-- dump date   	20140619_021306
-- class       	Genbank::Gene
-- table       	gene_note
-- id	note
5406377	flavocytochrome c flavin subunit; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01227; match to protein family HMM TIGR03139
5406141	2,5-diketo-d-gluconic acid reductase a (2,5-dkgreductase a) (2,5-dkgr a) (25dkgr-a) (akr5c); this gene contains a premature stop which may be the result of sequencing error
5407262	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
5407794	clavaldehyde dehydrogenase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00106; match to protein family HMM PF08659
5407221	short chain dehydrogenase; this gene contains a premature stop which may be the result of sequencing error
5406393	anaerobic ribonucleoside-triphosphate reductase; this region contains one or more premature stops and/or frameshifts
5407004	transketolase A; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00004
5407883	transketolase A; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
5406476	putative type I specificity subunit HsdS; identified by match to protein family HMM PF03264
5407657	flavocytochrome c heme subunit; this gene contains a frame shift which may be the result of sequencing error
5406725	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; identified by match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM TIGR01409; match to protein family HMM TIGR01813
5407109	flavocytochrome c flavin subunit; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00890; match to protein family HMM TIGR01409
5406329	flavocytochrome c flavin subunit; this gene contains a frame shift which may be the result of sequencing error
5406710	NADP-dependent malic enzyme; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00004
5406478	transcriptional regulator, Crp/Fnr family protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00325
5407497	SubB; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00501
5406080	RND efflux system, outer membrane lipoprotein CmeC; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
5406310	aspartate ammonia-lyase (Aspartase); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00593; match to protein family HMM PF07715
5407068	Hsp12 variant C; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02021
5406499	flavocytochrome c flavin subunit; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00884
5407295	restriction and modification enzyme CjeI; this gene contains a frame shift which may be the result of sequencing error
5406399	60 kDa chaperonin (Protein Cpn60) (groEL protein); this gene contains a frame shift which may be the result of sequencing error
5405884	response regulator receiver domain protein; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00072; match to protein family HMM PF00486
5407385	translation initiation factor IF-3; identified by match to protein family HMM PF07690
5405937	ferric receptor CfrA; this region contains one or more premature stops and/or frameshifts
5406601	ferric receptor CfrA; this region contains one or more premature stops and/or frameshifts
5407260	hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by glimmer; putative
5406555	3-oxoacyl-[acyl-carrier-protein] synthase 2; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150
5407288	transporter, LysE family; this gene contains a frame shift which may be the result of sequencing error
5407088	hydroxylamine oxidoreductase; identified by match to protein family HMM PF01755
5407655	protein YfcK; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00892
5406272	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF04237
5406777	formate dehydrogenase subunit A; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254
5406305	iron-sulfur cluster-binding domain protein; this gene contains a frame shift which may be the result of sequencing error
5406775	chaperone protein DnaJ; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00226; match to protein family HMM PF00684
5406026	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
5407821	methyl-accepting chemotaxis protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00266
5407818	oxygen-independent coproporphyrinogen III oxidase; this gene contains a frame shift which may be the result of sequencing error
5407454	protein YfcK; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF01266; match to protein family HMM PF05430; match to protein family HMM TIGR03197
5406892	glycerol-3-phosphate transporter (G-3-P transporter) (G-3-P permease); this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091
5407808	fibronectin type III domain protein; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00041
5406493	regulatory protein UhpC; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00041
5406851	aspartyl-tRNA synthetase; identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459
5406511	putative RecF/RecN/SMC N domain; identified by match to protein family HMM PF02463
5406953	sulfatase; identified by match to protein family HMM PF00583
5406129	glutamate-1-semialdehyde 2,1-aminomutase (GSA)(Glutamate-1-semialdehyde aminotransferase) (GSA-AT); identified by match to protein family HMM PF00384; match to protein family HMM PF01568
5407421	formate dehydrogenase H (Formate-hydrogen-lyase-linked,selenocysteine-containing polypeptide) (Formate dehydrogenase-H alphasubunit) (FDH-H); this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF04879
5406318	sensor histidine kinase
5407337	NAD-dependent malic enzyme (NAD-ME); this region contains one or more premature stops and/or frameshifts
5407030	NAD-dependent malic enzyme (NAD-ME); this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF03949
5406696	probable NAD-dependent malic enzyme 3 (NAD-ME 3); this gene contains a premature stop which may be the result of sequencing error
5406335	the start codon is not identified. truncated copper-binding protein cuta contains interpro domain; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03091
5407670	restriction and modification enzyme CjeI; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00588
5407836	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
5406781	di-trans,poly-cis-decaprenylcistransferase; identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055
5406952	chaperone DnaJ; identified by match to protein family HMM PF00873
5406153	phosphoenolpyruvate carboxykinase [ATP] (pepcarboxykinase) (phosphoenolpyruvate carboxylase) (pepck)
5406292	putative aminotransferase B; identified by match to protein family HMM PF05935
5407419	putative truncated ferric siderophore receptor; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF07715
5406726	conserved hypothetical protein; this gene contains a frame shift which may be the result of sequencing error
5406552	hypothetical protein; this gene contains a frame shift which may be the result of sequencing error; identified by glimmer; putative
5407094	histidyl-tRNA synthetase; identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442
5407543	arginine decarboxylase; identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01273
5407863	putative acetyltransferase; identified by match to protein family HMM PF00155
5407407	thiamine biosynthesis protein ThiF; identified by match to protein family HMM PF00899; match to protein family HMM TIGR02354
5407672	mechanosensitive ion channel family protein; identified by match to protein family HMM PF02754
5407664	monomeric isocitrate dehydrogenase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF03971
5406890	homoserine kinase (HSK) (HK); this gene contains a frame shift which may be the result of sequencing error
5407006	heat shock protein HslVU, ATPase subunit HslU; identified by match to protein family HMM PF07724; match to protein family HMM TIGR00390
5406423	3-deoxy-7-phosphoheptulonate synthase; identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358
5405938	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
5406597	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
5406936	conserved hypothetical protein; this gene contains a premature stop which may be the result of sequencing error
5407199	replicative DNA helicase; identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665
5406758	phosphatidylserine decarboxylase proenzyme
5407599	putative beta-lactamase HcpD (Cysteine-richprotein D) (PBP 4) (Penicillin-binding protein 4); this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF07719; match to protein family HMM PF08238
5407261	ribulose-phosphate 3-epimerase; identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163
5407331	ferrochelatase; identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109
5406673	endonuclease/exonuclease/phosphatase; this gene contains a frame shift which may be the result of sequencing error
5407240	flavocytochrome c flavin subunit; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00890
5406422	flavocytochrome c flavin subunit; this region contains one or more premature stops and/or frameshifts
5407535	beta-lactamase HcpA (Cysteine-rich 28 kDaprotein); this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF08238
5407850	tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA pseudouridylate synthase I); identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662
5406992	thiamine biosynthesis protein ThiC; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01964; match to protein family HMM TIGR00190
5406750	DNA-directed RNA polymerase, beta' subunit; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386
5407230	putative GTPase of unknown function subfamily; identified by match to protein family HMM PF00350; match to protein family HMM PF01926
5407557	prophage protein gp49; this gene contains a premature stop which may be the result of sequencing error
5407318	transcriptional regulator, marr family/acetyl transferase, gnat family; this gene contains a frame shift which may be the result of sequencing error
5407687	TPR repeat protein; this gene contains a frame shift which may be the result of sequencing error
5407254	putative exported protein; this gene contains a frame shift which may be the result of sequencing error
5406741	flagellar protein FliL
5407319	homoserine kinase; identified by match to protein family HMM PF00288; match to protein family HMM TIGR00191
5406722	beta-lactamase; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00144
5407021	6-aminohexanoate-dimer hydrolase; this gene contains a frame shift which may be the result of sequencing error
5406119	flagellar biosynthetic protein FlhB; this gene contains a frame shift which may be the result of sequencing error
5407075	selenide, water dikinase; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF02769; match to protein family HMM TIGR00476
5406098	molybdopterin converting factor, subunit 2; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF02391
5406727	transporter, LysE family; this gene contains a frame shift which may be the result of sequencing error
5407540	CmeA
5407284	selenide, water dikinase (Selenophosphate synthetase)(Selenium donor protein); this gene contains a premature stop which may be the result of sequencing error
5407679	formate dehydrogenase; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF04879; match to protein family HMM TIGR01409
5407286	acetyl-CoA carboxylase, biotin carboxylase; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00289; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514
5407694	acetyl-CoA carboxylase, biotin carboxyl carrier protein; this region contains one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531
5406142	methyl-accepting chemotaxis protein TlpB; this gene contains a premature stop which may be the result of sequencing error; identified by match to protein family HMM PF00015
5406479	chaperone ClpB 1; identified by match to protein family HMM PF00005
5406425	beta ketoacyl-acyl carrier protein synthase II; identified by match to protein family HMM PF00583
5407845	anaerobic C4-dicarboxylate transporter DcuA; identified by match to protein family HMM PF08238
5407392	Sel1 repeat family; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF08238
5406363	glycerol-3-phosphate transporter (G-3-P transporter) (G-3-P permease); this gene contains a premature stop which may be the result of sequencing error
5406229	glycerol-3-phosphate transporter; this gene contains a premature stop which may be the result of sequencing error
5406167	phosphoglycerate transporter protein PgtP; this gene contains a premature stop which may be the result of sequencing error
5405883	ferric receptor CfrA; this gene contains a frame shift which may be the result of sequencing error
5406760	methionine aminopeptidase, type I; identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500
5407358	preprotein translocase, SecY subunit; identified by match to protein family HMM PF00344; match to protein family HMM TIGR00967
5406409	ribosomal protein S19; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00203; match to protein family HMM TIGR01050
5406659	arginine/ornithine transport ATP-binding protein AotP; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM PF00005
5405941	glutamine transport ATP-binding protein GlnQ; this gene contains a frame shift which may be the result of sequencing error
5407750	putative anaerobiC dmso reductase chain c anchor subunit; this gene contains a frame shift which may be the result of sequencing error
5406291	C4-dicarboxylate-binding periplasmic protein; identified by match to protein family HMM PF04055