-- dump date   	20140619_021239
-- class       	Genbank::Gene
-- table       	gene_note
-- id	note
5595969	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; identified by match to protein family HMM PF01717; match to protein family HMM PF08267; match to protein family HMM TIGR01371
5596173	transcriptional regulator; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00486
5595733	two-component regulator; this gene contains a frame shift which may be the result of sequencing error
5596454	branched chain amino acid transporter AzlC
5596225	membrane protein YjdB; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03653
5596158	glyoxalase family protein; this gene contains a frame shift which may be the result of sequencing error
5596850	cytoChrome c-553 (cytochrome C553; Low-potential cytochromec); identified by match to protein family HMM PF01261; match to protein family HMM TIGR00587
5596517	carbamoyltransferase hypF2 (carbamoyl phosphate-converting enzyme hypF2; [NiFe]-hydrogenase maturation factor hypF2; hydrogenase maturation protein hypF2); identified by match to protein family HMM PF00460; match to protein family HMM PF06429
5596784	peptidase family protein; this gene contains a frame shift which may be the result of sequencing error
5596068	type VI secretion protein, family; identified by match to protein family HMM PF05947; match to protein family HMM TIGR03359
5597059	phage integrase
5596994	conserved hypothetical protein; identified by match to protein family HMM PF06744
5597453	ABC-type dipeptide oligopeptide nickel transporter periplasmic component; this region contains one or more premature stops and/or frameshifts
5596496	ankyrin repeat protein; this region contains one or more premature stops and/or frameshifts
5597391	formate dehydrogenase H (formate-hydrogen-lyase-linked,selenocysteine-containing polypeptide; formate dehydrogenase-H alphasubunit; FDH-H); this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00329; match to protein family HMM TIGR01961
5597043	formate dehydrogenase, subunit alpha; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00499
5597247	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
5597714	carbamoyl-phosphate synthase, small subunit; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368
5596379	cytochrome C oxidase Cbb3-type, subunit I; identified by match to protein family HMM PF00115; match to protein family HMM TIGR00780
5597694	cytochrome C oxidase Cbb3-type, subunit II; identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781
5596315	conserved protein/domain typically associated with flavoprotein oxygenase, Dim6/ntab family; this gene contains a premature stop which may be the result of sequencing error
5596050	formate dehydrogenase; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF04879; match to protein family HMM TIGR01409
5597650	phosphomethylpyrimidine kinase (HMP-phosphate kinase; HMP-P kinase); identified by match to protein family HMM PF00893
5597245	orotidine 5'-phosphate decarboxylase; identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740
5596820	proline/threonine-rich protein
5596925	50S ribosomal protein L2
5595968	50S ribosomal protein L4 (BL4); identified by match to protein family HMM PF00817
5596649	chorismate synthase; identified by match to protein family HMM PF01264; match to protein family HMM TIGR00033
5597322	ribonuclease III; identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191
5597504	RNase H; identified by match to protein family HMM PF00075
5595745	phosphomethylpyrimidine kinase; identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01879
5596294	alternative transcription initiation factor, sigma-F; identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM TIGR00771
5596412	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
5597225	DNA polymerase I; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593
5595964	GTP-binding protein Obg/CgtA; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01018; match to protein family HMM PF01926; match to protein family HMM TIGR02729
5596009	formate--tetrahydrofolate ligase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01268
5596336	fibronectin type III domain protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01988
5595882	cation-transporting ATPase PacS; this gene contains a frame shift which may be the result of sequencing error
5597179	methionyl-tRNA synthetase; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01588; match to protein family HMM PF09334; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399
5597372	integrase; this gene contains a frame shift which may be the result of sequencing error
5595650	phage integrase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01230
5595626	phenylalanyl-tRNA synthetase subunit beta; identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03484; match to protein family HMM TIGR00472
5596138	3-phosphoshikimate 1-carboxyvinyltransferase; identified by match to protein family HMM PF00275; match to protein family HMM TIGR01356
5596996	beta-lactamase HcpA (Cysteine-rich 28 kDaprotein); this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF01584
5596483	transcription termination factor Rho polarity suppressor; identified by match to protein family HMM PF01475
5597317	FhaB protein; identified by match to protein family HMM PF05235
5595587	hemolysin activation protein HecB; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM TIGR01934
5595767	FhaC protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01739
5596484	probable activation/secretion protein; identified by match to protein family HMM PF04164
5597436	aspartate-semialdehyde dehydrogenase; identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296
5596954	glutamine ABC transporter ATP-binding protein; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
5596548	phosphate import ATP-binding protein PstB (phosphate-transporting ATPase; ABC phosphate transporter); this region contains one or more premature stops and/or frameshifts
5595778	ESTs gb|H37641 and gb|come from this gene; this gene contains a frame shift which may be the result of sequencing error
5595592	phenazine biosynthesis protein; this gene contains a frame shift which may be the result of sequencing error
5596271	DNA-directed RNA polymerase subunit beta; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565; match to protein family HMM TIGR02013
5595847	ribosomal protein S12; identified by match to protein family HMM PF00164; match to protein family HMM TIGR00981
5596089	translation elongation factor G; identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484
5596153	conserved hypothetical protein
5595692	hydrogenase 4 membrane subunit; identified by match to protein family HMM PF00210
5597251	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
5596232	conserved hypothetical protein; this region contains one or more premature stops and/or frameshifts
5596532	ProP protein; this gene contains a frame shift which may be the result of sequencing error
5596092	formate dehydrogenase subunit A; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360
5596023	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
5597224	cation efflux family protein; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
5595892	phosphate import ATP-binding protein PstB (phosphate-transporting ATPase; ABC phosphate transporter); this region contains one or more premature stops and/or frameshifts
5596219	ATPase AAA, central region; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536
5596569	ATPase AAA, central region; this gene contains a frame shift which may be the result of sequencing error
5596740	phosphoribosylformylglycinamidine synthase II; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR01736
5596319	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
5595687	product YwnB; this gene contains a premature stop which may be the result of sequencing error
5596311	ferredoxin-type protein NapH; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00348
5596836	phage integrase; identified by match to protein family HMM PF02633
5597635	malate dehydrogenase; identified by match to protein family HMM PF01162; match to protein family HMM PF02637; match to protein family HMM PF02934; match to protein family HMM TIGR00133
5597506	cable pili-associated 22 kDa adhesin protein; identified by match to protein family HMM PF01210; match to protein family HMM PF07479
5597279	indole-3-glycerol phosphate synthase; identified by match to protein family HMM PF00218
5596559	ribulose-phosphate 3-epimerase; identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163
5597268	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; this region contains one or more premature stops and/or frameshifts
5596431	tryptophan synthase beta chain; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03883
5597044	tryptophan synthase beta chain 1; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00669
5597051	histidine kinase; this region contains one or more premature stops and/or frameshifts
5597452	DNA polymerase I; identified by match to protein family HMM PF00593; match to protein family HMM PF07715
5597303	protein jhp_0109; identified by match to protein family HMM PF00756
5597551	membrane protein; identified by match to protein family HMM PF09335
5595976	nlpa lipoprotein; identified by match to protein family HMM PF03180
5597610	thiazole biosynthesis protein ThiG; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF05690
5595624	Ni/Fe-hydrogenase, B-type cytochrome subunit; identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125
5595638	hydrolase, alpha/beta fold family; identified by match to protein family HMM PF00561
5596467	D-ala D-ala ligase N-terminus; identified by match to protein family HMM PF01820; match to protein family HMM PF02222; match to protein family HMM PF07478; match to protein family HMM TIGR01205
5596482	conserved hypothetical protein
5597347	integral membrane protein MviN; identified by match to protein family HMM PF01554; match to protein family HMM PF03023; match to protein family HMM TIGR01695
5596623	peptidase family protein; this gene contains a frame shift which may be the result of sequencing error
5597101	phosphoribosylaminoimidazole carboxylase, catalytic subunit; identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162
5597418	Cro repressor helix-turn-helix motif:Helix-turn-helix motif; identified by match to protein family HMM PF01136
5595771	beta-lactamase HcpA (Cysteine-rich 28 kDaprotein); this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF08238
5596746	type III effector HopAH2-2; this gene contains a frame shift which may be the result of sequencing error
5596579	AzlC protein; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF03591
5597512	beta-lactamase HcpA (Cysteine-rich 28 kDaprotein); this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF08238
5597669	endonuclease III; identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083
5596899	hypothetical protein; identified by glimmer
5596479	threonine synthase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03091
5596217	tetraacyldisaccharide-1-P 4'-kinase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02606
5596475	NAD+ synthetase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02540; match to protein family HMM PF06508; match to protein family HMM TIGR00552
5595641	TonB-dependent receptor domain protein; identified by match to protein family HMM PF00593; match to protein family HMM PF07715
5596308	cell division protein FtsZ; identified by match to protein family HMM PF00165
5597543	oxygen-independent coproporphyrinogen III oxidase; identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539
5596443	twin arginine-targeting protein translocase TatC; identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945
5596744	S-adenosylmethionine:tRNA ribosyltransferase-isomerase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02547; match to protein family HMM TIGR00113
5596126	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250
5597557	threonine synthase (ThrC-1); identified by match to protein family HMM PF07656
5595801	starvation-inducible DNA-binding protein Dps
5597604	methyl-accepting chemotaxis protein (MCP) signaling domain; identified by match to protein family HMM PF00015; match to protein family HMM PF00672
5597695	cation-transporting ATPase PacS; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00724
5597278	SelT/SelW/selH; this gene contains a premature stop which may be the result of sequencing error
5596055	fibronectin type III domain protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00041
5597394	conserved hypothetical protein
5595661	conserved hypothetical protein; identified by match to protein family HMM PF03691
5597680	phospho-N-acetylmuramoyl-pentapeptide-transferase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445
5596551	hemolysin activator-related protein; this gene contains a frame shift which may be the result of sequencing error
5596635	filamentous hemagglutinin; this gene contains a frame shift which may be the result of sequencing error
5595827	hypothetical protein; identified by glimmer
5597283	fumarate hydratase B subunit beta; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF04879; match to protein family HMM TIGR01409
5597308	FhuE receptor (Outer-membrane receptor for Fe(III)-coprogen,Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420
5597456	twin-arginine translocation pathway signal; this gene contains a premature stop which may be the result of sequencing error
5596142	conserved hypothetical protein; this region contains one or more premature stops and/or frameshifts
5596101	conserved hypothetical protein; this region contains one or more premature stops and/or frameshifts
5596329	taurine import ATP-binding protein TauB; this gene contains a frame shift which may be the result of sequencing error
5596003	UDP-N-acetylmuramate--alanine ligase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01082
5596560	hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by glimmer
5595825	50S ribosomal protein L14; this gene contains a frame shift which may be the result of sequencing error
5596060	amidase; identified by match to protein family HMM PF01425; match to protein family HMM TIGR00132
5597249	isoleucyl-tRNA synthetase; identified by match to protein family HMM PF00133; match to protein family HMM PF06827; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00392
5597028	lactoylglutathione lyase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00106; match to protein family HMM PF08659
5596447	ThiS family; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02597
5596022	acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00132; match to protein family HMM TIGR01852
5596129	histidine kinase homolog; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
5595581	histidine kinase homolog; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02447; match to protein family HMM PF03600
5596797	rubrerythrin; identified by match to protein family HMM PF02719
5595918	hydrogenase-4 component F; identified by match to protein family HMM PF01973
5595702	disulfide bond formation protein DsbB; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF02600
5595649	tonB-dependent receptor, degenerate; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00593
5597466	4Fe-4S binding domain protein; identified by match to protein family HMM PF00037
5597062	transporter small conductance mechanosensitive ion channel (MscS) family; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00924
5596203	formate dehydrogenase H (formate-hydrogen-lyase-linked,selenocysteine-containing polypeptide; formate dehydrogenase-H alphasubunit; FDH-H); this gene contains a premature stop which may be the result of sequencing error
5596524	conserved hypothetical protein
5597510	type I secretion target ggxgxdxxx repeat (2 copies) domain protein; identified by match to protein family HMM PF00353
5596087	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
5595709	peptide ABC transporter ATP-binding protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF08238
5596477	selenide, water dikinase (Selenophosphate synthetase; Selenium donor protein); this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08269