-- dump date   	20140619_015554
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_438204.1	identified by match to protein family HMM PF00589
YP_438206.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_438207.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_438208.1	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism
YP_438210.1	identified by match to protein family HMM PF00583
YP_438211.1	identified by match to protein family HMM PF04264
YP_438212.1	identified by match to protein family HMM PF00440
YP_438213.1	identified by match to protein family HMM PF07080
YP_438214.1	identified by match to protein family HMM PF04952
YP_438215.1	identified by match to protein family HMM PF00180; match to protein family HMM TIGR02089
YP_438216.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438217.1	identified by match to protein family HMM PF04140
YP_438218.1	identified by match to protein family HMM PF02798
YP_438220.1	identified by match to protein family HMM PF01734
YP_438221.1	catalyzes the formation of acetoacetate from 3-hydroxybutyrate
YP_438222.2	converts acetoacetate to acetone and carbon dioxide
YP_438223.1	identified by match to protein family HMM PF01569
YP_438225.1	identified by match to protein family HMM PF04954; match to protein family HMM PF08021
YP_438226.1	identified by match to protein family HMM PF03551
YP_438228.1	identified by match to protein family HMM PF00067
YP_438232.1	identified by match to protein family HMM PF02310; match to protein family HMM PF04055
YP_438235.1	identified by match to protein family HMM PF01810
YP_438236.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_438237.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_438238.1	identified by match to protein family HMM PF00582
YP_438240.1	identified by match to protein family HMM PF00171
YP_438243.1	identified by match to protein family HMM PF00132
YP_438244.1	identified by match to protein family HMM PF00106
YP_438245.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_438246.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438247.1	catalyzes the formation of protocatechuate from 4-hydroxybenzoate
YP_438248.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_438249.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_438250.1	Catalyzes the cycloisomerization of cis,cis-muconate
YP_438251.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR02427
YP_438252.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425
YP_438253.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00895
YP_438255.1	identified by match to protein family HMM PF01810
YP_438256.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_438257.1	identified by match to protein family HMM PF07992
YP_438258.1	identified by match to protein family HMM PF02321
YP_438260.1	identified by match to protein family HMM PF00873
YP_438261.1	identified by match to protein family HMM TIGR01730
YP_438262.1	identified by match to protein family HMM PF01022
YP_438264.1	identified by match to protein family HMM PF00005
YP_438265.1	identified by match to protein family HMM PF02687
YP_438266.1	identified by match to protein family HMM TIGR01730
YP_438269.1	identified by match to protein family HMM PF01292
YP_438270.1	identified by match to protein family HMM PF02627
YP_438271.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_438273.1	identified by match to protein family HMM PF05594; match to protein family HMM TIGR01731
YP_438275.1	identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937
YP_438277.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630
YP_438280.1	identified by match to protein family HMM PF04185; match to protein family HMM PF05506; match to protein family HMM TIGR01409
YP_438281.1	identified by match to protein family HMM PF01527; match to protein family HMM TIGR01199
YP_438285.1	identified by match to protein family HMM PF00583
YP_438286.1	identified by match to protein family HMM PF00528
YP_438287.1	identified by match to protein family HMM PF00528
YP_438288.1	identified by match to protein family HMM PF01547
YP_438289.1	identified by match to protein family HMM PF01609
YP_438290.1	identified by match to protein family HMM PF00816
YP_438291.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_438294.1	identified by match to protein family HMM PF05488
YP_438297.1	identified by match to protein family HMM PF01527
YP_438298.1	identified by match to protein family HMM PF00665
YP_438300.1	identified by match to protein family HMM PF05488
YP_438301.1	identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149
YP_438305.1	identified by match to protein family HMM PF00267
YP_438306.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438309.2	controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source
YP_438310.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_438311.1	identified by match to protein family HMM PF00529
YP_438312.1	identified by match to protein family HMM PF04632
YP_438314.1	identified by match to protein family HMM PF05658; match to protein family HMM PF05662
YP_438317.1	identified by match to protein family HMM PF00419
YP_438318.1	identified by match to protein family HMM PF00345; match to protein family HMM PF02753
YP_438319.1	identified by match to protein family HMM PF00577
YP_438320.1	identified by match to protein family HMM PF00419
YP_438322.1	identified by match to protein family HMM PF00691
YP_438323.1	identified by match to protein family HMM PF05591
YP_438324.1	identified by match to protein family HMM PF05943
YP_438325.1	identified by match to protein family HMM PF05638
YP_438327.1	identified by match to protein family HMM PF05936
YP_438328.1	identified by match to protein family HMM PF00691
YP_438329.1	identified by match to protein family HMM PF06744; match to protein family HMM PF06761
YP_438331.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_438332.1	identified by match to protein family HMM PF05488
YP_438333.1	identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_438335.1	identified by match to protein family HMM PF00419
YP_438336.1	identified by match to protein family HMM PF06812
YP_438337.1	identified by match to protein family HMM PF06996
YP_438338.1	identified by match to protein family HMM PF05947
YP_438339.1	identified by match to protein family HMM PF07025
YP_438340.1	identified by match to protein family HMM PF07024
YP_438342.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724
YP_438343.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_438344.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_438345.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_438346.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518
YP_438347.1	identified by match to protein family HMM PF00535
YP_438350.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488
YP_438353.1	identified by match to protein family HMM PF00669; match to protein family HMM PF00700
YP_438355.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_438356.1	identified by match to protein family HMM PF00691
YP_438357.1	identified by match to protein family HMM PF00072
YP_438358.1	identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895
YP_438359.1	identified by match to protein family HMM PF01584
YP_438360.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_438361.1	identified by match to protein family HMM PF01739; match to protein family HMM PF03705
YP_438362.1	identified by match to protein family HMM PF03975
YP_438363.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01339
YP_438364.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01339
YP_438365.1	identified by match to protein family HMM PF00771; match to protein family HMM TIGR01398
YP_438366.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_438367.1	identified by match to protein family HMM PF01311
YP_438368.1	identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402
YP_438369.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_438370.1	identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480
YP_438372.1	identified by match to protein family HMM PF02049
YP_438373.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella
YP_438374.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_438375.1	binds to and inhibits the function of flagella specific ATPase FliI
YP_438376.1	involved in type III protein export during flagellum assembly
YP_438378.1	identified by match to protein family HMM PF02465; match to protein family HMM PF07195
YP_438379.1	identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208
YP_438381.1	identified by match to protein family HMM PF02120
YP_438382.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02479
YP_438384.1	identified by match to protein family HMM PF01832
YP_438385.1	identified by match to protein family HMM PF03240
YP_438386.1	identified by match to protein family HMM PF00460; match to protein family HMM TIGR01396
YP_438387.1	identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR01395
YP_438388.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production
YP_438389.1	identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559
YP_438390.1	identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02490
YP_438391.1	makes up the distal portion of the flagellar basal body rod
YP_438392.1	part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod
YP_438393.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_438395.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_438396.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; in Vibrio parahaemolyticus the protein in this cluster is associated with the lateral flagella
YP_438399.1	identified by match to protein family HMM PF00486
YP_438400.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_438401.1	identified by match to protein family HMM PF00816
YP_438402.1	identified by match to protein family HMM PF07690
YP_438403.1	identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_438404.1	identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064
YP_438405.1	identified by match to protein family HMM PF05651; match to protein family HMM TIGR01199
YP_438406.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00975
YP_438407.1	identified by match to protein family HMM PF07993
YP_438408.1	identified by match to protein family HMM PF07858
YP_438409.1	identified by match to protein family HMM PF00891; similar to blr7665
YP_438410.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_438411.1	identified by match to protein family HMM PF00532
YP_438412.1	identified by match to protein family HMM PF02653
YP_438413.1	identified by match to protein family HMM PF00005
YP_438414.1	identified by match to protein family HMM PF00480
YP_438415.1	identified by match to protein family HMM PF00686; match to protein family HMM PF00723
YP_438416.2	exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA
YP_438417.1	identified by match to protein family HMM PF00267
YP_438418.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_438419.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_438420.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438422.1	identified by match to protein family HMM PF00487
YP_438424.1	identified by match to protein family HMM PF00497
YP_438426.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438427.1	identified by match to protein family HMM PF00106
YP_438428.1	similar to bll3988
YP_438430.1	identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180
YP_438431.1	identified by match to protein family HMM PF05141
YP_438433.1	identified by match to protein family HMM PF03241
YP_438434.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_438435.1	identified by match to protein family HMM PF00107
YP_438437.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438439.1	identified by match to protein family HMM PF00676
YP_438440.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_438441.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_438442.1	identified by match to protein family HMM PF01070
YP_438443.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_438444.1	identified by match to protein family HMM PF00857
YP_438445.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438446.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438447.1	catalyzes the formation of pyruvate from serine
YP_438448.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438449.1	identified by match to protein family HMM PF00106
YP_438451.1	identified by match to protein family HMM PF00498
YP_438454.1	identified by match to protein family HMM PF05936
YP_438455.1	identified by match to protein family HMM PF00691
YP_438456.1	identified by match to protein family HMM PF06744; match to protein family HMM PF06761
YP_438458.1	identified by match to protein family HMM PF00069
YP_438459.1	identified by match to protein family HMM PF06812
YP_438460.1	identified by match to protein family HMM PF05591
YP_438461.1	identified by match to protein family HMM PF05943
YP_438462.1	identified by match to protein family HMM PF05638
YP_438463.1	identified by match to protein family HMM PF07025
YP_438464.1	identified by match to protein family HMM PF05947
YP_438465.1	identified by match to protein family HMM PF06996
YP_438466.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07724
YP_438467.1	identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646
YP_438469.1	identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_438473.1	identified by match to protein family HMM PF00872
YP_438474.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_438475.1	identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052
YP_438477.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_438478.1	identified by match to protein family HMM PF00501
YP_438479.1	identified by match to protein family HMM PF04909
YP_438480.1	identified by match to protein family HMM PF00487
YP_438481.1	identified by match to protein family HMM PF02353
YP_438482.1	identified by match to protein family HMM PF00550
YP_438483.1	identified by match to protein family HMM PF00487
YP_438484.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_438485.1	identified by match to protein family HMM PF00857
YP_438486.1	identified by match to protein family HMM PF00501
YP_438487.1	identified by match to protein family HMM PF05853
YP_438488.1	identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_438489.1	identified by match to protein family HMM PF00378
YP_438490.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_438491.1	identified by match to protein family HMM PF01039
YP_438492.1	identified by match to protein family HMM PF00106
YP_438493.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_438494.1	identified by match to protein family HMM PF00440
YP_438495.1	identified by match to protein family HMM PF00165
YP_438496.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_438497.1	identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237
YP_438500.1	identified by match to protein family HMM PF04055
YP_438501.1	identified by match to protein family HMM PF00578
YP_438503.1	identified by match to protein family HMM PF01980
YP_438505.1	identified by match to protein family HMM PF02597
YP_438506.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_438508.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782
YP_438510.1	identified by match to protein family HMM PF00282
YP_438512.1	identified by match to protein family HMM PF00282
YP_438513.1	identified by match to protein family HMM PF04828
YP_438515.1	identified by match to protein family HMM PF03741
YP_438516.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438517.1	identified by match to protein family HMM PF01613; match to protein family HMM TIGR02296
YP_438518.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_438519.1	identified by match to protein family HMM PF01565; match to protein family HMM PF08031
YP_438520.1	identified by match to protein family HMM PF00106
YP_438521.1	identified by match to protein family HMM PF01425
YP_438524.1	identified by match to protein family HMM PF08028
YP_438525.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_438526.1	identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013
YP_438527.1	identified by match to protein family HMM PF00866
YP_438528.1	identified by match to protein family HMM PF00355; match to protein family HMM PF00848
YP_438529.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438530.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_438531.1	identified by match to protein family HMM PF00171
YP_438532.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_438533.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_438534.1	identified by match to protein family HMM PF00267
YP_438535.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438536.1	identified by match to protein family HMM PF00165
YP_438538.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_438539.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_438540.1	identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236
YP_438542.1	identified by match to protein family HMM PF00535
YP_438548.1	identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135
YP_438549.1	identified by match to protein family HMM PF00106
YP_438550.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438552.1	identified by match to protein family HMM TIGR01313
YP_438553.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_438555.1	identified by match to protein family HMM PF01609
YP_438556.1	identified by match to protein family HMM PF01527
YP_438558.1	identified by match to protein family HMM PF00872
YP_438560.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_438561.1	identified by match to protein family HMM PF07883
YP_438562.1	identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384
YP_438564.1	identified by match to protein family HMM PF04343
YP_438565.1	identified by match to protein family HMM PF04214
YP_438566.1	identified by match to protein family HMM PF00665
YP_438567.1	identified by match to protein family HMM PF01527
YP_438573.1	identified by match to protein family HMM PF00905
YP_438575.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386
YP_438576.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387
YP_438579.1	identified by match to protein family HMM PF00082
YP_438580.1	catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue
YP_438581.1	identified by match to protein family HMM PF03167
YP_438582.1	identified by match to protein family HMM PF00596
YP_438585.1	identified by match to protein family HMM PF00149
YP_438589.1	identified by match to protein family HMM PF03265
YP_438590.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_438591.1	identified by match to protein family HMM PF02583
YP_438594.1	identified by match to protein family HMM PF02706
YP_438598.1	identified by match to protein family HMM PF01391
YP_438599.1	identified by match to protein family HMM PF00082
YP_438601.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_438602.1	identified by match to protein family HMM PF00561
YP_438604.1	identified by match to protein family HMM PF00106
YP_438606.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438607.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_438608.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF01243; match to protein family HMM PF08021
YP_438609.1	identified by match to protein family HMM PF07662; match to protein family HMM PF07670
YP_438610.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_438612.2	Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate
YP_438613.1	identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354
YP_438614.1	identified by match to protein family HMM PF04972
YP_438615.1	identified by match to protein family HMM PF00294
YP_438616.1	Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation
YP_438617.1	identified by match to protein family HMM PF01515; match to protein family HMM PF01575
YP_438618.1	identified by match to protein family HMM PF00561; match to protein family HMM PF07167
YP_438619.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit
YP_438620.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex
YP_438621.1	identified by match to protein family HMM TIGR02230
YP_438623.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0
YP_438624.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_438625.1	identified by match to protein family HMM PF00430
YP_438626.1	produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit
YP_438627.1	identified by match to protein family HMM PF00231
YP_438628.1	identified by match to protein family HMM PF00107
YP_438631.1	identified by match to protein family HMM PF00872
YP_438634.1	identified by match to protein family HMM PF00067
YP_438636.1	identified by match to protein family HMM PF01609
YP_438637.1	identified by match to protein family HMM PF01061
YP_438638.1	identified by match to protein family HMM PF00005; match to protein family HMM PF01061
YP_438639.1	identified by match to protein family HMM PF00529
YP_438640.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_438641.1	identified by match to protein family HMM PF00440
YP_438642.1	identified by match to protein family HMM PF00582
YP_438644.1	identified by match to protein family HMM PF02687
YP_438645.1	identified by match to protein family HMM PF00005
YP_438647.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_438648.1	identified by match to protein family HMM PF01522
YP_438649.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_438650.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_438652.1	identified by match to protein family HMM PF00685
YP_438653.1	identified by match to protein family HMM PF04972
YP_438654.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_438659.1	identified by match to protein family HMM PF00107
YP_438660.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_438661.1	identified by match to protein family HMM PF00106; match to protein family HMM TIGR01829
YP_438662.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521
YP_438664.1	identified by match to protein family HMM PF00324
YP_438665.1	identified by match to protein family HMM PF01610
YP_438667.1	identified by match to protein family HMM PF00857
YP_438668.1	identified by match to protein family HMM PF01047
YP_438669.1	identified by match to protein family HMM PF07859
YP_438670.1	catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol
YP_438671.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08021
YP_438672.1	identified by match to protein family HMM PF00866
YP_438673.1	identified by match to protein family HMM PF00355; match to protein family HMM PF00848
YP_438674.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438677.1	identified by match to protein family HMM PF00165
YP_438678.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992
YP_438679.1	identified by match to protein family HMM PF06481; match to protein family HMM TIGR01433
YP_438680.1	identified by match to protein family HMM PF00115
YP_438682.1	identified by match to protein family HMM PF03626
YP_438683.1	identified by match to protein family HMM PF02426
YP_438684.1	identified by match to protein family HMM PF00775; match to protein family HMM PF04444; match to protein family HMM TIGR02439
YP_438685.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR02534
YP_438686.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438687.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_438688.1	identified by match to protein family HMM PF00355; match to protein family HMM PF00848
YP_438689.1	identified by match to protein family HMM PF00866
YP_438690.1	identified by match to protein family HMM PF00355
YP_438691.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_438692.1	identified by match to protein family HMM PF01230
YP_438693.1	identified by match to protein family HMM PF00614
YP_438694.1	identified by match to protein family HMM PF00583
YP_438695.1	identified by match to protein family HMM PF04286
YP_438696.1	identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831
YP_438697.1	catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis
YP_438698.1	identified by match to protein family HMM PF00171
YP_438700.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_438701.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_438702.1	identified by match to protein family HMM PF01584
YP_438703.1	identified by match to protein family HMM PF00515; match to protein family HMM PF01739; match to protein family HMM PF07719
YP_438705.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01627; match to protein family HMM PF02518
YP_438706.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_438707.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493
YP_438708.1	identified by match to protein family HMM PF00654
YP_438709.1	identified by match to protein family HMM PF02517
YP_438712.2	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_438713.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_438714.1	identified by match to protein family HMM PF01965
YP_438715.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_438716.1	identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413
YP_438718.1	identified by match to protein family HMM PF02566
YP_438719.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438720.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_438721.1	identified by match to protein family HMM PF01636
YP_438723.1	identified by match to protein family HMM PF00106
YP_438724.1	identified by match to protein family HMM PF00106
YP_438725.1	identified by match to protein family HMM PF00107
YP_438726.1	identified by match to protein family HMM PF07690
YP_438727.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715
YP_438729.1	identified by match to protein family HMM PF01594
YP_438731.1	identified by match to protein family HMM PF05957
YP_438732.1	identified by match to protein family HMM PF03372
YP_438733.1	identified by match to protein family HMM PF04946
YP_438734.1	identified by match to protein family HMM PF04946
YP_438736.1	identified by match to protein family HMM PF04542
YP_438737.1	identified by match to protein family HMM PF01510
YP_438738.1	identified by match to protein family HMM PF02915
YP_438742.1	identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479
YP_438743.1	identified by match to protein family HMM PF02397
YP_438744.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721
YP_438745.1	identified by match to protein family HMM PF01451
YP_438746.1	identified by match to protein family HMM PF02563
YP_438747.1	identified by match to protein family HMM PF02706
YP_438748.1	identified by match to protein family HMM PF00535
YP_438751.1	identified by match to protein family HMM PF00534
YP_438752.1	identified by match to protein family HMM PF00534
YP_438753.1	identified by match to protein family HMM PF00165
YP_438754.1	identified by match to protein family HMM PF00254
YP_438758.1	identified by match to protein family HMM PF00149
YP_438761.1	identified by match to protein family HMM PF01022
YP_438762.1	identified by match to protein family HMM PF00501; match to protein family HMM TIGR01733
YP_438763.1	identified by match to protein family HMM PF00550
YP_438764.1	identified by match to protein family HMM PF05721; match to protein family HMM TIGR01762
YP_438765.1	identified by match to protein family HMM PF00975
YP_438767.1	identified by match to protein family HMM PF01063; match to protein family HMM TIGR01122
YP_438768.1	identified by match to protein family HMM PF00975
YP_438769.1	catalyzes the formation of acetyl-CoA from acetalaldehyde
YP_438770.1	catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate
YP_438771.1	identified by match to protein family HMM PF07883
YP_438773.1	identified by match to protein family HMM PF01609
YP_438776.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_438777.1	identified by match to protein family HMM PF01810
YP_438779.1	identified by match to protein family HMM PF01070
YP_438780.1	identified by match to protein family HMM PF04073
YP_438782.1	identified by match to protein family HMM PF02922
YP_438784.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_438785.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_438786.1	identified by match to protein family HMM PF00892
YP_438787.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438788.1	identified by match to protein family HMM PF01361
YP_438789.1	identified by match to protein family HMM PF05235
YP_438790.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03459; match to protein family HMM TIGR00637; match to protein family HMM TIGR00638
YP_438791.1	identified by match to protein family HMM PF00005
YP_438792.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141
YP_438793.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256
YP_438794.1	identified by match to protein family HMM PF01569
YP_438795.1	identified by match to protein family HMM TIGR01840
YP_438797.1	identified by match to protein family HMM PF02566
YP_438798.1	identified by match to protein family HMM PF01047
YP_438800.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine
YP_438802.1	Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile
YP_438804.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_438805.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_438806.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_438809.1	identified by match to protein family HMM PF01738; match to protein family HMM TIGR01409
YP_438810.1	identified by match to protein family HMM PF00581
YP_438811.1	identified by match to protein family HMM PF00355
YP_438812.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_438813.1	identified by match to protein family HMM PF00348
YP_438814.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_438815.1	similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis
YP_438816.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_438817.1	identified by match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275
YP_438818.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_438819.1	identified by match to protein family HMM PF02637
YP_438820.1	synthesizes RNA primers at the replication forks
YP_438821.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_438822.1	identified by match to protein family HMM PF00589
YP_438823.1	identified by match to protein family HMM PF00665
YP_438824.1	identified by match to protein family HMM PF00872
YP_438825.1	identified by match to protein family HMM PF01757
YP_438827.1	identified by match to protein family HMM PF01787; match to protein family HMM PF02133
YP_438828.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_438829.1	identified by match to protein family HMM PF06080
YP_438830.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_438832.1	identified by match to protein family HMM PF07883
YP_438833.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_438835.1	identified by match to protein family HMM PF01292
YP_438837.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01778
YP_438838.1	identified by match to protein family HMM PF00561
YP_438839.1	acts as a molecular chaperone to fold and export lipase A
YP_438840.1	identified by match to protein family HMM PF00392
YP_438841.1	identified by match to protein family HMM PF00005
YP_438842.1	identified by match to protein family HMM PF01547
YP_438843.1	identified by match to protein family HMM PF00528
YP_438844.1	identified by match to protein family HMM PF00528
YP_438845.1	identified by match to protein family HMM PF00082
YP_438848.1	identified by match to protein family HMM PF00264
YP_438852.1	identified by match to protein family HMM PF00034
YP_438853.1	catalyzes the conversion of citrate to isocitrate
YP_438854.1	functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C
YP_438857.1	catalyzes the oxidation of malate to oxaloacetate
YP_438858.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_438859.1	identified by match to protein family HMM PF01127
YP_438860.1	identified by match to protein family HMM PF01127
YP_438861.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_438862.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_438863.1	identified by match to protein family HMM PF03937
YP_438864.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_438865.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_438866.1	identified by match to protein family HMM PF00903
YP_438869.1	paralogs to the E1 component of pyruvate dehydrogenase subunit E1
YP_438870.1	identified by match to protein family HMM PF01037
YP_438871.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_438872.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_438873.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_438874.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_438876.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_438877.2	catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis
YP_438878.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_438879.1	identified by match to protein family HMM PF01555
YP_438880.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_438881.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_438882.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01499
YP_438883.1	identified by match to protein family HMM PF05036
YP_438884.1	identified by match to protein family HMM PF02674
YP_438885.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_438886.1	catalyzes the conversion of O-succinylhomoserine into homocysteine
YP_438887.1	identified by match to protein family HMM PF07883
YP_438888.1	identified by match to protein family HMM PF01370; match to protein family HMM PF07993
YP_438889.1	identified by match to protein family HMM TIGR01472
YP_438890.1	identified by match to protein family HMM PF01757
YP_438893.1	identified by match to protein family HMM PF01943
YP_438894.1	identified by match to protein family HMM PF00534
YP_438896.1	identified by match to protein family HMM PF01757
YP_438898.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_438899.1	identified by match to protein family HMM PF01757
YP_438900.1	identified by match to protein family HMM PF00216
YP_438901.1	identified by match to protein family HMM PF00267
YP_438902.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_438905.1	identified by match to protein family HMM PF02698
YP_438906.1	selenoprotein; identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553
YP_438907.1	identified by match to protein family HMM PF00037; match to protein family HMM TIGR01582
YP_438908.1	identified by match to protein family HMM TIGR01583
YP_438909.1	identified by match to protein family HMM PF04216; match to protein family HMM TIGR01562
YP_438910.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_438911.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00475
YP_438912.1	identified by match to protein family HMM PF01757
YP_438916.1	identified by match to protein family HMM PF01382
YP_438918.1	identified by match to protein family HMM PF01425
YP_438920.1	identified by match to protein family HMM PF00933; match to protein family HMM PF01915
YP_438921.1	identified by match to protein family HMM PF01614
YP_438922.1	identified by match to protein family HMM PF00067; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_438923.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_438924.1	identified by match to protein family HMM PF01734
YP_438927.1	identified by match to protein family HMM PF00652
YP_438928.1	identified by match to protein family HMM PF00072
YP_438930.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_438932.1	identified by match to protein family HMM PF07690
YP_438933.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438935.1	identified by match to protein family HMM PF01609
YP_438939.1	identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401
YP_438940.1	identified by match to protein family HMM TIGR02559
YP_438941.1	identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546
YP_438942.1	identified by match to protein family HMM TIGR02499
YP_438943.1	identified by match to protein family HMM TIGR02560
YP_438944.1	identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544
YP_438945.1	identified by match to protein family HMM TIGR02558
YP_438946.1	identified by match to protein family HMM TIGR02561
YP_438947.1	identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404
YP_438948.1	identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399
YP_438949.1	identified by match to protein family HMM TIGR02557
YP_438950.1	identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551
YP_438951.1	part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response
YP_438952.1	identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403
YP_438959.1	identified by match to protein family HMM PF00165
YP_438962.1	identified by match to protein family HMM PF02518
YP_438963.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_438965.1	identified by match to protein family HMM PF00437
YP_438966.1	identified by match to protein family HMM PF00263; match to protein family HMM TIGR02520
YP_438969.1	identified by match to protein family HMM PF00437
YP_438970.1	identified by match to protein family HMM PF00482
YP_438973.1	identified by match to protein family HMM TIGR02532
YP_438974.1	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516
YP_438981.1	identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230
YP_438982.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_438986.1	identified by match to protein family HMM PF01381
YP_438988.2	binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP)
YP_438989.1	catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans
YP_438990.1	identified by match to protein family HMM PF00515; match to protein family HMM PF05420; match to protein family HMM PF07719; match to protein family HMM PF07721
YP_438994.1	identified by match to protein family HMM PF00535
YP_438996.2	catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers
YP_438997.1	identified by match to protein family HMM PF04069; match to protein family HMM PF06642; match to protein family HMM TIGR01729
YP_438998.1	identified by match to protein family HMM PF00005
YP_438999.1	identified by match to protein family HMM PF00528
YP_439000.1	identified by match to protein family HMM PF00724
YP_439001.1	identified by match to protein family HMM PF00765
YP_439002.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472
YP_439004.1	identified by match to protein family HMM PF01384
YP_439006.1	identified by match to protein family HMM PF01037
YP_439007.1	identified by match to protein family HMM PF01810
YP_439008.1	identified by match to protein family HMM PF00082
YP_439010.1	identified by match to protein family HMM PF01070
YP_439011.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_439012.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_439013.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF07504
YP_439016.1	identified by match to protein family HMM PF00486
YP_439018.1	identified by match to protein family HMM TIGR02499
YP_439019.1	identified by match to protein family HMM TIGR02555
YP_439020.1	identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544
YP_439022.1	identified by match to protein family HMM TIGR02105
YP_439023.1	identified by match to protein family HMM TIGR02554
YP_439024.1	identified by match to protein family HMM PF00165
YP_439025.1	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516
YP_439026.1	identified by match to protein family HMM PF02523; match to protein family HMM TIGR02511; match to protein family HMM TIGR02568
YP_439027.1	identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399
YP_439029.1	Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase
YP_439032.1	identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551
YP_439033.1	part of a type III secretory system probably involved in invasion into eukaryotic cells
YP_439034.1	identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403
YP_439035.1	identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401
YP_439036.1	Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins
YP_439037.1	identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552
YP_439039.1	identified by match to protein family HMM TIGR02101
YP_439040.1	identified by match to protein family HMM PF00816
YP_439041.1	identified by match to protein family HMM TIGR02553
YP_439043.1	identified by match to protein family HMM PF00550
YP_439044.1	identified by match to protein family HMM PF01464
YP_439048.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_439050.1	identified by match to protein family HMM PF00165
YP_439054.1	identified by match to protein family HMM PF05936
YP_439058.1	identified by match to protein family HMM PF00805
YP_439059.1	identified by match to protein family HMM PF00805
YP_439060.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_439061.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724
YP_439062.1	identified by match to protein family HMM PF06996
YP_439063.1	identified by match to protein family HMM PF05947
YP_439064.1	identified by match to protein family HMM PF07025
YP_439065.1	identified by match to protein family HMM PF05638
YP_439066.1	identified by match to protein family HMM PF05943
YP_439067.1	identified by match to protein family HMM PF05591
YP_439068.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_439069.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_439070.1	identified by match to protein family HMM PF06812
YP_439072.1	identified by match to protein family HMM PF02205; match to protein family HMM PF05658; match to protein family HMM PF05662
YP_439074.1	identified by match to protein family HMM PF01510
YP_439075.1	identified by match to protein family HMM PF05658
YP_439076.1	identified by match to protein family HMM PF02630
YP_439077.1	identified by match to protein family HMM PF03781
YP_439078.1	identified by match to protein family HMM PF00034; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR02376
YP_439081.1	identified by match to protein family HMM PF06792
YP_439082.1	identified by match to protein family HMM PF00440
YP_439083.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_439084.1	identified by match to protein family HMM PF00892
YP_439086.1	identified by match to protein family HMM PF00455
YP_439088.1	identified by match to protein family HMM PF00440
YP_439090.1	identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552
YP_439091.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_439093.1	identified by match to protein family HMM PF00155
YP_439095.1	identified by match to protein family HMM PF00171
YP_439096.1	identified by match to protein family HMM PF02424
YP_439097.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00970; match to protein family HMM PF03929
YP_439100.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_439101.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_439102.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_439103.1	identified by match to protein family HMM PF00359; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417
YP_439104.1	identified by match to protein family HMM PF00294
YP_439105.1	identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427
YP_439106.1	identified by match to protein family HMM PF00583
YP_439107.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_439110.1	identified by match to protein family HMM PF01596
YP_439111.1	identified by match to protein family HMM PF00440
YP_439113.1	identified by match to protein family HMM PF00118; match to protein family HMM TIGR02348
YP_439115.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251
YP_439116.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_439117.1	identified by match to protein family HMM PF00571
YP_439119.1	identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518
YP_439121.1	identified by match to protein family HMM PF00011
YP_439122.1	identified by match to protein family HMM PF00144
YP_439124.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_439125.1	identified by match to protein family HMM PF00676
YP_439126.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_439127.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_439129.1	identified by match to protein family HMM PF00072
YP_439130.1	identified by match to protein family HMM PF04524
YP_439133.1	identified by match to protein family HMM PF01609
YP_439135.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02446; match to protein family HMM PF02922; match to protein family HMM TIGR00217; match to protein family HMM TIGR02100
YP_439136.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_439137.1	identified by match to protein family HMM TIGR02095
YP_439138.1	identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094
YP_439140.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553
YP_439141.1	identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732
YP_439143.1	identified by match to protein family HMM PF00440
YP_439144.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_439145.1	identified by match to protein family HMM PF01039
YP_439146.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_439147.1	identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_439152.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_439154.1	identified by match to protein family HMM PF05658; match to protein family HMM PF05662
YP_439155.1	identified by match to protein family HMM PF01758
YP_439156.1	identified by match to protein family HMM PF01451
YP_439157.1	identified by match to protein family HMM PF00903
YP_439158.1	identified by match to protein family HMM PF01022
YP_439162.1	identified by match to protein family HMM PF03358
YP_439163.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186
YP_439164.1	identified by match to protein family HMM PF00528
YP_439165.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_439166.1	identified by match to protein family HMM PF04069
YP_439168.1	identified by match to protein family HMM PF05118
YP_439169.1	identified by match to protein family HMM PF07993
YP_439171.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_439172.1	identified by match to protein family HMM PF00596
YP_439173.1	identified by match to protein family HMM PF07005
YP_439175.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_439176.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_439177.1	identified by match to protein family HMM PF00376; match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_439179.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_439180.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_439181.1	identified by match to protein family HMM PF04290; match to protein family HMM PF06808; match to protein family HMM TIGR00786
YP_439182.1	identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409
YP_439184.1	identified by match to protein family HMM PF00043
YP_439185.1	identified by match to protein family HMM PF01609
YP_439187.1	identified by match to protein family HMM PF04337
YP_439188.1	identified by match to protein family HMM PF00165
YP_439191.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_439192.1	identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720
YP_439193.1	identified by match to protein family HMM TIGR01373
YP_439194.1	identified by match to protein family HMM PF04267
YP_439195.1	identified by match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372
YP_439196.1	identified by match to protein family HMM PF04268
YP_439197.1	identified by match to protein family HMM TIGR00526
YP_439198.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_439199.1	identified by match to protein family HMM PF00313
YP_439203.1	identified by match to protein family HMM PF02566
YP_439204.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229
YP_439205.1	identified by match to protein family HMM PF00072
YP_439206.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229
YP_439207.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_439208.1	identified by match to protein family HMM PF00589
YP_439214.1	identified by match to protein family HMM PF01145
YP_439225.1	similar to methyltransferase
YP_439226.1	identified by match to protein family HMM PF01555
YP_439231.1	identified by match to protein family HMM PF06356
YP_439237.1	identified by match to protein family HMM PF04365
YP_439239.1	identified by match to protein family HMM PF01844
YP_439241.1	identified by match to protein family HMM PF03354
YP_439242.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537
YP_439243.1	identified by match to protein family HMM PF00574
YP_439244.1	identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554
YP_439247.1	identified by match to protein family HMM PF06264; match to protein family HMM TIGR01563
YP_439248.1	identified by match to protein family HMM PF07772; match to protein family HMM TIGR01725
YP_439251.1	identified by match to protein family HMM PF06222
YP_439253.1	identified by match to protein family HMM TIGR01541; match to protein family HMM TIGR02675
YP_439254.1	identified by match to protein family HMM PF05939
YP_439256.1	identified by match to protein family HMM PF05100; match to protein family HMM TIGR01600
YP_439257.1	identified by match to protein family HMM PF00877
YP_439258.1	identified by match to protein family HMM PF06805
YP_439259.1	identified by match to protein family HMM PF00041
YP_439265.1	identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571
YP_439268.1	identified by match to protein family HMM PF05853
YP_439269.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_439270.1	catalyzes the formation of betaine from betaine aldehyde
YP_439271.1	HTH-type; bet1; Repressor involved in choline regulation of the bet genes
YP_439273.1	identified by match to protein family HMM PF03033
YP_439274.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_439276.1	identified by match to protein family HMM TIGR01556
YP_439277.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_439278.1	identified by match to protein family HMM PF00529
YP_439279.1	identified by match to protein family HMM PF00872
YP_439280.1	identified by match to protein family HMM PF00326; match to protein family HMM PF02897
YP_439281.1	identified by match to protein family HMM PF01292
YP_439282.1	identified by match to protein family HMM PF01022
YP_439283.1	identified by match to protein family HMM PF04143
YP_439284.1	identified by match to protein family HMM PF04143
YP_439285.1	identified by match to protein family HMM PF00583
YP_439288.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_439289.1	identified by match to protein family HMM PF03150
YP_439290.1	identified by match to protein family HMM PF00149
YP_439291.1	identified by match to protein family HMM PF04909
YP_439292.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_439293.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_439294.1	identified by match to protein family HMM PF07690
YP_439295.1	identified by match to protein family HMM PF00702
YP_439296.1	identified by match to protein family HMM PF01936
YP_439297.1	identified by match to protein family HMM PF01037
YP_439298.1	catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate
YP_439303.1	identified by match to protein family HMM PF04185
YP_439305.1	identified by match to protein family HMM PF00144
YP_439306.1	identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842
YP_439307.1	identified by match to protein family HMM PF01380
YP_439308.1	identified by match to protein family HMM PF01112
YP_439309.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_439310.1	identified by match to protein family HMM PF00496
YP_439311.1	identified by match to protein family HMM PF00528
YP_439312.1	identified by match to protein family HMM PF00528
YP_439313.1	identified by match to protein family HMM PF03576
YP_439314.1	identified by match to protein family HMM PF04951
YP_439315.1	identified by match to protein family HMM PF00775; match to protein family HMM TIGR02423
YP_439316.1	identified by match to protein family HMM PF00775; match to protein family HMM TIGR02422
YP_439317.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR02424
YP_439319.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_439320.1	identified by match to protein family HMM PF01596
YP_439321.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive
YP_439323.1	identified by match to protein family HMM PF04946
YP_439324.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_439326.1	identified by match to protein family HMM PF00324
YP_439327.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_439331.1	identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066
YP_439332.1	identified by match to protein family HMM PF02321
YP_439335.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412
YP_439339.1	identified by match to protein family HMM PF03976
YP_439341.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_439342.1	identified by match to protein family HMM PF00892
YP_439343.1	identified by match to protein family HMM PF01205
YP_439345.1	identified by match to protein family HMM PF00691
YP_439346.1	identified by match to protein family HMM PF05650
YP_439351.1	identified by match to protein family HMM PF02515
YP_439352.1	identified by match to protein family HMM PF00106
YP_439353.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199
YP_439354.1	identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035
YP_439355.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_439356.1	identified by match to protein family HMM PF04069
YP_439357.1	identified by match to protein family HMM PF00107
YP_439358.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_439359.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_439360.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_439361.1	identified by match to protein family HMM PF00850
YP_439364.1	identified by match to protein family HMM PF00072; match to protein family HMM PF03861
YP_439365.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469
YP_439366.1	identified by match to protein family HMM PF07690
YP_439367.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374
YP_439368.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378
YP_439369.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00384; match to protein family HMM PF00667; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_439370.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312
YP_439371.1	identified by match to protein family HMM PF00165
YP_439372.1	identified by match to protein family HMM PF00005
YP_439373.1	identified by match to protein family HMM PF00107
YP_439374.1	identified by match to protein family HMM PF00528
YP_439375.1	identified by match to protein family HMM PF00528
YP_439376.1	identified by match to protein family HMM PF01547
YP_439378.1	identified by match to protein family HMM PF07690
YP_439379.1	identified by match to protein family HMM PF00455
YP_439380.1	identified by match to protein family HMM PF00597; match to protein family HMM PF01569
YP_439381.1	identified by match to protein family HMM PF00873
YP_439383.1	identified by match to protein family HMM PF02321
YP_439385.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_439386.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_439390.1	identified by match to protein family HMM PF02254
YP_439391.1	identified by match to protein family HMM PF00106
YP_439392.1	identified by match to protein family HMM PF00532
YP_439393.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_439394.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_439396.1	identified by match to protein family HMM PF00857
YP_439397.1	identified by match to protein family HMM PF03171
YP_439399.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783
YP_439400.1	catalyzes the conversion of carbamoyl phosphate and aspartate to form N-carbamoyl aspartate
YP_439401.1	identified by match to protein family HMM PF08085
YP_439402.1	identified by match to protein family HMM PF07883
YP_439403.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_439404.1	identified by match to protein family HMM PF00392
YP_439407.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00202; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM TIGR01733
YP_439409.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733
YP_439410.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_439413.1	identified by match to protein family HMM PF00296
YP_439414.1	identified by match to protein family HMM PF00501
YP_439415.1	identified by match to protein family HMM PF00550
YP_439416.1	identified by match to protein family HMM PF01614
YP_439417.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883
YP_439418.1	identified by match to protein family HMM PF00903
YP_439420.1	identified by match to protein family HMM PF05721; match to protein family HMM TIGR01762
YP_439421.1	identified by match to protein family HMM PF00550
YP_439422.1	identified by match to protein family HMM PF00501; match to protein family HMM TIGR01733
YP_439423.1	identified by match to protein family HMM PF00765
YP_439427.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472
YP_439428.1	identified by match to protein family HMM PF01432
YP_439429.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_439430.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801
YP_439431.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801
YP_439432.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_439433.1	identified by match to protein family HMM PF00109; match to protein family HMM PF02801
YP_439435.1	identified by match to protein family HMM PF00583
YP_439436.1	identified by match to protein family HMM PF00975
YP_439437.1	identified by match to protein family HMM PF07690
YP_439438.1	identified by match to protein family HMM PF02668
YP_439439.1	identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976
YP_439440.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_439441.1	identified by match to protein family HMM PF00072
YP_439443.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_439444.1	identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229
YP_439445.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580
YP_439446.1	identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660
YP_439447.1	identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684
YP_439448.1	identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351
YP_439449.1	identified by match to protein family HMM PF00639
YP_439450.1	identified by match to protein family HMM PF07690
YP_439454.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_439456.1	identified by match to protein family HMM PF06912
YP_439457.1	identified by match to protein family HMM PF00361
YP_439458.1	identified by match to protein family HMM PF00146
YP_439460.1	identified by match to protein family HMM PF00361
YP_439461.1	identified by match to protein family HMM PF00346
YP_439462.1	identified by match to protein family HMM PF01058
YP_439464.1	identified by match to protein family HMM PF00582
YP_439467.1	identified by match to protein family HMM PF02110
YP_439468.1	identified by match to protein family HMM PF03551
YP_439469.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992
YP_439471.1	identified by match to protein family HMM PF00196
YP_439474.1	identified by match to protein family HMM PF07690
YP_439475.1	identified by match to protein family HMM PF00903
YP_439476.1	identified by match to protein family HMM PF00891
YP_439477.1	identified by match to protein family HMM PF00383; match to protein family HMM TIGR00326
YP_439478.1	identified by match to protein family HMM PF03781
YP_439480.1	identified by match to protein family HMM PF00400
YP_439481.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_439482.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_439483.1	identified by match to protein family HMM PF00873
YP_439484.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_439487.1	identified by match to protein family HMM PF00529
YP_439488.1	identified by match to protein family HMM PF00005
YP_439489.1	identified by match to protein family HMM PF00005
YP_439490.1	identified by match to protein family HMM PF01061
YP_439491.1	identified by match to protein family HMM PF01061
YP_439494.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241
YP_439495.1	identified by match to protein family HMM PF01694
YP_439497.1	identified by match to protein family HMM PF00293
YP_439500.1	identified by match to protein family HMM PF01209
YP_439501.1	identified by match to protein family HMM TIGR00097
YP_439505.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_439507.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_439509.1	identified by match to protein family HMM PF01951
YP_439510.1	identified by match to protein family HMM PF01139
YP_439519.1	identified by match to protein family HMM PF04352
YP_439521.1	identified by match to protein family HMM PF05954
YP_439522.1	identified by match to protein family HMM PF06995
YP_439524.1	identified by match to protein family HMM PF06528
YP_439525.1	identified by match to protein family HMM PF06158
YP_439526.1	identified by match to protein family HMM PF04985; match to protein family HMM TIGR01611
YP_439527.1	identified by match to protein family HMM PF04984
YP_439529.1	identified by match to protein family HMM PF07484
YP_439530.1	identified by match to protein family HMM TIGR01634
YP_439531.1	identified by match to protein family HMM PF04865
YP_439532.1	identified by match to protein family HMM PF04965
YP_439533.1	identified by match to protein family HMM PF04717; match to protein family HMM TIGR01644
YP_439534.1	identified by match to protein family HMM PF01555
YP_439536.1	identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635
YP_439540.1	identified by match to protein family HMM PF05449
YP_439542.1	identified by match to protein family HMM PF05489
YP_439545.1	identified by match to protein family HMM PF05944
YP_439546.1	identified by match to protein family HMM PF05125; match to protein family HMM TIGR01551
YP_439547.1	identified by match to protein family HMM PF05929
YP_439548.1	identified by match to protein family HMM PF06056
YP_439549.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540
YP_439550.1	identified by match to protein family HMM PF04365
YP_439554.1	identified by match to protein family HMM PF05488
YP_439556.1	identified by match to protein family HMM PF01656
YP_439559.1	identified by match to protein family HMM PF05840
YP_439560.1	identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675
YP_439565.1	identified by match to protein family HMM PF04073
YP_439567.1	identified by match to protein family HMM PF04008
YP_439569.1	identified by match to protein family HMM PF02321
YP_439570.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_439571.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914
YP_439572.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387
YP_439573.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386
YP_439575.1	identified by match to protein family HMM PF08028
YP_439577.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783
YP_439578.1	identified by match to protein family HMM PF04773
YP_439579.1	identified by match to protein family HMM PF04542
YP_439580.1	identified by match to protein family HMM PF03640
YP_439581.1	identified by match to protein family HMM PF04264
YP_439583.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545
YP_439584.1	identified by match to protein family HMM PF00165
YP_439585.1	identified by match to protein family HMM PF01557
YP_439586.1	identified by match to protein family HMM PF02517
YP_439587.1	identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427
YP_439588.1	identified by match to protein family HMM TIGR02155
YP_439589.1	identified by match to protein family HMM PF01699
YP_439590.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_439591.1	identified by match to protein family HMM PF00571; match to protein family HMM PF04982
YP_439593.1	identified by match to protein family HMM PF00571; match to protein family HMM PF00654
YP_439595.1	identified by match to protein family HMM TIGR01444
YP_439596.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_439597.1	identified by match to protein family HMM PF02518; match to protein family HMM PF06580
YP_439602.1	identified by match to protein family HMM PF04828
YP_439603.1	identified by match to protein family HMM PF00275
YP_439604.1	identified by match to protein family HMM PF00005
YP_439605.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_439606.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_439608.1	identified by match to protein family HMM PF00267
YP_439609.1	identified by match to protein family HMM PF07681
YP_439610.1	identified by match to protein family HMM PF00034
YP_439612.1	identified by match to protein family HMM TIGR01409
YP_439613.1	identified by match to protein family HMM PF00082
YP_439614.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524
YP_439617.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_439618.1	identified by match to protein family HMM PF00384; match to protein family HMM TIGR01701
YP_439619.1	identified by match to protein family HMM PF05249
YP_439621.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_439622.1	identified by match to protein family HMM PF00190; match to protein family HMM PF07883
YP_439623.1	identified by match to protein family HMM PF00496
YP_439625.1	identified by match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601
YP_439630.1	identified by match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_439632.1	identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646
YP_439637.1	catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis
YP_439638.1	identified by match to protein family HMM PF00496
YP_439639.1	identified by match to protein family HMM PF00528
YP_439640.1	identified by match to protein family HMM PF00528
YP_439641.1	identified by match to protein family HMM PF00005
YP_439642.1	identified by match to protein family HMM PF00005
YP_439645.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_439646.1	identified by match to protein family HMM PF00144; match to protein family HMM PF00905
YP_439647.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_439649.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_439650.1	identified by match to protein family HMM PF00267
YP_439652.1	identified by match to protein family HMM PF00756
YP_439653.1	catalyzes the formation of L-proline from L-ornithine
YP_439654.1	identified by match to protein family HMM PF02627
YP_439655.1	identified by match to protein family HMM PF00561
YP_439656.1	identified by match to protein family HMM PF02254; match to protein family HMM PF07885
YP_439657.1	identified by match to protein family HMM PF07992
YP_439660.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_439661.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_439663.1	identified by match to protein family HMM PF00583
YP_439664.1	identified by match to protein family HMM PF00376
YP_439665.1	identified by match to protein family HMM TIGR01728
YP_439666.1	identified by match to protein family HMM PF07947
YP_439667.1	identified by match to protein family HMM PF00743
YP_439668.1	identified by match to protein family HMM PF00106
YP_439670.1	identified by match to protein family HMM PF00561
YP_439671.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_439672.1	identified by match to protein family HMM PF01425
YP_439673.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_439675.1	identified by match to protein family HMM PF06475
YP_439677.1	identified by match to protein family HMM PF00797
YP_439680.1	catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine
YP_439681.1	identified by match to protein family HMM PF01037
YP_439682.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_439684.1	identified by match to protein family HMM PF00691; match to protein family HMM PF04355
YP_439685.1	identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662
YP_439686.1	identified by match to protein family HMM PF00083; match to protein family HMM PF06779; match to protein family HMM PF07690
YP_439687.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_439688.1	identified by match to protein family HMM PF00903
YP_439689.1	identified by match to protein family HMM PF00171
YP_439690.1	catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis
YP_439691.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02776
YP_439692.1	identified by match to protein family HMM PF00106
YP_439693.1	identified by match to protein family HMM PF01614
YP_439694.1	identified by match to protein family HMM PF00561
YP_439695.1	identified by match to protein family HMM PF07883
YP_439696.1	member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria
YP_439697.1	identified by match to protein family HMM PF00355
YP_439699.1	identified by match to protein family HMM PF00355
YP_439700.1	identified by match to protein family HMM PF00267
YP_439701.1	identified by match to protein family HMM PF01614
YP_439702.1	identified by match to protein family HMM PF03171
YP_439703.1	identified by match to protein family HMM PF00881
YP_439704.1	identified by match to protein family HMM PF00149
YP_439705.1	identified by match to protein family HMM PF02308
YP_439706.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472
YP_439708.1	identified by match to protein family HMM PF00765
YP_439710.1	identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505
YP_439711.1	identified by match to protein family HMM PF00571
YP_439713.1	identified by match to protein family HMM PF01272
YP_439715.1	identified by match to protein family HMM PF01609
YP_439716.1	identified by match to protein family HMM PF00267
YP_439717.1	identified by match to protein family HMM TIGR01409
YP_439718.1	identified by match to protein family HMM PF01022
YP_439719.1	identified by match to protein family HMM PF00724
YP_439720.1	identified by match to protein family HMM PF00583
YP_439723.1	identified by match to protein family HMM PF00872
YP_439726.1	identified by match to protein family HMM PF04524
YP_439727.1	identified by match to protein family HMM PF00267
YP_439728.1	identified by match to protein family HMM PF00165
YP_439730.1	identified by match to protein family HMM PF00324
YP_439731.1	identified by match to protein family HMM PF00202
YP_439732.1	identified by match to protein family HMM PF00171
YP_439733.1	identified by match to protein family HMM PF00196
YP_439734.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_439736.1	identified by match to protein family HMM PF00248
YP_439738.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_439739.1	identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196
YP_439740.1	identified by match to protein family HMM PF01548; match to protein family HMM PF02371
YP_439741.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_439743.1	identified by match to protein family HMM PF01094
YP_439744.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_439745.1	identified by match to protein family HMM PF06733
YP_439749.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152
YP_439750.1	identified by match to protein family HMM PF01156
YP_439753.1	identified by match to protein family HMM PF00816
YP_439754.1	identified by match to protein family HMM PF01381
YP_439755.1	identified by match to protein family HMM PF00324
YP_439757.1	identified by match to protein family HMM PF00106
YP_439758.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_439759.1	identified by match to protein family HMM PF00597
YP_439760.1	identified by match to protein family HMM PF00107
YP_439761.1	identified by match to protein family HMM PF00582
YP_439762.1	identified by match to protein family HMM PF00582
YP_439763.1	identified by match to protein family HMM PF00582
YP_439764.1	identified by match to protein family HMM PF00582
YP_439765.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_439770.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_439771.1	associated with the biosynthesis repression of 4-hydroxy-2-alkylquinolines (HAQs) and HAQ-analogs, which act as extracellular signals that interact with quorum sensing
YP_439773.1	identified by match to protein family HMM PF01752
YP_439774.1	identified by match to protein family HMM PF00691
YP_439778.1	identified by match to protein family HMM PF01835
YP_439779.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073
YP_439781.1	identified by match to protein family HMM PF04509
YP_439782.1	identified by match to protein family HMM PF00072
YP_439783.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_439786.1	identified by match to protein family HMM PF03171
YP_439788.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_439789.1	identified by match to protein family HMM PF00324
YP_439790.1	identified by match to protein family HMM PF01037
YP_439792.1	identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065
YP_439793.1	identified by match to protein family HMM PF01094
YP_439794.1	identified by match to protein family HMM TIGR00369
YP_439795.1	identified by match to protein family HMM PF00440
YP_439797.1	identified by match to protein family HMM PF00106
YP_439798.1	identified by match to protein family HMM PF01557
YP_439799.1	identified by match to protein family HMM PF00106
YP_439800.1	identified by match to protein family HMM PF04909
YP_439802.1	identified by match to protein family HMM PF04292
YP_439803.1	identified by match to protein family HMM PF02653
YP_439804.1	identified by match to protein family HMM PF00005
YP_439805.1	identified by match to protein family HMM PF00532
YP_439806.1	identified by match to protein family HMM PF01614
YP_439807.1	identified by match to protein family HMM PF00376; match to protein family HMM TIGR01950
YP_439809.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_439810.1	identified by match to protein family HMM PF03595
YP_439811.1	catalyzes the oxidation of malate to oxaloacetate
YP_439812.1	identified by match to protein family HMM PF00115
YP_439813.1	identified by match to protein family HMM PF02433
YP_439814.1	identified by match to protein family HMM PF00034
YP_439815.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_439816.1	identified by match to protein family HMM PF00174; match to protein family HMM PF03404
YP_439818.1	identified by match to protein family HMM PF05899
YP_439819.1	identified by match to protein family HMM PF03758
YP_439820.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_439821.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_439822.1	identified by match to protein family HMM PF00532
YP_439823.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_439824.1	identified by match to protein family HMM PF00701
YP_439825.1	identified by match to protein family HMM PF00171
YP_439826.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_439827.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_439828.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_439830.1	identified by match to protein family HMM PF04185
YP_439831.1	identified by match to protein family HMM PF03150
YP_439833.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_439834.1	identified by match to protein family HMM PF07905; match to protein family HMM TIGR01199
YP_439835.1	identified by match to protein family HMM PF02133
YP_439837.1	identified by match to protein family HMM PF00267
YP_439840.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_439841.1	identified by match to protein family HMM PF04632
YP_439844.1	identified by match to protein family HMM PF03576
YP_439845.1	identified by match to protein family HMM PF00324
YP_439846.1	identified by match to protein family HMM PF00196
YP_439847.1	identified by match to protein family HMM PF03640
YP_439848.1	identified by match to protein family HMM PF01551
YP_439849.1	identified by match to protein family HMM PF00497
YP_439850.1	identified by match to protein family HMM PF01610
YP_439851.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_439852.1	catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate
YP_439853.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_439855.1	identified by match to protein family HMM PF07883
YP_439857.1	catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
YP_439858.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00561; match to protein family HMM PF02801
YP_439859.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801
YP_439860.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801
YP_439861.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801
YP_439862.1	involved in polyketide production
YP_439863.1	involved in polyketide synthesis
YP_439864.1	identified by match to protein family HMM PF01154
YP_439865.1	involved in polyketide production
YP_439866.1	Acyl carrier proteins are involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; this ACP may be involved in the biosynthesis of lipopeptide antibiotics
YP_439867.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM TIGR01733
YP_439868.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801
YP_439869.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_439870.1	identified by match to protein family HMM PF01648
YP_439872.1	identified by match to protein family HMM PF00149
YP_439873.1	identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513
YP_439875.1	identified by match to protein family HMM PF00196
YP_439878.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_439880.1	activates fatty acids by binding to coenzyme A
YP_439881.1	identified by match to protein family HMM PF00027
YP_439882.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_439884.1	identified by match to protein family HMM PF01810
YP_439887.1	identified by match to protein family HMM PF00392
YP_439888.1	identified by match to protein family HMM PF00106
YP_439890.1	identified by match to protein family HMM PF01594
YP_439891.1	identified by match to protein family HMM PF00583
YP_439892.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_439893.1	identified by match to protein family HMM PF00724
YP_439894.1	identified by match to protein family HMM PF01965
YP_439896.1	identified by match to protein family HMM PF00440
YP_439897.1	identified by match to protein family HMM PF02624; match to protein family HMM PF07812; match to protein family HMM TIGR00702
YP_439898.1	identified by match to protein family HMM PF05721
YP_439900.1	identified by match to protein family HMM PF04055
YP_439901.1	identified by match to protein family HMM PF04055
YP_439902.1	identified by match to protein family HMM PF08007
YP_439903.1	identified by match to protein family HMM PF02597
YP_439904.1	identified by match to protein family HMM PF02543
YP_439907.1	identified by match to protein family HMM PF03781
YP_439908.1	identified by match to protein family HMM PF04248
YP_439909.2	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_439911.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_439914.1	identified by match to protein family HMM PF00267
YP_439916.1	identified by match to protein family HMM PF03473; match to protein family HMM PF03476
YP_439917.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_439918.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_439919.1	identified by match to protein family HMM PF01547
YP_439920.1	identified by match to protein family HMM PF00528
YP_439921.1	identified by match to protein family HMM PF00005
YP_439922.1	identified by match to protein family HMM PF00267
YP_439923.1	identified by match to protein family HMM PF03328; match to protein family HMM TIGR02311
YP_439924.1	identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312
YP_439925.1	identified by match to protein family HMM PF02962
YP_439926.1	identified by match to protein family HMM PF02900; match to protein family HMM TIGR02298
YP_439927.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR02299
YP_439928.1	identified by match to protein family HMM PF01557; match to protein family HMM TIGR02303
YP_439929.1	identified by match to protein family HMM PF01557; match to protein family HMM TIGR02305
YP_439930.1	identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337
YP_439931.1	identified by match to protein family HMM PF07993
YP_439932.1	identified by match to protein family HMM PF06629
YP_439933.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_439934.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_439936.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_439939.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06719
YP_439940.1	identified by match to protein family HMM PF00111; match to protein family HMM PF01799
YP_439941.1	identified by match to protein family HMM PF02738; match to protein family HMM TIGR01409
YP_439942.1	identified by match to protein family HMM PF00486
YP_439943.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_439945.1	identified by match to protein family HMM PF00196
YP_439946.1	identified by match to protein family HMM PF01204
YP_439947.1	identified by match to protein family HMM PF07690
YP_439948.1	identified by match to protein family HMM PF06224
YP_439949.1	identified by match to protein family HMM PF07866
YP_439950.1	identified by match to protein family HMM PF00583
YP_439951.1	identified by match to protein family HMM PF07298
YP_439952.1	identified by match to protein family HMM PF04993
YP_439953.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687
YP_439954.1	upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism
YP_439955.1	identified by match to protein family HMM PF00581
YP_439958.1	identified by match to protein family HMM PF01380
YP_439959.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_439960.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_439961.1	identified by match to protein family HMM PF05988
YP_439962.1	identified by match to protein family HMM PF02798
YP_439963.1	identified by match to protein family HMM PF00903
YP_439965.1	identified by match to protein family HMM PF06202
YP_439968.1	identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601
YP_439973.1	identified by match to protein family HMM PF00034
YP_439974.1	identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904
YP_439975.2	identified by match to protein family HMM PF01734
YP_439976.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_439977.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_439982.1	catalyzes the formation of glutamate from glutamine
YP_439983.1	identified by match to protein family HMM PF00445
YP_439984.1	identified by match to protein family HMM PF00296
YP_439985.1	identified by match to protein family HMM TIGR01730
YP_439986.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02687
YP_439987.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_439988.1	identified by match to protein family HMM PF00440
YP_439991.1	identified by match to protein family HMM PF00501
YP_439992.1	identified by match to protein family HMM PF00378
YP_439993.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_439994.1	identified by match to protein family HMM TIGR01692
YP_439995.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_439996.1	identified by match to protein family HMM PF00501
YP_439997.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_439998.1	identified by match to protein family HMM PF00165
YP_439999.1	identified by match to protein family HMM PF01957
YP_440000.1	identified by match to protein family HMM PF01145
YP_440002.2	identified by match to protein family HMM PF00106; match to protein family HMM PF00561
YP_440007.1	identified by match to protein family HMM TIGR02594
YP_440008.1	identified by match to protein family HMM PF00860
YP_440013.1	identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199
YP_440014.1	identified by match to protein family HMM PF00111
YP_440015.1	identified by match to protein family HMM PF07690
YP_440016.1	identified by match to protein family HMM PF03929
YP_440017.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783
YP_440018.1	identified by match to protein family HMM PF00005
YP_440019.1	identified by match to protein family HMM PF00005
YP_440020.1	identified by match to protein family HMM TIGR01761
YP_440021.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733
YP_440022.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_440023.1	identified by match to protein family HMM PF00165
YP_440024.1	identified by match to protein family HMM PF00501
YP_440025.1	identified by match to protein family HMM PF00975
YP_440026.1	catalyzes the second reaction in the pyochelin biosynthetic pathway, the conversion of isochorismate to salicylate and pyruvate.
YP_440027.1	involved in the conversion of chorismate to salicylate
YP_440028.1	identified by match to protein family HMM PF01551
YP_440029.1	identified by match to protein family HMM PF00005
YP_440030.1	Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_440031.1	Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_440032.1	identified by match to protein family HMM PF02653
YP_440033.1	identified by match to protein family HMM PF01094
YP_440036.1	identified by match to protein family HMM PF00106
YP_440039.1	identified by match to protein family HMM PF07859
YP_440041.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_440042.1	identified by match to protein family HMM PF05853
YP_440043.1	identified by match to protein family HMM PF04069
YP_440044.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_440045.1	identified by match to protein family HMM PF07504
YP_440046.1	identified by match to protein family HMM PF01546; match to protein family HMM PF04389
YP_440047.1	identified by match to protein family HMM PF00267
YP_440048.1	identified by match to protein family HMM PF04069
YP_440049.1	identified by match to protein family HMM PF00884
YP_440050.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440051.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_440052.1	identified by match to protein family HMM PF00324
YP_440053.1	identified by match to protein family HMM PF04069
YP_440054.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_440055.1	identified by match to protein family HMM PF00355
YP_440057.1	identified by match to protein family HMM PF00766
YP_440058.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02754
YP_440059.1	identified by match to protein family HMM PF00724; match to protein family HMM PF07992
YP_440060.1	identified by match to protein family HMM PF02830
YP_440061.1	identified by match to protein family HMM PF01244
YP_440062.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_440063.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_440064.1	identified by match to protein family HMM PF00107
YP_440065.1	identified by match to protein family HMM PF00532
YP_440066.1	identified by match to protein family HMM PF02435
YP_440067.1	identified by match to protein family HMM PF00251
YP_440069.1	identified by match to protein family HMM PF00529
YP_440070.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_440071.1	identified by match to protein family HMM TIGR01556
YP_440073.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_440074.1	identified by match to protein family HMM PF03033
YP_440079.1	identified by match to protein family HMM PF06744; match to protein family HMM PF06761
YP_440080.1	identified by match to protein family HMM PF00691
YP_440081.1	identified by match to protein family HMM PF05936
YP_440085.1	identified by match to protein family HMM PF00805
YP_440086.1	identified by match to protein family HMM PF00805
YP_440087.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_440088.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_440089.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724
YP_440091.1	identified by match to protein family HMM PF05947
YP_440093.1	identified by match to protein family HMM PF05638
YP_440094.1	identified by match to protein family HMM PF05943
YP_440095.1	identified by match to protein family HMM PF05591
YP_440096.1	identified by match to protein family HMM PF06812
YP_440097.1	identified by match to protein family HMM PF02550
YP_440098.1	identified by match to protein family HMM PF01066
YP_440099.1	identified by match to protein family HMM PF03171
YP_440100.1	identified by match to protein family HMM TIGR00374
YP_440102.1	identified by match to protein family HMM TIGR02320
YP_440104.1	identified by match to protein family HMM PF00266
YP_440105.1	identified by match to protein family HMM PF01965
YP_440106.1	identified by match to protein family HMM PF00165
YP_440108.1	identified by match to protein family HMM PF00561
YP_440109.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_440110.1	identified by match to protein family HMM PF00392
YP_440111.1	identified by match to protein family HMM PF01841
YP_440112.1	identified by match to protein family HMM PF04169
YP_440113.1	identified by match to protein family HMM PF01841
YP_440114.1	identified by match to protein family HMM PF01841
YP_440115.1	identified by match to protein family HMM PF04168
YP_440116.1	identified by match to protein family HMM PF04169; match to protein family HMM PF04174
YP_440117.1	identified by match to protein family HMM PF00881
YP_440119.1	identified by match to protein family HMM PF03067
YP_440120.1	identified by match to protein family HMM PF00578
YP_440121.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_440124.1	identified by match to protein family HMM PF00441; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF08028
YP_440125.1	identified by match to protein family HMM PF00753
YP_440126.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis
YP_440129.1	identified by match to protein family HMM PF00501
YP_440130.1	identified by match to protein family HMM PF02867; match to protein family HMM TIGR02504
YP_440131.1	identified by match to protein family HMM PF05232
YP_440132.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth
YP_440133.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_440135.1	catalyzes the formation of putrescine from agmatine
YP_440136.1	identified by match to protein family HMM PF00171
YP_440137.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_440139.1	identified by match to protein family HMM PF07722
YP_440140.1	identified by match to protein family HMM PF00120
YP_440141.1	identified by match to protein family HMM PF00202
YP_440142.1	identified by match to protein family HMM PF01547
YP_440143.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187
YP_440144.1	identified by match to protein family HMM PF00528
YP_440145.1	identified by match to protein family HMM PF00528
YP_440149.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_440150.1	identified by match to protein family HMM PF05425
YP_440151.1	identified by match to protein family HMM PF04234
YP_440153.1	identified by match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409
YP_440154.1	identified by match to protein family HMM PF02321
YP_440157.1	identified by match to protein family HMM PF00633; match to protein family HMM PF02231; match to protein family HMM PF02811
YP_440158.1	identified by match to protein family HMM PF00768
YP_440160.1	identified by match to protein family HMM PF01965
YP_440161.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_440163.1	identified by match to protein family HMM PF02678; match to protein family HMM PF07883
YP_440164.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440169.1	identified by match to protein family HMM PF00535
YP_440170.1	identified by match to protein family HMM PF00132
YP_440171.1	identified by match to protein family HMM PF01075
YP_440172.1	identified by match to protein family HMM PF01075
YP_440173.1	identified by match to protein family HMM PF00535
YP_440175.1	identified by match to protein family HMM PF00583; match to protein family HMM PF01041
YP_440176.1	identified by match to protein family HMM PF01041
YP_440177.1	identified by match to protein family HMM PF07993; match to protein family HMM TIGR02622
YP_440178.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623
YP_440179.1	identified by match to protein family HMM PF02706
YP_440180.1	identified by match to protein family HMM PF02563
YP_440182.1	identified by match to protein family HMM PF06082
YP_440183.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02776
YP_440188.1	identified by match to protein family HMM PF01476
YP_440190.1	identified by match to protein family HMM PF00589
YP_440192.1	identified by match to protein family HMM PF03681
YP_440193.1	identified by match to protein family HMM PF07927
YP_440197.1	identified by match to protein family HMM PF00239; match to protein family HMM PF02796
YP_440198.1	identified by match to protein family HMM PF00709
YP_440200.1	identified by match to protein family HMM PF05930
YP_440203.1	identified by match to protein family HMM PF01381
YP_440204.1	identified by match to protein family HMM PF00816
YP_440206.1	identified by match to protein family HMM PF01381
YP_440207.1	identified by match to protein family HMM PF00589
YP_440208.1	identified by match to protein family HMM PF00474
YP_440210.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_440211.1	identified by match to protein family HMM PF00892
YP_440212.1	identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645
YP_440213.1	identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723
YP_440214.1	identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754
YP_440215.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_440216.1	identified by match to protein family HMM PF04324
YP_440217.1	identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352
YP_440218.1	identified by match to protein family HMM PF01618
YP_440219.1	identified by match to protein family HMM PF02472
YP_440220.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440221.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_440224.1	identified by match to protein family HMM PF03928
YP_440226.1	identified by match to protein family HMM PF03239
YP_440229.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_440230.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_440231.1	catalyzes the formation of acetoacetate from 3-hydroxybutyrate
YP_440232.1	identified by match to protein family HMM PF00248
YP_440233.1	identified by match to protein family HMM PF04378
YP_440234.1	identified by match to protein family HMM PF00376; match to protein family HMM TIGR02044
YP_440237.1	identified by match to protein family HMM PF00171
YP_440238.1	identified by match to protein family HMM TIGR02335
YP_440239.1	identified by match to protein family HMM PF00528
YP_440240.1	identified by match to protein family HMM PF00528
YP_440241.1	identified by match to protein family HMM PF00005
YP_440242.1	identified by match to protein family HMM PF01547
YP_440243.1	catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate
YP_440244.1	identified by match to protein family HMM PF07690
YP_440245.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_440246.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_440247.1	identified by match to protein family HMM PF00903
YP_440248.1	identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795
YP_440249.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_440251.1	identified by match to protein family HMM PF00165
YP_440252.1	identified by match to protein family HMM PF00070; match to protein family HMM PF04324; match to protein family HMM PF07992
YP_440253.1	identified by match to protein family HMM PF00111
YP_440254.1	identified by match to protein family HMM PF01266
YP_440255.1	identified by match to protein family HMM PF05544
YP_440256.1	identified by match to protein family HMM PF00701
YP_440257.1	identified by match to protein family HMM PF00324
YP_440258.1	identified by match to protein family HMM PF00171
YP_440259.1	identified by match to protein family HMM PF02615
YP_440260.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_440261.1	identified by match to protein family HMM PF07690
YP_440262.1	identified by match to protein family HMM PF07681
YP_440265.1	identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795
YP_440266.1	identified by match to protein family HMM PF02589
YP_440267.1	identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273
YP_440268.1	identified by match to protein family HMM PF02754
YP_440269.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_440271.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_440274.1	identified by match to protein family HMM PF03180
YP_440275.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472
YP_440276.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801
YP_440279.1	identified by match to protein family HMM PF00202
YP_440280.1	catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation
YP_440281.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM PF07993; match to protein family HMM TIGR01746
YP_440282.1	identified by match to protein family HMM PF07991; match to protein family HMM TIGR00465
YP_440283.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784
YP_440284.1	identified by match to protein family HMM PF00501
YP_440286.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_440287.1	identified by match to protein family HMM PF00501
YP_440288.1	identified by match to protein family HMM PF03547
YP_440289.1	identified by match to protein family HMM PF00583
YP_440290.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_440291.1	identified by match to protein family HMM PF00375
YP_440292.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_440293.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915
YP_440294.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_440295.1	identified by match to protein family HMM PF07859
YP_440296.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440298.1	identified by match to protein family HMM PF01609
YP_440300.1	identified by match to protein family HMM PF06516
YP_440302.1	identified by match to protein family HMM PF01361
YP_440303.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440304.1	catalyzes the formation of selenophosphate from selenide and ATP
YP_440305.1	identified by match to protein family HMM PF00892
YP_440306.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_440307.1	identified by match to protein family HMM PF00202; match to protein family HMM TIGR00700
YP_440308.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780
YP_440309.1	identified by match to protein family HMM PF00355
YP_440312.1	identified by match to protein family HMM PF00891
YP_440313.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229
YP_440314.2	catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA
YP_440315.1	identified by match to protein family HMM PF01614; match to protein family HMM TIGR02431
YP_440316.1	identified by match to protein family HMM PF00440
YP_440318.1	identified by match to protein family HMM PF03466
YP_440319.1	identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096
YP_440320.1	identified by match to protein family HMM PF01757
YP_440321.1	identified by match to protein family HMM PF04952
YP_440322.1	identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363
YP_440323.1	identified by match to protein family HMM PF00267
YP_440327.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786
YP_440328.1	identified by match to protein family HMM PF05171
YP_440329.1	identified by match to protein family HMM PF01497
YP_440330.1	identified by match to protein family HMM PF01032
YP_440331.1	with HmuTU is involved in the import of hemin
YP_440332.1	identified by match to protein family HMM PF03458
YP_440333.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_440334.1	specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_440336.1	identified by match to protein family HMM PF01654
YP_440337.1	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203
YP_440340.1	identified by match to protein family HMM PF00724
YP_440341.1	catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid
YP_440342.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_440343.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440344.1	identified by match to protein family HMM PF00494
YP_440345.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440346.1	identified by match to protein family HMM PF00881
YP_440347.1	identified by match to protein family HMM PF07859
YP_440348.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440349.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_440350.1	identified by match to protein family HMM PF00171
YP_440351.1	identified by match to protein family HMM PF04909
YP_440353.1	identified by match to protein family HMM PF05359
YP_440354.1	identified by match to protein family HMM PF06742
YP_440356.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_440358.1	identified by match to protein family HMM PF00583
YP_440364.1	identified by match to protein family HMM PF02308
YP_440365.1	identified by match to protein family HMM PF07221
YP_440366.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440367.1	identified by match to protein family HMM PF07690
YP_440368.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203
YP_440369.1	identified by match to protein family HMM PF04055
YP_440373.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_440374.1	identified by match to protein family HMM PF04303; match to protein family HMM TIGR02334
YP_440375.1	Catalyzes the conversion of citrate to isocitrate
YP_440376.1	catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity
YP_440377.1	catalyzes the formation of pyruvate and succinate from 2-methylisocitrate
YP_440378.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM TIGR01199; match to protein family HMM TIGR02329
YP_440379.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_440381.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR01249
YP_440383.1	identified by match to protein family HMM PF00903
YP_440384.1	identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326
YP_440385.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_440388.1	identified by match to protein family HMM PF01557
YP_440389.1	identified by match to protein family HMM PF01614
YP_440392.1	catalyzes the formation of indole-3-acetic acid from indole-3-acetamide
YP_440394.1	identified by match to protein family HMM PF00583; match to protein family HMM PF02629
YP_440395.1	identified by match to protein family HMM PF00816
YP_440398.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199
YP_440401.1	identified by match to protein family HMM PF00597
YP_440402.1	identified by match to protein family HMM PF03573
YP_440403.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_440404.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_440405.1	identified by match to protein family HMM PF00528
YP_440406.1	identified by match to protein family HMM PF00528
YP_440407.1	identified by match to protein family HMM PF00496
YP_440408.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_440409.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_440411.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440413.1	identified by match to protein family HMM PF03972
YP_440415.1	identified by match to protein family HMM PF02515
YP_440417.1	identified by match to protein family HMM PF00857
YP_440418.1	identified by match to protein family HMM PF07690
YP_440419.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_440421.1	identified by match to protein family HMM PF02515
YP_440422.1	identified by match to protein family HMM PF01614
YP_440424.1	identified by match to protein family HMM PF00267
YP_440425.1	identified by match to protein family HMM PF03972; match to protein family HMM TIGR01409
YP_440427.1	identified by match to protein family HMM TIGR00688
YP_440428.1	identified by match to protein family HMM PF00708
YP_440429.1	identified by match to protein family HMM PF07993
YP_440430.1	identified by match to protein family HMM PF00535
YP_440431.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_440432.1	identified by match to protein family HMM PF04055
YP_440434.1	identified by match to protein family HMM PF01609
YP_440435.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440437.1	identified by match to protein family HMM PF00202
YP_440439.1	identified by match to protein family HMM PF04328
YP_440440.1	identified by match to protein family HMM PF02554
YP_440442.1	identified by match to protein family HMM PF00561
YP_440443.1	identified by match to protein family HMM PF07171; match to protein family HMM PF07364
YP_440444.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440446.1	identified by match to protein family HMM PF04138
YP_440448.1	identified by match to protein family HMM PF00535
YP_440451.1	identified by match to protein family HMM PF04964
YP_440452.1	identified by match to protein family HMM PF04964
YP_440453.1	identified by match to protein family HMM PF01478
YP_440455.1	identified by match to protein family HMM PF06981
YP_440456.1	identified by match to protein family HMM PF00263
YP_440459.1	identified by match to protein family HMM PF07811
YP_440460.1	identified by match to protein family HMM PF07811
YP_440461.1	identified by match to protein family HMM PF00072
YP_440462.1	identified by match to protein family HMM PF00437
YP_440463.1	identified by match to protein family HMM PF00482
YP_440464.1	identified by match to protein family HMM PF00482
YP_440466.1	identified by match to protein family HMM PF01609
YP_440467.1	identified by match to protein family HMM PF01037
YP_440468.2	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_440469.1	identified by match to protein family HMM PF01042
YP_440470.1	identified by match to protein family HMM PF00267
YP_440471.1	identified by match to protein family HMM PF00324
YP_440472.1	identified by match to protein family HMM PF00392
YP_440473.1	identified by match to protein family HMM PF07171; match to protein family HMM PF07364
YP_440474.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_440475.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440478.1	identified by match to protein family HMM PF06629
YP_440481.1	identified by match to protein family HMM PF03446; match to protein family HMM PF03807
YP_440483.1	identified by match to protein family HMM PF01648
YP_440484.1	identified by match to protein family HMM PF07690
YP_440485.1	identified by match to protein family HMM PF01613
YP_440488.1	E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_440489.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_440490.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_440491.1	identified by match to protein family HMM PF00676
YP_440495.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440496.1	identified by match to protein family HMM PF00037
YP_440497.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01734; match to protein family HMM PF07992
YP_440498.1	identified by match to protein family HMM PF01258
YP_440499.1	identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849
YP_440500.1	class I; catalyzes the formation of deoxyribonucleotides from their corresponding ribonucleotides
YP_440503.1	identified by match to protein family HMM PF00916; match to protein family HMM PF01740
YP_440504.1	identified by match to protein family HMM PF00571
YP_440508.1	identified by match to protein family HMM PF00011
YP_440509.1	identified by match to protein family HMM PF01522
YP_440511.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912
YP_440517.1	identified by match to protein family HMM PF05488
YP_440518.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_440521.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_440522.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_440523.1	identified by match to protein family HMM PF05494
YP_440525.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_440526.1	identified by match to protein family HMM PF00561
YP_440527.1	identified by match to protein family HMM PF01648
YP_440531.1	identified by match to protein family HMM PF02687
YP_440532.1	identified by match to protein family HMM PF00005
YP_440533.1	identified by match to protein family HMM PF00743
YP_440534.1	identified by match to protein family HMM PF00067
YP_440535.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF02801
YP_440536.1	identified by match to protein family HMM PF00698
YP_440538.1	identified by match to protein family HMM PF04333
YP_440540.1	identified by match to protein family HMM PF00202
YP_440542.1	similar to ATP-binding component of ABC transporters
YP_440543.1	similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine
YP_440544.1	similar to periplasmic-binding component of ABC transporters
YP_440546.1	identified by match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787
YP_440548.1	identified by match to protein family HMM PF00494
YP_440550.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_440551.1	identified by match to protein family HMM PF04509
YP_440552.1	identified by match to protein family HMM PF00072
YP_440553.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_440554.1	identified by match to protein family HMM PF03358
YP_440555.2	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_440557.1	identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014
YP_440558.1	identified by match to protein family HMM PF01656
YP_440559.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_440561.3	ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity
YP_440563.1	catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules
YP_440564.1	identified by match to protein family HMM PF00216
YP_440565.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_440566.1	identified by match to protein family HMM PF01464
YP_440567.1	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517
YP_440568.1	identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533
YP_440569.1	identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120
YP_440571.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532
YP_440572.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532
YP_440573.1	identified by match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532
YP_440574.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_440575.1	identified by match to protein family HMM PF03934
YP_440576.1	identified by match to protein family HMM PF05134; match to protein family HMM TIGR01709
YP_440577.1	identified by match to protein family HMM PF04612
YP_440579.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_440581.1	identified by match to protein family HMM PF01047
YP_440582.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_440583.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440584.1	identified by match to protein family HMM PF03788
YP_440585.1	identified by match to protein family HMM PF04172
YP_440586.1	interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring
YP_440587.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_440588.1	identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480
YP_440589.1	identified by match to protein family HMM PF04347
YP_440590.3	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_440591.1	with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus
YP_440592.1	identified by match to protein family HMM PF01311; match to protein family HMM TIGR01400
YP_440593.1	identified by match to protein family HMM PF00376
YP_440596.1	identified by match to protein family HMM PF00005
YP_440597.1	identified by match to protein family HMM PF00528
YP_440598.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_440599.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_440601.1	identified by match to protein family HMM PF01555
YP_440602.1	identified by match to protein family HMM PF04851
YP_440604.1	identified by match to protein family HMM PF00165
YP_440605.1	identified by match to protein family HMM PF00005
YP_440606.1	identified by match to protein family HMM PF00005
YP_440607.1	identified by match to protein family HMM PF02653
YP_440608.1	identified by match to protein family HMM PF02653
YP_440610.1	identified by match to protein family HMM PF00171
YP_440613.1	identified by match to protein family HMM PF00106
YP_440614.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_440615.1	identified by match to protein family HMM PF03551
YP_440617.1	identified by match to protein family HMM PF00487
YP_440619.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_440620.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_440621.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_440622.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_440624.1	identified by match to protein family HMM PF02515
YP_440631.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545
YP_440632.1	identified by match to protein family HMM PF00199
YP_440633.1	identified by match to protein family HMM PF01292
YP_440635.1	identified by match to protein family HMM PF07508
YP_440636.1	identified by match to protein family HMM PF02195
YP_440637.1	identified by match to protein family HMM PF01527
YP_440641.1	identified by match to protein family HMM PF00583
YP_440643.1	identified by match to protein family HMM PF07152
YP_440644.1	identified by match to protein family HMM PF00903
YP_440645.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589
YP_440646.1	identified by match to protein family HMM PF00730
YP_440647.1	involved in the first step of glutathione biosynthesis
YP_440648.1	identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545
YP_440652.1	identified by match to protein family HMM PF00589
YP_440654.1	identified by match to protein family HMM PF00589
YP_440662.1	identified by match to protein family HMM PF00271
YP_440667.1	identified by match to protein family HMM PF01381
YP_440670.1	Bacteriophage A118; similar to lin0084
YP_440673.1	identified by match to protein family HMM PF00069
YP_440680.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_440681.1	identified by match to protein family HMM PF01734
YP_440682.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_440683.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440684.3	decatenates replicating daughter chromosomes
YP_440686.1	identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732
YP_440687.3	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_440688.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_440689.1	identified by match to protein family HMM PF01810
YP_440690.1	identified by match to protein family HMM PF01435
YP_440691.1	identified by match to protein family HMM PF01189; match to protein family HMM TIGR00563
YP_440693.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_440694.1	identified by match to protein family HMM PF00072; match to protein family HMM TIGR01199
YP_440695.1	identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364
YP_440697.1	identified by match to protein family HMM PF01242
YP_440698.1	identified by match to protein family HMM PF03328
YP_440700.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210
YP_440701.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_440702.1	identified by match to protein family HMM PF04093
YP_440703.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_440704.1	functions in MreBCD complex in some organisms
YP_440705.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_440706.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_440707.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_440708.1	identified by match to protein family HMM PF03976
YP_440709.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_440710.1	identified by match to protein family HMM PF00107
YP_440711.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06719
YP_440712.1	identified by match to protein family HMM PF01435
YP_440713.1	identified by match to protein family HMM PF07690
YP_440714.1	identified by match to protein family HMM PF07021; match to protein family HMM TIGR02081
YP_440715.1	Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine
YP_440716.1	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
YP_440717.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01993
YP_440718.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_440720.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_440721.1	identified by match to protein family HMM PF00072; match to protein family HMM PF02954; match to protein family HMM TIGR01199
YP_440722.1	heat shock protein involved in degradation of misfolded proteins
YP_440723.3	heat shock protein involved in degradation of misfolded proteins
YP_440724.1	identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420
YP_440726.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_440728.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_440729.1	identified by match to protein family HMM PF04340
YP_440730.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_440731.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
YP_440732.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_440734.1	identified by match to protein family HMM PF05721
YP_440736.1	identified by match to protein family HMM PF00248
YP_440738.1	identified by match to protein family HMM PF00892
YP_440739.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_440741.1	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages
YP_440742.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440743.1	catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate
YP_440744.1	identified by match to protein family HMM PF00171
YP_440745.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00893
YP_440747.1	identified by match to protein family HMM PF01188
YP_440748.1	identified by match to protein family HMM PF04292; match to protein family HMM PF04295
YP_440749.1	identified by match to protein family HMM PF07993
YP_440750.1	identified by match to protein family HMM PF00171
YP_440751.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_440752.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_440753.1	identified by match to protein family HMM PF02120
YP_440754.1	identified by match to protein family HMM PF02050; match to protein family HMM TIGR02473
YP_440755.1	identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545
YP_440756.3	binds to and inhibits the function of flagella specific ATPase FliI
YP_440757.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_440758.3	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_440759.1	FliE; identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205
YP_440760.1	identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208
YP_440764.1	identified by match to protein family HMM PF03929
YP_440765.1	identified by match to protein family HMM PF02625
YP_440766.1	identified by match to protein family HMM PF00324
YP_440767.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_440768.1	identified by match to protein family HMM PF02518
YP_440774.1	identified by match to protein family HMM PF00004
YP_440775.1	identified by match to protein family HMM PF01266
YP_440776.1	identified by match to protein family HMM PF01355
YP_440777.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_440778.1	identified by match to protein family HMM PF00496
YP_440779.1	identified by match to protein family HMM PF00528
YP_440780.1	identified by match to protein family HMM PF00528
YP_440781.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_440782.1	Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides
YP_440783.1	identified by match to protein family HMM PF07446
YP_440784.1	identified by match to protein family HMM PF06166
YP_440785.1	identified by match to protein family HMM PF06149
YP_440786.1	identified by match to protein family HMM PF03746
YP_440787.1	identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724
YP_440788.1	identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370
YP_440790.1	identified by match to protein family HMM PF01812
YP_440791.1	identified by match to protein family HMM PF01464
YP_440792.1	identified by match to protein family HMM PF07993
YP_440793.1	identified by match to protein family HMM PF02798
YP_440794.3	catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases
YP_440795.1	identified by match to protein family HMM PF05130
YP_440797.3	required for the assembly of the flagellar basal body P-ring
YP_440798.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod
YP_440799.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_440800.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production
YP_440801.1	the hook connects flagellar basal body to the flagellar filament
YP_440802.1	FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod
YP_440803.1	makes up the distal portion of the flagellar basal body rod
YP_440804.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Burkholderia thailandensis has 2 copies of this and other flagella genes
YP_440805.3	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_440806.1	Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space
YP_440807.1	identified by match to protein family HMM PF07317
YP_440808.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_440809.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.
YP_440810.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_440811.1	Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence
YP_440812.1	identified by match to protein family HMM PF02417
YP_440813.1	identified by match to protein family HMM PF02417
YP_440815.1	identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686
YP_440816.1	identified by match to protein family HMM PF06912
YP_440818.1	identified by match to protein family HMM PF00267
YP_440822.1	identified by match to protein family HMM PF00535
YP_440824.1	identified by match to protein family HMM PF01609
YP_440825.1	identified by match to protein family HMM PF04966
YP_440827.1	identified by match to protein family HMM PF01566
YP_440830.1	identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01424
YP_440832.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_440833.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672
YP_440834.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440837.1	catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis
YP_440840.1	identified by match to protein family HMM PF00403
YP_440841.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_440842.1	identified by match to protein family HMM PF04011
YP_440843.1	identified by match to protein family HMM PF04536
YP_440844.1	identified by match to protein family HMM PF04536
YP_440845.1	identified by match to protein family HMM PF01382
YP_440846.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_440847.1	identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173
YP_440848.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_440849.1	identified by match to protein family HMM TIGR00526
YP_440852.1	identified by match to protein family HMM PF02636
YP_440856.1	identified by match to protein family HMM PF00294
YP_440857.1	identified by match to protein family HMM PF07221
YP_440858.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_440859.1	identified by match to protein family HMM PF00015
YP_440860.1	identified by match to protein family HMM PF01758
YP_440863.1	identified by match to protein family HMM PF00267
YP_440864.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440865.1	identified by match to protein family HMM PF03060; similar to blr1330
YP_440866.1	identified by match to protein family HMM PF00561
YP_440867.1	identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199
YP_440868.1	identified by match to protein family HMM PF00892
YP_440869.1	identified by match to protein family HMM PF06945
YP_440870.1	identified by match to protein family HMM PF04073
YP_440871.1	catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA
YP_440872.1	identified by match to protein family HMM PF02826
YP_440873.1	identified by match to protein family HMM PF00903
YP_440874.1	identified by match to protein family HMM PF06821
YP_440875.1	identified by match to protein family HMM PF04185; match to protein family HMM PF05506
YP_440877.1	identified by match to protein family HMM PF01037
YP_440878.1	identified by match to protein family HMM PF03591
YP_440879.1	identified by match to protein family HMM PF06063
YP_440880.1	identified by match to protein family HMM PF00561
YP_440881.1	identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674
YP_440883.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971
YP_440884.1	identified by match to protein family HMM PF00450
YP_440885.1	identified by match to protein family HMM PF01007; match to protein family HMM PF07885
YP_440886.1	catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
YP_440887.1	identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831
YP_440888.1	identified by match to protein family HMM PF00563
YP_440890.1	identified by match to protein family HMM PF00245
YP_440891.1	identified by match to protein family HMM PF00245
YP_440894.1	identified by match to protein family HMM PF03932
YP_440895.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433
YP_440896.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_440897.1	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine
YP_440898.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_440901.1	identified by match to protein family HMM PF00106
YP_440902.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_440903.1	identified by match to protein family HMM PF00484
YP_440904.1	catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol
YP_440905.1	identified by match to protein family HMM PF00753
YP_440906.1	identified by match to protein family HMM PF00005
YP_440907.1	identified by match to protein family HMM PF00496
YP_440908.1	identified by match to protein family HMM PF01047
YP_440909.3	identified by match to protein family HMM PF00106
YP_440910.1	identified by match to protein family HMM PF00106
YP_440911.1	identified by match to protein family HMM PF01323
YP_440912.1	identified by match to protein family HMM PF05036
YP_440913.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_440915.1	identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082
YP_440916.1	identified by match to protein family HMM PF02574
YP_440919.1	identified by match to protein family HMM PF01614
YP_440920.1	identified by match to protein family HMM PF01557
YP_440921.3	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_440923.1	identified by match to protein family HMM PF01734
YP_440925.1	identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199
YP_440927.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_440928.1	catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon
YP_440930.1	identified by match to protein family HMM PF00149; match to protein family HMM PF02872
YP_440931.1	identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056
YP_440932.1	identified by match to protein family HMM PF00005
YP_440935.1	identified by match to protein family HMM PF04892
YP_440938.1	identified by match to protein family HMM PF00768; match to protein family HMM PF07943
YP_440939.1	identified by match to protein family HMM PF01063
YP_440940.1	identified by match to protein family HMM PF04359
YP_440941.1	Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence
YP_440943.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_440944.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_440945.1	identified by match to protein family HMM PF00107
YP_440946.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_440947.1	identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066
YP_440950.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199
YP_440951.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_440952.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_440953.1	identified by match to protein family HMM PF00441
YP_440954.1	identified by match to protein family HMM PF02515
YP_440955.1	identified by match to protein family HMM PF04341
YP_440956.1	member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake
YP_440957.1	involved in the transport of C4-dicarboxylates across the membrane
YP_440958.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_440959.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199
YP_440962.1	identified by match to protein family HMM PF00975
YP_440963.1	identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368
YP_440964.1	identified by match to protein family HMM PF04380
YP_440965.1	identified by match to protein family HMM PF00543
YP_440966.1	identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836
YP_440967.1	identified by match to protein family HMM TIGR02049
YP_440968.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_440969.1	identified by match to protein family HMM PF03610
YP_440970.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_440971.1	identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417
YP_440972.1	identified by match to protein family HMM PF00899; match to protein family HMM PF05237
YP_440973.1	identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225
YP_440974.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_440975.1	identified by match to protein family HMM PF00581
YP_440976.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181
YP_440977.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_440978.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_440979.1	identified by match to protein family HMM PF01661
YP_440980.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185
YP_440984.1	identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF00691; match to protein family HMM PF02790
YP_440985.1	identified by match to protein family HMM PF00115
YP_440986.1	involved in the insertion of copper into subunit I of cytochrome C oxidase
YP_440988.1	identified by match to protein family HMM PF00510
YP_440992.1	identified by match to protein family HMM PF02628
YP_440993.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_440994.1	identified by match to protein family HMM PF02630
YP_440995.1	identified by match to protein family HMM PF03795
YP_440996.1	identified by match to protein family HMM PF00015
YP_440997.1	identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363
YP_440998.1	identified by match to protein family HMM PF04392
YP_440999.1	identified by match to protein family HMM PF02653
YP_441000.1	identified by match to protein family HMM PF00005
YP_441003.3	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.
YP_441004.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_441005.1	identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221
YP_441006.1	identified by match to protein family HMM PF01380
YP_441007.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR00830; match to protein family HMM TIGR01417
YP_441008.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998
YP_441009.1	identified by match to protein family HMM PF00728; match to protein family HMM PF03173
YP_441010.1	identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106
YP_441011.1	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203
YP_441012.1	identified by match to protein family HMM PF01654
YP_441014.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters
YP_441017.1	identified by match to protein family HMM PF00682; match to protein family HMM TIGR00970
YP_441018.1	identified by match to protein family HMM PF00583
YP_441019.1	identified by match to protein family HMM PF00591; match to protein family HMM PF02885
YP_441020.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879
YP_441021.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378
YP_441022.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374
YP_441023.1	identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262
YP_441024.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_441026.1	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095
YP_441027.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_441028.1	identified by match to protein family HMM PF00037
YP_441029.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_441030.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_441031.3	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_441032.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_441033.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_441034.1	Incorporates lipoproteins in the outer membrane after they are released by the LolA protein
YP_441035.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07721
YP_441036.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_441037.1	identified by match to protein family HMM PF00293; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084
YP_441038.1	identified by match to protein family HMM PF02190
YP_441039.1	identified by match to protein family HMM PF03668
YP_441040.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_441041.1	identified by match to protein family HMM PF00359; match to protein family HMM TIGR01419
YP_441042.1	identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741
YP_441043.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_441044.1	identified by match to protein family HMM PF00005
YP_441045.1	identified by match to protein family HMM PF03968
YP_441046.1	identified by match to protein family HMM PF06835
YP_441047.1	identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670
YP_441048.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393
YP_441049.1	identified by match to protein family HMM PF02080; match to protein family HMM PF02254
YP_441050.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_441051.1	identified by match to protein family HMM PF01810
YP_441052.1	identified by match to protein family HMM PF00293
YP_441053.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_441055.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630
YP_441056.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_441057.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_441058.1	identified by match to protein family HMM PF01738
YP_441062.1	identified by match to protein family HMM PF00872
YP_441063.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_441064.1	identified by match to protein family HMM PF01839; match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_441070.1	identified by match to protein family HMM PF00498
YP_441071.1	identified by match to protein family HMM PF00069; match to protein family HMM PF06498; match to protein family HMM PF07721
YP_441074.1	identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702
YP_441075.1	identified by match to protein family HMM PF00596
YP_441076.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_441077.1	identified by match to protein family HMM PF01943
YP_441078.1	identified by match to protein family HMM PF00534
YP_441079.1	identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479
YP_441081.1	identified by match to protein family HMM PF00534
YP_441082.1	identified by match to protein family HMM PF01569
YP_441083.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199
YP_441085.1	identified by match to protein family HMM PF00703
YP_441088.1	identified by match to protein family HMM PF02771; match to protein family HMM PF08028
YP_441089.1	Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides
YP_441092.1	identified by match to protein family HMM PF02397
YP_441093.1	identified by match to protein family HMM PF02563
YP_441094.1	identified by match to protein family HMM PF00534
YP_441095.1	identified by match to protein family HMM PF07452
YP_441096.1	identified by match to protein family HMM PF07859
YP_441098.1	identified by match to protein family HMM PF07690
YP_441099.1	identified by match to protein family HMM PF01047
YP_441100.1	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382
YP_441102.1	identified by match to protein family HMM PF01380
YP_441103.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07908; match to protein family HMM PF07969
YP_441104.1	identified by match to protein family HMM PF01042
YP_441105.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_441106.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_441107.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913
YP_441108.1	identified by match to protein family HMM PF01230
YP_441109.1	identified by match to protein family HMM PF06155
YP_441110.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_441111.1	identified by match to protein family HMM PF04280
YP_441112.1	identified by match to protein family HMM PF06843
YP_441113.1	an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions
YP_441114.1	identified by match to protein family HMM PF05724
YP_441115.1	identified by match to protein family HMM TIGR02605
YP_441116.1	identified by match to protein family HMM PF04367
YP_441117.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_441118.1	converts dATP to dAMP and pyrophosphate
YP_441119.1	identified by match to protein family HMM PF00614
YP_441120.1	identified by match to protein family HMM PF00440
YP_441121.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_441122.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_441123.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_441124.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_441126.1	identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129
YP_441127.1	identified by match to protein family HMM TIGR02664
YP_441128.1	identified by match to protein family HMM PF03061
YP_441129.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_441130.1	identified by match to protein family HMM PF00483
YP_441132.1	identified by match to protein family HMM PF04453
YP_441133.1	identified by match to protein family HMM PF00639
YP_441134.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_441135.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_441136.1	identified by match to protein family HMM PF00892
YP_441137.1	identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068
YP_441138.1	identified by match to protein family HMM PF01863
YP_441139.1	identified by match to protein family HMM PF01553
YP_441140.1	Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate
YP_441141.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_441142.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_441143.1	Transfers the fatty acyl group on membrane lipoproteins
YP_441144.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03471
YP_441145.1	identified by match to protein family HMM PF04752
YP_441146.3	contains unknown N-terminal domain/metalloprotease C-terminal domain
YP_441147.1	identified by match to protein family HMM PF02562
YP_441148.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_441149.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_441150.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_441151.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_441152.1	identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506
YP_441153.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_441155.1	identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861
YP_441156.1	Converts glycerol and ADP to glycerol-3-phosphate and ADP
YP_441157.1	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane
YP_441160.1	identified by match to protein family HMM PF00455
YP_441161.1	identified by match to protein family HMM PF01019
YP_441164.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_441165.1	identified by match to protein family HMM PF00034
YP_441166.1	identified by match to protein family HMM PF00034
YP_441167.1	identified by match to protein family HMM PF05425
YP_441168.3	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_441169.1	identified by match to protein family HMM PF04828
YP_441170.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409
YP_441171.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF03707
YP_441172.1	identified by match to protein family HMM PF00072
YP_441175.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00785; match to protein family HMM TIGR00229
YP_441176.1	identified by match to protein family HMM PF01565; match to protein family HMM TIGR01409
YP_441177.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_441178.1	identified by match to protein family HMM PF00005
YP_441179.1	identified by match to protein family HMM PF00528
YP_441180.1	identified by match to protein family HMM PF05139
YP_441182.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_441183.1	identified by match to protein family HMM PF00156
YP_441185.1	identified by match to protein family HMM PF05947
YP_441188.1	identified by match to protein family HMM PF01804
YP_441189.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_441190.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_441192.1	identified by match to protein family HMM PF00072
YP_441196.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_441197.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_441198.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_441199.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_441200.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_441202.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_441203.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_441204.1	identified by match to protein family HMM PF03741
YP_441205.1	identified by match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_441206.1	identified by match to protein family HMM PF04932
YP_441208.1	identified by match to protein family HMM TIGR01352
YP_441209.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_441210.1	identified by match to protein family HMM PF01435
YP_441214.1	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195
YP_441216.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_441217.1	identified by match to protein family HMM PF03591
YP_441218.1	identified by match to protein family HMM PF06063
YP_441219.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_441220.3	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_441221.1	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis
YP_441222.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_441223.1	identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_441224.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_441225.1	identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057
YP_441228.1	identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666
YP_441229.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_441230.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_441231.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037
YP_441233.1	identified by match to protein family HMM PF04248
YP_441235.1	identified by match to protein family HMM PF00440
YP_441236.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_441237.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915
YP_441238.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_441239.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_441240.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782
YP_441241.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_441242.1	identified by match to protein family HMM PF00107
YP_441243.1	identified by match to protein family HMM PF00756
YP_441244.1	identified by match to protein family HMM PF00950
YP_441245.1	identified by match to protein family HMM PF00005
YP_441246.1	identified by match to protein family HMM PF01297
YP_441247.1	identified by match to protein family HMM PF01475
YP_441248.1	Converts D-sorbitol to L-sorbose
YP_441249.1	identified by match to protein family HMM PF00294
YP_441250.1	identified by match to protein family HMM PF08013
YP_441251.1	identified by match to protein family HMM PF01547
YP_441252.1	identified by match to protein family HMM PF00528
YP_441253.1	identified by match to protein family HMM PF00528
YP_441254.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_441255.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459
YP_441256.1	identified by match to protein family HMM TIGR01409
YP_441257.1	identified by match to protein family HMM PF04198
YP_441258.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312
YP_441259.1	identified by match to protein family HMM PF01232; match to protein family HMM PF08125
YP_441260.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_441261.1	catalyzes the formation of benzaldehyde from benzoylformate
YP_441262.1	identified by match to protein family HMM PF00171
YP_441263.1	identified by match to protein family HMM PF02558; match to protein family HMM TIGR00745
YP_441264.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_441265.1	identified by match to protein family HMM PF03301
YP_441266.1	identified by match to protein family HMM TIGR01814
YP_441267.1	identified by match to protein family HMM PF04199
YP_441268.1	identified by match to protein family HMM PF01037
YP_441269.1	identified by match to protein family HMM PF01613
YP_441270.1	identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401
YP_441271.1	identified by match to protein family HMM PF01904
YP_441272.1	identified by match to protein family HMM PF02353
YP_441273.3	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate
YP_441274.1	identified by match to protein family HMM PF00899
YP_441275.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_441276.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_441277.1	identified by match to protein family HMM PF00892
YP_441278.1	identified by match to protein family HMM PF01520
YP_441279.1	identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_441280.1	identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276
YP_441281.1	identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589
YP_441282.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_441283.1	identified by match to protein family HMM PF00501
YP_441284.1	identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011
YP_441285.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_441286.1	nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_441287.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_441288.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_441290.1	identified by match to protein family HMM PF01610
YP_441291.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_441292.1	identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695
YP_441294.1	identified by match to protein family HMM PF00106
YP_441295.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_441296.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_441297.1	identified by match to protein family HMM PF03966
YP_441298.1	Transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_441299.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_441300.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_441302.1	identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937
YP_441303.1	identified by match to protein family HMM PF00027
YP_441304.1	identified by match to protein family HMM PF06127
YP_441305.1	catalyzes the formation of 2-dehydropantoate from (R)-pantoate
YP_441307.1	identified by match to protein family HMM PF00563
YP_441308.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_441309.1	identified by match to protein family HMM PF00376
YP_441310.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_441311.1	identified by match to protein family HMM PF00248
YP_441312.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_441313.1	identified by match to protein family HMM PF02643
YP_441314.1	identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093
YP_441315.1	Converts isocitrate to alpha ketoglutarate
YP_441316.1	identified by match to protein family HMM PF07731; match to protein family HMM PF07732
YP_441317.1	identified by match to protein family HMM PF00313
YP_441318.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_441319.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM TIGR02639
YP_441320.1	identified by match to protein family HMM PF00324
YP_441322.1	identified by match to protein family HMM PF03988
YP_441323.1	catalyzes the formation of dUMP from dUTP
YP_441324.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_441325.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_441326.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_441327.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_441328.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_441329.1	identified by match to protein family HMM PF01189
YP_441330.1	identified by match to protein family HMM PF00924
YP_441331.1	identified by match to protein family HMM PF00487
YP_441332.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_441333.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_441334.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_441335.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_441336.1	required for 70S ribosome assembly
YP_441337.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_441338.1	identified by match to protein family HMM PF00254
YP_441339.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_441341.1	identified by match to protein family HMM PF02653
YP_441342.1	identified by match to protein family HMM PF02653
YP_441343.1	identified by match to protein family HMM PF00005
YP_441344.1	identified by match to protein family HMM PF00005
YP_441346.1	identified by match to protein family HMM PF00583
YP_441347.3	DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_441348.1	catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose
YP_441351.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_441352.1	identified by match to protein family HMM PF04234
YP_441355.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_441356.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_441357.1	identified by match to protein family HMM PF00561
YP_441358.1	identified by match to protein family HMM PF03473
YP_441359.1	identified by match to protein family HMM PF00701
YP_441360.1	identified by match to protein family HMM PF00596
YP_441361.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_441363.1	identified by match to protein family HMM PF02899
YP_441366.1	identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786
YP_441367.1	identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787; match to protein family HMM TIGR01409
YP_441368.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_441369.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_441370.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460
YP_441371.1	identified by match to protein family HMM PF06073
YP_441372.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_441373.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_441374.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR02034
YP_441375.1	catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1
YP_441376.1	identified by match to protein family HMM PF01903
YP_441377.1	identified by match to protein family HMM PF03739
YP_441378.1	identified by match to protein family HMM PF03739
YP_441379.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_441380.1	binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB
YP_441382.1	identified by match to protein family HMM PF00034
YP_441383.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_441384.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_441385.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_441386.1	identified by match to protein family HMM PF04402
YP_441387.1	identified by match to protein family HMM PF04543
YP_441388.1	identified by match to protein family HMM PF05164
YP_441390.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715
YP_441391.1	identified by match to protein family HMM PF01032
YP_441392.1	identified by match to protein family HMM PF00005
YP_441393.1	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole
YP_441394.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_441395.1	identified by match to protein family HMM PF00300
YP_441396.1	identified by match to protein family HMM PF01497
YP_441397.1	cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase
YP_441398.1	CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
YP_441399.1	identified by match to protein family HMM PF02283
YP_441400.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_441401.1	identified by match to protein family HMM PF07681
YP_441402.1	identified by match to protein family HMM PF01656
YP_441403.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_441404.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_441405.1	identified by match to protein family HMM PF02616
YP_441407.1	identified by match to protein family HMM PF01103
YP_441408.1	identified by match to protein family HMM PF04357
YP_441411.1	identified by match to protein family HMM PF00891
YP_441412.3	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_441413.1	identified by match to protein family HMM PF00691
YP_441414.1	identified by match to protein family HMM PF01656; match to protein family HMM PF01883
YP_441415.1	identified by match to protein family HMM PF00080
YP_441416.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_441417.1	identified by match to protein family HMM PF01276; match to protein family HMM PF03711
YP_441419.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_441420.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_441421.1	identified by match to protein family HMM PF00577
YP_441423.1	identified by match to protein family HMM PF05229
YP_441424.1	identified by match to protein family HMM PF05229
YP_441426.1	identified by match to protein family HMM PF01209
YP_441427.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_441428.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_441429.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis
YP_441430.1	identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM PF07721
YP_441431.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_441432.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_441433.1	identified by match to protein family HMM PF00171
YP_441434.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_441435.1	identified by match to protein family HMM PF01541
YP_441436.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_441437.1	identified by match to protein family HMM PF04339
YP_441438.1	NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_441439.1	identified by match to protein family HMM PF00543
YP_441441.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_441442.1	identified by match to protein family HMM PF00583
YP_441443.1	identified by match to protein family HMM PF00005
YP_441444.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_441445.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_441446.1	identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096
YP_441447.1	identified by match to protein family HMM PF02678; match to protein family HMM PF07883
YP_441449.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_441450.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_441452.1	identified by match to protein family HMM PF00528
YP_441453.1	identified by match to protein family HMM PF00005
YP_441456.1	identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400
YP_441459.1	identified by match to protein family HMM PF07690
YP_441460.1	identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481
YP_441463.1	serine protease inhibitor, inhibits trypsin and other proteases
YP_441464.1	identified by match to protein family HMM PF00768
YP_441472.1	identified by match to protein family HMM PF01610
YP_441477.1	identified by match to protein family HMM PF01609
YP_441482.1	identified by match to protein family HMM PF00872
YP_441483.1	identified by match to protein family HMM PF00589
YP_441487.1	identified by match to protein family HMM PF03412
YP_441490.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199
YP_441491.1	identified by match to protein family HMM PF00301
YP_441493.1	identified by match to protein family HMM PF00005
YP_441494.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_441495.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_441497.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_441498.1	identified by match to protein family HMM PF05232
YP_441500.1	identified by match to protein family HMM PF00850
YP_441501.1	identified by match to protein family HMM PF02417
YP_441502.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_441503.1	identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_441504.1	identified by match to protein family HMM PF01042
YP_441505.1	identified by match to protein family HMM PF00155
YP_441506.1	identified by match to protein family HMM PF00892
YP_441508.1	identified by match to protein family HMM PF00392
YP_441509.1	molecular chaperone
YP_441510.1	identified by match to protein family HMM PF04345
YP_441514.1	identified by match to protein family HMM PF00474
YP_441515.1	identified by match to protein family HMM PF00903
YP_441516.1	identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874
YP_441517.1	identified by match to protein family HMM PF03594; match to protein family HMM TIGR00843
YP_441519.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07728
YP_441520.1	identified by match to protein family HMM PF00034
YP_441521.1	identified by match to protein family HMM PF00034
YP_441523.1	identified by match to protein family HMM PF00892
YP_441524.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083
YP_441525.1	Involved in the electron transport chain
YP_441526.1	identified by match to protein family HMM PF00440
YP_441527.1	identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849
YP_441528.1	identified by match to protein family HMM PF00723
YP_441530.1	identified by match to protein family HMM PF01580
YP_441531.1	identified by match to protein family HMM PF03724
YP_441533.1	non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis
YP_441535.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_441536.1	this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu
YP_441537.1	identified by match to protein family HMM PF00581
YP_441538.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_441539.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203
YP_441540.1	identified by match to protein family HMM PF00534
YP_441541.1	identified by match to protein family HMM PF01075
YP_441543.1	identified by match to protein family HMM PF00534
YP_441544.1	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02201
YP_441545.1	identified by match to protein family HMM PF00535
YP_441548.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_441550.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_441551.1	identified by match to protein family HMM PF04542
YP_441552.1	identified by match to protein family HMM PF03466
YP_441553.1	identified by match to protein family HMM PF00126
YP_441561.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_441562.1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
YP_441563.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_441564.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_441565.1	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090
YP_441566.1	catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP
YP_441567.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_441568.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_441569.1	identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033
YP_441570.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_441571.1	identified by match to protein family HMM PF00106
YP_441572.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_441573.1	identified by match to protein family HMM PF00107
YP_441575.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_441576.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_441577.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex
YP_441578.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702
YP_441579.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_441580.1	identified by match to protein family HMM PF03891
YP_441581.1	identified by match to protein family HMM PF00893
YP_441583.1	identified by match to protein family HMM PF02687
YP_441584.1	identified by match to protein family HMM PF01152
YP_441585.1	identified by match to protein family HMM PF06041
YP_441586.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_441587.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_441589.1	Converts glucose to D-glucono-1,5 lactone
YP_441590.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_441591.1	identified by match to protein family HMM PF00440
YP_441592.1	identified by match to protein family HMM PF01219
YP_441593.1	identified by match to protein family HMM PF00534
YP_441594.1	identified by match to protein family HMM PF00149
YP_441595.1	identified by match to protein family HMM PF06271
YP_441598.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_441599.1	acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate
YP_441600.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_441601.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_441602.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_441603.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473
YP_441604.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_441605.1	identified by match to protein family HMM PF00916
YP_441606.1	identified by match to protein family HMM PF00484
YP_441608.1	identified by match to protein family HMM PF01094
YP_441609.2	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_441610.1	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726
YP_441611.1	identified by match to protein family HMM PF00107
YP_441612.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_441613.1	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810
YP_441614.1	Catalyzes the transfer of electrons from NADH to quinone
YP_441615.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_441616.1	Catalyzes the transfer of electrons from NADH to quinone
YP_441617.1	Catalyzes the transfer of electrons from NADH to quinone
YP_441618.1	Catalyzes the transfer of electrons from NADH to quinone
YP_441619.1	identified by match to protein family HMM PF01512; match to protein family HMM TIGR01959
YP_441620.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_441621.1	Catalyzes the transfer of electrons from NADH to quinone
YP_441622.1	Catalyzes the transfer of electrons from NADH to quinone
YP_441623.1	Catalyzes the transfer of electrons from NADH to quinone
YP_441624.1	Catalyzes the transfer of electrons from NADH to quinone
YP_441625.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_441626.1	Catalyzes the transfer of electrons from NADH to quinone
YP_441627.1	Catalyzes the transfer of electrons from NADH to quinone
YP_441629.1	identified by match to protein family HMM PF00293
YP_441630.1	identified by match to protein family HMM PF06676
YP_441631.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_441632.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_441633.1	identified by match to protein family HMM PF01575
YP_441634.1	identified by match to protein family HMM PF01575
YP_441636.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_441637.1	identified by match to protein family HMM PF01636
YP_441638.1	identified by match to protein family HMM PF00300
YP_441639.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_441640.1	identified by match to protein family HMM PF02798
YP_441641.1	catalyzes the transfer of an amino moiety
YP_441643.1	identified by match to protein family HMM PF03883
YP_441644.1	identified by match to protein family HMM PF00246
YP_441647.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_441649.1	identified by match to protein family HMM PF01527
YP_441650.1	identified by match to protein family HMM PF05717
YP_441651.1	identified by match to protein family HMM PF00872
YP_441653.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_441654.1	activates fatty acids by binding to coenzyme A
YP_441655.1	identified by match to protein family HMM PF00267
YP_441657.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_441658.1	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_441659.1	identified by match to protein family HMM TIGR02209
YP_441660.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_441661.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_441662.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143
YP_441663.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_441664.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_441665.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614
YP_441666.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_441667.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_441668.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_441669.1	identified by match to protein family HMM PF03799
YP_441670.1	identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174
YP_441671.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_441672.1	identified by match to protein family HMM PF00578
YP_441673.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_441675.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_441676.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_441677.1	identified by match to protein family HMM PF05673
YP_441678.1	identified by match to protein family HMM PF00293
YP_441679.1	identified by match to protein family HMM PF03884
YP_441680.1	identified by match to protein family HMM PF07072
YP_441681.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_441682.1	identified by match to protein family HMM PF01478; match to protein family HMM PF06750
YP_441683.1	identified by match to protein family HMM PF00482
YP_441684.1	identified by match to protein family HMM PF00437
YP_441685.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_441686.1	identified by match to protein family HMM PF00348
YP_441687.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_441688.1	involved in the peptidyltransferase reaction during translation
YP_441689.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_441690.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_441692.1	hydrolyzes diadenosine polyphosphate
YP_441693.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_441694.1	identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427
YP_441695.1	Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively
YP_441696.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_441697.1	identified by match to protein family HMM PF01578
YP_441699.1	identified by match to protein family HMM PF01510
YP_441700.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_441701.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_441705.1	identified by match to protein family HMM PF00294
YP_441706.1	identified by match to protein family HMM PF00578
YP_441707.1	identified by match to protein family HMM TIGR02098
YP_441708.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_441709.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_441710.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_441711.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_441715.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01081
YP_441716.1	identified by match to protein family HMM PF05728
YP_441717.1	identified by match to protein family HMM PF00773
YP_441718.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_441719.1	glycosyltransferase; polymerizes glycan strands in the peptidoglycan
YP_441722.1	identified by match to protein family HMM PF01614
YP_441723.1	identified by match to protein family HMM PF05035
YP_441724.3	catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism
YP_441725.1	identified by match to protein family HMM PF00106
YP_441726.1	identified by match to protein family HMM PF00532; match to protein family HMM TIGR01409
YP_441727.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_441728.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_441729.1	identified by match to protein family HMM PF00106
YP_441730.1	identified by match to protein family HMM PF01263
YP_441731.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_441733.1	identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199
YP_441734.1	identified by match to protein family HMM PF04608
YP_441735.1	catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP
YP_441736.1	NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate
YP_441737.1	identified by match to protein family HMM PF00545
YP_441738.1	identified by match to protein family HMM PF01337
YP_441739.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_441740.1	identified by match to protein family HMM PF00903
YP_441741.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_441742.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_441743.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_441744.1	identified by match to protein family HMM PF07690
YP_441745.1	catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide
YP_441746.1	identified by match to protein family HMM PF00484
YP_441747.2	controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source
YP_441749.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_441750.1	involved in the transport of C4-dicarboxylates across the membrane
YP_441751.1	catalyzes the formation of S-ureidoglycolate and urea from allantoate
YP_441752.1	catalyzes the formation of glyoxylate from (S)-ureidoglycolate
YP_441753.1	identified by match to protein family HMM PF01475
YP_441754.1	identified by match to protein family HMM PF04355
YP_441755.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_441756.1	identified by match to protein family HMM PF01618
YP_441757.1	identified by match to protein family HMM PF02472
YP_441758.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_441760.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_441761.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_441762.1	identified by match to protein family HMM PF03653
YP_441763.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_441764.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_441765.1	identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182
YP_441766.1	identified by match to protein family HMM PF02447; match to protein family HMM TIGR00791
YP_441767.1	identified by match to protein family HMM TIGR01313
YP_441768.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_441769.1	identified by match to protein family HMM PF07690
YP_441770.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_441771.1	identified by match to protein family HMM PF00208; match to protein family HMM PF02812
YP_441772.1	identified by match to protein family HMM PF00497
YP_441773.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_441774.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_441775.1	identified by match to protein family HMM PF00005
YP_441776.1	identified by match to protein family HMM PF00310
YP_441777.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_441779.1	identified by match to protein family HMM PF02566
YP_441780.2	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_441781.1	forms a direct contact with the tRNA during translation
YP_441782.1	essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors
YP_441783.1	identified by match to protein family HMM PF00165
YP_441784.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_441785.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_441786.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_441787.2	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_441789.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_441790.1	identified by match to protein family HMM PF00300
YP_441794.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_441795.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_441796.2	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_441797.1	involved in de novo purine biosynthesis
YP_441798.1	identified by match to protein family HMM PF02954; match to protein family HMM TIGR01199
YP_441799.1	identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737
YP_441800.1	identified by match to protein family HMM PF01360; match to protein family HMM TIGR01988
YP_441801.1	identified by match to protein family HMM PF00557; match to protein family HMM PF05195
YP_441802.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_441803.1	identified by match to protein family HMM PF01645
YP_441804.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_441805.1	identified by match to protein family HMM PF00293
YP_441806.1	identified by match to protein family HMM PF01262; match to protein family HMM PF05222
YP_441808.1	identified by match to protein family HMM PF02233
YP_441812.1	identified by match to protein family HMM PF01170; match to protein family HMM PF02926
YP_441814.1	identified by match to protein family HMM PF03886
YP_441816.1	identified by match to protein family HMM PF04403
YP_441817.1	identified by match to protein family HMM PF04403
YP_441818.1	identified by match to protein family HMM PF01292
YP_441819.1	identified by match to protein family HMM PF04264
YP_441820.1	identified by match to protein family HMM PF04264
YP_441821.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_441822.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_441823.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_441824.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_441825.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_441826.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_441827.1	catalyzes branch migration in Holliday junction intermediates
YP_441828.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_441829.1	identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198
YP_441831.1	identified by match to protein family HMM PF00210
YP_441833.1	catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway
YP_441834.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_441835.1	identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044
YP_441836.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02754
YP_441837.1	identified by match to protein family HMM PF01565
YP_441838.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_441839.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_441840.1	identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636
YP_441841.1	identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_441842.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_441843.1	identified by match to protein family HMM PF01523
YP_441844.1	identified by match to protein family HMM PF00795
YP_441845.1	identified by match to protein family HMM TIGR02099
YP_441846.1	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme
YP_441847.1	identified by match to protein family HMM TIGR00634
YP_441848.1	catalyzes the phosphorylation of NAD to NADP
YP_441849.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_441850.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_441851.1	identified by match to protein family HMM PF01479
YP_441853.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_441855.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_441856.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_441857.1	identified by match to protein family HMM PF00425
YP_441858.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_441859.1	identified by match to protein family HMM PF01712
YP_441860.1	identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498
YP_441861.1	identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942
YP_441862.1	identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_441864.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_441865.1	identified by match to protein family HMM TIGR02246
YP_441866.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_441867.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_441868.1	identified by match to protein family HMM PF00597
YP_441869.1	identified by match to protein family HMM PF00924
YP_441870.1	identified by match to protein family HMM PF00310
YP_441871.1	identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479
YP_441872.1	identified by match to protein family HMM PF05159
YP_441873.1	identified by match to protein family HMM PF00534
YP_441874.1	identified by match to protein family HMM PF02563
YP_441875.1	identified by match to protein family HMM TIGR01444
YP_441877.1	identified by match to protein family HMM PF00534
YP_441878.1	identified by match to protein family HMM TIGR01472
YP_441879.1	identified by match to protein family HMM PF01370; match to protein family HMM PF07993
YP_441880.1	identified by match to protein family HMM PF00534
YP_441881.1	identified by match to protein family HMM PF00534
YP_441882.1	identified by match to protein family HMM PF00005
YP_441883.1	identified by match to protein family HMM PF01061
YP_441884.1	identified by match to protein family HMM PF02706
YP_441885.1	identified by match to protein family HMM PF05159
YP_441886.1	identified by match to protein family HMM PF00106
YP_441888.1	identified by match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801
YP_441889.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_441890.1	identified by match to protein family HMM PF00155
YP_441894.1	identified by match to protein family HMM PF02012
YP_441896.1	identified by match to protein family HMM PF01569
YP_441897.1	identified by match to protein family HMM PF00165
YP_441898.1	identified by match to protein family HMM PF02397
YP_441899.1	identified by match to protein family HMM PF02563
YP_441900.1	identified by match to protein family HMM PF01451
YP_441901.1	identified by match to protein family HMM PF02706; match to protein family HMM TIGR01005
YP_441903.1	identified by match to protein family HMM PF05159
YP_441904.1	identified by match to protein family HMM PF00132
YP_441906.1	identified by match to protein family HMM PF00534
YP_441907.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_441908.1	identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670
YP_441909.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393
YP_441910.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_441912.1	identified by match to protein family HMM PF00487
YP_441913.1	identified by match to protein family HMM PF01619
YP_441914.1	identified by match to protein family HMM PF00266
YP_441915.1	identified by match to protein family HMM PF00892
YP_441918.1	identified by match to protein family HMM PF00691
YP_441919.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_441920.1	identified by match to protein family HMM PF06519
YP_441921.1	identified by match to protein family HMM PF02472
YP_441922.1	identified by match to protein family HMM PF01618
YP_441923.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051
YP_441924.1	identified by match to protein family HMM PF00106
YP_441925.2	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_441926.1	identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244
YP_441927.1	identified by match to protein family HMM TIGR02532
YP_441928.1	identified by match to protein family HMM TIGR02532
YP_441930.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_441933.1	identified by match to protein family HMM PF05957
YP_441934.1	identified by match to protein family HMM PF00578
YP_441936.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_441937.1	identified by match to protein family HMM PF01614
YP_441938.1	identified by match to protein family HMM PF04828
YP_441939.1	identified by match to protein family HMM PF00563
YP_441940.1	identified by match to protein family HMM PF00753
YP_441941.1	identified by match to protein family HMM PF01360; match to protein family HMM PF01494; match to protein family HMM PF07992
YP_441942.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_441943.1	An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine
YP_441944.1	identified by match to protein family HMM PF01557; match to protein family HMM TIGR01266
YP_441945.1	identified by match to protein family HMM PF07690
YP_441946.1	identified by match to protein family HMM PF07690
YP_441947.1	identified by match to protein family HMM PF00881; match to protein family HMM TIGR02476
YP_441948.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_441949.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_441950.1	identified by match to protein family HMM PF00266
YP_441951.1	identified by match to protein family HMM PF00165
YP_441952.1	identified by match to protein family HMM PF00892
YP_441953.1	identified by match to protein family HMM PF07690
YP_441954.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450
YP_441955.1	identified by match to protein family HMM PF01315; match to protein family HMM PF02738
YP_441956.1	identified by match to protein family HMM PF01547
YP_441958.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783
YP_441959.1	identified by match to protein family HMM PF00005
YP_441960.1	identified by match to protein family HMM PF01497
YP_441961.1	identified by match to protein family HMM PF01032
YP_441962.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_441963.1	identified by match to protein family HMM PF01323
YP_441965.1	identified by match to protein family HMM PF04972
YP_441967.1	identified by match to protein family HMM PF00450
YP_441968.1	identified by match to protein family HMM PF01925
YP_441970.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_441971.1	identified by match to protein family HMM PF03009
YP_441972.1	identified by match to protein family HMM PF01810
YP_441973.1	identified by match to protein family HMM PF00583
YP_441974.1	identified by match to protein family HMM PF01381
YP_441975.1	identified by match to protein family HMM PF00753
YP_441976.1	identified by match to protein family HMM PF01638
YP_441979.1	identified by match to protein family HMM PF03922
YP_441982.1	identified by match to protein family HMM PF00107
YP_441983.1	identified by match to protein family HMM PF01638
YP_441985.1	identified by match to protein family HMM PF03050
YP_441986.1	identified by match to protein family HMM PF05717
YP_441987.1	identified by match to protein family HMM PF01527
YP_441989.1	identified by match to protein family HMM PF00580
YP_441990.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_441991.1	identified by match to protein family HMM PF01527
YP_441992.1	identified by match to protein family HMM PF05717
YP_441993.1	identified by match to protein family HMM PF03050
YP_441994.1	identified by match to protein family HMM PF05717
YP_441995.1	identified by match to protein family HMM PF03050
YP_441996.1	identified by match to protein family HMM PF03050
YP_441997.1	identified by match to protein family HMM PF05717
YP_441998.1	identified by match to protein family HMM PF01527
YP_441999.1	identified by match to protein family HMM PF00665
YP_442000.1	identified by match to protein family HMM PF01527
YP_442003.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_442004.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_442006.1	identified by match to protein family HMM PF00301
YP_442008.1	identified by match to protein family HMM PF02622
YP_442009.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_442010.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_442011.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_442012.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_442013.1	identified by match to protein family HMM PF01553
YP_442014.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_442015.1	identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01181
YP_442016.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207
YP_442017.1	identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221
YP_442018.1	identified by match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214
YP_442019.1	identified by match to protein family HMM PF01061
YP_442020.1	identified by match to protein family HMM PF00005
YP_442021.1	identified by match to protein family HMM PF01757
YP_442022.1	identified by match to protein family HMM PF01370; match to protein family HMM PF07993
YP_442024.1	identified by match to protein family HMM PF00535
YP_442025.1	identified by match to protein family HMM PF00535
YP_442026.1	identified by match to protein family HMM PF00535
YP_442027.1	identified by match to protein family HMM PF07993
YP_442028.1	identified by match to protein family HMM PF00953
YP_442029.1	identified by match to protein family HMM PF02719; match to protein family HMM PF07993
YP_442030.1	identified by match to protein family HMM PF00953
YP_442031.1	identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01179
YP_442032.1	identified by match to protein family HMM PF00534
YP_442033.1	identified by match to protein family HMM PF00535
YP_442035.1	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_442036.1	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193
YP_442038.1	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A
YP_442039.1	identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101
YP_442040.1	identified by match to protein family HMM PF01730
YP_442041.1	involved in the assembly of the urease metallocenter; possible nickel donor
YP_442042.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_442043.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active
YP_442044.1	UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter
YP_442045.1	identified by match to protein family HMM PF01774
YP_442046.1	identified by match to protein family HMM PF00005
YP_442047.1	identified by match to protein family HMM PF00005
YP_442048.1	identified by match to protein family HMM PF02653
YP_442049.1	identified by match to protein family HMM PF02653
YP_442050.1	identified by match to protein family HMM TIGR01409
YP_442051.2	catalyze the conversion of beta amino acids to the corresponding beta keto acid with pyruvate as the amine acceptor
YP_442052.1	identified by match to protein family HMM PF00581
YP_442053.1	identified by match to protein family HMM PF01135
YP_442055.2	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_442056.1	identified by match to protein family HMM PF03692
YP_442058.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_442059.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_442061.1	identified by match to protein family HMM PF00107
YP_442062.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_442063.1	identified by match to protein family HMM PF02146
YP_442065.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_442066.1	identified by match to protein family HMM PF02641
YP_442067.1	identified by match to protein family HMM PF02325
YP_442069.2	catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine
YP_442070.1	identified by match to protein family HMM PF01810
YP_442071.1	identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148
YP_442072.1	identified by match to protein family HMM PF01464
YP_442073.1	identified by match to protein family HMM PF00155
YP_442074.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_442075.2	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_442076.2	bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis
YP_442078.1	identified by match to protein family HMM PF00271
YP_442080.1	identified by match to protein family HMM PF01610
YP_442081.1	identified by match to protein family HMM PF00665
YP_442082.1	identified by match to protein family HMM PF01527
YP_442084.1	identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550
YP_442085.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_442086.1	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326
YP_442087.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_442090.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_442091.1	identified by match to protein family HMM PF00005
YP_442092.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_442093.1	identified by match to protein family HMM PF00497
YP_442094.1	glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate
YP_442095.1	identified by match to protein family HMM TIGR01198
YP_442096.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_442097.1	identified by match to protein family HMM PF01547
YP_442098.1	identified by match to protein family HMM PF00528
YP_442099.1	identified by match to protein family HMM PF00528
YP_442100.1	identified by match to protein family HMM PF00005
YP_442102.1	identified by match to protein family HMM PF03458
YP_442103.1	identified by match to protein family HMM PF01713
YP_442104.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_442105.1	identified by match to protein family HMM PF01580
YP_442106.1	participates with LolB in the incorporation of lipoprotein into the outer membrane
YP_442107.1	identified by match to protein family HMM PF00004
YP_442109.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_442110.1	identified by match to protein family HMM PF00583
YP_442111.1	blocks the formation of polar Z-ring septums
YP_442112.1	identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968
YP_442113.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_442115.1	identified by match to protein family HMM PF00654
YP_442116.1	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193
YP_442118.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_442119.1	identified by match to protein family HMM TIGR01352
YP_442120.1	identified by match to protein family HMM PF04828
YP_442123.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_442124.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_442125.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_442126.1	identified by match to protein family HMM PF03755; match to protein family HMM TIGR00255
YP_442127.1	Essential for recycling GMP and indirectly, cGMP
YP_442128.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_442129.1	identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_442130.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_442131.1	identified by match to protein family HMM PF00267
YP_442133.1	identified by match to protein family HMM PF00313
YP_442134.1	identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM TIGR00573
YP_442135.1	catalyzes the interconversion of chorismate to prephenate
YP_442137.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715
YP_442138.1	identified by match to protein family HMM PF02012
YP_442140.1	identified by match to protein family HMM PF04226
YP_442142.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_442143.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_442144.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_442146.1	identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414
YP_442147.1	identified by match to protein family HMM PF01169
YP_442148.1	Catalyzes the deamination of guanine
YP_442149.1	identified by match to protein family HMM PF00860
YP_442150.1	catalyzes the formation of inosine from adenosine
YP_442151.1	identified by match to protein family HMM PF02625
YP_442152.1	disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein
YP_442153.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_442155.1	identified by match to protein family HMM PF00117; match to protein family HMM PF07722
YP_442156.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_442157.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM PF07721
YP_442158.1	identified by match to protein family HMM PF01360; match to protein family HMM PF01494
YP_442160.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591
YP_442161.1	identified by match to protein family HMM PF01512
YP_442163.1	identified by match to protein family HMM PF00126
YP_442166.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_442167.1	Involved in ubiquinone biosynthesis
YP_442168.1	identified by match to protein family HMM PF00691
YP_442169.1	negatively supercoils closed circular double-stranded DNA
YP_442171.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_442172.1	identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807
YP_442173.2	fusion of tyrA/aroA
YP_442174.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_442175.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_442176.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_442178.1	identified by match to protein family HMM PF00515
YP_442179.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721
YP_442180.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR02198
YP_442181.1	identified by match to protein family HMM PF07993; match to protein family HMM TIGR02197
YP_442183.3	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide
YP_442184.1	identified by match to protein family HMM TIGR02282
YP_442185.1	identified by match to protein family HMM PF00850
YP_442186.1	identified by match to protein family HMM PF00561
YP_442187.1	part of the metNIQ transport system for methionine
YP_442188.1	identified by match to protein family HMM PF00528
YP_442189.1	identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363; match to protein family HMM TIGR01409
YP_442190.1	identified by match to protein family HMM PF01012
YP_442191.1	identified by match to protein family HMM PF00766
YP_442192.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_442193.1	catalyzes the oxidative deamination of D-amino acids
YP_442194.1	identified by match to protein family HMM PF01037
YP_442195.1	identified by match to protein family HMM PF04055
YP_442198.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_442199.1	Essential for efficient processing of 16S rRNA
YP_442200.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_442201.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_442202.1	identified by match to protein family HMM PF00293
YP_442203.1	catalyzes the formation of adenosylcobinamide-phosphate from adenosylcobyric acid
YP_442205.2	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_442206.1	identified by match to protein family HMM PF01435
YP_442207.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_442208.1	forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis
YP_442209.1	identified by match to protein family HMM PF04751
YP_442210.1	identified by match to protein family HMM PF01523
YP_442211.1	identified by match to protein family HMM PF00186
YP_442212.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199
YP_442216.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199
YP_442217.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_442219.1	identified by match to protein family HMM PF01022
YP_442221.1	identified by match to protein family HMM PF03061
YP_442222.2	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_442223.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_442227.1	identified by match to protein family HMM PF06063
YP_442228.1	identified by match to protein family HMM PF03591
YP_442229.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_442230.1	identified by match to protein family HMM PF05981
YP_442231.1	identified by match to protein family HMM PF00037
YP_442232.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_442233.1	identified by match to protein family HMM PF02589
YP_442235.2	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_442236.1	identified by match to protein family HMM PF02646
YP_442237.1	identified by match to protein family HMM PF00583
YP_442239.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_442240.1	in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis
YP_442241.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_442242.1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
YP_442243.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_442244.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_442245.1	identified by match to protein family HMM PF00355
YP_442246.1	identified by match to protein family HMM PF01343
YP_442247.1	identified by match to protein family HMM PF00590
YP_442248.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_442249.1	identified by match to protein family HMM PF02620
YP_442250.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_442251.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_442252.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_442253.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_442254.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_442255.1	carries the fatty acid chain in fatty acid biosynthesis
YP_442256.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_442258.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_442259.1	identified by match to protein family HMM PF03872
YP_442261.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037
YP_442263.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_442264.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_442265.2	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_442266.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_442267.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_442268.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_442269.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_442270.1	hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides
YP_442271.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199
YP_442272.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_442274.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_442275.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_442276.1	identified by match to protein family HMM PF00872
YP_442278.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_442279.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_442280.1	identified by match to protein family HMM PF00583
YP_442282.1	identified by match to protein family HMM PF04314
YP_442283.1	identified by match to protein family HMM PF02630
YP_442284.1	identified by match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484
YP_442285.1	identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400
YP_442286.1	identified by match to protein family HMM PF01548; match to protein family HMM PF02371
YP_442287.1	identified by match to protein family HMM PF01548; match to protein family HMM PF02371
YP_442288.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_442289.1	identified by match to protein family HMM PF00534
YP_442293.1	identified by match to protein family HMM PF01094
YP_442294.1	identified by match to protein family HMM PF04185; match to protein family HMM PF05506; match to protein family HMM TIGR01409
YP_442295.1	identified by match to protein family HMM TIGR00687
YP_442296.1	identified by match to protein family HMM PF00561
YP_442297.1	identified by match to protein family HMM PF00296
YP_442298.1	identified by match to protein family HMM PF00535
YP_442299.1	identified by match to protein family HMM PF04055
YP_442300.1	identified by match to protein family HMM PF04794
YP_442303.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_442304.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_442305.1	identified by match to protein family HMM PF00005
YP_442306.1	identified by match to protein family HMM PF00165
YP_442307.2	DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate
YP_442309.1	identified by match to protein family HMM PF04958
YP_442310.1	a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH
YP_442311.1	catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation
YP_442312.1	catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism
YP_442313.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_442314.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_442315.1	identified by match to protein family HMM PF00497
YP_442316.1	identified by match to protein family HMM PF00487
YP_442317.1	identified by match to protein family HMM PF03626
YP_442319.1	identified by match to protein family HMM PF00115
YP_442320.1	identified by match to protein family HMM PF06481; match to protein family HMM TIGR01433
YP_442321.1	identified by match to protein family HMM TIGR02481
YP_442322.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_442324.1	identified by match to protein family HMM PF01883
YP_442325.1	identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994
YP_442326.1	identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979
YP_442327.1	identified by match to protein family HMM PF01458
YP_442328.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978
YP_442329.1	with SufCD activates cysteine desulfurase SufS
YP_442330.1	identified by match to protein family HMM PF05940
YP_442331.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_442332.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_442333.1	identified by match to protein family HMM PF00027
YP_442335.1	identified by match to protein family HMM PF03060
YP_442336.1	identified by match to protein family HMM PF01136
YP_442337.1	identified by match to protein family HMM PF01136
YP_442340.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495
YP_442341.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_442342.1	identified by match to protein family HMM PF05940
YP_442344.1	identified by match to protein family HMM PF01883
YP_442346.1	identified by match to protein family HMM PF00487
YP_442347.1	identified by match to protein family HMM PF00875; match to protein family HMM PF03441
YP_442348.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_442349.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472
YP_442351.1	identified by match to protein family HMM PF01648
YP_442352.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_442353.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018
YP_442354.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_442355.1	identified by match to protein family HMM PF05962
YP_442356.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_442357.1	catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate
YP_442358.1	identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017
YP_442359.1	identified by match to protein family HMM PF00117; match to protein family HMM PF07722
YP_442360.1	identified by match to protein family HMM PF00120
YP_442361.1	identified by match to protein family HMM PF00202
YP_442363.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_442364.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_442365.1	identified by match to protein family HMM PF02515
YP_442366.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_442367.1	identified by match to protein family HMM PF04362
YP_442368.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_442369.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967
YP_442373.1	identified by match to protein family HMM PF00994
YP_442375.1	identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653
YP_442376.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_442377.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR01818
YP_442378.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_442379.1	identified by match to protein family HMM TIGR01444
YP_442380.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_442381.1	identified by match to protein family HMM PF00672; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730
YP_442382.1	identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351
YP_442383.1	identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684
YP_442384.1	identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660
YP_442385.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01580
YP_442386.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886
YP_442387.1	identified by match to protein family HMM PF07690
YP_442388.1	identified by match to protein family HMM PF01757
YP_442389.2	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_442390.1	identified by match to protein family HMM PF01432
YP_442391.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_442392.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_442393.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_442394.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_442395.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01348
YP_442396.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350
YP_442397.1	identified by match to protein family HMM TIGR01841
YP_442398.1	identified by match to protein family HMM PF00768
YP_442399.1	identified by match to protein family HMM PF01614
YP_442400.1	identified by match to protein family HMM PF02754
YP_442401.1	identified by match to protein family HMM PF00037
YP_442403.1	identified by match to protein family HMM PF01451
YP_442404.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; match to protein family HMM TIGR02010
YP_442405.1	catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis
YP_442406.1	identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999
YP_442407.1	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011
YP_442408.1	J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins
YP_442409.1	involved in the maturation of iron-sulfur cluster-containing proteins
YP_442410.1	identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007
YP_442411.1	identified by match to protein family HMM PF04384
YP_442413.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_442414.1	recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1
YP_442415.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644
YP_442417.1	identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212
YP_442418.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02211
YP_442419.1	identified by match to protein family HMM PF01026
YP_442420.1	identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361
YP_442422.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_442423.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_442424.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_442425.1	forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein
YP_442427.1	identified by match to protein family HMM PF01430
YP_442428.1	identified by match to protein family HMM PF00132
YP_442429.1	identified by match to protein family HMM PF04305
YP_442430.1	identified by match to protein family HMM PF00561
YP_442431.1	identified by match to protein family HMM PF02231
YP_442432.1	identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057
YP_442433.1	identified by match to protein family HMM PF02163
YP_442434.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_442436.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_442438.1	identified by match to protein family HMM PF00753
YP_442440.1	identified by match to protein family HMM PF08007
YP_442443.1	This protein performs the mismatch recognition step during the DNA repair process
YP_442444.1	identified by match to protein family HMM PF00589
YP_442445.1	identified by match to protein family HMM PF05930
YP_442448.1	identified by match to protein family HMM PF05954
YP_442450.1	identified by match to protein family HMM PF00959
YP_442453.1	identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571
YP_442458.1	identified by match to protein family HMM PF05488
YP_442459.1	identified by match to protein family HMM PF02586
YP_442460.1	identified by match to protein family HMM PF00665
YP_442461.1	identified by match to protein family HMM PF01527
YP_442464.1	identified by match to protein family HMM PF00459
YP_442465.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050
YP_442466.1	identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172
YP_442467.1	catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine
YP_442468.1	identified by match to protein family HMM PF00160
YP_442469.1	identified by match to protein family HMM PF00160
YP_442470.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_442471.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_442472.1	identified by match to protein family HMM PF00730
YP_442473.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_442474.1	identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433
YP_442475.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_442477.1	identified by match to protein family HMM PF00657; match to protein family HMM TIGR01414
YP_442479.1	identified by match to protein family HMM PF00873
YP_442480.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_442481.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_442482.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733
YP_442483.1	identified by match to protein family HMM PF05977; match to protein family HMM PF07690
YP_442485.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733
YP_442487.1	identified by match to protein family HMM PF02668
YP_442491.1	identified by match to protein family HMM PF00456
YP_442492.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_442494.1	identified by match to protein family HMM PF01757
YP_442495.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_442496.1	identified by match to protein family HMM PF00535
YP_442497.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_442498.1	identified by match to protein family HMM PF00288
YP_442499.1	identified by match to protein family HMM PF00291
YP_442500.1	identified by match to protein family HMM PF00206
YP_442502.1	identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500
YP_442503.1	identified by match to protein family HMM PF00440
YP_442504.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_442506.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_442507.1	identified by match to protein family HMM PF00496
YP_442508.1	identified by match to protein family HMM PF00528
YP_442509.1	identified by match to protein family HMM PF00528
YP_442510.1	identified by match to protein family HMM PF00005
YP_442511.1	identified by match to protein family HMM PF00877
YP_442512.1	identified by match to protein family HMM PF01734
YP_442513.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_442514.1	identified by match to protein family HMM PF00583
YP_442515.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_442516.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_442517.1	identified by match to protein family HMM PF03674
YP_442518.1	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle
YP_442519.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493
YP_442520.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_442521.1	identified by match to protein family HMM PF00582
YP_442522.1	identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346
YP_442523.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_442524.1	identified by match to protein family HMM PF00887
YP_442525.1	identified by match to protein family HMM PF00814
YP_442526.1	identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575
YP_442527.1	identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758
YP_442529.1	identified by match to protein family HMM TIGR00097
YP_442530.1	identified by match to protein family HMM PF07690
YP_442531.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_442532.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_442534.1	identified by match to protein family HMM PF00005
YP_442535.1	identified by match to protein family HMM PF00255
YP_442536.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_442537.1	involved in methylation of ribosomal protein L3
YP_442538.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_442539.1	identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617
YP_442540.2	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_442541.1	catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate
YP_442542.1	identified by match to protein family HMM PF00892
YP_442543.1	identified by match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR02168
YP_442546.1	identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575
YP_442547.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_442548.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_442549.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_442550.2	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_442551.2	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_442552.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_442553.2	Catalyzes the phosphorylation of UMP to UDP
YP_442554.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_442555.1	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055
YP_442556.1	identified by match to protein family HMM PF01148
YP_442557.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_442558.1	identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054
YP_442559.1	identified by match to protein family HMM PF01103; match to protein family HMM PF07244
YP_442560.1	identified by match to protein family HMM PF03938
YP_442561.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_442562.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_442563.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_442564.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_442565.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_442566.1	identified by match to protein family HMM PF00588
YP_442567.1	identified by match to protein family HMM PF03618
YP_442568.1	identified by match to protein family HMM PF00082
YP_442569.1	identified by match to protein family HMM PF05023
YP_442570.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_442572.1	identified by match to protein family HMM PF01145
YP_442573.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_442574.1	identified by match to protein family HMM PF03364
YP_442575.1	identified by match to protein family HMM PF03658
YP_442579.1	identified by match to protein family HMM PF05988
YP_442580.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_442582.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_442586.1	identified by match to protein family HMM PF00383
YP_442587.1	catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine
YP_442588.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_442589.1	identified by match to protein family HMM PF02133
YP_442590.1	identified by match to protein family HMM PF01177
YP_442591.1	identified by match to protein family HMM PF01522
YP_442593.2	catalyzes the formation of S-ureidoglycolate and urea from allantoate
YP_442594.1	catalyzes the formation of glyoxylate from (S)-ureidoglycolate
YP_442595.1	identified by match to protein family HMM PF06181
YP_442596.1	identified by match to protein family HMM PF00576
YP_442597.1	catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.
YP_442598.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_442599.1	identified by match to protein family HMM PF07311
YP_442600.1	identified by match to protein family HMM PF03446
YP_442602.1	identified by match to protein family HMM PF01610
YP_442603.1	homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_442604.1	identified by match to protein family HMM PF07719
YP_442605.1	identified by match to protein family HMM PF04012
YP_442606.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_442609.1	identified by match to protein family HMM PF00291
YP_442610.2	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine
YP_442612.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580
YP_442613.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_442614.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_442615.1	identified by match to protein family HMM PF02627
YP_442616.1	identified by match to protein family HMM PF00578
YP_442617.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_442618.1	part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation
YP_442621.1	identified by match to protein family HMM TIGR01409
YP_442622.1	identified by match to protein family HMM PF00494
YP_442627.1	identified by match to protein family HMM PF05488
YP_442634.1	identified by match to protein family HMM PF00850
YP_442635.1	identified by match to protein family HMM PF07690
YP_442637.1	identified by match to protein family HMM PF00196
YP_442638.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_442639.1	identified by match to protein family HMM PF01047
YP_442640.1	identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_442641.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_442643.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_442644.1	binds and unfolds substrates as part of the ClpXP protease
YP_442645.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763
YP_442649.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_442650.1	identified by match to protein family HMM PF00639
YP_442651.1	identified by match to protein family HMM PF00657
YP_442652.1	identified by match to protein family HMM PF00005
YP_442653.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_442654.1	identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197
YP_442656.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_442657.1	identified by match to protein family HMM PF00639
YP_442658.1	identified by match to protein family HMM PF01722
YP_442659.1	Involved in cell division; probably involved in intracellular septation
YP_442660.1	identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357
YP_442661.1	identified by match to protein family HMM PF02696
YP_442662.1	activates fatty acids by binding to coenzyme A
YP_442663.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_442664.1	identified by match to protein family HMM PF00857
YP_442665.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_442667.1	identified by match to protein family HMM PF07876
YP_442668.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_442669.1	identified by match to protein family HMM PF00107
YP_442670.1	identified by match to protein family HMM PF07859
YP_442671.1	identified by match to protein family HMM PF00583
YP_442672.1	identified by match to protein family HMM PF05742
YP_442673.1	identified by match to protein family HMM PF01571
YP_442674.1	identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247
YP_442675.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_442676.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_442677.1	identified by match to protein family HMM PF00583
YP_442678.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_442679.1	identified by match to protein family HMM PF00023
YP_442681.1	identified by match to protein family HMM PF00924
YP_442683.1	identified by match to protein family HMM PF00534
YP_442686.1	identified by match to protein family HMM PF07769
YP_442687.1	identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520
YP_442688.1	identified by match to protein family HMM PF01476; match to protein family HMM PF04972
YP_442692.1	identified by match to protein family HMM PF03446; match to protein family HMM TIGR01505
YP_442694.1	catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate
YP_442695.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_442697.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409
YP_442698.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_442700.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_442702.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_442703.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_442704.1	unwinds double stranded DNA
YP_442705.1	identified by match to protein family HMM PF01865
YP_442706.1	identified by match to protein family HMM PF01384
YP_442707.1	identified by match to protein family HMM PF00877
YP_442708.1	identified by match to protein family HMM PF02562
YP_442709.1	identified by match to protein family HMM PF00578
YP_442710.1	identified by match to protein family HMM PF01522
YP_442712.1	identified by match to protein family HMM PF00551; match to protein family HMM PF02911
YP_442713.1	identified by match to protein family HMM PF00535
YP_442714.1	identified by match to protein family HMM PF01041
YP_442716.1	identified by match to protein family HMM PF02366
YP_442717.1	identified by match to protein family HMM PF04635
YP_442718.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_442719.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_442720.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_442721.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_442722.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682
YP_442723.1	identified by match to protein family HMM PF02391
YP_442725.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_442726.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724
YP_442727.1	identified by match to protein family HMM PF06078
YP_442729.1	identified by match to protein family HMM PF00376
YP_442730.1	identified by match to protein family HMM PF02627
YP_442732.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_442734.2	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_442735.1	identified by match to protein family HMM PF06167
YP_442736.1	identified by match to protein family HMM PF07690
YP_442737.1	identified by match to protein family HMM PF00376
YP_442738.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_442739.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_442740.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_442741.1	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103
YP_442742.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_442743.1	identified by match to protein family HMM PF02515
YP_442744.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_442745.1	identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080
YP_442746.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_442747.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses
YP_442749.1	identified by match to protein family HMM PF03372
YP_442750.1	in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]
YP_442751.1	identified by match to protein family HMM PF01027
YP_442752.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_442753.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048
YP_442755.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_442756.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_442757.1	identified by match to protein family HMM PF07719
YP_442759.2	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_442760.1	Stimulates the elongation of poly(A) tails
YP_442761.1	identified by match to protein family HMM TIGR00231
YP_442762.1	identified by match to protein family HMM PF01145; match to protein family HMM TIGR01933
YP_442763.1	identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932
YP_442765.1	May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_442766.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_442767.1	identified by match to protein family HMM PF00156
YP_442768.1	identified by match to protein family HMM PF02705
YP_442769.1	identified by match to protein family HMM PF00575
YP_442771.1	identified by match to protein family HMM PF04325
YP_442773.1	identified by match to protein family HMM PF03696
YP_442774.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_442775.1	identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726
YP_442776.1	identified by match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01838
YP_442777.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_442778.1	catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis
YP_442779.1	identified by match to protein family HMM PF05233; match to protein family HMM PF07879; match to protein family HMM TIGR01848
YP_442780.1	catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit
YP_442781.1	identified by match to protein family HMM PF00294
YP_442782.1	catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA
YP_442784.1	catalyzes the formation of L-homocysteine from cystathionine
YP_442785.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488
YP_442787.1	identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245
YP_442788.1	identified by match to protein family HMM PF00005
YP_442789.1	identified by match to protein family HMM PF05170
YP_442790.1	identified by match to protein family HMM PF00005
YP_442791.1	identified by match to protein family HMM PF00267
YP_442792.1	identified by match to protein family HMM PF00171
YP_442793.1	identified by match to protein family HMM PF03060
YP_442794.1	identified by match to protein family HMM PF03922; match to protein family HMM TIGR01409
YP_442795.1	identified by match to protein family HMM PF06945
YP_442796.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_442797.1	identified by match to protein family HMM PF01547
YP_442798.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187
YP_442799.1	identified by match to protein family HMM PF00528
YP_442800.1	identified by match to protein family HMM PF00528
YP_442801.1	identified by match to protein family HMM PF01925
YP_442802.1	identified by match to protein family HMM PF04273; match to protein family HMM PF07992; match to protein family HMM TIGR01244
YP_442803.1	identified by match to protein family HMM PF00753
YP_442804.1	identified by match to protein family HMM PF00158; match to protein family HMM TIGR01199
YP_442808.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_442809.1	identified by match to protein family HMM PF00873
YP_442810.1	identified by match to protein family HMM TIGR01730
YP_442811.1	identified by match to protein family HMM PF00440
YP_442812.1	identified by match to protein family HMM PF00571; match to protein family HMM PF00654
YP_442813.1	identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698
YP_442814.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_442817.1	identified by match to protein family HMM PF00294
YP_442818.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_442819.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_442820.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_442826.1	identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199
YP_442831.1	identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106
YP_442832.1	identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383
YP_442833.1	unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity
YP_442837.1	identified by match to protein family HMM PF00924
YP_442838.1	identified by match to protein family HMM PF04205
YP_442839.1	identified by match to protein family HMM PF00034
YP_442842.1	identified by match to protein family HMM PF05573
YP_442844.1	identified by match to protein family HMM PF00005
YP_442845.1	identified by match to protein family HMM PF05048
YP_442846.1	reduces nitrous oxide to nitrogen
YP_442847.1	identified by match to protein family HMM PF02424
YP_442848.1	identified by match to protein family HMM PF00005
YP_442849.1	identified by match to protein family HMM PF01061
YP_442850.1	in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone
YP_442852.1	identified by match to protein family HMM PF00355
YP_442854.1	identified by match to protein family HMM PF01494; match to protein family HMM PF07992
YP_442856.1	identified by match to protein family HMM PF00465
YP_442857.1	identified by match to protein family HMM PF01263
YP_442858.1	identified by match to protein family HMM PF00165; match to protein family HMM PF00532
YP_442859.2	catalyzes the interconversion of D-xylose to D-xylulose
YP_442860.1	identified by match to protein family HMM PF00532; match to protein family HMM TIGR01409; match to protein family HMM TIGR02634
YP_442861.1	with XylFH is part of the high affinity xylose ABC transporter
YP_442862.1	identified by match to protein family HMM PF02653
YP_442863.1	identified by match to protein family HMM PF00532
YP_442864.1	identified by match to protein family HMM PF00005
YP_442865.1	identified by match to protein family HMM PF02653
YP_442866.1	membrane component of a sugar ABC transporter system
YP_442868.1	identified by match to protein family HMM PF00872
YP_442869.1	identified by match to protein family HMM PF00872
YP_442870.1	identified by match to protein family HMM PF00872
YP_442873.1	identified by match to protein family HMM TIGR01199
YP_442874.1	identified by match to protein family HMM PF00305; match to protein family HMM TIGR01409
YP_442876.1	identified by match to protein family HMM PF00561
YP_442878.1	identified by match to protein family HMM PF00975
YP_442879.1	identified by match to protein family HMM PF07859
YP_442880.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_442881.1	identified by match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975
YP_442882.1	identified by match to protein family HMM PF01636
YP_442883.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_442884.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801
YP_442885.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_442886.1	identified by match to protein family HMM PF00109; match to protein family HMM PF02801
YP_442887.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801
YP_442888.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_442890.1	identified by match to protein family HMM PF00165
YP_442891.1	identified by match to protein family HMM PF00267
YP_442892.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_442893.1	identified by match to protein family HMM PF00892
YP_442894.1	identified by match to protein family HMM PF01584
YP_442895.1	identified by match to protein family HMM PF00015
YP_442897.1	activates fatty acids by binding to coenzyme A
YP_442899.1	identified by match to protein family HMM PF04069
YP_442900.1	identified by match to protein family HMM PF00528
YP_442901.1	identified by match to protein family HMM PF00005
YP_442902.1	identified by match to protein family HMM PF00528
YP_442904.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905
YP_442905.1	catalyzes the degradation of arginine to citruline and ammonia
YP_442906.1	catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway
YP_442907.1	reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_442908.1	identified by match to protein family HMM PF00106
YP_442909.1	identified by match to protein family HMM PF03928
YP_442910.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_442911.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_442912.1	identified by match to protein family HMM PF01047
YP_442913.1	identified by match to protein family HMM PF07690
YP_442914.1	identified by match to protein family HMM PF00041; match to protein family HMM PF02638
YP_442915.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465
YP_442916.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_442917.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_442918.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469
YP_442919.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02435
YP_442920.1	catalyzes the interconversion of precorrin-8X and hydrogenobyrinate
YP_442921.1	catalyzes the formation of precorrin-3 from precorrin-2
YP_442922.1	identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466
YP_442923.1	identified by match to protein family HMM PF02839
YP_442925.1	identified by match to protein family HMM PF02230
YP_442927.1	identified by match to protein family HMM PF01078; match to protein family HMM PF07726
YP_442928.1	with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism
YP_442929.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475
YP_442930.1	identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802
YP_442931.1	catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3
YP_442932.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_442933.1	identified by match to protein family HMM PF01656; match to protein family HMM PF07685
YP_442936.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783
YP_442938.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_442939.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733
YP_442940.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01194
YP_442942.1	identified by match to protein family HMM PF01497
YP_442944.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_442945.1	identified by match to protein family HMM PF00005
YP_442947.1	identified by match to protein family HMM PF03621
YP_442948.1	RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease
YP_442951.1	identified by match to protein family HMM PF00106
YP_442952.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782
YP_442953.1	identified by match to protein family HMM PF00107
YP_442954.1	identified by match to protein family HMM PF02653
YP_442955.1	identified by match to protein family HMM PF00005
YP_442956.1	identified by match to protein family HMM PF00532
YP_442957.1	identified by match to protein family HMM PF00165
YP_442960.1	identified by match to protein family HMM PF00733
YP_442961.1	identified by match to protein family HMM PF00005
YP_442964.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_442965.1	MexY; AmrB; involved in resistance to antibiotics; inner membrane protein; belongs to RND (resistance, nodulation, cell division) family of transporters; functions along with MexX and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery
YP_442966.1	MexX; AmrA; involved in resistance to antibiotics; periplasmic membrane fusion protein; functions along with MexY and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery
YP_442967.1	identified by match to protein family HMM PF00440
YP_442968.1	identified by match to protein family HMM PF01551
YP_442969.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_442970.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_442971.1	identified by match to protein family HMM PF00497
YP_442973.1	identified by match to protein family HMM PF07811
YP_442974.1	identified by match to protein family HMM PF07721
YP_442975.1	identified by match to protein family HMM PF00482
YP_442976.1	identified by match to protein family HMM PF00482
YP_442977.1	identified by match to protein family HMM PF00437
YP_442978.1	identified by match to protein family HMM PF00072
YP_442980.1	identified by match to protein family HMM PF00263
YP_442981.1	identified by match to protein family HMM PF06981
YP_442982.1	identified by match to protein family HMM PF01478
YP_442983.1	identified by match to protein family HMM PF04964
YP_442987.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883
YP_442988.1	identified by match to protein family HMM PF04293
YP_442989.1	identified by match to protein family HMM PF04285
YP_442990.1	identified by match to protein family HMM PF06798
YP_442991.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_442992.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152
YP_442993.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_442994.1	identified by match to protein family HMM PF02653
YP_442995.1	identified by match to protein family HMM PF00005
YP_442996.1	identified by match to protein family HMM PF00532
YP_442997.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_442998.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00968
YP_442999.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140
YP_443000.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139
YP_443001.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971
YP_443002.1	Represses a number of genes involved in the response to DNA damage
YP_443005.1	identified by match to protein family HMM PF00582
YP_443006.1	involved in the export of lipooligosaccharides during nodulation
YP_443007.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR01291
YP_443010.1	identified by match to protein family HMM PF03773
YP_443011.1	identified by match to protein family HMM PF00248
YP_443012.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_443013.1	identified by match to protein family HMM PF01638
YP_443014.1	identified by match to protein family HMM PF00375
YP_443015.1	identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742
YP_443018.1	identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638
YP_443019.1	identified by match to protein family HMM PF00005
YP_443020.1	identified by match to protein family HMM PF00528
YP_443021.1	catalyzes the release of sulfite from alkanesulfonates
YP_443024.1	catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA
YP_443025.1	identified by match to protein family HMM PF00893
YP_443026.1	identified by match to protein family HMM PF06142
YP_443027.1	identified by match to protein family HMM PF00293
YP_443028.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_443029.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_443030.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_443031.1	identified by match to protein family HMM PF00497
YP_443032.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_443033.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_443034.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_443035.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_443036.1	identified by match to protein family HMM PF01510
YP_443037.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186
YP_443038.1	identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063
YP_443039.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_443041.1	identified by match to protein family HMM PF00916; match to protein family HMM PF01740
YP_443043.1	identified by match to protein family HMM PF00583
YP_443044.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_443045.1	identified by match to protein family HMM PF00440
YP_443046.1	identified by match to protein family HMM PF00501
YP_443049.1	identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383
YP_443051.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199
YP_443054.1	identified by match to protein family HMM PF07719
YP_443055.1	identified by match to protein family HMM PF00482
YP_443056.1	identified by match to protein family HMM PF00482
YP_443057.1	identified by match to protein family HMM PF00437
YP_443059.1	identified by match to protein family HMM PF00263
YP_443060.1	identified by match to protein family HMM PF06981
YP_443061.1	identified by match to protein family HMM PF07811
YP_443062.1	identified by match to protein family HMM PF01478
YP_443063.1	identified by match to protein family HMM PF04964
YP_443070.1	identified by match to protein family HMM PF03969
YP_443071.1	E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_443072.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_443073.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_443074.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394
YP_443075.1	identified by match to protein family HMM PF01047
YP_443076.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_443077.1	identified by match to protein family HMM PF00529
YP_443078.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_443079.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_443080.2	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_443081.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_443082.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_443083.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_443084.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_443085.1	identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281
YP_443086.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_443090.1	identified by match to protein family HMM PF02698
YP_443094.1	identified by match to protein family HMM PF03992
YP_443098.1	identified by match to protein family HMM TIGR01444
YP_443099.1	identified by match to protein family HMM PF01610
YP_443100.1	identified by match to protein family HMM PF00665
YP_443101.1	identified by match to protein family HMM PF01527
YP_443104.1	identified by match to protein family HMM PF00376
YP_443105.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_443106.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_443107.2	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_443108.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_443109.1	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001
YP_443110.1	identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168
YP_443111.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_443112.1	identified by match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_443113.1	identified by match to protein family HMM PF01042
YP_443114.1	identified by match to protein family HMM PF00561
YP_443116.1	identified by match to protein family HMM PF07992
YP_443118.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_443120.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR01409
YP_443121.1	identified by match to protein family HMM PF00106
YP_443122.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_443123.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_443124.1	identified by match to protein family HMM PF00196
YP_443126.1	identified by match to protein family HMM PF03061
YP_443127.1	identified by match to protein family HMM PF00106
YP_443128.1	identified by match to protein family HMM PF05187
YP_443129.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_443130.1	identified by match to protein family HMM PF01553; match to protein family HMM PF07690
YP_443131.1	identified by match to protein family HMM PF00571
YP_443133.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_443134.1	identified by match to protein family HMM PF00258
YP_443136.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_443137.1	identified by match to protein family HMM PF00149
YP_443139.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_443140.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_443141.1	identified by match to protein family HMM PF04632
YP_443142.1	identified by match to protein family HMM PF07869
YP_443143.1	identified by match to protein family HMM PF00529
YP_443144.1	identified by match to protein family HMM PF00015
YP_443145.1	identified by match to protein family HMM PF07690
YP_443146.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_443147.1	identified by match to protein family HMM PF00580
YP_443148.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_443149.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_443151.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF05226
YP_443152.1	identified by match to protein family HMM PF01476
YP_443153.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_443155.1	identified by match to protein family HMM PF01206
YP_443156.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_443157.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_443158.1	identified by match to protein family HMM PF01380
YP_443159.1	identified by match to protein family HMM PF00532
YP_443160.1	identified by match to protein family HMM PF02653
YP_443161.1	identified by match to protein family HMM PF00005
YP_443162.1	identified by match to protein family HMM PF00294
YP_443163.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02776
YP_443164.1	identified by match to protein family HMM PF06960
YP_443165.1	identified by match to protein family HMM PF06845
YP_443166.1	identified by match to protein family HMM PF00005
YP_443167.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02653
YP_443168.1	identified by match to protein family HMM PF02653
YP_443169.1	identified by match to protein family HMM PF03061
YP_443170.1	identified by match to protein family HMM PF00465
YP_443171.1	identified by match to protein family HMM PF01906
YP_443172.1	identified by match to protein family HMM PF00293
YP_443173.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595
YP_443174.1	identified by match to protein family HMM PF06779; match to protein family HMM PF07690
YP_443175.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_443176.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_443177.1	identified by match to protein family HMM PF02515
YP_443180.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_443181.1	identified by match to protein family HMM PF00293
YP_443183.1	identified by match to protein family HMM PF00933
YP_443185.1	identified by match to protein family HMM PF03150
YP_443186.1	identified by match to protein family HMM PF04185
YP_443187.1	enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity
YP_443189.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_443190.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_443191.1	identified by match to protein family HMM PF05229
YP_443192.1	identified by match to protein family HMM PF00577
YP_443194.1	identified by match to protein family HMM PF05229
YP_443198.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_443199.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_443200.1	identified by match to protein family HMM PF04909
YP_443201.1	identified by match to protein family HMM PF00816
YP_443202.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_443203.1	identified by match to protein family HMM PF03050
YP_443204.1	identified by match to protein family HMM PF05717
YP_443205.1	identified by match to protein family HMM PF01527
YP_443208.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_443212.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_443220.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_443221.1	identified by match to protein family HMM PF05488
YP_443223.1	identified by match to protein family HMM PF05947
YP_443227.1	identified by match to protein family HMM PF00041; match to protein family HMM TIGR01840
YP_443228.1	identified by match to protein family HMM PF00816
YP_443229.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_443230.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_443231.1	identified by match to protein family HMM PF00589
YP_443232.1	identified by match to protein family HMM PF00583
YP_443235.1	identified by match to protein family HMM PF03865
YP_443237.1	identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901
YP_443240.1	Bacteriophage A118; similar to lin0084
YP_443245.1	identified by match to protein family HMM PF01381
YP_443247.1	identified by match to protein family HMM PF01381
YP_443249.1	identified by match to protein family HMM PF03050
YP_443250.1	identified by match to protein family HMM PF05717
YP_443251.1	identified by match to protein family HMM PF01527
YP_443254.1	identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348
YP_443257.1	identified by match to protein family HMM PF02384; match to protein family HMM PF02506
YP_443258.1	identified by match to protein family HMM PF00665
YP_443259.1	identified by match to protein family HMM PF01527
YP_443260.1	identified by match to protein family HMM PF00239; match to protein family HMM PF07508
YP_443261.1	identified by match to protein family HMM PF02195
YP_443262.1	identified by match to protein family HMM PF00872
YP_443263.1	phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_443264.1	identified by match to protein family HMM PF01263
YP_443265.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_443266.1	identified by match to protein family HMM PF00501
YP_443268.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_443271.1	identified by match to protein family HMM TIGR00249
YP_443277.1	identified by match to protein family HMM PF02541
YP_443278.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_443279.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_443280.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154
YP_443281.1	identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135
YP_443282.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_443283.1	Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_443284.1	part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_443285.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975
YP_443286.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_443287.1	identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_443288.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241
YP_443289.1	identified by match to protein family HMM PF01728
YP_443290.1	identified by match to protein family HMM PF01985
YP_443292.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_443293.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_443294.1	identified by match to protein family HMM PF01810
YP_443295.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_443296.1	identified by match to protein family HMM PF00165
YP_443298.1	identified by match to protein family HMM PF07690
YP_443299.1	identified by match to protein family HMM PF01464; match to protein family HMM PF01476
YP_443300.1	identified by match to protein family HMM PF00753
YP_443302.1	identified by match to protein family HMM PF00075
YP_443303.1	3'-5' exonuclease of DNA polymerase III
YP_443304.2	identified by match to protein family HMM PF02694
YP_443305.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_443306.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_443309.1	identified by match to protein family HMM PF00698
YP_443310.1	identified by match to protein family HMM PF01874
YP_443311.1	catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein
YP_443312.1	identified by match to protein family HMM PF06833
YP_443313.1	The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A
YP_443314.1	acyl carrier protein of malonate decarboxylase
YP_443316.1	identified by match to protein family HMM PF03818
YP_443317.1	identified by match to protein family HMM PF03817
YP_443318.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_443319.1	identified by match to protein family HMM PF00725; match to protein family HMM PF02737
YP_443320.1	catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP
YP_443321.1	identified by match to protein family HMM PF00011
YP_443322.1	identified by match to protein family HMM PF00011
YP_443329.1	identified by match to protein family HMM PF00106
YP_443330.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_443333.1	identified by match to protein family HMM PF04299
YP_443336.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_443339.1	identified by match to protein family HMM PF00267
YP_443340.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_443341.1	identified by match to protein family HMM PF01547
YP_443342.1	identified by match to protein family HMM PF00528
YP_443345.1	identified by match to protein family HMM PF00528
YP_443346.1	identified by match to protein family HMM PF00005
YP_443347.1	identified by match to protein family HMM PF00149
YP_443348.1	identified by match to protein family HMM PF01548; match to protein family HMM PF02371
YP_443349.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_443350.1	identified by match to protein family HMM PF00892
YP_443352.1	identified by match to protein family HMM PF00174
YP_443356.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_443359.1	identified by match to protein family HMM PF00892
YP_443360.1	identified by match to protein family HMM PF00563
YP_443361.1	identified by match to protein family HMM PF00472
YP_443363.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609
YP_443364.1	identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450
YP_443365.1	identified by match to protein family HMM PF05976
YP_443366.1	identified by match to protein family HMM PF00324
YP_443368.1	identified by match to protein family HMM PF01547
YP_443369.1	identified by match to protein family HMM PF00528
YP_443370.1	identified by match to protein family HMM PF00005
YP_443371.1	identified by match to protein family HMM PF01037
YP_443372.1	identified by match to protein family HMM PF05995
YP_443377.1	identified by match to protein family HMM PF01614
YP_443378.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_443379.1	identified by match to protein family HMM PF00873
YP_443380.1	identified by match to protein family HMM PF00873
YP_443381.1	B. subtilis YhfK protein homolog lmo2391
YP_443382.1	identified by match to protein family HMM PF00578
YP_443383.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_443385.1	identified by match to protein family HMM PF00034
YP_443386.1	identified by match to protein family HMM PF00115
YP_443389.1	identified by match to protein family HMM PF00034
YP_443390.1	identified by match to protein family HMM PF00034
YP_443394.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_443397.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_443398.1	identified by match to protein family HMM PF00165
YP_443400.1	identified by match to protein family HMM PF00557
YP_443401.1	identified by match to protein family HMM PF01527
YP_443402.1	identified by match to protein family HMM PF05717
YP_443404.1	identified by match to protein family HMM PF00872
YP_443406.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_443407.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR02288
YP_443408.1	catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA
YP_443409.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_443410.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; match to protein family HMM TIGR02286
YP_443411.1	identified by match to protein family HMM TIGR02155
YP_443412.1	identified by match to protein family HMM PF03562; match to protein family HMM PF06725
YP_443413.1	protein associated with Co2+ and Mg2+ efflux
YP_443414.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_443415.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_443416.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_443417.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_443418.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_443419.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_443420.1	identified by match to protein family HMM PF01928
YP_443421.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_443422.1	identified by match to protein family HMM PF02525
YP_443423.1	identified by match to protein family HMM PF00595; match to protein family HMM PF05299
YP_443425.1	identified by match to protein family HMM PF01360; match to protein family HMM TIGR01988
YP_443427.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_443428.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773
YP_443429.1	identified by match to protein family HMM PF04944
YP_443431.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_443432.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_443433.1	identified by match to protein family HMM PF00857
YP_443434.1	identified by match to protein family HMM PF00557
YP_443436.2	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_443437.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_443438.1	identified by match to protein family HMM TIGR00536
YP_443439.1	identified by match to protein family HMM TIGR00365
YP_443440.1	catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate
YP_443441.1	identified by match to protein family HMM PF02900
YP_443442.1	identified by match to protein family HMM PF00324
YP_443443.1	identified by match to protein family HMM PF00313
YP_443445.1	identified by match to protein family HMM PF00881
YP_443446.1	identified by match to protein family HMM PF07690
YP_443447.1	identified by match to protein family HMM PF00440
YP_443452.1	identified by match to protein family HMM PF01433
YP_443456.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412
YP_443457.1	identified by match to protein family HMM PF02321
YP_443461.1	identified by match to protein family HMM PF06744; match to protein family HMM PF06761
YP_443463.1	identified by match to protein family HMM PF00691
YP_443464.1	identified by match to protein family HMM PF06812
YP_443465.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724
YP_443466.1	identified by match to protein family HMM PF06996
YP_443467.1	identified by match to protein family HMM PF05947
YP_443468.1	identified by match to protein family HMM PF07025
YP_443469.1	identified by match to protein family HMM PF05638
YP_443470.1	identified by match to protein family HMM PF05943
YP_443471.1	identified by match to protein family HMM PF05591
YP_443472.1	identified by match to protein family HMM PF07719
YP_443474.1	identified by match to protein family HMM PF05936
YP_443477.1	identified by match to protein family HMM PF04386
YP_443478.1	identified by match to protein family HMM PF02798
YP_443479.1	identified by match to protein family HMM PF02167
YP_443480.1	identified by match to protein family HMM PF00033
YP_443481.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416
YP_443482.1	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486
YP_443483.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595
YP_443484.1	identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945
YP_443485.1	identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410
YP_443486.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_443487.1	identified by match to protein family HMM PF01230
YP_443489.2	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_443490.1	identified by match to protein family HMM PF01502
YP_443491.2	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_443492.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_443493.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_443494.1	identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427
YP_443495.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_443496.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_443497.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_443498.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_443499.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_443500.1	identified by match to protein family HMM PF01722
YP_443501.1	identified by match to protein family HMM PF01061
YP_443502.1	identified by match to protein family HMM PF00005
YP_443504.1	identified by match to protein family HMM PF05494
YP_443505.1	identified by match to protein family HMM PF04333
YP_443506.1	identified by match to protein family HMM PF02470
YP_443507.1	identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056
YP_443508.1	identified by match to protein family HMM PF00005
YP_443509.1	identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693
YP_443510.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_443511.1	with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate
YP_443513.2	identified by match to protein family HMM PF00005
YP_443515.1	identified by match to protein family HMM TIGR02258
YP_443516.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_443517.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_443518.1	identified by match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898
YP_443519.1	identified by match to protein family HMM PF07605
YP_443520.1	identified by match to protein family HMM PF03922
YP_443521.1	hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate
YP_443522.1	part of the UgpABCE glycerol-3-phosphate uptake system
YP_443523.1	with UgpABC is involved in uptake of glycerol-3-phosphate
YP_443524.1	identified by match to protein family HMM PF00528
YP_443525.1	with UgpACE is involved in the uptake of glycerol-3-phosphate
YP_443526.1	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_443527.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_443528.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_443529.1	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515
YP_443531.1	identified by match to protein family HMM PF05137
YP_443533.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_443534.1	defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly
YP_443535.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048
YP_443536.1	in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme
YP_443537.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_443538.1	identified by match to protein family HMM PF01578
YP_443539.1	identified by match to protein family HMM PF05140
YP_443540.1	identified by match to protein family HMM PF00034
YP_443541.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_443542.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_443543.1	identified by match to protein family HMM PF02683
YP_443544.1	identified by match to protein family HMM PF03091
YP_443545.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_443546.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_443547.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_443548.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_443549.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_443550.2	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_443551.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_443552.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_443553.1	late assembly protein
YP_443554.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_443555.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_443556.1	binds 5S rRNA along with protein L5 and L25
YP_443557.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_443558.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_443559.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_443560.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_443561.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_443562.2	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_443563.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_443564.1	one of the stabilizing components for the large ribosomal subunit
YP_443565.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_443566.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_443567.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_443568.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_443569.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_443570.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_443571.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_443572.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_443573.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_443574.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_443575.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_443576.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_443577.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_443578.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389
YP_443579.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_443580.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_443581.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_443582.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_443583.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_443584.1	binds directly to 23S ribosomal RNA
YP_443585.1	Modulates Rho-dependent transcription termination
YP_443586.2	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_443587.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_443589.1	identified by match to protein family HMM PF01527
YP_443590.1	identified by match to protein family HMM PF05717
YP_443591.1	identified by match to protein family HMM PF00657
YP_443592.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA
YP_443593.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation
YP_443594.1	identified by match to protein family HMM PF05138; match to protein family HMM TIGR02158
YP_443595.1	identified by match to protein family HMM PF01883; match to protein family HMM TIGR02159
YP_443596.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160
YP_443598.1	identified by match to protein family HMM PF00440
YP_443599.1	identified by match to protein family HMM PF00583
YP_443600.1	identified by match to protein family HMM PF01037
YP_443601.1	identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263
YP_443603.1	Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
YP_443605.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_443606.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_443607.1	identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481
YP_443608.1	identified by match to protein family HMM PF00258
YP_443609.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis
YP_443612.1	identified by match to protein family HMM PF03922
YP_443613.1	identified by match to protein family HMM PF01610
YP_443614.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_443615.1	identified by match to protein family HMM PF07690
YP_443616.1	identified by match to protein family HMM PF01810
YP_443618.1	identified by match to protein family HMM PF01927
YP_443624.1	identified by match to protein family HMM PF00324
YP_443626.1	identified by match to protein family HMM PF00872
YP_443627.1	identified by match to protein family HMM PF00589
YP_443629.1	identified by match to protein family HMM PF01381
YP_443630.1	identified by match to protein family HMM PF00239; match to protein family HMM PF02796
YP_443633.1	identified by match to protein family HMM PF00872
YP_443635.1	identified by match to protein family HMM PF03050
YP_443636.1	identified by match to protein family HMM PF05717
YP_443637.1	identified by match to protein family HMM PF01527
YP_443638.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_443639.1	identified by match to protein family HMM PF00034
YP_443640.1	identified by match to protein family HMM PF04972
YP_443641.1	identified by match to protein family HMM PF01380; match to protein family HMM TIGR00441
YP_443642.1	identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252
YP_443643.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096
YP_443644.1	identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413
YP_443645.1	identified by match to protein family HMM PF00753
YP_443647.1	identified by match to protein family HMM PF01037
YP_443648.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_443649.1	identified by match to protein family HMM PF00816
YP_443650.1	identified by match to protein family HMM PF01243
YP_443651.1	identified by match to protein family HMM PF07690
YP_443652.1	identified by match to protein family HMM PF01094
YP_443653.1	identified by match to protein family HMM PF03060
YP_443654.1	identified by match to protein family HMM PF01738
YP_443655.1	identified by match to protein family HMM PF01425
YP_443656.1	identified by match to protein family HMM PF01610
YP_443657.1	identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676
YP_443658.1	identified by match to protein family HMM PF04020
YP_443659.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_443660.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes
YP_443662.1	positive regulator of class III flagellar genes
YP_443663.1	membrane protein involved in the flagellar export apparatus
YP_443664.2	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_443665.1	identified by match to protein family HMM PF01593
YP_443666.1	identified by match to protein family HMM PF06983
YP_443669.1	cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation
YP_443670.1	identified by match to protein family HMM PF00072
YP_443671.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_443672.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_443673.1	identified by match to protein family HMM PF01739; match to protein family HMM PF03705
YP_443674.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_443675.1	identified by match to protein family HMM PF01584
YP_443676.1	identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895
YP_443677.1	identified by match to protein family HMM PF00072
YP_443678.1	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_443679.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_443680.1	With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems
YP_443681.1	with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems
YP_443682.1	identified by match to protein family HMM PF00534
YP_443683.1	identified by match to protein family HMM PF00816
YP_443684.1	porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure
YP_443685.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_443686.1	identified by match to protein family HMM PF01869
YP_443687.1	identified by match to protein family HMM PF03352
YP_443688.1	identified by match to protein family HMM PF01548; match to protein family HMM PF02371
YP_443689.2	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_443690.1	structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus
YP_443691.1	identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196
YP_443695.1	identified by match to protein family HMM PF01810
YP_443696.1	identified by match to protein family HMM PF04185; match to protein family HMM TIGR01409
YP_443698.1	identified by match to protein family HMM PF05643
YP_443700.1	identified by match to protein family HMM PF03783
YP_443701.1	identified by match to protein family HMM PF00561
YP_443703.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_443704.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_443705.1	identified by match to protein family HMM PF01041
YP_443708.1	identified by match to protein family HMM PF00132
YP_443712.1	identified by match to protein family HMM PF01565; match to protein family HMM PF08031
YP_443713.1	identified by match to protein family HMM PF03067
YP_443716.1	identified by match to protein family HMM PF00583
YP_443718.1	identified by match to protein family HMM PF00816
YP_443719.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_443722.1	identified by match to protein family HMM PF05488
YP_443725.1	identified by match to protein family HMM PF00239; match to protein family HMM PF02796
YP_443726.1	identified by match to protein family HMM PF00589
YP_443727.2	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_443729.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_443730.1	identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278
YP_443731.1	identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188
YP_443732.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_443733.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_443734.1	binds the polymerase to DNA and acts as a sliding clamp
YP_443735.2	negatively supercoils closed circular double-stranded DNA
YP_443738.1	identified by match to protein family HMM PF00872
YP_443739.1	identified by match to protein family HMM PF00126
YP_443740.1	identified by match to protein family HMM PF07690
YP_443741.1	identified by match to protein family HMM PF00171
YP_443742.1	Ethanolamine operon regulatory protein; identified by match to protein family HMM PF00165
YP_443744.1	catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit
YP_443745.1	identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720
YP_443747.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_443748.1	identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527
YP_443749.1	identified by match to protein family HMM PF01571; match to protein family HMM TIGR00528
YP_443751.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_443752.1	identified by match to protein family HMM PF00657
YP_443754.1	identified by match to protein family HMM PF00580
YP_443755.1	identified by match to protein family HMM PF00034
YP_443756.1	identified by match to protein family HMM PF01381
YP_443761.1	Orf301; identified by match to protein family HMM PF05707
YP_443762.1	identified by match to protein family HMM PF00263
YP_443765.1	identified by match to protein family HMM PF01609
YP_443767.1	identified by match to protein family HMM PF00589
YP_443769.1	identified by match to protein family HMM PF01381
YP_443770.1	identified by match to protein family HMM PF00589
YP_443771.1	identified by match to protein family HMM PF00872
YP_443773.1	catalyzes the formation of acetaldehyde from ethanolamine
YP_443774.1	identified by match to protein family HMM PF06751
YP_443775.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR00908
YP_443776.1	identified by match to protein family HMM PF01757
YP_443778.1	identified by match to protein family HMM PF05552
YP_443782.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_443783.1	identified by match to protein family HMM PF00376; match to protein family HMM TIGR02047
YP_443786.1	identified by match to protein family HMM PF00497
YP_443787.1	catalyzes the transfer of an amino moiety
YP_443789.1	identified by match to protein family HMM PF00440
YP_443790.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_443791.1	identified by match to protein family HMM PF00501
YP_443792.1	identified by match to protein family HMM PF01094
YP_443793.1	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein
YP_443795.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_443796.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_443797.1	identified by match to protein family HMM PF00497
YP_443798.1	activates fatty acids by binding to coenzyme A
YP_443799.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_443800.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_443801.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_443802.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_443803.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_443804.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_443805.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_443806.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_443809.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_443810.1	identified by match to protein family HMM PF01656
YP_443811.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_443812.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_443813.1	identified by match to protein family HMM PF00005
YP_443814.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02653
YP_443815.1	identified by match to protein family HMM PF02653
YP_443816.1	identified by match to protein family HMM PF01094
YP_443819.1	identified by match to protein family HMM PF02653
YP_443820.1	identified by match to protein family HMM PF02653
YP_443821.1	identified by match to protein family HMM PF01094
YP_443822.1	identified by match to protein family HMM PF00005
YP_443823.1	identified by match to protein family HMM PF00005
YP_443824.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_443825.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_443826.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_443827.1	identified by match to protein family HMM PF01928
YP_443828.1	identified by match to protein family HMM PF01037
YP_443829.1	phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin
YP_443830.1	4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction
YP_443831.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_443832.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_443833.1	identified by match to protein family HMM PF00856
YP_443834.1	identified by match to protein family HMM PF00724
YP_443835.1	Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group
YP_443836.1	identified by match to protein family HMM PF01047