PF05359 YP_001061418.1 identified by match to protein family HMM PF01663 YP_001061421.1 identified by match to protein family HMM PF00903 YP_001061424.1 identified by match to protein family HMM PF00494 YP_001061426.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061427.1 identified by match to protein family HMM PF07690 YP_001061428.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid YP_001061429.1 identified by match to protein family HMM PF00724 YP_001061433.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_001061434.1 identified by match to protein family HMM PF01654 YP_001061435.1 identified by match to protein family HMM PF01212 YP_001061436.1 specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_001061438.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_001061439.1 identified by match to protein family HMM PF03458 YP_001061440.1 with HmuTU is involved in the import of hemin YP_001061442.1 identified by match to protein family HMM PF01032 YP_001061444.1 identified by match to protein family HMM PF01497 YP_001061445.1 identified by match to protein family HMM PF05171 YP_001061446.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786 YP_001061450.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061452.1 identified by match to protein family HMM PF00528 YP_001061453.1 identified by match to protein family HMM PF00005 YP_001061455.1 identified by match to protein family HMM PF00528 YP_001061456.1 identified by match to protein family HMM TIGR00725 YP_001061459.1 identified by match to protein family HMM PF04198 YP_001061460.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_001061461.1 identified by match to protein family HMM PF00005 YP_001061462.1 identified by match to protein family HMM PF02653 YP_001061463.1 identified by match to protein family HMM PF00532 YP_001061464.1 identified by match to protein family HMM PF00106; similar to dehydrogenases with different specificities YP_001061465.1 identified by match to protein family HMM PF00107 YP_001061466.1 identified by match to protein family HMM PF02733 YP_001061467.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365 YP_001061472.1 identified by match to protein family HMM PF00267 YP_001061474.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_001061477.1 identified by match to protein family HMM PF04952 YP_001061478.1 identified by match to protein family HMM PF01757 YP_001061480.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096 YP_001061481.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061482.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001061484.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001061485.1 identified by match to protein family HMM PF00440 YP_001061486.1 identified by match to protein family HMM PF01614; match to protein family HMM TIGR02431 YP_001061488.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_001061491.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229 YP_001061492.1 identified by match to protein family HMM PF00891 YP_001061494.1 identified by match to protein family HMM PF00355 YP_001061499.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_001061500.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00700 YP_001061501.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001061502.1 identified by match to protein family HMM PF03600; match to protein family HMM PF03606 YP_001061503.1 identified by match to protein family HMM PF01614 YP_001061504.1 identified by match to protein family HMM PF05013 YP_001061507.1 identified by match to protein family HMM PF00892 YP_001061509.1 catalyzes the formation of selenophosphate from selenide and ATP YP_001061513.1 identified by match to protein family HMM PF06516 YP_001061517.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061518.1 identified by match to protein family HMM PF07859 YP_001061519.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_001061520.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_001061521.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001061524.1 identified by match to protein family HMM PF00375 YP_001061525.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001061526.1 identified by match to protein family HMM PF00583 YP_001061527.1 identified by match to protein family HMM PF03547 YP_001061529.1 identified by match to protein family HMM PF00501 YP_001061530.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_001061532.1 identified by match to protein family HMM PF00501 YP_001061533.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_001061535.1 identified by match to protein family HMM PF07991; match to protein family HMM TIGR00465 YP_001061536.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01746 YP_001061537.3 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation YP_001061538.1 identified by match to protein family HMM PF00202 YP_001061543.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801 YP_001061548.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472; match to protein family HMM PF04967 YP_001061550.1 identified by match to protein family HMM PF03180 YP_001061552.1 identified by match to protein family HMM PF00005 YP_001061553.1 identified by match to protein family HMM PF00528 YP_001061556.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_001061560.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001061561.1 identified by match to protein family HMM PF02754 YP_001061562.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273 YP_001061563.1 identified by match to protein family HMM PF02589 YP_001061564.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_001061566.1 identified by match to protein family HMM PF07681 YP_001061568.1 identified by match to protein family HMM PF07690 YP_001061570.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001061571.1 identified by match to protein family HMM PF02615 YP_001061572.1 identified by match to protein family HMM PF00171 YP_001061573.1 identified by match to protein family HMM PF00324 YP_001061574.1 identified by match to protein family HMM PF00701 YP_001061576.1 identified by match to protein family HMM PF05544 YP_001061577.1 identified by match to protein family HMM PF01266 YP_001061578.1 identified by match to protein family HMM PF00111; Similar to sarcosine oxidase and hydrogen cyanide synthase YP_001061579.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324; match to protein family HMM PF07992 YP_001061580.1 identified by match to protein family HMM PF00165 YP_001061582.1 identified by match to protein family HMM PF00903; match to protein family HMM PF01261 YP_001061584.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001061585.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_001061586.1 identified by match to protein family HMM PF07690 YP_001061587.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate YP_001061589.1 identified by match to protein family HMM PF01547 YP_001061590.1 identified by match to protein family HMM PF00005 YP_001061591.1 identified by match to protein family HMM PF00528 YP_001061592.1 identified by match to protein family HMM PF00528 YP_001061593.1 identified by match to protein family HMM PF01663; match to protein family HMM TIGR02335 YP_001061594.1 identified by match to protein family HMM PF00171 YP_001061596.1 identified by match to protein family HMM PF00376; match to protein family HMM TIGR02044 YP_001061599.1 identified by match to protein family HMM PF04378 YP_001061600.1 identified by match to protein family HMM PF00248 YP_001061601.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_001061603.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_001061605.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001061608.1 identified by match to protein family HMM PF03239 YP_001061610.1 identified by match to protein family HMM PF03928 YP_001061615.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_001061616.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061617.1 identified by match to protein family HMM PF02472 YP_001061618.1 identified by match to protein family HMM PF01618 YP_001061619.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_001061620.1 identified by match to protein family HMM PF04324 YP_001061621.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_001061622.1 identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754 YP_001061624.1 identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723 YP_001061625.1 identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645 YP_001061626.1 identified by match to protein family HMM PF00892 YP_001061628.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_001061630.1 identified by match to protein family HMM PF00474 YP_001061632.1 identified by match to protein family HMM PF01527 YP_001061633.1 identified by match to protein family HMM PF00665 YP_001061635.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001061639.1 identified by match to protein family HMM PF00665 YP_001061640.1 identified by match to protein family HMM PF01527 YP_001061642.1 identified by match to protein family HMM PF02371 YP_001061644.1 identified by match to protein family HMM PF02371 YP_001061648.1 identified by match to protein family HMM PF01476 YP_001061653.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_001061654.1 identified by match to protein family HMM PF06082 YP_001061659.1 identified by match to protein family HMM PF02563 YP_001061660.1 identified by match to protein family HMM PF02706 YP_001061661.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623 YP_001061662.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622 YP_001061663.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_001061664.1 identified by match to protein family HMM PF00583; match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212 YP_001061667.1 identified by match to protein family HMM PF00535 YP_001061668.1 identified by match to protein family HMM PF01075 YP_001061669.1 identified by match to protein family HMM PF01075 YP_001061670.1 identified by match to protein family HMM PF00132 YP_001061671.1 identified by match to protein family HMM PF00535 YP_001061676.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061677.1 identified by match to protein family HMM PF02678; match to protein family HMM PF07883 YP_001061678.1 identified by match to protein family HMM PF06912 YP_001061679.1 identified by match to protein family HMM PF00027; match to protein family HMM PF07992 YP_001061680.1 identified by match to protein family HMM PF00165 YP_001061681.1 identified by match to protein family HMM PF00165 YP_001061683.1 identified by match to protein family HMM PF07690 YP_001061685.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061686.1 identified by match to protein family HMM PF00857 YP_001061687.1 identified by match to protein family HMM PF07235 YP_001061688.1 identified by match to protein family HMM PF07969 YP_001061693.1 identified by match to protein family HMM PF00561 YP_001061698.1 identified by match to protein family HMM PF01613 YP_001061700.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; match to protein family HMM PF01212 YP_001061701.1 identified by match to protein family HMM PF01965 YP_001061703.1 identified by match to protein family HMM PF00768 YP_001061709.1 identified by match to protein family HMM PF02811 YP_001061712.1 identified by match to protein family HMM PF02321 YP_001061713.1 identified by match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409 YP_001061715.1 identified by match to protein family HMM PF04234 YP_001061716.1 identified by match to protein family HMM PF05425 YP_001061718.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001061719.1 identified by match to protein family HMM PF01266 YP_001061720.1 identified by match to protein family HMM PF01266 YP_001061722.1 identified by match to protein family HMM PF00528 YP_001061723.1 identified by match to protein family HMM PF00528 YP_001061724.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_001061725.1 identified by match to protein family HMM PF01547 YP_001061726.1 identified by match to protein family HMM PF00202 YP_001061727.1 identified by match to protein family HMM PF00120 YP_001061728.1 identified by match to protein family HMM PF07722 YP_001061732.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001061733.1 identified by match to protein family HMM PF00171 YP_001061734.1 catalyzes the formation of putrescine from agmatine YP_001061736.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001061737.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_001061738.1 identified by match to protein family HMM PF05232 YP_001061740.1 identified by match to protein family HMM PF02867; match to protein family HMM TIGR02504 YP_001061743.1 identified by match to protein family HMM PF00501 YP_001061747.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis YP_001061748.1 identified by match to protein family HMM PF00753 YP_001061749.1 identified by match to protein family HMM PF00441; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001061755.2 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR03140 YP_001061756.1 identified by match to protein family HMM PF00578 YP_001061758.1 identified by match to protein family HMM PF03067 YP_001061761.1 identified by match to protein family HMM PF00881 YP_001061764.1 identified by match to protein family HMM PF04169; match to protein family HMM PF04174 YP_001061765.1 identified by match to protein family HMM PF04168 YP_001061766.1 identified by match to protein family HMM PF01841 YP_001061768.1 identified by match to protein family HMM PF01841 YP_001061770.1 identified by match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174 YP_001061771.1 identified by match to protein family HMM PF01841 YP_001061772.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001061773.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_001061775.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001061776.1 identified by match to protein family HMM PF01965 YP_001061777.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212 YP_001061778.1 identified by match to protein family HMM PF02775 YP_001061779.1 identified by match to protein family HMM TIGR02320 YP_001061781.1 identified by match to protein family HMM TIGR00374 YP_001061782.1 identified by match to protein family HMM PF03171 YP_001061783.1 identified by match to protein family HMM PF01066 YP_001061784.1 identified by match to protein family HMM PF02550 YP_001061787.1 identified by match to protein family HMM PF06812 YP_001061788.1 identified by match to protein family HMM PF05591 YP_001061789.1 identified by match to protein family HMM PF05943 YP_001061790.1 identified by match to protein family HMM PF05638 YP_001061792.1 identified by match to protein family HMM PF05947 YP_001061794.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001061795.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001061796.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001061797.1 identified by match to protein family HMM PF00805 YP_001061802.1 identified by match to protein family HMM PF05936 YP_001061803.1 identified by match to protein family HMM PF00691 YP_001061804.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_001061812.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001061813.1 identified by match to protein family HMM TIGR01556 YP_001061814.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001061817.1 identified by match to protein family HMM PF00529 YP_001061820.1 identified by match to protein family HMM PF00251 YP_001061821.1 identified by match to protein family HMM PF02435 YP_001061823.1 identified by match to protein family HMM PF00532 YP_001061825.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR02819 YP_001061826.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001061827.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001061828.1 identified by match to protein family HMM PF01244 YP_001061829.1 identified by match to protein family HMM PF02830 YP_001061830.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_001061831.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_001061832.1 identified by match to protein family HMM PF00766 YP_001061834.1 identified by match to protein family HMM PF00355 YP_001061835.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_001061836.1 identified by match to protein family HMM PF04069 YP_001061837.1 identified by match to protein family HMM PF00324 YP_001061838.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_001061839.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061840.1 identified by match to protein family HMM PF00884 YP_001061841.1 identified by match to protein family HMM PF04069 YP_001061843.1 identified by match to protein family HMM PF00267 YP_001061844.1 identified by match to protein family HMM PF01546; match to protein family HMM PF04389 YP_001061845.1 identified by match to protein family HMM PF07504 YP_001061847.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001061849.1 identified by match to protein family HMM PF04069 YP_001061850.1 identified by match to protein family HMM PF05853 YP_001061851.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_001061853.1 identified by match to protein family HMM PF07859 YP_001061855.1 identified by match to protein family HMM PF00106 YP_001061859.1 identified by match to protein family HMM PF01266 YP_001061860.1 identified by match to protein family HMM PF01094 YP_001061862.1 identified by match to protein family HMM PF02653 YP_001061863.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine YP_001061864.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine YP_001061865.1 identified by match to protein family HMM PF00005 YP_001061868.1 identified by match to protein family HMM PF01551 YP_001061870.1 involved in the conversion of chorismate to salicylate YP_001061871.1 catalyzes the second reaction in the pyochelin biosynthetic pathway, the conversion of isochorismate to salicylate and pyruvate. YP_001061872.1 identified by match to protein family HMM PF00975 YP_001061873.1 identified by match to protein family HMM PF00501 YP_001061875.1 identified by match to protein family HMM PF00165 YP_001061876.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001061877.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM PF05403; match to protein family HMM TIGR01733 YP_001061878.1 identified by match to protein family HMM PF01408; match to protein family HMM TIGR01761 YP_001061879.1 identified by match to protein family HMM PF00005 YP_001061880.1 identified by match to protein family HMM PF00005 YP_001061882.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_001061884.1 identified by match to protein family HMM PF03929 YP_001061885.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR02718 YP_001061887.1 identified by match to protein family HMM PF00111 YP_001061889.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954 YP_001061896.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_001061897.1 identified by match to protein family HMM TIGR02594 YP_001061904.1 identified by match to protein family HMM PF01925 YP_001061905.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001061906.1 identified by match to protein family HMM PF00171 YP_001061907.1 identified by match to protein family HMM PF02668 YP_001061908.1 identified by match to protein family HMM PF02775 YP_001061912.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00561 YP_001061914.1 identified by match to protein family HMM PF01145 YP_001061915.1 identified by match to protein family HMM PF01957 YP_001061916.1 identified by match to protein family HMM PF00165 YP_001061917.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001061918.1 identified by match to protein family HMM PF00501 YP_001061919.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_001061920.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01692 YP_001061921.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001061922.1 identified by match to protein family HMM PF00378 YP_001061924.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001061925.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02687 YP_001061926.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_001061928.1 identified by match to protein family HMM PF00296 YP_001061931.1 identified by match to protein family HMM PF00445 YP_001061933.1 catalyzes the formation of glutamate from glutamine YP_001061935.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001061937.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001061938.3 identified by match to protein family HMM PF01103; match to protein family HMM PF01734; match to protein family HMM PF07244 YP_001061941.1 identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904 YP_001061943.1 identified by match to protein family HMM PF01966 YP_001061944.1 identified by match to protein family HMM PF06202 YP_001061946.1 identified by match to protein family HMM PF03936 YP_001061948.1 identified by match to protein family HMM PF00903 YP_001061950.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_001061951.1 identified by match to protein family HMM PF05988 YP_001061956.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001061957.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001061958.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001061962.1 identified by match to protein family HMM PF00581 YP_001061963.1 upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism YP_001061966.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_001061968.1 identified by match to protein family HMM PF04993 YP_001061969.1 identified by match to protein family HMM PF07298 YP_001061973.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue YP_001061974.1 identified by match to protein family HMM PF00450 YP_001061978.1 identified by match to protein family HMM TIGR01409 YP_001061987.1 identified by match to protein family HMM PF01752 YP_001061988.1 identified by match to protein family HMM PF00583 YP_001061989.1 identified by match to protein family HMM PF06224 YP_001061991.1 identified by match to protein family HMM PF07690 YP_001061993.3 identified by match to protein family HMM PF01204 YP_001061997.1 identified by match to protein family HMM PF00510 YP_001061999.1 identified by match to protein family HMM PF00196 YP_001062001.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_001062003.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_001062004.1 identified by match to protein family HMM PF00486 YP_001062005.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR01409 YP_001062006.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_001062007.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_001062012.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001062013.1 identified by match to protein family HMM PF08028 YP_001062017.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001062018.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001062019.1 identified by match to protein family HMM PF06629 YP_001062020.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993 YP_001062021.1 identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337 YP_001062022.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR02305 YP_001062023.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR02303 YP_001062024.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02299 YP_001062025.1 identified by match to protein family HMM PF02900; match to protein family HMM TIGR02298 YP_001062026.1 identified by match to protein family HMM PF02962 YP_001062027.1 identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312 YP_001062028.1 identified by match to protein family HMM PF03328; match to protein family HMM TIGR02311 YP_001062029.1 identified by match to protein family HMM PF00165 YP_001062030.1 identified by match to protein family HMM PF00107 YP_001062031.1 identified by match to protein family HMM PF00267 YP_001062033.1 identified by match to protein family HMM PF00005 YP_001062034.1 identified by match to protein family HMM PF00528 YP_001062035.1 identified by match to protein family HMM PF01547 YP_001062036.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001062037.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001062040.1 identified by match to protein family HMM PF03473; match to protein family HMM PF03476 YP_001062042.1 identified by match to protein family HMM PF00267 YP_001062045.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001062046.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_001062048.1 identified by match to protein family HMM PF04248 YP_001062049.1 identified by match to protein family HMM PF03781 YP_001062054.1 identified by match to protein family HMM PF05231 YP_001062057.1 identified by match to protein family HMM PF00440 YP_001062060.1 identified by match to protein family HMM PF01965 YP_001062062.1 identified by match to protein family HMM PF00724 YP_001062064.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_001062066.1 identified by match to protein family HMM PF01594 YP_001062068.1 identified by match to protein family HMM PF00106 YP_001062070.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001062074.1 identified by match to protein family HMM PF00027 YP_001062075.1 activates fatty acids by binding to coenzyme A YP_001062079.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001062080.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001062081.1 identified by match to protein family HMM PF00535; match to protein family HMM PF07238 YP_001062090.1 identified by match to protein family HMM PF07883 YP_001062094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001062095.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_001062096.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_001062099.1 identified by match to protein family HMM PF03583 YP_001062101.1 identified by match to protein family HMM PF00267 YP_001062102.1 identified by match to protein family HMM PF03640 YP_001062104.1 identified by match to protein family HMM PF00196 YP_001062105.1 identified by match to protein family HMM PF00324 YP_001062106.1 identified by match to protein family HMM PF03576 YP_001062107.1 identified by match to protein family HMM PF00328 YP_001062109.1 identified by match to protein family HMM PF04632 YP_001062110.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001062114.1 identified by match to protein family HMM PF00267 YP_001062115.1 identified by match to protein family HMM PF00903 YP_001062117.1 identified by match to protein family HMM PF02133 YP_001062118.1 identified by match to protein family HMM PF02954; match to protein family HMM PF07905 YP_001062119.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_001062120.1 identified by match to protein family HMM PF07690 YP_001062121.1 identified by match to protein family HMM PF05853 YP_001062122.1 identified by match to protein family HMM PF00106 YP_001062123.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001062125.1 identified by match to protein family HMM PF00654 YP_001062127.1 identified by match to protein family HMM TIGR01409 YP_001062130.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001062138.1 identified by match to protein family HMM PF01047 YP_001062139.1 identified by match to protein family HMM PF03466 YP_001062141.1 identified by match to protein family HMM PF03758 YP_001062143.1 identified by match to protein family HMM PF05899 YP_001062148.1 identified by match to protein family HMM PF01614 YP_001062149.1 identified by match to protein family HMM PF00532 YP_001062150.1 identified by match to protein family HMM PF00005 YP_001062151.1 identified by match to protein family HMM PF02653 YP_001062152.1 identified by match to protein family HMM PF04292 YP_001062154.1 identified by match to protein family HMM PF04909 YP_001062156.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001062157.1 identified by match to protein family HMM PF01557 YP_001062159.1 identified by match to protein family HMM PF00106 YP_001062165.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662; match to protein family HMM TIGR03304 YP_001062167.1 identified by match to protein family HMM PF00816 YP_001062168.1 identified by match to protein family HMM PF01614 YP_001062171.1 identified by match to protein family HMM PF00563 YP_001062173.1 identified by match to protein family HMM PF00440 YP_001062175.1 identified by match to protein family HMM PF01094 YP_001062176.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_001062179.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254 YP_001062181.1 identified by match to protein family HMM PF01037 YP_001062183.1 identified by match to protein family HMM PF00324 YP_001062184.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_001062190.1 identified by match to protein family HMM PF00583 YP_001062191.1 identified by match to protein family HMM PF03171 YP_001062197.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001062198.1 identified by match to protein family HMM PF00072 YP_001062199.2 identified by match to protein family HMM PF04509 YP_001062200.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073 YP_001062201.1 identified by match to protein family HMM PF01835 YP_001062206.1 identified by match to protein family HMM PF00133 YP_001062210.1 identified by match to protein family HMM PF02668 YP_001062212.1 identified by match to protein family HMM PF00266 YP_001062213.1 identified by match to protein family HMM PF01752 YP_001062216.1 associated with the biosynthesis repression of 4-hydroxy-2-alkylquinolines (HAQs) and HAQ-analogs, which act as extracellular signals that interact with quorum sensing YP_001062218.1 identified by match to protein family HMM PF01381; match to protein family HMM PF05899; match to protein family HMM PF07883 YP_001062225.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001062227.1 identified by match to protein family HMM PF00582 YP_001062228.1 identified by match to protein family HMM PF00582 YP_001062229.1 identified by match to protein family HMM PF00582 YP_001062230.1 identified by match to protein family HMM PF00582 YP_001062231.1 identified by match to protein family HMM PF00107 YP_001062235.1 identified by match to protein family HMM PF07690 YP_001062237.1 identified by match to protein family HMM PF00106 YP_001062241.1 identified by match to protein family HMM PF00324 YP_001062243.1 identified by match to protein family HMM PF01381 YP_001062244.1 identified by match to protein family HMM PF00816 YP_001062245.1 identified by match to protein family HMM PF08028 YP_001062253.1 identified by match to protein family HMM PF01156 YP_001062254.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_001062261.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196 YP_001062263.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001062266.1 identified by match to protein family HMM PF00248 YP_001062268.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001062270.1 identified by match to protein family HMM PF00196 YP_001062271.1 identified by match to protein family HMM PF00171 YP_001062272.1 identified by match to protein family HMM PF00202 YP_001062273.1 identified by match to protein family HMM PF00324 YP_001062275.1 identified by match to protein family HMM PF00165 YP_001062276.1 identified by match to protein family HMM PF00267; match to protein family HMM TIGR03304 YP_001062278.1 identified by match to protein family HMM PF01810 YP_001062279.1 identified by match to protein family HMM PF00583 YP_001062280.1 identified by match to protein family HMM PF00724 YP_001062284.1 identified by match to protein family HMM PF00267; match to protein family HMM TIGR03304 YP_001062285.1 identified by match to protein family HMM PF01272 YP_001062287.1 identified by match to protein family HMM PF00571 YP_001062288.1 identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505 YP_001062290.1 identified by match to protein family HMM PF00765 YP_001062292.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_001062293.1 identified by match to protein family HMM PF02308 YP_001062295.1 identified by match to protein family HMM PF00149 YP_001062296.1 identified by match to protein family HMM PF00881 YP_001062297.1 identified by match to protein family HMM PF03171 YP_001062298.1 identified by match to protein family HMM PF01614 YP_001062300.1 identified by match to protein family HMM PF00267 YP_001062302.1 identified by match to protein family HMM PF00355 YP_001062304.1 identified by match to protein family HMM PF00355 YP_001062305.1 member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria YP_001062306.1 identified by match to protein family HMM PF07883 YP_001062307.1 identified by match to protein family HMM PF00561 YP_001062308.1 identified by match to protein family HMM PF01614 YP_001062309.1 identified by match to protein family HMM PF00106 YP_001062310.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; C-terminal TPP-binding:Thiamine pyrophosphate enzyme, central region:Thiamine pyrophosphate enzyme, N-terminal TPP binding region YP_001062311.1 catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis YP_001062312.1 identified by match to protein family HMM PF00171 YP_001062313.1 identified by match to protein family HMM PF00903 YP_001062314.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001062315.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001062317.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662; match to protein family HMM TIGR03304 YP_001062318.1 identified by match to protein family HMM PF00691; match to protein family HMM PF04355 YP_001062321.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001062322.1 identified by match to protein family HMM PF01037 YP_001062324.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine YP_001062329.1 identified by match to protein family HMM PF00797 YP_001062330.1 identified by match to protein family HMM PF06475 YP_001062331.1 identified by match to protein family HMM PF02082 YP_001062332.1 identified by match to protein family HMM PF07992 YP_001062337.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001062338.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_001062339.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001062341.1 identified by match to protein family HMM PF00561 YP_001062343.1 identified by match to protein family HMM PF00106 YP_001062345.1 identified by match to protein family HMM PF07947 YP_001062347.1 identified by match to protein family HMM TIGR01728 YP_001062348.1 identified by match to protein family HMM PF00376 YP_001062349.1 identified by match to protein family HMM PF00583 YP_001062353.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001062355.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001062359.1 identified by match to protein family HMM PF01266; match to protein family HMM PF07992 YP_001062361.1 identified by match to protein family HMM PF02254; match to protein family HMM PF07885 YP_001062362.1 identified by match to protein family HMM PF00561 YP_001062365.1 identified by match to protein family HMM PF02627 YP_001062367.1 catalyzes the formation of L-proline from L-ornithine YP_001062368.1 identified by match to protein family HMM PF00756 YP_001062371.1 identified by match to protein family HMM PF00267 YP_001062374.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001062377.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_001062378.1 identified by match to protein family HMM PF00144 YP_001062381.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001062385.1 identified by match to protein family HMM PF00005 YP_001062386.1 identified by match to protein family HMM PF00005 YP_001062387.1 identified by match to protein family HMM PF00528 YP_001062388.1 identified by match to protein family HMM PF00528 YP_001062389.1 identified by match to protein family HMM PF00496 YP_001062390.1 catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis YP_001062398.1 identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646 YP_001062400.1 identified by match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_001062405.1 identified by match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601 YP_001062408.1 identified by match to protein family HMM PF00496 YP_001062410.1 identified by match to protein family HMM PF00190; match to protein family HMM PF07883 YP_001062411.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_001062413.1 identified by match to protein family HMM PF05360 YP_001062414.1 identified by match to protein family HMM PF05249 YP_001062415.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701 YP_001062417.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001062419.1 identified by match to protein family HMM TIGR03304 YP_001062420.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524 YP_001062423.1 identified by match to protein family HMM PF00082 YP_001062431.1 identified by match to protein family HMM PF00732; match to protein family HMM PF01266 YP_001062432.1 identified by match to protein family HMM PF00034 YP_001062433.1 identified by match to protein family HMM PF07681 YP_001062434.1 identified by match to protein family HMM PF00267 YP_001062437.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001062438.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001062439.1 identified by match to protein family HMM PF00005 YP_001062443.1 identified by match to protein family HMM PF04828 YP_001062449.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_001062454.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580 YP_001062455.1 identified by match to protein family HMM PF00072 YP_001062456.1 identified by match to protein family HMM PF04397 YP_001062458.1 identified by match to protein family HMM PF00199 YP_001062460.1 identified by match to protein family HMM PF00165 YP_001062461.1 identified by match to protein family HMM PF00355 YP_001062462.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001062463.1 involved in polyketide production YP_001062464.1 Acyl carrier proteins are involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; this ACP may be involved in the biosynthesis of lipopeptide antibiotics YP_001062465.1 involved in polyketide production YP_001062466.1 involved in polyketide synthesis YP_001062467.1 identified by match to protein family HMM PF01154 YP_001062471.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_001062472.1 identified by match to protein family HMM PF00999 YP_001062474.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01212; match to protein family HMM PF02801 YP_001062475.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801 YP_001062476.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM TIGR01733 YP_001062477.1 identified by match to protein family HMM PF00109; match to protein family HMM PF01212; match to protein family HMM PF02801 YP_001062478.1 identified by match to protein family HMM PF01266 YP_001062479.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001062482.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00654 YP_001062483.1 identified by match to protein family HMM PF01047 YP_001062484.2 identified by match to protein family HMM PF00571; match to protein family HMM PF04982 YP_001062485.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001062487.1 identified by match to protein family HMM PF01699 YP_001062488.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_001062490.1 identified by match to protein family HMM PF02517 YP_001062491.1 identified by match to protein family HMM PF01557 YP_001062493.1 identified by match to protein family HMM PF00165 YP_001062496.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_001062498.2 identified by match to protein family HMM PF04264 YP_001062499.1 identified by match to protein family HMM PF03640 YP_001062502.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_001062503.1 identified by match to protein family HMM PF04773 YP_001062505.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_001062506.1 identified by match to protein family HMM PF02653 YP_001062507.1 identified by match to protein family HMM PF02653 YP_001062508.1 identified by match to protein family HMM PF00005 YP_001062511.1 identified by match to protein family HMM PF04140 YP_001062513.1 identified by match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001062514.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001062519.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386 YP_001062520.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387 YP_001062521.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_001062522.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_001062523.1 identified by match to protein family HMM PF02321 YP_001062530.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis YP_001062531.1 identified by match to protein family HMM PF04073 YP_001062532.1 identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_001062536.1 identified by match to protein family HMM PF04352 YP_001062550.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001062554.1 identified by match to protein family HMM PF05175 YP_001062557.1 identified by match to protein family HMM TIGR00097 YP_001062558.1 identified by match to protein family HMM PF01209 YP_001062559.1 identified by match to protein family HMM PF00303 YP_001062561.1 identified by match to protein family HMM PF00293 YP_001062565.1 identified by match to protein family HMM PF02668 YP_001062566.1 identified by match to protein family HMM PF00892 YP_001062567.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905 YP_001062568.1 identified by match to protein family HMM PF01694 YP_001062570.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_001062576.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_001062577.1 identified by match to protein family HMM PF00873 YP_001062578.2 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001062580.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_001062581.1 identified by match to protein family HMM PF00400 YP_001062583.1 identified by match to protein family HMM PF03781 YP_001062584.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR00326 YP_001062585.1 identified by match to protein family HMM PF00891 YP_001062586.1 identified by match to protein family HMM PF00903 YP_001062587.1 identified by match to protein family HMM PF07690 YP_001062591.1 identified by match to protein family HMM PF00196; match to protein family HMM PF04967 YP_001062594.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_001062596.1 identified by match to protein family HMM PF03551 YP_001062597.1 identified by match to protein family HMM PF02110 YP_001062600.1 identified by match to protein family HMM PF02668 YP_001062601.1 identified by match to protein family HMM PF03547 YP_001062606.1 identified by match to protein family HMM PF00582 YP_001062608.1 identified by match to protein family HMM PF01058 YP_001062610.1 identified by match to protein family HMM PF00361 YP_001062612.1 identified by match to protein family HMM PF00146 YP_001062613.1 identified by match to protein family HMM PF00361 YP_001062615.1 identified by match to protein family HMM PF06912 YP_001062617.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_001062618.1 identified by match to protein family HMM PF01564 YP_001062621.1 identified by match to protein family HMM PF07690 YP_001062622.1 identified by match to protein family HMM PF00639 YP_001062623.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_001062624.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_001062625.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660 YP_001062626.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580 YP_001062629.1 identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229; match to protein family HMM TIGR01409 YP_001062630.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001062631.1 identified by match to protein family HMM PF00072 YP_001062632.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001062634.1 identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976 YP_001062636.1 identified by match to protein family HMM PF02668 YP_001062637.1 identified by match to protein family HMM PF07690 YP_001062638.1 identified by match to protein family HMM PF00975 YP_001062639.1 identified by match to protein family HMM PF00583 YP_001062641.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801 YP_001062642.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001062643.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801 YP_001062644.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801 YP_001062645.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001062646.1 identified by match to protein family HMM PF01432 YP_001062648.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_001062650.1 identified by match to protein family HMM PF00999 YP_001062654.1 identified by match to protein family HMM PF00765 YP_001062655.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01733 YP_001062656.1 identified by match to protein family HMM PF00550 YP_001062657.1 identified by match to protein family HMM PF05721; match to protein family HMM TIGR01762 YP_001062664.1 identified by match to protein family HMM PF00550 YP_001062665.1 identified by match to protein family HMM PF00501 YP_001062666.1 identified by match to protein family HMM PF00296 YP_001062669.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001062670.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733 YP_001062671.1 identified by match to protein family HMM PF02668 YP_001062672.1 identified by match to protein family HMM PF00109; match to protein family HMM PF00202; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF02801 YP_001062677.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001062678.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_001062679.1 identified by match to protein family HMM PF07883 YP_001062680.1 identified by match to protein family HMM PF08085 YP_001062682.1 catalyzes the conversion of carbamoyl phosphate and aspartate to form N-carbamoyl aspartate YP_001062683.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_001062685.1 identified by match to protein family HMM PF03171 YP_001062687.1 identified by match to protein family HMM PF01527 YP_001062688.1 identified by match to protein family HMM PF05488 YP_001062693.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_001062694.1 identified by match to protein family HMM PF02798 YP_001062697.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_001062705.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001062707.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_001062709.1 identified by match to protein family HMM PF00532 YP_001062710.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001062713.2 identified by match to protein family HMM TIGR02276 YP_001062714.1 identified by match to protein family HMM PF01266 YP_001062715.1 identified by match to protein family HMM PF00348 YP_001062716.2 identified by match to protein family HMM PF03936 YP_001062718.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02254 YP_001062726.1 identified by match to protein family HMM PF06983 YP_001062727.1 identified by match to protein family HMM PF01544 YP_001062729.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220 YP_001062730.1 identified by match to protein family HMM PF07690 YP_001062734.1 identified by match to protein family HMM PF01547 YP_001062735.1 identified by match to protein family HMM PF00528 YP_001062736.1 identified by match to protein family HMM PF00528 YP_001062737.1 identified by match to protein family HMM PF00107 YP_001062738.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_001062739.1 identified by match to protein family HMM PF00165 YP_001062740.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_001062743.1 identified by match to protein family HMM PF00144; match to protein family HMM PF00768 YP_001062745.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_001062747.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00384; match to protein family HMM PF00667; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_001062748.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378 YP_001062749.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374 YP_001062750.1 identified by match to protein family HMM PF07690 YP_001062753.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469 YP_001062754.1 identified by match to protein family HMM PF00072; match to protein family HMM PF03861 YP_001062757.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_001062763.1 identified by match to protein family HMM PF00850; similar to yeast histone deacetylase and acetoin utilization protein YP_001062764.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_001062765.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001062766.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001062769.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001062770.1 identified by match to protein family HMM PF00106 YP_001062771.1 identified by match to protein family HMM PF02515 YP_001062773.1 identified by match to protein family HMM PF00107 YP_001062774.1 identified by match to protein family HMM PF00465 YP_001062782.1 identified by match to protein family HMM PF05650 YP_001062783.1 identified by match to protein family HMM PF00691 YP_001062786.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001062788.1 identified by match to protein family HMM PF03621 YP_001062789.1 identified by match to protein family HMM PF07690 YP_001062790.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801; match to protein family HMM TIGR01733 YP_001062792.1 identified by match to protein family HMM PF00550 YP_001062793.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_001062794.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_001062795.1 identified by match to protein family HMM PF00501 YP_001062797.1 identified by match to protein family HMM PF04545 YP_001062800.1 identified by match to protein family HMM PF01205 YP_001062801.1 identified by match to protein family HMM PF00892 YP_001062803.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593 YP_001062804.1 identified by match to protein family HMM PF00440 YP_001062805.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_001062808.1 identified by match to protein family HMM PF03976 YP_001062810.1 identified by match to protein family HMM PF03922 YP_001062813.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412 YP_001062817.1 identified by match to protein family HMM PF02321 YP_001062818.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066 YP_001062824.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001062827.1 identified by match to protein family HMM PF00324 YP_001062830.1 identified by match to protein family HMM PF04946 YP_001062832.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_001062834.1 identified by match to protein family HMM PF01596 YP_001062835.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001062839.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR02424 YP_001062840.1 identified by match to protein family HMM PF00775; match to protein family HMM TIGR02422 YP_001062841.1 identified by match to protein family HMM PF00775; match to protein family HMM TIGR02423 YP_001062843.1 identified by match to protein family HMM PF04951 YP_001062844.1 identified by match to protein family HMM PF03576 YP_001062845.1 identified by match to protein family HMM PF00528 YP_001062846.1 identified by match to protein family HMM PF00528 YP_001062848.1 identified by match to protein family HMM PF00496 YP_001062850.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_001062851.1 identified by match to protein family HMM PF01112 YP_001062852.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001062854.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_001062855.1 identified by match to protein family HMM PF00144 YP_001062858.1 identified by match to protein family HMM PF04185 YP_001062864.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_001062865.1 identified by match to protein family HMM PF00892 YP_001062866.1 identified by match to protein family HMM PF07973 YP_001062868.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_001062869.1 identified by match to protein family HMM PF07045 YP_001062873.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_001062875.1 catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate YP_001062876.1 identified by match to protein family HMM PF01037 YP_001062878.1 identified by match to protein family HMM PF01936 YP_001062879.1 identified by match to protein family HMM PF07690 YP_001062880.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001062881.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001062882.1 identified by match to protein family HMM PF04909 YP_001062884.1 identified by match to protein family HMM PF00149 YP_001062885.1 identified by match to protein family HMM PF03150 YP_001062887.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_001062892.1 identified by match to protein family HMM PF00583 YP_001062893.1 identified by match to protein family HMM PF04143 YP_001062894.1 identified by match to protein family HMM PF04143 YP_001062895.1 identified by match to protein family HMM PF01022 YP_001062898.1 identified by match to protein family HMM PF01292 YP_001062899.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979 YP_001062902.1 identified by match to protein family HMM PF01381 YP_001062903.1 identified by match to protein family HMM PF00132 YP_001062904.1 identified by match to protein family HMM PF00581 YP_001062906.1 identified by match to protein family HMM PF00326; match to protein family HMM PF02897 YP_001062909.1 identified by match to protein family HMM PF00529 YP_001062911.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001062912.1 identified by match to protein family HMM TIGR01556 YP_001062913.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001062918.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes YP_001062919.1 catalyzes the formation of betaine from betaine aldehyde YP_001062920.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_001062923.1 identified by match to protein family HMM PF05853 YP_001062926.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001062927.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229 YP_001062928.1 identified by match to protein family HMM PF00072 YP_001062929.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229 YP_001062931.1 identified by match to protein family HMM PF02566 YP_001062932.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001062939.1 identified by match to protein family HMM PF00313 YP_001062942.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001062945.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526 YP_001062946.1 identified by match to protein family HMM PF04268 YP_001062947.1 identified by match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372 YP_001062948.1 identified by match to protein family HMM PF04267 YP_001062949.1 identified by match to protein family HMM PF01266; match to protein family HMM TIGR01373 YP_001062950.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_001062951.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001062953.1 identified by match to protein family HMM PF04337 YP_001062958.1 identified by match to protein family HMM PF07300 YP_001062960.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_001062961.1 identified by match to protein family HMM PF01654 YP_001062962.1 identified by match to protein family HMM PF03713 YP_001062964.1 identified by match to protein family HMM PF02308 YP_001062966.1 identified by match to protein family HMM PF00614 YP_001062967.1 identified by match to protein family HMM PF03372 YP_001062970.1 identified by match to protein family HMM PF00639 YP_001062980.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 YP_001062982.1 identified by match to protein family HMM PF00165 YP_001062983.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401 YP_001062984.1 identified by match to protein family HMM TIGR02559 YP_001062985.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546 YP_001062986.1 identified by match to protein family HMM TIGR02499 YP_001062987.1 identified by match to protein family HMM TIGR02560 YP_001062988.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544 YP_001062989.1 identified by match to protein family HMM TIGR02558 YP_001062990.1 identified by match to protein family HMM TIGR02561 YP_001062991.1 identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404 YP_001062992.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 YP_001062993.1 identified by match to protein family HMM TIGR02557 YP_001062994.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551 YP_001062995.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response YP_001062996.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403 YP_001063002.1 identified by match to protein family HMM PF05932 YP_001063005.1 identified by match to protein family HMM PF07883 YP_001063006.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001063007.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001063008.1 identified by match to protein family HMM PF03446 YP_001063009.1 identified by match to protein family HMM PF07005 YP_001063010.1 identified by match to protein family HMM PF00596 YP_001063011.1 identified by match to protein family HMM PF07690 YP_001063012.1 identified by match to protein family HMM PF01261 YP_001063013.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001063014.1 identified by match to protein family HMM PF05118 YP_001063017.1 identified by match to protein family HMM PF05118 YP_001063019.1 identified by match to protein family HMM PF04069 YP_001063020.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001063021.1 identified by match to protein family HMM PF00528 YP_001063022.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_001063024.1 identified by match to protein family HMM PF03358 YP_001063031.1 identified by match to protein family HMM PF00903 YP_001063032.1 identified by match to protein family HMM PF01451 YP_001063033.1 identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832 YP_001063037.2 identified by match to protein family HMM PF05658; match to protein family HMM PF05662 YP_001063039.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_001063043.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05662; match to protein family HMM TIGR03304 YP_001063048.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_001063049.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001063050.1 identified by match to protein family HMM PF01039 YP_001063051.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001063052.1 identified by match to protein family HMM PF00440 YP_001063056.1 identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732 YP_001063058.1 identified by match to protein family HMM PF00278; match to protein family HMM PF00355; match to protein family HMM PF02784 YP_001063060.1 identified by match to protein family HMM PF02373 YP_001063065.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001063066.1 identified by match to protein family HMM PF00583 YP_001063068.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001063069.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001063073.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00970; match to protein family HMM PF03929 YP_001063074.1 identified by match to protein family HMM PF02424 YP_001063075.1 identified by match to protein family HMM PF00171 YP_001063076.1 identified by match to protein family HMM PF00155 YP_001063079.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063080.1 identified by match to protein family HMM TIGR01552 YP_001063081.1 identified by match to protein family HMM PF01266 YP_001063082.1 identified by match to protein family HMM PF00440 YP_001063083.1 identified by match to protein family HMM PF00614 YP_001063085.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220 YP_001063087.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR01409 YP_001063089.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125 YP_001063090.1 identified by match to protein family HMM PF00392 YP_001063091.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_001063092.1 identified by match to protein family HMM PF00107 YP_001063094.1 identified by match to protein family HMM PF00892 YP_001063095.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001063096.1 identified by match to protein family HMM PF00440 YP_001063097.1 identified by match to protein family HMM PF06792 YP_001063101.1 identified by match to protein family HMM PF00034; match to protein family HMM PF00127; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR02376 YP_001063102.1 identified by match to protein family HMM PF03781 YP_001063103.1 identified by match to protein family HMM PF02630 YP_001063109.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510 YP_001063112.1 identified by match to protein family HMM PF05658; match to protein family HMM PF05662; match to protein family HMM TIGR03304 YP_001063114.1 identified by match to protein family HMM PF06812 YP_001063115.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001063116.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001063117.1 identified by match to protein family HMM PF05591 YP_001063118.1 identified by match to protein family HMM PF05943 YP_001063120.1 identified by match to protein family HMM PF07025 YP_001063121.1 identified by match to protein family HMM PF05947 YP_001063122.1 identified by match to protein family HMM PF06996 YP_001063123.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001063124.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001063125.1 identified by match to protein family HMM PF00805 YP_001063126.1 identified by match to protein family HMM PF00805 YP_001063130.1 identified by match to protein family HMM PF05936 YP_001063142.1 identified by match to protein family HMM PF00165 YP_001063145.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001063146.1 identified by match to protein family HMM PF05932 YP_001063150.1 identified by match to protein family HMM PF01464 YP_001063153.1 identified by match to protein family HMM TIGR02553 YP_001063154.1 identified by match to protein family HMM PF00816 YP_001063155.1 identified by match to protein family HMM TIGR02101 YP_001063156.1 identified by match to protein family HMM PF03518 YP_001063157.1 identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552 YP_001063158.1 Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins YP_001063159.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401 YP_001063160.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403 YP_001063161.1 part of a type III secretory system probably involved in invasion into eukaryotic cells YP_001063162.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551 YP_001063165.1 Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase YP_001063167.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 YP_001063168.1 identified by match to protein family HMM PF02523; match to protein family HMM TIGR02511; match to protein family HMM TIGR02568 YP_001063169.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 YP_001063170.1 identified by match to protein family HMM PF00165 YP_001063173.1 identified by match to protein family HMM TIGR02554 YP_001063174.1 identified by match to protein family HMM TIGR02105 YP_001063176.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544 YP_001063177.1 identified by match to protein family HMM TIGR02555 YP_001063178.1 identified by match to protein family HMM TIGR02499 YP_001063181.1 identified by match to protein family HMM PF00486 YP_001063185.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF07504 YP_001063187.1 identified by match to protein family HMM PF01047 YP_001063188.1 identified by match to protein family HMM PF00903 YP_001063190.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001063192.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063193.1 identified by match to protein family HMM PF01070 YP_001063194.1 identified by match to protein family HMM PF00450 YP_001063197.1 identified by match to protein family HMM PF01810 YP_001063198.1 identified by match to protein family HMM PF01037 YP_001063201.1 identified by match to protein family HMM PF01384 YP_001063205.1 identified by match to protein family HMM PF00501 YP_001063209.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472; match to protein family HMM PF04967 YP_001063210.1 identified by match to protein family HMM PF00765 YP_001063212.1 identified by match to protein family HMM PF00724 YP_001063214.1 identified by match to protein family HMM PF00528 YP_001063215.1 identified by match to protein family HMM PF00005 YP_001063216.1 identified by match to protein family HMM PF04069; match to protein family HMM TIGR01729 YP_001063217.1 catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers YP_001063220.1 identified by match to protein family HMM PF00535; match to protein family HMM PF07238; match to protein family HMM TIGR03030 YP_001063224.1 identified by match to protein family HMM PF00515; match to protein family HMM PF05420; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_001063225.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans YP_001063226.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP) YP_001063230.1 identified by match to protein family HMM PF01381 YP_001063231.1 identified by match to protein family HMM PF07804; match to protein family HMM PF07805 YP_001063236.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063237.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_001063243.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 YP_001063244.1 identified by match to protein family HMM TIGR02532 YP_001063247.1 identified by match to protein family HMM PF00482 YP_001063248.1 identified by match to protein family HMM PF00437 YP_001063249.1 identified by match to protein family HMM TIGR03021 YP_001063251.1 identified by match to protein family HMM PF00263; match to protein family HMM PF07655; match to protein family HMM TIGR02520 YP_001063253.1 identified by match to protein family HMM PF00437 YP_001063255.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001063256.1 identified by match to protein family HMM PF02518 YP_001063264.1 identified by match to protein family HMM PF00165 YP_001063271.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403 YP_001063272.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response YP_001063273.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551 YP_001063274.1 identified by match to protein family HMM TIGR02557 YP_001063275.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 YP_001063276.1 identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404 YP_001063277.1 identified by match to protein family HMM TIGR02561 YP_001063278.1 identified by match to protein family HMM TIGR02558 YP_001063279.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544 YP_001063280.1 identified by match to protein family HMM TIGR02560 YP_001063281.1 identified by match to protein family HMM TIGR02499 YP_001063282.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546 YP_001063283.1 identified by match to protein family HMM TIGR02559 YP_001063284.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401 YP_001063287.1 identified by match to protein family HMM PF02668 YP_001063288.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733 YP_001063290.1 identified by match to protein family HMM PF00202; match to protein family HMM PF07690; match to protein family HMM TIGR00709 YP_001063296.1 catalyzes the formation of acetate from pyruvate YP_001063297.1 identified by match to protein family HMM PF02550 YP_001063298.1 identified by match to protein family HMM PF01575 YP_001063299.1 identified by match to protein family HMM PF03328 YP_001063300.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063303.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063304.1 identified by match to protein family HMM PF07690 YP_001063306.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001063308.1 identified by match to protein family HMM PF00072 YP_001063311.1 identified by match to protein family HMM PF00652 YP_001063314.1 identified by match to protein family HMM PF01734 YP_001063317.1 identified by match to protein family HMM PF00067; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_001063319.1 identified by match to protein family HMM PF07690 YP_001063321.1 identified by match to protein family HMM PF00933 YP_001063322.1 identified by match to protein family HMM PF01915 YP_001063326.1 identified by match to protein family HMM PF01425 YP_001063329.1 identified by match to protein family HMM PF00959 YP_001063360.1 identified by match to protein family HMM PF00717 YP_001063371.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913 YP_001063378.1 identified by match to protein family HMM PF01555 YP_001063383.1 identified by match to protein family HMM PF05930 YP_001063384.1 identified by match to protein family HMM PF00589 YP_001063385.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00475 YP_001063386.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_001063387.1 identified by match to protein family HMM PF04216; match to protein family HMM TIGR01562 YP_001063388.1 identified by match to protein family HMM TIGR01583 YP_001063389.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01582 YP_001063390.1 identified by match to protein family HMM PF01568; match to protein family HMM TIGR01553 YP_001063394.1 identified by match to protein family HMM PF02698 YP_001063395.1 identified by match to protein family HMM TIGR01409 YP_001063396.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001063400.1 identified by match to protein family HMM PF00296 YP_001063402.1 identified by match to protein family HMM PF00497 YP_001063403.1 identified by match to protein family HMM PF00583 YP_001063406.1 identified by match to protein family HMM PF04952 YP_001063408.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_001063410.1 identified by match to protein family HMM PF00267 YP_001063413.1 identified by match to protein family HMM PF00216 YP_001063414.1 identified by match to protein family HMM PF01757 YP_001063416.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_001063420.1 identified by match to protein family HMM PF01757 YP_001063421.1 identified by match to protein family HMM PF00534 YP_001063422.1 identified by match to protein family HMM PF01943 YP_001063427.1 identified by match to protein family HMM PF01757 YP_001063428.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM TIGR01472 YP_001063429.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001063430.1 identified by match to protein family HMM PF07883 YP_001063431.1 catalyzes the conversion of O-succinylhomoserine into homocysteine YP_001063432.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_001063433.1 identified by match to protein family HMM PF02674 YP_001063434.1 identified by match to protein family HMM PF05036 YP_001063435.2 identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499 YP_001063436.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_001063437.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_001063438.1 identified by match to protein family HMM PF01555 YP_001063439.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001063440.2 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_001063441.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001063443.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_001063445.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001063446.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_001063447.1 identified by match to protein family HMM PF08085 YP_001063448.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_001063455.1 identified by match to protein family HMM PF01037 YP_001063456.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1 YP_001063457.1 identified by match to protein family HMM PF07350 YP_001063459.1 identified by match to protein family HMM PF00903 YP_001063460.1 identified by match to protein family HMM PF00165 YP_001063461.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_001063462.1 identified by match to protein family HMM PF03937 YP_001063463.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_001063464.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001063465.1 identified by match to protein family HMM PF01127; match to protein family HMM TIGR02968 YP_001063466.1 identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970 YP_001063467.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001063468.1 catalyzes the oxidation of malate to oxaloacetate YP_001063469.1 identified by match to protein family HMM PF03328 YP_001063471.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C YP_001063472.1 catalyzes the conversion of citrate to isocitrate YP_001063474.1 identified by match to protein family HMM PF05860; match to protein family HMM TIGR01901 YP_001063475.2 identified by match to protein family HMM PF03865 YP_001063479.1 identified by match to protein family HMM PF00034 YP_001063484.1 identified by match to protein family HMM PF00264 YP_001063490.1 identified by match to protein family HMM PF00082 YP_001063492.1 identified by match to protein family HMM PF00528 YP_001063493.1 identified by match to protein family HMM PF00528 YP_001063495.1 identified by match to protein family HMM PF01547 YP_001063496.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_001063497.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001063498.1 acts as a molecular chaperone to fold and export lipase A YP_001063499.1 identified by match to protein family HMM PF00561; match to protein family HMM PF05057; match to protein family HMM PF07819 YP_001063501.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01778 YP_001063504.1 identified by match to protein family HMM PF01292 YP_001063506.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_001063507.1 identified by match to protein family HMM PF07883 YP_001063509.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_001063511.1 identified by match to protein family HMM PF06080 YP_001063512.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_001063513.1 identified by match to protein family HMM PF02133 YP_001063518.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_001063519.1 synthesizes RNA primers at the replication forks YP_001063521.1 identified by match to protein family HMM PF02637 YP_001063522.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001063523.1 identified by match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_001063524.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001063526.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_001063527.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001063528.1 identified by match to protein family HMM PF00348 YP_001063529.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_001063530.1 identified by match to protein family HMM PF00355 YP_001063531.1 identified by match to protein family HMM PF01609 YP_001063532.1 identified by match to protein family HMM PF00581 YP_001063533.1 identified by match to protein family HMM PF01738; match to protein family HMM TIGR01409 YP_001063538.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001063539.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_001063540.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_001063545.1 identified by match to protein family HMM PF04463 YP_001063546.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_001063549.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine YP_001063552.1 identified by match to protein family HMM PF01047 YP_001063553.1 identified by match to protein family HMM PF02566 YP_001063555.1 identified by match to protein family HMM TIGR01840 YP_001063556.1 identified by match to protein family HMM PF01569 YP_001063557.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_001063558.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141 YP_001063559.1 identified by match to protein family HMM PF00005 YP_001063562.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03459; match to protein family HMM TIGR00637; match to protein family HMM TIGR00638 YP_001063563.1 identified by match to protein family HMM PF05235 YP_001063564.1 identified by match to protein family HMM PF01361 YP_001063565.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063566.1 identified by match to protein family HMM PF00892 YP_001063567.1 identified by match to protein family HMM PF00512 YP_001063568.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_001063569.1 identified by match to protein family HMM PF02581 YP_001063570.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922 YP_001063572.1 identified by match to protein family HMM PF04073 YP_001063573.1 identified by match to protein family HMM PF01070 YP_001063577.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_001063581.1 identified by match to protein family HMM PF01810 YP_001063582.1 identified by match to protein family HMM PF00190; match to protein family HMM PF07883 YP_001063583.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate YP_001063584.1 catalyzes the formation of acetyl-CoA from acetalaldehyde YP_001063585.1 identified by match to protein family HMM PF00975 YP_001063586.1 identified by match to protein family HMM PF01063; match to protein family HMM TIGR01122 YP_001063588.1 identified by match to protein family HMM PF00975 YP_001063589.1 identified by match to protein family HMM PF05721; match to protein family HMM TIGR01762 YP_001063590.1 identified by match to protein family HMM PF00550 YP_001063591.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01733 YP_001063596.1 identified by match to protein family HMM PF01022 YP_001063599.1 identified by match to protein family HMM PF07077 YP_001063600.1 identified by match to protein family HMM PF00149 YP_001063605.1 identified by match to protein family HMM PF00254 YP_001063606.1 identified by match to protein family HMM PF00165 YP_001063607.1 identified by match to protein family HMM PF00534 YP_001063608.1 identified by match to protein family HMM PF00534 YP_001063611.1 identified by match to protein family HMM PF00535 YP_001063612.1 identified by match to protein family HMM PF02706 YP_001063613.1 identified by match to protein family HMM PF02563 YP_001063614.1 identified by match to protein family HMM PF01451 YP_001063615.1 identified by match to protein family HMM PF00984; match to protein family HMM PF02558; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_001063616.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03023; match to protein family HMM TIGR03025 YP_001063618.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_001063622.1 identified by match to protein family HMM PF02915 YP_001063623.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510 YP_001063625.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_001063627.1 identified by match to protein family HMM PF04946 YP_001063628.1 identified by match to protein family HMM PF04946 YP_001063630.1 identified by match to protein family HMM PF03372 YP_001063632.1 identified by match to protein family HMM PF05957 YP_001063635.1 identified by match to protein family HMM PF01594 YP_001063637.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR03304 YP_001063639.1 identified by match to protein family HMM PF07690 YP_001063640.1 identified by match to protein family HMM PF00107 YP_001063641.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001063643.1 identified by match to protein family HMM PF00106 YP_001063644.1 identified by match to protein family HMM PF00300 YP_001063645.1 identified by match to protein family HMM PF01636 YP_001063646.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001063648.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063649.1 identified by match to protein family HMM PF02566 YP_001063655.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413 YP_001063657.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001063658.1 identified by match to protein family HMM PF01965 YP_001063659.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001063662.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001063664.1 identified by match to protein family HMM PF05433 YP_001063668.1 identified by match to protein family HMM PF02517 YP_001063669.1 identified by match to protein family HMM PF00654 YP_001063671.1 identified by match to protein family HMM TIGR01493 YP_001063674.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_001063675.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_001063676.1 identified by match to protein family HMM PF01584 YP_001063677.1 identified by match to protein family HMM PF00515; match to protein family HMM PF01739; match to protein family HMM PF07719 YP_001063678.1 identified by match to protein family HMM PF01584 YP_001063679.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001063681.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001063687.1 identified by match to protein family HMM PF00171 YP_001063688.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis YP_001063690.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831 YP_001063691.1 identified by match to protein family HMM PF04286 YP_001063692.1 identified by match to protein family HMM PF00583 YP_001063694.1 identified by match to protein family HMM PF00614 YP_001063695.1 identified by match to protein family HMM PF01230 YP_001063696.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001063697.1 identified by match to protein family HMM PF00355 YP_001063698.1 identified by match to protein family HMM PF00866 YP_001063699.1 identified by match to protein family HMM PF00355; match to protein family HMM PF00848 YP_001063700.1 identified by match to protein family HMM PF00165 YP_001063701.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063702.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR02534 YP_001063703.1 identified by match to protein family HMM PF00775; match to protein family HMM PF04444; match to protein family HMM TIGR02439 YP_001063704.1 identified by match to protein family HMM PF02426 YP_001063705.1 identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847 YP_001063706.1 identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842 YP_001063707.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843 YP_001063708.1 identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433 YP_001063711.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_001063713.1 identified by match to protein family HMM PF00165 YP_001063714.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063715.1 identified by match to protein family HMM PF01370 YP_001063716.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063717.1 identified by match to protein family HMM PF00355; match to protein family HMM PF00848 YP_001063718.1 identified by match to protein family HMM PF00866 YP_001063719.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08021 YP_001063720.1 catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol YP_001063721.1 identified by match to protein family HMM PF07859 YP_001063723.1 identified by match to protein family HMM PF01047 YP_001063724.1 identified by match to protein family HMM PF00857 YP_001063728.1 identified by match to protein family HMM PF02012 YP_001063729.1 identified by match to protein family HMM PF00324 YP_001063734.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_001063736.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01829 YP_001063739.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001063740.1 identified by match to protein family HMM TIGR02822 YP_001063748.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_001063751.1 identified by match to protein family HMM PF04972 YP_001063755.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_001063756.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001063757.1 identified by match to protein family HMM PF01522 YP_001063758.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001063759.1 identified by match to protein family HMM PF00529 YP_001063760.1 identified by match to protein family HMM PF00005 YP_001063761.1 identified by match to protein family HMM PF02687 YP_001063763.1 identified by match to protein family HMM PF00582 YP_001063765.1 identified by match to protein family HMM PF00440 YP_001063766.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001063767.1 identified by match to protein family HMM PF00529 YP_001063768.1 identified by match to protein family HMM PF00005; match to protein family HMM PF01061 YP_001063769.1 identified by match to protein family HMM PF01061 YP_001063770.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_001063772.1 identified by match to protein family HMM PF00015 YP_001063776.1 identified by match to protein family HMM PF00107 YP_001063778.1 identified by match to protein family HMM PF00231 YP_001063779.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit YP_001063780.1 identified by match to protein family HMM PF00430 YP_001063781.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_001063782.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0 YP_001063784.1 identified by match to protein family HMM TIGR02230 YP_001063785.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_001063786.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit YP_001063789.1 identified by match to protein family HMM PF00561; match to protein family HMM PF07167 YP_001063790.1 identified by match to protein family HMM PF01515; match to protein family HMM PF01575 YP_001063791.1 Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation YP_001063793.1 identified by match to protein family HMM PF00294 YP_001063794.1 identified by match to protein family HMM PF04972 YP_001063795.1 identified by match to protein family HMM PF01391 YP_001063796.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354 YP_001063798.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_001063803.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_001063804.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670 YP_001063807.1 identified by match to protein family HMM PF01243 YP_001063809.1 identified by match to protein family HMM PF00043; match to protein family HMM PF00462; match to protein family HMM PF02798 YP_001063810.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063811.1 identified by match to protein family HMM PF00440 YP_001063812.1 identified by match to protein family HMM PF00106 YP_001063813.1 identified by match to protein family HMM PF01266 YP_001063814.1 identified by match to protein family HMM PF00561 YP_001063817.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001063821.1 identified by match to protein family HMM PF00082 YP_001063832.1 identified by match to protein family HMM PF02706 YP_001063838.1 identified by match to protein family HMM PF02583 YP_001063839.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001063841.1 identified by match to protein family HMM PF03265 YP_001063845.1 identified by match to protein family HMM PF00149 YP_001063848.1 identified by match to protein family HMM PF00596 YP_001063849.1 identified by match to protein family HMM PF03167 YP_001063851.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue YP_001063853.1 identified by match to protein family HMM PF00082 YP_001063861.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387 YP_001063862.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386 YP_001063864.2 identified by match to protein family HMM PF00905 YP_001063865.1 identified by match to protein family HMM TIGR02276 YP_001063867.1 identified by match to protein family HMM PF03239 YP_001063873.1 identified by match to protein family HMM PF04214 YP_001063877.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04820 YP_001063879.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820 YP_001063880.1 identified by match to protein family HMM PF00355 YP_001063884.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_001063889.1 contains nucleotidyltransferase and I-patch acetyltransferase domains YP_001063890.1 identified by match to protein family HMM PF00535 YP_001063893.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_001063898.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063899.1 identified by match to protein family HMM PF03741 YP_001063902.1 identified by match to protein family HMM PF04828 YP_001063903.1 identified by match to protein family HMM PF00282 YP_001063907.1 identified by match to protein family HMM PF00107 YP_001063909.1 identified by match to protein family HMM PF00282 YP_001063911.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_001063915.1 identified by match to protein family HMM PF00440 YP_001063917.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001063919.1 identified by match to protein family HMM PF00106 YP_001063920.1 identified by match to protein family HMM PF01039 YP_001063921.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001063922.1 identified by match to protein family HMM PF00378 YP_001063923.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_001063924.1 identified by match to protein family HMM PF05853 YP_001063926.1 identified by match to protein family HMM PF00501 YP_001063929.1 identified by match to protein family HMM PF00487 YP_001063930.1 identified by match to protein family HMM PF00550 YP_001063931.1 identified by match to protein family HMM PF02353 YP_001063932.1 identified by match to protein family HMM PF00487 YP_001063933.1 identified by match to protein family HMM PF04909 YP_001063934.1 identified by match to protein family HMM PF00501 YP_001063935.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_001063938.2 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052 YP_001063939.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001063942.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_001063944.1 identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646 YP_001063945.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_001063946.1 identified by match to protein family HMM PF06996 YP_001063947.1 identified by match to protein family HMM PF05947 YP_001063948.1 identified by match to protein family HMM PF07025 YP_001063949.1 identified by match to protein family HMM PF05638 YP_001063950.1 identified by match to protein family HMM PF05943 YP_001063951.1 identified by match to protein family HMM PF05591 YP_001063952.1 identified by match to protein family HMM PF06812 YP_001063953.1 identified by match to protein family HMM PF00069 YP_001063956.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_001063957.1 identified by match to protein family HMM PF00691 YP_001063958.1 identified by match to protein family HMM PF05936 YP_001063962.1 identified by match to protein family HMM PF00498 YP_001063965.1 identified by match to protein family HMM PF01494 YP_001063969.1 identified by match to protein family HMM PF00106 YP_001063970.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063971.1 catalyzes the formation of pyruvate from serine YP_001063973.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063976.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001063980.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001063981.1 identified by match to protein family HMM PF01070 YP_001063982.1 identified by match to protein family HMM PF01557 YP_001063985.1 identified by match to protein family HMM PF01614 YP_001063986.2 catalyzes the formation of indole-3-acetic acid from indole-3-acetamide YP_001063990.1 identified by match to protein family HMM PF00583; match to protein family HMM PF02629 YP_001063993.1 identified by match to protein family HMM PF00816 YP_001063997.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001064000.1 identified by match to protein family HMM PF03600 YP_001064005.1 identified by match to protein family HMM PF03573 YP_001064006.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_001064007.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_001064008.1 identified by match to protein family HMM PF00528 YP_001064009.1 identified by match to protein family HMM PF00528 YP_001064010.1 identified by match to protein family HMM PF00496 YP_001064011.1 identified by match to protein family HMM PF01381; match to protein family HMM PF05899; match to protein family HMM PF07883 YP_001064014.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_001064016.1 identified by match to protein family HMM PF05036 YP_001064017.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001064019.1 identified by match to protein family HMM PF03972 YP_001064020.1 identified by match to protein family HMM PF03328 YP_001064021.1 identified by match to protein family HMM PF02515 YP_001064023.1 identified by match to protein family HMM PF00857 YP_001064024.1 identified by match to protein family HMM PF07690 YP_001064027.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001064029.1 identified by match to protein family HMM PF02515 YP_001064030.1 identified by match to protein family HMM PF01614 YP_001064031.1 identified by match to protein family HMM PF03328 YP_001064032.1 identified by match to protein family HMM PF00267 YP_001064033.1 identified by match to protein family HMM PF03972; match to protein family HMM TIGR01409 YP_001064037.1 identified by match to protein family HMM TIGR00688 YP_001064038.1 identified by match to protein family HMM PF00708 YP_001064039.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_001064042.1 identified by match to protein family HMM PF00535 YP_001064045.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001064046.1 identified by match to protein family HMM PF04055 YP_001064051.1 identified by match to protein family HMM PF00202 YP_001064055.1 identified by match to protein family HMM PF04328 YP_001064056.1 identified by match to protein family HMM PF02554 YP_001064058.1 identified by match to protein family HMM PF00561 YP_001064059.1 identified by match to protein family HMM PF07171; match to protein family HMM PF07364 YP_001064060.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001064062.1 identified by match to protein family HMM PF00903 YP_001064064.1 identified by match to protein family HMM PF04138 YP_001064066.1 identified by match to protein family HMM PF00535 YP_001064071.1 identified by match to protein family HMM PF04964 YP_001064072.1 identified by match to protein family HMM PF04964 YP_001064073.1 identified by match to protein family HMM PF01478 YP_001064075.1 identified by match to protein family HMM PF06981 YP_001064076.1 identified by match to protein family HMM PF00263; match to protein family HMM PF04972 YP_001064079.1 identified by match to protein family HMM PF07811 YP_001064080.1 identified by match to protein family HMM PF07811 YP_001064081.1 identified by match to protein family HMM PF00072 YP_001064082.1 identified by match to protein family HMM PF00437 YP_001064083.1 identified by match to protein family HMM PF00482 YP_001064084.1 identified by match to protein family HMM PF00482 YP_001064086.1 identified by match to protein family HMM PF01037 YP_001064088.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_001064089.1 identified by match to protein family HMM PF01042 YP_001064090.1 identified by match to protein family HMM PF00267 YP_001064091.1 identified by match to protein family HMM PF00324 YP_001064092.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001064093.1 identified by match to protein family HMM PF07171; match to protein family HMM PF07364 YP_001064094.1 identified by match to protein family HMM PF07690 YP_001064095.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001064102.1 identified by match to protein family HMM PF00999 YP_001064103.1 identified by match to protein family HMM PF01068; match to protein family HMM TIGR02776; match to protein family HMM TIGR02777; match to protein family HMM TIGR02778; match to protein family HMM TIGR02779 YP_001064104.1 identified by match to protein family HMM PF02735; match to protein family HMM TIGR02772 YP_001064106.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide YP_001064108.1 identified by match to protein family HMM PF07043 YP_001064110.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_001064113.1 identified by match to protein family HMM PF05067 YP_001064114.1 identified by match to protein family HMM PF05974 YP_001064117.1 identified by match to protein family HMM PF06629 YP_001064130.1 identified by match to protein family HMM PF00571 YP_001064131.1 identified by match to protein family HMM PF05239 YP_001064133.1 identified by match to protein family HMM PF00072 YP_001064135.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_001064136.1 identified by match to protein family HMM PF01566 YP_001064137.1 identified by match to protein family HMM PF00107 YP_001064140.1 identified by match to protein family HMM PF00106 YP_001064146.1 identified by match to protein family HMM PF00106 YP_001064147.1 identified by match to protein family HMM PF04972 YP_001064148.1 identified by match to protein family HMM PF00534 YP_001064149.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001064150.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_001064153.1 identified by match to protein family HMM PF00535 YP_001064154.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001064156.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001064157.1 identified by match to protein family HMM PF00534 YP_001064158.1 identified by match to protein family HMM PF01075 YP_001064159.1 identified by match to protein family HMM PF00535 YP_001064160.1 identified by match to protein family HMM PF02543 YP_001064161.1 identified by match to protein family HMM PF01075 YP_001064162.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 YP_001064163.1 identified by match to protein family HMM PF00106 YP_001064165.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00072; match to protein family HMM PF00664 YP_001064166.1 identified by match to protein family HMM PF04972 YP_001064167.1 identified by match to protein family HMM PF02666 YP_001064169.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_001064171.1 identified by match to protein family HMM PF03446 YP_001064173.1 identified by match to protein family HMM PF01648 YP_001064175.1 identified by match to protein family HMM PF07690 YP_001064177.1 identified by match to protein family HMM PF01613 YP_001064181.1 E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_001064182.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_001064183.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001064184.1 identified by match to protein family HMM PF00676 YP_001064191.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001064193.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00732 YP_001064195.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01734; match to protein family HMM PF07992 YP_001064196.1 identified by match to protein family HMM PF01258 YP_001064199.1 identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849 YP_001064201.1 class I; catalyzes the formation of deoxyribonucleotides from their corresponding ribonucleotides YP_001064205.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740 YP_001064207.1 identified by match to protein family HMM PF00571 YP_001064210.1 identified by match to protein family HMM PF00011 YP_001064212.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_001064213.1 identified by match to protein family HMM PF00037 YP_001064217.1 identified by match to protein family HMM PF01522 YP_001064220.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912 YP_001064222.1 identified by match to protein family HMM PF00085 YP_001064225.1 identified by match to protein family HMM PF00267 YP_001064227.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001064231.1 identified by match to protein family HMM PF00583 YP_001064232.1 identified by match to protein family HMM PF00583 YP_001064234.1 identified by match to protein family HMM PF01523 YP_001064238.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_001064239.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001064240.1 identified by match to protein family HMM PF05494 YP_001064243.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_001064244.1 identified by match to protein family HMM PF00561; match to protein family HMM PF05057; match to protein family HMM PF07819 YP_001064248.1 identified by match to protein family HMM PF02687 YP_001064249.1 identified by match to protein family HMM PF00005 YP_001064250.1 identified by match to protein family HMM PF00743 YP_001064251.1 identified by match to protein family HMM PF00067; match to protein family HMM PF00106 YP_001064252.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF01370; match to protein family HMM PF02801 YP_001064253.1 identified by match to protein family HMM PF00698 YP_001064256.1 identified by match to protein family HMM PF04333 YP_001064259.1 identified by match to protein family HMM PF00202 YP_001064260.1 identified by match to protein family HMM PF03417 YP_001064261.1 similar to ATP-binding component of ABC transporters YP_001064262.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine YP_001064263.1 similar to periplasmic-binding component of ABC transporters YP_001064266.1 identified by match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787 YP_001064268.1 identified by match to protein family HMM PF00494 YP_001064270.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001064271.1 identified by match to protein family HMM PF04509 YP_001064272.1 identified by match to protein family HMM PF00072 YP_001064273.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001064274.1 identified by match to protein family HMM PF03358 YP_001064276.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001064278.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014 YP_001064280.1 identified by match to protein family HMM PF01656 YP_001064281.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180