-- dump date 20111121_010946 -- class Genbank::CDS -- table cds_note -- id note YP_002894731.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_002894732.1 identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188 YP_002894733.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_002894734.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_002894738.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002894739.1 identified by match to protein family HMM PF00589 YP_002894740.1 identified by match to protein family HMM PF08707 YP_002894748.1 identified by glimmer; putative YP_002894749.1 identified by glimmer; putative YP_002894750.1 identified by glimmer; putative YP_002894751.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00239 YP_002894752.1 identified by glimmer; putative YP_002894758.1 identified by match to protein family HMM PF00583 YP_002894759.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002894761.1 identified by match to protein family HMM PF07152 YP_002894762.1 identified by match to protein family HMM PF00903 YP_002894763.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589 YP_002894764.1 identified by match to protein family HMM PF00730; match to protein family HMM PF06029 YP_002894765.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002894766.1 involved in the first step of glutathione biosynthesis YP_002894767.1 identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_002894771.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002894772.1 identified by match to protein family HMM PF01547 YP_002894773.1 identified by match to protein family HMM PF00850 YP_002894774.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381 YP_002894777.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540 YP_002894781.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_002894782.1 identified by match to protein family HMM PF01734 YP_002894783.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002894784.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002894785.1 decatenates replicating daughter chromosomes YP_002894786.1 identified by match to protein family HMM PF00085 YP_002894787.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_002894789.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_002894790.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_002894792.1 identified by match to protein family HMM PF01810 YP_002894793.1 identified by match to protein family HMM PF01435 YP_002894794.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002894795.1 identified by match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_002894797.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08448 YP_002894798.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02954 YP_002894800.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_002894802.1 identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367 YP_002894804.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002894805.1 identified by match to protein family HMM PF03328 YP_002894806.1 identified by match to protein family HMM PF08238 YP_002894807.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_002894808.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423 YP_002894809.1 identified by glimmer; putative YP_002894810.1 identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426 YP_002894811.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_002894812.1 functions in MreBCD complex in some organisms YP_002894813.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_002894814.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002894815.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002894816.1 identified by match to protein family HMM PF03976 YP_002894817.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_002894818.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002894819.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_002894820.1 identified by match to protein family HMM PF01435 YP_002894821.1 identified by match to protein family HMM PF07690 YP_002894822.1 identified by match to protein family HMM PF07021; match to protein family HMM PF08241; match to protein family HMM TIGR02081 YP_002894823.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_002894824.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_002894825.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01993 YP_002894826.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_002894827.1 identified by glimmer; putative YP_002894829.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002894830.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02954 YP_002894831.1 heat shock protein involved in degradation of misfolded proteins YP_002894832.1 heat shock protein involved in degradation of misfolded proteins YP_002894833.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420 YP_002894834.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_002894836.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002894837.1 identified by match to protein family HMM PF04340 YP_002894838.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_002894839.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_002894840.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002894842.1 identified by match to protein family HMM PF05721 YP_002894844.1 identified by match to protein family HMM PF00248 YP_002894846.1 identified by match to protein family HMM PF00892 YP_002894848.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002894852.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_002894853.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002894854.1 identified by match to protein family HMM PF00171 YP_002894855.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_002894856.1 identified by glimmer; putative YP_002894857.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_002894858.1 identified by match to protein family HMM PF02120 YP_002894859.1 identified by match to protein family HMM PF02050; match to protein family HMM TIGR02473 YP_002894860.1 identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR03496 YP_002894861.1 binds to and inhibits the function of flagella specific ATPase FliI YP_002894862.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002894863.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_002894864.1 identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205 YP_002894865.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_002894869.1 identified by match to protein family HMM PF03929 YP_002894870.1 identified by match to protein family HMM PF02625 YP_002894871.1 identified by match to protein family HMM PF00324 YP_002894872.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_002894873.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002894874.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970 YP_002894875.1 identified by match to protein family HMM PF01810 YP_002894876.1 identified by match to protein family HMM PF03372 YP_002894878.1 identified by glimmer; putative YP_002894879.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07728 YP_002894880.1 identified by match to protein family HMM PF01266 YP_002894881.1 identified by match to protein family HMM PF01355 YP_002894882.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002894885.1 identified by match to protein family HMM PF00496 YP_002894886.1 identified by match to protein family HMM PF00528 YP_002894887.1 identified by match to protein family HMM PF00528 YP_002894888.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002894889.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides YP_002894890.1 identified by match to protein family HMM PF07446 YP_002894891.1 identified by match to protein family HMM PF06166 YP_002894892.1 identified by match to protein family HMM PF06149 YP_002894893.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002894894.1 identified by match to protein family HMM PF03746 YP_002894895.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_002894896.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370 YP_002894897.1 identified by match to protein family HMM PF01047 YP_002894898.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_002894899.1 identified by match to protein family HMM PF01464 YP_002894900.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_002894901.1 identified by match to protein family HMM PF02798 YP_002894902.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases YP_002894905.1 identified by glimmer; putative YP_002894906.1 identified by match to protein family HMM PF05130 YP_002894907.1 identified by match to protein family HMM PF04316 YP_002894908.1 required for the assembly of the flagellar basal body P-ring YP_002894909.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_002894910.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_002894911.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production YP_002894912.1 the hook connects flagellar basal body to the flagellar filament YP_002894913.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod YP_002894914.1 makes up the distal portion of the flagellar basal body rod YP_002894915.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Burkholderia thailandensis has 2 copies of this and other flagella genes YP_002894916.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_002894917.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space YP_002894918.1 identified by match to protein family HMM PF07238; match to protein family HMM PF07317 YP_002894919.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_002894920.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes. YP_002894921.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002894922.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_002894924.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_002894925.1 identified by match to protein family HMM PF02417 YP_002894926.1 identified by match to protein family HMM PF02417 YP_002894927.1 identified by glimmer; putative YP_002894929.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686 YP_002894930.1 identified by match to protein family HMM PF06912 YP_002894932.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002894933.1 identified by match to protein family HMM PF00267 YP_002894937.1 identified by match to protein family HMM TIGR03476 YP_002894939.1 identified by match to protein family HMM TIGR03472 YP_002894940.1 identified by match to protein family HMM PF04966 YP_002894943.1 identified by glimmer; putative YP_002894945.1 identified by match to protein family HMM PF01566 YP_002894949.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01424 YP_002894951.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_002894954.1 identified by glimmer; putative YP_002894955.1 identified by match to protein family HMM PF00403 YP_002894957.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_002894959.1 identified by match to protein family HMM PF04011 YP_002894960.1 identified by match to protein family HMM PF04536 YP_002894961.1 identified by match to protein family HMM PF04536 YP_002894963.1 identified by glimmer; putative YP_002894964.1 identified by match to protein family HMM PF02321 YP_002894965.1 identified by match to protein family HMM TIGR01730 YP_002894966.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_002894969.1 identified by match to protein family HMM PF01382 YP_002894970.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002894971.1 identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM PF01128; match to protein family HMM TIGR01173 YP_002894973.1 identified by match to protein family HMM PF01171 YP_002894974.1 identified by match to protein family HMM TIGR00526 YP_002894976.1 identified by match to protein family HMM PF02636 YP_002894979.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002894980.1 identified by match to protein family HMM PF00294 YP_002894981.1 identified by match to protein family HMM PF07221 YP_002894982.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002894983.1 identified by match to protein family HMM PF00015 YP_002894984.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002894985.1 identified by match to protein family HMM PF01758 YP_002894989.1 identified by match to protein family HMM PF00267 YP_002894990.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002894991.1 identified by glimmer; putative YP_002894992.1 identified by match to protein family HMM PF03060 YP_002894994.1 identified by match to protein family HMM PF00561 YP_002894995.1 identified by match to protein family HMM PF01037 YP_002894996.1 identified by match to protein family HMM PF00892 YP_002894997.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF06945 YP_002894998.1 identified by match to protein family HMM PF04073 YP_002894999.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA YP_002895000.1 identified by match to protein family HMM PF02826 YP_002895001.1 identified by match to protein family HMM PF00903 YP_002895002.1 identified by glimmer; putative YP_002895003.1 identified by match to protein family HMM PF06821 YP_002895004.1 identified by match to protein family HMM PF00293 YP_002895006.1 identified by match to protein family HMM PF04185; match to protein family HMM PF05506; match to protein family HMM TIGR03396 YP_002895008.1 identified by match to protein family HMM PF01037 YP_002895009.1 identified by match to protein family HMM PF03591 YP_002895010.1 identified by match to protein family HMM PF05437 YP_002895011.1 identified by match to protein family HMM PF00561 YP_002895012.1 identified by match to protein family HMM PF02630 YP_002895013.1 identified by match to protein family HMM PF01344; match to protein family HMM PF07646; match to protein family HMM PF09118 YP_002895016.1 identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 YP_002895022.1 identified by match to protein family HMM PF00158 YP_002895024.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971 YP_002895025.1 identified by match to protein family HMM PF00450 YP_002895028.1 identified by match to protein family HMM PF01007; match to protein family HMM PF07885 YP_002895030.1 catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_002895031.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831 YP_002895032.1 identified by match to protein family HMM PF00563 YP_002895036.1 identified by match to protein family HMM PF00245 YP_002895037.1 identified by match to protein family HMM PF00245 YP_002895039.1 identified by glimmer; putative YP_002895040.1 identified by match to protein family HMM PF03932 YP_002895041.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_002895042.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_002895043.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_002895044.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_002895048.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002895049.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00106 YP_002895050.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002895051.1 identified by match to protein family HMM PF00484 YP_002895052.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol YP_002895053.1 identified by glimmer; putative YP_002895054.1 identified by match to protein family HMM PF00753 YP_002895055.1 identified by match to protein family HMM PF00005 YP_002895056.1 identified by match to protein family HMM PF00496 YP_002895057.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895058.1 identified by match to protein family HMM PF01047 YP_002895060.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002895061.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002895062.1 identified by match to protein family HMM PF01323 YP_002895063.1 identified by match to protein family HMM PF05036 YP_002895064.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002895065.1 identified by glimmer; putative YP_002895066.1 identified by match to protein family HMM PF08895 YP_002895067.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082 YP_002895068.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF02574 YP_002895071.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002895072.1 identified by match to protein family HMM PF01557 YP_002895074.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002895076.1 identified by match to protein family HMM PF01734 YP_002895077.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895080.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199 YP_002895082.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_002895083.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_002895084.1 identified by match to protein family HMM PF08238 YP_002895085.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_002895086.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_002895087.1 identified by match to protein family HMM PF00005 YP_002895088.1 identified by match to protein family HMM PF02470 YP_002895090.1 identified by match to protein family HMM PF04892 YP_002895093.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002895094.1 identified by match to protein family HMM PF01063 YP_002895095.1 identified by match to protein family HMM PF04359 YP_002895096.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_002895098.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_002895099.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_002895100.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895102.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066 YP_002895103.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895105.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002895106.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; match to protein family HMM PF03446 YP_002895107.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_002895108.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_002895109.1 identified by match to protein family HMM PF02515 YP_002895110.1 identified by match to protein family HMM PF04341 YP_002895111.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake YP_002895112.1 involved in the transport of C4-dicarboxylates across the membrane YP_002895113.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002895114.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954 YP_002895115.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002895118.1 identified by match to protein family HMM PF00975 YP_002895119.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895120.1 identified by match to protein family HMM PF00583 YP_002895122.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368 YP_002895123.1 identified by match to protein family HMM PF04380 YP_002895124.1 identified by match to protein family HMM PF00543 YP_002895125.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_002895126.1 identified by match to protein family HMM PF08886; match to protein family HMM TIGR02049 YP_002895127.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_002895128.1 identified by match to protein family HMM PF03610 YP_002895129.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_002895130.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_002895132.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237 YP_002895133.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_002895134.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_002895135.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00581 YP_002895136.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181 YP_002895137.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_002895138.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002895139.1 identified by match to protein family HMM PF01661 YP_002895140.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_002895142.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002895144.1 identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF00691; match to protein family HMM PF02790; match to protein family HMM TIGR02866 YP_002895145.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891 YP_002895147.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_002895149.1 identified by match to protein family HMM PF00510 YP_002895153.1 identified by match to protein family HMM PF02628 YP_002895154.1 converts protoheme IX and farnesyl diphosphate to heme O YP_002895155.1 identified by match to protein family HMM PF00578; match to protein family HMM PF02630 YP_002895156.1 identified by match to protein family HMM PF03795 YP_002895157.1 identified by match to protein family HMM PF00015; match to protein family HMM PF08269 YP_002895159.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_002895160.1 identified by match to protein family HMM PF04392 YP_002895161.1 identified by match to protein family HMM PF02653 YP_002895162.1 identified by match to protein family HMM PF00005 YP_002895165.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase. YP_002895167.1 identified by match to protein family HMM PF07690 YP_002895169.1 identified by match to protein family HMM PF00487 YP_002895170.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00202; match to protein family HMM TIGR00709 YP_002895172.1 identified by match to protein family HMM PF01061 YP_002895173.1 identified by match to protein family HMM PF00005 YP_002895174.1 identified by match to protein family HMM PF02668 YP_002895175.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002895176.1 identified by match to protein family HMM PF00285 YP_002895177.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_002895178.1 identified by match to protein family HMM PF08541 YP_002895179.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR03098 YP_002895180.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_002895187.1 identified by match to protein family HMM PF00501 YP_002895188.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002895189.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002895190.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_002895191.1 identified by match to protein family HMM PF01380 YP_002895192.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR00830; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417 YP_002895193.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998 YP_002895194.1 identified by match to protein family HMM PF00728; match to protein family HMM PF03173 YP_002895196.1 identified by glimmer; putative YP_002895198.1 identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106 YP_002895199.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_002895200.1 identified by match to protein family HMM PF01654 YP_002895202.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_002895203.1 identified by glimmer; putative YP_002895204.1 identified by match to protein family HMM PF09411 YP_002895205.1 identified by match to protein family HMM TIGR02246 YP_002895206.1 identified by match to protein family HMM PF00682; match to protein family HMM TIGR00970 YP_002895208.1 identified by match to protein family HMM PF00583 YP_002895209.1 identified by match to protein family HMM PF02885 YP_002895210.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879 YP_002895211.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378 YP_002895212.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374 YP_002895214.1 identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262 YP_002895216.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_002895217.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_002895218.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002895219.1 identified by match to protein family HMM PF00037 YP_002895220.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002895221.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002895222.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_002895223.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002895224.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_002895225.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein YP_002895226.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07721 YP_002895227.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_002895228.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_002895229.1 identified by match to protein family HMM PF02190 YP_002895230.1 identified by match to protein family HMM PF03668 YP_002895231.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_002895232.1 identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419 YP_002895233.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_002895234.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_002895235.1 identified by match to protein family HMM PF00005 YP_002895236.1 identified by match to protein family HMM PF03968; match to protein family HMM TIGR03002 YP_002895237.1 identified by match to protein family HMM PF06835 YP_002895238.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670 YP_002895239.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_002895240.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254 YP_002895241.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002895242.1 identified by match to protein family HMM PF01810 YP_002895243.1 identified by match to protein family HMM PF00293 YP_002895244.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_002895246.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_002895247.1 identified by match to protein family HMM PF07690 YP_002895248.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002895249.1 identified by match to protein family HMM PF01738 YP_002895253.1 identified by glimmer; putative YP_002895255.1 identified by glimmer; putative YP_002895256.1 identified by glimmer; putative YP_002895257.1 identified by glimmer; putative YP_002895258.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_002895260.1 identified by match to protein family HMM PF01839; match to protein family HMM PF05593; match to protein family HMM TIGR01643; match to protein family HMM TIGR03696 YP_002895264.1 identified by glimmer; putative YP_002895271.1 identified by match to protein family HMM PF00498 YP_002895272.1 identified by match to protein family HMM PF00069 YP_002895275.1 identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702; match to protein family HMM TIGR03604 YP_002895276.1 identified by match to protein family HMM PF00596 YP_002895277.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895279.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002895280.1 identified by match to protein family HMM PF01943 YP_002895281.1 identified by match to protein family HMM PF00534 YP_002895282.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_002895285.1 identified by match to protein family HMM PF00534 YP_002895286.1 identified by match to protein family HMM PF01569 YP_002895288.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_002895291.1 identified by match to protein family HMM PF08893 YP_002895293.1 identified by match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002895294.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides YP_002895295.1 identified by match to protein family HMM PF00027 YP_002895296.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895297.1 identified by glimmer; putative YP_002895299.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03023; match to protein family HMM TIGR03025 YP_002895300.1 identified by match to protein family HMM PF02563 YP_002895301.1 identified by match to protein family HMM PF00534 YP_002895303.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895304.1 identified by match to protein family HMM PF07452 YP_002895305.1 identified by match to protein family HMM PF07859 YP_002895307.1 identified by match to protein family HMM PF07690 YP_002895308.1 identified by match to protein family HMM PF01047 YP_002895309.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_002895311.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002895312.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07908; match to protein family HMM PF07969 YP_002895314.1 identified by match to protein family HMM PF01042 YP_002895315.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_002895316.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_002895318.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913 YP_002895319.1 identified by match to protein family HMM PF01230 YP_002895320.1 identified by match to protein family HMM PF06155 YP_002895321.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_002895322.1 identified by match to protein family HMM PF04280 YP_002895324.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions YP_002895326.1 identified by match to protein family HMM PF05724; match to protein family HMM PF08242 YP_002895327.1 identified by match to protein family HMM PF09723; match to protein family HMM TIGR02605 YP_002895328.1 identified by match to protein family HMM PF04367 YP_002895329.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002895330.1 converts dATP to dAMP and pyrophosphate YP_002895331.1 identified by match to protein family HMM PF00614 YP_002895332.1 identified by match to protein family HMM PF00440 YP_002895333.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_002895334.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_002895335.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002895336.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002895337.1 identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129 YP_002895338.1 identified by match to protein family HMM PF09655; match to protein family HMM TIGR02664 YP_002895339.1 identified by match to protein family HMM PF03061 YP_002895340.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002895341.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002895343.1 identified by match to protein family HMM PF00483 YP_002895344.1 identified by match to protein family HMM PF01636 YP_002895345.1 identified by match to protein family HMM PF04453 YP_002895346.1 identified by match to protein family HMM PF00639; match to protein family HMM PF09312 YP_002895347.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_002895348.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002895349.1 identified by match to protein family HMM PF00892 YP_002895350.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068 YP_002895352.1 identified by match to protein family HMM PF01863 YP_002895353.1 identified by match to protein family HMM PF01553 YP_002895354.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_002895355.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002895356.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002895357.1 Transfers the fatty acyl group on membrane lipoproteins YP_002895358.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471 YP_002895359.1 identified by match to protein family HMM PF04752; match to protein family HMM PF06094 YP_002895360.1 contains unknown N-terminal domain/putative metalloprotease C-terminal domain YP_002895363.1 identified by match to protein family HMM PF02562 YP_002895364.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002895365.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895366.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895367.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002895368.1 identified by match to protein family HMM PF07690 YP_002895369.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002895370.1 identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506 YP_002895371.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002895372.1 identified by match to protein family HMM PF00892 YP_002895373.1 identified by match to protein family HMM PF02655 YP_002895374.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_002895375.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002895376.1 identified by match to protein family HMM PF00275 YP_002895377.1 identified by match to protein family HMM PF01042 YP_002895379.1 identified by match to protein family HMM PF00230 YP_002895380.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_002895381.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_002895385.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002895386.1 identified by match to protein family HMM PF01019 YP_002895387.1 identified by glimmer; putative YP_002895390.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002895391.1 identified by match to protein family HMM PF00034 YP_002895394.1 identified by match to protein family HMM PF05425 YP_002895395.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_002895396.1 identified by match to protein family HMM PF04828 YP_002895398.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409 YP_002895399.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF03707 YP_002895400.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966 YP_002895404.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229 YP_002895406.1 identified by glimmer; putative YP_002895407.1 identified by match to protein family HMM PF01565; match to protein family HMM PF04030; match to protein family HMM PF09129 YP_002895408.1 identified by glimmer; putative YP_002895409.1 identified by match to protein family HMM PF03466 YP_002895410.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_002895411.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895413.1 identified by glimmer; putative YP_002895414.1 identified by glimmer; putative YP_002895415.1 identified by match to protein family HMM PF00005 YP_002895416.1 identified by match to protein family HMM PF00528 YP_002895417.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895419.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_002895420.1 identified by match to protein family HMM PF00156 YP_002895421.1 identified by match to protein family HMM PF00912 YP_002895423.1 identified by match to protein family HMM PF00034 YP_002895425.1 identified by match to protein family HMM PF00115; match to protein family HMM PF00510; match to protein family HMM TIGR02891 YP_002895426.1 identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM TIGR02866 YP_002895427.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_002895428.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_002895431.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_002895432.1 identified by match to protein family HMM PF05947; match to protein family HMM TIGR03359 YP_002895435.1 identified by match to protein family HMM PF01804 YP_002895436.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002895437.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002895438.1 identified by match to protein family HMM PF00174 YP_002895439.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08667 YP_002895441.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895442.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002895443.1 identified by glimmer; putative YP_002895444.1 identified by match to protein family HMM PF01609 YP_002895446.1 identified by glimmer; putative YP_002895447.1 identified by glimmer; putative YP_002895448.1 identified by glimmer; putative YP_002895449.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_002895450.1 identified by glimmer; putative YP_002895451.1 identified by glimmer; putative YP_002895453.1 identified by glimmer; putative YP_002895454.1 identified by glimmer; putative YP_002895455.1 identified by match to protein family HMM PF00589 YP_002895456.1 identified by glimmer; putative YP_002895457.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002895458.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521 YP_002895459.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002895460.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002895461.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_002895463.1 catalyzes the interconversion of succinyl-CoA and succinate YP_002895464.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_002895465.1 identified by match to protein family HMM PF03741 YP_002895466.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002895467.1 identified by match to protein family HMM PF04932 YP_002895470.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895471.1 identified by match to protein family HMM TIGR01352 YP_002895472.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_002895474.1 identified by match to protein family HMM PF01435 YP_002895477.1 identified by match to protein family HMM PF00561 YP_002895479.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195 YP_002895481.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002895482.1 identified by match to protein family HMM PF03591 YP_002895483.1 identified by match to protein family HMM PF05437 YP_002895484.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002895486.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002895487.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_002895488.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002895489.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_002895490.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_002895491.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_002895493.1 identified by match to protein family HMM PF04116 YP_002895494.1 identified by glimmer; putative YP_002895495.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666 YP_002895496.1 identified by glimmer; putative YP_002895497.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002895498.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002895500.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_002895502.1 identified by match to protein family HMM PF04248 YP_002895503.1 identified by match to protein family HMM PF06240 YP_002895504.1 identified by match to protein family HMM PF00440; match to protein family HMM PF08361 YP_002895506.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_002895507.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_002895508.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_002895509.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895510.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895511.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_002895512.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002895513.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_002895514.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02818 YP_002895515.1 identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821 YP_002895516.1 identified by match to protein family HMM PF00950 YP_002895517.1 identified by match to protein family HMM PF00005 YP_002895518.1 identified by match to protein family HMM PF01297 YP_002895519.1 identified by match to protein family HMM PF01475 YP_002895520.1 identified by glimmer; putative YP_002895521.1 Converts D-sorbitol to L-sorbose YP_002895522.1 identified by match to protein family HMM PF00294 YP_002895523.1 identified by match to protein family HMM PF08013; match to protein family HMM TIGR02810 YP_002895524.1 identified by match to protein family HMM PF01547 YP_002895525.1 identified by match to protein family HMM PF00528 YP_002895526.1 identified by match to protein family HMM PF00528 YP_002895527.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002895528.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_002895529.1 identified by glimmer; putative YP_002895530.1 identified by match to protein family HMM TIGR01409 YP_002895531.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002895532.1 identified by match to protein family HMM PF00144 YP_002895533.1 identified by match to protein family HMM PF07690 YP_002895534.1 identified by match to protein family HMM PF04198 YP_002895535.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_002895536.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01232; match to protein family HMM PF08125 YP_002895537.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002895538.1 catalyzes the formation of benzaldehyde from benzoylformate YP_002895539.1 identified by match to protein family HMM PF00171 YP_002895540.1 identified by match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM PF08546; match to protein family HMM TIGR00745 YP_002895542.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002895543.1 identified by match to protein family HMM PF03301; match to protein family HMM TIGR03036 YP_002895544.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01814 YP_002895545.1 identified by match to protein family HMM PF04199; match to protein family HMM TIGR03035 YP_002895546.1 identified by match to protein family HMM PF01037 YP_002895547.1 identified by match to protein family HMM PF01613 YP_002895548.1 identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_002895550.1 identified by match to protein family HMM PF01904 YP_002895551.1 identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002895552.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_002895553.1 identified by match to protein family HMM PF00899 YP_002895554.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_002895555.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_002895556.1 identified by match to protein family HMM PF00892 YP_002895558.1 identified by match to protein family HMM PF01520 YP_002895559.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_002895560.1 identified by match to protein family HMM PF08331; match to protein family HMM TIGR00276 YP_002895561.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_002895562.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002895563.1 identified by match to protein family HMM PF00501 YP_002895564.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011 YP_002895565.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_002895566.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_002895567.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002895568.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_002895570.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002895571.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_002895573.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002895574.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002895575.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_002895576.1 identified by match to protein family HMM PF03966 YP_002895577.1 Transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_002895579.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002895580.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_002895582.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002895583.1 identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937 YP_002895584.1 identified by match to protein family HMM PF00027 YP_002895585.1 identified by match to protein family HMM PF06127 YP_002895586.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate YP_002895587.1 identified by glimmer; putative YP_002895588.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002895589.1 identified by match to protein family HMM PF00563 YP_002895591.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002895593.1 identified by match to protein family HMM PF00285; match to protein family HMM PF00376 YP_002895598.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002895599.1 identified by match to protein family HMM PF00248 YP_002895600.1 identified by glimmer; putative YP_002895604.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002895605.1 identified by glimmer; putative YP_002895606.1 identified by match to protein family HMM PF02643 YP_002895607.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093 YP_002895608.1 Converts isocitrate to alpha ketoglutarate YP_002895610.1 identified by match to protein family HMM PF07731; match to protein family HMM PF07732 YP_002895611.1 identified by match to protein family HMM PF00313 YP_002895612.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_002895613.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639 YP_002895614.1 identified by match to protein family HMM PF00324 YP_002895616.1 identified by match to protein family HMM PF03988 YP_002895617.1 catalyzes the formation of dUMP from dUTP YP_002895618.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_002895619.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002895620.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_002895621.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_002895622.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_002895623.1 identified by match to protein family HMM PF01189 YP_002895624.1 identified by match to protein family HMM PF00924 YP_002895625.1 identified by match to protein family HMM PF00487 YP_002895627.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_002895628.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_002895629.1 catalyzes the formation of oxaloacetate from L-aspartate YP_002895630.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002895631.1 identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009 YP_002895632.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_002895633.1 identified by match to protein family HMM PF00254 YP_002895634.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_002895636.1 identified by match to protein family HMM PF02653 YP_002895637.1 identified by match to protein family HMM PF02653 YP_002895638.1 identified by match to protein family HMM PF00005 YP_002895639.1 identified by match to protein family HMM PF00005 YP_002895641.1 identified by match to protein family HMM PF00583 YP_002895642.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_002895643.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose YP_002895644.1 identified by match to protein family HMM PF01370 YP_002895646.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002895647.1 identified by match to protein family HMM PF04234 YP_002895648.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002895649.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002895650.1 identified by match to protein family HMM PF00561 YP_002895651.1 identified by match to protein family HMM PF03473 YP_002895652.1 identified by match to protein family HMM PF00701 YP_002895653.1 identified by match to protein family HMM PF00596 YP_002895654.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002895656.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002895660.1 identified by match to protein family HMM PF00665 YP_002895661.1 identified by match to protein family HMM PF00589 YP_002895662.1 identified by match to protein family HMM PF05973; match to protein family HMM TIGR02683 YP_002895664.1 identified by glimmer; putative YP_002895665.1 identified by glimmer; putative YP_002895668.1 identified by match to protein family HMM PF06067 YP_002895669.1 identified by match to protein family HMM PF02195 YP_002895670.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895672.1 identified by match to protein family HMM PF05284 YP_002895674.1 identified by match to protein family HMM PF01381 YP_002895676.1 identified by glimmer; putative YP_002895680.1 identified by match to protein family HMM PF01656 YP_002895685.1 identified by match to protein family HMM PF00355; match to protein family HMM PF00848 YP_002895686.1 identified by match to protein family HMM PF00866 YP_002895687.1 identified by match to protein family HMM PF00775; match to protein family HMM PF04444 YP_002895688.1 identified by match to protein family HMM PF00465 YP_002895689.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07690 YP_002895690.1 identified by glimmer; putative YP_002895691.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002895692.1 type IV secretion VirD4 coupling protein family YP_002895694.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR02782 YP_002895695.1 identified by match to protein family HMM PF04956 YP_002895697.1 type IV secretion system VirB4 family YP_002895698.1 identified by match to protein family HMM TIGR02780 YP_002895699.1 identified by match to protein family HMM PF04610; match to protein family HMM TIGR02783 YP_002895700.1 identified by match to protein family HMM PF04585 YP_002895701.1 identified by match to protein family HMM PF03524; match to protein family HMM TIGR02775 YP_002895702.1 identified by match to protein family HMM PF03743 YP_002895705.1 identified by glimmer; putative YP_002895706.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_002895707.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_002895708.1 identified by match to protein family HMM PF03060 YP_002895709.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002895710.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002895711.1 identified by glimmer; putative YP_002895712.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase YP_002895713.1 identified by glimmer; putative YP_002895714.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002895715.1 identified by match to protein family HMM PF00665 YP_002895716.1 identified by match to protein family HMM PF01527 YP_002895717.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002895719.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895720.1 identified by match to protein family HMM PF00005 YP_002895723.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002895724.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_002895725.1 identified by match to protein family HMM PF06073 YP_002895726.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_002895727.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_002895728.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR02034 YP_002895729.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1 YP_002895730.1 identified by match to protein family HMM PF01903 YP_002895731.1 identified by match to protein family HMM PF03739 YP_002895732.1 identified by match to protein family HMM PF03739 YP_002895733.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_002895734.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_002895736.1 identified by match to protein family HMM PF00034 YP_002895738.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002895739.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002895740.1 identified by glimmer; putative YP_002895741.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002895742.1 identified by match to protein family HMM PF04402 YP_002895743.1 identified by glimmer; putative YP_002895744.1 identified by match to protein family HMM PF01878 YP_002895745.1 identified by match to protein family HMM PF05164 YP_002895747.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_002895749.1 identified by match to protein family HMM PF01032 YP_002895750.1 identified by match to protein family HMM PF00005 YP_002895751.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_002895752.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_002895753.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162 YP_002895754.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895756.1 identified by match to protein family HMM PF01497 YP_002895757.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase YP_002895758.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_002895759.1 identified by match to protein family HMM PF02283 YP_002895760.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_002895761.1 identified by match to protein family HMM PF07681 YP_002895762.1 identified by match to protein family HMM PF01656 YP_002895763.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_002895764.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_002895766.1 identified by match to protein family HMM PF02616 YP_002895768.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_002895769.1 identified by match to protein family HMM PF04357 YP_002895771.1 identified by match to protein family HMM PF00891 YP_002895772.1 identified by glimmer; putative YP_002895773.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002895774.1 identified by match to protein family HMM PF00691; match to protein family HMM PF05433 YP_002895775.1 identified by match to protein family HMM PF01656; match to protein family HMM PF01883 YP_002895776.1 identified by match to protein family HMM PF00080 YP_002895777.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_002895778.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711 YP_002895780.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002895781.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_002895782.1 identified by match to protein family HMM PF00577 YP_002895784.1 identified by match to protein family HMM PF05229 YP_002895785.1 identified by match to protein family HMM PF05229 YP_002895786.1 identified by glimmer; putative YP_002895788.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002895789.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_002895791.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_002895792.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis YP_002895793.1 identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_002895795.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002895796.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002895797.1 identified by match to protein family HMM PF00171 YP_002895798.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_002895799.1 identified by match to protein family HMM PF01541 YP_002895801.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895802.1 identified by match to protein family HMM PF04339 YP_002895803.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002895804.1 identified by match to protein family HMM PF00543 YP_002895806.1 identified by glimmer; putative YP_002895807.1 identified by match to protein family HMM PF00005 YP_002895808.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002895809.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002895810.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096 YP_002895811.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895812.1 identified by match to protein family HMM PF02678 YP_002895814.1 identified by glimmer; putative YP_002895815.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002895816.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002895819.1 identified by match to protein family HMM PF00528 YP_002895820.1 identified by match to protein family HMM PF00005 YP_002895825.1 identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400 YP_002895827.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895828.1 identified by match to protein family HMM PF07690 YP_002895829.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_002895831.1 identified by glimmer; putative YP_002895836.1 serine protease inhibitor, inhibits trypsin and other proteases YP_002895837.1 identified by match to protein family HMM PF00768 YP_002895840.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08816 YP_002895841.1 identified by glimmer; putative YP_002895843.1 identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901 YP_002895844.1 identified by glimmer; putative YP_002895845.1 identified by glimmer; putative YP_002895846.1 identified by match to protein family HMM PF03865; match to protein family HMM PF08479 YP_002895847.1 identified by glimmer; putative YP_002895848.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002895850.1 identified by match to protein family HMM PF02371 YP_002895855.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895856.1 identified by glimmer; putative YP_002895857.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895858.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895859.1 identified by glimmer; putative YP_002895860.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_002895869.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895870.1 identified by match to protein family HMM PF08707 YP_002895871.1 identified by glimmer; putative YP_002895872.1 identified by glimmer; putative YP_002895873.1 identified by glimmer; putative YP_002895874.1 identified by match to protein family HMM PF00589 YP_002895875.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895881.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002895882.1 identified by match to protein family HMM PF00561 YP_002895884.1 identified by match to protein family HMM PF00301 YP_002895886.1 identified by match to protein family HMM PF00005 YP_002895887.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002895888.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002895889.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895891.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002895892.1 identified by match to protein family HMM PF05232 YP_002895893.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002895895.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002895896.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_002895897.1 identified by match to protein family HMM PF00850 YP_002895898.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895899.1 identified by match to protein family HMM PF02417 YP_002895900.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002895901.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_002895902.1 identified by match to protein family HMM PF01042 YP_002895903.1 identified by match to protein family HMM PF00155 YP_002895904.1 identified by match to protein family HMM PF00892 YP_002895906.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002895907.1 molecular chaperone YP_002895908.1 identified by match to protein family HMM PF04345 YP_002895913.1 identified by match to protein family HMM PF00474 YP_002895914.1 identified by match to protein family HMM PF00903; match to protein family HMM PF06983 YP_002895915.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874 YP_002895917.1 identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843 YP_002895919.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07728 YP_002895920.1 identified by match to protein family HMM PF00034 YP_002895921.1 identified by match to protein family HMM PF00034 YP_002895922.1 identified by match to protein family HMM PF08897 YP_002895923.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151 YP_002895924.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_002895925.1 Involved in the electron transport chain YP_002895926.1 identified by match to protein family HMM PF00440 YP_002895927.1 identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849 YP_002895930.1 identified by match to protein family HMM PF00723 YP_002895933.1 identified by match to protein family HMM PF01580; match to protein family HMM PF09397 YP_002895934.1 identified by match to protein family HMM PF03724 YP_002895935.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002895936.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_002895941.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002895943.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_002895944.1 identified by match to protein family HMM PF00581 YP_002895945.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895946.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_002895947.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203 YP_002895948.1 identified by match to protein family HMM PF00534 YP_002895949.1 identified by match to protein family HMM PF01075 YP_002895951.1 identified by match to protein family HMM PF00534 YP_002895952.1 identified by match to protein family HMM PF01075 YP_002895953.1 identified by match to protein family HMM PF00535 YP_002895956.1 identified by match to protein family HMM PF07690 YP_002895957.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895959.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_002895960.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02957 YP_002895967.1 identified by match to protein family HMM TIGR03398 YP_002895969.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_002895971.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_002895972.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_002895973.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_002895974.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_002895975.1 catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP YP_002895976.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_002895977.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002895978.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_002895979.1 identified by glimmer; putative YP_002895980.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002895981.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002895982.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_002895983.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002895985.1 identified by match to protein family HMM PF09604 YP_002895986.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_002895987.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_002895988.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex YP_002895990.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702 YP_002895991.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002895993.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03891 YP_002895994.1 identified by match to protein family HMM PF00893 YP_002895996.1 identified by match to protein family HMM PF02687 YP_002895997.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002895998.1 identified by match to protein family HMM PF01152 YP_002896000.1 identified by match to protein family HMM PF07973 YP_002896001.1 identified by match to protein family HMM PF06041 YP_002896002.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_002896003.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002896004.1 identified by glimmer; putative YP_002896006.1 Converts glucose to D-glucono-1,5 lactone YP_002896007.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_002896008.1 identified by match to protein family HMM PF00440 YP_002896009.1 identified by match to protein family HMM PF01219 YP_002896010.1 identified by match to protein family HMM PF00534 YP_002896011.1 identified by match to protein family HMM PF00149 YP_002896012.1 identified by match to protein family HMM PF06271 YP_002896015.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002896017.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate YP_002896018.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002896019.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002896020.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_002896021.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_002896022.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_002896023.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002896024.1 identified by match to protein family HMM PF00484 YP_002896026.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896028.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002896029.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR03591 YP_002896030.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02824 YP_002896031.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002896032.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_002896033.1 Catalyzes the transfer of electrons from NADH to quinone YP_002896034.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR01957 YP_002896035.1 Catalyzes the transfer of electrons from NADH to quinone YP_002896036.1 Catalyzes the transfer of electrons from NADH to quinone YP_002896037.1 Catalyzes the transfer of electrons from NADH to quinone YP_002896038.1 identified by match to protein family HMM PF01512; match to protein family HMM TIGR01959 YP_002896039.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002896040.1 Catalyzes the transfer of electrons from NADH to quinone YP_002896041.1 Catalyzes the transfer of electrons from NADH to quinone YP_002896042.1 Catalyzes the transfer of electrons from NADH to quinone YP_002896043.1 Catalyzes the transfer of electrons from NADH to quinone YP_002896044.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002896045.1 Catalyzes the transfer of electrons from NADH to quinone YP_002896046.1 Catalyzes the transfer of electrons from NADH to quinone YP_002896048.1 identified by match to protein family HMM PF00293 YP_002896049.1 identified by match to protein family HMM PF06676 YP_002896050.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_002896051.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_002896052.1 identified by match to protein family HMM PF01575 YP_002896053.1 identified by match to protein family HMM PF01575 YP_002896055.1 identified by glimmer; putative YP_002896056.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_002896057.1 identified by match to protein family HMM PF01636 YP_002896058.1 identified by match to protein family HMM PF00300 YP_002896059.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002896061.1 identified by match to protein family HMM PF02798 YP_002896062.1 catalyzes the transfer of an amino moiety YP_002896064.1 identified by match to protein family HMM PF03883 YP_002896065.1 identified by match to protein family HMM PF00246 YP_002896068.1 identified by match to protein family HMM PF00196 YP_002896071.1 identified by match to protein family HMM PF00557 YP_002896073.1 identified by match to protein family HMM PF00165 YP_002896074.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_002896077.1 identified by glimmer; putative YP_002896078.1 identified by match to protein family HMM TIGR01409; match to protein family HMM TIGR01728 YP_002896079.1 identified by glimmer; putative YP_002896081.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896082.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002896086.1 identified by match to protein family HMM PF00034 YP_002896088.1 identified by match to protein family HMM PF00116 YP_002896089.1 identified by match to protein family HMM PF00115 YP_002896090.1 identified by match to protein family HMM PF00034 YP_002896092.1 identified by match to protein family HMM PF08668 YP_002896093.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002896094.1 identified by glimmer; putative YP_002896095.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002896096.1 identified by match to protein family HMM PF01113; match to protein family HMM PF01370 YP_002896099.1 identified by match to protein family HMM PF00873 YP_002896100.1 identified by match to protein family HMM PF00873 YP_002896101.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_002896102.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896103.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002896109.1 identified by match to protein family HMM PF02082 YP_002896110.1 identified by glimmer; putative YP_002896111.1 identified by match to protein family HMM PF01370; match to protein family HMM PF05368 YP_002896112.1 identified by match to protein family HMM PF05995 YP_002896113.1 identified by match to protein family HMM PF01037 YP_002896114.1 identified by match to protein family HMM PF00005 YP_002896115.1 identified by match to protein family HMM PF00528 YP_002896116.1 identified by match to protein family HMM PF01547 YP_002896119.1 identified by match to protein family HMM PF00324 YP_002896121.1 identified by match to protein family HMM PF05976 YP_002896123.1 identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450 YP_002896124.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609 YP_002896126.1 identified by match to protein family HMM PF00472 YP_002896127.1 identified by match to protein family HMM PF00563 YP_002896128.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002896129.1 identified by match to protein family HMM PF00892 YP_002896130.1 identified by glimmer; putative YP_002896133.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_002896134.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896135.1 identified by match to protein family HMM TIGR02953 YP_002896136.1 identified by glimmer; putative YP_002896137.1 identified by match to protein family HMM PF06764 YP_002896138.1 identified by match to protein family HMM PF00174 YP_002896139.1 identified by glimmer; putative YP_002896140.1 identified by match to protein family HMM PF00892 YP_002896141.1 identified by match to protein family HMM PF07690 YP_002896143.1 identified by match to protein family HMM PF03988 YP_002896145.1 identified by match to protein family HMM PF00149 YP_002896146.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002896148.1 identified by match to protein family HMM PF00528 YP_002896149.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896151.1 identified by match to protein family HMM PF00528 YP_002896152.1 identified by match to protein family HMM PF01547 YP_002896153.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002896154.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896158.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896159.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002896161.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896162.1 identified by match to protein family HMM PF07040 YP_002896165.1 identified by match to protein family HMM PF04299 YP_002896166.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002896167.1 identified by match to protein family HMM PF01037 YP_002896169.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_002896170.1 identified by match to protein family HMM PF03055 YP_002896172.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896173.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002896174.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002896177.1 identified by match to protein family HMM PF06073 YP_002896178.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_002896179.1 identified by glimmer; putative YP_002896181.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002896184.1 identified by match to protein family HMM PF00011 YP_002896185.1 identified by match to protein family HMM PF00011 YP_002896187.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896188.1 identified by glimmer; putative YP_002896189.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896191.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_002896192.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_002896194.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002896195.1 identified by match to protein family HMM PF03817; match to protein family HMM TIGR00807 YP_002896196.1 identified by match to protein family HMM PF03818; match to protein family HMM TIGR00808 YP_002896197.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002896198.1 identified by match to protein family HMM TIGR01110 YP_002896199.1 acyl carrier protein of malonate decarboxylase YP_002896200.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A YP_002896201.1 identified by match to protein family HMM PF06833; match to protein family HMM TIGR03134 YP_002896202.1 catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein YP_002896203.1 identified by match to protein family HMM PF01874; match to protein family HMM TIGR03132 YP_002896204.1 identified by match to protein family HMM TIGR03131 YP_002896207.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_002896209.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002896211.1 identified by match to protein family HMM PF02694 YP_002896212.1 3'-5' exonuclease of DNA polymerase III YP_002896213.1 identified by match to protein family HMM PF00075 YP_002896214.1 identified by match to protein family HMM PF08241 YP_002896215.1 identified by match to protein family HMM PF00753; match to protein family HMM TIGR03413 YP_002896216.1 identified by match to protein family HMM PF01464; match to protein family HMM PF01476; match to protein family HMM PF06474 YP_002896217.1 identified by match to protein family HMM PF07690 YP_002896219.1 identified by glimmer; putative YP_002896220.1 identified by match to protein family HMM PF00165 YP_002896222.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002896223.1 identified by match to protein family HMM PF01810 YP_002896224.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_002896225.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002896227.1 identified by match to protein family HMM PF01985 YP_002896228.1 identified by glimmer; putative YP_002896229.1 identified by match to protein family HMM PF01728 YP_002896230.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_002896231.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_002896232.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002896233.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975 YP_002896234.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_002896235.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_002896236.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002896237.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_002896238.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154 YP_002896239.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR02966 YP_002896240.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_002896241.1 identified by match to protein family HMM PF02541 YP_002896245.1 identified by glimmer; putative YP_002896247.1 identified by glimmer; putative YP_002896250.1 identified by similarity to SP:P76502; match to protein family HMM PF00300; match to protein family HMM TIGR00249 YP_002896255.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002896257.1 identified by match to protein family HMM PF00501 YP_002896260.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_002896261.1 identified by match to protein family HMM PF01263 YP_002896262.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002896265.1 identified by match to protein family HMM PF09718 YP_002896266.1 identified by match to protein family HMM PF04586 YP_002896267.1 identified by glimmer; putative YP_002896268.1 identified by glimmer; putative YP_002896269.1 identified by glimmer; putative YP_002896272.1 identified by glimmer; putative YP_002896274.1 identified by match to protein family HMM PF00589 YP_002896275.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896281.1 identified by match to protein family HMM PF05488 YP_002896283.1 identified by match to protein family HMM PF02409; match to protein family HMM PF05583; match to protein family HMM PF09278; match to protein family HMM TIGR00027 YP_002896284.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002896287.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002896288.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002896289.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401 YP_002896290.1 identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217 YP_002896291.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402 YP_002896292.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100 YP_002896293.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_002896294.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; match to protein family HMM TIGR02457 YP_002896295.1 identified by match to protein family HMM PF00128 YP_002896299.1 identified by match to protein family HMM PF00041; match to protein family HMM TIGR01840 YP_002896302.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896306.1 identified by glimmer; putative YP_002896307.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002896308.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002896311.1 identified by match to protein family HMM PF05666 YP_002896314.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002896316.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662 YP_002896317.1 identified by match to protein family HMM PF00691 YP_002896318.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002896319.1 identified by match to protein family HMM PF00816 YP_002896323.1 identified by match to protein family HMM PF00652; match to protein family HMM PF01344; match to protein family HMM PF07646; match to protein family HMM PF09118 YP_002896326.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896327.1 identified by match to protein family HMM PF05947; match to protein family HMM TIGR03359 YP_002896332.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361 YP_002896337.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361 YP_002896339.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896342.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361 YP_002896346.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896347.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002896349.1 identified by glimmer; putative YP_002896351.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896352.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896354.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896355.1 identified by glimmer; putative YP_002896357.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_002896359.1 identified by glimmer; putative YP_002896361.1 identified by match to protein family HMM PF00816 YP_002896363.1 identified by match to protein family HMM PF04909 YP_002896364.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002896366.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002896370.1 identified by match to protein family HMM PF05229 YP_002896371.1 identified by match to protein family HMM PF05229 YP_002896372.1 identified by match to protein family HMM PF05229 YP_002896374.1 identified by match to protein family HMM PF00577 YP_002896375.1 identified by match to protein family HMM PF05229 YP_002896376.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002896377.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545 YP_002896378.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_002896379.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002896381.1 identified by match to protein family HMM PF00529 YP_002896383.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_002896384.1 identified by match to protein family HMM PF04185; match to protein family HMM TIGR03397 YP_002896385.1 identified by match to protein family HMM PF03150 YP_002896387.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_002896391.1 identified by match to protein family HMM PF00293 YP_002896392.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002896394.1 identified by match to protein family HMM PF02515 YP_002896395.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002896396.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002896397.1 identified by match to protein family HMM PF06779; match to protein family HMM PF07690 YP_002896398.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_002896400.1 identified by match to protein family HMM PF00293 YP_002896401.1 identified by match to protein family HMM PF01906 YP_002896402.1 identified by match to protein family HMM PF00465 YP_002896404.1 identified by match to protein family HMM PF03061 YP_002896405.1 identified by match to protein family HMM PF02653 YP_002896406.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02653 YP_002896407.1 identified by match to protein family HMM PF00005 YP_002896408.1 identified by match to protein family HMM PF06845 YP_002896409.1 identified by match to protein family HMM PF01261 YP_002896410.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_002896411.1 identified by match to protein family HMM PF00294 YP_002896412.1 identified by match to protein family HMM PF00005 YP_002896413.1 identified by match to protein family HMM PF02653 YP_002896415.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002896416.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002896417.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_002896418.1 identified by match to protein family HMM PF01206 YP_002896420.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002896421.1 identified by match to protein family HMM PF01476 YP_002896422.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF05226 YP_002896424.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_002896425.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002896426.1 identified by match to protein family HMM PF00580 YP_002896427.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_002896428.1 identified by match to protein family HMM PF07690 YP_002896429.1 identified by match to protein family HMM PF00015 YP_002896430.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896431.1 identified by match to protein family HMM PF00529 YP_002896432.1 identified by match to protein family HMM PF07869 YP_002896433.1 identified by match to protein family HMM PF04632 YP_002896434.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_002896435.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002896437.1 identified by match to protein family HMM PF00149 YP_002896438.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_002896440.1 identified by match to protein family HMM PF00258; match to protein family HMM PF03358; match to protein family HMM TIGR01755 YP_002896441.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_002896443.1 identified by glimmer; putative YP_002896444.1 identified by match to protein family HMM PF00571 YP_002896445.1 identified by match to protein family HMM PF01553; match to protein family HMM PF07690 YP_002896446.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002896448.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF05187 YP_002896449.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659 YP_002896450.1 identified by match to protein family HMM PF03061 YP_002896451.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896453.1 identified by match to protein family HMM PF01610 YP_002896454.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896455.1 identified by glimmer; putative YP_002896456.1 identified by match to protein family HMM PF00196; match to protein family HMM PF08448 YP_002896457.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_002896458.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_002896459.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659 YP_002896460.1 identified by match to protein family HMM PF01522 YP_002896461.1 identified by match to protein family HMM PF07366 YP_002896462.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002896463.1 identified by match to protein family HMM PF00561 YP_002896464.1 identified by match to protein family HMM PF01042 YP_002896465.1 identified by match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_002896466.1 identified by glimmer; putative YP_002896467.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002896468.1 identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 YP_002896469.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_002896470.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002896471.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002896472.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002896473.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_002896474.1 identified by match to protein family HMM PF00376 YP_002896475.1 identified by match to protein family HMM PF05665 YP_002896476.1 identified by match to protein family HMM PF01757 YP_002896481.1 identified by match to protein family HMM PF03992 YP_002896484.1 identified by match to protein family HMM PF02698 YP_002896486.1 identified by glimmer; putative YP_002896488.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002896489.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_002896490.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002896491.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_002896492.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002896493.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002896494.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002896495.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002896496.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002896497.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR00998 YP_002896498.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_002896499.1 identified by match to protein family HMM PF01047 YP_002896501.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_002896502.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_002896503.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_002896504.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002896505.1 identified by match to protein family HMM PF03969 YP_002896508.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896509.1 identified by match to protein family HMM PF08479 YP_002896514.1 identified by match to protein family HMM PF04964 YP_002896515.1 identified by match to protein family HMM PF01478 YP_002896516.1 identified by match to protein family HMM PF07811 YP_002896517.1 identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177 YP_002896518.1 identified by match to protein family HMM PF00263 YP_002896520.1 identified by match to protein family HMM PF00437 YP_002896521.1 identified by match to protein family HMM PF00482 YP_002896522.1 identified by match to protein family HMM PF00482 YP_002896523.1 identified by match to protein family HMM PF07719 YP_002896526.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_002896528.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_002896532.1 identified by match to protein family HMM PF00501 YP_002896534.1 identified by match to protein family HMM PF00440 YP_002896535.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002896537.1 identified by match to protein family HMM PF00583 YP_002896538.1 identified by match to protein family HMM PF08857 YP_002896539.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740 YP_002896541.1 identified by match to protein family HMM PF04185 YP_002896543.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002896545.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_002896546.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_002896548.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510 YP_002896549.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_002896550.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002896551.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408 YP_002896552.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896553.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002896554.1 identified by match to protein family HMM PF00497 YP_002896555.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_002896556.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_002896557.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_002896558.1 identified by match to protein family HMM PF00293 YP_002896559.1 identified by match to protein family HMM PF03928 YP_002896560.1 identified by match to protein family HMM PF00893 YP_002896561.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_002896563.1 identified by glimmer; putative YP_002896565.1 catalyzes the release of sulfite from alkanesulfonates YP_002896566.1 identified by match to protein family HMM PF00528 YP_002896567.1 identified by match to protein family HMM PF00005 YP_002896568.1 identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638 YP_002896571.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742 YP_002896573.1 identified by match to protein family HMM PF00375 YP_002896574.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896575.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896576.1 identified by match to protein family HMM PF01638 YP_002896577.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_002896578.1 identified by match to protein family HMM PF00248 YP_002896579.1 identified by match to protein family HMM PF03773 YP_002896581.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR01291 YP_002896582.1 involved in the export of lipooligosaccharides during nodulation YP_002896583.1 identified by match to protein family HMM PF00582 YP_002896587.1 Represses a number of genes involved in the response to DNA damage YP_002896589.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971 YP_002896590.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139 YP_002896591.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140 YP_002896592.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; match to protein family HMM TIGR00968 YP_002896593.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002896595.1 identified by match to protein family HMM PF00532 YP_002896597.1 identified by match to protein family HMM PF00005 YP_002896598.1 identified by match to protein family HMM PF02653 YP_002896599.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002896600.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08543; match to protein family HMM TIGR02152 YP_002896601.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002896603.1 identified by match to protein family HMM PF06798; match to protein family HMM PF08298 YP_002896604.1 identified by match to protein family HMM PF04285 YP_002896605.1 identified by match to protein family HMM PF04293 YP_002896607.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883 YP_002896610.1 identified by match to protein family HMM PF01610 YP_002896611.1 identified by match to protein family HMM PF00005 YP_002896612.1 identified by match to protein family HMM PF00528 YP_002896613.1 identified by match to protein family HMM PF04964 YP_002896614.1 identified by match to protein family HMM PF01478 YP_002896615.1 identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177 YP_002896616.1 identified by match to protein family HMM PF00263 YP_002896619.1 identified by match to protein family HMM PF00437 YP_002896620.1 identified by match to protein family HMM PF00482 YP_002896621.1 identified by match to protein family HMM PF00482 YP_002896622.1 identified by match to protein family HMM PF07719; match to protein family HMM PF07721 YP_002896623.1 identified by match to protein family HMM PF07811 YP_002896624.1 identified by match to protein family HMM PF07811 YP_002896625.1 identified by match to protein family HMM PF00497 YP_002896628.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002896629.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002896630.1 identified by match to protein family HMM PF01551 YP_002896631.1 identified by match to protein family HMM PF00440; match to protein family HMM PF08361 YP_002896632.1 MexX; AmrA; involved in resistance to antibiotics; periplasmic membrane fusion protein; functions along with MexY and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery YP_002896633.1 MexY; AmrB; involved in resistance to antibiotics; inner membrane protein; belongs to RND (resistance, nodulation, cell division) family of transporters; functions along with MexX and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery YP_002896634.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_002896637.1 identified by glimmer; putative YP_002896640.1 identified by glimmer; putative YP_002896641.1 identified by match to protein family HMM PF00419 YP_002896642.1 identified by match to protein family HMM PF00577 YP_002896643.1 identified by match to protein family HMM PF00345 YP_002896645.1 identified by match to protein family HMM PF00005 YP_002896647.1 identified by match to protein family HMM PF00733 YP_002896651.1 identified by match to protein family HMM PF00165 YP_002896652.1 identified by match to protein family HMM PF00532 YP_002896653.1 identified by match to protein family HMM PF00005 YP_002896654.1 identified by match to protein family HMM PF02653 YP_002896656.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002896657.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002896658.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002896660.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896661.1 RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease YP_002896662.1 identified by match to protein family HMM PF03621 YP_002896663.1 identified by match to protein family HMM PF02668 YP_002896664.1 identified by match to protein family HMM PF00005 YP_002896665.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome YP_002896667.1 identified by match to protein family HMM PF01497 YP_002896668.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF09351 YP_002896669.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01194 YP_002896671.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_002896672.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_002896674.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_002896676.1 identified by match to protein family HMM PF01656; match to protein family HMM PF07685 YP_002896677.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_002896678.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3 YP_002896679.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896680.1 identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802 YP_002896681.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475 YP_002896682.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism YP_002896684.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07726; match to protein family HMM PF07728 YP_002896687.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02230 YP_002896688.1 identified by glimmer; putative YP_002896690.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002896691.1 identified by match to protein family HMM PF02839 YP_002896692.1 identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466 YP_002896693.1 catalyzes the formation of precorrin-3 from precorrin-2 YP_002896694.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate YP_002896695.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02435 YP_002896697.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469 YP_002896698.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_002896699.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_002896700.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_002896701.1 identified by match to protein family HMM PF02638 YP_002896702.1 identified by match to protein family HMM PF07690 YP_002896703.1 identified by match to protein family HMM PF01047 YP_002896704.1 identified by match to protein family HMM PF01094 YP_002896705.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896706.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896707.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002896708.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_002896709.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002896710.1 identified by match to protein family HMM PF03928 YP_002896711.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002896712.1 identified by glimmer; putative YP_002896713.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_002896714.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway YP_002896715.1 catalyzes the degradation of arginine to citruline and ammonia YP_002896716.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905 YP_002896717.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896719.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896721.1 identified by match to protein family HMM PF00528 YP_002896722.1 identified by match to protein family HMM PF00005 YP_002896723.1 identified by match to protein family HMM PF00528 YP_002896724.1 identified by match to protein family HMM PF04069 YP_002896726.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002896727.1 identified by match to protein family HMM PF07690 YP_002896728.1 identified by match to protein family HMM PF00501 YP_002896731.1 identified by match to protein family HMM PF00015 YP_002896732.1 identified by match to protein family HMM PF01584 YP_002896734.1 identified by match to protein family HMM PF00892 YP_002896735.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_002896736.1 identified by glimmer; putative YP_002896737.1 identified by match to protein family HMM PF00267 YP_002896739.1 identified by match to protein family HMM PF00975 YP_002896740.1 identified by match to protein family HMM PF03621 YP_002896741.1 identified by match to protein family HMM PF02373 YP_002896742.1 identified by match to protein family HMM PF00155 YP_002896744.1 identified by match to protein family HMM PF00551 YP_002896745.1 identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032 YP_002896746.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838 YP_002896747.1 identified by match to protein family HMM PF00288 YP_002896748.1 identified by match to protein family HMM PF07690 YP_002896750.1 identified by match to protein family HMM PF00291 YP_002896751.1 identified by match to protein family HMM PF00206; match to protein family HMM PF02222; match to protein family HMM PF02655 YP_002896752.1 identified by match to protein family HMM PF00202; match to protein family HMM PF01212 YP_002896753.1 identified by match to protein family HMM PF00583 YP_002896754.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_002896756.1 identified by match to protein family HMM PF02543 YP_002896757.1 identified by match to protein family HMM PF01804 YP_002896758.1 identified by glimmer; putative YP_002896761.1 identified by match to protein family HMM PF00657; match to protein family HMM PF01344; match to protein family HMM PF07646; match to protein family HMM PF09118 YP_002896763.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002896764.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002896765.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662 YP_002896766.1 identified by glimmer; putative YP_002896767.1 identified by match to protein family HMM PF01527 YP_002896768.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896769.1 identified by match to protein family HMM PF00239 YP_002896770.1 identified by glimmer; putative YP_002896771.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002896772.1 identified by glimmer; putative YP_002896773.1 identified by glimmer; putative YP_002896774.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002896776.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:ABK13593.1 YP_002896777.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896778.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_002896779.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002896780.1 identified by match to protein family HMM PF02371 YP_002896781.1 identified by glimmer; putative YP_002896784.1 identified by match to protein family HMM PF05114 YP_002896786.1 identified by match to protein family HMM PF07681 YP_002896787.1 identified by match to protein family HMM PF06532 YP_002896788.1 identified by match to protein family HMM PF06532 YP_002896789.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002896790.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896791.1 identified by similarity to GB:AAA25862.1 YP_002896792.1 identified by glimmer; putative YP_002896793.1 identified by match to protein family HMM PF00581 YP_002896794.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_002896795.1 identified by match to protein family HMM PF01979 YP_002896796.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002896797.1 identified by match to protein family HMM PF06032 YP_002896798.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_002896799.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002896800.1 identified by match to protein family HMM PF00221 YP_002896802.1 identified by match to protein family HMM PF00267 YP_002896804.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002896806.1 identified by glimmer; putative YP_002896807.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896808.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002896809.1 identified by glimmer; putative YP_002896810.1 identified by glimmer; putative YP_002896811.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_002896812.1 identified by glimmer; putative YP_002896814.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; match to protein family HMM PF07723; match to protein family HMM PF08241 YP_002896815.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 YP_002896816.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002896819.1 identified by match to protein family HMM PF00353; match to protein family HMM PF01839 YP_002896820.1 identified by match to protein family HMM PF02321 YP_002896821.1 identified by match to protein family HMM PF00691 YP_002896822.1 identified by match to protein family HMM PF00816 YP_002896825.1 identified by match to protein family HMM PF00267 YP_002896826.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_002896827.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002896828.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_002896829.1 identified by match to protein family HMM PF00528 YP_002896830.1 identified by match to protein family HMM PF00528 YP_002896831.1 identified by match to protein family HMM PF01547 YP_002896832.1 identified by match to protein family HMM PF07978 YP_002896833.1 identified by match to protein family HMM PF00171 YP_002896834.1 identified by match to protein family HMM PF00296 YP_002896835.1 identified by match to protein family HMM PF01613 YP_002896836.1 identified by match to protein family HMM PF00561 YP_002896837.1 identified by match to protein family HMM PF06684 YP_002896838.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002896839.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002896840.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002896841.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896842.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896844.1 identified by match to protein family HMM PF01764 YP_002896845.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002896847.1 identified by glimmer; putative YP_002896848.1 identified by glimmer; putative YP_002896849.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896850.1 identified by match to protein family HMM PF00563 YP_002896851.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_002896852.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545; match to protein family HMM PF08281 YP_002896854.1 identified by glimmer; putative YP_002896855.1 identified by glimmer; putative YP_002896857.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662 YP_002896860.1 identified by match to protein family HMM PF00419 YP_002896861.1 identified by match to protein family HMM PF00577 YP_002896862.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_002896863.1 identified by match to protein family HMM PF00419 YP_002896864.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896865.1 identified by match to protein family HMM PF08670 YP_002896867.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896868.1 identified by match to protein family HMM TIGR01840 YP_002896871.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00465 YP_002896872.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896873.1 identified by glimmer; putative YP_002896877.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820 YP_002896878.1 identified by match to protein family HMM PF00999 YP_002896879.1 identified by match to protein family HMM PF00355 YP_002896881.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_002896883.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002896884.1 identified by match to protein family HMM PF01061 YP_002896885.1 identified by match to protein family HMM PF00005 YP_002896886.1 identified by match to protein family HMM PF02424 YP_002896887.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896888.1 reduces nitrous oxide to nitrogen YP_002896889.1 identified by match to protein family HMM PF05048 YP_002896890.1 identified by match to protein family HMM PF00005 YP_002896892.1 identified by match to protein family HMM PF05573 YP_002896895.1 identified by match to protein family HMM PF00034 YP_002896896.1 identified by match to protein family HMM PF04205 YP_002896897.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896898.1 identified by match to protein family HMM PF00924 YP_002896899.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896900.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002896903.1 identified by glimmer; putative YP_002896906.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_002896907.1 identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383 YP_002896908.1 identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106 YP_002896910.1 identified by match to protein family HMM PF01210; match to protein family HMM PF02254; match to protein family HMM PF02737; match to protein family HMM PF03435 YP_002896911.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896912.1 identified by glimmer; putative YP_002896913.1 identified by match to protein family HMM PF01610 YP_002896916.1 identified by match to protein family HMM PF01037 YP_002896917.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896918.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896919.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896925.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002896926.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002896927.1 identified by match to protein family HMM PF07690 YP_002896928.1 identified by match to protein family HMM PF00294 YP_002896929.1 identified by match to protein family HMM PF01261 YP_002896932.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002896933.1 identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698 YP_002896934.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00654 YP_002896935.1 identified by match to protein family HMM PF00440 YP_002896936.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_002896937.1 identified by match to protein family HMM PF00873 YP_002896938.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_002896939.1 identified by glimmer; putative YP_002896940.1 identified by match to protein family HMM PF00376; match to protein family HMM PF05583; match to protein family HMM PF09278 YP_002896941.1 identified by glimmer; putative YP_002896945.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF07728; match to protein family HMM PF08448 YP_002896946.1 identified by match to protein family HMM PF00753 YP_002896947.1 identified by match to protein family HMM PF04273; match to protein family HMM PF07992; match to protein family HMM TIGR01244 YP_002896948.1 identified by match to protein family HMM PF01925 YP_002896949.1 identified by match to protein family HMM PF00528 YP_002896950.1 identified by match to protein family HMM PF00528 YP_002896951.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187 YP_002896952.1 identified by match to protein family HMM PF01547 YP_002896953.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_002896954.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896955.1 identified by match to protein family HMM PF06945 YP_002896956.1 identified by match to protein family HMM PF03922 YP_002896957.1 identified by match to protein family HMM PF03060 YP_002896958.1 identified by match to protein family HMM PF00171 YP_002896960.1 identified by match to protein family HMM PF00005 YP_002896961.1 identified by match to protein family HMM PF05170 YP_002896962.1 identified by match to protein family HMM PF00005 YP_002896963.1 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245 YP_002896966.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002896967.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_002896968.1 catalyzes the formation of L-homocysteine from cystathionine YP_002896970.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA YP_002896971.1 identified by match to protein family HMM PF00294 YP_002896972.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_002896973.1 identified by match to protein family HMM PF05233; match to protein family HMM PF07879; match to protein family HMM TIGR01848 YP_002896974.1 catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis YP_002896975.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_002896976.1 identified by match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01838 YP_002896977.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_002896978.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_002896979.1 identified by match to protein family HMM TIGR03302 YP_002896984.1 identified by match to protein family HMM PF00575; match to protein family HMM PF09371 YP_002896985.1 identified by match to protein family HMM PF02705 YP_002896987.1 identified by match to protein family HMM PF00156 YP_002896988.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002896989.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_002896991.1 identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932 YP_002896992.1 identified by match to protein family HMM PF01145; match to protein family HMM TIGR01933 YP_002896993.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156 YP_002896994.1 Stimulates the elongation of poly(A) tails YP_002896995.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002896997.1 identified by match to protein family HMM PF01011; match to protein family HMM TIGR03300 YP_002896999.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002897000.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002897002.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_002897003.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_002897004.1 identified by match to protein family HMM PF01027 YP_002897005.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_002897006.1 identified by match to protein family HMM PF03372 YP_002897008.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses YP_002897009.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_002897010.1 identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080 YP_002897011.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_002897012.1 identified by glimmer; putative YP_002897013.1 identified by match to protein family HMM PF02515 YP_002897014.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002897015.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_002897016.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_002897018.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_002897020.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002897021.1 identified by match to protein family HMM PF00376 YP_002897022.1 identified by match to protein family HMM PF07690 YP_002897023.1 identified by match to protein family HMM PF06167 YP_002897024.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_002897026.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002897028.1 identified by match to protein family HMM PF02627 YP_002897029.1 identified by match to protein family HMM PF00376; match to protein family HMM PF09278 YP_002897031.1 identified by match to protein family HMM PF06078 YP_002897032.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346 YP_002897034.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002897035.1 identified by match to protein family HMM PF01152 YP_002897036.1 identified by match to protein family HMM PF02391 YP_002897037.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_002897038.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_002897039.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897040.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002897041.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002897042.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_002897043.1 identified by match to protein family HMM PF04430 YP_002897044.1 identified by match to protein family HMM PF02366 YP_002897046.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_002897047.1 identified by match to protein family HMM PF00535 YP_002897048.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911 YP_002897049.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370 YP_002897050.1 identified by match to protein family HMM PF01522 YP_002897051.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002897053.1 identified by match to protein family HMM PF02562 YP_002897054.1 identified by glimmer; putative YP_002897055.1 identified by match to protein family HMM PF00877 YP_002897056.1 identified by glimmer; putative YP_002897057.1 identified by match to protein family HMM PF01384 YP_002897058.1 identified by match to protein family HMM PF01865 YP_002897059.1 unwinds double stranded DNA YP_002897061.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002897062.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002897064.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002897066.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002897068.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409 YP_002897069.1 identified by match to protein family HMM PF00116 YP_002897070.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002897071.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate YP_002897072.1 identified by match to protein family HMM PF01261; match to protein family HMM TIGR03234 YP_002897073.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01505 YP_002897074.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897075.1 identified by match to protein family HMM PF01476 YP_002897077.1 identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520 YP_002897079.1 identified by match to protein family HMM PF07769 YP_002897083.1 identified by match to protein family HMM PF00534 YP_002897085.1 identified by match to protein family HMM PF00924 YP_002897087.1 identified by match to protein family HMM PF00023 YP_002897088.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_002897089.1 identified by match to protein family HMM PF00583 YP_002897090.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_002897091.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_002897092.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_002897093.1 identified by match to protein family HMM TIGR03317 YP_002897094.1 identified by match to protein family HMM PF05742 YP_002897095.1 identified by match to protein family HMM PF00583 YP_002897096.1 identified by match to protein family HMM PF07859 YP_002897097.1 identified by match to protein family HMM PF00107 YP_002897098.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_002897099.1 identified by match to protein family HMM PF03992; match to protein family HMM PF07876 YP_002897100.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897102.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002897103.1 identified by match to protein family HMM PF00857 YP_002897104.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_002897106.1 activates fatty acids by binding to coenzyme A YP_002897107.1 identified by match to protein family HMM PF02696 YP_002897108.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357 YP_002897109.1 Involved in cell division; probably involved in intracellular septation YP_002897110.1 identified by match to protein family HMM PF01722 YP_002897111.1 identified by match to protein family HMM PF00639 YP_002897112.1 identified by match to protein family HMM PF00583 YP_002897113.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_002897115.1 identified by match to protein family HMM PF01266 YP_002897116.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_002897118.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_002897119.1 identified by match to protein family HMM PF00005 YP_002897120.1 identified by match to protein family HMM PF00657 YP_002897121.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897122.1 identified by match to protein family HMM PF00639 YP_002897124.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897125.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897126.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897129.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897132.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_002897133.1 identified by glimmer; putative YP_002897134.1 binds and unfolds substrates as part of the ClpXP protease YP_002897135.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002897136.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002897137.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897138.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_002897139.1 identified by match to protein family HMM PF01047 YP_002897140.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897141.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_002897142.1 identified by match to protein family HMM PF00196; match to protein family HMM PF04545; match to protein family HMM PF04967; match to protein family HMM PF08281 YP_002897143.1 identified by match to protein family HMM PF00267 YP_002897144.1 identified by match to protein family HMM PF07690 YP_002897145.1 identified by match to protein family HMM PF00850 YP_002897151.1 identified by match to protein family HMM PF05488 YP_002897156.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897157.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897158.1 identified by match to protein family HMM PF00494; match to protein family HMM TIGR03465 YP_002897159.1 identified by match to protein family HMM PF07394; match to protein family HMM TIGR01409 YP_002897160.1 identified by match to protein family HMM PF08811 YP_002897163.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation YP_002897164.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002897165.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002897166.1 identified by match to protein family HMM PF02627 YP_002897167.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_002897168.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_002897169.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_002897171.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_002897172.1 identified by match to protein family HMM PF00291 YP_002897177.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002897179.1 identified by glimmer; putative YP_002897180.1 identified by match to protein family HMM PF04012 YP_002897181.1 identified by match to protein family HMM PF07719 YP_002897182.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_002897183.1 identified by glimmer; putative YP_002897185.1 identified by match to protein family HMM PF03446 YP_002897186.1 identified by match to protein family HMM PF07311 YP_002897187.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897188.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002897189.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway. YP_002897192.1 identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962 YP_002897193.1 identified by match to protein family HMM PF06181 YP_002897195.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_002897196.1 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_002897197.1 identified by match to protein family HMM PF09349; match to protein family HMM TIGR03164 YP_002897198.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR03212 YP_002897199.1 identified by match to protein family HMM PF01177 YP_002897200.1 identified by match to protein family HMM PF02133 YP_002897202.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002897203.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine YP_002897204.1 identified by match to protein family HMM PF00383 YP_002897205.1 identified by match to protein family HMM PF09350 YP_002897207.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897208.1 identified by match to protein family HMM PF09351 YP_002897209.1 identified by match to protein family HMM PF07690 YP_002897214.1 identified by match to protein family HMM PF02463 YP_002897218.1 identified by glimmer; putative YP_002897220.1 identified by match to protein family HMM PF08843 YP_002897222.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002897225.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_002897226.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897227.1 identified by match to protein family HMM PF05988 YP_002897231.1 identified by match to protein family HMM PF03658 YP_002897232.1 identified by match to protein family HMM PF03364 YP_002897234.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_002897235.1 identified by match to protein family HMM PF01145 YP_002897236.1 identified by match to protein family HMM PF01957 YP_002897237.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002897239.1 identified by match to protein family HMM PF05023 YP_002897240.1 identified by match to protein family HMM PF00082; match to protein family HMM PF09286 YP_002897242.1 identified by match to protein family HMM PF03618 YP_002897243.1 identified by match to protein family HMM PF00588 YP_002897244.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002897245.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_002897246.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_002897247.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_002897248.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_002897249.1 identified by match to protein family HMM PF03938 YP_002897250.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303 YP_002897252.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_002897253.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002897254.1 identified by match to protein family HMM PF01148 YP_002897255.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_002897256.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002897257.1 Catalyzes the phosphorylation of UMP to UDP YP_002897258.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002897259.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002897260.1 identified by glimmer; putative YP_002897261.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_002897262.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_002897263.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002897264.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002897265.1 identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 YP_002897268.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_002897269.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151 YP_002897270.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate YP_002897271.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_002897272.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_002897273.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_002897274.1 involved in methylation of ribosomal protein L3 YP_002897275.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_002897276.1 identified by match to protein family HMM PF00255 YP_002897277.1 identified by match to protein family HMM PF00005 YP_002897279.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002897280.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_002897281.1 identified by match to protein family HMM PF07690 YP_002897282.1 identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097 YP_002897284.1 identified by match to protein family HMM PF08907 YP_002897285.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_002897286.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_002897287.1 identified by match to protein family HMM PF00814 YP_002897288.1 identified by match to protein family HMM PF00887 YP_002897289.1 identified by glimmer; putative YP_002897290.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002897291.1 identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346 YP_002897292.1 identified by match to protein family HMM PF00582 YP_002897294.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002897295.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_002897296.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_002897297.1 identified by match to protein family HMM PF06094 YP_002897298.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_002897299.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_002897300.1 identified by match to protein family HMM PF00583 YP_002897301.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002897302.1 identified by match to protein family HMM PF01734 YP_002897303.1 identified by glimmer; putative YP_002897304.1 identified by match to protein family HMM PF00877 YP_002897305.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352 YP_002897306.1 identified by match to protein family HMM PF00528 YP_002897307.1 identified by match to protein family HMM PF00528 YP_002897308.1 identified by match to protein family HMM PF00496 YP_002897309.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_002897312.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_002897313.1 identified by glimmer; putative YP_002897314.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970 YP_002897315.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF06463 YP_002897316.1 identified by match to protein family HMM PF00037 YP_002897317.1 identified by match to protein family HMM PF00440 YP_002897318.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_002897320.1 identified by glimmer; putative YP_002897321.1 identified by match to protein family HMM PF00206; match to protein family HMM PF02222; match to protein family HMM PF02655 YP_002897322.1 identified by match to protein family HMM PF00291 YP_002897323.1 identified by match to protein family HMM PF00288 YP_002897324.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_002897325.1 identified by match to protein family HMM PF00535 YP_002897326.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_002897327.1 identified by match to protein family HMM PF01757 YP_002897329.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002897330.1 identified by match to protein family HMM PF00456 YP_002897333.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002897334.1 identified by match to protein family HMM PF02668 YP_002897336.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_002897337.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897339.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_002897340.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733 YP_002897341.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_002897342.1 identified by glimmer; putative YP_002897346.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01409; match to protein family HMM TIGR01730 YP_002897347.1 identified by match to protein family HMM PF00873 YP_002897349.1 identified by match to protein family HMM PF00657; match to protein family HMM PF03797; match to protein family HMM TIGR01414 YP_002897352.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_002897354.1 identified by match to protein family HMM PF01171; match to protein family HMM PF09179; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_002897355.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_002897356.1 identified by match to protein family HMM PF00730 YP_002897357.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002897358.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002897359.1 identified by match to protein family HMM PF00160 YP_002897360.1 identified by match to protein family HMM PF00160 YP_002897361.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_002897362.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897363.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_002897364.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050 YP_002897365.1 identified by match to protein family HMM PF00459 YP_002897367.1 identified by glimmer; putative YP_002897372.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897375.1 identified by glimmer; putative YP_002897377.1 identified by match to protein family HMM PF05488 YP_002897382.1 identified by match to protein family HMM PF02086 YP_002897384.1 identified by match to protein family HMM PF00959 YP_002897387.1 identified by match to protein family HMM PF05954 YP_002897388.1 identified by match to protein family HMM PF05489 YP_002897389.1 identified by match to protein family HMM PF06995 YP_002897390.1 identified by match to protein family HMM TIGR01760 YP_002897391.1 identified by glimmer; putative YP_002897393.1 identified by match to protein family HMM PF04985; match to protein family HMM TIGR01611 YP_002897394.1 identified by match to protein family HMM PF04984 YP_002897397.1 identified by match to protein family HMM PF09684; match to protein family HMM TIGR01634 YP_002897398.1 identified by match to protein family HMM PF04865 YP_002897399.1 identified by match to protein family HMM PF04965 YP_002897401.1 identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644 YP_002897407.1 identified by match to protein family HMM PF00574 YP_002897408.1 identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539 YP_002897410.1 identified by match to protein family HMM PF05876 YP_002897411.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002897414.1 identified by match to protein family HMM PF05272 YP_002897416.1 identified by glimmer; putative YP_002897418.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002897419.1 identified by glimmer; putative YP_002897421.1 identified by glimmer; putative YP_002897422.1 identified by glimmer; putative YP_002897423.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002897424.1 identified by glimmer; putative YP_002897425.1 identified by glimmer; putative YP_002897426.1 identified by glimmer; putative YP_002897427.1 identified by match to protein family HMM PF00589 YP_002897428.1 This protein performs the mismatch recognition step during the DNA repair process YP_002897431.1 identified by match to protein family HMM PF08007 YP_002897432.1 identified by match to protein family HMM PF00753 YP_002897434.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002897436.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002897437.1 identified by match to protein family HMM PF02163 YP_002897438.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_002897439.1 identified by match to protein family HMM PF02811 YP_002897440.1 identified by glimmer; putative YP_002897441.1 identified by match to protein family HMM PF00561 YP_002897442.1 identified by match to protein family HMM PF04305 YP_002897443.1 identified by match to protein family HMM PF00132 YP_002897444.1 identified by match to protein family HMM PF01430 YP_002897446.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein YP_002897447.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002897448.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_002897449.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002897452.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_002897453.1 identified by match to protein family HMM PF01026 YP_002897454.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02211 YP_002897455.1 identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212 YP_002897456.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897459.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_002897460.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_002897461.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002897462.1 identified by match to protein family HMM PF05433 YP_002897463.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897464.1 identified by match to protein family HMM PF04384; match to protein family HMM TIGR03412 YP_002897465.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007 YP_002897466.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_002897467.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_002897468.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011 YP_002897469.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999 YP_002897470.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis YP_002897471.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; match to protein family HMM TIGR02010 YP_002897472.1 identified by match to protein family HMM PF01451 YP_002897474.1 identified by match to protein family HMM PF02589 YP_002897475.1 identified by match to protein family HMM PF02754 YP_002897476.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002897477.1 identified by match to protein family HMM PF00768 YP_002897478.1 identified by glimmer; putative YP_002897479.1 identified by match to protein family HMM PF09361; match to protein family HMM TIGR01841 YP_002897480.1 identified by match to protein family HMM PF01609 YP_002897481.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_002897482.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01348 YP_002897483.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_002897485.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002897486.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281 YP_002897487.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002897489.1 identified by match to protein family HMM PF01432 YP_002897490.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002897492.1 identified by match to protein family HMM PF07690 YP_002897493.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886 YP_002897495.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01580 YP_002897496.1 identified by match to protein family HMM TIGR01660 YP_002897497.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_002897498.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_002897499.1 identified by match to protein family HMM PF00672; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002897500.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04967 YP_002897501.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_002897502.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR01818 YP_002897503.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002897504.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_002897507.1 identified by match to protein family HMM PF00994 YP_002897510.1 identified by match to protein family HMM PF04116 YP_002897511.1 identified by match to protein family HMM PF02239 YP_002897513.1 identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967 YP_002897514.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_002897515.1 identified by match to protein family HMM PF04362 YP_002897516.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002897518.1 identified by match to protein family HMM PF02515 YP_002897519.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_002897520.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002897523.1 identified by match to protein family HMM PF00202 YP_002897524.1 identified by match to protein family HMM PF00120 YP_002897525.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_002897527.1 identified by glimmer; putative YP_002897528.1 identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017 YP_002897530.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_002897531.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_002897532.1 identified by match to protein family HMM PF05962 YP_002897533.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_002897534.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018 YP_002897535.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_002897536.1 identified by glimmer; putative YP_002897537.1 identified by match to protein family HMM PF01648 YP_002897539.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897540.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472; match to protein family HMM PF04967 YP_002897543.1 identified by glimmer; putative YP_002897544.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_002897545.1 identified by match to protein family HMM PF00875; match to protein family HMM PF03441 YP_002897546.1 identified by match to protein family HMM PF00487 YP_002897549.1 identified by match to protein family HMM PF01883 YP_002897551.1 identified by match to protein family HMM PF05940 YP_002897553.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002897554.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897555.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495 YP_002897557.1 identified by match to protein family HMM PF08859 YP_002897559.1 identified by match to protein family HMM PF01136 YP_002897560.1 identified by match to protein family HMM PF01136 YP_002897561.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897562.1 identified by match to protein family HMM PF03060 YP_002897564.1 identified by match to protein family HMM PF00027 YP_002897565.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002897566.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002897569.1 identified by match to protein family HMM PF05940 YP_002897571.1 with SufCD activates cysteine desulfurase SufS YP_002897572.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_002897573.1 identified by match to protein family HMM PF01458 YP_002897574.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212 YP_002897575.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994 YP_002897576.1 identified by match to protein family HMM PF01883; match to protein family HMM TIGR03406 YP_002897579.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002897580.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_002897582.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002897583.1 identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433 YP_002897584.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843 YP_002897585.1 identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842 YP_002897586.1 identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847 YP_002897587.1 identified by match to protein family HMM PF00487 YP_002897589.1 identified by match to protein family HMM PF00497 YP_002897590.1 identified by match to protein family HMM PF00043 YP_002897591.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism YP_002897592.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_002897593.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH YP_002897594.1 identified by match to protein family HMM PF04958; match to protein family HMM TIGR03243; match to protein family HMM TIGR03244 YP_002897595.1 identified by match to protein family HMM PF04958; match to protein family HMM TIGR03243; match to protein family HMM TIGR03245 YP_002897596.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate YP_002897598.1 identified by match to protein family HMM PF00165 YP_002897599.1 identified by match to protein family HMM PF00005 YP_002897600.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002897601.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002897604.1 identified by match to protein family HMM TIGR03476 YP_002897605.1 identified by match to protein family HMM PF04794; match to protein family HMM TIGR03473 YP_002897606.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR03471 YP_002897607.1 identified by match to protein family HMM PF00535; match to protein family HMM TIGR03472 YP_002897608.1 identified by match to protein family HMM PF00296; match to protein family HMM TIGR03558 YP_002897609.1 identified by match to protein family HMM PF00561 YP_002897611.1 identified by match to protein family HMM TIGR00687 YP_002897613.1 identified by match to protein family HMM PF04185; match to protein family HMM PF05506; match to protein family HMM TIGR01409; match to protein family HMM TIGR03396 YP_002897614.1 identified by match to protein family HMM PF01094 YP_002897616.1 identified by match to protein family HMM PF01266 YP_002897617.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897619.1 identified by match to protein family HMM PF00534 YP_002897622.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005 YP_002897623.1 identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400 YP_002897624.1 identified by match to protein family HMM PF02358; match to protein family HMM PF08282; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484 YP_002897626.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897627.1 identified by match to protein family HMM PF02630 YP_002897628.1 identified by match to protein family HMM PF04314 YP_002897629.1 identified by match to protein family HMM PF09678 YP_002897630.1 identified by match to protein family HMM PF00583 YP_002897631.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_002897632.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002897634.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_002897635.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002897638.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002897640.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954 YP_002897641.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_002897642.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_002897643.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_002897644.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_002897645.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002897646.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002897647.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002897648.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002897649.1 identified by match to protein family HMM PF05768 YP_002897650.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_002897651.1 identified by match to protein family HMM PF03888 YP_002897652.1 identified by match to protein family HMM PF03872 YP_002897653.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_002897655.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002897656.1 carries the fatty acid chain in fatty acid biosynthesis YP_002897657.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002897658.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_002897659.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002897660.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002897661.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002897662.1 identified by match to protein family HMM PF02620 YP_002897663.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_002897664.1 identified by match to protein family HMM PF00590 YP_002897665.1 identified by match to protein family HMM PF01343 YP_002897666.1 identified by match to protein family HMM PF00355 YP_002897667.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_002897668.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_002897669.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_002897670.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_002897671.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_002897672.1 identified by glimmer; putative YP_002897673.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_002897675.1 identified by match to protein family HMM PF00583 YP_002897676.1 identified by match to protein family HMM PF02646 YP_002897677.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002897679.1 identified by match to protein family HMM PF02589 YP_002897680.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_002897682.1 identified by match to protein family HMM PF00037 YP_002897683.1 identified by match to protein family HMM PF05981 YP_002897684.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:ABA49716.1 YP_002897685.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by similarity to GB:ABA49716.1 YP_002897689.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002897691.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_002897692.1 identified by match to protein family HMM PF03061 YP_002897695.1 identified by match to protein family HMM PF01022 YP_002897697.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_002897698.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_002897705.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_002897706.1 identified by match to protein family HMM PF00186 YP_002897707.1 identified by match to protein family HMM PF01609 YP_002897708.1 identified by match to protein family HMM PF01523 YP_002897710.1 identified by match to protein family HMM PF04751 YP_002897711.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis YP_002897712.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_002897713.1 identified by match to protein family HMM PF01435 YP_002897714.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_002897716.1 identified by match to protein family HMM PF03186 YP_002897717.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00293 YP_002897719.1 identified by match to protein family HMM PF00583 YP_002897720.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002897721.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002897722.1 Essential for efficient processing of 16S rRNA YP_002897723.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_002897726.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF04055 YP_002897727.1 identified by match to protein family HMM PF01037 YP_002897728.1 catalyzes the oxidative deamination of D-amino acids YP_002897729.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_002897730.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_002897731.1 identified by match to protein family HMM PF01012 YP_002897732.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_002897733.1 identified by match to protein family HMM PF00528 YP_002897734.1 part of the metNIQ transport system for methionine YP_002897735.1 identified by match to protein family HMM PF00561 YP_002897736.1 identified by match to protein family HMM PF00850 YP_002897737.1 identified by match to protein family HMM TIGR02282 YP_002897738.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_002897739.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002897740.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197 YP_002897741.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02198 YP_002897742.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002897743.1 identified by match to protein family HMM PF00515 YP_002897745.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_002897746.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002897747.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_002897748.1 fusion of tyrA/aroA YP_002897749.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807 YP_002897750.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_002897752.1 negatively supercoils closed circular double-stranded DNA YP_002897753.1 identified by glimmer; putative YP_002897754.1 identified by match to protein family HMM PF00691 YP_002897755.1 Involved in ubiquinone biosynthesis YP_002897756.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_002897757.1 identified by match to protein family HMM PF00589 YP_002897758.1 identified by glimmer; putative YP_002897759.1 identified by match to protein family HMM PF08707 YP_002897760.1 identified by glimmer; putative YP_002897765.1 identified by match to protein family HMM PF05930 YP_002897767.1 identified by match to protein family HMM PF03235 YP_002897770.1 identified by glimmer; putative YP_002897771.1 identified by glimmer; putative YP_002897773.1 identified by glimmer; putative YP_002897774.1 identified by glimmer; putative YP_002897775.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_002897777.1 identified by match to protein family HMM PF08242 YP_002897779.1 identified by match to protein family HMM PF00126 YP_002897782.1 identified by match to protein family HMM PF01512 YP_002897783.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_002897785.1 identified by match to protein family HMM PF01494 YP_002897786.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_002897788.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002897789.1 identified by glimmer; putative YP_002897790.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_002897792.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897793.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_002897794.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein YP_002897796.1 identified by match to protein family HMM PF02625; match to protein family HMM TIGR02964 YP_002897797.1 catalyzes the formation of inosine from adenosine YP_002897798.1 identified by match to protein family HMM PF00860 YP_002897799.1 Catalyzes the deamination of guanine YP_002897801.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01169 YP_002897804.1 identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414 YP_002897806.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_002897807.1 identified by glimmer; putative YP_002897808.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002897809.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_002897810.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897812.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897813.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897815.1 identified by match to protein family HMM PF04226 YP_002897818.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_002897822.1 catalyzes the interconversion of chorismate to prephenate YP_002897824.1 identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM TIGR00573 YP_002897825.1 identified by match to protein family HMM PF00313 YP_002897827.1 identified by match to protein family HMM PF00267 YP_002897828.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002897829.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_002897830.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_002897831.1 Essential for recycling GMP and indirectly, cGMP YP_002897832.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255 YP_002897833.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_002897834.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_002897835.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002897836.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897837.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897840.1 identified by match to protein family HMM TIGR01352 YP_002897842.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002897844.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193 YP_002897845.1 identified by match to protein family HMM PF00654 YP_002897847.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_002897848.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_002897849.1 blocks the formation of polar Z-ring septums YP_002897850.1 identified by match to protein family HMM PF00583 YP_002897851.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897853.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002897855.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07728 YP_002897856.1 participates with LolB in the incorporation of lipoprotein into the outer membrane YP_002897857.1 identified by match to protein family HMM PF01580; match to protein family HMM PF09397 YP_002897858.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_002897859.1 identified by match to protein family HMM PF01713 YP_002897860.1 identified by match to protein family HMM PF03458 YP_002897861.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002897862.1 identified by match to protein family HMM PF00528 YP_002897863.1 identified by match to protein family HMM PF00528 YP_002897865.1 identified by match to protein family HMM PF01547 YP_002897866.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002897867.1 identified by match to protein family HMM TIGR01198 YP_002897868.1 glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_002897869.1 identified by match to protein family HMM PF00497 YP_002897870.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002897871.1 identified by match to protein family HMM PF00005 YP_002897872.1 catalyzes the formation of pyruvate from D-cysteine YP_002897874.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_002897877.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_002897878.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_002897879.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002897882.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis YP_002897883.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002897884.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_002897885.1 identified by match to protein family HMM PF00155 YP_002897887.1 identified by match to protein family HMM PF01464 YP_002897888.1 identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148 YP_002897889.1 identified by match to protein family HMM PF01810 YP_002897890.1 catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine YP_002897893.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897894.1 identified by match to protein family HMM PF03807 YP_002897895.1 identified by match to protein family HMM PF02325 YP_002897896.1 identified by match to protein family HMM PF02641 YP_002897897.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002897899.1 identified by glimmer; putative YP_002897901.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002897903.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897904.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02146 YP_002897905.1 identified by glimmer; putative YP_002897907.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897908.1 identified by glimmer; putative YP_002897909.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06114 YP_002897911.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_002897912.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002897914.1 identified by match to protein family HMM PF03692 YP_002897916.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002897918.1 identified by match to protein family HMM PF01135; match to protein family HMM PF05175; match to protein family HMM PF08241 YP_002897919.1 identified by match to protein family HMM PF00581 YP_002897920.1 catalyze the conversion of beta amino acids to the corresponding beta keto acid with pyruvate as the amine acceptor YP_002897922.1 identified by match to protein family HMM TIGR01409; match to protein family HMM TIGR03407 YP_002897923.1 identified by match to protein family HMM PF02653; match to protein family HMM TIGR03409 YP_002897924.1 identified by match to protein family HMM PF02653; match to protein family HMM TIGR01409; match to protein family HMM TIGR03408 YP_002897925.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR03411 YP_002897926.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR03410 YP_002897927.1 identified by match to protein family HMM PF01774 YP_002897928.1 identified by glimmer; putative YP_002897929.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_002897930.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active YP_002897931.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_002897932.1 involved in the assembly of the urease metallocenter; possible nickel donor YP_002897933.1 identified by match to protein family HMM PF01730 YP_002897934.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101 YP_002897935.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A YP_002897937.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193 YP_002897938.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002897939.1 identified by match to protein family HMM PF01943 YP_002897940.1 identified by match to protein family HMM PF00535 YP_002897941.1 identified by match to protein family HMM PF00534 YP_002897942.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM PF08659; match to protein family HMM TIGR01179 YP_002897943.1 identified by match to protein family HMM PF00953 YP_002897945.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02629; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002897946.1 identified by match to protein family HMM PF00953 YP_002897947.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002897948.1 identified by match to protein family HMM PF00535 YP_002897949.1 identified by match to protein family HMM PF00535 YP_002897950.1 identified by match to protein family HMM PF00535; match to protein family HMM PF08242 YP_002897952.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002897953.1 identified by match to protein family HMM PF01757 YP_002897954.1 identified by match to protein family HMM PF00005 YP_002897955.1 identified by match to protein family HMM PF01061 YP_002897956.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_002897957.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_002897958.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_002897959.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_002897960.1 identified by glimmer; putative YP_002897961.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_002897962.1 identified by match to protein family HMM PF01553 YP_002897963.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_002897964.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002897965.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_002897966.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_002897967.1 identified by match to protein family HMM PF02622 YP_002897969.1 identified by match to protein family HMM PF00301 YP_002897970.1 identified by match to protein family HMM PF08543 YP_002897971.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002897972.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002897977.1 identified by glimmer; putative YP_002897978.1 identified by glimmer; putative YP_002897979.1 identified by match to protein family HMM PF01638 YP_002897980.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002897982.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897983.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897985.1 identified by match to protein family HMM PF03922 YP_002897989.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01638; match to protein family HMM PF03551 YP_002897990.1 identified by match to protein family HMM PF00753 YP_002897991.1 identified by match to protein family HMM PF01381 YP_002897992.1 identified by match to protein family HMM PF00583 YP_002897993.1 identified by match to protein family HMM PF01810 YP_002897994.1 identified by match to protein family HMM PF03009 YP_002897995.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002897996.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002897997.1 identified by match to protein family HMM PF01925 YP_002897998.1 identified by match to protein family HMM PF00450 YP_002898002.1 identified by match to protein family HMM PF04972 YP_002898005.1 identified by match to protein family HMM PF01323 YP_002898006.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002898007.1 identified by match to protein family HMM PF01032 YP_002898008.1 identified by match to protein family HMM PF01497 YP_002898009.1 identified by match to protein family HMM PF00005 YP_002898010.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_002898013.1 identified by match to protein family HMM PF01547 YP_002898014.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02965 YP_002898015.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450; match to protein family HMM TIGR02963 YP_002898016.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898017.1 identified by match to protein family HMM PF07690 YP_002898018.1 identified by match to protein family HMM PF00892 YP_002898019.1 identified by match to protein family HMM PF00165 YP_002898020.1 identified by match to protein family HMM PF00266 YP_002898022.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002898023.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002898024.1 identified by match to protein family HMM PF00881; match to protein family HMM TIGR02476 YP_002898025.1 identified by match to protein family HMM PF07690 YP_002898026.1 identified by match to protein family HMM PF07690 YP_002898027.1 identified by match to protein family HMM PF01557; match to protein family HMM PF09298; match to protein family HMM TIGR01266 YP_002898028.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine YP_002898029.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002898031.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_002898032.1 identified by match to protein family HMM PF00753 YP_002898034.1 identified by match to protein family HMM PF00563 YP_002898036.1 identified by match to protein family HMM PF04828 YP_002898037.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002898038.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002898039.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002898040.1 identified by match to protein family HMM PF05957 YP_002898045.1 identified by match to protein family HMM TIGR02532 YP_002898047.1 identified by match to protein family HMM TIGR02532 YP_002898048.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_002898049.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002898051.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659 YP_002898052.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; match to protein family HMM TIGR02799 YP_002898053.1 identified by match to protein family HMM PF01618; match to protein family HMM TIGR02796 YP_002898054.1 identified by match to protein family HMM PF02472; match to protein family HMM TIGR02801 YP_002898055.1 identified by match to protein family HMM PF06519; match to protein family HMM TIGR02794 YP_002898056.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_002898057.1 identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802 YP_002898058.1 identified by match to protein family HMM TIGR02795 YP_002898060.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002898062.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_002898064.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_002898065.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670 YP_002898066.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_002898067.1 identified by match to protein family HMM PF00534 YP_002898069.1 identified by match to protein family HMM PF00132 YP_002898070.1 identified by match to protein family HMM PF05159 YP_002898071.1 identified by match to protein family HMM PF01943 YP_002898072.1 identified by match to protein family HMM PF02706; match to protein family HMM TIGR01005; match to protein family HMM TIGR01007 YP_002898073.1 identified by match to protein family HMM PF01451 YP_002898074.1 identified by match to protein family HMM PF02563 YP_002898075.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025 YP_002898077.1 identified by match to protein family HMM PF00165 YP_002898078.1 identified by glimmer; putative YP_002898081.1 identified by match to protein family HMM PF01569 YP_002898083.1 identified by match to protein family HMM PF02012 YP_002898084.1 identified by glimmer; putative YP_002898086.1 identified by match to protein family HMM PF00155 YP_002898087.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_002898088.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF08240; match to protein family HMM PF08242; match to protein family HMM PF08659 YP_002898089.1 identified by match to protein family HMM PF00884 YP_002898090.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002898091.1 identified by match to protein family HMM PF05159 YP_002898092.1 identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 YP_002898093.1 identified by match to protein family HMM PF00483 YP_002898094.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_002898095.1 identified by match to protein family HMM PF00288; match to protein family HMM PF08544 YP_002898096.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002898097.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002898099.1 identified by match to protein family HMM PF00534 YP_002898101.1 identified by glimmer; putative YP_002898103.1 identified by match to protein family HMM PF00534 YP_002898104.1 identified by match to protein family HMM PF00005 YP_002898105.1 identified by match to protein family HMM PF01061 YP_002898107.1 identified by match to protein family HMM PF02563 YP_002898108.1 identified by match to protein family HMM PF00534 YP_002898110.1 identified by match to protein family HMM PF05159 YP_002898111.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_002898113.1 identified by match to protein family HMM PF00310 YP_002898114.1 identified by match to protein family HMM PF00924 YP_002898116.1 identified by match to protein family HMM PF09335 YP_002898117.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_002898118.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002898119.1 identified by match to protein family HMM TIGR02246 YP_002898120.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002898121.1 identified by match to protein family HMM PF00308; match to protein family HMM TIGR03420 YP_002898122.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_002898123.1 identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942 YP_002898124.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_002898125.1 identified by match to protein family HMM PF01712 YP_002898126.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_002898127.1 identified by match to protein family HMM PF00425 YP_002898128.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002898130.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002898131.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898132.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_002898134.1 identified by match to protein family HMM PF01479 YP_002898135.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_002898136.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_002898137.1 catalyzes the phosphorylation of NAD to NADP YP_002898138.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_002898139.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_002898140.1 identified by match to protein family HMM TIGR02099 YP_002898141.1 identified by match to protein family HMM PF00795 YP_002898142.1 identified by match to protein family HMM PF01523 YP_002898144.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_002898145.1 identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_002898146.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_002898147.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_002898148.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_002898149.1 identified by match to protein family HMM PF01565 YP_002898150.1 identified by match to protein family HMM PF02754 YP_002898151.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_002898152.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_002898153.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_002898154.1 identified by match to protein family HMM TIGR01098; match to protein family HMM TIGR03431 YP_002898155.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315 YP_002898156.1 identified by match to protein family HMM PF07969; match to protein family HMM TIGR02318 YP_002898157.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02324 YP_002898158.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02323 YP_002898159.1 identified by match to protein family HMM PF06007 YP_002898160.1 identified by match to protein family HMM PF05861 YP_002898161.1 identified by match to protein family HMM PF05845; match to protein family HMM TIGR03292 YP_002898162.1 identified by match to protein family HMM PF06754; match to protein family HMM TIGR03293 YP_002898163.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02325 YP_002898164.1 identified by match to protein family HMM PF06299; match to protein family HMM TIGR03223 YP_002898165.1 identified by match to protein family HMM TIGR02322 YP_002898166.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway YP_002898167.1 identified by match to protein family HMM PF01638 YP_002898168.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898169.1 identified by match to protein family HMM PF00210 YP_002898171.1 identified by glimmer; putative YP_002898172.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_002898174.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002898175.1 catalyzes branch migration in Holliday junction intermediates YP_002898176.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_002898177.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_002898178.1 identified by glimmer; putative YP_002898179.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_002898180.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_002898181.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_002898182.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002898183.1 identified by match to protein family HMM PF04264 YP_002898184.1 identified by match to protein family HMM PF04264 YP_002898185.1 identified by match to protein family HMM PF01292 YP_002898187.1 identified by match to protein family HMM PF04403 YP_002898188.1 identified by match to protein family HMM PF04403 YP_002898189.1 identified by match to protein family HMM PF02470 YP_002898190.1 identified by match to protein family HMM PF03886 YP_002898191.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898192.1 identified by glimmer; putative YP_002898194.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02926 YP_002898196.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898197.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898198.1 identified by match to protein family HMM PF08279 YP_002898199.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898200.1 identified by match to protein family HMM PF02233 YP_002898202.1 identified by match to protein family HMM PF01262; match to protein family HMM PF05222 YP_002898203.1 identified by match to protein family HMM PF00293 YP_002898204.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002898205.1 identified by match to protein family HMM PF01645 YP_002898206.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_002898207.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898208.1 identified by match to protein family HMM PF00557; match to protein family HMM PF05195 YP_002898209.1 identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988 YP_002898210.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_002898211.1 identified by match to protein family HMM PF02954 YP_002898212.1 involved in de novo purine biosynthesis YP_002898213.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898214.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_002898215.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002898216.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002898218.1 identified by match to protein family HMM PF08857 YP_002898219.1 identified by match to protein family HMM PF00300 YP_002898220.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_002898221.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002898222.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_002898223.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_002898224.1 identified by match to protein family HMM PF02798 YP_002898225.1 identified by match to protein family HMM PF00165 YP_002898226.1 identified by match to protein family HMM PF01610 YP_002898227.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_002898228.1 forms a direct contact with the tRNA during translation YP_002898229.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002898231.1 identified by match to protein family HMM PF02566 YP_002898233.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002898235.1 identified by match to protein family HMM PF00310 YP_002898238.1 identified by match to protein family HMM PF00011 YP_002898239.1 identified by match to protein family HMM PF00011 YP_002898240.1 identified by glimmer; putative YP_002898241.1 identified by match to protein family HMM PF00166 YP_002898242.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_002898245.1 identified by match to protein family HMM PF01610 YP_002898246.1 identified by match to protein family HMM PF00005 YP_002898247.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002898248.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002898249.1 identified by match to protein family HMM PF00497 YP_002898250.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812 YP_002898252.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002898253.1 identified by glimmer; putative YP_002898254.1 identified by match to protein family HMM PF07690 YP_002898255.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002898256.1 identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313 YP_002898257.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_002898259.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_002898260.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_002898262.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002898263.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898264.1 identified by match to protein family HMM PF03653 YP_002898265.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002898266.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_002898267.1 identified by match to protein family HMM PF04390 YP_002898268.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002898269.1 identified by match to protein family HMM PF02472 YP_002898270.1 identified by match to protein family HMM PF01618 YP_002898271.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002898272.1 identified by match to protein family HMM PF04355 YP_002898273.1 identified by match to protein family HMM PF01475 YP_002898274.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_002898275.1 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_002898276.1 involved in the transport of C4-dicarboxylates across the membrane YP_002898277.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002898279.1 controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source YP_002898280.1 identified by match to protein family HMM PF00484 YP_002898281.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide YP_002898282.1 identified by match to protein family HMM PF07690 YP_002898283.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898284.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002898285.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002898287.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_002898288.1 identified by match to protein family HMM PF00903 YP_002898289.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002898290.1 identified by glimmer; putative YP_002898291.1 identified by match to protein family HMM PF01337 YP_002898292.1 identified by match to protein family HMM PF00545 YP_002898293.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_002898294.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_002898295.1 identified by match to protein family HMM PF04608 YP_002898296.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_002898297.1 identified by glimmer; putative YP_002898298.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_002898299.1 identified by match to protein family HMM PF01263 YP_002898300.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659 YP_002898301.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_002898302.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_002898303.1 identified by match to protein family HMM PF00532; match to protein family HMM TIGR01409 YP_002898304.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002898305.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism YP_002898306.1 identified by match to protein family HMM PF05035 YP_002898307.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002898309.1 identified by glimmer; putative YP_002898310.1 identified by match to protein family HMM PF00450 YP_002898311.1 identified by glimmer; putative YP_002898312.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_002898313.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002898314.1 identified by match to protein family HMM PF00773 YP_002898315.1 identified by glimmer; putative YP_002898316.1 identified by match to protein family HMM PF05728 YP_002898317.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01081 YP_002898319.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002898320.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_002898321.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002898322.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002898323.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_002898324.1 identified by match to protein family HMM TIGR02098 YP_002898325.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002898326.1 identified by match to protein family HMM PF00294 YP_002898327.1 identified by match to protein family HMM PF05433 YP_002898330.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002898331.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002898333.1 identified by match to protein family HMM PF01510 YP_002898335.1 identified by match to protein family HMM PF01578 YP_002898336.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_002898337.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively YP_002898338.1 identified by glimmer; putative YP_002898339.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_002898340.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002898341.1 hydrolyzes diadenosine polyphosphate YP_002898342.1 identified by match to protein family HMM PF08750 YP_002898343.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898344.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002898345.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002898347.1 involved in the peptidyltransferase reaction during translation YP_002898348.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_002898349.1 identified by match to protein family HMM PF00348 YP_002898350.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002898351.1 identified by match to protein family HMM PF00437 YP_002898352.1 identified by match to protein family HMM PF00482 YP_002898353.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_002898354.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_002898355.1 identified by match to protein family HMM PF07072 YP_002898356.1 identified by match to protein family HMM PF03884 YP_002898357.1 identified by match to protein family HMM PF00293 YP_002898358.1 identified by match to protein family HMM PF05673 YP_002898359.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_002898360.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002898363.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_002898364.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002898365.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002898366.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_002898367.1 identified by match to protein family HMM PF03799; match to protein family HMM PF08478 YP_002898368.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002898369.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002898370.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002898371.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614 YP_002898372.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_002898373.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002898374.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_002898375.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_002898376.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002898377.1 identified by match to protein family HMM PF04999; match to protein family HMM TIGR02209 YP_002898378.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_002898379.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_002898381.1 identified by match to protein family HMM PF00267 YP_002898382.1 activates fatty acids by binding to coenzyme A YP_002898383.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_002898384.1 identified by glimmer; putative YP_002898387.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002898388.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02288 YP_002898389.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_002898390.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002898391.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; match to protein family HMM TIGR02286 YP_002898392.1 identified by match to protein family HMM TIGR02155 YP_002898393.1 identified by match to protein family HMM PF03562; match to protein family HMM PF06725 YP_002898394.1 protein associated with Co2+ and Mg2+ efflux YP_002898395.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_002898396.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_002898397.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_002898398.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_002898399.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002898400.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_002898401.1 identified by match to protein family HMM PF01928 YP_002898402.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_002898403.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002898404.1 identified by match to protein family HMM PF05299 YP_002898406.1 identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988 YP_002898412.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002898414.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_002898416.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773 YP_002898417.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898418.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898420.1 identified by match to protein family HMM PF03009; match to protein family HMM TIGR01409 YP_002898422.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_002898423.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002898424.1 identified by match to protein family HMM PF00857 YP_002898425.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898426.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002898427.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002898430.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_002898431.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002898432.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03534 YP_002898433.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365 YP_002898434.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate YP_002898435.1 identified by match to protein family HMM PF02900 YP_002898436.1 identified by match to protein family HMM PF00324 YP_002898438.1 identified by match to protein family HMM PF00313 YP_002898440.1 identified by match to protein family HMM PF00881 YP_002898442.1 identified by match to protein family HMM PF07690 YP_002898443.1 identified by match to protein family HMM PF00440 YP_002898444.1 identified by match to protein family HMM PF07209 YP_002898446.1 identified by match to protein family HMM PF05175 YP_002898448.1 identified by match to protein family HMM PF01757 YP_002898449.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898452.1 identified by match to protein family HMM PF01433 YP_002898453.1 identified by glimmer; putative YP_002898455.1 identified by glimmer; putative YP_002898459.1 identified by match to protein family HMM PF00529 YP_002898460.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412 YP_002898461.1 identified by match to protein family HMM PF02321 YP_002898464.1 identified by match to protein family HMM PF02557 YP_002898467.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761; match to protein family HMM TIGR03348 YP_002898468.1 identified by match to protein family HMM TIGR03373 YP_002898469.1 identified by match to protein family HMM PF00691 YP_002898470.1 identified by match to protein family HMM PF06812; match to protein family HMM TIGR03363 YP_002898471.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03345 YP_002898472.1 identified by match to protein family HMM PF06996; match to protein family HMM TIGR03347 YP_002898473.1 identified by match to protein family HMM PF05947; match to protein family HMM TIGR03359 YP_002898474.1 identified by match to protein family HMM PF04965; match to protein family HMM TIGR03357 YP_002898475.1 identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344 YP_002898476.1 identified by match to protein family HMM PF05943; match to protein family HMM TIGR03355 YP_002898477.1 identified by match to protein family HMM PF05591; match to protein family HMM TIGR03358 YP_002898478.1 identified by match to protein family HMM PF07719 YP_002898479.1 identified by glimmer; putative YP_002898480.1 identified by match to protein family HMM TIGR03352 YP_002898481.1 identified by match to protein family HMM PF05936; match to protein family HMM TIGR03353 YP_002898482.1 identified by match to protein family HMM TIGR03349 YP_002898484.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898485.1 identified by match to protein family HMM PF09684; match to protein family HMM TIGR01634 YP_002898487.1 identified by glimmer; putative YP_002898488.1 identified by glimmer; putative YP_002898489.1 identified by glimmer; putative YP_002898490.1 identified by glimmer; putative YP_002898491.1 identified by match to protein family HMM PF05973; match to protein family HMM TIGR02683 YP_002898492.1 identified by match to protein family HMM TIGR02684 YP_002898493.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540 YP_002898496.1 identified by match to protein family HMM PF04386 YP_002898497.1 identified by match to protein family HMM PF02798 YP_002898498.1 identified by match to protein family HMM PF02167 YP_002898499.1 identified by match to protein family HMM PF00033 YP_002898500.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416 YP_002898502.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_002898503.1 identified by glimmer; putative YP_002898504.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_002898505.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410 YP_002898506.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_002898507.1 identified by match to protein family HMM PF01230 YP_002898509.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_002898510.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_002898511.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002898512.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_002898513.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_002898514.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_002898515.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_002898516.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002898517.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002898518.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_002898519.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002898520.1 identified by match to protein family HMM PF01722 YP_002898521.1 identified by match to protein family HMM PF01061 YP_002898522.1 identified by match to protein family HMM PF00005 YP_002898524.1 identified by match to protein family HMM PF05494 YP_002898525.1 identified by match to protein family HMM PF04333 YP_002898526.1 identified by match to protein family HMM PF02470 YP_002898527.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_002898528.1 identified by match to protein family HMM PF00005 YP_002898529.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_002898530.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_002898531.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate YP_002898532.1 identified by match to protein family HMM PF01266 YP_002898534.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898535.1 identified by match to protein family HMM PF00005; match to protein family HMM PF05992; match to protein family HMM PF06472 YP_002898537.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_002898538.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002898539.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_002898540.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898 YP_002898541.1 identified by match to protein family HMM PF07605 YP_002898542.1 identified by match to protein family HMM PF03922 YP_002898543.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate YP_002898544.1 part of the UgpABCE glycerol-3-phosphate uptake system YP_002898545.1 with UgpABC is involved in uptake of glycerol-3-phosphate YP_002898546.1 identified by match to protein family HMM PF00528 YP_002898547.1 with UgpACE is involved in the uptake of glycerol-3-phosphate YP_002898548.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_002898549.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_002898550.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_002898551.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515 YP_002898553.1 identified by match to protein family HMM PF05137 YP_002898555.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002898556.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly YP_002898558.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_002898560.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_002898561.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_002898562.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144 YP_002898563.1 identified by match to protein family HMM PF05140 YP_002898564.1 identified by match to protein family HMM PF00034 YP_002898565.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002898566.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_002898567.1 identified by match to protein family HMM PF00085; match to protein family HMM PF02683 YP_002898568.1 identified by match to protein family HMM PF03091 YP_002898569.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002898570.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002898571.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002898572.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002898573.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002898574.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_002898575.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002898576.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002898577.1 late assembly protein YP_002898578.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002898579.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002898580.1 binds 5S rRNA along with protein L5 and L25 YP_002898581.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002898582.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002898583.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_002898584.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002898585.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002898586.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002898587.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002898588.1 one of the stabilizing components for the large ribosomal subunit YP_002898589.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002898590.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002898591.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002898592.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002898593.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002898594.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002898595.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002898596.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002898597.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002898598.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002898599.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002898600.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002898601.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002898602.1 identified by glimmer; putative YP_002898603.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_002898605.1 identified by match to protein family HMM PF01610 YP_002898606.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002898607.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002898608.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002898609.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002898610.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002898611.1 binds directly to 23S ribosomal RNA YP_002898612.1 Modulates Rho-dependent transcription termination YP_002898613.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002898614.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002898618.1 identified by match to protein family HMM PF00657 YP_002898619.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA YP_002898620.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation YP_002898621.1 identified by match to protein family HMM PF05138; match to protein family HMM TIGR02158 YP_002898622.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01883; match to protein family HMM TIGR02159 YP_002898623.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160 YP_002898624.1 identified by match to protein family HMM PF08874 YP_002898625.1 identified by match to protein family HMM PF00440 YP_002898626.1 identified by match to protein family HMM PF00583 YP_002898627.1 identified by match to protein family HMM PF01037 YP_002898630.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_002898631.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898632.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_002898634.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002898635.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_002898637.1 identified by match to protein family HMM PF00258 YP_002898638.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_002898642.1 identified by match to protein family HMM PF03922 YP_002898643.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002898644.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898645.1 identified by match to protein family HMM PF01810 YP_002898646.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807 YP_002898647.1 identified by match to protein family HMM PF01927 YP_002898649.1 identified by glimmer; putative YP_002898657.1 identified by match to protein family HMM PF00324 YP_002898658.1 identified by match to protein family HMM PF00034 YP_002898659.1 identified by match to protein family HMM PF04972 YP_002898661.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_002898662.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_002898663.1 identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413 YP_002898664.1 identified by match to protein family HMM PF00753 YP_002898666.1 identified by match to protein family HMM PF01037 YP_002898667.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002898669.1 identified by match to protein family HMM PF00816 YP_002898670.1 identified by glimmer; putative YP_002898671.1 identified by match to protein family HMM PF01243 YP_002898672.1 identified by match to protein family HMM PF07690 YP_002898673.1 identified by match to protein family HMM PF01094 YP_002898674.1 identified by match to protein family HMM PF03060 YP_002898676.1 identified by match to protein family HMM PF01738 YP_002898677.1 identified by match to protein family HMM PF01425 YP_002898678.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_002898679.1 identified by match to protein family HMM PF04020 YP_002898680.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_002898682.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes YP_002898684.1 positive regulator of class III flagellar genes YP_002898685.1 membrane protein involved in the flagellar export apparatus YP_002898686.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_002898687.1 identified by match to protein family HMM PF06983 YP_002898690.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation YP_002898691.1 identified by match to protein family HMM PF00072 YP_002898692.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_002898693.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_002898694.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_002898695.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002898696.1 identified by match to protein family HMM PF01584 YP_002898697.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF09078 YP_002898698.1 identified by match to protein family HMM PF00072 YP_002898699.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_002898700.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_002898701.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems YP_002898702.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems YP_002898703.1 identified by match to protein family HMM PF00534 YP_002898706.1 identified by glimmer; putative YP_002898707.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure YP_002898708.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002898709.1 identified by match to protein family HMM PF01869 YP_002898710.1 identified by match to protein family HMM PF03352 YP_002898711.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898712.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002898713.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus YP_002898714.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196 YP_002898716.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002898717.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_002898718.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545 YP_002898720.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545 YP_002898721.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002898722.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR03570 YP_002898723.1 identified by match to protein family HMM PF00355 YP_002898725.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898727.1 identified by match to protein family HMM PF01810 YP_002898728.1 identified by match to protein family HMM PF04185; match to protein family HMM TIGR01409; match to protein family HMM TIGR03397 YP_002898730.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898731.1 identified by match to protein family HMM PF05643 YP_002898733.1 identified by match to protein family HMM PF03783 YP_002898734.1 identified by glimmer; putative YP_002898736.1 identified by glimmer; putative YP_002898737.1 identified by match to protein family HMM PF00561 YP_002898738.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002898740.1 identified by match to protein family HMM PF01565; match to protein family HMM PF08031 YP_002898741.1 identified by match to protein family HMM PF03067 YP_002898743.1 identified by match to protein family HMM PF00034 YP_002898744.1 identified by match to protein family HMM PF00580 YP_002898746.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898747.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002898748.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002898751.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_002898752.1 identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527 YP_002898753.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_002898756.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_002898758.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_002898760.1 identified by match to protein family HMM PF00165 YP_002898761.1 identified by match to protein family HMM PF00171 YP_002898762.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898763.1 catalyzes the formation of acetaldehyde from ethanolamine YP_002898764.1 identified by match to protein family HMM PF06751 YP_002898765.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00908 YP_002898767.1 identified by match to protein family HMM PF01757 YP_002898769.1 identified by match to protein family HMM PF05552 YP_002898772.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_002898773.1 identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02047 YP_002898774.1 identified by match to protein family HMM PF03551 YP_002898775.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02913 YP_002898776.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898777.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898778.1 identified by match to protein family HMM PF00497 YP_002898779.1 catalyzes the transfer of an amino moiety YP_002898780.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898781.1 identified by match to protein family HMM PF00440 YP_002898782.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_002898783.1 identified by match to protein family HMM PF00501 YP_002898784.1 identified by match to protein family HMM PF01094 YP_002898785.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein YP_002898788.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002898790.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_002898791.1 identified by match to protein family HMM PF00497 YP_002898792.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898794.1 identified by match to protein family HMM PF00501 YP_002898795.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_002898796.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002898797.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002898798.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002898799.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_002898800.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_002898801.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_002898802.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002898806.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_002898807.1 identified by match to protein family HMM PF01656 YP_002898808.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002898809.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002898810.1 identified by match to protein family HMM PF00005 YP_002898811.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02653 YP_002898812.1 identified by match to protein family HMM PF02653 YP_002898813.1 identified by match to protein family HMM PF01094 YP_002898814.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898815.1 identified by glimmer; putative YP_002898816.1 identified by glimmer; putative YP_002898817.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898818.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898819.1 identified by match to protein family HMM PF02653 YP_002898822.1 identified by match to protein family HMM PF00005 YP_002898823.1 identified by match to protein family HMM PF00005 YP_002898825.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_002898827.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_002898829.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002898830.1 identified by match to protein family HMM PF01928 YP_002898831.1 identified by match to protein family HMM PF01037 YP_002898832.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_002898833.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_002898835.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002898836.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521 YP_002898837.1 identified by match to protein family HMM PF00856 YP_002898838.1 identified by match to protein family HMM PF00724 YP_002898839.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_002898840.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047 YP_002898842.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity YP_002898843.1 identified by match to protein family HMM PF00999 YP_002898844.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules YP_002898845.1 identified by glimmer; putative YP_002898846.1 identified by match to protein family HMM PF00216 YP_002898847.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_002898848.1 identified by match to protein family HMM PF01464 YP_002898849.1 identified by glimmer; putative YP_002898850.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 YP_002898851.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533 YP_002898852.1 identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120 YP_002898855.1 identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532 YP_002898856.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532 YP_002898857.1 identified by match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532 YP_002898858.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002898859.1 identified by match to protein family HMM PF03934 YP_002898860.1 identified by match to protein family HMM PF05134; match to protein family HMM TIGR01709 YP_002898861.1 identified by match to protein family HMM PF04612 YP_002898865.1 identified by match to protein family HMM PF01047 YP_002898866.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002898867.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002898868.1 identified by match to protein family HMM PF03788 YP_002898869.1 identified by match to protein family HMM PF04172 YP_002898870.1 identified by glimmer; putative YP_002898871.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898872.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_002898873.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_002898874.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480 YP_002898875.1 identified by match to protein family HMM PF04347; match to protein family HMM TIGR03500 YP_002898876.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_002898877.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus YP_002898878.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01400 YP_002898879.1 identified by match to protein family HMM PF00376; match to protein family HMM PF09278 YP_002898880.1 identified by match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002898881.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898882.1 identified by match to protein family HMM PF09084 YP_002898883.1 identified by match to protein family HMM PF00005 YP_002898884.1 identified by match to protein family HMM PF00528 YP_002898885.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08521 YP_002898886.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002898888.1 identified by glimmer; putative YP_002898889.1 identified by match to protein family HMM PF01555 YP_002898890.1 identified by match to protein family HMM PF04851 YP_002898893.1 identified by match to protein family HMM PF00165 YP_002898894.1 identified by match to protein family HMM PF00005 YP_002898896.1 identified by match to protein family HMM PF00005 YP_002898897.1 identified by match to protein family HMM PF02653 YP_002898898.1 identified by match to protein family HMM PF02653 YP_002898900.1 identified by match to protein family HMM PF00171 YP_002898903.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002898904.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_002898905.1 identified by match to protein family HMM PF03551 YP_002898909.1 identified by match to protein family HMM PF00487 YP_002898910.1 identified by match to protein family HMM PF07848; match to protein family HMM PF08223 YP_002898911.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00165 YP_002898912.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002898913.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898914.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002898915.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_002898916.1 identified by match to protein family HMM PF02515 YP_002898919.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002898922.1 identified by glimmer; putative YP_002898925.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002898926.1 identified by glimmer; putative YP_002898927.1 identified by match to protein family HMM PF00199 YP_002898928.1 identified by match to protein family HMM PF01292 YP_002898929.1 negatively supercoils closed circular double-stranded DNA YP_002898930.1 binds the polymerase to DNA and acts as a sliding clamp YP_002898931.1 identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362