-- dump date 20140619_021341 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_891211.1 118474813 4538124 1..1311 1 NC_008599.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1311 dnaA 4538124 dnaA Campylobacter fetus subsp. fetus 82-40 chromosomal replication initiation protein YP_891211.1 1 D 360106 CDS YP_891212.1 118475405 4538203 1449..2519 1 NC_008599.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2519 dnaN 4538203 dnaN Campylobacter fetus subsp. fetus 82-40 DNA polymerase III subunit beta YP_891212.1 1449 D 360106 CDS YP_891213.1 118474635 4539301 2528..4849 1 NC_008599.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4849 gyrB 4539301 gyrB Campylobacter fetus subsp. fetus 82-40 DNA gyrase subunit B YP_891213.1 2528 D 360106 CDS YP_891214.1 118475336 4538617 4849..6231 1 NC_008599.1 identified by match to protein family HMM PF00563; diguanylate cyclase/phosphodiesterase 6231 4538617 CFF8240_0004 Campylobacter fetus subsp. fetus 82-40 diguanylate cyclase/phosphodiesterase YP_891214.1 4849 D 360106 CDS YP_891215.1 118475406 4538204 6234..6674 1 NC_008599.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 6674 queF 4538204 queF Campylobacter fetus subsp. fetus 82-40 7-cyano-7-deazaguanine reductase YP_891215.1 6234 D 360106 CDS YP_891216.1 118474660 4539408 6684..7904 1 NC_008599.1 hydrolase 7904 4539408 CFF8240_0006 Campylobacter fetus subsp. fetus 82-40 hydrolase YP_891216.1 6684 D 360106 CDS YP_891217.1 118474423 4537807 8055..8477 1 NC_008599.1 hypothetical protein 8477 4537807 CFF8240_0007 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891217.1 8055 D 360106 CDS YP_891218.1 118474252 4537886 complement(8478..10118) 1 NC_008599.1 identified by match to protein family HMM PF06429; flagellar hook protein 10118 4537886 CFF8240_0008 Campylobacter fetus subsp. fetus 82-40 flagellar hook protein YP_891218.1 8478 R 360106 CDS YP_891219.1 118475635 4538668 complement(10115..10906) 1 NC_008599.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 10906 flgD 4538668 flgD Campylobacter fetus subsp. fetus 82-40 flagellar basal body rod modification protein YP_891219.1 10115 R 360106 CDS YP_891220.1 118474297 4538995 complement(10964..12565) 1 NC_008599.1 hypothetical protein 12565 4538995 CFF8240_0010 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891220.1 10964 R 360106 CDS YP_891221.1 118474563 4538092 12725..13927 1 NC_008599.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter 13927 4538092 CFF8240_0011 Campylobacter fetus subsp. fetus 82-40 Bcr/CflA subfamily drug resistance transporter YP_891221.1 12725 D 360106 CDS YP_891222.1 118474098 4537911 13920..14054 1 NC_008599.1 hypothetical protein 14054 4537911 CFF8240_0012 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891222.1 13920 D 360106 CDS YP_891223.1 118474951 4537988 14014..15822 1 NC_008599.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA/BipA 15822 typA 4537988 typA Campylobacter fetus subsp. fetus 82-40 GTP-binding protein TypA/BipA YP_891223.1 14014 D 360106 CDS YP_891224.1 118475627 4538292 15822..16505 1 NC_008599.1 hypothetical protein 16505 4538292 CFF8240_0014 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891224.1 15822 D 360106 CDS YP_891225.1 118474655 4539403 complement(16546..17607) 1 NC_008599.1 putative helix-turn-helix containsing protein 17607 4539403 CFF8240_0015 Campylobacter fetus subsp. fetus 82-40 putative helix-turn-helix containsing protein YP_891225.1 16546 R 360106 CDS YP_891226.1 118475400 4538877 complement(17615..18184) 1 NC_008599.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 18184 rnhB 4538877 rnhB Campylobacter fetus subsp. fetus 82-40 ribonuclease HII YP_891226.1 17615 R 360106 CDS YP_891227.1 118475138 4539200 complement(18177..19154) 1 NC_008599.1 identified by match to protein family HMM PF04332; hypothetical protein 19154 4539200 CFF8240_0017 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891227.1 18177 R 360106 CDS YP_891228.1 118474259 4537967 19281..20240 1 NC_008599.1 identified by match to protein family HMM PF00005; ferric cations import ATP-binding protein FbpC 1 20240 4537967 CFF8240_0018 Campylobacter fetus subsp. fetus 82-40 ferric cations import ATP-binding protein FbpC 1 YP_891228.1 19281 D 360106 CDS YP_891229.1 118474901 4539056 complement(20250..20879) 1 NC_008599.1 Hsp12 variant C 20879 4539056 CFF8240_0019 Campylobacter fetus subsp. fetus 82-40 Hsp12 variant C YP_891229.1 20250 R 360106 CDS YP_891230.1 118474270 4537979 complement(21001..21945) 1 NC_008599.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 21945 4537979 CFF8240_0020 Campylobacter fetus subsp. fetus 82-40 cation efflux family protein YP_891230.1 21001 R 360106 CDS YP_891231.1 118474565 4538094 22265..24334 1 NC_008599.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 24334 nrdD 4538094 nrdD Campylobacter fetus subsp. fetus 82-40 anaerobic ribonucleoside triphosphate reductase YP_891231.1 22265 D 360106 CDS YP_891232.1 118474748 4538774 24547..25911 1 NC_008599.1 identified by match to protein family HMM PF04095; putative nicotinate phosphoribosyltransferase 25911 4538774 CFF8240_0022 Campylobacter fetus subsp. fetus 82-40 putative nicotinate phosphoribosyltransferase YP_891232.1 24547 D 360106 CDS YP_891233.1 118474776 4539415 25922..26083 1 NC_008599.1 hypothetical protein 26083 4539415 CFF8240_0023 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891233.1 25922 D 360106 CDS YP_891234.1 118475730 4538339 26077..26748 1 NC_008599.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495; anaerobic ribonucleoside-triphosphate reductase activating protein 26748 4538339 CFF8240_0024 Campylobacter fetus subsp. fetus 82-40 anaerobic ribonucleoside-triphosphate reductase activating protein YP_891234.1 26077 D 360106 CDS YP_891235.1 118474544 4538073 complement(26797..27345) 1 NC_008599.1 identified by match to protein family HMM PF03498; cytolethal distending toxin A/C family protein 27345 4538073 CFF8240_0025 Campylobacter fetus subsp. fetus 82-40 cytolethal distending toxin A/C family protein YP_891235.1 26797 R 360106 CDS YP_891236.1 118474325 4538857 complement(27345..28145) 1 NC_008599.1 identified by match to protein family HMM PF03372; cytolethal distending toxin 28145 4538857 CFF8240_0026 Campylobacter fetus subsp. fetus 82-40 cytolethal distending toxin YP_891236.1 27345 R 360106 CDS YP_891237.1 118475240 4538404 complement(28154..28975) 1 NC_008599.1 identified by match to protein family HMM PF03498; cytolethal distending toxin A 28975 4538404 CFF8240_0027 Campylobacter fetus subsp. fetus 82-40 cytolethal distending toxin A YP_891237.1 28154 R 360106 CDS YP_891238.1 118474144 4538030 complement(29351..29839) 1 NC_008599.1 identified by match to protein family HMM TIGR02532; putative transformation system protein 29839 4538030 CFF8240_0028 Campylobacter fetus subsp. fetus 82-40 putative transformation system protein YP_891238.1 29351 R 360106 CDS YP_891239.1 118474076 4538739 30007..31029 1 NC_008599.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 31029 nrdF 4538739 nrdF Campylobacter fetus subsp. fetus 82-40 ribonucleotide-diphosphate reductase subunit beta YP_891239.1 30007 D 360106 CDS YP_891240.1 118474993 4539518 31019..31681 1 NC_008599.1 identified by match to protein family HMM PF00795; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 31681 4539518 CFF8240_0030 Campylobacter fetus subsp. fetus 82-40 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_891240.1 31019 D 360106 CDS YP_891241.1 118475384 4538492 31739..32368 1 NC_008599.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 32368 pcm 4538492 pcm Campylobacter fetus subsp. fetus 82-40 protein-L-isoaspartate O-methyltransferase YP_891241.1 31739 D 360106 CDS YP_891242.1 118474751 4538777 32443..33093 1 NC_008599.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase 33093 4538777 CFF8240_0032 Campylobacter fetus subsp. fetus 82-40 superoxide dismutase YP_891242.1 32443 D 360106 CDS YP_891243.1 118475131 4539330 33549..33860 1 NC_008599.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 33860 rpsJ 4539330 rpsJ Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S10 YP_891243.1 33549 D 360106 CDS YP_891244.1 118474609 4538119 33879..34457 1 NC_008599.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 34457 rplC 4538119 rplC Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L3 YP_891244.1 33879 D 360106 CDS YP_891245.1 118474924 4538946 34454..35068 1 NC_008599.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 35068 rplD 4538946 rplD Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L4 YP_891245.1 34454 D 360106 CDS YP_891246.1 118474455 4539078 35071..35352 1 NC_008599.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 35352 rplW 4539078 rplW Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L23 YP_891246.1 35071 D 360106 CDS YP_891247.1 118474857 4538306 35354..36184 1 NC_008599.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 36184 rplB 4538306 rplB Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L2 YP_891247.1 35354 D 360106 CDS YP_891248.1 118474223 4538268 36187..36468 1 NC_008599.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 36468 rpsS 4538268 rpsS Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S19 YP_891248.1 36187 D 360106 CDS YP_891249.1 118475310 4539376 36478..36810 1 NC_008599.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 36810 rplV 4539376 rplV Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L22 YP_891249.1 36478 D 360106 CDS YP_891250.1 118474301 4538999 36812..37510 1 NC_008599.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 37510 rpsC 4538999 rpsC Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S3 YP_891250.1 36812 D 360106 CDS YP_891251.1 118475204 4538249 37513..37938 1 NC_008599.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 37938 rplP 4538249 rplP Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L16 YP_891251.1 37513 D 360106 CDS YP_891252.1 118474438 4538984 37925..38110 1 NC_008599.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 38110 rpmC 4538984 rpmC Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L29 YP_891252.1 37925 D 360106 CDS YP_891253.1 118475461 4538571 38121..38378 1 NC_008599.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 38378 rpsQ 4538571 rpsQ Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S17 YP_891253.1 38121 D 360106 CDS YP_891254.1 118475201 4538246 38378..38746 1 NC_008599.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 38746 rplN 4538246 rplN Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L14 YP_891254.1 38378 D 360106 CDS YP_891255.1 118475687 4538508 38746..38979 1 NC_008599.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 38979 rplX 4538508 rplX Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L24 YP_891255.1 38746 D 360106 CDS YP_891256.1 118474581 4538694 38982..39524 1 NC_008599.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 39524 rplE 4538694 rplE Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L5 YP_891256.1 38982 D 360106 CDS YP_891257.1 118474752 4538778 39526..39711 1 NC_008599.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 39711 rpsN 4538778 rpsN Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S14 YP_891257.1 39526 D 360106 CDS YP_891258.1 118475769 4539031 39722..40117 1 NC_008599.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 40117 rpsH 4539031 rpsH Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S8 YP_891258.1 39722 D 360106 CDS YP_891259.1 118475079 4538164 40239..40775 1 NC_008599.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 40775 rplF 4538164 rplF Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L6 YP_891259.1 40239 D 360106 CDS YP_891260.1 118475606 4539502 40785..41141 1 NC_008599.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 41141 rplR 4539502 rplR Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L18 YP_891260.1 40785 D 360106 CDS YP_891261.1 118475155 4539217 41156..41599 1 NC_008599.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 41599 rpsE 4539217 rpsE Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S5 YP_891261.1 41156 D 360106 CDS YP_891262.1 118474217 4538262 41609..42010 1 NC_008599.1 late assembly protein; 50S ribosomal protein L15 42010 rplO 4538262 rplO Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L15 YP_891262.1 41609 D 360106 CDS YP_891263.1 118474381 4538926 42010..43272 1 NC_008599.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 43272 secY 4538926 secY Campylobacter fetus subsp. fetus 82-40 preprotein translocase subunit SecY YP_891263.1 42010 D 360106 CDS YP_891264.1 118475152 4539214 43274..44032 1 NC_008599.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 44032 map 4539214 map Campylobacter fetus subsp. fetus 82-40 methionine aminopeptidase YP_891264.1 43274 D 360106 CDS YP_891265.1 118474616 4538594 44281..44499 1 NC_008599.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 44499 infA 4538594 infA Campylobacter fetus subsp. fetus 82-40 translation initiation factor IF-1 YP_891265.1 44281 D 360106 CDS YP_891266.1 118475454 4539230 44776..45144 1 NC_008599.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 45144 rpsM 4539230 rpsM Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S13 YP_891266.1 44776 D 360106 CDS YP_891267.1 118474117 4538666 45154..45546 1 NC_008599.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 45546 rpsK 4538666 rpsK Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S11 YP_891267.1 45154 D 360106 CDS YP_891268.1 118474712 4539269 45574..46200 1 NC_008599.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 46200 rpsD 4539269 rpsD Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S4 YP_891268.1 45574 D 360106 CDS YP_891269.1 118475267 4539118 46213..47211 1 NC_008599.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 47211 rpoA 4539118 rpoA Campylobacter fetus subsp. fetus 82-40 DNA-directed RNA polymerase subunit alpha YP_891269.1 46213 D 360106 CDS YP_891270.1 118474282 4539463 47230..47586 1 NC_008599.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 47586 rplQ 4539463 rplQ Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L17 YP_891270.1 47230 D 360106 CDS YP_891271.1 118475450 4539226 47811..48077 1 NC_008599.1 identified by match to protein family HMM PF01106; NifU family protein 48077 4539226 CFF8240_0061 Campylobacter fetus subsp. fetus 82-40 NifU family protein YP_891271.1 47811 D 360106 CDS YP_891272.1 118474868 4538318 48067..48615 1 NC_008599.1 hypothetical protein 48615 4538318 CFF8240_0062 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891272.1 48067 D 360106 CDS YP_891273.1 118475066 4538810 48596..49885 1 NC_008599.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 49885 murE 4538810 murE Campylobacter fetus subsp. fetus 82-40 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_891273.1 48596 D 360106 CDS YP_891274.1 118474436 4538981 49905..50252 1 NC_008599.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 50252 panD 4538981 panD Campylobacter fetus subsp. fetus 82-40 aspartate alpha-decarboxylase YP_891274.1 49905 D 360106 CDS YP_891275.1 118474988 4539513 50740..52386 1 NC_008599.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 52386 4539513 CFF8240_0065 Campylobacter fetus subsp. fetus 82-40 methyl-accepting chemotaxis protein YP_891275.1 50740 D 360106 CDS YP_891276.1 118474266 4537975 52452..52763 1 NC_008599.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 52763 4537975 CFF8240_0066 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891276.1 52452 D 360106 CDS YP_891277.1 118474184 4537757 52765..53841 1 NC_008599.1 PDZ domain-containing protein 53841 4537757 CFF8240_0067 Campylobacter fetus subsp. fetus 82-40 PDZ domain-containing protein YP_891277.1 52765 D 360106 CDS YP_891278.1 118475576 4539237 53838..54671 1 NC_008599.1 identified by match to protein family HMM PF00348; geranyltranstransferase 54671 4539237 CFF8240_0068 Campylobacter fetus subsp. fetus 82-40 geranyltranstransferase YP_891278.1 53838 D 360106 CDS YP_891279.1 118475100 4539436 54677..56578 1 NC_008599.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 56578 tkt 4539436 tkt Campylobacter fetus subsp. fetus 82-40 transketolase YP_891279.1 54677 D 360106 CDS YP_891280.1 118474863 4538313 56727..58175 1 NC_008599.1 NAD-linked; aldehyde dehydrogenase A 58175 4538313 CFF8240_0070 Campylobacter fetus subsp. fetus 82-40 aldehyde dehydrogenase A YP_891280.1 56727 D 360106 CDS YP_891281.1 118475652 4538685 complement(58286..58486) 1 NC_008599.1 identified by match to protein family HMM PF04328; hypothetical protein 58486 4538685 CFF8240_0071 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891281.1 58286 R 360106 CDS YP_891282.1 118475482 4538361 complement(58470..60548) 1 NC_008599.1 identified by match to protein family HMM PF02554; carbon starvation protein A 60548 4538361 CFF8240_0072 Campylobacter fetus subsp. fetus 82-40 carbon starvation protein A YP_891282.1 58470 R 360106 CDS YP_891283.1 118474422 4537806 60741..60941 1 NC_008599.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 60941 thiS 4537806 thiS Campylobacter fetus subsp. fetus 82-40 thiamine biosynthesis protein ThiS YP_891283.1 60741 D 360106 CDS YP_891284.1 118475169 4537782 61168..61881 1 NC_008599.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 61881 thiF 4537782 thiF Campylobacter fetus subsp. fetus 82-40 thiamine biosynthesis protein ThiF YP_891284.1 61168 D 360106 CDS YP_891285.1 118474167 4539094 61874..62635 1 NC_008599.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 62635 thiG 4539094 thiG Campylobacter fetus subsp. fetus 82-40 thiazole synthase YP_891285.1 61874 D 360106 CDS YP_891286.1 118474071 4538734 62657..63817 1 NC_008599.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 63817 thiH 4538734 thiH Campylobacter fetus subsp. fetus 82-40 thiamine biosynthesis protein ThiH YP_891286.1 62657 D 360106 CDS YP_891287.1 118475029 4538425 complement(63867..64484) 1 NC_008599.1 identified by match to protein family HMM PF01205; hypothetical protein 64484 4538425 CFF8240_0077 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891287.1 63867 R 360106 CDS YP_891288.1 118474242 4537875 64560..65390 1 NC_008599.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 65390 galU 4537875 galU Campylobacter fetus subsp. fetus 82-40 UTP-glucose-1-phosphate uridylyltransferase YP_891288.1 64560 D 360106 CDS YP_891289.1 118474952 4537989 65377..66582 1 NC_008599.1 catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate isomerase 66582 pgi 4537989 pgi Campylobacter fetus subsp. fetus 82-40 glucose-6-phosphate isomerase YP_891289.1 65377 D 360106 CDS YP_891290.1 118475381 4538489 66787..67224 1 NC_008599.1 identified by match to protein family HMM PF00210; starvation-inducible DNA-binding protein Dps 67224 4538489 CFF8240_0080 Campylobacter fetus subsp. fetus 82-40 starvation-inducible DNA-binding protein Dps YP_891290.1 66787 D 360106 CDS YP_891291.1 118475197 4538242 complement(67285..67851) 1 NC_008599.1 identified by match to protein family HMM PF04264; YceI protein 67851 4538242 CFF8240_0081 Campylobacter fetus subsp. fetus 82-40 YceI protein YP_891291.1 67285 R 360106 CDS YP_891292.1 118474631 4539297 complement(68014..68394) 1 NC_008599.1 HIT family protein 68394 4539297 CFF8240_0082 Campylobacter fetus subsp. fetus 82-40 HIT family protein YP_891292.1 68014 R 360106 CDS YP_891293.1 118475385 4538493 complement(68391..69002) 1 NC_008599.1 identified by match to protein family HMM TIGR00347; dethiobiotin synthase 69002 bioD 4538493 bioD Campylobacter fetus subsp. fetus 82-40 dethiobiotin synthase YP_891293.1 68391 R 360106 CDS YP_891294.1 118474058 4537981 complement(68999..69688) 1 NC_008599.1 putative biotin synthesis protein 69688 4537981 CFF8240_0084 Campylobacter fetus subsp. fetus 82-40 putative biotin synthesis protein YP_891294.1 68999 R 360106 CDS YP_891295.1 118475704 4539021 complement(69678..70292) 1 NC_008599.1 identified by match to protein family HMM PF04301; hypothetical protein 70292 4539021 CFF8240_0085 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891295.1 69678 R 360106 CDS YP_891296.1 118474862 4538312 complement(70273..71379) 1 NC_008599.1 identified by match to protein family HMM PF00155; 8-amino-7-oxononanoate synthase 71379 4538312 CFF8240_0086 Campylobacter fetus subsp. fetus 82-40 8-amino-7-oxononanoate synthase YP_891296.1 70273 R 360106 CDS YP_891297.1 118475568 4538447 71548..71970 1 NC_008599.1 hypothetical protein 71970 4538447 CFF8240_0087 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891297.1 71548 D 360106 CDS YP_891298.1 118475686 4538507 71949..72767 1 NC_008599.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 72767 thiL 4538507 thiL Campylobacter fetus subsp. fetus 82-40 thiamine monophosphate kinase YP_891298.1 71949 D 360106 CDS YP_891299.1 118474715 4539272 72745..73878 1 NC_008599.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 73878 truD 4539272 truD Campylobacter fetus subsp. fetus 82-40 tRNA pseudouridine synthase D YP_891299.1 72745 D 360106 CDS YP_891300.1 118474193 4537766 complement(74353..74538) 1 NC_008599.1 hypothetical protein 74538 4537766 CFF8240_0090 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891300.1 74353 R 360106 CDS YP_891301.1 118474829 4538140 complement(74552..74941) 1 NC_008599.1 flagellin specific chaperone; flagellar protein FliS 74941 fliS 4538140 fliS Campylobacter fetus subsp. fetus 82-40 flagellar protein FliS YP_891301.1 74552 R 360106 CDS YP_891302.1 118474377 4538921 complement(74952..76775) 1 NC_008599.1 Also called hook-associated protein 2; involved in flagellin assembly; flagellar capping protein 76775 4538921 CFF8240_0092 Campylobacter fetus subsp. fetus 82-40 flagellar capping protein YP_891302.1 74952 R 360106 CDS YP_891303.1 118475281 4539132 complement(76779..77159) 1 NC_008599.1 possibly involved in flagella export; flagellar protein FlaG 77159 4539132 CFF8240_0093 Campylobacter fetus subsp. fetus 82-40 flagellar protein FlaG YP_891303.1 76779 R 360106 CDS YP_891304.1 118474478 4537960 77281..77628 1 NC_008599.1 hypothetical protein 77628 4537960 CFF8240_0094 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891304.1 77281 D 360106 CDS YP_891305.1 118475452 4539228 77612..78193 1 NC_008599.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; putative methyltransferase 78193 4539228 CFF8240_0095 Campylobacter fetus subsp. fetus 82-40 putative methyltransferase YP_891305.1 77612 D 360106 CDS YP_891306.1 118475075 4538820 78255..79304 1 NC_008599.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 79304 flgI 4538820 flgI Campylobacter fetus subsp. fetus 82-40 flagellar basal body P-ring protein YP_891306.1 78255 D 360106 CDS YP_891307.1 118475721 4538755 79305..79604 1 NC_008599.1 hypothetical protein 79604 4538755 CFF8240_0097 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891307.1 79305 D 360106 CDS YP_891308.1 118475047 4538791 79661..79864 1 NC_008599.1 hypothetical protein 79864 4538791 CFF8240_0098 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891308.1 79661 D 360106 CDS YP_891309.1 118474060 4537983 79904..80338 1 NC_008599.1 hypothetical protein 80338 4537983 CFF8240_0099 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891309.1 79904 D 360106 CDS YP_891310.1 118474675 4539559 80340..82193 1 NC_008599.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 82193 flgK 4539559 flgK Campylobacter fetus subsp. fetus 82-40 flagellar hook-associated protein FlgK YP_891310.1 80340 D 360106 CDS YP_891311.1 118475628 4538293 82196..82972 1 NC_008599.1 identified by match to protein family HMM TIGR02757; hypothetical protein 82972 4538293 CFF8240_0101 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891311.1 82196 D 360106 CDS YP_891312.1 118475128 4539327 83046..84413 1 NC_008599.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 84413 4539327 CFF8240_0102 Campylobacter fetus subsp. fetus 82-40 phosphomannomutase YP_891312.1 83046 D 360106 CDS YP_891313.1 118475437 4539350 84410..85744 1 NC_008599.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 85744 4539350 CFF8240_0103 Campylobacter fetus subsp. fetus 82-40 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_891313.1 84410 D 360106 CDS YP_891314.1 118474384 4538929 85744..86415 1 NC_008599.1 identified by match to protein family HMM PF02568; match to protein family HMM PF06508; match to protein family HMM TIGR00364; ExsB protein 86415 4538929 CFF8240_0104 Campylobacter fetus subsp. fetus 82-40 ExsB protein YP_891314.1 85744 D 360106 CDS YP_891315.1 118475123 4539322 86508..87797 1 NC_008599.1 charges one glutamine molecule and pairs it with tRNA(Gln); glutamylglutaminyl-tRNA synthetase 87797 gltX 4539322 gltX Campylobacter fetus subsp. fetus 82-40 glutamylglutaminyl-tRNA synthetase YP_891315.1 86508 D 360106 CDS YP_891316.1 118474746 4538772 87794..88093 1 NC_008599.1 identified by match to protein family HMM PF02325; yggt family protein 88093 4538772 CFF8240_0106 Campylobacter fetus subsp. fetus 82-40 yggt family protein YP_891316.1 87794 D 360106 CDS YP_891317.1 118475611 4539507 88122..89744 1 NC_008599.1 identified by match to protein family HMM PF01464; lytic murein transglycosylase 89744 4539507 CFF8240_0107 Campylobacter fetus subsp. fetus 82-40 lytic murein transglycosylase YP_891317.1 88122 D 360106 CDS YP_891318.1 118474607 4538117 90318..90635 1 NC_008599.1 hypothetical protein 90635 4538117 CFF8240_0108 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891318.1 90318 D 360106 CDS YP_891319.1 118475353 4538460 90632..91330 1 NC_008599.1 hypothetical protein 91330 4538460 CFF8240_0109 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891319.1 90632 D 360106 CDS YP_891320.1 118474976 4537857 91330..91818 1 NC_008599.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 91818 4537857 CFF8240_0110 Campylobacter fetus subsp. fetus 82-40 flavodoxin FldA YP_891320.1 91330 D 360106 CDS YP_891321.1 118475760 4538193 91927..92427 1 NC_008599.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 92427 luxS 4538193 luxS Campylobacter fetus subsp. fetus 82-40 S-ribosylhomocysteinase YP_891321.1 91927 D 360106 CDS YP_891322.1 118475295 4539534 complement(92510..93208) 1 NC_008599.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 93208 ung 4539534 ung Campylobacter fetus subsp. fetus 82-40 uracil-DNA glycosylase YP_891322.1 92510 R 360106 CDS YP_891323.1 118474595 4538105 complement(93248..93601) 1 NC_008599.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 93601 rplT 4538105 rplT Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L20 YP_891323.1 93248 R 360106 CDS YP_891324.1 118475088 4538173 complement(93688..93879) 1 NC_008599.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 93879 rpmI 4538173 rpmI Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L35 YP_891324.1 93688 R 360106 CDS YP_891325.1 118474194 4537767 94054..95061 1 NC_008599.1 identified by match to protein family HMM PF01547; iron ABC transporter periplasmic iron-binding protein 95061 4537767 CFF8240_0115 Campylobacter fetus subsp. fetus 82-40 iron ABC transporter periplasmic iron-binding protein YP_891325.1 94054 D 360106 CDS YP_891326.1 118474264 4537973 95062..96618 1 NC_008599.1 identified by match to protein family HMM PF00528; iron ABC transporter permease 96618 4537973 CFF8240_0116 Campylobacter fetus subsp. fetus 82-40 iron ABC transporter permease YP_891326.1 95062 D 360106 CDS YP_891327.1 118475170 4537783 complement(96645..98093) 1 NC_008599.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system, outer membrane lipoprotein CmeC 98093 4537783 CFF8240_0117 Campylobacter fetus subsp. fetus 82-40 RND efflux system, outer membrane lipoprotein CmeC YP_891327.1 96645 R 360106 CDS YP_891328.1 118474846 4538720 complement(98086..101232) 1 NC_008599.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; transmembrane efflux protein 101232 4538720 CFF8240_0118 Campylobacter fetus subsp. fetus 82-40 transmembrane efflux protein YP_891328.1 98086 R 360106 CDS YP_891329.1 118475449 4539225 complement(101232..102353) 1 NC_008599.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; CmeA 102353 4539225 CFF8240_0119 Campylobacter fetus subsp. fetus 82-40 CmeA YP_891329.1 101232 R 360106 CDS YP_891330.1 118474644 4539313 complement(102483..103112) 1 NC_008599.1 identified by match to protein family HMM PF00440; transcription regulator protein 103112 4539313 CFF8240_0120 Campylobacter fetus subsp. fetus 82-40 transcription regulator protein YP_891330.1 102483 R 360106 CDS YP_891331.1 118474306 4539004 complement(103105..104508) 1 NC_008599.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02745; cytochrome c oxidase accessory protein CcoG 104508 ccoG 4539004 ccoG Campylobacter fetus subsp. fetus 82-40 cytochrome c oxidase accessory protein CcoG YP_891331.1 103105 R 360106 CDS YP_891332.1 118474985 4537866 104666..104878 1 NC_008599.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 104878 rpsU 4537866 rpsU Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S21 YP_891332.1 104666 D 360106 CDS YP_891333.1 118474305 4539003 complement(104985..105449) 1 NC_008599.1 hypothetical protein 105449 4539003 CFF8240_0123 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891333.1 104985 R 360106 CDS YP_891334.1 118475533 4538236 complement(105452..105793) 1 NC_008599.1 hypothetical protein 105793 4538236 CFF8240_0124 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891334.1 105452 R 360106 CDS YP_891335.1 118474722 4538535 complement(105790..106605) 1 NC_008599.1 identified by match to protein family HMM PF01058; hydrogenase-Ni,Fe-hydrogenase III small subunit 106605 4538535 CFF8240_0125 Campylobacter fetus subsp. fetus 82-40 hydrogenase-Ni,Fe-hydrogenase III small subunit YP_891335.1 105790 R 360106 CDS YP_891336.1 118474452 4539075 complement(106605..107135) 1 NC_008599.1 electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; formate hydrogenlyase complex iron-sulfur subunit 107135 4539075 CFF8240_0126 Campylobacter fetus subsp. fetus 82-40 formate hydrogenlyase complex iron-sulfur subunit YP_891336.1 106605 R 360106 CDS YP_891337.1 118474557 4538086 complement(107132..108880) 1 NC_008599.1 identified by match to protein family HMM PF00329; match to protein family HMM PF00346; hydrogenase-4 subunit G 108880 4538086 CFF8240_0127 Campylobacter fetus subsp. fetus 82-40 hydrogenase-4 subunit G YP_891337.1 107132 R 360106 CDS YP_891338.1 118475333 4538614 complement(108880..110355) 1 NC_008599.1 identified by match to protein family HMM PF00361; hydrogenase-4 component F 110355 4538614 CFF8240_0128 Campylobacter fetus subsp. fetus 82-40 hydrogenase-4 component F YP_891338.1 108880 R 360106 CDS YP_891339.1 118475529 4538232 110189..110362 1 NC_008599.1 hypothetical protein 110362 4538232 CFF8240_0130 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891339.1 110189 D 360106 CDS YP_891340.1 118474335 4538557 complement(110359..110994) 1 NC_008599.1 interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide; hydrogenase 4 membrane subunit 110994 hyfE 4538557 hyfE Campylobacter fetus subsp. fetus 82-40 hydrogenase 4 membrane subunit YP_891340.1 110359 R 360106 CDS YP_891341.1 118474755 4538781 complement(110996..111916) 1 NC_008599.1 identified by match to protein family HMM PF00146; hydrogenase-4 subunit C 111916 4538781 CFF8240_0131 Campylobacter fetus subsp. fetus 82-40 hydrogenase-4 subunit C YP_891341.1 110996 R 360106 CDS YP_891342.1 118475492 4538371 complement(111917..113869) 1 NC_008599.1 identified by match to protein family HMM PF00361; hydrogenase 4 membrane subunit 113869 4538371 CFF8240_0132 Campylobacter fetus subsp. fetus 82-40 hydrogenase 4 membrane subunit YP_891342.1 111917 R 360106 CDS YP_891343.1 118474328 4538860 complement(113862..114497) 1 NC_008599.1 identified by match to protein family HMM PF00037; hydrogenase-3 small subunit 114497 4538860 CFF8240_0133 Campylobacter fetus subsp. fetus 82-40 hydrogenase-3 small subunit YP_891343.1 113862 R 360106 CDS YP_891344.1 118475224 4539170 115037..116647 1 NC_008599.1 identified by match to protein family HMM PF00221; phenylalanine and histidine ammonia-lyase 116647 4539170 CFF8240_0134 Campylobacter fetus subsp. fetus 82-40 phenylalanine and histidine ammonia-lyase YP_891344.1 115037 D 360106 CDS YP_891345.1 118474111 4538660 116660..117826 1 NC_008599.1 hypothetical protein 117826 4538660 CFF8240_0135 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891345.1 116660 D 360106 CDS YP_891346.1 118475060 4538804 117836..119389 1 NC_008599.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM TIGR01409; match to protein family HMM TIGR01813; flavocytochrome c flavin subunit 119389 4538804 CFF8240_0136 Campylobacter fetus subsp. fetus 82-40 flavocytochrome c flavin subunit YP_891346.1 117836 D 360106 CDS YP_891347.1 118475617 4538282 119383..119775 1 NC_008599.1 fumarate reductase flavoprotein subunit 119775 4538282 CFF8240_0137 Campylobacter fetus subsp. fetus 82-40 fumarate reductase flavoprotein subunit YP_891347.1 119383 D 360106 CDS YP_891348.1 118474713 4539270 119785..120357 1 NC_008599.1 identified by match to protein family HMM PF03264; putative tetraheme cytochrome c 120357 4539270 CFF8240_0138 Campylobacter fetus subsp. fetus 82-40 putative tetraheme cytochrome c YP_891348.1 119785 D 360106 CDS YP_891349.1 118475688 4538509 120366..121985 1 NC_008599.1 identified by match to protein family HMM PF02518; match to protein family HMM PF02743; sensor kinase of two-component regulatory system 121985 4538509 CFF8240_0139 Campylobacter fetus subsp. fetus 82-40 sensor kinase of two-component regulatory system YP_891349.1 120366 D 360106 CDS YP_891350.1 118474558 4538087 121975..122664 1 NC_008599.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two component transcriptional regulator 122664 4538087 CFF8240_0140 Campylobacter fetus subsp. fetus 82-40 two component transcriptional regulator YP_891350.1 121975 D 360106 CDS YP_891351.1 118475586 4539247 123075..123551 1 NC_008599.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 123551 moaC 4539247 moaC Campylobacter fetus subsp. fetus 82-40 molybdenum cofactor biosynthesis protein MoaC YP_891351.1 123075 D 360106 CDS YP_891352.1 118474823 4538134 123544..123807 1 NC_008599.1 hypothetical protein 123807 4538134 CFF8240_0143 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891352.1 123544 D 360106 CDS YP_891353.1 118474930 4538893 123817..124992 1 NC_008599.1 hypothetical protein 124992 4538893 CFF8240_0144 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891353.1 123817 D 360106 CDS YP_891354.1 118474216 4538261 complement(125075..125524) 1 NC_008599.1 identified by match to protein family HMM PF04214; copper amine oxidase N-terminal protein 125524 4538261 CFF8240_0145 Campylobacter fetus subsp. fetus 82-40 copper amine oxidase N-terminal protein YP_891354.1 125075 R 360106 CDS YP_891355.1 118475127 4539326 complement(125622..127295) 1 NC_008599.1 identified by match to protein family HMM PF03605; match to protein family HMM TIGR00770; anaerobic C4-dicarboxylate membrane transporter 127295 dcuB 4539326 dcuB Campylobacter fetus subsp. fetus 82-40 anaerobic C4-dicarboxylate membrane transporter YP_891355.1 125622 R 360106 CDS YP_891356.1 118474457 4539081 127455..128423 1 NC_008599.1 in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; putative transporter 128423 4539081 CFF8240_0147 Campylobacter fetus subsp. fetus 82-40 putative transporter YP_891356.1 127455 D 360106 CDS YP_891357.1 118474575 4538688 128431..129237 1 NC_008599.1 identified by match to protein family HMM PF01435; peptidase M48, Ste24p 129237 4538688 CFF8240_0148 Campylobacter fetus subsp. fetus 82-40 peptidase M48, Ste24p YP_891357.1 128431 D 360106 CDS YP_891358.1 118475421 4538219 complement(129328..130923) 1 NC_008599.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; glycolate permease GlcA 130923 4538219 CFF8240_0149 Campylobacter fetus subsp. fetus 82-40 glycolate permease GlcA YP_891358.1 129328 R 360106 CDS YP_891359.1 118475621 4538286 131274..132575 1 NC_008599.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; magnesium and cobalt efflux protein CorC 132575 4538286 CFF8240_0151 Campylobacter fetus subsp. fetus 82-40 magnesium and cobalt efflux protein CorC YP_891359.1 131274 D 360106 CDS YP_891360.1 118474365 4537931 complement(132572..133048) 1 NC_008599.1 hypothetical protein 133048 4537931 CFF8240_0150 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891360.1 132572 R 360106 CDS YP_891361.1 118474632 4539298 139623..140054 1 NC_008599.1 hypothetical protein 140054 4539298 CFF8240_0156 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891361.1 139623 D 360106 CDS YP_891362.1 118474143 4538029 140447..140806 1 NC_008599.1 identified by match to protein family HMM PF00507; NADH-quinone oxidoreductase, a subunit 140806 nuoA 4538029 nuoA Campylobacter fetus subsp. fetus 82-40 NADH-quinone oxidoreductase, a subunit YP_891362.1 140447 D 360106 CDS YP_891363.1 118474832 4538706 140797..141303 1 NC_008599.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR01957; NADH-quinone oxidoreductase subunit B 141303 4538706 CFF8240_0158 Campylobacter fetus subsp. fetus 82-40 NADH-quinone oxidoreductase subunit B YP_891363.1 140797 D 360106 CDS YP_891364.1 118474354 4537920 141296..142981 1 NC_008599.1 identified by match to protein family HMM PF00329; match to protein family HMM PF00346; NADH-quinone oxidoreductase subunit C/D 142981 4537920 CFF8240_0159 Campylobacter fetus subsp. fetus 82-40 NADH-quinone oxidoreductase subunit C/D YP_891364.1 141296 D 360106 CDS YP_891365.1 118475092 4538177 142978..143469 1 NC_008599.1 identified by match to protein family HMM PF01257; hydrogenosomal NADH dehydrogenase 24 kDa subunit 143469 4538177 CFF8240_0160 Campylobacter fetus subsp. fetus 82-40 hydrogenosomal NADH dehydrogenase 24 kDa subunit YP_891365.1 142978 D 360106 CDS YP_891366.1 118474520 4538008 143456..144676 1 NC_008599.1 identified by match to protein family HMM PF01512; NADH-quinone oxidoreductase subunit f 144676 4538008 CFF8240_0161 Campylobacter fetus subsp. fetus 82-40 NADH-quinone oxidoreductase subunit f YP_891366.1 143456 D 360106 CDS YP_891367.1 118475236 4538400 144676..146070 1 NC_008599.1 identified by match to protein family HMM PF00111; NADH-quinone oxidoreductase subunit G 146070 nuoG 4538400 nuoG Campylobacter fetus subsp. fetus 82-40 NADH-quinone oxidoreductase subunit G YP_891367.1 144676 D 360106 CDS YP_891368.1 118475393 4538869 146067..147344 1 NC_008599.1 identified by match to protein family HMM PF00146; NAD(P)H-quinone oxidoreductase chain 1 147344 4538869 CFF8240_0163 Campylobacter fetus subsp. fetus 82-40 NAD(P)H-quinone oxidoreductase chain 1 YP_891368.1 146067 D 360106 CDS YP_891369.1 118475180 4539360 147334..147831 1 NC_008599.1 identified by match to protein family HMM PF00037; NADH-ubiquinone oxidoreductase subunit 8 147831 4539360 CFF8240_0164 Campylobacter fetus subsp. fetus 82-40 NADH-ubiquinone oxidoreductase subunit 8 YP_891369.1 147334 D 360106 CDS YP_891370.1 118475160 4537773 147831..148325 1 NC_008599.1 identified by match to protein family HMM PF00499; NADH-quinone oxidoreductase subunit j 148325 4537773 CFF8240_0165 Campylobacter fetus subsp. fetus 82-40 NADH-quinone oxidoreductase subunit j YP_891370.1 147831 D 360106 CDS YP_891371.1 118474209 4538526 148318..148626 1 NC_008599.1 identified by match to protein family HMM PF00420; NADH-quinone oxidoreductase, k subunit 148626 nuoK 4538526 nuoK Campylobacter fetus subsp. fetus 82-40 NADH-quinone oxidoreductase, k subunit YP_891371.1 148318 D 360106 CDS YP_891372.1 118475000 4539526 148616..150427 1 NC_008599.1 identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NADH-quinone oxidoreductase chain l 150427 4539526 CFF8240_0167 Campylobacter fetus subsp. fetus 82-40 NADH-quinone oxidoreductase chain l YP_891372.1 148616 D 360106 CDS YP_891373.1 118474847 4538721 150424..151911 1 NC_008599.1 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-quinone oxidoreductase chain m 151911 4538721 CFF8240_0168 Campylobacter fetus subsp. fetus 82-40 NADH-quinone oxidoreductase chain m YP_891373.1 150424 D 360106 CDS YP_891374.1 118474895 4539050 151908..153317 1 NC_008599.1 identified by match to protein family HMM PF00361; proton-translocating NADH-quinone oxidoreductase, chain n 153317 4539050 CFF8240_0169 Campylobacter fetus subsp. fetus 82-40 proton-translocating NADH-quinone oxidoreductase, chain n YP_891374.1 151908 D 360106 CDS YP_891375.1 118475653 4538686 153539..154294 1 NC_008599.1 Co2+ ABC transporter periplasmic protein 154294 4538686 CFF8240_0170 Campylobacter fetus subsp. fetus 82-40 Co2+ ABC transporter periplasmic protein YP_891375.1 153539 D 360106 CDS YP_891376.1 118474548 4538077 154295..154879 1 NC_008599.1 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 154879 4538077 CFF8240_0171 Campylobacter fetus subsp. fetus 82-40 cobalt transport protein CbiM YP_891376.1 154295 D 360106 CDS YP_891377.1 118474460 4537942 154876..155292 1 NC_008599.1 hypothetical protein 155292 4537942 CFF8240_0172 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891377.1 154876 D 360106 CDS YP_891378.1 118475061 4538805 155283..155936 1 NC_008599.1 identified by match to protein family HMM PF02361; cobalt ABC transporter CbiQ, permease subunit 155936 4538805 CFF8240_0173 Campylobacter fetus subsp. fetus 82-40 cobalt ABC transporter CbiQ, permease subunit YP_891378.1 155283 D 360106 CDS YP_891379.1 118474444 4539066 155933..156586 1 NC_008599.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463; cobalt transport ATP-binding protein CbiO 156586 4539066 CFF8240_0174 Campylobacter fetus subsp. fetus 82-40 cobalt transport ATP-binding protein CbiO YP_891379.1 155933 D 360106 CDS YP_891380.1 118475210 4538255 156701..158785 1 NC_008599.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 158785 topA 4538255 topA Campylobacter fetus subsp. fetus 82-40 DNA topoisomerase I YP_891380.1 156701 D 360106 CDS YP_891381.1 118474664 4539412 158793..159620 1 NC_008599.1 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 159620 4539412 CFF8240_0176 Campylobacter fetus subsp. fetus 82-40 biotin synthase YP_891381.1 158793 D 360106 CDS YP_891382.1 118474877 4538636 159601..160767 1 NC_008599.1 identified by match to protein family HMM PF00999; sodium/hydrogen exchanger family protein 160767 4538636 CFF8240_0177 Campylobacter fetus subsp. fetus 82-40 sodium/hydrogen exchanger family protein YP_891382.1 159601 D 360106 CDS YP_891383.1 118475504 4539477 160849..162126 1 NC_008599.1 identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798; citrate synthase I 162126 gltA 4539477 gltA Campylobacter fetus subsp. fetus 82-40 citrate synthase I YP_891383.1 160849 D 360106 CDS YP_891384.1 118475184 4539364 162123..162905 1 NC_008599.1 identified by match to protein family HMM PF00459; 3'(2'),5'-bisphosphate nucleotidase 162905 cysQ 4539364 cysQ Campylobacter fetus subsp. fetus 82-40 3'(2'),5'-bisphosphate nucleotidase YP_891384.1 162123 D 360106 CDS YP_891385.1 118474415 4537799 163015..164037 1 NC_008599.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter substrate-binding protein 164037 pstS 4537799 pstS Campylobacter fetus subsp. fetus 82-40 phosphate ABC transporter substrate-binding protein YP_891385.1 163015 D 360106 CDS YP_891386.1 118474109 4538658 164100..164975 1 NC_008599.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter, permease protein PstC 164975 pstC 4538658 pstC Campylobacter fetus subsp. fetus 82-40 phosphate ABC transporter, permease protein PstC YP_891386.1 164100 D 360106 CDS YP_891387.1 118475259 4539109 164972..165811 1 NC_008599.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter, permease protein PstA 165811 pstA 4539109 pstA Campylobacter fetus subsp. fetus 82-40 phosphate ABC transporter, permease protein PstA YP_891387.1 164972 D 360106 CDS YP_891388.1 118475702 4539019 165822..166583 1 NC_008599.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972; phosphate ABC transporter ATP-binding protein 166583 pstB 4539019 pstB Campylobacter fetus subsp. fetus 82-40 phosphate ABC transporter ATP-binding protein YP_891388.1 165822 D 360106 CDS YP_891389.1 118474240 4537873 166702..167994 1 NC_008599.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; multidrug-efflux transporter 167994 4537873 CFF8240_0184 Campylobacter fetus subsp. fetus 82-40 multidrug-efflux transporter YP_891389.1 166702 D 360106 CDS YP_891390.1 118474502 4539281 168236..169870 1 NC_008599.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 169870 4539281 CFF8240_0185 Campylobacter fetus subsp. fetus 82-40 methyl-accepting chemotaxis protein YP_891390.1 168236 D 360106 CDS YP_891391.1 118475682 4538503 complement(169898..170956) 1 NC_008599.1 hypothetical protein 170956 4538503 CFF8240_0186 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891391.1 169898 R 360106 CDS YP_891392.1 118475190 4539370 complement(171105..171521) 1 NC_008599.1 identified by match to protein family HMM PF00583; acetyltransferase 171521 4539370 CFF8240_0187 Campylobacter fetus subsp. fetus 82-40 acetyltransferase YP_891392.1 171105 R 360106 CDS YP_891393.1 118475472 4538582 complement(171518..172510) 1 NC_008599.1 hypothetical protein 172510 4538582 CFF8240_0188 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891393.1 171518 R 360106 CDS YP_891394.1 118474458 4539082 complement(172582..173775) 1 NC_008599.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin binding domain-containing protein 173775 4539082 CFF8240_0189 Campylobacter fetus subsp. fetus 82-40 molybdopterin binding domain-containing protein YP_891394.1 172582 R 360106 CDS YP_891395.1 118475178 4539358 complement(173911..175884) 1 NC_008599.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 175884 4539358 CFF8240_0190 Campylobacter fetus subsp. fetus 82-40 methyl-accepting chemotaxis protein YP_891395.1 173911 R 360106 CDS YP_891396.1 118474170 4539097 complement(176256..176735) 1 NC_008599.1 hypothetical protein 176735 4539097 CFF8240_0191 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891396.1 176256 R 360106 CDS YP_891397.1 118475007 4538047 complement(176750..177196) 1 NC_008599.1 molybdopterin converting factor subunit 2 177196 4538047 CFF8240_0192 Campylobacter fetus subsp. fetus 82-40 molybdopterin converting factor subunit 2 YP_891397.1 176750 R 360106 CDS YP_891398.1 118474067 4538730 complement(177198..177419) 1 NC_008599.1 identified by match to protein family HMM PF02597; hypothetical protein 177419 4538730 CFF8240_0193 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891398.1 177198 R 360106 CDS YP_891399.1 118475280 4539131 complement(177457..178770) 1 NC_008599.1 identified by match to protein family HMM PF05670; putative fibronectin/fibrinogen-binding protein 178770 4539131 CFF8240_0194 Campylobacter fetus subsp. fetus 82-40 putative fibronectin/fibrinogen-binding protein YP_891399.1 177457 R 360106 CDS YP_891400.1 118474772 4538839 178827..180092 1 NC_008599.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 180092 leuC 4538839 leuC Campylobacter fetus subsp. fetus 82-40 3-isopropylmalate dehydratase large subunit YP_891400.1 178827 D 360106 CDS YP_891401.1 118475117 4539316 180104..180646 1 NC_008599.1 molybdopterin-guanine dinucleotide biosynthesis protein A 180646 4539316 CFF8240_0196 Campylobacter fetus subsp. fetus 82-40 molybdopterin-guanine dinucleotide biosynthesis protein A YP_891401.1 180104 D 360106 CDS YP_891402.1 118474551 4538080 180643..181665 1 NC_008599.1 identified by match to protein family HMM PF02253; phospholipase A 181665 4538080 CFF8240_0197 Campylobacter fetus subsp. fetus 82-40 phospholipase A YP_891402.1 180643 D 360106 CDS YP_891403.1 118475365 4538473 complement(181706..182422) 1 NC_008599.1 hypothetical protein 182422 4538473 CFF8240_0198 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891403.1 181706 R 360106 CDS YP_891404.1 118475304 4539544 complement(182436..182714) 1 NC_008599.1 hypothetical protein 182714 4539544 CFF8240_0199 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891404.1 182436 R 360106 CDS YP_891405.1 118474357 4537923 complement(182711..183961) 1 NC_008599.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 183961 eno 4537923 eno Campylobacter fetus subsp. fetus 82-40 phosphopyruvate hydratase YP_891405.1 182711 R 360106 CDS YP_891406.1 118474319 4538850 complement(183961..184998) 1 NC_008599.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 184998 recA 4538850 recA Campylobacter fetus subsp. fetus 82-40 recombinase A YP_891406.1 183961 R 360106 CDS YP_891407.1 118474559 4538088 185099..185965 1 NC_008599.1 identified by match to protein family HMM PF02642; hypothetical protein 185965 4538088 CFF8240_0202 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891407.1 185099 D 360106 CDS YP_891408.1 118474914 4538936 185965..186231 1 NC_008599.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 186231 fliQ 4538936 fliQ Campylobacter fetus subsp. fetus 82-40 flagellar biosynthesis protein FliQ YP_891408.1 185965 D 360106 CDS YP_891409.1 118474935 4538898 186228..186989 1 NC_008599.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 186989 murB 4538898 murB Campylobacter fetus subsp. fetus 82-40 UDP-N-acetylenolpyruvoylglucosamine reductase YP_891409.1 186228 D 360106 CDS YP_891410.1 118474200 4538517 187151..187285 1 NC_008599.1 hypothetical protein 187285 4538517 CFF8240_0206 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891410.1 187151 D 360106 CDS YP_891411.1 118474894 4539049 187304..187633 1 NC_008599.1 hypothetical protein 187633 4539049 CFF8240_0207 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891411.1 187304 D 360106 CDS YP_891412.1 118475403 4538880 187638..187955 1 NC_008599.1 hypothetical protein 187955 4538880 CFF8240_0208 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891412.1 187638 D 360106 CDS YP_891413.1 118475404 4538202 188012..188755 1 NC_008599.1 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 188755 cdsA 4538202 cdsA Campylobacter fetus subsp. fetus 82-40 phosphatidate cytidylyltransferase YP_891413.1 188012 D 360106 CDS YP_891414.1 118474641 4539309 188752..189834 1 NC_008599.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 189834 dxr 4539309 dxr Campylobacter fetus subsp. fetus 82-40 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_891414.1 188752 D 360106 CDS YP_891415.1 118474760 4538826 189834..190466 1 NC_008599.1 identified by match to protein family HMM PF03352; DNA-3-methyladenine glycosylase 190466 4538826 CFF8240_0211 Campylobacter fetus subsp. fetus 82-40 DNA-3-methyladenine glycosylase YP_891415.1 189834 D 360106 CDS YP_891416.1 118474235 4537868 190456..191709 1 NC_008599.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease 191709 uraA 4537868 uraA Campylobacter fetus subsp. fetus 82-40 uracil permease YP_891416.1 190456 D 360106 CDS YP_891417.1 118475677 4538497 191713..192450 1 NC_008599.1 identified by match to protein family HMM PF02557; match to protein family HMM TIGR01409; twin-arginine translocation pathway signal sequence domain-containing protein 192450 4538497 CFF8240_0213 Campylobacter fetus subsp. fetus 82-40 twin-arginine translocation pathway signal sequence domain-containing protein YP_891417.1 191713 D 360106 CDS YP_891418.1 118474570 4538099 192464..193783 1 NC_008599.1 hypothetical protein 193783 4538099 CFF8240_0214 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891418.1 192464 D 360106 CDS YP_891419.1 118475738 4538347 193780..194787 1 NC_008599.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 194787 4538347 CFF8240_0215 Campylobacter fetus subsp. fetus 82-40 putative DNA-binding/iron metalloprotein/AP endonuclease YP_891419.1 193780 D 360106 CDS YP_891420.1 118474734 4538547 194850..197186 1 NC_008599.1 hypothetical protein 197186 4538547 CFF8240_0217 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891420.1 194850 D 360106 CDS YP_891421.1 118474756 4538782 complement(197181..198083) 1 NC_008599.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 198083 miaA 4538782 miaA Campylobacter fetus subsp. fetus 82-40 tRNA delta(2)-isopentenylpyrophosphate transferase YP_891421.1 197181 R 360106 CDS YP_891422.1 118475121 4539320 198168..199037 1 NC_008599.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 199037 ubiA 4539320 ubiA Campylobacter fetus subsp. fetus 82-40 prenyltransferase YP_891422.1 198168 D 360106 CDS YP_891423.1 118474154 4538041 199085..199534 1 NC_008599.1 hypothetical protein 199534 4538041 CFF8240_0219 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891423.1 199085 D 360106 CDS YP_891424.1 118474960 4537997 199527..200051 1 NC_008599.1 hypothetical protein 200051 4537997 CFF8240_0220 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891424.1 199527 D 360106 CDS YP_891425.1 118475331 4538612 200051..201019 1 NC_008599.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 201019 moaA 4538612 moaA Campylobacter fetus subsp. fetus 82-40 molybdenum cofactor biosynthesis protein A YP_891425.1 200051 D 360106 CDS YP_891426.1 118474370 4538914 201019..201744 1 NC_008599.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 201744 4538914 CFF8240_0222 Campylobacter fetus subsp. fetus 82-40 radical SAM domain-containing protein YP_891426.1 201019 D 360106 CDS YP_891427.1 118474661 4539409 complement(201818..202966) 1 NC_008599.1 identified by match to protein family HMM PF00465; iron-containing alcohol dehydrogenase 202966 4539409 CFF8240_0223 Campylobacter fetus subsp. fetus 82-40 iron-containing alcohol dehydrogenase YP_891427.1 201818 R 360106 CDS YP_891428.1 118475344 4538625 203060..203641 1 NC_008599.1 putative 6-pyruvoyl tetrahydrobiopterin synthase 203641 4538625 CFF8240_0224 Campylobacter fetus subsp. fetus 82-40 putative 6-pyruvoyl tetrahydrobiopterin synthase YP_891428.1 203060 D 360106 CDS YP_891429.1 118474828 4538139 203641..203820 1 NC_008599.1 hypothetical protein 203820 4538139 CFF8240_0225 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891429.1 203641 D 360106 CDS YP_891430.1 118475604 4539500 203827..204234 1 NC_008599.1 hypothetical protein 204234 4539500 CFF8240_0226 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891430.1 203827 D 360106 CDS YP_891431.1 118475053 4538797 204231..204884 1 NC_008599.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 204884 4538797 CFF8240_0227 Campylobacter fetus subsp. fetus 82-40 16S ribosomal RNA methyltransferase RsmE YP_891431.1 204231 D 360106 CDS YP_891432.1 118474102 4538649 204886..205212 1 NC_008599.1 hypothetical protein 205212 4538649 CFF8240_0228 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891432.1 204886 D 360106 CDS YP_891433.1 118474622 4538600 205190..207817 1 NC_008599.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 207817 4538600 CFF8240_0229 Campylobacter fetus subsp. fetus 82-40 DNA polymerase I YP_891433.1 205190 D 360106 CDS YP_891434.1 118475363 4538470 207889..208659 1 NC_008599.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 208659 4538470 CFF8240_0230 Campylobacter fetus subsp. fetus 82-40 flagellar motor protein MotA YP_891434.1 207889 D 360106 CDS YP_891435.1 118474845 4538719 208668..209384 1 NC_008599.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 209384 motB 4538719 motB Campylobacter fetus subsp. fetus 82-40 flagellar motor protein MotB YP_891435.1 208668 D 360106 CDS YP_891436.1 118475634 4538299 209521..209802 1 NC_008599.1 identified by match to protein family HMM PF00037; ferredoxin, 4Fe-4S 209802 4538299 CFF8240_0232 Campylobacter fetus subsp. fetus 82-40 ferredoxin, 4Fe-4S YP_891436.1 209521 D 360106 CDS YP_891437.1 118474185 4537758 209906..210319 1 NC_008599.1 identified by match to protein family HMM PF00334; nucleoside diphosphate kinase 210319 ndk 4537758 ndk Campylobacter fetus subsp. fetus 82-40 nucleoside diphosphate kinase YP_891437.1 209906 D 360106 CDS YP_891438.1 118474642 4539311 210335..210700 1 NC_008599.1 hypothetical protein 210700 4539311 CFF8240_0234 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891438.1 210335 D 360106 CDS YP_891439.1 118474248 4537881 210702..210848 1 NC_008599.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 210848 rpmF 4537881 rpmF Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L32 YP_891439.1 210702 D 360106 CDS YP_891440.1 118474989 4539514 210858..211847 1 NC_008599.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 211847 plsX 4539514 plsX Campylobacter fetus subsp. fetus 82-40 putative glycerol-3-phosphate acyltransferase PlsX YP_891440.1 210858 D 360106 CDS YP_891441.1 118474601 4538111 211855..212841 1 NC_008599.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 212841 4538111 CFF8240_0237 Campylobacter fetus subsp. fetus 82-40 3-oxoacyl-ACP synthase YP_891441.1 211855 D 360106 CDS YP_891442.1 118475680 4538500 212915..214042 1 NC_008599.1 hypothetical protein 214042 4538500 CFF8240_0238 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891442.1 212915 D 360106 CDS YP_891443.1 118474500 4539279 214039..216243 1 NC_008599.1 hypothetical protein 216243 4539279 CFF8240_0239 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891443.1 214039 D 360106 CDS YP_891444.1 118475429 4539342 216253..216870 1 NC_008599.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 216870 4539342 CFF8240_0240 Campylobacter fetus subsp. fetus 82-40 putative glycerol-3-phosphate acyltransferase PlsY YP_891444.1 216253 D 360106 CDS YP_891445.1 118474329 4538551 216867..217184 1 NC_008599.1 FolB domain-containing protein 217184 4538551 CFF8240_0241 Campylobacter fetus subsp. fetus 82-40 FolB domain-containing protein YP_891445.1 216867 D 360106 CDS YP_891446.1 118475303 4539543 217263..217934 1 NC_008599.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component regulator 217934 4539543 CFF8240_0242 Campylobacter fetus subsp. fetus 82-40 two-component regulator YP_891446.1 217263 D 360106 CDS YP_891447.1 118474097 4537910 217997..219238 1 NC_008599.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; histidine kinase 219238 4537910 CFF8240_0243 Campylobacter fetus subsp. fetus 82-40 histidine kinase YP_891447.1 217997 D 360106 CDS YP_891448.1 118474172 4539099 219285..219536 1 NC_008599.1 identified by match to protein family HMM PF00037; ferredoxin 219536 4539099 CFF8240_0244 Campylobacter fetus subsp. fetus 82-40 ferredoxin YP_891448.1 219285 D 360106 CDS YP_891449.1 118475133 4539332 219536..221014 1 NC_008599.1 identified by match to protein family HMM PF02541; phosphatase 221014 4539332 CFF8240_0245 Campylobacter fetus subsp. fetus 82-40 phosphatase YP_891449.1 219536 D 360106 CDS YP_891450.1 118474568 4538097 complement(221015..221629) 1 NC_008599.1 putative recombination protein RecO 221629 4538097 CFF8240_0246 Campylobacter fetus subsp. fetus 82-40 putative recombination protein RecO YP_891450.1 221015 R 360106 CDS YP_891451.1 118475725 4538759 complement(221631..222551) 1 NC_008599.1 identified by match to protein family HMM PF01207; tRNA-dihydrouridine synthase B 222551 4538759 CFF8240_0247 Campylobacter fetus subsp. fetus 82-40 tRNA-dihydrouridine synthase B YP_891451.1 221631 R 360106 CDS YP_891452.1 118474540 4538069 complement(222548..223552) 1 NC_008599.1 hypothetical protein 223552 4538069 CFF8240_0248 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891452.1 222548 R 360106 CDS YP_891453.1 118475537 4538143 complement(223549..223917) 1 NC_008599.1 identified by match to protein family HMM PF01258; TraR/DksA family transcriptional regulator 223917 4538143 CFF8240_0249 Campylobacter fetus subsp. fetus 82-40 TraR/DksA family transcriptional regulator YP_891453.1 223549 R 360106 CDS YP_891454.1 118475207 4538252 complement(223927..224376) 1 NC_008599.1 similar to jhp_0883; identified by match to protein family HMM PF02590; hypothetical protein 224376 4538252 CFF8240_0250 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891454.1 223927 R 360106 CDS YP_891455.1 118474066 4538729 complement(224376..225257) 1 NC_008599.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 225257 accD 4538729 accD Campylobacter fetus subsp. fetus 82-40 acetyl-CoA carboxylase subunit beta YP_891455.1 224376 R 360106 CDS YP_891456.1 118475037 4538433 225491..226087 1 NC_008599.1 identified by match to protein family HMM PF00578; alkyl hydroperoxide reductase TsaA 226087 4538433 CFF8240_0252 Campylobacter fetus subsp. fetus 82-40 alkyl hydroperoxide reductase TsaA YP_891456.1 225491 D 360106 CDS YP_891457.1 118474074 4538737 226208..226594 1 NC_008599.1 hypothetical protein 226594 4538737 CFF8240_0253 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891457.1 226208 D 360106 CDS YP_891458.1 118475579 4539240 complement(226724..227803) 1 NC_008599.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 227803 serC 4539240 serC Campylobacter fetus subsp. fetus 82-40 phosphoserine aminotransferase YP_891458.1 226724 R 360106 CDS YP_891459.1 118474545 4538074 complement(227815..228978) 1 NC_008599.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 228978 xseA 4538074 xseA Campylobacter fetus subsp. fetus 82-40 exodeoxyribonuclease VII large subunit YP_891459.1 227815 R 360106 CDS YP_891460.1 118475643 4538676 complement(228975..229691) 1 NC_008599.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 229691 ubiE 4538676 ubiE Campylobacter fetus subsp. fetus 82-40 ubiquinone/menaquinone biosynthesis methyltransferase YP_891460.1 228975 R 360106 CDS YP_891461.1 118475054 4538798 complement(229692..231080) 1 NC_008599.1 hypothetical protein 231080 4538798 CFF8240_0257 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891461.1 229692 R 360106 CDS YP_891462.1 118474125 4538326 complement(231256..232533) 1 NC_008599.1 identified by match to protein family HMM PF07158; putative integral membrane protein 232533 4538326 CFF8240_0258 Campylobacter fetus subsp. fetus 82-40 putative integral membrane protein YP_891462.1 231256 R 360106 CDS YP_891463.1 118475276 4539127 232870..233853 1 NC_008599.1 secretion protein HlyD 233853 4539127 CFF8240_0259 Campylobacter fetus subsp. fetus 82-40 secretion protein HlyD YP_891463.1 232870 D 360106 CDS YP_891464.1 118474316 4538847 233837..235492 1 NC_008599.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 235492 4538847 CFF8240_0260 Campylobacter fetus subsp. fetus 82-40 ABC transporter ATP-binding protein YP_891464.1 233837 D 360106 CDS YP_891465.1 118475223 4539169 235482..236555 1 NC_008599.1 identified by match to protein family HMM PF01061; ABC transporter permease 236555 4539169 CFF8240_0261 Campylobacter fetus subsp. fetus 82-40 ABC transporter permease YP_891465.1 235482 D 360106 CDS YP_891466.1 118474271 4537980 236552..237610 1 NC_008599.1 identified by match to protein family HMM PF01061; ABC-type multidrug transport system permease component 237610 4537980 CFF8240_0262 Campylobacter fetus subsp. fetus 82-40 ABC-type multidrug transport system permease component YP_891466.1 236552 D 360106 CDS YP_891467.1 118475488 4538367 complement(237629..238045) 1 NC_008599.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 238045 4538367 CFF8240_0263 Campylobacter fetus subsp. fetus 82-40 FUR family transcriptional regulator YP_891467.1 237629 R 360106 CDS YP_891468.1 118475513 4539487 complement(238128..239930) 1 NC_008599.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 239930 dxs 4539487 dxs Campylobacter fetus subsp. fetus 82-40 1-deoxy-D-xylulose-5-phosphate synthase YP_891468.1 238128 R 360106 CDS YP_891469.1 118475052 4538796 complement(239934..240731) 1 NC_008599.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 240731 fliH 4538796 fliH Campylobacter fetus subsp. fetus 82-40 flagellar assembly protein H YP_891469.1 239934 R 360106 CDS YP_891470.1 118474848 4538722 complement(240728..241756) 1 NC_008599.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 241756 fliG 4538722 fliG Campylobacter fetus subsp. fetus 82-40 flagellar motor switch protein G YP_891470.1 240728 R 360106 CDS YP_891471.1 118475241 4538405 complement(241756..243462) 1 NC_008599.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 243462 fliF 4538405 fliF Campylobacter fetus subsp. fetus 82-40 flagellar MS-ring protein YP_891471.1 241756 R 360106 CDS YP_891472.1 118474105 4538652 complement(243469..244569) 1 NC_008599.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 244569 hisC 4538652 hisC Campylobacter fetus subsp. fetus 82-40 histidinol-phosphate aminotransferase YP_891472.1 243469 R 360106 CDS YP_891473.1 118474277 4539458 complement(244572..245648) 1 NC_008599.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807; chorismate mutase/prephenate dehydratase 245648 pheA 4539458 pheA Campylobacter fetus subsp. fetus 82-40 chorismate mutase/prephenate dehydratase YP_891473.1 244572 R 360106 CDS YP_891474.1 118475261 4539111 complement(245635..246414) 1 NC_008599.1 identified by match to protein family HMM TIGR01460; HAD family hydrolase 246414 4539111 CFF8240_0270 Campylobacter fetus subsp. fetus 82-40 HAD family hydrolase YP_891474.1 245635 R 360106 CDS YP_891475.1 118475343 4538624 complement(246414..247625) 1 NC_008599.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 247625 lysA 4538624 lysA Campylobacter fetus subsp. fetus 82-40 diaminopimelate decarboxylase YP_891475.1 246414 R 360106 CDS YP_891476.1 118474677 4539561 complement(247838..248899) 1 NC_008599.1 identified by match to protein family HMM PF03739; permease YjgP/YjgQ 248899 4539561 CFF8240_0272 Campylobacter fetus subsp. fetus 82-40 permease YjgP/YjgQ YP_891476.1 247838 R 360106 CDS YP_891477.1 118474710 4539265 249015..249662 1 NC_008599.1 hypothetical protein 249662 4539265 CFF8240_0273 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891477.1 249015 D 360106 CDS YP_891478.1 118475547 4538153 249711..250325 1 NC_008599.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 250325 4538153 CFF8240_0274 Campylobacter fetus subsp. fetus 82-40 putative deoxyribonucleotide triphosphate pyrophosphatase YP_891478.1 249711 D 360106 CDS YP_891479.1 118475578 4539239 252665..253612 1 NC_008599.1 identified by match to protein family HMM PF00296; luciferase-alpha subunit 253612 4539239 CFF8240_0277 Campylobacter fetus subsp. fetus 82-40 luciferase-alpha subunit YP_891479.1 252665 D 360106 CDS YP_891480.1 118475024 4538419 253623..254618 1 NC_008599.1 identified by match to protein family HMM PF01497; periplasmic binding family protein 254618 4538419 CFF8240_0278 Campylobacter fetus subsp. fetus 82-40 periplasmic binding family protein YP_891480.1 253623 D 360106 CDS YP_891481.1 118475528 4538231 254605..255585 1 NC_008599.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032; ABC transporter permease 255585 4538231 CFF8240_0279 Campylobacter fetus subsp. fetus 82-40 ABC transporter permease YP_891481.1 254605 D 360106 CDS YP_891482.1 118474573 4538102 255582..256310 1 NC_008599.1 identified by match to protein family HMM PF00005; iron chelate ABC transporter ATP-binding protein 256310 4538102 CFF8240_0280 Campylobacter fetus subsp. fetus 82-40 iron chelate ABC transporter ATP-binding protein YP_891482.1 255582 D 360106 CDS YP_891483.1 118475227 4539173 256307..257098 1 NC_008599.1 hypothetical protein 257098 4539173 CFF8240_0281 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891483.1 256307 D 360106 CDS YP_891484.1 118474617 4538595 257109..257537 1 NC_008599.1 identified by match to protein family HMM PF01618; match to protein family HMM TIGR02805; TonB-system energizer ExbB 257537 exbB 4538595 exbB Campylobacter fetus subsp. fetus 82-40 TonB-system energizer ExbB YP_891484.1 257109 D 360106 CDS YP_891485.1 118475082 4538167 257534..257914 1 NC_008599.1 identified by match to protein family HMM PF02472; match to protein family HMM TIGR02804; TonB system transport protein ExbD 257914 expD 4538167 expD Campylobacter fetus subsp. fetus 82-40 TonB system transport protein ExbD YP_891485.1 257534 D 360106 CDS YP_891486.1 118475022 4538063 257922..258674 1 NC_008599.1 identified by match to protein family HMM TIGR01352; TonB family protein 258674 4538063 CFF8240_0284 Campylobacter fetus subsp. fetus 82-40 TonB family protein YP_891486.1 257922 D 360106 CDS YP_891487.1 118475277 4539128 258856..260070 1 NC_008599.1 identified by match to protein family HMM PF03435; saccharopine dehydrogenase 260070 lys 4539128 lys Campylobacter fetus subsp. fetus 82-40 saccharopine dehydrogenase YP_891487.1 258856 D 360106 CDS YP_891488.1 118474312 4538843 260067..260327 1 NC_008599.1 hypothetical protein 260327 4538843 CFF8240_0286 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891488.1 260067 D 360106 CDS YP_891489.1 118474643 4539312 260388..260588 1 NC_008599.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 260588 rpmE 4539312 rpmE Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L31 YP_891489.1 260388 D 360106 CDS YP_891490.1 118475395 4538871 260593..261408 1 NC_008599.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 261408 4538871 CFF8240_0288 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891490.1 260593 D 360106 CDS YP_891491.1 118475710 4539027 261445..262125 1 NC_008599.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 262125 4539027 CFF8240_0289 Campylobacter fetus subsp. fetus 82-40 RNA methyltransferase YP_891491.1 261445 D 360106 CDS YP_891492.1 118474730 4538543 262205..263044 1 NC_008599.1 hypothetical protein 263044 4538543 CFF8240_0290 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891492.1 262205 D 360106 CDS YP_891493.1 118475591 4539252 263038..263856 1 NC_008599.1 hypothetical protein 263856 4539252 CFF8240_0291 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891493.1 263038 D 360106 CDS YP_891494.1 118474168 4539095 263866..265074 1 NC_008599.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 265074 4539095 CFF8240_0292 Campylobacter fetus subsp. fetus 82-40 aspartate aminotransferase YP_891494.1 263866 D 360106 CDS YP_891495.1 118474449 4539072 265071..266339 1 NC_008599.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 266339 4539072 CFF8240_0293 Campylobacter fetus subsp. fetus 82-40 homoserine dehydrogenase YP_891495.1 265071 D 360106 CDS YP_891496.1 118475377 4538485 266341..266679 1 NC_008599.1 similar to jhp_0762; identified by match to protein family HMM PF02021; hypothetical protein 266679 4538485 CFF8240_0294 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891496.1 266341 D 360106 CDS YP_891497.1 118474749 4538775 266752..267066 1 NC_008599.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 267066 trx 4538775 trx Campylobacter fetus subsp. fetus 82-40 thioredoxin YP_891497.1 266752 D 360106 CDS YP_891498.1 118475069 4538813 267184..268128 1 NC_008599.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 268128 trxB 4538813 trxB Campylobacter fetus subsp. fetus 82-40 thioredoxin-disulfide reductase YP_891498.1 267184 D 360106 CDS YP_891499.1 118475085 4538170 268220..268999 1 NC_008599.1 hypothetical protein 268999 4538170 CFF8240_0297 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891499.1 268220 D 360106 CDS YP_891500.1 118474129 4538330 269194..269958 1 NC_008599.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 269958 dapB 4538330 dapB Campylobacter fetus subsp. fetus 82-40 dihydrodipicolinate reductase YP_891500.1 269194 D 360106 CDS YP_891501.1 118475248 4538412 269960..271300 1 NC_008599.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 271300 purF 4538412 purF Campylobacter fetus subsp. fetus 82-40 amidophosphoribosyltransferase YP_891501.1 269960 D 360106 CDS YP_891502.1 118475464 4538574 complement(271359..271892) 1 NC_008599.1 hypothetical protein 271892 4538574 CFF8240_0300 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891502.1 271359 R 360106 CDS YP_891503.1 118474369 4538913 complement(271892..272332) 1 NC_008599.1 putative integral membrane protein 272332 4538913 CFF8240_0301 Campylobacter fetus subsp. fetus 82-40 putative integral membrane protein YP_891503.1 271892 R 360106 CDS YP_891504.1 118475231 4539178 complement(272409..273140) 1 NC_008599.1 identified by match to protein family HMM PF01502; match to protein family HMM PF01503; phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP cyclohydrolase 273140 hisIE 4539178 hisIE Campylobacter fetus subsp. fetus 82-40 phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP cyclohydrolase YP_891504.1 272409 R 360106 CDS YP_891505.1 118474087 4537900 complement(273150..274244) 1 NC_008599.1 identified by match to protein family HMM PF01145; SPFH domain-containing protein 274244 4537900 CFF8240_0303 Campylobacter fetus subsp. fetus 82-40 SPFH domain-containing protein YP_891505.1 273150 R 360106 CDS YP_891506.1 118475099 4539435 complement(274262..275185) 1 NC_008599.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 275185 ilvE 4539435 ilvE Campylobacter fetus subsp. fetus 82-40 branched-chain amino acid aminotransferase YP_891506.1 274262 R 360106 CDS YP_891507.1 118474151 4538038 complement(275268..275528) 1 NC_008599.1 identified by match to protein family HMM PF01381; XRE family transcriptional regulator 275528 4538038 CFF8240_0305 Campylobacter fetus subsp. fetus 82-40 XRE family transcriptional regulator YP_891507.1 275268 R 360106 CDS YP_891508.1 118475293 4539532 275618..275875 1 NC_008599.1 hypothetical protein 275875 4539532 CFF8240_0306 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891508.1 275618 D 360106 CDS YP_891509.1 118474318 4538849 275883..276281 1 NC_008599.1 hypothetical protein 276281 4538849 CFF8240_0307 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891509.1 275883 D 360106 CDS YP_891510.1 118474874 4538633 276283..276510 1 NC_008599.1 hypothetical protein 276510 4538633 CFF8240_0308 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891510.1 276283 D 360106 CDS YP_891511.1 118475679 4538499 276512..277018 1 NC_008599.1 hypothetical protein 277018 4538499 CFF8240_0309 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891511.1 276512 D 360106 CDS YP_891512.1 118475142 4539204 277158..277358 1 NC_008599.1 identified by match to protein family HMM PF01361; hypothetical protein 277358 4539204 CFF8240_0310 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891512.1 277158 D 360106 CDS YP_891513.1 118474406 4537790 277359..277919 1 NC_008599.1 identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 277919 4537790 CFF8240_0311 Campylobacter fetus subsp. fetus 82-40 anti-oxidant AhpCTSA family protein YP_891513.1 277359 D 360106 CDS YP_891514.1 118474146 4538032 complement(277996..281064) 1 NC_008599.1 identified by match to protein family HMM PF05359; hypothetical protein 281064 4538032 CFF8240_0312 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891514.1 277996 R 360106 CDS YP_891515.1 118475285 4539136 281169..282236 1 NC_008599.1 identified by match to protein family HMM PF02677; hypothetical protein 282236 4539136 CFF8240_0313 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891515.1 281169 D 360106 CDS YP_891516.1 118475594 4539255 282842..283330 1 NC_008599.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 283330 fabZ 4539255 fabZ Campylobacter fetus subsp. fetus 82-40 (3R)-hydroxymyristoyl-ACP dehydratase YP_891516.1 282842 D 360106 CDS YP_891517.1 118474812 4538123 283340..284125 1 NC_008599.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 284125 lpxA 4538123 lpxA Campylobacter fetus subsp. fetus 82-40 UDP-N-acetylglucosamine acyltransferase YP_891517.1 283340 D 360106 CDS YP_891518.1 118474538 4538067 284125..285345 1 NC_008599.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 285345 clpX 4538067 clpX Campylobacter fetus subsp. fetus 82-40 ATP-dependent protease ATP-binding subunit ClpX YP_891518.1 284125 D 360106 CDS YP_891519.1 118475732 4538341 285359..286396 1 NC_008599.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 286396 mreB 4538341 mreB Campylobacter fetus subsp. fetus 82-40 rod shape-determining protein MreB YP_891519.1 285359 D 360106 CDS YP_891520.1 118474721 4538534 286434..287138 1 NC_008599.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 287138 4538534 CFF8240_0318 Campylobacter fetus subsp. fetus 82-40 rod shape-determining protein MreC YP_891520.1 286434 D 360106 CDS YP_891521.1 118474214 4538531 287138..290392 1 NC_008599.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 290392 carB 4538531 carB Campylobacter fetus subsp. fetus 82-40 carbamoyl phosphate synthase large subunit YP_891521.1 287138 D 360106 CDS YP_891522.1 118474208 4538525 290389..291228 1 NC_008599.1 identified by match to protein family HMM PF01729; molybdenum transport system protein ModD 291228 4538525 CFF8240_0320 Campylobacter fetus subsp. fetus 82-40 molybdenum transport system protein ModD YP_891522.1 290389 D 360106 CDS YP_891523.1 118475666 4538962 291225..291647 1 NC_008599.1 hypothetical protein 291647 4538962 CFF8240_0321 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891523.1 291225 D 360106 CDS YP_891524.1 118474888 4538647 291749..293047 1 NC_008599.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 293047 4538647 CFF8240_0322 Campylobacter fetus subsp. fetus 82-40 methyl-accepting chemotaxis protein YP_891524.1 291749 D 360106 CDS YP_891525.1 118475459 4539235 complement(293074..293958) 1 NC_008599.1 hypothetical protein 293958 4539235 CFF8240_0323 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891525.1 293074 R 360106 CDS YP_891526.1 118474392 4539148 complement(293951..294598) 1 NC_008599.1 identified by match to protein family HMM PF00899; MoeB/thiF family protein 294598 4539148 CFF8240_0324 Campylobacter fetus subsp. fetus 82-40 MoeB/thiF family protein YP_891526.1 293951 R 360106 CDS YP_891527.1 118475550 4538156 complement(294601..295371) 1 NC_008599.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 295371 surE 4538156 surE Campylobacter fetus subsp. fetus 82-40 stationary phase survival protein SurE YP_891527.1 294601 R 360106 CDS YP_891528.1 118474199 4538516 295450..296481 1 NC_008599.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; ipid-A-disaccharide synthase 296481 lpxB 4538516 lpxB Campylobacter fetus subsp. fetus 82-40 ipid-A-disaccharide synthase YP_891528.1 295450 D 360106 CDS YP_891529.1 118475144 4539206 296518..297003 1 NC_008599.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 297003 greA 4539206 greA Campylobacter fetus subsp. fetus 82-40 transcription elongation factor GreA YP_891529.1 296518 D 360106 CDS YP_891530.1 118475706 4539023 297012..298040 1 NC_008599.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 298040 argC 4539023 argC Campylobacter fetus subsp. fetus 82-40 N-acetyl-gamma-glutamyl-phosphate reductase YP_891530.1 297012 D 360106 CDS YP_891531.1 118474912 4538934 298037..298756 1 NC_008599.1 metallophosphoesterase 298756 4538934 CFF8240_0329 Campylobacter fetus subsp. fetus 82-40 metallophosphoesterase YP_891531.1 298037 D 360106 CDS YP_891532.1 118475582 4539243 298749..299705 1 NC_008599.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV 299705 4539243 CFF8240_0330 Campylobacter fetus subsp. fetus 82-40 chemotaxis protein CheV YP_891532.1 298749 D 360106 CDS YP_891533.1 118474639 4539306 299716..302028 1 NC_008599.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis histidine kinase 302028 4539306 CFF8240_0331 Campylobacter fetus subsp. fetus 82-40 chemotaxis histidine kinase YP_891533.1 299716 D 360106 CDS YP_891534.1 118474195 4537768 302038..302535 1 NC_008599.1 identified by match to protein family HMM PF01584; purine-binding chemotaxis protein CheW 302535 4537768 CFF8240_0332 Campylobacter fetus subsp. fetus 82-40 purine-binding chemotaxis protein CheW YP_891534.1 302038 D 360106 CDS YP_891535.1 118474636 4539303 302544..303167 1 NC_008599.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB 303167 serB 4539303 serB Campylobacter fetus subsp. fetus 82-40 phosphoserine phosphatase SerB YP_891535.1 302544 D 360106 CDS YP_891536.1 118474867 4538317 303180..304175 1 NC_008599.1 Important for the balance of metabolites in the pentose-phosphate pathway; transaldolase 304175 tal 4538317 tal Campylobacter fetus subsp. fetus 82-40 transaldolase YP_891536.1 303180 D 360106 CDS YP_891537.1 118475658 4538954 304185..305381 1 NC_008599.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilT 305381 pilT 4538954 pilT Campylobacter fetus subsp. fetus 82-40 twitching motility protein PilT YP_891537.1 304185 D 360106 CDS YP_891538.1 118474948 4537985 305442..305978 1 NC_008599.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 305978 4537985 CFF8240_0336 Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L25/general stress protein Ctc YP_891538.1 305442 D 360106 CDS YP_891539.1 118474844 4538718 305978..306523 1 NC_008599.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 306523 pth 4538718 pth Campylobacter fetus subsp. fetus 82-40 peptidyl-tRNA hydrolase YP_891539.1 305978 D 360106 CDS YP_891540.1 118475146 4539208 306597..307730 1 NC_008599.1 identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047; carboxynorspermidine decarboxylase 307730 nspC 4539208 nspC Campylobacter fetus subsp. fetus 82-40 carboxynorspermidine decarboxylase YP_891540.1 306597 D 360106 CDS YP_891541.1 118474077 4538740 307814..308413 1 NC_008599.1 identified by match to protein family HMM PF01206; hypothetical protein 308413 4538740 CFF8240_0339 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891541.1 307814 D 360106 CDS YP_891542.1 118475701 4539018 308472..309425 1 NC_008599.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase 309425 selD 4539018 selD Campylobacter fetus subsp. fetus 82-40 selenide, water dikinase YP_891542.1 308472 D 360106 CDS YP_891543.1 118474110 4538659 309435..310061 1 NC_008599.1 identified by match to protein family HMM PF00881; nitroreductase family protein 310061 4538659 CFF8240_0341 Campylobacter fetus subsp. fetus 82-40 nitroreductase family protein YP_891543.1 309435 D 360106 CDS YP_891544.1 118475475 4538585 310072..311145 1 NC_008599.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 311145 flhB 4538585 flhB Campylobacter fetus subsp. fetus 82-40 flagellar biosynthesis protein FlhB YP_891544.1 310072 D 360106 CDS YP_891545.1 118474735 4538548 complement(311191..312363) 1 NC_008599.1 identified by match to protein family HMM PF00999; match to protein family HMM PF06965; match to protein family HMM TIGR00773; Na+/H+ antiporter NhaA 312363 nhaA 4538548 nhaA Campylobacter fetus subsp. fetus 82-40 Na+/H+ antiporter NhaA YP_891545.1 311191 R 360106 CDS YP_891546.1 118475624 4538289 complement(312717..315548) 1 NC_008599.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 315548 uvrA 4538289 uvrA Campylobacter fetus subsp. fetus 82-40 excinuclease ABC subunit A YP_891546.1 312717 R 360106 CDS YP_891547.1 118474227 4538272 315552..315668 1 NC_008599.1 hypothetical protein 315668 4538272 CFF8240_0345 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891547.1 315552 D 360106 CDS YP_891548.1 118475056 4538800 315785..317443 1 NC_008599.1 identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; sodium-dependent transporter 317443 4538800 CFF8240_0346 Campylobacter fetus subsp. fetus 82-40 sodium-dependent transporter YP_891548.1 315785 D 360106 CDS YP_891549.1 118474296 4538994 complement(317466..318209) 1 NC_008599.1 identified by match to protein family HMM PF01925; hypothetical protein 318209 4538994 CFF8240_0347 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891549.1 317466 R 360106 CDS YP_891550.1 118475718 4538751 complement(318231..318959) 1 NC_008599.1 identified by match to protein family HMM PF01925; hypothetical protein 318959 4538751 CFF8240_0348 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891550.1 318231 R 360106 CDS YP_891551.1 118474488 4537828 319021..319527 1 NC_008599.1 identified by match to protein family HMM PF03625; hypothetical protein 319527 4537828 CFF8240_0349 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891551.1 319021 D 360106 CDS YP_891552.1 118475503 4539476 319719..320978 1 NC_008599.1 identified by match to protein family HMM PF00425; anthranilate synthase component 1 320978 4539476 CFF8240_0350 Campylobacter fetus subsp. fetus 82-40 anthranilate synthase component 1 YP_891552.1 319719 D 360106 CDS YP_891553.1 118474308 4539006 320975..322570 1 NC_008599.1 identified by match to protein family HMM PF00117; match to protein family HMM PF00591; match to protein family HMM TIGR00566; match to protein family HMM TIGR01245; anthranilate synthase component II 322570 4539006 CFF8240_0351 Campylobacter fetus subsp. fetus 82-40 anthranilate synthase component II YP_891553.1 320975 D 360106 CDS YP_891554.1 118475283 4539134 322567..323172 1 NC_008599.1 identified by match to protein family HMM PF00697; N-(5'phosphoribosyl)anthranilate isomerase 323172 trpF 4539134 trpF Campylobacter fetus subsp. fetus 82-40 N-(5'phosphoribosyl)anthranilate isomerase YP_891554.1 322567 D 360106 CDS YP_891555.1 118474206 4538523 323169..324350 1 NC_008599.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 324350 trpB 4538523 trpB Campylobacter fetus subsp. fetus 82-40 tryptophan synthase subunit beta YP_891555.1 323169 D 360106 CDS YP_891556.1 118475443 4539218 324343..325092 1 NC_008599.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 325092 trpA 4539218 trpA Campylobacter fetus subsp. fetus 82-40 tryptophan synthase subunit alpha YP_891556.1 324343 D 360106 CDS YP_891557.1 118474485 4537825 325241..325660 1 NC_008599.1 hypothetical protein 325660 4537825 CFF8240_0355 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891557.1 325241 D 360106 CDS YP_891558.1 118475399 4538876 325657..325962 1 NC_008599.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 325962 fliN 4538876 fliN Campylobacter fetus subsp. fetus 82-40 flagellar motor switch protein YP_891558.1 325657 D 360106 CDS YP_891559.1 118474731 4538544 325959..326906 1 NC_008599.1 hypothetical protein 326906 4538544 CFF8240_0357 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891559.1 325959 D 360106 CDS YP_891560.1 118475072 4538817 complement(326946..327515) 1 NC_008599.1 hypothetical protein 327515 4538817 CFF8240_0358 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891560.1 326946 R 360106 CDS YP_891561.1 118474153 4538040 complement(327541..328206) 1 NC_008599.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdate ABC transporter permease 328206 modB 4538040 modB Campylobacter fetus subsp. fetus 82-40 molybdate ABC transporter permease YP_891561.1 327541 R 360106 CDS YP_891562.1 118475334 4538615 complement(328203..329054) 1 NC_008599.1 identified by match to protein family HMM PF00005; molybdenum transport ATP-binding protein 329054 4538615 CFF8240_0360 Campylobacter fetus subsp. fetus 82-40 molybdenum transport ATP-binding protein YP_891562.1 328203 R 360106 CDS YP_891563.1 118474373 4538917 complement(329051..329425) 1 NC_008599.1 hypothetical protein 329425 4538917 CFF8240_0361 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891563.1 329051 R 360106 CDS YP_891564.1 118474610 4538120 complement(329425..330165) 1 NC_008599.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdate ABC transporter periplasmic molybdate-binding protein 330165 modA 4538120 modA Campylobacter fetus subsp. fetus 82-40 molybdate ABC transporter periplasmic molybdate-binding protein YP_891564.1 329425 R 360106 CDS YP_891565.1 118475356 4538463 complement(330309..331100) 1 NC_008599.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03459; match to protein family HMM TIGR00638; ModE family transcriptional regulator 331100 4538463 CFF8240_0363 Campylobacter fetus subsp. fetus 82-40 ModE family transcriptional regulator YP_891565.1 330309 R 360106 CDS YP_891566.1 118474953 4537990 331264..331977 1 NC_008599.1 identified by match to protein family HMM PF04333; VacJ family lipoprotein 331977 4537990 CFF8240_0364 Campylobacter fetus subsp. fetus 82-40 VacJ family lipoprotein YP_891566.1 331264 D 360106 CDS YP_891567.1 118474241 4537874 331980..332579 1 NC_008599.1 identified by match to protein family HMM PF05494; toluene tolerance protein Ttg2D 332579 ttg2D 4537874 ttg2D Campylobacter fetus subsp. fetus 82-40 toluene tolerance protein Ttg2D YP_891567.1 331980 D 360106 CDS YP_891568.1 118475581 4539242 332579..335044 1 NC_008599.1 putative integral membrane protein 335044 4539242 CFF8240_0367 Campylobacter fetus subsp. fetus 82-40 putative integral membrane protein YP_891568.1 332579 D 360106 CDS YP_891569.1 118474625 4538603 complement(335017..335592) 1 NC_008599.1 identified by match to protein family HMM PF04972; transport-associated 335592 4538603 CFF8240_0366 Campylobacter fetus subsp. fetus 82-40 transport-associated YP_891569.1 335017 R 360106 CDS YP_891570.1 118475273 4539124 335852..339979 1 NC_008599.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor 339979 4539124 CFF8240_0368 Campylobacter fetus subsp. fetus 82-40 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor YP_891570.1 335852 D 360106 CDS YP_891571.1 118474511 4539290 339982..340833 1 NC_008599.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 340833 hisZ 4539290 hisZ Campylobacter fetus subsp. fetus 82-40 ATP phosphoribosyltransferase regulatory subunit YP_891571.1 339982 D 360106 CDS YP_891572.1 118475039 4538435 340844..342094 1 NC_008599.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 342094 purA 4538435 purA Campylobacter fetus subsp. fetus 82-40 adenylosuccinate synthetase YP_891572.1 340844 D 360106 CDS YP_891573.1 118474434 4538979 342091..342516 1 NC_008599.1 hypothetical protein 342516 4538979 CFF8240_0371 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891573.1 342091 D 360106 CDS YP_891574.1 118475605 4539501 342513..343046 1 NC_008599.1 pdp protein 343046 4539501 CFF8240_0372 Campylobacter fetus subsp. fetus 82-40 pdp protein YP_891574.1 342513 D 360106 CDS YP_891575.1 118474830 4538141 343173..343724 1 NC_008599.1 identified by match to protein family HMM PF04368; hypothetical protein 343724 4538141 CFF8240_0373 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891575.1 343173 D 360106 CDS YP_891576.1 118474403 4539159 343724..344842 1 NC_008599.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 344842 carA 4539159 carA Campylobacter fetus subsp. fetus 82-40 carbamoyl phosphate synthase small subunit YP_891576.1 343724 D 360106 CDS YP_891577.1 118475019 4538060 344842..345507 1 NC_008599.1 hypothetical protein 345507 4538060 CFF8240_0375 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891577.1 344842 D 360106 CDS YP_891578.1 118475391 4538867 345504..346742 1 NC_008599.1 identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; PAS/PAC sensor signal transduction histidine kinase 346742 4538867 CFF8240_0376 Campylobacter fetus subsp. fetus 82-40 PAS/PAC sensor signal transduction histidine kinase YP_891578.1 345504 D 360106 CDS YP_891579.1 118475245 4538409 346735..347415 1 NC_008599.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 347415 4538409 CFF8240_0377 Campylobacter fetus subsp. fetus 82-40 DNA-binding response regulator YP_891579.1 346735 D 360106 CDS YP_891580.1 118475616 4538281 347572..349041 1 NC_008599.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 349041 ccoN 4538281 ccoN Campylobacter fetus subsp. fetus 82-40 cbb3-type cytochrome c oxidase subunit I YP_891580.1 347572 D 360106 CDS YP_891581.1 118474740 4538766 349052..349717 1 NC_008599.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 349717 ccoO 4538766 ccoO Campylobacter fetus subsp. fetus 82-40 cbb3-type cytochrome c oxidase subunit II YP_891581.1 349052 D 360106 CDS YP_891582.1 118475709 4539026 349728..349958 1 NC_008599.1 identified by match to protein family HMM TIGR02736; cytochrome c oxidase, Cbb3-type, CcoQ subunit 349958 4539026 CFF8240_0380 Campylobacter fetus subsp. fetus 82-40 cytochrome c oxidase, Cbb3-type, CcoQ subunit YP_891582.1 349728 D 360106 CDS YP_891583.1 118474742 4538768 349955..350818 1 NC_008599.1 identified by match to protein family HMM PF00034; match to protein family HMM TIGR00782; cytochrome c oxidase, Cbb3-type, subunit III 350818 ccoP 4538768 ccoP Campylobacter fetus subsp. fetus 82-40 cytochrome c oxidase, Cbb3-type, subunit III YP_891583.1 349955 D 360106 CDS YP_891584.1 118475012 4538052 350820..351038 1 NC_008599.1 hypothetical protein 351038 4538052 CFF8240_0382 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891584.1 350820 D 360106 CDS YP_891585.1 118474792 4539433 351154..351738 1 NC_008599.1 hypothetical protein 351738 4539433 CFF8240_0383 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891585.1 351154 D 360106 CDS YP_891586.1 118474949 4537986 351742..352275 1 NC_008599.1 putative lipoprotein 352275 4537986 CFF8240_0384 Campylobacter fetus subsp. fetus 82-40 putative lipoprotein YP_891586.1 351742 D 360106 CDS YP_891587.1 118475773 4539035 352256..354616 1 NC_008599.1 hypothetical protein 354616 4539035 CFF8240_0385 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891587.1 352256 D 360106 CDS YP_891588.1 118474774 4538841 354613..357378 1 NC_008599.1 identified by match to protein family HMM PF00580; putative recombination protein RecB 357378 4538841 CFF8240_0386 Campylobacter fetus subsp. fetus 82-40 putative recombination protein RecB YP_891588.1 354613 D 360106 CDS YP_891589.1 118475549 4538155 357457..357882 1 NC_008599.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 357882 rplM 4538155 rplM Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L13 YP_891589.1 357457 D 360106 CDS YP_891590.1 118475441 4539354 357885..358274 1 NC_008599.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 358274 rpsI 4539354 rpsI Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S9 YP_891590.1 357885 D 360106 CDS YP_891591.1 118474477 4537959 358574..359611 1 NC_008599.1 identified by match to protein family HMM PF00691; outer membrane fibronectin-binding protein 359611 4537959 CFF8240_0389 Campylobacter fetus subsp. fetus 82-40 outer membrane fibronectin-binding protein YP_891591.1 358574 D 360106 CDS YP_891592.1 118475214 4538259 359617..360441 1 NC_008599.1 identified by match to protein family HMM PF00924; MscS mechanosensitive ion channel 360441 4538259 CFF8240_0390 Campylobacter fetus subsp. fetus 82-40 MscS mechanosensitive ion channel YP_891592.1 359617 D 360106 CDS YP_891593.1 118474263 4537972 360450..361100 1 NC_008599.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; phosphoglycolate phosphatase 361100 4537972 CFF8240_0391 Campylobacter fetus subsp. fetus 82-40 phosphoglycolate phosphatase YP_891593.1 360450 D 360106 CDS YP_891594.1 118474239 4537872 361290..364844 1 NC_008599.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate:ferredoxin (flavodoxin) oxidoreductase 364844 nifJ 4537872 nifJ Campylobacter fetus subsp. fetus 82-40 pyruvate:ferredoxin (flavodoxin) oxidoreductase YP_891594.1 361290 D 360106 CDS YP_891595.1 118474982 4537863 364956..365516 1 NC_008599.1 hypothetical protein 365516 4537863 CFF8240_0393 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891595.1 364956 D 360106 CDS YP_891596.1 118475696 4539013 365543..366154 1 NC_008599.1 hypothetical protein 366154 4539013 CFF8240_0394 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891596.1 365543 D 360106 CDS YP_891597.1 118474720 4538533 366141..366569 1 NC_008599.1 hypothetical protein 366569 4538533 CFF8240_0395 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891597.1 366141 D 360106 CDS YP_891598.1 118474536 4538064 366787..368007 1 NC_008599.1 identified by match to protein family HMM PF05538; major outer membrane protein 368007 4538064 CFF8240_0396 Campylobacter fetus subsp. fetus 82-40 major outer membrane protein YP_891598.1 366787 D 360106 CDS YP_891599.1 118474408 4537792 368284..369504 1 NC_008599.1 identified by match to protein family HMM PF05538; major outer membrane protein 369504 4537792 CFF8240_0397 Campylobacter fetus subsp. fetus 82-40 major outer membrane protein YP_891599.1 368284 D 360106 CDS YP_891600.1 118475161 4537774 369628..370197 1 NC_008599.1 identified by match to protein family HMM PF00034; cytochrome c family protein 370197 4537774 CFF8240_0398 Campylobacter fetus subsp. fetus 82-40 cytochrome c family protein YP_891600.1 369628 D 360106 CDS YP_891601.1 118474128 4538329 370342..371460 1 NC_008599.1 identified by match to protein family HMM PF01094; branched-chain amino-acid ABC transport system periplasmic binding protein 371460 4538329 CFF8240_0399 Campylobacter fetus subsp. fetus 82-40 branched-chain amino-acid ABC transport system periplasmic binding protein YP_891601.1 370342 D 360106 CDS YP_891602.1 118474101 4538648 371735..372631 1 NC_008599.1 identified by match to protein family HMM PF02653; hydrophobic amino acid ABC transporter permease/ATP-binding protein 372631 4538648 CFF8240_0400 Campylobacter fetus subsp. fetus 82-40 hydrophobic amino acid ABC transporter permease/ATP-binding protein YP_891602.1 371735 D 360106 CDS YP_891603.1 118475595 4539256 372634..373689 1 NC_008599.1 identified by match to protein family HMM PF02653; ABC transport system permease 373689 4539256 CFF8240_0401 Campylobacter fetus subsp. fetus 82-40 ABC transport system permease YP_891603.1 372634 D 360106 CDS YP_891604.1 118474621 4538599 373686..374450 1 NC_008599.1 identified by match to protein family HMM PF00005; high affinity branched-chain amino acid ABC transporter ATP-binding protein 374450 4538599 CFF8240_0402 Campylobacter fetus subsp. fetus 82-40 high affinity branched-chain amino acid ABC transporter ATP-binding protein YP_891604.1 373686 D 360106 CDS YP_891605.1 118475348 4538455 374447..375142 1 NC_008599.1 identified by match to protein family HMM PF00005; high affinity branched-chain amino acid ABC transporter ATP-binding protein 375142 4538455 CFF8240_0403 Campylobacter fetus subsp. fetus 82-40 high affinity branched-chain amino acid ABC transporter ATP-binding protein YP_891605.1 374447 D 360106 CDS YP_891606.1 118475397 4538874 375213..378287 1 NC_008599.1 identified by match to protein family HMM PF01578; CcmF/CcyK/CcsA family cytochrome c biogenesis protein 378287 4538874 CFF8240_0404 Campylobacter fetus subsp. fetus 82-40 CcmF/CcyK/CcsA family cytochrome c biogenesis protein YP_891606.1 375213 D 360106 CDS YP_891607.1 118475647 4538680 378354..378794 1 NC_008599.1 hypothetical protein 378794 4538680 CFF8240_0406 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891607.1 378354 D 360106 CDS YP_891608.1 118474083 4537896 complement(378784..379236) 1 NC_008599.1 identified by match to protein family HMM PF04608; phosphatidylglycerophosphatase A 379236 4537896 CFF8240_0405 Campylobacter fetus subsp. fetus 82-40 phosphatidylglycerophosphatase A YP_891608.1 378784 R 360106 CDS YP_891609.1 118474120 4538321 complement(379257..380333) 1 NC_008599.1 ATP-sulfurylase family protein 380333 4538321 CFF8240_0407 Campylobacter fetus subsp. fetus 82-40 ATP-sulfurylase family protein YP_891609.1 379257 R 360106 CDS YP_891610.1 118475081 4538166 complement(380413..381303) 1 NC_008599.1 identified by match to protein family HMM PF00072; response regulator receiver domain-containing protein 381303 4538166 CFF8240_0408 Campylobacter fetus subsp. fetus 82-40 response regulator receiver domain-containing protein YP_891610.1 380413 R 360106 CDS YP_891611.1 118474192 4537765 complement(381300..382418) 1 NC_008599.1 bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 382418 ispDF 4537765 ispDF Campylobacter fetus subsp. fetus 82-40 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein YP_891611.1 381300 R 360106 CDS YP_891612.1 118475288 4539139 382570..383922 1 NC_008599.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 383922 thiC 4539139 thiC Campylobacter fetus subsp. fetus 82-40 thiamine biosynthesis protein ThiC YP_891612.1 382570 D 360106 CDS YP_891613.1 118475562 4538441 383919..384995 1 NC_008599.1 Mrp protein 384995 mrp 4538441 mrp Campylobacter fetus subsp. fetus 82-40 Mrp protein YP_891613.1 383919 D 360106 CDS YP_891614.1 118474189 4537762 385216..386406 1 NC_008599.1 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 386406 4537762 CFF8240_0412 Campylobacter fetus subsp. fetus 82-40 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_891614.1 385216 D 360106 CDS YP_891615.1 118475418 4538216 386419..388002 1 NC_008599.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463; ABC transporter ATP-binding protein 388002 4538216 CFF8240_0413 Campylobacter fetus subsp. fetus 82-40 ABC transporter ATP-binding protein YP_891615.1 386419 D 360106 CDS YP_891616.1 118474349 4537915 complement(388097..388837) 1 NC_008599.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 388837 frdB 4537915 frdB Campylobacter fetus subsp. fetus 82-40 fumarate reductase iron-sulfur subunit YP_891616.1 388097 R 360106 CDS YP_891617.1 118475601 4539497 complement(388809..390797) 1 NC_008599.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 390797 4539497 CFF8240_0415 Campylobacter fetus subsp. fetus 82-40 fumarate reductase flavoprotein subunit YP_891617.1 388809 R 360106 CDS YP_891618.1 118474758 4538824 complement(390794..391570) 1 NC_008599.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 391570 4538824 CFF8240_0416 Campylobacter fetus subsp. fetus 82-40 fumarate reductase cytochrome b-556 subunit YP_891618.1 390794 R 360106 CDS YP_891619.1 118475330 4538611 complement(391831..392661) 1 NC_008599.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 392661 lgt 4538611 lgt Campylobacter fetus subsp. fetus 82-40 prolipoprotein diacylglyceryl transferase YP_891619.1 391831 R 360106 CDS YP_891620.1 118474550 4538079 complement(392654..393205) 1 NC_008599.1 hypothetical protein 393205 4538079 CFF8240_0418 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891620.1 392654 R 360106 CDS YP_891621.1 118474273 4539454 complement(393263..394405) 1 NC_008599.1 identified by match to protein family HMM PF00817; DNA polymerase IV 1 394405 4539454 CFF8240_0419 Campylobacter fetus subsp. fetus 82-40 DNA polymerase IV 1 YP_891621.1 393263 R 360106 CDS YP_891622.1 118475757 4538190 complement(396576..396779) 1 NC_008599.1 heavy metal transport/detoxification protein 396779 4538190 CFF8240_0421 Campylobacter fetus subsp. fetus 82-40 heavy metal transport/detoxification protein YP_891622.1 396576 R 360106 CDS YP_891623.1 118474990 4539515 complement(396776..397333) 1 NC_008599.1 identified by match to protein family HMM PF00583; acetyltransferase 397333 4539515 CFF8240_0422 Campylobacter fetus subsp. fetus 82-40 acetyltransferase YP_891623.1 396776 R 360106 CDS YP_891624.1 118474571 4538100 397626..398867 1 NC_008599.1 identified by match to protein family HMM PF03222; serine transporter 398867 4538100 CFF8240_0423 Campylobacter fetus subsp. fetus 82-40 serine transporter YP_891624.1 397626 D 360106 CDS YP_891625.1 118474323 4538854 398919..399626 1 NC_008599.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 399626 4538854 CFF8240_0424 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891625.1 398919 D 360106 CDS YP_891626.1 118475442 4539355 399652..400143 1 NC_008599.1 identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase 400143 4539355 CFF8240_0425 Campylobacter fetus subsp. fetus 82-40 peptidyl-prolyl cis-trans isomerase YP_891626.1 399652 D 360106 CDS YP_891627.1 118474683 4539568 400347..401660 1 NC_008599.1 identified by match to protein family HMM PF00375; aerobic C4-dicarboxylate transport protein 401660 4539568 CFF8240_0426 Campylobacter fetus subsp. fetus 82-40 aerobic C4-dicarboxylate transport protein YP_891627.1 400347 D 360106 CDS YP_891628.1 118474592 4538705 401804..403117 1 NC_008599.1 identified by match to protein family HMM PF00375; aerobic C4-dicarboxylate transport protein 403117 4538705 CFF8240_0427 Campylobacter fetus subsp. fetus 82-40 aerobic C4-dicarboxylate transport protein YP_891628.1 401804 D 360106 CDS YP_891629.1 118475564 4538443 complement(403179..403784) 1 NC_008599.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp family transcriptional regulator 403784 4538443 CFF8240_0428 Campylobacter fetus subsp. fetus 82-40 Crp family transcriptional regulator YP_891629.1 403179 R 360106 CDS YP_891630.1 118474995 4539520 403986..406367 1 NC_008599.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01409; trimethylamine-N-oxide reductase 2 406367 4539520 CFF8240_0429 Campylobacter fetus subsp. fetus 82-40 trimethylamine-N-oxide reductase 2 YP_891630.1 403986 D 360106 CDS YP_891631.1 118474399 4539155 407016..408665 1 NC_008599.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; histidine kinase A domain-containing protein 408665 4539155 CFF8240_0431 Campylobacter fetus subsp. fetus 82-40 histidine kinase A domain-containing protein YP_891631.1 407016 D 360106 CDS YP_891632.1 118475432 4539345 408662..409345 1 NC_008599.1 identified by match to protein family HMM PF00072; putative two-component regulator 409345 4539345 CFF8240_0432 Campylobacter fetus subsp. fetus 82-40 putative two-component regulator YP_891632.1 408662 D 360106 CDS YP_891633.1 118474667 4539550 409414..410100 1 NC_008599.1 disulfide isomerase 410100 4539550 CFF8240_0433 Campylobacter fetus subsp. fetus 82-40 disulfide isomerase YP_891633.1 409414 D 360106 CDS YP_891634.1 118475318 4539384 410111..410758 1 NC_008599.1 putative disulfide oxidoreductase 410758 4539384 CFF8240_0434 Campylobacter fetus subsp. fetus 82-40 putative disulfide oxidoreductase YP_891634.1 410111 D 360106 CDS YP_891635.1 118475320 4539386 410926..412716 1 NC_008599.1 identified by match to protein family HMM PF00593; TonB-dependent receptor domain-containing protein 412716 4539386 CFF8240_0435 Campylobacter fetus subsp. fetus 82-40 TonB-dependent receptor domain-containing protein YP_891635.1 410926 D 360106 CDS YP_891636.1 118474345 4538568 412798..414606 1 NC_008599.1 identified by match to protein family HMM PF05935; arylsulfotransferase 414606 4538568 CFF8240_0436 Campylobacter fetus subsp. fetus 82-40 arylsulfotransferase YP_891636.1 412798 D 360106 CDS YP_891637.1 118475076 4538821 414756..416834 1 NC_008599.1 identified by match to protein family HMM PF00350; GTP-binding protein 416834 4538821 CFF8240_0437 Campylobacter fetus subsp. fetus 82-40 GTP-binding protein YP_891637.1 414756 D 360106 CDS YP_891638.1 118474116 4538665 416828..418627 1 NC_008599.1 identified by match to protein family HMM PF00350; GTP-binding protein 418627 4538665 CFF8240_0438 Campylobacter fetus subsp. fetus 82-40 GTP-binding protein YP_891638.1 416828 D 360106 CDS YP_891639.1 118474394 4539150 418802..419668 1 NC_008599.1 hypothetical protein 419668 4539150 CFF8240_0439 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891639.1 418802 D 360106 CDS YP_891640.1 118475369 4538477 419710..422304 1 NC_008599.1 identified by match to protein family HMM PF00116; nitrous-oxide reductase 422304 4538477 CFF8240_0440 Campylobacter fetus subsp. fetus 82-40 nitrous-oxide reductase YP_891640.1 419710 D 360106 CDS YP_891641.1 118474597 4538107 422431..423198 1 NC_008599.1 hypothetical protein 423198 4538107 CFF8240_0441 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891641.1 422431 D 360106 CDS YP_891642.1 118475567 4538446 423195..424409 1 NC_008599.1 nitrous oxidase accessory protein 424409 4538446 CFF8240_0442 Campylobacter fetus subsp. fetus 82-40 nitrous oxidase accessory protein YP_891642.1 423195 D 360106 CDS YP_891643.1 118475563 4538442 424402..425076 1 NC_008599.1 identified by match to protein family HMM PF00037; iron-sulfur protein 425076 4538442 CFF8240_0443 Campylobacter fetus subsp. fetus 82-40 iron-sulfur protein YP_891643.1 424402 D 360106 CDS YP_891644.1 118474456 4539079 425079..425627 1 NC_008599.1 hypothetical protein 425627 4539079 CFF8240_0444 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891644.1 425079 D 360106 CDS YP_891645.1 118474528 4538016 425624..426073 1 NC_008599.1 hypothetical protein 426073 4538016 CFF8240_0445 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891645.1 425624 D 360106 CDS YP_891646.1 118475546 4538152 426078..426974 1 NC_008599.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02163; NapH/MauN family ferredoxin-type protein 426974 4538152 CFF8240_0446 Campylobacter fetus subsp. fetus 82-40 NapH/MauN family ferredoxin-type protein YP_891646.1 426078 D 360106 CDS YP_891647.1 118475675 4538495 426987..427640 1 NC_008599.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 427640 4538495 CFF8240_0447 Campylobacter fetus subsp. fetus 82-40 ABC transporter ATP-binding protein YP_891647.1 426987 D 360106 CDS YP_891648.1 118474866 4538316 427700..428464 1 NC_008599.1 multi-copper enzyme maturation ABC transporter permease 428464 4538316 CFF8240_0448 Campylobacter fetus subsp. fetus 82-40 multi-copper enzyme maturation ABC transporter permease YP_891648.1 427700 D 360106 CDS YP_891649.1 118475225 4539171 428461..428916 1 NC_008599.1 hypothetical protein 428916 4539171 CFF8240_0449 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891649.1 428461 D 360106 CDS YP_891650.1 118474068 4538731 complement(429465..430682) 1 NC_008599.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; putative putative two-component sensor 430682 4538731 CFF8240_0451 Campylobacter fetus subsp. fetus 82-40 putative putative two-component sensor YP_891650.1 429465 R 360106 CDS YP_891651.1 118475242 4538406 complement(430687..431355) 1 NC_008599.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; response regulator ompr 431355 4538406 CFF8240_0452 Campylobacter fetus subsp. fetus 82-40 response regulator ompr YP_891651.1 430687 R 360106 CDS YP_891652.1 118474085 4537898 complement(431369..432466) 1 NC_008599.1 identified by match to protein family HMM PF01292; nickel-dependent hydrogenases B-type cytochrome subunit family protein 432466 4537898 CFF8240_0453 Campylobacter fetus subsp. fetus 82-40 nickel-dependent hydrogenases B-type cytochrome subunit family protein YP_891652.1 431369 R 360106 CDS YP_891653.1 118475626 4538291 complement(432459..432965) 1 NC_008599.1 putative diheme cytochrome c 432965 4538291 CFF8240_0454 Campylobacter fetus subsp. fetus 82-40 putative diheme cytochrome c YP_891653.1 432459 R 360106 CDS YP_891654.1 118474342 4538565 complement(432975..433400) 1 NC_008599.1 hypothetical protein 433400 4538565 CFF8240_0455 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891654.1 432975 R 360106 CDS YP_891655.1 118475551 4538157 complement(433700..437194) 1 NC_008599.1 surface array protein 437194 4538157 CFF8240_0456 Campylobacter fetus subsp. fetus 82-40 surface array protein YP_891655.1 433700 R 360106 CDS YP_891656.1 118474103 4538650 complement(437482..438783) 1 NC_008599.1 identified by match to protein family HMM PF02321; protein SapF 438783 4538650 CFF8240_0457 Campylobacter fetus subsp. fetus 82-40 protein SapF YP_891656.1 437482 R 360106 CDS YP_891657.1 118475239 4538403 complement(438773..440056) 1 NC_008599.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; protein Sape 440056 4538403 CFF8240_0458 Campylobacter fetus subsp. fetus 82-40 protein Sape YP_891657.1 438773 R 360106 CDS YP_891658.1 118475755 4538188 complement(440056..441807) 1 NC_008599.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01842; hypothetical protein 441807 4538188 CFF8240_0459 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891658.1 440056 R 360106 CDS YP_891659.1 118475041 4538785 complement(441794..442936) 1 NC_008599.1 identified by match to protein family HMM PF07277; SapC protein 442936 4538785 CFF8240_0460 Campylobacter fetus subsp. fetus 82-40 SapC protein YP_891659.1 441794 R 360106 CDS YP_891660.1 118475545 4538151 443425..446250 1 NC_008599.1 surface layer protein SapB9 446250 4538151 CFF8240_0461 Campylobacter fetus subsp. fetus 82-40 surface layer protein SapB9 YP_891660.1 443425 D 360106 CDS YP_891661.1 118474582 4538695 complement(446985..450305) 1 NC_008599.1 surface array protein 450305 4538695 CFF8240_0462 Campylobacter fetus subsp. fetus 82-40 surface array protein YP_891661.1 446985 R 360106 CDS YP_891662.1 118475213 4538258 complement(450610..451998) 1 NC_008599.1 hypothetical protein 451998 4538258 CFF8240_0463 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891662.1 450610 R 360106 CDS YP_891663.1 118475515 4539489 complement(452228..456001) 1 NC_008599.1 surface array protein 456001 4539489 CFF8240_0464 Campylobacter fetus subsp. fetus 82-40 surface array protein YP_891663.1 452228 R 360106 CDS YP_891664.1 118474934 4538897 complement(460611..461027) 1 NC_008599.1 hypothetical protein 461027 4538897 CFF8240_0468 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891664.1 460611 R 360106 CDS YP_891665.1 118474347 4538570 461114..461908 1 NC_008599.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 461908 panB 4538570 panB Campylobacter fetus subsp. fetus 82-40 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_891665.1 461114 D 360106 CDS YP_891666.1 118475297 4539536 461892..462203 1 NC_008599.1 hypothetical protein 462203 4539536 CFF8240_0470 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891666.1 461892 D 360106 CDS YP_891667.1 118474580 4538693 462213..463244 1 NC_008599.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 463244 ruvB 4538693 ruvB Campylobacter fetus subsp. fetus 82-40 Holliday junction DNA helicase RuvB YP_891667.1 462213 D 360106 CDS YP_891668.1 118475422 4538220 463237..464340 1 NC_008599.1 identified by match to protein family HMM PF01594; acid membrane antigen A 464340 4538220 CFF8240_0472 Campylobacter fetus subsp. fetus 82-40 acid membrane antigen A YP_891668.1 463237 D 360106 CDS YP_891669.1 118474164 4539091 465407..466147 1 NC_008599.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 466147 4539091 CFF8240_0474 Campylobacter fetus subsp. fetus 82-40 ABC transporter ATP-binding protein YP_891669.1 465407 D 360106 CDS YP_891670.1 118475119 4539318 466137..467051 1 NC_008599.1 identified by match to protein family HMM PF02470; putative ABC transport system periplasmic substrate-binding protein 467051 4539318 CFF8240_0475 Campylobacter fetus subsp. fetus 82-40 putative ABC transport system periplasmic substrate-binding protein YP_891670.1 466137 D 360106 CDS YP_891671.1 118474113 4538662 467048..467584 1 NC_008599.1 hypothetical protein 467584 4538662 CFF8240_0476 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891671.1 467048 D 360106 CDS YP_891672.1 118475619 4538284 complement(467586..467990) 1 NC_008599.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; putative metalloprotease 467990 4538284 CFF8240_0477 Campylobacter fetus subsp. fetus 82-40 putative metalloprotease YP_891672.1 467586 R 360106 CDS YP_891673.1 118474624 4538602 complement(468408..471737) 1 NC_008599.1 surface layer protein SapA12 471737 4538602 CFF8240_0478 Campylobacter fetus subsp. fetus 82-40 surface layer protein SapA12 YP_891673.1 468408 R 360106 CDS YP_891674.1 118475516 4539490 complement(471970..472242) 1 NC_008599.1 identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; addiction module antitoxin 472242 4539490 CFF8240_0479 Campylobacter fetus subsp. fetus 82-40 addiction module antitoxin YP_891674.1 471970 R 360106 CDS YP_891675.1 118475171 4537784 complement(472235..472483) 1 NC_008599.1 hypothetical protein 472483 4537784 CFF8240_0480 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891675.1 472235 R 360106 CDS YP_891676.1 118474396 4539152 complement(472729..475494) 1 NC_008599.1 surface array protein 475494 4539152 CFF8240_0481 Campylobacter fetus subsp. fetus 82-40 surface array protein YP_891676.1 472729 R 360106 CDS YP_891677.1 118474897 4539052 475711..477285 1 NC_008599.1 identified by match to protein family HMM PF07804; match to protein family HMM PF07805; match to protein family HMM TIGR03071; hypothetical protein 477285 4539052 CFF8240_0482 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891677.1 475711 D 360106 CDS YP_891678.1 118474806 4539193 477273..477389 1 NC_008599.1 hypothetical protein 477389 4539193 CFF8240_0483 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891678.1 477273 D 360106 CDS YP_891679.1 118475623 4538288 complement(477568..480387) 1 NC_008599.1 hypothetical protein 480387 4538288 CFF8240_0484 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891679.1 477568 R 360106 CDS YP_891680.1 118475481 4538360 480544..481908 1 NC_008599.1 identified by match to protein family HMM PF01637; match to protein family HMM PF03008; ATPase 481908 4538360 CFF8240_0485 Campylobacter fetus subsp. fetus 82-40 ATPase YP_891680.1 480544 D 360106 CDS YP_891681.1 118475136 4539335 complement(482127..485447) 1 NC_008599.1 surface array protein 485447 4539335 CFF8240_0486 Campylobacter fetus subsp. fetus 82-40 surface array protein YP_891681.1 482127 R 360106 CDS YP_891682.1 118475657 4538953 485947..486723 1 NC_008599.1 surface array protein 486723 4538953 CFF8240_0487 Campylobacter fetus subsp. fetus 82-40 surface array protein YP_891682.1 485947 D 360106 CDS YP_891683.1 118474933 4538896 488225..488350 1 NC_008599.1 hypothetical protein 488350 4538896 CFF8240_0489 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891683.1 488225 D 360106 CDS YP_891684.1 118474822 4538133 complement(488696..492574) 1 NC_008599.1 surface array protein 492574 4538133 CFF8240_0490 Campylobacter fetus subsp. fetus 82-40 surface array protein YP_891684.1 488696 R 360106 CDS YP_891685.1 118475286 4539137 complement(492900..494045) 1 NC_008599.1 identified by match to protein family HMM PF00534; group 1 glycosyl transferase 494045 4539137 CFF8240_0491 Campylobacter fetus subsp. fetus 82-40 group 1 glycosyl transferase YP_891685.1 492900 R 360106 CDS YP_891686.1 118474374 4538918 complement(494042..496273) 1 NC_008599.1 identified by match to protein family HMM PF00534; mannosyltransferase A 496273 4538918 CFF8240_0492 Campylobacter fetus subsp. fetus 82-40 mannosyltransferase A YP_891686.1 494042 R 360106 CDS YP_891687.1 118474620 4538598 complement(496276..496461) 1 NC_008599.1 hypothetical protein 496461 4538598 CFF8240_0493 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891687.1 496276 R 360106 CDS YP_891688.1 118475370 4538478 complement(496461..497645) 1 NC_008599.1 identified by match to protein family HMM PF00005; ABC transporter 497645 4538478 CFF8240_0494 Campylobacter fetus subsp. fetus 82-40 ABC transporter YP_891688.1 496461 R 360106 CDS YP_891689.1 118474383 4538928 complement(497642..498406) 1 NC_008599.1 identified by match to protein family HMM PF01061; putative ABC-2 type transport system permease protein 498406 4538928 CFF8240_0495 Campylobacter fetus subsp. fetus 82-40 putative ABC-2 type transport system permease protein YP_891689.1 497642 R 360106 CDS YP_891690.1 118475126 4539325 498593..499708 1 NC_008599.1 identified by match to protein family HMM PF00534; group 1 glycosyl transferase 499708 4539325 CFF8240_0496 Campylobacter fetus subsp. fetus 82-40 group 1 glycosyl transferase YP_891690.1 498593 D 360106 CDS YP_891691.1 118474820 4538131 499680..500993 1 NC_008599.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025; undecaprenyl-phosphate galactosephosphotransferase 500993 4538131 CFF8240_0497 Campylobacter fetus subsp. fetus 82-40 undecaprenyl-phosphate galactosephosphotransferase YP_891691.1 499680 D 360106 CDS YP_891692.1 118475538 4538144 complement(500997..502337) 1 NC_008599.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 502337 radA 4538144 radA Campylobacter fetus subsp. fetus 82-40 DNA repair protein RadA YP_891692.1 500997 R 360106 CDS YP_891693.1 118475105 4539441 complement(502337..503206) 1 NC_008599.1 identified by match to protein family HMM PF00448; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 503206 ftsY 4539441 ftsY Campylobacter fetus subsp. fetus 82-40 signal recognition particle-docking protein FtsY YP_891693.1 502337 R 360106 CDS YP_891694.1 118474162 4539089 complement(503206..503760) 1 NC_008599.1 thiredoxin 503760 4539089 CFF8240_0500 Campylobacter fetus subsp. fetus 82-40 thiredoxin YP_891694.1 503206 R 360106 CDS YP_891695.1 118474839 4538713 503813..504442 1 NC_008599.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5,10-methenyltetrahydrofolate synthetase 504442 4538713 CFF8240_0501 Campylobacter fetus subsp. fetus 82-40 5,10-methenyltetrahydrofolate synthetase YP_891695.1 503813 D 360106 CDS YP_891696.1 118475670 4538966 504375..505928 1 NC_008599.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 505928 4538966 CFF8240_0502 Campylobacter fetus subsp. fetus 82-40 phosphodiesterase YP_891696.1 504375 D 360106 CDS YP_891697.1 118475470 4538580 505941..506525 1 NC_008599.1 hypothetical protein 506525 4538580 CFF8240_0503 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891697.1 505941 D 360106 CDS YP_891698.1 118474701 4538396 506534..507103 1 NC_008599.1 integral membrane protein 507103 4538396 CFF8240_0504 Campylobacter fetus subsp. fetus 82-40 integral membrane protein YP_891698.1 506534 D 360106 CDS YP_891699.1 118474913 4538935 507100..508389 1 NC_008599.1 hypothetical protein 508389 4538935 CFF8240_0505 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891699.1 507100 D 360106 CDS YP_891700.1 118474351 4537917 514941..515345 1 NC_008599.1 identified by match to protein family HMM PF00633; hypothetical protein 515345 4537917 CFF8240_0510 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891700.1 514941 D 360106 CDS YP_891701.1 118475580 4539241 515549..516634 1 NC_008599.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 516634 4539241 CFF8240_0511 Campylobacter fetus subsp. fetus 82-40 methyl-accepting chemotaxis protein YP_891701.1 515549 D 360106 CDS YP_891702.1 118475390 4538866 516735..518036 1 NC_008599.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate transaminase 518036 bioA 4538866 bioA Campylobacter fetus subsp. fetus 82-40 adenosylmethionine-8-amino-7-oxononanoate transaminase YP_891702.1 516735 D 360106 CDS YP_891703.1 118474773 4538840 complement(518029..518661) 1 NC_008599.1 identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 518661 nth 4538840 nth Campylobacter fetus subsp. fetus 82-40 endonuclease III YP_891703.1 518029 R 360106 CDS YP_891704.1 118474611 4538121 518760..519569 1 NC_008599.1 identified by match to protein family HMM PF00639; foldase protein PrsA 519569 4538121 CFF8240_0514 Campylobacter fetus subsp. fetus 82-40 foldase protein PrsA YP_891704.1 518760 D 360106 CDS YP_891705.1 118474472 4537954 519579..520643 1 NC_008599.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 520643 fbaA 4537954 fbaA Campylobacter fetus subsp. fetus 82-40 fructose-bisphosphate aldolase YP_891705.1 519579 D 360106 CDS YP_891706.1 118474966 4538003 520732..522057 1 NC_008599.1 hypothetical protein 522057 4538003 CFF8240_0516 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891706.1 520732 D 360106 CDS YP_891707.1 118474222 4538267 522044..523048 1 NC_008599.1 chemotaxis protein MotB 523048 4538267 CFF8240_0517 Campylobacter fetus subsp. fetus 82-40 chemotaxis protein MotB YP_891707.1 522044 D 360106 CDS YP_891708.1 118475600 4539496 523038..523910 1 NC_008599.1 hypothetical protein 523910 4539496 CFF8240_0518 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891708.1 523038 D 360106 CDS YP_891709.1 118474295 4538993 523934..525220 1 NC_008599.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 525220 hisD 4538993 hisD Campylobacter fetus subsp. fetus 82-40 histidinol dehydrogenase YP_891709.1 523934 D 360106 CDS YP_891710.1 118475555 4538161 525277..526029 1 NC_008599.1 identified by match to protein family HMM PF00669; flagellin 526029 4538161 CFF8240_0520 Campylobacter fetus subsp. fetus 82-40 flagellin YP_891710.1 525277 D 360106 CDS YP_891711.1 118475308 4539548 complement(526080..527951) 1 NC_008599.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 527951 4539548 CFF8240_0521 Campylobacter fetus subsp. fetus 82-40 RNA polymerase sigma factor RpoD YP_891711.1 526080 R 360106 CDS YP_891712.1 118474276 4539457 528108..528920 1 NC_008599.1 identified by match to protein family HMM PF00460; flagellar basal-body rod protein 528920 4539457 CFF8240_0522 Campylobacter fetus subsp. fetus 82-40 flagellar basal-body rod protein YP_891712.1 528108 D 360106 CDS YP_891713.1 118475132 4539331 528939..529727 1 NC_008599.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 529727 flgG 4539331 flgG Campylobacter fetus subsp. fetus 82-40 flagellar basal body rod protein FlgG YP_891713.1 528939 D 360106 CDS YP_891714.1 118474476 4537958 530025..531938 1 NC_008599.1 identified by match to protein family HMM PF03239; FTR1 family iron permease 531938 4537958 CFF8240_0524 Campylobacter fetus subsp. fetus 82-40 FTR1 family iron permease YP_891714.1 530025 D 360106 CDS YP_891715.1 118475129 4539328 531935..532456 1 NC_008599.1 hypothetical protein 532456 4539328 CFF8240_0525 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891715.1 531935 D 360106 CDS YP_891716.1 118474390 4539146 532629..533993 1 NC_008599.1 identified by match to protein family HMM PF04945; integral membrane protein 533993 4539146 CFF8240_0526 Campylobacter fetus subsp. fetus 82-40 integral membrane protein YP_891716.1 532629 D 360106 CDS YP_891717.1 118474856 4538305 533998..535242 1 NC_008599.1 identified by match to protein family HMM PF02687; ABC transport permease 535242 4538305 CFF8240_0527 Campylobacter fetus subsp. fetus 82-40 ABC transport permease YP_891717.1 533998 D 360106 CDS YP_891718.1 118475700 4539017 535229..536359 1 NC_008599.1 identified by match to protein family HMM PF02687; integral membrane protein-permease component, involved in lipoprotein release 536359 4539017 CFF8240_0528 Campylobacter fetus subsp. fetus 82-40 integral membrane protein-permease component, involved in lipoprotein release YP_891718.1 535229 D 360106 CDS YP_891719.1 118475073 4538818 536362..537024 1 NC_008599.1 identified by match to protein family HMM PF00005; ABC transport protein 537024 4538818 CFF8240_0529 Campylobacter fetus subsp. fetus 82-40 ABC transport protein YP_891719.1 536362 D 360106 CDS YP_891720.1 118474754 4538780 537021..537518 1 NC_008599.1 hypothetical protein 537518 4538780 CFF8240_0530 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891720.1 537021 D 360106 CDS YP_891721.1 118475746 4538355 537590..538561 1 NC_008599.1 identified by match to protein family HMM PF04371; peptidyl-arginine deiminase 538561 4538355 CFF8240_0531 Campylobacter fetus subsp. fetus 82-40 peptidyl-arginine deiminase YP_891721.1 537590 D 360106 CDS YP_891722.1 118474542 4538071 538558..539433 1 NC_008599.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; ferrous-iron efflux pump FieF 539433 4538071 CFF8240_0532 Campylobacter fetus subsp. fetus 82-40 ferrous-iron efflux pump FieF YP_891722.1 538558 D 360106 CDS YP_891723.1 118474614 4538592 539430..540299 1 NC_008599.1 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 540299 4538592 CFF8240_0533 Campylobacter fetus subsp. fetus 82-40 carbon-nitrogen family hydrolase YP_891723.1 539430 D 360106 CDS YP_891724.1 118474425 4538970 complement(540338..541552) 1 NC_008599.1 identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter 541552 gltS 4538970 gltS Campylobacter fetus subsp. fetus 82-40 sodium/glutamate symporter YP_891724.1 540338 R 360106 CDS YP_891725.1 118474905 4539060 complement(541644..542264) 1 NC_008599.1 identified by match to protein family HMM PF01863; hypothetical protein 542264 4539060 CFF8240_0535 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891725.1 541644 R 360106 CDS YP_891726.1 118474212 4538529 complement(542240..543562) 1 NC_008599.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; mate efflux family protein 543562 4538529 CFF8240_0536 Campylobacter fetus subsp. fetus 82-40 mate efflux family protein YP_891726.1 542240 R 360106 CDS YP_891727.1 118474268 4537977 complement(543559..544431) 1 NC_008599.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensory trasnduction histidine kinase 544431 4537977 CFF8240_0537 Campylobacter fetus subsp. fetus 82-40 sensory trasnduction histidine kinase YP_891727.1 543559 R 360106 CDS YP_891728.1 118475654 4538950 complement(544425..545093) 1 NC_008599.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; sensory transduction regulator 545093 4538950 CFF8240_0538 Campylobacter fetus subsp. fetus 82-40 sensory transduction regulator YP_891728.1 544425 R 360106 CDS YP_891729.1 118475159 4537772 545297..546595 1 NC_008599.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 546595 4537772 CFF8240_0539 Campylobacter fetus subsp. fetus 82-40 major facilitator superfamily protein YP_891729.1 545297 D 360106 CDS YP_891730.1 118474387 4539143 546599..548533 1 NC_008599.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463; ABC transporter ATP-binding protein uup 548533 4539143 CFF8240_0540 Campylobacter fetus subsp. fetus 82-40 ABC transporter ATP-binding protein uup YP_891730.1 546599 D 360106 CDS YP_891731.1 118474224 4538269 548543..549919 1 NC_008599.1 identified by match to protein family HMM PF00209; sodium-dependent transporter 549919 4538269 CFF8240_0541 Campylobacter fetus subsp. fetus 82-40 sodium-dependent transporter YP_891731.1 548543 D 360106 CDS YP_891732.1 118475602 4539498 549968..551167 1 NC_008599.1 identified by match to protein family HMM PF01435; M48 family peptidase 551167 4539498 CFF8240_0542 Campylobacter fetus subsp. fetus 82-40 M48 family peptidase YP_891732.1 549968 D 360106 CDS YP_891733.1 118474800 4539187 551154..551939 1 NC_008599.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; bifunctional methyltransferase 551939 4539187 CFF8240_0543 Campylobacter fetus subsp. fetus 82-40 bifunctional methyltransferase YP_891733.1 551154 D 360106 CDS YP_891734.1 118475473 4538583 551950..552429 1 NC_008599.1 putative integral membrane protein 552429 4538583 CFF8240_0545 Campylobacter fetus subsp. fetus 82-40 putative integral membrane protein YP_891734.1 551950 D 360106 CDS YP_891735.1 118475357 4538464 complement(552426..552776) 1 NC_008599.1 hypothetical protein 552776 4538464 CFF8240_0544 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891735.1 552426 R 360106 CDS YP_891736.1 118474499 4539278 complement(553217..554464) 1 NC_008599.1 hypothetical protein 554464 4539278 CFF8240_0546 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891736.1 553217 R 360106 CDS YP_891737.1 118474440 4538986 complement(554461..555102) 1 NC_008599.1 uracil-DNA glycosylase superfamily protein 555102 4538986 CFF8240_0547 Campylobacter fetus subsp. fetus 82-40 uracil-DNA glycosylase superfamily protein YP_891737.1 554461 R 360106 CDS YP_891738.1 118475177 4539357 complement(555142..555615) 1 NC_008599.1 identified by match to protein family HMM PF00583; acetyltransferase 555615 4539357 CFF8240_0548 Campylobacter fetus subsp. fetus 82-40 acetyltransferase YP_891738.1 555142 R 360106 CDS YP_891739.1 118474796 4539183 complement(555682..556965) 1 NC_008599.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 556965 amt 4539183 amt Campylobacter fetus subsp. fetus 82-40 ammonium transporter YP_891739.1 555682 R 360106 CDS YP_891740.1 118475592 4539253 complement(556975..557313) 1 NC_008599.1 identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II 557313 4539253 CFF8240_0550 Campylobacter fetus subsp. fetus 82-40 nitrogen regulatory protein P-II YP_891740.1 556975 R 360106 CDS YP_891741.1 118474371 4538915 557520..557654 1 NC_008599.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 557654 rpmH 4538915 rpmH Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L34 YP_891741.1 557520 D 360106 CDS YP_891742.1 118475116 4539452 557675..558007 1 NC_008599.1 identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component 558007 rnpA 4539452 rnpA Campylobacter fetus subsp. fetus 82-40 ribonuclease P protein component YP_891742.1 557675 D 360106 CDS YP_891743.1 118474690 4538385 558342..559937 1 NC_008599.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 559937 4538385 CFF8240_0553 Campylobacter fetus subsp. fetus 82-40 putative inner membrane protein translocase component YidC YP_891743.1 558342 D 360106 CDS YP_891744.1 118475440 4539353 559927..560880 1 NC_008599.1 hypothetical protein 560880 4539353 CFF8240_0554 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891744.1 559927 D 360106 CDS YP_891745.1 118474837 4538711 560877..562193 1 NC_008599.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 562193 trmE 4538711 trmE Campylobacter fetus subsp. fetus 82-40 tRNA modification GTPase TrmE YP_891745.1 560877 D 360106 CDS YP_891746.1 118475518 4538221 562212..564407 1 NC_008599.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 564407 purL 4538221 purL Campylobacter fetus subsp. fetus 82-40 phosphoribosylformylglycinamidine synthase II YP_891746.1 562212 D 360106 CDS YP_891747.1 118474971 4537852 564407..565147 1 NC_008599.1 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 565147 4537852 CFF8240_0557 Campylobacter fetus subsp. fetus 82-40 DnaJ domain-containing protein YP_891747.1 564407 D 360106 CDS YP_891748.1 118474884 4538643 565175..566707 1 NC_008599.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 566707 purH 4538643 purH Campylobacter fetus subsp. fetus 82-40 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_891748.1 565175 D 360106 CDS YP_891749.1 118475198 4538243 566853..567251 1 NC_008599.1 hypothetical protein 567251 4538243 CFF8240_0559 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891749.1 566853 D 360106 CDS YP_891750.1 118474250 4537883 567244..568425 1 NC_008599.1 hypothetical protein 568425 4537883 CFF8240_0560 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891750.1 567244 D 360106 CDS YP_891751.1 118475410 4538208 568422..568703 1 NC_008599.1 identified by match to protein family HMM PF01883; hypothetical protein 568703 4538208 CFF8240_0561 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891751.1 568422 D 360106 CDS YP_891752.1 118474465 4537947 568793..570385 1 NC_008599.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; putative methyl-accepting chemotaxis protein 570385 4537947 CFF8240_0562 Campylobacter fetus subsp. fetus 82-40 putative methyl-accepting chemotaxis protein YP_891752.1 568793 D 360106 CDS YP_891753.1 118475712 4538745 complement(570443..571354) 1 NC_008599.1 identified by match to protein family HMM PF01063; D-alanine aminotransferase 571354 4538745 CFF8240_0563 Campylobacter fetus subsp. fetus 82-40 D-alanine aminotransferase YP_891753.1 570443 R 360106 CDS YP_891754.1 118475733 4538342 571411..571917 1 NC_008599.1 hypothetical protein 571917 4538342 CFF8240_0565 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891754.1 571411 D 360106 CDS YP_891755.1 118474665 4539413 complement(571903..573864) 1 NC_008599.1 hypothetical protein 573864 4539413 CFF8240_0564 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891755.1 571903 R 360106 CDS YP_891756.1 118474753 4538779 complement(573864..574145) 1 NC_008599.1 hypothetical protein 574145 4538779 CFF8240_0566 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891756.1 573864 R 360106 CDS YP_891757.1 118474367 4538911 complement(574142..575065) 1 NC_008599.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 575065 mraW 4538911 mraW Campylobacter fetus subsp. fetus 82-40 S-adenosyl-methyltransferase MraW YP_891757.1 574142 R 360106 CDS YP_891758.1 118475124 4539323 575174..575767 1 NC_008599.1 identified by match to protein family HMM PF00596; hypothetical protein 575767 4539323 CFF8240_0568 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891758.1 575174 D 360106 CDS YP_891759.1 118475291 4539530 575888..577345 1 NC_008599.1 putative peptidyl-prolyl cis-trans isomerase D-like protein 577345 4539530 CFF8240_0569 Campylobacter fetus subsp. fetus 82-40 putative peptidyl-prolyl cis-trans isomerase D-like protein YP_891759.1 575888 D 360106 CDS YP_891760.1 118474196 4538513 577351..578835 1 NC_008599.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 578835 ftsA 4538513 ftsA Campylobacter fetus subsp. fetus 82-40 cell division protein FtsA YP_891760.1 577351 D 360106 CDS YP_891761.1 118474994 4539519 578849..580003 1 NC_008599.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 580003 ftsZ 4539519 ftsZ Campylobacter fetus subsp. fetus 82-40 cell division protein FtsZ YP_891761.1 578849 D 360106 CDS YP_891762.1 118474855 4538304 complement(580021..581961) 1 NC_008599.1 identified by match to protein family HMM PF00877; NLP/P60 581961 4538304 CFF8240_0572 Campylobacter fetus subsp. fetus 82-40 NLP/P60 YP_891762.1 580021 R 360106 CDS YP_891763.1 118475569 4538448 582019..583326 1 NC_008599.1 hypothetical protein 583326 4538448 CFF8240_0573 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891763.1 582019 D 360106 CDS YP_891764.1 118474593 4538103 583323..583793 1 NC_008599.1 hypothetical protein 583793 4538103 CFF8240_0574 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891764.1 583323 D 360106 CDS YP_891765.1 118475445 4539221 complement(583839..584354) 1 NC_008599.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 584354 lolA 4539221 lolA Campylobacter fetus subsp. fetus 82-40 outer-membrane lipoprotein carrier protein YP_891765.1 583839 R 360106 CDS YP_891766.1 118475233 4538397 584488..587055 1 NC_008599.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 587055 secA 4538397 secA Campylobacter fetus subsp. fetus 82-40 preprotein translocase subunit SecA YP_891766.1 584488 D 360106 CDS YP_891767.1 118474523 4538011 587048..588247 1 NC_008599.1 identified by match to protein family HMM PF02687; permease 588247 4538011 CFF8240_0577 Campylobacter fetus subsp. fetus 82-40 permease YP_891767.1 587048 D 360106 CDS YP_891768.1 118475407 4538205 complement(588250..588543) 1 NC_008599.1 N-terminal methylation 588543 4538205 CFF8240_0578 Campylobacter fetus subsp. fetus 82-40 N-terminal methylation YP_891768.1 588250 R 360106 CDS YP_891769.1 118474965 4538002 complement(588992..590164) 1 NC_008599.1 putative integral membrane protein 590164 4538002 CFF8240_0580 Campylobacter fetus subsp. fetus 82-40 putative integral membrane protein YP_891769.1 588992 R 360106 CDS YP_891770.1 118474173 4539100 complement(590187..591329) 1 NC_008599.1 identified by match to protein family HMM PF07690; putative transport protein 591329 4539100 CFF8240_0581 Campylobacter fetus subsp. fetus 82-40 putative transport protein YP_891770.1 590187 R 360106 CDS YP_891771.1 118474941 4538904 complement(591333..591776) 1 NC_008599.1 identified by match to protein family HMM PF00156; phosphoribosyltransferase 591776 4538904 CFF8240_0582 Campylobacter fetus subsp. fetus 82-40 phosphoribosyltransferase YP_891771.1 591333 R 360106 CDS YP_891772.1 118474417 4537801 complement(591786..593117) 1 NC_008599.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease family protein 593117 4537801 CFF8240_0583 Campylobacter fetus subsp. fetus 82-40 xanthine/uracil permease family protein YP_891772.1 591786 R 360106 CDS YP_891773.1 118475181 4539361 complement(593127..594209) 1 NC_008599.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; hypothetical protein 594209 4539361 CFF8240_0584 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891773.1 593127 R 360106 CDS YP_891774.1 118475543 4538149 594319..596838 1 NC_008599.1 identified by match to protein family HMM PF01966; GlnD family protein 596838 4538149 CFF8240_0585 Campylobacter fetus subsp. fetus 82-40 GlnD family protein YP_891774.1 594319 D 360106 CDS YP_891775.1 118474824 4538135 596849..598666 1 NC_008599.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 598666 glmS 4538135 glmS Campylobacter fetus subsp. fetus 82-40 glucosamine--fructose-6-phosphate aminotransferase YP_891775.1 596849 D 360106 CDS YP_891776.1 118475590 4539251 598804..600021 1 NC_008599.1 identified by match to protein family HMM PF04143; putative inner membrane protein 600021 4539251 CFF8240_0587 Campylobacter fetus subsp. fetus 82-40 putative inner membrane protein YP_891776.1 598804 D 360106 CDS YP_891777.1 118474210 4538527 600021..600257 1 NC_008599.1 identified by match to protein family HMM PF01206; hypothetical protein 600257 4538527 CFF8240_0588 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891777.1 600021 D 360106 CDS YP_891778.1 118475633 4538298 600264..600431 1 NC_008599.1 hypothetical protein 600431 4538298 CFF8240_0589 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891778.1 600264 D 360106 CDS YP_891779.1 118475058 4538802 complement(600434..601195) 1 NC_008599.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067; glutamate racemase 601195 murI 4538802 murI Campylobacter fetus subsp. fetus 82-40 glutamate racemase YP_891779.1 600434 R 360106 CDS YP_891780.1 118475428 4539341 complement(601199..603001) 1 NC_008599.1 identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; 3-polyprenyl-4hydroxybenzoate decarboxylase 603001 4539341 CFF8240_0591 Campylobacter fetus subsp. fetus 82-40 3-polyprenyl-4hydroxybenzoate decarboxylase YP_891780.1 601199 R 360106 CDS YP_891781.1 118474784 4539424 609772..610176 1 NC_008599.1 identified by match to protein family HMM PF00633; hypothetical protein 610176 4539424 CFF8240_0596 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891781.1 609772 D 360106 CDS YP_891782.1 118474590 4538703 611374..612531 1 NC_008599.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01814; match to protein family HMM TIGR00254; match to protein family HMM TIGR02481; diguanylate cyclase 612531 4538703 CFF8240_0606 Campylobacter fetus subsp. fetus 82-40 diguanylate cyclase YP_891782.1 611374 D 360106 CDS YP_891783.1 118475612 4539508 612568..615453 1 NC_008599.1 hypothetical protein 615453 4539508 CFF8240_0607 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891783.1 612568 D 360106 CDS YP_891784.1 118475325 4539391 complement(615482..616573) 1 NC_008599.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage-inducible domain-containing protein 616573 4539391 CFF8240_0608 Campylobacter fetus subsp. fetus 82-40 competence/damage-inducible domain-containing protein YP_891784.1 615482 R 360106 CDS YP_891785.1 118475435 4539348 complement(616590..617297) 1 NC_008599.1 hypothetical protein 617297 4539348 CFF8240_0609 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891785.1 616590 R 360106 CDS YP_891786.1 118474979 4537860 617323..620073 1 NC_008599.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 620073 ileS 4537860 ileS Campylobacter fetus subsp. fetus 82-40 isoleucyl-tRNA synthetase YP_891786.1 617323 D 360106 CDS YP_891787.1 118474307 4539005 620173..621534 1 NC_008599.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 621534 gatA 4539005 gatA Campylobacter fetus subsp. fetus 82-40 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_891787.1 620173 D 360106 CDS YP_891788.1 118475093 4538178 621539..622990 1 NC_008599.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 622990 guaB 4538178 guaB Campylobacter fetus subsp. fetus 82-40 inosine 5'-monophosphate dehydrogenase YP_891788.1 621539 D 360106 CDS YP_891789.1 118474380 4538925 622990..624096 1 NC_008599.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01392; homoserine O-acetyltransferase 624096 metX 4538925 metX Campylobacter fetus subsp. fetus 82-40 homoserine O-acetyltransferase YP_891789.1 622990 D 360106 CDS YP_891790.1 118475713 4538746 624087..624284 1 NC_008599.1 hypothetical protein 624284 4538746 CFF8240_0614 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891790.1 624087 D 360106 CDS YP_891791.1 118474909 4538931 624277..625083 1 NC_008599.1 carbon-nitrogen family hydrolase 625083 4538931 CFF8240_0615 Campylobacter fetus subsp. fetus 82-40 carbon-nitrogen family hydrolase YP_891791.1 624277 D 360106 CDS YP_891792.1 118475380 4538488 625085..626383 1 NC_008599.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 626383 murC 4538488 murC Campylobacter fetus subsp. fetus 82-40 UDP-N-acetylmuramate--L-alanine ligase YP_891792.1 625085 D 360106 CDS YP_891793.1 118474585 4538698 626380..626721 1 NC_008599.1 hypothetical protein 626721 4538698 CFF8240_0617 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891793.1 626380 D 360106 CDS YP_891794.1 118475694 4539011 626725..627741 1 NC_008599.1 identified by match to protein family HMM PF00724; NADPH dehydrogenase 627741 4539011 CFF8240_0619 Campylobacter fetus subsp. fetus 82-40 NADPH dehydrogenase YP_891794.1 626725 D 360106 CDS YP_891795.1 118474567 4538096 complement(627738..628433) 1 NC_008599.1 identified by match to protein family HMM PF00005; nitrate transport ATP-binding protein NrtD 628433 4538096 CFF8240_0618 Campylobacter fetus subsp. fetus 82-40 nitrate transport ATP-binding protein NrtD YP_891795.1 627738 R 360106 CDS YP_891796.1 118474363 4537929 complement(628465..629202) 1 NC_008599.1 identified by match to protein family HMM PF00528; taurine transport system permease TauC 629202 4537929 CFF8240_0620 Campylobacter fetus subsp. fetus 82-40 taurine transport system permease TauC YP_891796.1 628465 R 360106 CDS YP_891797.1 118475476 4538586 complement(629204..630121) 1 NC_008599.1 identified by match to protein family HMM PF03180; twin-arginine translocation pathway signal 630121 4538586 CFF8240_0621 Campylobacter fetus subsp. fetus 82-40 twin-arginine translocation pathway signal YP_891797.1 629204 R 360106 CDS YP_891798.1 118475411 4538209 complement(630118..631182) 1 NC_008599.1 acyl-CoA dehydrogenase 631182 4538209 CFF8240_0622 Campylobacter fetus subsp. fetus 82-40 acyl-CoA dehydrogenase YP_891798.1 630118 R 360106 CDS YP_891799.1 118474618 4538596 complement(631200..631730) 1 NC_008599.1 identified by match to protein family HMM PF02566; hypothetical protein 631730 4538596 CFF8240_0623 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891799.1 631200 R 360106 CDS YP_891800.1 118475577 4539238 631932..634133 1 NC_008599.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 634133 4539238 CFF8240_0624 Campylobacter fetus subsp. fetus 82-40 recombination and DNA strand exchange inhibitor protein YP_891800.1 631932 D 360106 CDS YP_891801.1 118474180 4537753 634200..636110 1 NC_008599.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; diguanylate cyclase/phosphodiesterase 636110 4537753 CFF8240_0625 Campylobacter fetus subsp. fetus 82-40 diguanylate cyclase/phosphodiesterase YP_891801.1 634200 D 360106 CDS YP_891802.1 118475322 4539388 636120..636722 1 NC_008599.1 identified by match to protein family HMM PF01810; amino acid transporter LysE 636722 4539388 CFF8240_0626 Campylobacter fetus subsp. fetus 82-40 amino acid transporter LysE YP_891802.1 636120 D 360106 CDS YP_891803.1 118474448 4539071 636725..637822 1 NC_008599.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 637822 dapE 4539071 dapE Campylobacter fetus subsp. fetus 82-40 succinyl-diaminopimelate desuccinylase YP_891803.1 636725 D 360106 CDS YP_891804.1 118475354 4538461 637904..639256 1 NC_008599.1 identified by match to protein family HMM PF01266; match to protein family HMM PF06039; malate:quinone oxidoreductase 639256 4538461 CFF8240_0628 Campylobacter fetus subsp. fetus 82-40 malate:quinone oxidoreductase YP_891804.1 637904 D 360106 CDS YP_891805.1 118474604 4538114 639240..639959 1 NC_008599.1 hypothetical protein 639959 4538114 CFF8240_0629 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891805.1 639240 D 360106 CDS YP_891806.1 118475613 4539509 640018..641466 1 NC_008599.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 641466 pyk 4539509 pyk Campylobacter fetus subsp. fetus 82-40 pyruvate kinase YP_891806.1 640018 D 360106 CDS YP_891807.1 118474963 4538000 641482..642705 1 NC_008599.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; processing protease 642705 4538000 CFF8240_0631 Campylobacter fetus subsp. fetus 82-40 processing protease YP_891807.1 641482 D 360106 CDS YP_891808.1 118474124 4538325 642695..644503 1 NC_008599.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 644503 4538325 CFF8240_0632 Campylobacter fetus subsp. fetus 82-40 ATP-dependent DNA helicase RecG YP_891808.1 642695 D 360106 CDS YP_891809.1 118474480 4537820 644762..646105 1 NC_008599.1 identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358; 3-deoxy-7-phosphoheptulonate synthase 646105 4537820 CFF8240_0633 Campylobacter fetus subsp. fetus 82-40 3-deoxy-7-phosphoheptulonate synthase YP_891809.1 644762 D 360106 CDS YP_891810.1 118475436 4539349 complement(646267..647490) 1 NC_008599.1 identified by match to protein family HMM TIGR00407; gamma-glutamyl phosphate reductase 647490 proA 4539349 proA Campylobacter fetus subsp. fetus 82-40 gamma-glutamyl phosphate reductase YP_891810.1 646267 R 360106 CDS YP_891811.1 118474851 4538300 647569..648522 1 NC_008599.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; oxidoreductase 648522 4538300 CFF8240_0635 Campylobacter fetus subsp. fetus 82-40 oxidoreductase YP_891811.1 647569 D 360106 CDS YP_891812.1 118475667 4538963 648532..650454 1 NC_008599.1 putative vesicular transport factor Uso1p 650454 4538963 CFF8240_0636 Campylobacter fetus subsp. fetus 82-40 putative vesicular transport factor Uso1p YP_891812.1 648532 D 360106 CDS YP_891813.1 118474171 4539098 650451..651146 1 NC_008599.1 identified by match to protein family HMM PF05175; methyltransferase small 651146 4539098 CFF8240_0637 Campylobacter fetus subsp. fetus 82-40 methyltransferase small YP_891813.1 650451 D 360106 CDS YP_891814.1 118475676 4538496 651140..651511 1 NC_008599.1 identified by match to protein family HMM PF03692; hypothetical protein 651511 4538496 CFF8240_0638 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891814.1 651140 D 360106 CDS YP_891815.1 118474437 4538982 651622..652782 1 NC_008599.1 hypothetical protein 652782 4538982 CFF8240_0639 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891815.1 651622 D 360106 CDS YP_891816.1 118475059 4538803 652779..653555 1 NC_008599.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 653555 trpC 4538803 trpC Campylobacter fetus subsp. fetus 82-40 indole-3-glycerol-phosphate synthase YP_891816.1 652779 D 360106 CDS YP_891817.1 118474462 4537944 653555..654061 1 NC_008599.1 identified by match to protein family HMM PF01230; Hit family protein 654061 4537944 CFF8240_0641 Campylobacter fetus subsp. fetus 82-40 Hit family protein YP_891817.1 653555 D 360106 CDS YP_891818.1 118475086 4538171 654058..654795 1 NC_008599.1 identified by match to protein family HMM PF03883; hypothetical protein 654795 4538171 CFF8240_0642 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891818.1 654058 D 360106 CDS YP_891819.1 118475469 4538579 656773..657564 1 NC_008599.1 hypothetical protein 657564 4538579 CFF8240_0644 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891819.1 656773 D 360106 CDS YP_891820.1 118474876 4538635 657522..657854 1 NC_008599.1 hypothetical protein 657854 4538635 CFF8240_0645 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891820.1 657522 D 360106 CDS YP_891821.1 118474412 4537796 657895..658101 1 NC_008599.1 hypothetical protein 658101 4537796 CFF8240_0646 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891821.1 657895 D 360106 CDS YP_891822.1 118475523 4538226 658082..658315 1 NC_008599.1 carbamoyl-phosphate synthase large subunit 658315 4538226 CFF8240_0647 Campylobacter fetus subsp. fetus 82-40 carbamoyl-phosphate synthase large subunit YP_891822.1 658082 D 360106 CDS YP_891823.1 118474182 4537755 complement(658413..658826) 1 NC_008599.1 hypothetical protein 658826 4537755 CFF8240_0648 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891823.1 658413 R 360106 CDS YP_891824.1 118475162 4537775 complement(658823..660394) 1 NC_008599.1 identified by match to protein family HMM PF03237; hypothetical protein 660394 4537775 CFF8240_0649 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891824.1 658823 R 360106 CDS YP_891825.1 118474711 4539267 complement(660498..661559) 1 NC_008599.1 identified by match to protein family HMM PF04860; phage portal protein 661559 4539267 CFF8240_0650 Campylobacter fetus subsp. fetus 82-40 phage portal protein YP_891825.1 660498 R 360106 CDS YP_891826.1 118475716 4538749 661691..662428 1 NC_008599.1 hypothetical protein 662428 4538749 CFF8240_0651 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891826.1 661691 D 360106 CDS YP_891827.1 118474564 4538093 662428..663363 1 NC_008599.1 hypothetical protein 663363 4538093 CFF8240_0652 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891827.1 662428 D 360106 CDS YP_891828.1 118474093 4537906 663353..663652 1 NC_008599.1 hypothetical protein 663652 4537906 CFF8240_0653 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891828.1 663353 D 360106 CDS YP_891829.1 118474842 4538716 663872..664003 1 NC_008599.1 hypothetical protein 664003 4538716 CFF8240_0654 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891829.1 663872 D 360106 CDS YP_891830.1 118475661 4538957 663996..664694 1 NC_008599.1 hypothetical protein 664694 4538957 CFF8240_0655 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891830.1 663996 D 360106 CDS YP_891831.1 118474679 4539563 664684..665148 1 NC_008599.1 hypothetical protein 665148 4539563 CFF8240_0656 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891831.1 664684 D 360106 CDS YP_891832.1 118474178 4537751 665178..665393 1 NC_008599.1 hypothetical protein 665393 4537751 CFF8240_0658 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891832.1 665178 D 360106 CDS YP_891833.1 118474401 4539157 complement(665390..665563) 1 NC_008599.1 hypothetical protein 665563 4539157 CFF8240_0657 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891833.1 665390 R 360106 CDS YP_891834.1 118474983 4537864 665850..666566 1 NC_008599.1 identified by match to protein family HMM TIGR01877; CRISPR-associated protein Cas6 666566 cas 4537864 cas Campylobacter fetus subsp. fetus 82-40 CRISPR-associated protein Cas6 YP_891834.1 665850 D 360106 CDS YP_891835.1 118474880 4538639 666834..668246 1 NC_008599.1 hypothetical protein 668246 4538639 CFF8240_0660 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891835.1 666834 D 360106 CDS YP_891836.1 118475662 4538958 668230..669183 1 NC_008599.1 hypothetical protein 669183 4538958 CFF8240_0661 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891836.1 668230 D 360106 CDS YP_891837.1 118475648 4538681 669180..669941 1 NC_008599.1 identified by match to protein family HMM TIGR02592; match to protein family HMM TIGR02593; CRISPR-associated protein Cas5, hmari subtype 669941 cas5h 4538681 cas5h Campylobacter fetus subsp. fetus 82-40 CRISPR-associated protein Cas5, hmari subtype YP_891837.1 669180 D 360106 CDS YP_891838.1 118475374 4538482 670094..672310 1 NC_008599.1 identified by match to protein family HMM PF00271; match to protein family HMM TIGR01587; CRISPR-associated helicase Cas3 domain-containing protein 672310 cas 4538482 cas Campylobacter fetus subsp. fetus 82-40 CRISPR-associated helicase Cas3 domain-containing protein YP_891838.1 670094 D 360106 CDS YP_891839.1 118474556 4538085 672307..672792 1 NC_008599.1 identified by match to protein family HMM PF01930; CRISPR-associated protein Cas4 672792 4538085 CFF8240_0664 Campylobacter fetus subsp. fetus 82-40 CRISPR-associated protein Cas4 YP_891839.1 672307 D 360106 CDS YP_891840.1 118475338 4538619 672834..673802 1 NC_008599.1 identified by match to protein family HMM PF01867; match to protein family HMM TIGR00287; CRISPR-associated protein Cas1 673802 cas 4538619 cas Campylobacter fetus subsp. fetus 82-40 CRISPR-associated protein Cas1 YP_891840.1 672834 D 360106 CDS YP_891841.1 118475314 4539380 673799..674098 1 NC_008599.1 identified by match to protein family HMM TIGR01573; CRISPR-associated protein Cas2 674098 cas 4539380 cas Campylobacter fetus subsp. fetus 82-40 CRISPR-associated protein Cas2 YP_891841.1 673799 D 360106 CDS YP_891842.1 118474352 4537918 674648..674779 1 NC_008599.1 hypothetical protein 674779 4537918 CFF8240_0667 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891842.1 674648 D 360106 CDS YP_891843.1 118474915 4538937 675359..675487 1 NC_008599.1 hypothetical protein 675487 4538937 CFF8240_0668 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891843.1 675359 D 360106 CDS YP_891844.1 118475763 4538197 676320..676790 1 NC_008599.1 hypothetical protein 676790 4538197 CFF8240_0669 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891844.1 676320 D 360106 CDS YP_891845.1 118475770 4539032 complement(676925..677416) 1 NC_008599.1 DNA adenine methylase 677416 4539032 CFF8240_0670 Campylobacter fetus subsp. fetus 82-40 DNA adenine methylase YP_891845.1 676925 R 360106 CDS YP_891846.1 118474781 4539421 677608..678390 1 NC_008599.1 hypothetical protein 678390 4539421 CFF8240_0671 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891846.1 677608 D 360106 CDS YP_891847.1 118475125 4539324 678366..678662 1 NC_008599.1 hypothetical protein 678662 4539324 CFF8240_0672 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891847.1 678366 D 360106 CDS YP_891848.1 118474672 4539555 678703..678909 1 NC_008599.1 hypothetical protein 678909 4539555 CFF8240_0673 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891848.1 678703 D 360106 CDS YP_891849.1 118474871 4538630 complement(679070..679318) 1 NC_008599.1 hypothetical protein 679318 4538630 CFF8240_0674 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891849.1 679070 R 360106 CDS YP_891850.1 118475775 4539037 complement(679469..679642) 1 NC_008599.1 hypothetical protein 679642 4539037 CFF8240_0675 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891850.1 679469 R 360106 CDS YP_891851.1 118475185 4539365 680200..681645 1 NC_008599.1 biotin carboxylase; catalyses the carboxylation of the carrier protein which then transfers the carboxyl group to form malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase subunit A 681645 4539365 CFF8240_0676 Campylobacter fetus subsp. fetus 82-40 acetyl-CoA carboxylase subunit A YP_891851.1 680200 D 360106 CDS YP_891852.1 118474183 4537756 681652..681888 1 NC_008599.1 hypothetical protein 681888 4537756 CFF8240_0677 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891852.1 681652 D 360106 CDS YP_891853.1 118474506 4539285 681875..682591 1 NC_008599.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 682591 4539285 CFF8240_0678 Campylobacter fetus subsp. fetus 82-40 arginyl-tRNA-protein transferase YP_891853.1 681875 D 360106 CDS YP_891854.1 118475188 4539368 682648..683472 1 NC_008599.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 683472 4539368 CFF8240_0679 Campylobacter fetus subsp. fetus 82-40 adenylosuccinate lyase YP_891854.1 682648 D 360106 CDS YP_891855.1 118474724 4538537 683517..684290 1 NC_008599.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 684290 pdxJ 4538537 pdxJ Campylobacter fetus subsp. fetus 82-40 pyridoxine 5'-phosphate synthase YP_891855.1 683517 D 360106 CDS YP_891856.1 118475415 4538213 684287..685210 1 NC_008599.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 685210 pdxA 4538213 pdxA Campylobacter fetus subsp. fetus 82-40 4-hydroxythreonine-4-phosphate dehydrogenase YP_891856.1 684287 D 360106 CDS YP_891857.1 118475625 4538290 685276..686826 1 NC_008599.1 identified by match to protein family HMM PF01384; phosphate transporter family protein 686826 4538290 CFF8240_0682 Campylobacter fetus subsp. fetus 82-40 phosphate transporter family protein YP_891857.1 685276 D 360106 CDS YP_891858.1 118475640 4538673 686898..689741 1 NC_008599.1 identified by match to protein family HMM PF00669; flagellar hook-associated protein 689741 4538673 CFF8240_0683 Campylobacter fetus subsp. fetus 82-40 flagellar hook-associated protein YP_891858.1 686898 D 360106 CDS YP_891859.1 118474833 4538707 689803..691950 1 NC_008599.1 identified by match to protein family HMM PF01580; DNA translocase FtsK 691950 4538707 CFF8240_0684 Campylobacter fetus subsp. fetus 82-40 DNA translocase FtsK YP_891859.1 689803 D 360106 CDS YP_891860.1 118474890 4539045 692017..692280 1 NC_008599.1 hypothetical protein 692280 4539045 CFF8240_0685 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891860.1 692017 D 360106 CDS YP_891861.1 118474159 4539086 692273..692698 1 NC_008599.1 hypothetical protein 692698 4539086 CFF8240_0686 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891861.1 692273 D 360106 CDS YP_891862.1 118475154 4539216 692699..693583 1 NC_008599.1 identified by match to protein family HMM PF00348; polyprenyl synthetase 693583 4539216 CFF8240_0687 Campylobacter fetus subsp. fetus 82-40 polyprenyl synthetase YP_891862.1 692699 D 360106 CDS YP_891863.1 118474397 4539153 693583..694851 1 NC_008599.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 694851 hemA 4539153 hemA Campylobacter fetus subsp. fetus 82-40 glutamyl-tRNA reductase YP_891863.1 693583 D 360106 CDS YP_891864.1 118474251 4537884 694848..696551 1 NC_008599.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 696551 proS 4537884 proS Campylobacter fetus subsp. fetus 82-40 prolyl-tRNA synthetase YP_891864.1 694848 D 360106 CDS YP_891865.1 118475002 4539528 696548..696940 1 NC_008599.1 hypothetical protein 696940 4539528 CFF8240_0690 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891865.1 696548 D 360106 CDS YP_891866.1 118474504 4539283 696953..697864 1 NC_008599.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 697864 hemC 4539283 hemC Campylobacter fetus subsp. fetus 82-40 porphobilinogen deaminase YP_891866.1 696953 D 360106 CDS YP_891867.1 118475249 4538413 complement(697870..698670) 1 NC_008599.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; ribonuclease BN 698670 4538413 CFF8240_0692 Campylobacter fetus subsp. fetus 82-40 ribonuclease BN YP_891867.1 697870 R 360106 CDS YP_891868.1 118474967 4537848 complement(698680..700059) 1 NC_008599.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD 700059 4537848 CFF8240_0693 Campylobacter fetus subsp. fetus 82-40 glycolate oxidase subunit GlcD YP_891868.1 698680 R 360106 CDS YP_891869.1 118475574 4538453 complement(700061..700777) 1 NC_008599.1 hypothetical protein 700777 4538453 CFF8240_0694 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891869.1 700061 R 360106 CDS YP_891870.1 118475583 4539244 700946..701077 1 NC_008599.1 hypothetical protein 701077 4539244 CFF8240_0695 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891870.1 700946 D 360106 CDS YP_891871.1 118475048 4538792 701525..702691 1 NC_008599.1 identified by match to protein family HMM PF01551; M24/M37 family peptidase 702691 4538792 CFF8240_0696 Campylobacter fetus subsp. fetus 82-40 M24/M37 family peptidase YP_891871.1 701525 D 360106 CDS YP_891872.1 118475416 4538214 702700..704061 1 NC_008599.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 704061 mgtE 4538214 mgtE Campylobacter fetus subsp. fetus 82-40 magnesium transporter YP_891872.1 702700 D 360106 CDS YP_891873.1 118475103 4539439 704046..704630 1 NC_008599.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; NUDIX domain-containing protein 704630 4539439 CFF8240_0698 Campylobacter fetus subsp. fetus 82-40 NUDIX domain-containing protein YP_891873.1 704046 D 360106 CDS YP_891874.1 118474350 4537916 complement(704638..707187) 1 NC_008599.1 hypothetical protein 707187 4537916 CFF8240_0699 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891874.1 704638 R 360106 CDS YP_891875.1 118475328 4539394 707404..707667 1 NC_008599.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 707667 groES 4539394 groES Campylobacter fetus subsp. fetus 82-40 co-chaperonin GroES YP_891875.1 707404 D 360106 CDS YP_891876.1 118474493 4537833 707685..709322 1 NC_008599.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 709322 groEL 4537833 groEL Campylobacter fetus subsp. fetus 82-40 chaperonin GroEL YP_891876.1 707685 D 360106 CDS YP_891877.1 118475089 4538174 709480..710424 1 NC_008599.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 710424 hemH 4538174 hemH Campylobacter fetus subsp. fetus 82-40 ferrochelatase YP_891877.1 709480 D 360106 CDS YP_891878.1 118475499 4539472 complement(710416..712236) 1 NC_008599.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 712236 4539472 CFF8240_0702 Campylobacter fetus subsp. fetus 82-40 penicillin-binding protein YP_891878.1 710416 R 360106 CDS YP_891879.1 118474123 4538324 complement(712236..712523) 1 NC_008599.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 712523 fliE 4538324 fliE Campylobacter fetus subsp. fetus 82-40 flagellar hook-basal body protein FliE YP_891879.1 712236 R 360106 CDS YP_891880.1 118474843 4538717 complement(712527..713021) 1 NC_008599.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 713021 flgC 4538717 flgC Campylobacter fetus subsp. fetus 82-40 flagellar basal body rod protein FlgC YP_891880.1 712527 R 360106 CDS YP_891881.1 118475637 4538670 complement(713031..713471) 1 NC_008599.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 713471 flgB 4538670 flgB Campylobacter fetus subsp. fetus 82-40 flagellar basal body rod protein FlgB YP_891881.1 713031 R 360106 CDS YP_891882.1 118474228 4538273 complement(713517..714179) 1 NC_008599.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 714179 aat 4538273 aat Campylobacter fetus subsp. fetus 82-40 leucyl/phenylalanyl-tRNA--protein transferase YP_891882.1 713517 R 360106 CDS YP_891883.1 118475645 4538678 complement(714176..715030) 1 NC_008599.1 hypothetical protein 715030 4538678 CFF8240_0708 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891883.1 714176 R 360106 CDS YP_891884.1 118475524 4538227 complement(715027..717225) 1 NC_008599.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; ATP-dependent Clp protease ATP-binding subunit ClpA 717225 4538227 CFF8240_0709 Campylobacter fetus subsp. fetus 82-40 ATP-dependent Clp protease ATP-binding subunit ClpA YP_891884.1 715027 R 360106 CDS YP_891885.1 118475182 4539362 complement(717225..717524) 1 NC_008599.1 identified by match to protein family HMM PF02617; ATP-dependent Clp protease adaptor protein ClpS 717524 clpS 4539362 clpS Campylobacter fetus subsp. fetus 82-40 ATP-dependent Clp protease adaptor protein ClpS YP_891885.1 717225 R 360106 CDS YP_891886.1 118475764 4538198 complement(717514..718110) 1 NC_008599.1 thioredoxin domain-containing protein 718110 4538198 CFF8240_0711 Campylobacter fetus subsp. fetus 82-40 thioredoxin domain-containing protein YP_891886.1 717514 R 360106 CDS YP_891887.1 118474780 4539419 complement(718128..718583) 1 NC_008599.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 718583 smpB 4539419 smpB Campylobacter fetus subsp. fetus 82-40 SsrA-binding protein YP_891887.1 718128 R 360106 CDS YP_891888.1 118474681 4539566 complement(718796..719536) 1 NC_008599.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 719536 4539566 CFF8240_0713 Campylobacter fetus subsp. fetus 82-40 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_891888.1 718796 R 360106 CDS YP_891889.1 118475471 4538581 complement(719533..719760) 1 NC_008599.1 identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator 719760 csrA 4538581 csrA Campylobacter fetus subsp. fetus 82-40 carbon storage regulator YP_891889.1 719533 R 360106 CDS YP_891890.1 118474138 4538024 complement(719744..720580) 1 NC_008599.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 720580 truB 4538024 truB Campylobacter fetus subsp. fetus 82-40 tRNA pseudouridine synthase B YP_891890.1 719744 R 360106 CDS YP_891891.1 118475254 4539104 complement(720577..722634) 1 NC_008599.1 identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA 722634 4539104 CFF8240_0716 Campylobacter fetus subsp. fetus 82-40 ATP-dependent DNA helicase PcrA YP_891891.1 720577 R 360106 CDS YP_891892.1 118475506 4539479 722868..723740 1 NC_008599.1 identified by match to protein family HMM PF00126; transcriptional regulator 723740 4539479 CFF8240_0718 Campylobacter fetus subsp. fetus 82-40 transcriptional regulator YP_891892.1 722868 D 360106 CDS YP_891893.1 118474279 4539460 complement(723730..724173) 1 NC_008599.1 hypothetical protein 724173 4539460 CFF8240_0717 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891893.1 723730 R 360106 CDS YP_891894.1 118474498 4539277 complement(724183..725892) 1 NC_008599.1 identified by match to protein family HMM PF01432; oligoendopeptidase F 725892 4539277 CFF8240_0719 Campylobacter fetus subsp. fetus 82-40 oligoendopeptidase F YP_891894.1 724183 R 360106 CDS YP_891895.1 118474409 4537793 complement(725982..727211) 1 NC_008599.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 727211 4537793 CFF8240_0720 Campylobacter fetus subsp. fetus 82-40 serine/threonine transporter SstT YP_891895.1 725982 R 360106 CDS YP_891896.1 118474936 4538899 727371..728567 1 NC_008599.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 728567 metK 4538899 metK Campylobacter fetus subsp. fetus 82-40 S-adenosylmethionine synthetase YP_891896.1 727371 D 360106 CDS YP_891897.1 118474215 4538260 728839..729711 1 NC_008599.1 identified by match to protein family HMM PF01297; protein AfeA 729711 4538260 CFF8240_0722 Campylobacter fetus subsp. fetus 82-40 protein AfeA YP_891897.1 728839 D 360106 CDS YP_891898.1 118474063 4538726 729698..730540 1 NC_008599.1 identified by match to protein family HMM PF00005; protein AfeB 730540 4538726 CFF8240_0723 Campylobacter fetus subsp. fetus 82-40 protein AfeB YP_891898.1 729698 D 360106 CDS YP_891899.1 118475222 4539168 730515..731339 1 NC_008599.1 identified by match to protein family HMM PF00950; protein AfeC 731339 4539168 CFF8240_0724 Campylobacter fetus subsp. fetus 82-40 protein AfeC YP_891899.1 730515 D 360106 CDS YP_891900.1 118475064 4538808 731320..732135 1 NC_008599.1 identified by match to protein family HMM PF00950; protein AfeD 732135 4538808 CFF8240_0726 Campylobacter fetus subsp. fetus 82-40 protein AfeD YP_891900.1 731320 D 360106 CDS YP_891901.1 118474873 4538632 complement(732122..733357) 1 NC_008599.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 733357 lnt 4538632 lnt Campylobacter fetus subsp. fetus 82-40 apolipoprotein N-acyltransferase YP_891901.1 732122 R 360106 CDS YP_891902.1 118474680 4539565 733360..733641 1 NC_008599.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 733641 yajC 4539565 yajC Campylobacter fetus subsp. fetus 82-40 preprotein translocase subunit YajC YP_891902.1 733360 D 360106 CDS YP_891903.1 118475690 4538511 733634..735223 1 NC_008599.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 735223 secD 4538511 secD Campylobacter fetus subsp. fetus 82-40 preprotein translocase subunit SecD YP_891903.1 733634 D 360106 CDS YP_891904.1 118474881 4538640 735223..736194 1 NC_008599.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 736194 secF 4538640 secF Campylobacter fetus subsp. fetus 82-40 preprotein translocase subunit SecF YP_891904.1 735223 D 360106 CDS YP_891905.1 118475631 4538296 736204..736542 1 NC_008599.1 hypothetical protein 736542 4538296 CFF8240_0730 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891905.1 736204 D 360106 CDS YP_891906.1 118475143 4539205 736551..738986 1 NC_008599.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 738986 leuS 4539205 leuS Campylobacter fetus subsp. fetus 82-40 leucyl-tRNA synthetase YP_891906.1 736551 D 360106 CDS YP_891907.1 118475467 4538577 738988..739527 1 NC_008599.1 hypothetical protein 739527 4538577 CFF8240_0732 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891907.1 738988 D 360106 CDS YP_891908.1 118475090 4538175 739508..741052 1 NC_008599.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 741052 4538175 CFF8240_0733 Campylobacter fetus subsp. fetus 82-40 diguanylate cyclase YP_891908.1 739508 D 360106 CDS YP_891909.1 118474149 4538036 741052..742221 1 NC_008599.1 identified by match to protein family HMM TIGR01499; folylpolyglutamate synthase 742221 folC 4538036 folC Campylobacter fetus subsp. fetus 82-40 folylpolyglutamate synthase YP_891909.1 741052 D 360106 CDS YP_891910.1 118474810 4539197 742211..743101 1 NC_008599.1 identified by match to protein family HMM PF01551; M24/M37 family peptidase 743101 4539197 CFF8240_0735 Campylobacter fetus subsp. fetus 82-40 M24/M37 family peptidase YP_891910.1 742211 D 360106 CDS YP_891911.1 118475360 4538467 743050..743463 1 NC_008599.1 identified by match to protein family HMM PF04519; hypothetical protein 743463 4538467 CFF8240_0736 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891911.1 743050 D 360106 CDS YP_891912.1 118474341 4538564 743444..746401 1 NC_008599.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 746401 mfd 4538564 mfd Campylobacter fetus subsp. fetus 82-40 transcription-repair coupling factor YP_891912.1 743444 D 360106 CDS YP_891913.1 118475296 4539535 746398..747003 1 NC_008599.1 hypothetical protein 747003 4539535 CFF8240_0738 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891913.1 746398 D 360106 CDS YP_891914.1 118474420 4537804 747025..747771 1 NC_008599.1 hypothetical protein 747771 4537804 CFF8240_0739 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891914.1 747025 D 360106 CDS YP_891915.1 118475080 4538165 747761..748426 1 NC_008599.1 identified by match to protein family HMM PF00730; endonuclease III 748426 4538165 CFF8240_0740 Campylobacter fetus subsp. fetus 82-40 endonuclease III YP_891915.1 747761 D 360106 CDS YP_891916.1 118475673 4538969 748482..748883 1 NC_008599.1 identified by match to protein family HMM PF04076; protein YgiW 748883 4538969 CFF8240_0741 Campylobacter fetus subsp. fetus 82-40 protein YgiW YP_891916.1 748482 D 360106 CDS YP_891917.1 118474854 4538303 748953..749432 1 NC_008599.1 identified by match to protein family HMM PF02629; CoA-binding domain-containing protein 749432 4538303 CFF8240_0742 Campylobacter fetus subsp. fetus 82-40 CoA-binding domain-containing protein YP_891917.1 748953 D 360106 CDS YP_891918.1 118474294 4538992 749416..750627 1 NC_008599.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 750627 ilvA 4538992 ilvA Campylobacter fetus subsp. fetus 82-40 threonine dehydratase YP_891918.1 749416 D 360106 CDS YP_891919.1 118475519 4538222 750879..756116 1 NC_008599.1 identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901; hemagglutination activity domain-containing protein 756116 4538222 CFF8240_0744 Campylobacter fetus subsp. fetus 82-40 hemagglutination activity domain-containing protein YP_891919.1 750879 D 360106 CDS YP_891920.1 118474815 4538126 756117..757760 1 NC_008599.1 identified by match to protein family HMM PF03865; hemolysin secretion/activation protein ShlB/FhaC/HecB 757760 4538126 CFF8240_0745 Campylobacter fetus subsp. fetus 82-40 hemolysin secretion/activation protein ShlB/FhaC/HecB YP_891920.1 756117 D 360106 CDS YP_891921.1 118475396 4538872 complement(757786..757911) 1 NC_008599.1 hypothetical protein 757911 4538872 CFF8240_0746 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891921.1 757786 R 360106 CDS YP_891922.1 118474657 4539405 complement(757908..758684) 1 NC_008599.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 758684 truA 4539405 truA Campylobacter fetus subsp. fetus 82-40 tRNA pseudouridine synthase A YP_891922.1 757908 R 360106 CDS YP_891923.1 118474326 4538858 complement(758681..759706) 1 NC_008599.1 identified by match to protein family HMM PF03739; YjgP/YjgQ permease 759706 4538858 CFF8240_0748 Campylobacter fetus subsp. fetus 82-40 YjgP/YjgQ permease YP_891923.1 758681 R 360106 CDS YP_891924.1 118474937 4538900 complement(759706..760506) 1 NC_008599.1 identified by match to protein family HMM PF06750; type IV pilus prepilin peptidase PilD 760506 pilD 4538900 pilD Campylobacter fetus subsp. fetus 82-40 type IV pilus prepilin peptidase PilD YP_891924.1 759706 R 360106 CDS YP_891925.1 118474388 4539144 complement(760506..761183) 1 NC_008599.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase 761183 uppS 4539144 uppS Campylobacter fetus subsp. fetus 82-40 undecaprenyl diphosphate synthase YP_891925.1 760506 R 360106 CDS YP_891926.1 118475130 4539329 complement(761186..761863) 1 NC_008599.1 hypothetical protein 761863 4539329 CFF8240_0751 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891926.1 761186 R 360106 CDS YP_891927.1 118474628 4538608 complement(761860..763023) 1 NC_008599.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 763023 coaBC 4538608 coaBC Campylobacter fetus subsp. fetus 82-40 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_891927.1 761860 R 360106 CDS YP_891928.1 118474348 4537914 complement(763013..764323) 1 NC_008599.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 764323 glmU 4537914 glmU Campylobacter fetus subsp. fetus 82-40 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_891928.1 763013 R 360106 CDS YP_891929.1 118474799 4539186 764530..765264 1 NC_008599.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 765264 fliP 4539186 fliP Campylobacter fetus subsp. fetus 82-40 flagellar biosynthesis protein FliP YP_891929.1 764530 D 360106 CDS YP_891930.1 118475301 4539541 complement(765257..766111) 1 NC_008599.1 hypothetical protein 766111 4539541 CFF8240_0754 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891930.1 765257 R 360106 CDS YP_891931.1 118475364 4538471 complement(766135..767040) 1 NC_008599.1 identified by match to protein family HMM PF03547; putative integral membrane protein 767040 4538471 CFF8240_0756 Campylobacter fetus subsp. fetus 82-40 putative integral membrane protein YP_891931.1 766135 R 360106 CDS YP_891932.1 118474791 4539432 complement(767239..768252) 1 NC_008599.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 768252 nadA 4539432 nadA Campylobacter fetus subsp. fetus 82-40 quinolinate synthetase YP_891932.1 767239 R 360106 CDS YP_891933.1 118475587 4539248 768761..769945 1 NC_008599.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; macrolide-specific efflux protein MacA 769945 4539248 CFF8240_0758 Campylobacter fetus subsp. fetus 82-40 macrolide-specific efflux protein MacA YP_891933.1 768761 D 360106 CDS YP_891934.1 118475255 4539105 769942..771867 1 NC_008599.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02687; macrolide-specific ABC-type efflux carrier 771867 4539105 CFF8240_0759 Campylobacter fetus subsp. fetus 82-40 macrolide-specific ABC-type efflux carrier YP_891934.1 769942 D 360106 CDS YP_891935.1 118474082 4537895 771870..773168 1 NC_008599.1 identified by match to protein family HMM PF02321; outer membrane efflux protein 773168 4537895 CFF8240_0760 Campylobacter fetus subsp. fetus 82-40 outer membrane efflux protein YP_891935.1 771870 D 360106 CDS YP_891936.1 118475486 4538365 773169..774428 1 NC_008599.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; ComEC/Rec2 family protein 774428 4538365 CFF8240_0761 Campylobacter fetus subsp. fetus 82-40 ComEC/Rec2 family protein YP_891936.1 773169 D 360106 CDS YP_891937.1 118474309 4539007 complement(774435..775667) 1 NC_008599.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; sensor histidine kinase 775667 4539007 CFF8240_0762 Campylobacter fetus subsp. fetus 82-40 sensor histidine kinase YP_891937.1 774435 R 360106 CDS YP_891938.1 118474546 4538075 complement(775664..776338) 1 NC_008599.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 776338 4538075 CFF8240_0763 Campylobacter fetus subsp. fetus 82-40 DNA-binding response regulator YP_891938.1 775664 R 360106 CDS YP_891939.1 118475548 4538154 complement(776425..777840) 1 NC_008599.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; peptidase S1C, Do 777840 4538154 CFF8240_0764 Campylobacter fetus subsp. fetus 82-40 peptidase S1C, Do YP_891939.1 776425 R 360106 CDS YP_891940.1 118474510 4539289 778050..778922 1 NC_008599.1 identified by match to protein family HMM PF00226; match to protein family HMM PF01556; co-chaperone protein DnaJ 778922 4539289 CFF8240_0765 Campylobacter fetus subsp. fetus 82-40 co-chaperone protein DnaJ YP_891940.1 778050 D 360106 CDS YP_891941.1 118474475 4537957 778934..779305 1 NC_008599.1 identified by match to protein family HMM PF00376; putative heat shock protein HspR 779305 4537957 CFF8240_0766 Campylobacter fetus subsp. fetus 82-40 putative heat shock protein HspR YP_891941.1 778934 D 360106 CDS YP_891942.1 118474802 4539189 779311..780930 1 NC_008599.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02254; sodium/hydrogen exchanger family protein 780930 4539189 CFF8240_0767 Campylobacter fetus subsp. fetus 82-40 sodium/hydrogen exchanger family protein YP_891942.1 779311 D 360106 CDS YP_891943.1 118475556 4538162 780943..782379 1 NC_008599.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 782379 4538162 CFF8240_0768 Campylobacter fetus subsp. fetus 82-40 potassium/proton antiporter YP_891943.1 780943 D 360106 CDS YP_891944.1 118475776 4539038 782439..783011 1 NC_008599.1 hypothetical protein 783011 4539038 CFF8240_0769 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891944.1 782439 D 360106 CDS YP_891945.1 118474096 4537909 783084..783857 1 NC_008599.1 identified by match to protein family HMM PF01925; inner membrane protein YfcA 783857 4537909 CFF8240_0770 Campylobacter fetus subsp. fetus 82-40 inner membrane protein YfcA YP_891945.1 783084 D 360106 CDS YP_891946.1 118475487 4538366 783911..784591 1 NC_008599.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 784591 atpB 4538366 atpB Campylobacter fetus subsp. fetus 82-40 F0F1 ATP synthase subunit A YP_891946.1 783911 D 360106 CDS YP_891947.1 118474699 4538394 784596..784814 1 NC_008599.1 hypothetical protein 784814 4538394 CFF8240_0772 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891947.1 784596 D 360106 CDS YP_891948.1 118474768 4538835 784786..785322 1 NC_008599.1 identified by match to protein family HMM PF02581; thiamine monophosphate synthase 785322 4538835 CFF8240_0773 Campylobacter fetus subsp. fetus 82-40 thiamine monophosphate synthase YP_891948.1 784786 D 360106 CDS YP_891949.1 118475539 4538145 785380..786798 1 NC_008599.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 786798 gatB 4538145 gatB Campylobacter fetus subsp. fetus 82-40 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_891949.1 785380 D 360106 CDS YP_891950.1 118474527 4538015 786810..787700 1 NC_008599.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 787700 gpsA 4538015 gpsA Campylobacter fetus subsp. fetus 82-40 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_891950.1 786810 D 360106 CDS YP_891951.1 118474059 4537982 787697..788761 1 NC_008599.1 identified by match to protein family HMM PF00933; glycosyl hydrolase family protein 788761 4537982 CFF8240_0777 Campylobacter fetus subsp. fetus 82-40 glycosyl hydrolase family protein YP_891951.1 787697 D 360106 CDS YP_891952.1 118474407 4537791 complement(788756..789190) 1 NC_008599.1 hypothetical protein 789190 4537791 CFF8240_0776 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891952.1 788756 R 360106 CDS YP_891953.1 118475678 4538498 complement(789183..790055) 1 NC_008599.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein 790055 rarD 4538498 rarD Campylobacter fetus subsp. fetus 82-40 RarD protein YP_891953.1 789183 R 360106 CDS YP_891954.1 118474514 4539293 complement(790067..790813) 1 NC_008599.1 identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein 790813 4539293 CFF8240_0779 Campylobacter fetus subsp. fetus 82-40 amino acid ABC transporter ATP-binding protein YP_891954.1 790067 R 360106 CDS YP_891955.1 118475743 4538352 complement(790822..791454) 1 NC_008599.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino-acid ABC transporter permease YckJ 791454 4538352 CFF8240_0780 Campylobacter fetus subsp. fetus 82-40 amino-acid ABC transporter permease YckJ YP_891955.1 790822 R 360106 CDS YP_891956.1 118475448 4539224 complement(791477..792235) 1 NC_008599.1 identified by match to protein family HMM PF00497; amino-acid ABC transporter extracellular-binding protein yckK 792235 4539224 CFF8240_0781 Campylobacter fetus subsp. fetus 82-40 amino-acid ABC transporter extracellular-binding protein yckK YP_891956.1 791477 R 360106 CDS YP_891957.1 118474650 4539398 complement(792364..792909) 1 NC_008599.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 792909 pgsA 4539398 pgsA Campylobacter fetus subsp. fetus 82-40 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_891957.1 792364 R 360106 CDS YP_891958.1 118475692 4539009 complement(792906..793694) 1 NC_008599.1 Acts on the hydroxyl group at position 7 of the steroid frame; 7-alpha-hydroxysteroid dehydrogenase 793694 4539009 CFF8240_0783 Campylobacter fetus subsp. fetus 82-40 7-alpha-hydroxysteroid dehydrogenase YP_891958.1 792906 R 360106 CDS YP_891959.1 118474917 4538939 complement(793694..794587) 1 NC_008599.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 794587 dapA 4538939 dapA Campylobacter fetus subsp. fetus 82-40 dihydrodipicolinate synthase YP_891959.1 793694 R 360106 CDS YP_891960.1 118474974 4537855 complement(794584..795831) 1 NC_008599.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 795831 4537855 CFF8240_0785 Campylobacter fetus subsp. fetus 82-40 M16 family peptidase YP_891960.1 794584 R 360106 CDS YP_891961.1 118474237 4537870 complement(795832..796890) 1 NC_008599.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 796890 pyrD 4537870 pyrD Campylobacter fetus subsp. fetus 82-40 dihydroorotate dehydrogenase 2 YP_891961.1 795832 R 360106 CDS YP_891962.1 118475187 4539367 complement(796942..798660) 1 NC_008599.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; lipid export ABC transport protein 798660 4539367 CFF8240_0787 Campylobacter fetus subsp. fetus 82-40 lipid export ABC transport protein YP_891962.1 796942 R 360106 CDS YP_891963.1 118475287 4539138 complement(798657..800036) 1 NC_008599.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 800036 cysS 4539138 cysS Campylobacter fetus subsp. fetus 82-40 cysteinyl-tRNA synthetase YP_891963.1 798657 R 360106 CDS YP_891964.1 118475298 4539538 complement(800020..801420) 1 NC_008599.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 801420 mviN 4539538 mviN Campylobacter fetus subsp. fetus 82-40 integral membrane protein MviN YP_891964.1 800020 R 360106 CDS YP_891965.1 118474344 4538567 complement(801542..801658) 1 NC_008599.1 hypothetical protein 801658 4538567 CFF8240_0790 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891965.1 801542 R 360106 CDS YP_891966.1 118475108 4539444 801778..803652 1 NC_008599.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; putative ATP-dependent RNA helicase RhlE 803652 4539444 CFF8240_0791 Campylobacter fetus subsp. fetus 82-40 putative ATP-dependent RNA helicase RhlE YP_891966.1 801778 D 360106 CDS YP_891967.1 118475723 4538757 803859..804011 1 NC_008599.1 plasmid-related lipoprotein 804011 4538757 CFF8240_0792 Campylobacter fetus subsp. fetus 82-40 plasmid-related lipoprotein YP_891967.1 803859 D 360106 CDS YP_891968.1 118475352 4538459 804726..805277 1 NC_008599.1 identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein B 805277 mobB 4538459 mobB Campylobacter fetus subsp. fetus 82-40 molybdopterin-guanine dinucleotide biosynthesis protein B YP_891968.1 804726 D 360106 CDS YP_891969.1 118475247 4538411 805261..806121 1 NC_008599.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 806121 fbp 4538411 fbp Campylobacter fetus subsp. fetus 82-40 fructose-1,6-bisphosphatase YP_891969.1 805261 D 360106 CDS YP_891970.1 118475572 4538451 806342..806443 1 NC_008599.1 hypothetical protein 806443 4538451 CFF8240_0795 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891970.1 806342 D 360106 CDS YP_891971.1 118474589 4538702 806462..808360 1 NC_008599.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 808360 metG 4538702 metG Campylobacter fetus subsp. fetus 82-40 methionyl-tRNA synthetase YP_891971.1 806462 D 360106 CDS YP_891972.1 118474938 4538901 808360..809340 1 NC_008599.1 hypothetical protein 809340 4538901 CFF8240_0797 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891972.1 808360 D 360106 CDS YP_891973.1 118474814 4538125 809356..809997 1 NC_008599.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; transcriptional regulator 809997 4538125 CFF8240_0798 Campylobacter fetus subsp. fetus 82-40 transcriptional regulator YP_891973.1 809356 D 360106 CDS YP_891974.1 118475191 4539371 810126..810677 1 NC_008599.1 identified by match to protein family HMM PF03264; putative tetraheme cytochrome c 810677 4539371 CFF8240_0799 Campylobacter fetus subsp. fetus 82-40 putative tetraheme cytochrome c YP_891974.1 810126 D 360106 CDS YP_891975.1 118474202 4538519 810689..812074 1 NC_008599.1 hydroxylamine oxidase 812074 4538519 CFF8240_0800 Campylobacter fetus subsp. fetus 82-40 hydroxylamine oxidase YP_891975.1 810689 D 360106 CDS YP_891976.1 118474940 4538903 complement(812926..813972) 1 NC_008599.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; hypothetical protein 813972 4538903 CFF8240_0801 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891976.1 812926 R 360106 CDS YP_891977.1 118474447 4539070 814144..814518 1 NC_008599.1 copper homeostasis protein CutF 814518 4539070 CFF8240_0802 Campylobacter fetus subsp. fetus 82-40 copper homeostasis protein CutF YP_891977.1 814144 D 360106 CDS YP_891978.1 118474300 4538998 814515..815708 1 NC_008599.1 identified by match to protein family HMM PF04332; match to protein family HMM PF07690; putative integral membrane protein 815708 4538998 CFF8240_0804 Campylobacter fetus subsp. fetus 82-40 putative integral membrane protein YP_891978.1 814515 D 360106 CDS YP_891979.1 118475023 4538417 complement(815703..816497) 1 NC_008599.1 identified by match to protein family HMM PF01739; CheR methyltransferase SAM-binding domain-containing protein 816497 cheR 4538417 cheR Campylobacter fetus subsp. fetus 82-40 CheR methyltransferase SAM-binding domain-containing protein YP_891979.1 815703 R 360106 CDS YP_891980.1 118475751 4538184 complement(816490..817056) 1 NC_008599.1 identified by match to protein family HMM PF01339; chemotaxis response regulator protein-glutamate methylesterase 817056 4538184 CFF8240_0805 Campylobacter fetus subsp. fetus 82-40 chemotaxis response regulator protein-glutamate methylesterase YP_891980.1 816490 R 360106 CDS YP_891981.1 118474970 4537851 817267..819147 1 NC_008599.1 hypothetical protein 819147 4537851 CFF8240_0806 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891981.1 817267 D 360106 CDS YP_891982.1 118475489 4538368 819150..819704 1 NC_008599.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 819704 ruvA 4538368 ruvA Campylobacter fetus subsp. fetus 82-40 Holliday junction DNA helicase RuvA YP_891982.1 819150 D 360106 CDS YP_891983.1 118474718 4539276 819713..820750 1 NC_008599.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 820750 ddl 4539276 ddl Campylobacter fetus subsp. fetus 82-40 D-alanyl-alanine synthetase A YP_891983.1 819713 D 360106 CDS YP_891984.1 118475326 4539392 820819..821055 1 NC_008599.1 hypothetical protein 821055 4539392 CFF8240_0809 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891984.1 820819 D 360106 CDS YP_891985.1 118475498 4538377 821045..821839 1 NC_008599.1 alpha/beta hydrolase 821839 4538377 CFF8240_0810 Campylobacter fetus subsp. fetus 82-40 alpha/beta hydrolase YP_891985.1 821045 D 360106 CDS YP_891986.1 118474991 4539516 821832..823268 1 NC_008599.1 Mur ligase family protein 823268 4539516 CFF8240_0811 Campylobacter fetus subsp. fetus 82-40 Mur ligase family protein YP_891986.1 821832 D 360106 CDS YP_891987.1 118474446 4539069 complement(823333..824532) 1 NC_008599.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 824532 ackA 4539069 ackA Campylobacter fetus subsp. fetus 82-40 acetate kinase YP_891987.1 823333 R 360106 CDS YP_891988.1 118475502 4539475 complement(824533..825927) 1 NC_008599.1 identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651; phosphate acetyltransferase 825927 4539475 CFF8240_0813 Campylobacter fetus subsp. fetus 82-40 phosphate acetyltransferase YP_891988.1 824533 R 360106 CDS YP_891989.1 118474322 4538853 826003..826707 1 NC_008599.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 826707 flgH 4538853 flgH Campylobacter fetus subsp. fetus 82-40 flagellar basal body L-ring protein YP_891989.1 826003 D 360106 CDS YP_891990.1 118475013 4538053 826892..827515 1 NC_008599.1 identified by match to protein family HMM PF03713; hypothetical protein 827515 4538053 CFF8240_0815 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891990.1 826892 D 360106 CDS YP_891991.1 118474062 4538725 827700..829376 1 NC_008599.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine resistant; also known as acetolactate synthase 3 large subunit; acetolactate synthase 3 catalytic subunit 829376 ilvB 4538725 ilvB Campylobacter fetus subsp. fetus 82-40 acetolactate synthase 3 catalytic subunit YP_891991.1 827700 D 360106 CDS YP_891992.1 118475062 4538806 829380..829841 1 NC_008599.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 829841 ilvH 4538806 ilvH Campylobacter fetus subsp. fetus 82-40 acetolactate synthase 3 regulatory subunit YP_891992.1 829380 D 360106 CDS YP_891993.1 118474099 4537912 829841..830788 1 NC_008599.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 830788 lpxD 4537912 lpxD Campylobacter fetus subsp. fetus 82-40 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_891993.1 829841 D 360106 CDS YP_891994.1 118475767 4539029 830785..831012 1 NC_008599.1 hypothetical protein 831012 4539029 CFF8240_0820 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_891994.1 830785 D 360106 CDS YP_891995.1 118474566 4538095 complement(831009..831617) 1 NC_008599.1 DedA family protein 831617 dedA 4538095 dedA Campylobacter fetus subsp. fetus 82-40 DedA family protein YP_891995.1 831009 R 360106 CDS YP_891996.1 118474340 4538563 831727..832557 1 NC_008599.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 832557 nadC 4538563 nadC Campylobacter fetus subsp. fetus 82-40 nicotinate-nucleotide pyrophosphorylase YP_891996.1 831727 D 360106 CDS YP_891997.1 118475520 4538223 832758..833588 1 NC_008599.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00655; formyltetrahydrofolate deformylase 833588 purU 4538223 purU Campylobacter fetus subsp. fetus 82-40 formyltetrahydrofolate deformylase YP_891997.1 832758 D 360106 CDS YP_891998.1 118474338 4538561 833589..834077 1 NC_008599.1 identified by match to protein family HMM PF00588; tRNA/rRNA methyltransferase 834077 4538561 CFF8240_0823 Campylobacter fetus subsp. fetus 82-40 tRNA/rRNA methyltransferase YP_891998.1 833589 D 360106 CDS YP_891999.1 118475423 4539336 834065..835360 1 NC_008599.1 identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase 835360 4539336 CFF8240_0824 Campylobacter fetus subsp. fetus 82-40 endonuclease/exonuclease/phosphatase YP_891999.1 834065 D 360106 CDS YP_892000.1 118474646 4539315 835353..835535 1 NC_008599.1 hypothetical protein 835535 4539315 CFF8240_0825 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892000.1 835353 D 360106 CDS YP_892001.1 118475036 4538432 835642..837657 1 NC_008599.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 837657 glyS 4538432 glyS Campylobacter fetus subsp. fetus 82-40 glycyl-tRNA synthetase subunit beta YP_892001.1 835642 D 360106 CDS YP_892002.1 118474860 4538309 837654..838742 1 NC_008599.1 identified by match to protein family HMM PF02086; DNA modification methylase 838742 4538309 CFF8240_0827 Campylobacter fetus subsp. fetus 82-40 DNA modification methylase YP_892002.1 837654 D 360106 CDS YP_892003.1 118474278 4539459 complement(838778..839179) 1 NC_008599.1 hypothetical protein 839179 4539459 CFF8240_0828 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892003.1 838778 R 360106 CDS YP_892004.1 118475438 4539351 complement(839176..839325) 1 NC_008599.1 hypothetical protein 839325 4539351 CFF8240_0829 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892004.1 839176 R 360106 CDS YP_892005.1 118474106 4538653 complement(839423..840850) 1 NC_008599.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino acid carrier protein 840850 4538653 CFF8240_0830 Campylobacter fetus subsp. fetus 82-40 amino acid carrier protein YP_892005.1 839423 R 360106 CDS YP_892006.1 118475026 4538422 complement(840919..842994) 1 NC_008599.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; metal transporting atpase Mta72 842994 4538422 CFF8240_0831 Campylobacter fetus subsp. fetus 82-40 metal transporting atpase Mta72 YP_892006.1 840919 R 360106 CDS YP_892007.1 118474798 4539185 complement(842981..843268) 1 NC_008599.1 hypothetical protein 843268 4539185 CFF8240_0832 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892007.1 842981 R 360106 CDS YP_892008.1 118474115 4538664 complement(843265..843567) 1 NC_008599.1 hypothetical protein 843567 4538664 CFF8240_0833 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892008.1 843265 R 360106 CDS YP_892009.1 118475044 4538788 complement(843600..843893) 1 NC_008599.1 hypothetical protein 843893 4538788 CFF8240_0834 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892009.1 843600 R 360106 CDS YP_892010.1 118474461 4537943 complement(843886..844521) 1 NC_008599.1 hypothetical protein 844521 4537943 CFF8240_0835 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892010.1 843886 R 360106 CDS YP_892011.1 118475457 4539233 complement(844511..844834) 1 NC_008599.1 hypothetical protein 844834 4539233 CFF8240_0836 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892011.1 844511 R 360106 CDS YP_892012.1 118474490 4537830 845017..845226 1 NC_008599.1 hypothetical protein 845226 4537830 CFF8240_0837 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892012.1 845017 D 360106 CDS YP_892013.1 118475717 4538750 845294..846103 1 NC_008599.1 identified by match to protein family HMM PF01551; M24/M37 family peptidase 846103 4538750 CFF8240_0838 Campylobacter fetus subsp. fetus 82-40 M24/M37 family peptidase YP_892013.1 845294 D 360106 CDS YP_892014.1 118474788 4539428 846167..846589 1 NC_008599.1 hypothetical protein 846589 4539428 CFF8240_0839 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892014.1 846167 D 360106 CDS YP_892015.1 118474091 4537904 846590..847258 1 NC_008599.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional activator protein CopR 847258 4537904 CFF8240_0840 Campylobacter fetus subsp. fetus 82-40 transcriptional activator protein CopR YP_892015.1 846590 D 360106 CDS YP_892016.1 118475195 4538240 847248..848372 1 NC_008599.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 848372 4538240 CFF8240_0841 Campylobacter fetus subsp. fetus 82-40 sensor histidine kinase YP_892016.1 847248 D 360106 CDS YP_892017.1 118474439 4538985 848522..849745 1 NC_008599.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 849745 argG 4538985 argG Campylobacter fetus subsp. fetus 82-40 argininosuccinate synthase YP_892017.1 848522 D 360106 CDS YP_892018.1 118474094 4537907 849810..850874 1 NC_008599.1 identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 850874 4537907 CFF8240_0843 Campylobacter fetus subsp. fetus 82-40 phage integrase family site specific recombinase YP_892018.1 849810 D 360106 CDS YP_892019.1 118475699 4539016 851026..852210 1 NC_008599.1 identified by match to protein family HMM PF01098; cell cycle protein FtsW 852210 4539016 CFF8240_0844 Campylobacter fetus subsp. fetus 82-40 cell cycle protein FtsW YP_892019.1 851026 D 360106 CDS YP_892020.1 118474728 4538541 852207..853214 1 NC_008599.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 853214 murG 4538541 murG Campylobacter fetus subsp. fetus 82-40 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_892020.1 852207 D 360106 CDS YP_892021.1 118475521 4538224 853381..853695 1 NC_008599.1 identified by match to protein family HMM PF00216; DNA-binding protein HU 853695 4538224 CFF8240_0846 Campylobacter fetus subsp. fetus 82-40 DNA-binding protein HU YP_892021.1 853381 D 360106 CDS YP_892022.1 118474543 4538072 853938..854351 1 NC_008599.1 identified by match to protein family HMM PF01618; match to protein family HMM TIGR02805; TonB-system energizer ExbB 854351 exbB 4538072 exbB Campylobacter fetus subsp. fetus 82-40 TonB-system energizer ExbB YP_892022.1 853938 D 360106 CDS YP_892023.1 118474281 4539462 854354..854740 1 NC_008599.1 identified by match to protein family HMM PF02472; match to protein family HMM TIGR02804; TonB system transport protein ExbD 854740 expD 4539462 expD Campylobacter fetus subsp. fetus 82-40 TonB system transport protein ExbD YP_892023.1 854354 D 360106 CDS YP_892024.1 118475021 4538062 854733..855482 1 NC_008599.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB 855482 4538062 CFF8240_0849 Campylobacter fetus subsp. fetus 82-40 TonB YP_892024.1 854733 D 360106 CDS YP_892025.1 118474232 4538277 855520..855765 1 NC_008599.1 identified by match to protein family HMM PF01479; S4 domain-containing protein 855765 4538277 CFF8240_0850 Campylobacter fetus subsp. fetus 82-40 S4 domain-containing protein YP_892025.1 855520 D 360106 CDS YP_892026.1 118475620 4538285 855749..856150 1 NC_008599.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 856150 4538285 CFF8240_0851 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892026.1 855749 D 360106 CDS YP_892027.1 118474771 4538838 856143..856871 1 NC_008599.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 856871 4538838 CFF8240_0852 Campylobacter fetus subsp. fetus 82-40 ABC transporter ATP-binding protein YP_892027.1 856143 D 360106 CDS YP_892028.1 118474428 4538973 856871..858109 1 NC_008599.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 858109 rpoN 4538973 rpoN Campylobacter fetus subsp. fetus 82-40 RNA polymerase factor sigma-54 YP_892028.1 856871 D 360106 CDS YP_892029.1 118474908 4539063 858196..859236 1 NC_008599.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 859236 aroB 4539063 aroB Campylobacter fetus subsp. fetus 82-40 3-dehydroquinate synthase YP_892029.1 858196 D 360106 CDS YP_892030.1 118475324 4539390 859233..860813 1 NC_008599.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 860813 4539390 CFF8240_0855 Campylobacter fetus subsp. fetus 82-40 mechanosensitive ion channel family protein YP_892030.1 859233 D 360106 CDS YP_892031.1 118474280 4539461 860810..862051 1 NC_008599.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; hypothetical protein 862051 4539461 CFF8240_0856 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892031.1 860810 D 360106 CDS YP_892032.1 118475540 4538146 862029..863699 1 NC_008599.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; atpase ec atp-dependent Zn protease 863699 4538146 CFF8240_0857 Campylobacter fetus subsp. fetus 82-40 atpase ec atp-dependent Zn protease YP_892032.1 862029 D 360106 CDS YP_892033.1 118474497 4537838 863689..864219 1 NC_008599.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdopterin biosynthesis mog protein 864219 4537838 CFF8240_0858 Campylobacter fetus subsp. fetus 82-40 molybdopterin biosynthesis mog protein YP_892033.1 863689 D 360106 CDS YP_892034.1 118474783 4539423 complement(864475..865092) 1 NC_008599.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 865092 4539423 CFF8240_0859 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892034.1 864475 R 360106 CDS YP_892035.1 118475534 4538237 complement(865089..866201) 1 NC_008599.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; RIP metalloprotease RseP 866201 rseP 4538237 rseP Campylobacter fetus subsp. fetus 82-40 RIP metalloprotease RseP YP_892035.1 865089 R 360106 CDS YP_892036.1 118474962 4537999 866330..866971 1 NC_008599.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 866971 rpe 4537999 rpe Campylobacter fetus subsp. fetus 82-40 ribulose-phosphate 3-epimerase YP_892036.1 866330 D 360106 CDS YP_892037.1 118474671 4539554 866984..867781 1 NC_008599.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 867781 4539554 CFF8240_0863 Campylobacter fetus subsp. fetus 82-40 DNA polymerase III subunit epsilon YP_892037.1 866984 D 360106 CDS YP_892038.1 118475742 4538351 complement(867774..869606) 1 NC_008599.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 869606 priA 4538351 priA Campylobacter fetus subsp. fetus 82-40 primosome assembly protein PriA YP_892038.1 867774 R 360106 CDS YP_892039.1 118475691 4538512 complement(869614..870024) 1 NC_008599.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; N-terminal methylation domain-containing protein 870024 4538512 CFF8240_0864 Campylobacter fetus subsp. fetus 82-40 N-terminal methylation domain-containing protein YP_892039.1 869614 R 360106 CDS YP_892040.1 118475315 4539381 complement(870051..870812) 1 NC_008599.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; N-terminal methylation domain-containing protein 870812 4539381 CFF8240_0865 Campylobacter fetus subsp. fetus 82-40 N-terminal methylation domain-containing protein YP_892040.1 870051 R 360106 CDS YP_892041.1 118475408 4538206 complement(870809..871441) 1 NC_008599.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; N-terminal methylation domain-containing protein 871441 4538206 CFF8240_0866 Campylobacter fetus subsp. fetus 82-40 N-terminal methylation domain-containing protein YP_892041.1 870809 R 360106 CDS YP_892042.1 118475091 4538176 complement(871461..871577) 1 NC_008599.1 hypothetical protein 871577 4538176 CFF8240_0867 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892042.1 871461 R 360106 CDS YP_892043.1 118474346 4538569 complement(871766..871969) 1 NC_008599.1 transformation system protein 871969 4538569 CFF8240_0868 Campylobacter fetus subsp. fetus 82-40 transformation system protein YP_892043.1 871766 R 360106 CDS YP_892044.1 118475614 4539510 complement(872056..872280) 1 NC_008599.1 hypothetical protein 872280 4539510 CFF8240_0869 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892044.1 872056 R 360106 CDS YP_892045.1 118474827 4538138 complement(872277..872510) 1 NC_008599.1 hypothetical protein 872510 4538138 CFF8240_0870 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892045.1 872277 R 360106 CDS YP_892046.1 118475355 4538462 872702..874678 1 NC_008599.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 874678 uvrB 4538462 uvrB Campylobacter fetus subsp. fetus 82-40 excinuclease ABC subunit B YP_892046.1 872702 D 360106 CDS YP_892047.1 118474602 4538112 875040..876086 1 NC_008599.1 identified by match to protein family HMM PF03929; putative iron-regulated membrane protein 876086 4538112 CFF8240_0872 Campylobacter fetus subsp. fetus 82-40 putative iron-regulated membrane protein YP_892047.1 875040 D 360106 CDS YP_892048.1 118475112 4539448 876113..878251 1 NC_008599.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; outer membrane receptor for Fe 878251 4539448 CFF8240_0873 Campylobacter fetus subsp. fetus 82-40 outer membrane receptor for Fe YP_892048.1 876113 D 360106 CDS YP_892049.1 118474324 4538855 878575..879894 1 NC_008599.1 identified by match to protein family HMM PF01554; putative integral membrane protein 879894 4538855 CFF8240_0874 Campylobacter fetus subsp. fetus 82-40 putative integral membrane protein YP_892049.1 878575 D 360106 CDS YP_892050.1 118475262 4539112 880007..882097 1 NC_008599.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 882097 ppk 4539112 ppk Campylobacter fetus subsp. fetus 82-40 polyphosphate kinase YP_892050.1 880007 D 360106 CDS YP_892051.1 118475235 4538399 882794..883066 1 NC_008599.1 hypothetical protein 883066 4538399 CFF8240_0876 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892051.1 882794 D 360106 CDS YP_892052.1 118474569 4538098 883145..885400 1 NC_008599.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 885400 metE 4538098 metE Campylobacter fetus subsp. fetus 82-40 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_892052.1 883145 D 360106 CDS YP_892053.1 118475462 4538572 885458..886351 1 NC_008599.1 hypothetical protein 886351 4538572 CFF8240_0878 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892053.1 885458 D 360106 CDS YP_892054.1 118475455 4539231 complement(888706..889185) 1 NC_008599.1 identified by match to protein family HMM PF00300; phosphohistidine phosphatase SixA 889185 4539231 CFF8240_0881 Campylobacter fetus subsp. fetus 82-40 phosphohistidine phosphatase SixA YP_892054.1 888706 R 360106 CDS YP_892055.1 118474946 4538909 complement(889182..889985) 1 NC_008599.1 identified by match to protein family HMM PF04305; hypothetical protein 889985 4538909 CFF8240_0882 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892055.1 889182 R 360106 CDS YP_892056.1 118474503 4539282 complement(889982..890500) 1 NC_008599.1 identified by match to protein family HMM PF01694; rhomboid family protein 890500 4539282 CFF8240_0883 Campylobacter fetus subsp. fetus 82-40 rhomboid family protein YP_892056.1 889982 R 360106 CDS YP_892057.1 118474541 4538070 890695..891429 1 NC_008599.1 identified by match to protein family HMM PF02754; hypothetical protein 891429 4538070 CFF8240_0884 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892057.1 890695 D 360106 CDS YP_892058.1 118474315 4538846 891426..892850 1 NC_008599.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273; iron-sulfur cluster binding protein 892850 4538846 CFF8240_0885 Campylobacter fetus subsp. fetus 82-40 iron-sulfur cluster binding protein YP_892058.1 891426 D 360106 CDS YP_892059.1 118475274 4539125 892843..893484 1 NC_008599.1 identified by match to protein family HMM PF02589; hypothetical protein 893484 4539125 CFF8240_0886 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892059.1 892843 D 360106 CDS YP_892060.1 118474141 4538027 complement(893573..894202) 1 NC_008599.1 hypothetical protein 894202 4538027 CFF8240_0887 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892060.1 893573 R 360106 CDS YP_892061.1 118474135 4538336 894308..895567 1 NC_008599.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 895567 murA 4538336 murA Campylobacter fetus subsp. fetus 82-40 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_892061.1 894308 D 360106 CDS YP_892062.1 118475083 4538168 895579..896757 1 NC_008599.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM TIGR00177; molybdopterin biosynthesis enzyme 896757 4538168 CFF8240_0889 Campylobacter fetus subsp. fetus 82-40 molybdopterin biosynthesis enzyme YP_892062.1 895579 D 360106 CDS YP_892063.1 118474723 4538536 896761..897537 1 NC_008599.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 897537 flgA 4538536 flgA Campylobacter fetus subsp. fetus 82-40 flagellar basal body P-ring biosynthesis protein FlgA YP_892063.1 896761 D 360106 CDS YP_892064.1 118475446 4539222 897541..898020 1 NC_008599.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 898020 coaD 4539222 coaD Campylobacter fetus subsp. fetus 82-40 phosphopantetheine adenylyltransferase YP_892064.1 897541 D 360106 CDS YP_892065.1 118474238 4537871 898014..898592 1 NC_008599.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 898592 tmk 4537871 tmk Campylobacter fetus subsp. fetus 82-40 thymidylate kinase YP_892065.1 898014 D 360106 CDS YP_892066.1 118474445 4539067 898589..899818 1 NC_008599.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 899818 hisS 4539067 hisS Campylobacter fetus subsp. fetus 82-40 histidyl-tRNA synthetase YP_892066.1 898589 D 360106 CDS YP_892067.1 118474532 4538020 899815..901656 1 NC_008599.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 901656 speA 4538020 speA Campylobacter fetus subsp. fetus 82-40 arginine decarboxylase YP_892067.1 899815 D 360106 CDS YP_892068.1 118475522 4538225 901660..902355 1 NC_008599.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine O-acetyltransferase 902355 cysE 4538225 cysE Campylobacter fetus subsp. fetus 82-40 serine O-acetyltransferase YP_892068.1 901660 D 360106 CDS YP_892069.1 118474561 4538090 902361..903530 1 NC_008599.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 903530 4538090 CFF8240_0897 Campylobacter fetus subsp. fetus 82-40 aspartate aminotransferase YP_892069.1 902361 D 360106 CDS YP_892070.1 118475557 4538436 903530..904531 1 NC_008599.1 identified by match to protein family HMM PF00535; sugar transferase 904531 4538436 CFF8240_0898 Campylobacter fetus subsp. fetus 82-40 sugar transferase YP_892070.1 903530 D 360106 CDS YP_892071.1 118474187 4537760 904646..906436 1 NC_008599.1 identified by match to protein family HMM PF05787; twin-arginine translocation pathway signal 906436 4537760 CFF8240_0899 Campylobacter fetus subsp. fetus 82-40 twin-arginine translocation pathway signal YP_892071.1 904646 D 360106 CDS YP_892072.1 118475752 4538185 complement(906500..906985) 1 NC_008599.1 identified by match to protein family HMM PF00258; flavodoxin 906985 4538185 CFF8240_0900 Campylobacter fetus subsp. fetus 82-40 flavodoxin YP_892072.1 906500 R 360106 CDS YP_892073.1 118474474 4537956 complement(907135..907260) 1 NC_008599.1 hypothetical protein 907260 4537956 CFF8240_0901 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892073.1 907135 R 360106 CDS YP_892074.1 118474984 4537865 907435..908412 1 NC_008599.1 identified by match to protein family HMM PF03401; tricarboxylic transport 908412 4537865 CFF8240_0902 Campylobacter fetus subsp. fetus 82-40 tricarboxylic transport YP_892074.1 907435 D 360106 CDS YP_892075.1 118475536 4538239 908409..908852 1 NC_008599.1 putative tricarboxylic transport membrane protein 908852 4538239 CFF8240_0903 Campylobacter fetus subsp. fetus 82-40 putative tricarboxylic transport membrane protein YP_892075.1 908409 D 360106 CDS YP_892076.1 118475141 4539203 complement(909804..910355) 1 NC_008599.1 identified by match to protein family HMM PF01558; 2-oxoglutarate-acceptor oxidoreductase subunit OorC 910355 oorC 4539203 oorC Campylobacter fetus subsp. fetus 82-40 2-oxoglutarate-acceptor oxidoreductase subunit OorC YP_892076.1 909804 R 360106 CDS YP_892077.1 118474134 4538335 complement(910352..911197) 1 NC_008599.1 identified by match to protein family HMM PF02775; 2-oxoglutarate-acceptor oxidoreductase subunit OorB 911197 oorB 4538335 oorB Campylobacter fetus subsp. fetus 82-40 2-oxoglutarate-acceptor oxidoreductase subunit OorB YP_892077.1 910352 R 360106 CDS YP_892078.1 118474959 4537996 complement(911199..912320) 1 NC_008599.1 identified by match to protein family HMM PF01855; 2-oxoglutarate-acceptor oxidoreductase subunit OorA 912320 oorA 4537996 oorA Campylobacter fetus subsp. fetus 82-40 2-oxoglutarate-acceptor oxidoreductase subunit OorA YP_892078.1 911199 R 360106 CDS YP_892079.1 118475118 4539317 complement(912332..912637) 1 NC_008599.1 identified by match to protein family HMM PF00037; 2-oxoglutarate-acceptor oxidoreductase subunit OorD 912637 oorD 4539317 oorD Campylobacter fetus subsp. fetus 82-40 2-oxoglutarate-acceptor oxidoreductase subunit OorD YP_892079.1 912332 R 360106 CDS YP_892080.1 118474078 4538741 complement(912650..913522) 1 NC_008599.1 identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthetase, alpha subunit 913522 sucD 4538741 sucD Campylobacter fetus subsp. fetus 82-40 succinyl-CoA synthetase, alpha subunit YP_892080.1 912650 R 360106 CDS YP_892081.1 118474689 4538383 complement(913532..914689) 1 NC_008599.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 914689 sucC 4538383 sucC Campylobacter fetus subsp. fetus 82-40 succinyl-CoA synthetase subunit beta YP_892081.1 913532 R 360106 CDS YP_892082.1 118474331 4538553 complement(914784..915704) 1 NC_008599.1 identified by match to protein family HMM PF00056; match to protein family HMM PF00070; match to protein family HMM PF02866; malate dehydrogenase 915704 4538553 CFF8240_0912 Campylobacter fetus subsp. fetus 82-40 malate dehydrogenase YP_892082.1 914784 R 360106 CDS YP_892083.1 118475695 4539012 complement(915706..917898) 1 NC_008599.1 identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178; isocitrate dehydrogenase 917898 4539012 CFF8240_0913 Campylobacter fetus subsp. fetus 82-40 isocitrate dehydrogenase YP_892083.1 915706 R 360106 CDS YP_892084.1 118474513 4539292 complement(918085..919158) 1 NC_008599.1 identified by match to protein family HMM PF03595; C4-dicarboxylate transporter/malic acid transport protein 919158 4539292 CFF8240_0914 Campylobacter fetus subsp. fetus 82-40 C4-dicarboxylate transporter/malic acid transport protein YP_892084.1 918085 R 360106 CDS YP_892085.1 118474245 4537878 complement(919197..919814) 1 NC_008599.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD-superfamily hydrolase 919814 4537878 CFF8240_0915 Campylobacter fetus subsp. fetus 82-40 HAD-superfamily hydrolase YP_892085.1 919197 R 360106 CDS YP_892086.1 118475149 4539211 complement(919807..920130) 1 NC_008599.1 hypothetical protein 920130 4539211 CFF8240_0916 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892086.1 919807 R 360106 CDS YP_892087.1 118474893 4539048 complement(920301..921731) 1 NC_008599.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780; succinate-semialdehyde dehydrogenase(NADP+) 921731 4539048 CFF8240_0917 Campylobacter fetus subsp. fetus 82-40 succinate-semialdehyde dehydrogenase(NADP+) YP_892087.1 920301 R 360106 CDS YP_892088.1 118474987 4539512 complement(921851..923185) 1 NC_008599.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 923185 hcp 4539512 hcp Campylobacter fetus subsp. fetus 82-40 hydroxylamine reductase YP_892088.1 921851 R 360106 CDS YP_892089.1 118474795 4539182 923442..924713 1 NC_008599.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326; O-acetylhomoserine sulfhydrylase 924713 4539182 CFF8240_0919 Campylobacter fetus subsp. fetus 82-40 O-acetylhomoserine sulfhydrylase YP_892089.1 923442 D 360106 CDS YP_892090.1 118475649 4538682 924746..925123 1 NC_008599.1 identified by match to protein family HMM PF02082; BadM/Rrf2 family transcriptional regulator 925123 4538682 CFF8240_0920 Campylobacter fetus subsp. fetus 82-40 BadM/Rrf2 family transcriptional regulator YP_892090.1 924746 D 360106 CDS YP_892091.1 118474133 4538334 925134..926048 1 NC_008599.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 926048 cysK 4538334 cysK Campylobacter fetus subsp. fetus 82-40 cysteine synthase A YP_892091.1 925134 D 360106 CDS YP_892092.1 118475339 4538620 complement(926045..926392) 1 NC_008599.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 926392 acpS 4538620 acpS Campylobacter fetus subsp. fetus 82-40 4'-phosphopantetheinyl transferase YP_892092.1 926045 R 360106 CDS YP_892093.1 118474507 4539286 complement(926389..926916) 1 NC_008599.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 926916 fliL 4539286 fliL Campylobacter fetus subsp. fetus 82-40 flagellar basal body-associated protein FliL YP_892093.1 926389 R 360106 CDS YP_892094.1 118474104 4538651 complement(926992..927858) 1 NC_008599.1 identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase family protein 927858 4538651 CFF8240_0924 Campylobacter fetus subsp. fetus 82-40 fumarylacetoacetate hydrolase family protein YP_892094.1 926992 R 360106 CDS YP_892095.1 118475114 4539450 complement(927859..929022) 1 NC_008599.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 929022 4539450 CFF8240_0925 Campylobacter fetus subsp. fetus 82-40 acetylornithine aminotransferase YP_892095.1 927859 R 360106 CDS YP_892096.1 118474290 4539471 complement(929025..929648) 1 NC_008599.1 identified by match to protein family HMM PF03458; hypothetical protein 929648 4539471 CFF8240_0926 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892096.1 929025 R 360106 CDS YP_892097.1 118475244 4538408 complement(929747..930742) 1 NC_008599.1 identified by match to protein family HMM PF02618; hypothetical protein 930742 4538408 CFF8240_0927 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892097.1 929747 R 360106 CDS YP_892098.1 118475731 4538340 931203..933170 1 NC_008599.1 hypothetical protein 933170 4538340 CFF8240_0928 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892098.1 931203 D 360106 CDS YP_892099.1 118475035 4538431 complement(933176..933517) 1 NC_008599.1 identified by match to protein family HMM PF01155; hydrogenase expression/synthesis, HypA 933517 4538431 CFF8240_0929 Campylobacter fetus subsp. fetus 82-40 hydrogenase expression/synthesis, HypA YP_892099.1 933176 R 360106 CDS YP_892100.1 118474275 4539456 complement(933531..934541) 1 NC_008599.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 934541 hypE 4539456 hypE Campylobacter fetus subsp. fetus 82-40 hydrogenase expression/formation protein HypE YP_892100.1 933531 R 360106 CDS YP_892101.1 118475335 4538616 complement(934525..935613) 1 NC_008599.1 identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 935613 hypD 4538616 hypD Campylobacter fetus subsp. fetus 82-40 hydrogenase expression/formation protein HypD YP_892101.1 934525 R 360106 CDS YP_892102.1 118475307 4539547 complement(935613..935891) 1 NC_008599.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF 935891 hypC 4539547 hypC Campylobacter fetus subsp. fetus 82-40 hydrogenase assembly chaperone HypC/HupF YP_892102.1 935613 R 360106 CDS YP_892103.1 118474600 4538110 complement(935891..936679) 1 NC_008599.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB 936679 hypB 4538110 hypB Campylobacter fetus subsp. fetus 82-40 hydrogenase nickel incorporation protein HypB YP_892103.1 935891 R 360106 CDS YP_892104.1 118475179 4539359 complement(936703..937125) 1 NC_008599.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 937125 4539359 CFF8240_0934 Campylobacter fetus subsp. fetus 82-40 nickel responsive regulator YP_892104.1 936703 R 360106 CDS YP_892105.1 118474454 4539077 complement(937139..939364) 1 NC_008599.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 939364 hypF 4539077 hypF Campylobacter fetus subsp. fetus 82-40 [NiFe] hydrogenase maturation protein HypF YP_892105.1 937139 R 360106 CDS YP_892106.1 118475232 4539179 complement(939351..940790) 1 NC_008599.1 hypothetical protein 940790 4539179 CFF8240_0936 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892106.1 939351 R 360106 CDS YP_892107.1 118474372 4538916 complement(940787..941326) 1 NC_008599.1 identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; hydrogenase maturation protease HydD 941326 4538916 CFF8240_0937 Campylobacter fetus subsp. fetus 82-40 hydrogenase maturation protease HydD YP_892107.1 940787 R 360106 CDS YP_892108.1 118474674 4539558 complement(941331..942008) 1 NC_008599.1 identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; Ni/Fe-hydrogenase, B-type cytochrome subunit 942008 cybH 4539558 cybH Campylobacter fetus subsp. fetus 82-40 Ni/Fe-hydrogenase, B-type cytochrome subunit YP_892108.1 941331 R 360106 CDS YP_892109.1 118475447 4539223 complement(942019..943740) 1 NC_008599.1 identified by match to protein family HMM PF00374; quinone-reactive Ni/Fe-hydrogenase large chain 943740 4539223 CFF8240_0939 Campylobacter fetus subsp. fetus 82-40 quinone-reactive Ni/Fe-hydrogenase large chain YP_892109.1 942019 R 360106 CDS YP_892110.1 118474859 4538308 complement(943744..944895) 1 NC_008599.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; quinone-reactive Ni/Fe-hydrogenase small chain 944895 4538308 CFF8240_0940 Campylobacter fetus subsp. fetus 82-40 quinone-reactive Ni/Fe-hydrogenase small chain YP_892110.1 943744 R 360106 CDS YP_892111.1 118475663 4538959 complement(945073..945384) 1 NC_008599.1 identified by match to protein family HMM PF05437; branched-chain amino acid transport protein AzlD 945384 4538959 CFF8240_0941 Campylobacter fetus subsp. fetus 82-40 branched-chain amino acid transport protein AzlD YP_892111.1 945073 R 360106 CDS YP_892112.1 118474292 4538990 complement(945384..946046) 1 NC_008599.1 identified by match to protein family HMM PF03591; branched-chain amino acid transport protein 946046 4538990 CFF8240_0942 Campylobacter fetus subsp. fetus 82-40 branched-chain amino acid transport protein YP_892112.1 945384 R 360106 CDS YP_892113.1 118475028 4538424 complement(946203..948776) 1 NC_008599.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; chaperone ClpB 948776 4538424 CFF8240_0943 Campylobacter fetus subsp. fetus 82-40 chaperone ClpB YP_892113.1 946203 R 360106 CDS YP_892114.1 118474694 4538389 948927..950240 1 NC_008599.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 950240 4538389 CFF8240_0944 Campylobacter fetus subsp. fetus 82-40 carboxyl-terminal protease YP_892114.1 948927 D 360106 CDS YP_892115.1 118475715 4538748 950251..950964 1 NC_008599.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 950964 purC 4538748 purC Campylobacter fetus subsp. fetus 82-40 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_892115.1 950251 D 360106 CDS YP_892116.1 118474560 4538089 951093..951323 1 NC_008599.1 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, PurS protein 951323 purS 4538089 purS Campylobacter fetus subsp. fetus 82-40 phosphoribosylformylglycinamidine synthase, PurS protein YP_892116.1 951093 D 360106 CDS YP_892117.1 118475512 4539486 951326..951991 1 NC_008599.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 951991 purQ 4539486 purQ Campylobacter fetus subsp. fetus 82-40 phosphoribosylformylglycinamidine synthase I YP_892117.1 951326 D 360106 CDS YP_892118.1 118475192 4539372 952060..953235 1 NC_008599.1 hypothetical protein 953235 4539372 CFF8240_0948 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892118.1 952060 D 360106 CDS YP_892119.1 118474516 4539295 953219..953896 1 NC_008599.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 953896 4539295 CFF8240_0949 Campylobacter fetus subsp. fetus 82-40 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_892119.1 953219 D 360106 CDS YP_892120.1 118474919 4538941 953893..954279 1 NC_008599.1 identified by match to protein family HMM PF02537; match to protein family HMM TIGR00494; CrcB protein 954279 crcB 4538941 crcB Campylobacter fetus subsp. fetus 82-40 CrcB protein YP_892120.1 953893 D 360106 CDS YP_892121.1 118474269 4537978 complement(954306..954857) 1 NC_008599.1 identified by match to protein family HMM PF03498; cytolethal distending toxin A/C family protein 954857 4537978 CFF8240_0951 Campylobacter fetus subsp. fetus 82-40 cytolethal distending toxin A/C family protein YP_892121.1 954306 R 360106 CDS YP_892122.1 118474904 4539059 complement(955672..956289) 1 NC_008599.1 identified by match to protein family HMM PF03498; cytolethal distending toxin A 956289 4539059 CFF8240_0954 Campylobacter fetus subsp. fetus 82-40 cytolethal distending toxin A YP_892122.1 955672 R 360106 CDS YP_892123.1 118474386 4539142 complement(956576..957127) 1 NC_008599.1 identified by match to protein family HMM PF03498; cytolethal distending toxin A/C family protein 957127 4539142 CFF8240_0955 Campylobacter fetus subsp. fetus 82-40 cytolethal distending toxin A/C family protein YP_892123.1 956576 R 360106 CDS YP_892124.1 118475290 4539141 complement(957137..957931) 1 NC_008599.1 identified by match to protein family HMM PF03372; cytolethal distending toxin 957931 4539141 CFF8240_0956 Campylobacter fetus subsp. fetus 82-40 cytolethal distending toxin YP_892124.1 957137 R 360106 CDS YP_892125.1 118474626 4538604 complement(957940..958641) 1 NC_008599.1 identified by match to protein family HMM PF03498; cytolethal distending toxin A 958641 4538604 CFF8240_0957 Campylobacter fetus subsp. fetus 82-40 cytolethal distending toxin A YP_892125.1 957940 R 360106 CDS YP_892126.1 118475345 4538626 958864..960717 1 NC_008599.1 molecular chaperone; heat shock protein 90 960717 4538626 CFF8240_0958 Campylobacter fetus subsp. fetus 82-40 heat shock protein 90 YP_892126.1 958864 D 360106 CDS YP_892127.1 118474801 4539188 complement(960757..961146) 1 NC_008599.1 identified by match to protein family HMM PF00581; thiosulfate sulfurtransferase 961146 4539188 CFF8240_0959 Campylobacter fetus subsp. fetus 82-40 thiosulfate sulfurtransferase YP_892127.1 960757 R 360106 CDS YP_892128.1 118475607 4539503 961493..962278 1 NC_008599.1 methyltransferase 962278 4539503 CFF8240_0960 Campylobacter fetus subsp. fetus 82-40 methyltransferase YP_892128.1 961493 D 360106 CDS YP_892129.1 118475031 4538427 complement(962348..964387) 1 NC_008599.1 identified by match to protein family HMM PF00580; UvrD/REP helicase 964387 4538427 CFF8240_0961 Campylobacter fetus subsp. fetus 82-40 UvrD/REP helicase YP_892129.1 962348 R 360106 CDS YP_892130.1 118474070 4538733 complement(964444..964557) 1 NC_008599.1 hypothetical protein 964557 4538733 CFF8240_0962 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892130.1 964444 R 360106 CDS YP_892131.1 118475319 4539385 964536..964721 1 NC_008599.1 hypothetical protein 964721 4539385 CFF8240_0963 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892131.1 964536 D 360106 CDS YP_892132.1 118475565 4538444 964978..965877 1 NC_008599.1 hypothetical protein 965877 4538444 CFF8240_0964 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892132.1 964978 D 360106 CDS YP_892133.1 118474555 4538084 complement(965944..967341) 1 NC_008599.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00979; class II fumarate hydratase 967341 fumC 4538084 fumC Campylobacter fetus subsp. fetus 82-40 class II fumarate hydratase YP_892133.1 965944 R 360106 CDS YP_892134.1 118475500 4539473 967516..970137 1 NC_008599.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 970137 valS 4539473 valS Campylobacter fetus subsp. fetus 82-40 valyl-tRNA synthetase YP_892134.1 967516 D 360106 CDS YP_892135.1 118475166 4537779 970134..971102 1 NC_008599.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 971102 4537779 CFF8240_0967 Campylobacter fetus subsp. fetus 82-40 ABC transporter ATP-binding protein YP_892135.1 970134 D 360106 CDS YP_892136.1 118474108 4538657 971099..971740 1 NC_008599.1 identified by match to protein family HMM PF00528; D-methionine transport system permease protein MetI 971740 4538657 CFF8240_0968 Campylobacter fetus subsp. fetus 82-40 D-methionine transport system permease protein MetI YP_892136.1 971099 D 360106 CDS YP_892137.1 118474916 4538938 complement(971799..972590) 1 NC_008599.1 identified by match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 972590 thiD 4538938 thiD Campylobacter fetus subsp. fetus 82-40 phosphomethylpyrimidine kinase YP_892137.1 971799 R 360106 CDS YP_892138.1 118474186 4537759 972878..973651 1 NC_008599.1 identified by match to protein family HMM PF03180; NLPA family lipoprotein 973651 4537759 CFF8240_0970 Campylobacter fetus subsp. fetus 82-40 NLPA family lipoprotein YP_892138.1 972878 D 360106 CDS YP_892139.1 118475728 4538762 973748..973939 1 NC_008599.1 required for 70S ribosome assembly; 50S ribosomal protein L28 973939 rpmB 4538762 rpmB Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L28 YP_892139.1 973748 D 360106 CDS YP_892140.1 118474496 4537836 973959..975089 1 NC_008599.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885; hypothetical protein 975089 4537836 CFF8240_0972 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892140.1 973959 D 360106 CDS YP_892141.1 118475747 4538356 975082..976269 1 NC_008599.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 976269 argJ 4538356 argJ Campylobacter fetus subsp. fetus 82-40 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_892141.1 975082 D 360106 CDS YP_892142.1 118474922 4538944 976331..976558 1 NC_008599.1 identified by match to protein family HMM PF04325; hypothetical protein 976558 4538944 CFF8240_0974 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892142.1 976331 D 360106 CDS YP_892143.1 118474337 4538559 976756..977853 1 NC_008599.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 977853 4538559 CFF8240_0975 Campylobacter fetus subsp. fetus 82-40 methyl-accepting chemotaxis protein YP_892143.1 976756 D 360106 CDS YP_892144.1 118475420 4538218 complement(977879..978982) 1 NC_008599.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 978982 trmA 4538218 trmA Campylobacter fetus subsp. fetus 82-40 tRNA (uracil-5-)-methyltransferase YP_892144.1 977879 R 360106 CDS YP_892145.1 118475151 4539213 complement(978985..979731) 1 NC_008599.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg 979731 4539213 CFF8240_0977 Campylobacter fetus subsp. fetus 82-40 NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg YP_892145.1 978985 R 360106 CDS YP_892146.1 118475575 4538454 complement(979728..980837) 1 NC_008599.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 980837 4538454 CFF8240_0978 Campylobacter fetus subsp. fetus 82-40 ankyrin repeat-containing protein YP_892146.1 979728 R 360106 CDS YP_892147.1 118474864 4538314 complement(980840..982267) 1 NC_008599.1 identified by match to protein family HMM PF02080; TrkA domain-containing protein 982267 4538314 CFF8240_0979 Campylobacter fetus subsp. fetus 82-40 TrkA domain-containing protein YP_892147.1 980840 R 360106 CDS YP_892148.1 118474179 4537752 982305..983429 1 NC_008599.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 983429 tgt 4537752 tgt Campylobacter fetus subsp. fetus 82-40 queuine tRNA-ribosyltransferase YP_892148.1 982305 D 360106 CDS YP_892149.1 118475609 4539505 983426..984157 1 NC_008599.1 hypothetical protein 984157 4539505 CFF8240_0981 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892149.1 983426 D 360106 CDS YP_892150.1 118474379 4538923 complement(984217..985617) 1 NC_008599.1 unwinds double stranded DNA; replicative DNA helicase 985617 dnaB 4538923 dnaB Campylobacter fetus subsp. fetus 82-40 replicative DNA helicase YP_892150.1 984217 R 360106 CDS YP_892151.1 118475323 4539389 complement(985610..986680) 1 NC_008599.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 986680 ispG 4539389 ispG Campylobacter fetus subsp. fetus 82-40 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_892151.1 985610 R 360106 CDS YP_892152.1 118475650 4538683 complement(986812..987477) 1 NC_008599.1 identified by match to protein family HMM PF01863; zinc metalloprotease 987477 4538683 CFF8240_0984 Campylobacter fetus subsp. fetus 82-40 zinc metalloprotease YP_892152.1 986812 R 360106 CDS YP_892153.1 118474840 4538714 complement(987470..990541) 1 NC_008599.1 identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I site-specific deoxyribonuclease HsdR 990541 4538714 CFF8240_0985 Campylobacter fetus subsp. fetus 82-40 type I site-specific deoxyribonuclease HsdR YP_892153.1 987470 R 360106 CDS YP_892154.1 118475265 4539116 complement(990538..991461) 1 NC_008599.1 hypothetical protein 991461 4539116 CFF8240_0986 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892154.1 990538 R 360106 CDS YP_892155.1 118474267 4537976 complement(991461..991985) 1 NC_008599.1 hypothetical protein 991985 4537976 CFF8240_0987 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892155.1 991461 R 360106 CDS YP_892156.1 118474615 4538593 complement(992013..993218) 1 NC_008599.1 identified by match to protein family HMM PF01420; type I restriction-modification system subunit S 993218 4538593 CFF8240_0988 Campylobacter fetus subsp. fetus 82-40 type I restriction-modification system subunit S YP_892156.1 992013 R 360106 CDS YP_892157.1 118474459 4539083 complement(993208..993423) 1 NC_008599.1 hypothetical protein 993423 4539083 CFF8240_0989 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892157.1 993208 R 360106 CDS YP_892158.1 118474825 4538136 complement(993446..994951) 1 NC_008599.1 identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit 994951 hsdM 4538136 hsdM Campylobacter fetus subsp. fetus 82-40 type I restriction-modification system, M subunit YP_892158.1 993446 R 360106 CDS YP_892159.1 118475553 4538159 complement(994957..995544) 1 NC_008599.1 identified by match to protein family HMM PF01420; restriction modification system DNA specificity subunit 995544 4538159 CFF8240_0991 Campylobacter fetus subsp. fetus 82-40 restriction modification system DNA specificity subunit YP_892159.1 994957 R 360106 CDS YP_892160.1 118474794 4539181 995635..999192 1 NC_008599.1 hypothetical protein 999192 4539181 CFF8240_0992 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892160.1 995635 D 360106 CDS YP_892161.1 118475386 4538861 complement(999262..999636) 1 NC_008599.1 hypothetical protein 999636 4538861 CFF8240_0993 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892161.1 999262 R 360106 CDS YP_892162.1 118475387 4538862 999605..999733 1 NC_008599.1 hypothetical protein 999733 4538862 CFF8240_0994 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892162.1 999605 D 360106 CDS YP_892163.1 118474190 4537763 complement(1001644..1004202) 1 NC_008599.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1004202 acnB 4537763 acnB Campylobacter fetus subsp. fetus 82-40 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_892163.1 1001644 R 360106 CDS YP_892164.1 118474928 4538891 1004351..1004809 1 NC_008599.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine methyltransferase 1004809 4538891 CFF8240_0998 Campylobacter fetus subsp. fetus 82-40 methylated-DNA--protein-cysteine methyltransferase YP_892164.1 1004351 D 360106 CDS YP_892165.1 118475176 4539356 complement(1004876..1005892) 1 NC_008599.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 1005892 4539356 CFF8240_0999 Campylobacter fetus subsp. fetus 82-40 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein YP_892165.1 1004876 R 360106 CDS YP_892166.1 118474416 4537800 1006067..1006510 1 NC_008599.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1006510 rplI 4537800 rplI Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L9 YP_892166.1 1006067 D 360106 CDS YP_892167.1 118474850 4538724 1006510..1007052 1 NC_008599.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1007052 4538724 CFF8240_1001 Campylobacter fetus subsp. fetus 82-40 ATP-dependent protease peptidase subunit YP_892167.1 1006510 D 360106 CDS YP_892168.1 118475468 4538578 1007049..1008371 1 NC_008599.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1008371 hslU 4538578 hslU Campylobacter fetus subsp. fetus 82-40 ATP-dependent protease ATP-binding subunit HslU YP_892168.1 1007049 D 360106 CDS YP_892169.1 118475630 4538295 1008368..1009237 1 NC_008599.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1009237 era 4538295 era Campylobacter fetus subsp. fetus 82-40 GTP-binding protein Era YP_892169.1 1008368 D 360106 CDS YP_892170.1 118474853 4538302 1009305..1010792 1 NC_008599.1 hypothetical protein 1010792 4538302 CFF8240_1004 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892170.1 1009305 D 360106 CDS YP_892171.1 118475430 4539343 1010792..1011421 1 NC_008599.1 hypothetical protein 1011421 4539343 CFF8240_1005 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892171.1 1010792 D 360106 CDS YP_892172.1 118474619 4538597 1011418..1011816 1 NC_008599.1 hypothetical protein 1011816 4538597 CFF8240_1006 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892172.1 1011418 D 360106 CDS YP_892173.1 118475530 4538233 1011794..1013332 1 NC_008599.1 identified by match to protein family HMM PF00263; match to protein family HMM PF07655; match to protein family HMM TIGR02519; type II and III secretion system protein 1013332 4538233 CFF8240_1007 Campylobacter fetus subsp. fetus 82-40 type II and III secretion system protein YP_892173.1 1011794 D 360106 CDS YP_892174.1 118474512 4539291 1013329..1014144 1 NC_008599.1 hypothetical protein 1014144 4539291 CFF8240_1008 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892174.1 1013329 D 360106 CDS YP_892175.1 118475724 4538758 1014164..1015066 1 NC_008599.1 hypothetical protein 1015066 4538758 CFF8240_1009 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892175.1 1014164 D 360106 CDS YP_892176.1 118475101 4539437 1015079..1016875 1 NC_008599.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type II secretion system protein E 1016875 4539437 CFF8240_1010 Campylobacter fetus subsp. fetus 82-40 type II secretion system protein E YP_892176.1 1015079 D 360106 CDS YP_892177.1 118475095 4538180 1016872..1018113 1 NC_008599.1 identified by match to protein family HMM PF00482; type II secretion system protein 1018113 4538180 CFF8240_1011 Campylobacter fetus subsp. fetus 82-40 type II secretion system protein YP_892177.1 1016872 D 360106 CDS YP_892178.1 118474114 4538663 1018177..1018692 1 NC_008599.1 identified by match to protein family HMM PF00989; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 1018692 4538663 CFF8240_1012 Campylobacter fetus subsp. fetus 82-40 methyl-accepting chemotaxis protein YP_892178.1 1018177 D 360106 CDS YP_892179.1 118474770 4538837 complement(1019903..1020349) 1 NC_008599.1 identified by match to protein family HMM PF02637; GatB/Yqey family protein 1020349 rsc 4538837 rsc Campylobacter fetus subsp. fetus 82-40 GatB/Yqey family protein YP_892179.1 1019903 R 360106 CDS YP_892180.1 118475349 4538456 complement(1020352..1021230) 1 NC_008599.1 identified by match to protein family HMM PF02541; Ppx/GppA family phosphatase 1021230 4538456 CFF8240_1016 Campylobacter fetus subsp. fetus 82-40 Ppx/GppA family phosphatase YP_892180.1 1020352 R 360106 CDS YP_892181.1 118475008 4538048 complement(1021227..1022333) 1 NC_008599.1 identified by match to protein family HMM PF01743; polyA polymerase family protein 1022333 4538048 CFF8240_1017 Campylobacter fetus subsp. fetus 82-40 polyA polymerase family protein YP_892181.1 1021227 R 360106 CDS YP_892182.1 118475588 4539249 complement(1022293..1022640) 1 NC_008599.1 hypothetical protein 1022640 4539249 CFF8240_1018 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892182.1 1022293 R 360106 CDS YP_892183.1 118474230 4538275 complement(1022637..1022888) 1 NC_008599.1 hypothetical protein 1022888 4538275 CFF8240_1019 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892183.1 1022637 R 360106 CDS YP_892184.1 118475010 4538050 complement(1022885..1023955) 1 NC_008599.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1023955 leuB 4538050 leuB Campylobacter fetus subsp. fetus 82-40 3-isopropylmalate dehydrogenase YP_892184.1 1022885 R 360106 CDS YP_892185.1 118474468 4537950 complement(1023980..1024459) 1 NC_008599.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase small subunit 1024459 leuD 4537950 leuD Campylobacter fetus subsp. fetus 82-40 3-isopropylmalate dehydratase small subunit YP_892185.1 1023980 R 360106 CDS YP_892186.1 118475398 4538875 complement(1024502..1025101) 1 NC_008599.1 identified by match to protein family HMM PF01810; homogentisate export protein 1025101 4538875 CFF8240_1022 Campylobacter fetus subsp. fetus 82-40 homogentisate export protein YP_892186.1 1024502 R 360106 CDS YP_892187.1 118475439 4539352 complement(1025110..1025724) 1 NC_008599.1 identified by match to protein family HMM PF01810; LysE family translocator protein 1025724 4539352 CFF8240_1023 Campylobacter fetus subsp. fetus 82-40 LysE family translocator protein YP_892187.1 1025110 R 360106 CDS YP_892188.1 118474649 4539397 1025834..1026310 1 NC_008599.1 hypothetical protein 1026310 4539397 CFF8240_1024 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892188.1 1025834 D 360106 CDS YP_892189.1 118474321 4538852 complement(1026347..1027390) 1 NC_008599.1 identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520; L-asparaginase II 1027390 ansB 4538852 ansB Campylobacter fetus subsp. fetus 82-40 L-asparaginase II YP_892189.1 1026347 R 360106 CDS YP_892190.1 118475431 4539344 complement(1027500..1028807) 1 NC_008599.1 identified by match to protein family HMM PF02646; RmuC family protein 1028807 4539344 CFF8240_1026 Campylobacter fetus subsp. fetus 82-40 RmuC family protein YP_892190.1 1027500 R 360106 CDS YP_892191.1 118474211 4538528 1028926..1029846 1 NC_008599.1 identified by match to protein family HMM PF03547; putative permease 1029846 4538528 CFF8240_1027 Campylobacter fetus subsp. fetus 82-40 putative permease YP_892191.1 1028926 D 360106 CDS YP_892192.1 118475067 4538811 complement(1029878..1030186) 1 NC_008599.1 identified by match to protein family HMM PF03831; hypothetical protein 1030186 4538811 CFF8240_1028 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892192.1 1029878 R 360106 CDS YP_892193.1 118475098 4539434 1030305..1032842 1 NC_008599.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1032842 alaS 4539434 alaS Campylobacter fetus subsp. fetus 82-40 alanyl-tRNA synthetase YP_892193.1 1030305 D 360106 CDS YP_892194.1 118474411 4537795 1032839..1033333 1 NC_008599.1 hypothetical protein 1033333 4537795 CFF8240_1030 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892194.1 1032839 D 360106 CDS YP_892195.1 118474834 4538708 1033330..1033878 1 NC_008599.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1033878 4538708 CFF8240_1031 Campylobacter fetus subsp. fetus 82-40 Maf-like protein YP_892195.1 1033330 D 360106 CDS YP_892196.1 118474121 4538322 1033875..1035812 1 NC_008599.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A 1035812 4538322 CFF8240_1032 Campylobacter fetus subsp. fetus 82-40 penicillin-binding protein 1A YP_892196.1 1033875 D 360106 CDS YP_892197.1 118474942 4538905 complement(1035814..1036152) 1 NC_008599.1 hypothetical protein 1036152 4538905 CFF8240_1033 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892197.1 1035814 R 360106 CDS YP_892198.1 118474745 4538771 complement(1036260..1036616) 1 NC_008599.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1036616 rplS 4538771 rplS Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L19 YP_892198.1 1036260 R 360106 CDS YP_892199.1 118475610 4539506 complement(1036613..1037311) 1 NC_008599.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1037311 trmD 4539506 trmD Campylobacter fetus subsp. fetus 82-40 tRNA (guanine-N(1)-)-methyltransferase YP_892199.1 1036613 R 360106 CDS YP_892200.1 118474549 4538078 complement(1037315..1037845) 1 NC_008599.1 identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273; 16S rRNA processing protein RimM 1037845 rimM 4538078 rimM Campylobacter fetus subsp. fetus 82-40 16S rRNA processing protein RimM YP_892200.1 1037315 R 360106 CDS YP_892201.1 118474464 4537946 complement(1037835..1038080) 1 NC_008599.1 hypothetical protein 1038080 4537946 CFF8240_1037 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892201.1 1037835 R 360106 CDS YP_892202.1 118475183 4539363 complement(1038086..1038313) 1 NC_008599.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1038313 rpsP 4539363 rpsP Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S16 YP_892202.1 1038086 R 360106 CDS YP_892203.1 118474225 4538270 complement(1038384..1039730) 1 NC_008599.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1039730 ffh 4538270 ffh Campylobacter fetus subsp. fetus 82-40 signal recognition particle protein YP_892203.1 1038384 R 360106 CDS YP_892204.1 118474964 4538001 1040049..1041452 1 NC_008599.1 identified by match to protein family HMM PF00939; match to protein family HMM PF03600; nadc family protein 1041452 4538001 CFF8240_1040 Campylobacter fetus subsp. fetus 82-40 nadc family protein YP_892204.1 1040049 D 360106 CDS YP_892205.1 118474229 4538274 1041532..1043727 1 NC_008599.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1043727 4538274 CFF8240_1041 Campylobacter fetus subsp. fetus 82-40 methyl-accepting chemotaxis protein YP_892205.1 1041532 D 360106 CDS YP_892206.1 118474954 4537991 complement(1043785..1044549) 1 NC_008599.1 identified by match to protein family HMM PF00849; pseudouridine synthase 1044549 4537991 CFF8240_1042 Campylobacter fetus subsp. fetus 82-40 pseudouridine synthase YP_892206.1 1043785 R 360106 CDS YP_892207.1 118475256 4539106 complement(1044559..1045734) 1 NC_008599.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 1045734 4539106 CFF8240_1043 Campylobacter fetus subsp. fetus 82-40 3-deoxy-D-manno-octulosonic-acid transferase YP_892207.1 1044559 R 360106 CDS YP_892208.1 118474161 4539088 1045460..1045684 1 NC_008599.1 hypothetical protein 1045684 4539088 CFF8240_1044 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892208.1 1045460 D 360106 CDS YP_892209.1 118474688 4538382 complement(1045686..1046399) 1 NC_008599.1 identified by match to protein family HMM PF02591; hypothetical protein 1046399 4538382 CFF8240_1045 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892209.1 1045686 R 360106 CDS YP_892210.1 118475460 4539236 complement(1046417..1047139) 1 NC_008599.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein 1047139 4539236 CFF8240_1046 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892210.1 1046417 R 360106 CDS YP_892211.1 118474495 4537835 complement(1047136..1047993) 1 NC_008599.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1047993 glyQ 4537835 glyQ Campylobacter fetus subsp. fetus 82-40 glycyl-tRNA synthetase subunit alpha YP_892211.1 1047136 R 360106 CDS YP_892212.1 118475603 4539499 complement(1048040..1048510) 1 NC_008599.1 hypothetical protein 1048510 4539499 CFF8240_1048 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892212.1 1048040 R 360106 CDS YP_892213.1 118474793 4539180 complement(1048522..1049019) 1 NC_008599.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 1049019 purE 4539180 purE Campylobacter fetus subsp. fetus 82-40 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_892213.1 1048522 R 360106 CDS YP_892214.1 118475566 4538445 complement(1049160..1050416) 1 NC_008599.1 identified by match to protein family HMM PF01136; putative protease 1050416 4538445 CFF8240_1050 Campylobacter fetus subsp. fetus 82-40 putative protease YP_892214.1 1049160 R 360106 CDS YP_892215.1 118474166 4539093 complement(1050413..1051147) 1 NC_008599.1 hypothetical protein 1051147 4539093 CFF8240_1051 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892215.1 1050413 R 360106 CDS YP_892216.1 118475300 4539540 1052135..1052914 1 NC_008599.1 identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol phosphate phosphatase HisJ 1052914 4539540 CFF8240_1053 Campylobacter fetus subsp. fetus 82-40 histidinol phosphate phosphatase HisJ YP_892216.1 1052135 D 360106 CDS YP_892217.1 118475736 4538345 1053003..1054430 1 NC_008599.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 1054430 glnA 4538345 glnA Campylobacter fetus subsp. fetus 82-40 glutamine synthetase, type I YP_892217.1 1053003 D 360106 CDS YP_892218.1 118474126 4538327 complement(1054493..1054930) 1 NC_008599.1 hypothetical protein 1054930 4538327 CFF8240_1055 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892218.1 1054493 R 360106 CDS YP_892219.1 118475074 4538819 complement(1055075..1055593) 1 NC_008599.1 identified by match to protein family HMM PF00023; ankyrin repeat-containing protein 1055593 4538819 CFF8240_1056 Campylobacter fetus subsp. fetus 82-40 ankyrin repeat-containing protein YP_892219.1 1055075 R 360106 CDS YP_892220.1 118474375 4538919 complement(1055705..1057147) 1 NC_008599.1 identified by match to protein family HMM PF00199; catalase 1057147 4538919 CFF8240_1057 Campylobacter fetus subsp. fetus 82-40 catalase YP_892220.1 1055705 R 360106 CDS YP_892221.1 118474148 4538035 complement(1059657..1062053) 1 NC_008599.1 identified by match to protein family HMM PF00004; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La 1062053 lon 4538035 lon Campylobacter fetus subsp. fetus 82-40 ATP-dependent protease La YP_892221.1 1059657 R 360106 CDS YP_892222.1 118475750 4538183 complement(1062062..1062709) 1 NC_008599.1 hypothetical protein 1062709 4538183 CFF8240_1061 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892222.1 1062062 R 360106 CDS YP_892223.1 118474826 4538137 1062857..1063624 1 NC_008599.1 identified by match to protein family HMM PF01614; IclR family transcriptional regulator 1063624 4538137 CFF8240_1062 Campylobacter fetus subsp. fetus 82-40 IclR family transcriptional regulator YP_892223.1 1062857 D 360106 CDS YP_892224.1 118474907 4539062 1063851..1064738 1 NC_008599.1 identified by match to protein family HMM PF00701; dihydrodipicolinate synthase 1064738 4539062 CFF8240_1063 Campylobacter fetus subsp. fetus 82-40 dihydrodipicolinate synthase YP_892224.1 1063851 D 360106 CDS YP_892225.1 118474404 4539160 1064735..1066252 1 NC_008599.1 identified by match to protein family HMM PF04292; match to protein family HMM PF04295; altronate hydrolase 1066252 4539160 CFF8240_1064 Campylobacter fetus subsp. fetus 82-40 altronate hydrolase YP_892225.1 1064735 D 360106 CDS YP_892226.1 118475145 4539207 1066273..1067049 1 NC_008599.1 identified by match to protein family HMM PF00106; short chain dehydrogenase 1067049 4539207 CFF8240_1065 Campylobacter fetus subsp. fetus 82-40 short chain dehydrogenase YP_892226.1 1066273 D 360106 CDS YP_892227.1 118474165 4539092 1067060..1068259 1 NC_008599.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose:H+ symporter permease 1068259 fucP 4539092 fucP Campylobacter fetus subsp. fetus 82-40 L-fucose:H+ symporter permease YP_892227.1 1067060 D 360106 CDS YP_892228.1 118475006 4538046 1068285..1069388 1 NC_008599.1 identified by match to protein family HMM PF04909; match to protein family HMM PF05336; hypothetical protein 1069388 4538046 CFF8240_1067 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892228.1 1068285 D 360106 CDS YP_892229.1 118475511 4539485 1069498..1069884 1 NC_008599.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 1069884 4539485 CFF8240_1068 Campylobacter fetus subsp. fetus 82-40 flagellar assembly protein FliW YP_892229.1 1069498 D 360106 CDS YP_892230.1 118474778 4539417 1069912..1070586 1 NC_008599.1 identified by match to protein family HMM TIGR02532; prepilin-type N-terminal cleavage/methylation domain-containing protein 1070586 4539417 CFF8240_1069 Campylobacter fetus subsp. fetus 82-40 prepilin-type N-terminal cleavage/methylation domain-containing protein YP_892230.1 1069912 D 360106 CDS YP_892231.1 118475409 4538207 1070586..1071512 1 NC_008599.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prepilin-type N-terminal cleavage/methylation domain-containing protein 1071512 4538207 CFF8240_1070 Campylobacter fetus subsp. fetus 82-40 prepilin-type N-terminal cleavage/methylation domain-containing protein YP_892231.1 1070586 D 360106 CDS YP_892232.1 118474700 4538395 1071512..1071991 1 NC_008599.1 hypothetical protein 1071991 4538395 CFF8240_1071 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892232.1 1071512 D 360106 CDS YP_892233.1 118475196 4538241 1072035..1072565 1 NC_008599.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; sigma 54 modulation protein/ribosomal protein S30EA 1072565 4538241 CFF8240_1072 Campylobacter fetus subsp. fetus 82-40 sigma 54 modulation protein/ribosomal protein S30EA YP_892233.1 1072035 D 360106 CDS YP_892234.1 118474505 4539284 complement(1072620..1073894) 1 NC_008599.1 identified by match to protein family HMM PF05343; match to protein family HMM PF07687; aminoacyl-histidine dipeptidase 1073894 4539284 CFF8240_1073 Campylobacter fetus subsp. fetus 82-40 aminoacyl-histidine dipeptidase YP_892234.1 1072620 R 360106 CDS YP_892235.1 118475414 4538212 1073958..1074140 1 NC_008599.1 hypothetical protein 1074140 4538212 CFF8240_1074 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892235.1 1073958 D 360106 CDS YP_892236.1 118474841 4538715 1074124..1074972 1 NC_008599.1 identified by match to protein family HMM PF08003; hypothetical protein 1074972 4538715 CFF8240_1075 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892236.1 1074124 D 360106 CDS YP_892237.1 118474654 4539402 1074984..1075493 1 NC_008599.1 hypothetical protein 1075493 4539402 CFF8240_1077 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892237.1 1074984 D 360106 CDS YP_892238.1 118475392 4538868 complement(1075486..1076076) 1 NC_008599.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 1076076 4538868 CFF8240_1076 Campylobacter fetus subsp. fetus 82-40 metallo-beta-lactamase family protein YP_892238.1 1075486 R 360106 CDS YP_892239.1 118475615 4538280 1076167..1076913 1 NC_008599.1 identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; NAD+ synthetase 1076913 nadE 4538280 nadE Campylobacter fetus subsp. fetus 82-40 NAD+ synthetase YP_892239.1 1076167 D 360106 CDS YP_892240.1 118474790 4539431 1076927..1078060 1 NC_008599.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212; wbgx protein 1078060 4539431 CFF8240_1079 Campylobacter fetus subsp. fetus 82-40 wbgx protein YP_892240.1 1076927 D 360106 CDS YP_892241.1 118475332 4538613 1078053..1078997 1 NC_008599.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1078997 lpxK 4538613 lpxK Campylobacter fetus subsp. fetus 82-40 tetraacyldisaccharide 4'-kinase YP_892241.1 1078053 D 360106 CDS YP_892242.1 118474150 4538037 1079023..1079865 1 NC_008599.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 1079865 argB 4538037 argB Campylobacter fetus subsp. fetus 82-40 acetylglutamate kinase YP_892242.1 1079023 D 360106 CDS YP_892243.1 118474583 4538696 1079862..1081604 1 NC_008599.1 identified by match to protein family HMM PF00291; match to protein family HMM PF03091; match to protein family HMM TIGR00260; threonine synthase 1081604 4538696 CFF8240_1082 Campylobacter fetus subsp. fetus 82-40 threonine synthase YP_892243.1 1079862 D 360106 CDS YP_892244.1 118474289 4539470 1081601..1082323 1 NC_008599.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1082323 kdsB 4539470 kdsB Campylobacter fetus subsp. fetus 82-40 3-deoxy-manno-octulosonate cytidylyltransferase YP_892244.1 1081601 D 360106 CDS YP_892245.1 118474666 4539549 1082376..1082726 1 NC_008599.1 hypothetical protein 1082726 4539549 CFF8240_1084 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892245.1 1082376 D 360106 CDS YP_892246.1 118475203 4538248 1082891..1083850 1 NC_008599.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1083850 4538248 CFF8240_1085 Campylobacter fetus subsp. fetus 82-40 diguanylate cyclase YP_892246.1 1082891 D 360106 CDS YP_892247.1 118474623 4538601 1083885..1084850 1 NC_008599.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1084850 4538601 CFF8240_1086 Campylobacter fetus subsp. fetus 82-40 diguanylate cyclase YP_892247.1 1083885 D 360106 CDS YP_892248.1 118475366 4538474 complement(1084886..1086634) 1 NC_008599.1 identified by match to protein family HMM PF00085; match to protein family HMM PF02683; thiol:disulfide interchange protein DsbD 1086634 4538474 CFF8240_1087 Campylobacter fetus subsp. fetus 82-40 thiol:disulfide interchange protein DsbD YP_892248.1 1084886 R 360106 CDS YP_892249.1 118474779 4539418 1086768..1087598 1 NC_008599.1 identified by match to protein family HMM PF03976; PvdS 1087598 4539418 CFF8240_1088 Campylobacter fetus subsp. fetus 82-40 PvdS YP_892249.1 1086768 D 360106 CDS YP_892250.1 118474258 4537966 complement(1087751..1089631) 1 NC_008599.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1089631 dnaK 4537966 dnaK Campylobacter fetus subsp. fetus 82-40 molecular chaperone DnaK YP_892250.1 1087751 R 360106 CDS YP_892251.1 118475001 4539527 complement(1089670..1090191) 1 NC_008599.1 identified by match to protein family HMM PF01025; co-chaperone GrpE 1090191 grpE 4539527 grpE Campylobacter fetus subsp. fetus 82-40 co-chaperone GrpE YP_892251.1 1089670 R 360106 CDS YP_892252.1 118474389 4539145 complement(1090188..1090976) 1 NC_008599.1 Acts as a negative regulator of the grpE-dnaK-dnaJ and groELS class I heat shock operons by preventing heat-shock induction; heat-inducible transcription repressor 1090976 4539145 CFF8240_1091 Campylobacter fetus subsp. fetus 82-40 heat-inducible transcription repressor YP_892252.1 1090188 R 360106 CDS YP_892253.1 118475194 4539374 1091345..1091491 1 NC_008599.1 hypothetical protein 1091491 4539374 CFF8240_1092 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892253.1 1091345 D 360106 CDS YP_892254.1 118474519 4538006 complement(1091661..1091894) 1 NC_008599.1 hypothetical protein 1091894 4538006 CFF8240_1093 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892254.1 1091661 R 360106 CDS YP_892255.1 118474400 4539156 complement(1091891..1092907) 1 NC_008599.1 hypothetical protein 1092907 4539156 CFF8240_1094 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892255.1 1091891 R 360106 CDS YP_892256.1 118475158 4537771 complement(1092917..1095064) 1 NC_008599.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1095064 flhA 4537771 flhA Campylobacter fetus subsp. fetus 82-40 flagellar biosynthesis protein FlhA YP_892256.1 1092917 R 360106 CDS YP_892257.1 118475517 4539491 complement(1095091..1095495) 1 NC_008599.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; BadM/Rrf2 family transcriptional regulator 1095495 4539491 CFF8240_1096 Campylobacter fetus subsp. fetus 82-40 BadM/Rrf2 family transcriptional regulator YP_892257.1 1095091 R 360106 CDS YP_892258.1 118474530 4538018 1095667..1095939 1 NC_008599.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1095939 rpsO 4538018 rpsO Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S15 YP_892258.1 1095667 D 360106 CDS YP_892259.1 118474599 4538109 1095966..1096883 1 NC_008599.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I 1096883 4538109 CFF8240_1098 Campylobacter fetus subsp. fetus 82-40 para-aminobenzoate synthase component I YP_892259.1 1095966 D 360106 CDS YP_892260.1 118475768 4539030 1096849..1097436 1 NC_008599.1 hypothetical protein 1097436 4539030 CFF8240_1099 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892260.1 1096849 D 360106 CDS YP_892261.1 118474127 4538328 complement(1097484..1098119) 1 NC_008599.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase 1098119 4538328 CFF8240_1100 Campylobacter fetus subsp. fetus 82-40 HAD family hydrolase YP_892261.1 1097484 R 360106 CDS YP_892262.1 118475070 4538814 complement(1098103..1099104) 1 NC_008599.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1099104 4538814 CFF8240_1101 Campylobacter fetus subsp. fetus 82-40 ABC transporter ATP-binding protein YP_892262.1 1098103 R 360106 CDS YP_892263.1 118474975 4537856 complement(1099106..1099885) 1 NC_008599.1 identified by match to protein family HMM PF00528; ABC transporter permease 1099885 4537856 CFF8240_1102 Campylobacter fetus subsp. fetus 82-40 ABC transporter permease YP_892263.1 1099106 R 360106 CDS YP_892264.1 118474219 4538264 complement(1099882..1100724) 1 NC_008599.1 identified by match to protein family HMM PF00528; ABC transporter permease 1100724 4538264 CFF8240_1103 Campylobacter fetus subsp. fetus 82-40 ABC transporter permease YP_892264.1 1099882 R 360106 CDS YP_892265.1 118474395 4539151 complement(1100721..1101524) 1 NC_008599.1 hypothetical protein 1101524 4539151 CFF8240_1104 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892265.1 1100721 R 360106 CDS YP_892266.1 118475599 4539495 complement(1103178..1103471) 1 NC_008599.1 ABC transporter substrate-binding protein 1103471 4539495 CFF8240_1108 Campylobacter fetus subsp. fetus 82-40 ABC transporter substrate-binding protein YP_892266.1 1103178 R 360106 CDS YP_892267.1 118474816 4538127 complement(1103543..1104247) 1 NC_008599.1 identified by match to protein family HMM PF02390; match to protein family HMM TIGR00740; methyltransferase 1104247 4538127 CFF8240_1109 Campylobacter fetus subsp. fetus 82-40 methyltransferase YP_892267.1 1103543 R 360106 CDS YP_892268.1 118475078 4538163 complement(1104244..1105125) 1 NC_008599.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 1105125 ribF 4538163 ribF Campylobacter fetus subsp. fetus 82-40 bifunctional riboflavin kinase/FMN adenylyltransferase YP_892268.1 1104244 R 360106 CDS YP_892269.1 118475632 4538297 complement(1105094..1105795) 1 NC_008599.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J 1105795 rrmJ 4538297 rrmJ Campylobacter fetus subsp. fetus 82-40 ribosomal RNA large subunit methyltransferase J YP_892269.1 1105094 R 360106 CDS YP_892270.1 118474676 4539560 complement(1105792..1107729) 1 NC_008599.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 1107729 ligA 4539560 ligA Campylobacter fetus subsp. fetus 82-40 NAD-dependent DNA ligase LigA YP_892270.1 1105792 R 360106 CDS YP_892271.1 118475413 4538211 complement(1107730..1108872) 1 NC_008599.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 1108872 4538211 CFF8240_1113 Campylobacter fetus subsp. fetus 82-40 dihydropteroate synthase YP_892271.1 1107730 R 360106 CDS YP_892272.1 118474531 4538019 complement(1108869..1109486) 1 NC_008599.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1109486 4538019 CFF8240_1114 Campylobacter fetus subsp. fetus 82-40 DNA polymerase III subunit delta' YP_892272.1 1108869 R 360106 CDS YP_892273.1 118474073 4538736 complement(1109495..1110037) 1 NC_008599.1 hypothetical protein 1110037 4538736 CFF8240_1115 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892273.1 1109495 R 360106 CDS YP_892274.1 118475266 4539117 complement(1110037..1111251) 1 NC_008599.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1111251 4539117 CFF8240_1116 Campylobacter fetus subsp. fetus 82-40 aspartate kinase YP_892274.1 1110037 R 360106 CDS YP_892275.1 118474739 4538765 complement(1111251..1111721) 1 NC_008599.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1111721 4538765 CFF8240_1117 Campylobacter fetus subsp. fetus 82-40 dinucleoside polyphosphate hydrolase YP_892275.1 1111251 R 360106 CDS YP_892276.1 118475057 4538801 1111836..1112876 1 NC_008599.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1112876 4538801 CFF8240_1118 Campylobacter fetus subsp. fetus 82-40 coproporphyrinogen III oxidase YP_892276.1 1111836 D 360106 CDS YP_892277.1 118474576 4538689 1112932..1113387 1 NC_008599.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 1113387 4538689 CFF8240_1119 Campylobacter fetus subsp. fetus 82-40 sec-independent translocase YP_892277.1 1112932 D 360106 CDS YP_892278.1 118475065 4538809 1113387..1114142 1 NC_008599.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; twin arginine-targeting protein translocase TatC 1114142 tatC 4538809 tatC Campylobacter fetus subsp. fetus 82-40 twin arginine-targeting protein translocase TatC YP_892278.1 1113387 D 360106 CDS YP_892279.1 118475238 4538402 1114139..1115158 1 NC_008599.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1115158 queA 4538402 queA Campylobacter fetus subsp. fetus 82-40 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_892279.1 1114139 D 360106 CDS YP_892280.1 118474662 4539410 1115168..1116412 1 NC_008599.1 hypothetical protein 1116412 4539410 CFF8240_1123 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892280.1 1115168 D 360106 CDS YP_892281.1 118474156 4538043 complement(1116398..1117261) 1 NC_008599.1 identified by match to protein family HMM PF01189; NOL1\NOP2\sun family protein 1117261 4538043 CFF8240_1122 Campylobacter fetus subsp. fetus 82-40 NOL1\NOP2\sun family protein YP_892281.1 1116398 R 360106 CDS YP_892282.1 118475560 4538439 complement(1117269..1117643) 1 NC_008599.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1117643 4538439 CFF8240_1124 Campylobacter fetus subsp. fetus 82-40 Holliday junction resolvase-like protein YP_892282.1 1117269 R 360106 CDS YP_892283.1 118474360 4537926 complement(1117640..1118407) 1 NC_008599.1 identified by match to protein family HMM PF02481; SMF family protein 1118407 4537926 CFF8240_1125 Campylobacter fetus subsp. fetus 82-40 SMF family protein YP_892283.1 1117640 R 360106 CDS YP_892284.1 118475284 4539135 complement(1118391..1119554) 1 NC_008599.1 identified by match to protein family HMM PF04748; hypothetical protein 1119554 4539135 CFF8240_1126 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892284.1 1118391 R 360106 CDS YP_892285.1 118474220 4538265 complement(1119555..1120577) 1 NC_008599.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1120577 ilvC 4538265 ilvC Campylobacter fetus subsp. fetus 82-40 ketol-acid reductoisomerase YP_892285.1 1119555 R 360106 CDS YP_892286.1 118474249 4537882 1120724..1121536 1 NC_008599.1 putative signal transduction protein 1121536 4537882 CFF8240_1128 Campylobacter fetus subsp. fetus 82-40 putative signal transduction protein YP_892286.1 1120724 D 360106 CDS YP_892287.1 118474787 4539427 1121533..1123461 1 NC_008599.1 identified by match to protein family HMM PF00773; match to protein family HMM PF08206; ribonuclease R 1123461 4539427 CFF8240_1129 Campylobacter fetus subsp. fetus 82-40 ribonuclease R YP_892287.1 1121533 D 360106 CDS YP_892288.1 118475683 4538504 1123454..1124467 1 NC_008599.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1124467 4538504 CFF8240_1130 Campylobacter fetus subsp. fetus 82-40 DNA polymerase III subunit delta YP_892288.1 1123454 D 360106 CDS YP_892289.1 118474517 4538004 1124540..1124926 1 NC_008599.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1124926 rpsF 4538004 rpsF Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S6 YP_892289.1 1124540 D 360106 CDS YP_892290.1 118474764 4538831 1124948..1125577 1 NC_008599.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1125577 4538831 CFF8240_1132 Campylobacter fetus subsp. fetus 82-40 single-stranded DNA-binding protein YP_892290.1 1124948 D 360106 CDS YP_892291.1 118475552 4538158 1125590..1125850 1 NC_008599.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1125850 rpsR 4538158 rpsR Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S18 YP_892291.1 1125590 D 360106 CDS YP_892292.1 118474865 4538315 complement(1125882..1126970) 1 NC_008599.1 identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349; chaperone protein DnaJ 1126970 dnaJ 4538315 dnaJ Campylobacter fetus subsp. fetus 82-40 chaperone protein DnaJ YP_892292.1 1125882 R 360106 CDS YP_892293.1 118475433 4539346 1127165..1127836 1 NC_008599.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulatory protein BaeR 1127836 4539346 CFF8240_1135 Campylobacter fetus subsp. fetus 82-40 transcriptional regulatory protein BaeR YP_892293.1 1127165 D 360106 CDS YP_892294.1 118474332 4538554 1127833..1129092 1 NC_008599.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; two-component sensor 1129092 4538554 CFF8240_1136 Campylobacter fetus subsp. fetus 82-40 two-component sensor YP_892294.1 1127833 D 360106 CDS YP_892295.1 118475618 4538283 1129073..1129642 1 NC_008599.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1129642 recR 4538283 recR Campylobacter fetus subsp. fetus 82-40 recombination protein RecR YP_892295.1 1129073 D 360106 CDS YP_892296.1 118475038 4538434 complement(1129658..1130443) 1 NC_008599.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 1130443 aroE 4538434 aroE Campylobacter fetus subsp. fetus 82-40 shikimate 5-dehydrogenase YP_892296.1 1129658 R 360106 CDS YP_892297.1 118474100 4537913 complement(1130443..1131210) 1 NC_008599.1 identified by match to protein family HMM PF05036; hypothetical protein 1131210 4537913 CFF8240_1139 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892297.1 1130443 R 360106 CDS YP_892298.1 118474579 4538692 complement(1131221..1131763) 1 NC_008599.1 hypothetical protein 1131763 4538692 CFF8240_1140 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892298.1 1131221 R 360106 CDS YP_892299.1 118475761 4538194 complement(1131763..1133007) 1 NC_008599.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1133007 glyA 4538194 glyA Campylobacter fetus subsp. fetus 82-40 serine hydroxymethyltransferase YP_892299.1 1131763 R 360106 CDS YP_892300.1 118475508 4539481 complement(1133004..1134518) 1 NC_008599.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1134518 lysS 4539481 lysS Campylobacter fetus subsp. fetus 82-40 lysyl-tRNA synthetase YP_892300.1 1133004 R 360106 CDS YP_892301.1 118474524 4538012 complement(1134529..1134993) 1 NC_008599.1 identified by match to protein family HMM PF01475; ferric uptake regulation protein 1134993 4538012 CFF8240_1143 Campylobacter fetus subsp. fetus 82-40 ferric uptake regulation protein YP_892301.1 1134529 R 360106 CDS YP_892302.1 118474175 4539102 complement(1134997..1135572) 1 NC_008599.1 identified by match to protein family HMM PF02674; CvpA family protein 1135572 cvpA 4539102 cvpA Campylobacter fetus subsp. fetus 82-40 CvpA family protein YP_892302.1 1134997 R 360106 CDS YP_892303.1 118475200 4538245 complement(1135572..1136633) 1 NC_008599.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilT 1136633 pilT 4538245 pilT Campylobacter fetus subsp. fetus 82-40 twitching motility protein PilT YP_892303.1 1135572 R 360106 CDS YP_892304.1 118474805 4539192 complement(1136637..1136924) 1 NC_008599.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1136924 gatC 4539192 gatC Campylobacter fetus subsp. fetus 82-40 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_892304.1 1136637 R 360106 CDS YP_892305.1 118474911 4538933 1137146..1137706 1 NC_008599.1 hypothetical protein 1137706 4538933 CFF8240_1147 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892305.1 1137146 D 360106 CDS YP_892306.1 118474142 4538028 1137709..1138716 1 NC_008599.1 hypothetical protein 1138716 4538028 CFF8240_1148 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892306.1 1137709 D 360106 CDS YP_892307.1 118475735 4538344 1138723..1139049 1 NC_008599.1 hypothetical protein 1139049 4538344 CFF8240_1149 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892307.1 1138723 D 360106 CDS YP_892308.1 118474364 4537930 1139036..1139668 1 NC_008599.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 1139668 4537930 CFF8240_1150 Campylobacter fetus subsp. fetus 82-40 pantothenate kinase YP_892308.1 1139036 D 360106 CDS YP_892309.1 118475111 4539447 1139656..1140267 1 NC_008599.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 1140267 hisG 4539447 hisG Campylobacter fetus subsp. fetus 82-40 ATP phosphoribosyltransferase catalytic subunit YP_892309.1 1139656 D 360106 CDS YP_892310.1 118475228 4539174 1140276..1141580 1 NC_008599.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 1141580 brnQ 4539174 brnQ Campylobacter fetus subsp. fetus 82-40 branched-chain amino acid transport system II carrier protein YP_892310.1 1140276 D 360106 CDS YP_892311.1 118475350 4538457 1141577..1142686 1 NC_008599.1 identified by match to protein family HMM PF00149; cytoplasmic membrane protein 1142686 4538457 CFF8240_1153 Campylobacter fetus subsp. fetus 82-40 cytoplasmic membrane protein YP_892311.1 1141577 D 360106 CDS YP_892312.1 118474973 4537854 1142683..1143474 1 NC_008599.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 1143474 psd 4537854 psd Campylobacter fetus subsp. fetus 82-40 phosphatidylserine decarboxylase YP_892312.1 1142683 D 360106 CDS YP_892313.1 118474433 4538978 complement(1143513..1143848) 1 NC_008599.1 NapD protein 1143848 4538978 CFF8240_1155 Campylobacter fetus subsp. fetus 82-40 NapD protein YP_892313.1 1143513 R 360106 CDS YP_892314.1 118475493 4538372 complement(1143845..1144744) 1 NC_008599.1 hypothetical protein 1144744 4538372 CFF8240_1156 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892314.1 1143845 R 360106 CDS YP_892315.1 118474508 4539287 complement(1144741..1145211) 1 NC_008599.1 identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin 1145211 4539287 CFF8240_1157 Campylobacter fetus subsp. fetus 82-40 4Fe-4S ferredoxin YP_892315.1 1144741 R 360106 CDS YP_892316.1 118475674 4538494 complement(1145214..1145747) 1 NC_008599.1 identified by match to protein family HMM PF03892; periplasmic nitrate reductase, diheme cytochrome c subunit 1145747 napB 4538494 napB Campylobacter fetus subsp. fetus 82-40 periplasmic nitrate reductase, diheme cytochrome c subunit YP_892316.1 1145214 R 360106 CDS YP_892317.1 118474704 4539259 complement(1145744..1146529) 1 NC_008599.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 1146529 napH 4539259 napH Campylobacter fetus subsp. fetus 82-40 quinol dehydrogenase membrane component YP_892317.1 1145744 R 360106 CDS YP_892318.1 118474204 4538521 complement(1146526..1147278) 1 NC_008599.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 1147278 napG 4538521 napG Campylobacter fetus subsp. fetus 82-40 quinol dehydrogenase periplasmic component YP_892318.1 1146526 R 360106 CDS YP_892319.1 118474903 4539058 complement(1147281..1150058) 1 NC_008599.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 1150058 napA 4539058 napA Campylobacter fetus subsp. fetus 82-40 nitrate reductase catalytic subunit YP_892319.1 1147281 R 360106 CDS YP_892320.1 118474262 4537971 complement(1150458..1151120) 1 NC_008599.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 1151120 4537971 CFF8240_1162 Campylobacter fetus subsp. fetus 82-40 amino acid ABC transporter permease YP_892320.1 1150458 R 360106 CDS YP_892321.1 118475005 4538045 complement(1151123..1151812) 1 NC_008599.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease 1151812 4538045 CFF8240_1163 Campylobacter fetus subsp. fetus 82-40 amino acid ABC transporter permease YP_892321.1 1151123 R 360106 CDS YP_892322.1 118475479 4538589 complement(1151812..1152606) 1 NC_008599.1 PEB1; bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein 1152606 4538589 CFF8240_1164 Campylobacter fetus subsp. fetus 82-40 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein YP_892322.1 1151812 R 360106 CDS YP_892323.1 118474518 4538005 complement(1152622..1153350) 1 NC_008599.1 identified by match to protein family HMM PF00005; glutamine transport ATP-binding protein GlnQ 1153350 4538005 CFF8240_1165 Campylobacter fetus subsp. fetus 82-40 glutamine transport ATP-binding protein GlnQ YP_892323.1 1152622 R 360106 CDS YP_892324.1 118475641 4538674 complement(1153562..1154665) 1 NC_008599.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1154665 ychF 4538674 ychF Campylobacter fetus subsp. fetus 82-40 GTP-dependent nucleic acid-binding protein EngD YP_892324.1 1153562 R 360106 CDS YP_892325.1 118474736 4538549 complement(1154665..1156137) 1 NC_008599.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1156137 4538549 CFF8240_1167 Campylobacter fetus subsp. fetus 82-40 leucyl aminopeptidase YP_892325.1 1154665 R 360106 CDS YP_892326.1 118474234 4538279 complement(1156118..1156729) 1 NC_008599.1 DedA family protein 1156729 4538279 CFF8240_1168 Campylobacter fetus subsp. fetus 82-40 DedA family protein YP_892326.1 1156118 R 360106 CDS YP_892327.1 118474996 4539521 complement(1156732..1157280) 1 NC_008599.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1157280 apt 4539521 apt Campylobacter fetus subsp. fetus 82-40 adenine phosphoribosyltransferase YP_892327.1 1156732 R 360106 CDS YP_892328.1 118474885 4538644 complement(1157294..1157626) 1 NC_008599.1 hypothetical protein 1157626 4538644 CFF8240_1170 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892328.1 1157294 R 360106 CDS YP_892329.1 118475668 4538964 complement(1157620..1158066) 1 NC_008599.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase B 1158066 rpiB 4538964 rpiB Campylobacter fetus subsp. fetus 82-40 ribose 5-phosphate isomerase B YP_892329.1 1157620 R 360106 CDS YP_892330.1 118474334 4538556 complement(1158121..1158765) 1 NC_008599.1 identified by match to protein family HMM PF02163; peptidase M50 1158765 4538556 CFF8240_1172 Campylobacter fetus subsp. fetus 82-40 peptidase M50 YP_892330.1 1158121 R 360106 CDS YP_892331.1 118475055 4538799 complement(1158758..1159615) 1 NC_008599.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 1159615 lepB 4538799 lepB Campylobacter fetus subsp. fetus 82-40 signal peptidase I YP_892331.1 1158758 R 360106 CDS YP_892332.1 118475042 4538786 complement(1159612..1160463) 1 NC_008599.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1160463 4538786 CFF8240_1174 Campylobacter fetus subsp. fetus 82-40 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_892332.1 1159612 R 360106 CDS YP_892333.1 118474703 4539258 1160542..1160898 1 NC_008599.1 hypothetical protein 1160898 4539258 CFF8240_1175 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892333.1 1160542 D 360106 CDS YP_892334.1 118475329 4538610 1160895..1162166 1 NC_008599.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1162166 hemL 4538610 hemL Campylobacter fetus subsp. fetus 82-40 glutamate-1-semialdehyde aminotransferase YP_892334.1 1160895 D 360106 CDS YP_892335.1 118474293 4538991 1162163..1162450 1 NC_008599.1 hypothetical protein 1162450 4538991 CFF8240_1177 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892335.1 1162163 D 360106 CDS YP_892336.1 118474243 4537876 1162440..1162895 1 NC_008599.1 hypothetical protein 1162895 4537876 CFF8240_1178 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892336.1 1162440 D 360106 CDS YP_892337.1 118475137 4539199 1162885..1164108 1 NC_008599.1 identified by match to protein family HMM PF07690; transmembrane transport protein 1164108 4539199 CFF8240_1179 Campylobacter fetus subsp. fetus 82-40 transmembrane transport protein YP_892337.1 1162885 D 360106 CDS YP_892338.1 118474427 4538972 1164089..1165936 1 NC_008599.1 hypothetical protein 1165936 4538972 CFF8240_1180 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892338.1 1164089 D 360106 CDS YP_892339.1 118474492 4537832 1165938..1166201 1 NC_008599.1 identified by match to protein family HMM TIGR00789; FlhB domain-containing protein 1166201 4537832 CFF8240_1181 Campylobacter fetus subsp. fetus 82-40 FlhB domain-containing protein YP_892339.1 1165938 D 360106 CDS YP_892340.1 118474494 4537834 complement(1166203..1168011) 1 NC_008599.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2 1168011 4537834 CFF8240_1182 Campylobacter fetus subsp. fetus 82-40 penicillin-binding protein 2 YP_892340.1 1166203 R 360106 CDS YP_892341.1 118475507 4539480 complement(1168008..1168442) 1 NC_008599.1 hypothetical protein 1168442 4539480 CFF8240_1183 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892341.1 1168008 R 360106 CDS YP_892342.1 118475358 4538465 complement(1168463..1168921) 1 NC_008599.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate; acetyltransferase 1168921 4538465 CFF8240_1184 Campylobacter fetus subsp. fetus 82-40 acetyltransferase YP_892342.1 1168463 R 360106 CDS YP_892343.1 118475226 4539172 complement(1168928..1169524) 1 NC_008599.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1169524 engB 4539172 engB Campylobacter fetus subsp. fetus 82-40 ribosome biogenesis GTP-binding protein YsxC YP_892343.1 1168928 R 360106 CDS YP_892344.1 118474366 4537932 complement(1169528..1169995) 1 NC_008599.1 identified by match to protein family HMM PF03968; OstA family protein 1169995 4537932 CFF8240_1186 Campylobacter fetus subsp. fetus 82-40 OstA family protein YP_892344.1 1169528 R 360106 CDS YP_892345.1 118475292 4539531 complement(1169977..1170474) 1 NC_008599.1 hypothetical protein 1170474 4539531 CFF8240_1187 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892345.1 1169977 R 360106 CDS YP_892346.1 118475412 4538210 complement(1170489..1170977) 1 NC_008599.1 identified by match to protein family HMM TIGR01670; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 1170977 4538210 CFF8240_1188 Campylobacter fetus subsp. fetus 82-40 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_892346.1 1170489 R 360106 CDS YP_892347.1 118475282 4539133 complement(1170974..1171546) 1 NC_008599.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 1171546 hisB 4539133 hisB Campylobacter fetus subsp. fetus 82-40 imidazoleglycerol-phosphate dehydratase YP_892347.1 1170974 R 360106 CDS YP_892348.1 118475642 4538675 complement(1171547..1172266) 1 NC_008599.1 identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein a rlpa 1172266 4538675 CFF8240_1190 Campylobacter fetus subsp. fetus 82-40 rare lipoprotein a rlpa YP_892348.1 1171547 R 360106 CDS YP_892349.1 118474637 4539304 complement(1172313..1173527) 1 NC_008599.1 identified by match to protein family HMM PF01464; match to protein family HMM PF01476; regulatory protein dnir 1173527 4539304 CFF8240_1191 Campylobacter fetus subsp. fetus 82-40 regulatory protein dnir YP_892349.1 1172313 R 360106 CDS YP_892350.1 118474075 4538738 complement(1173536..1174300) 1 NC_008599.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; protein YabD 1174300 4538738 CFF8240_1192 Campylobacter fetus subsp. fetus 82-40 protein YabD YP_892350.1 1173536 R 360106 CDS YP_892351.1 118475025 4538421 complement(1174297..1175544) 1 NC_008599.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1175544 4538421 CFF8240_1193 Campylobacter fetus subsp. fetus 82-40 diguanylate cyclase YP_892351.1 1174297 R 360106 CDS YP_892352.1 118475107 4539443 complement(1175610..1177133) 1 NC_008599.1 identified by match to protein family HMM PF02463; DNA repair protein RecN 1177133 4539443 CFF8240_1194 Campylobacter fetus subsp. fetus 82-40 DNA repair protein RecN YP_892352.1 1175610 R 360106 CDS YP_892353.1 118474358 4537924 complement(1177123..1177986) 1 NC_008599.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1177986 pnk 4537924 pnk Campylobacter fetus subsp. fetus 82-40 inorganic polyphosphate/ATP-NAD kinase YP_892353.1 1177123 R 360106 CDS YP_892354.1 118474727 4538540 1178165..1179919 1 NC_008599.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1179919 aspS 4538540 aspS Campylobacter fetus subsp. fetus 82-40 aspartyl-tRNA synthetase YP_892354.1 1178165 D 360106 CDS YP_892355.1 118474132 4538333 1179916..1180491 1 NC_008599.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1180491 adk 4538333 adk Campylobacter fetus subsp. fetus 82-40 adenylate kinase YP_892355.1 1179916 D 360106 CDS YP_892356.1 118475514 4539488 1180496..1181014 1 NC_008599.1 identified by match to protein family HMM PF00719; inorganic pyrophosphatase 1181014 ppa 4539488 ppa Campylobacter fetus subsp. fetus 82-40 inorganic pyrophosphatase YP_892356.1 1180496 D 360106 CDS YP_892357.1 118474777 4539416 complement(1181076..1181519) 1 NC_008599.1 acetyltransferase 1181519 4539416 CFF8240_1199 Campylobacter fetus subsp. fetus 82-40 acetyltransferase YP_892357.1 1181076 R 360106 CDS YP_892358.1 118475264 4539114 complement(1181568..1182101) 1 NC_008599.1 hypothetical protein 1182101 4539114 CFF8240_1200 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892358.1 1181568 R 360106 CDS YP_892359.1 118474487 4537827 complement(1182189..1182962) 1 NC_008599.1 identified by match to protein family HMM PF00005; iron chelate ABC transporter ATP-binding protein 1182962 4537827 CFF8240_1201 Campylobacter fetus subsp. fetus 82-40 iron chelate ABC transporter ATP-binding protein YP_892359.1 1182189 R 360106 CDS YP_892360.1 118474361 4537927 complement(1182953..1183933) 1 NC_008599.1 identified by match to protein family HMM PF01032; ABC transporter permease 1183933 4537927 CFF8240_1202 Campylobacter fetus subsp. fetus 82-40 ABC transporter permease YP_892360.1 1182953 R 360106 CDS YP_892361.1 118475175 4537788 complement(1183914..1184957) 1 NC_008599.1 identified by match to protein family HMM PF01497; putative periplasmic iron siderophore binding protein of ABC transporter 1184957 4537788 CFF8240_1203 Campylobacter fetus subsp. fetus 82-40 putative periplasmic iron siderophore binding protein of ABC transporter YP_892361.1 1183914 R 360106 CDS YP_892362.1 118475573 4538452 complement(1184954..1185574) 1 NC_008599.1 hypothetical protein 1185574 4538452 CFF8240_1204 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892362.1 1184954 R 360106 CDS YP_892363.1 118475015 4538055 complement(1185567..1186166) 1 NC_008599.1 hypothetical protein 1186166 4538055 CFF8240_1205 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892363.1 1185567 R 360106 CDS YP_892364.1 118474089 4537902 complement(1186175..1188241) 1 NC_008599.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; putative TonB-dependent receptor 1188241 4537902 CFF8240_1206 Campylobacter fetus subsp. fetus 82-40 putative TonB-dependent receptor YP_892364.1 1186175 R 360106 CDS YP_892365.1 118475050 4538794 1188343..1189266 1 NC_008599.1 identified by match to protein family HMM PF00165; transcriptional regulatory protein 1189266 4538794 CFF8240_1207 Campylobacter fetus subsp. fetus 82-40 transcriptional regulatory protein YP_892365.1 1188343 D 360106 CDS YP_892366.1 118475217 4539163 complement(1189313..1191151) 1 NC_008599.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 1191151 mnmC 4539163 mnmC Campylobacter fetus subsp. fetus 82-40 5-methylaminomethyl-2-thiouridine methyltransferase YP_892366.1 1189313 R 360106 CDS YP_892367.1 118474687 4538381 complement(1191148..1192557) 1 NC_008599.1 identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 1192557 4538381 CFF8240_1209 Campylobacter fetus subsp. fetus 82-40 N-acetylmuramoyl-L-alanine amidase YP_892367.1 1191148 R 360106 CDS YP_892368.1 118475383 4538491 complement(1192751..1193863) 1 NC_008599.1 identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase 1193863 4538491 CFF8240_1210 Campylobacter fetus subsp. fetus 82-40 2-nitropropane dioxygenase YP_892368.1 1192751 R 360106 CDS YP_892369.1 118474811 4539198 complement(1193863..1195071) 1 NC_008599.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1195071 tyrS 4539198 tyrS Campylobacter fetus subsp. fetus 82-40 tyrosyl-tRNA synthetase YP_892369.1 1193863 R 360106 CDS YP_892370.1 118474726 4538539 complement(1195073..1197271) 1 NC_008599.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 1197271 4538539 CFF8240_1212 Campylobacter fetus subsp. fetus 82-40 GTP pyrophosphokinase YP_892370.1 1195073 R 360106 CDS YP_892371.1 118475016 4538056 complement(1197255..1197476) 1 NC_008599.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1197476 rpoZ 4538056 rpoZ Campylobacter fetus subsp. fetus 82-40 DNA-directed RNA polymerase subunit omega YP_892371.1 1197255 R 360106 CDS YP_892372.1 118475164 4537777 complement(1197489..1198205) 1 NC_008599.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1198205 pyrH 4537777 pyrH Campylobacter fetus subsp. fetus 82-40 uridylate kinase YP_892372.1 1197489 R 360106 CDS YP_892373.1 118474112 4538661 complement(1198261..1199427) 1 NC_008599.1 identified by match to protein family HMM PF01551; M24/M37 family peptidase 1199427 4538661 CFF8240_1215 Campylobacter fetus subsp. fetus 82-40 M24/M37 family peptidase YP_892373.1 1198261 R 360106 CDS YP_892374.1 118475444 4539219 complement(1199463..1200200) 1 NC_008599.1 cell division protein FtsX 1200200 4539219 CFF8240_1216 Campylobacter fetus subsp. fetus 82-40 cell division protein FtsX YP_892374.1 1199463 R 360106 CDS YP_892375.1 118474314 4538845 complement(1200262..1200933) 1 NC_008599.1 identified by match to protein family HMM PF00005; lipoprotein releasing system ATP-binding protein LolD 1200933 4538845 CFF8240_1217 Campylobacter fetus subsp. fetus 82-40 lipoprotein releasing system ATP-binding protein LolD YP_892375.1 1200262 R 360106 CDS YP_892376.1 118475337 4538618 complement(1200918..1202105) 1 NC_008599.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1202105 trmB 4538618 trmB Campylobacter fetus subsp. fetus 82-40 tRNA (guanine-N(7)-)-methyltransferase YP_892376.1 1200918 R 360106 CDS YP_892377.1 118474336 4538558 complement(1202105..1203271) 1 NC_008599.1 identified by match to protein family HMM PF00041; fibronectin type III domain-containing protein 1203271 4538558 CFF8240_1219 Campylobacter fetus subsp. fetus 82-40 fibronectin type III domain-containing protein YP_892377.1 1202105 R 360106 CDS YP_892378.1 118475501 4539474 complement(1203252..1204223) 1 NC_008599.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal pseudouridine synthase 1204223 4539474 CFF8240_1220 Campylobacter fetus subsp. fetus 82-40 ribosomal pseudouridine synthase YP_892378.1 1203252 R 360106 CDS YP_892379.1 118475772 4539034 1204275..1205381 1 NC_008599.1 identified by match to protein family HMM PF01098; cell cycle protein 1205381 4539034 CFF8240_1222 Campylobacter fetus subsp. fetus 82-40 cell cycle protein YP_892379.1 1204275 D 360106 CDS YP_892380.1 118474741 4538767 complement(1205378..1205935) 1 NC_008599.1 identified by match to protein family HMM PF02630; SCO1/SenC family protein 1205935 4538767 CFF8240_1221 Campylobacter fetus subsp. fetus 82-40 SCO1/SenC family protein YP_892380.1 1205378 R 360106 CDS YP_892381.1 118474910 4538932 1206098..1207243 1 NC_008599.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1207243 4538932 CFF8240_1223 Campylobacter fetus subsp. fetus 82-40 methyl-accepting chemotaxis protein YP_892381.1 1206098 D 360106 CDS YP_892382.1 118475535 4538238 complement(1207373..1207705) 1 NC_008599.1 identified by match to protein family HMM PF01638; transcriptional regulator 1207705 4538238 CFF8240_1224 Campylobacter fetus subsp. fetus 82-40 transcriptional regulator YP_892382.1 1207373 R 360106 CDS YP_892383.1 118475271 4539122 1207945..1208580 1 NC_008599.1 hypothetical protein 1208580 4539122 CFF8240_1225 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892383.1 1207945 D 360106 CDS YP_892384.1 118475063 4538807 complement(1208684..1209667) 1 NC_008599.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation diffusion facilitator family transporter 1209667 4538807 CFF8240_1226 Campylobacter fetus subsp. fetus 82-40 cation diffusion facilitator family transporter YP_892384.1 1208684 R 360106 CDS YP_892385.1 118474095 4537908 complement(1209841..1211502) 1 NC_008599.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1211502 4537908 CFF8240_1227 Campylobacter fetus subsp. fetus 82-40 methyl-accepting chemotaxis protein YP_892385.1 1209841 R 360106 CDS YP_892386.1 118475729 4538763 complement(1212076..1213590) 1 NC_008599.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; sodium/proline symporter 1213590 putP 4538763 putP Campylobacter fetus subsp. fetus 82-40 sodium/proline symporter YP_892386.1 1212076 R 360106 CDS YP_892387.1 118474738 4538764 1213699..1214418 1 NC_008599.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine amino acid ABC transporter permease 1214418 4538764 CFF8240_1230 Campylobacter fetus subsp. fetus 82-40 His/Glu/Gln/Arg/opine amino acid ABC transporter permease YP_892387.1 1213699 D 360106 CDS YP_892388.1 118474598 4538108 1214411..1215139 1 NC_008599.1 identified by match to protein family HMM PF00005; amino acid ABC transporter, ATP-binding protein 1215139 4538108 CFF8240_1231 Campylobacter fetus subsp. fetus 82-40 amino acid ABC transporter, ATP-binding protein YP_892388.1 1214411 D 360106 CDS YP_892389.1 118475359 4538466 1215155..1215883 1 NC_008599.1 identified by match to protein family HMM PF00497; arginine-binding periplasmic protein 1 1215883 4538466 CFF8240_1232 Campylobacter fetus subsp. fetus 82-40 arginine-binding periplasmic protein 1 YP_892389.1 1215155 D 360106 CDS YP_892390.1 118475084 4538169 1215911..1216636 1 NC_008599.1 identified by match to protein family HMM PF00497; CjaC 1216636 4538169 CFF8240_1233 Campylobacter fetus subsp. fetus 82-40 CjaC YP_892390.1 1215911 D 360106 CDS YP_892391.1 118474330 4538552 1216674..1217282 1 NC_008599.1 identified by match to protein family HMM PF02581; thiamine-phosphate pyrophosphorylase 1217282 4538552 CFF8240_1234 Campylobacter fetus subsp. fetus 82-40 thiamine-phosphate pyrophosphorylase YP_892391.1 1216674 D 360106 CDS YP_892392.1 118474419 4537803 1217283..1218059 1 NC_008599.1 identified by match to protein family HMM PF02673; match to protein family HMM TIGR00753; undecaprenol kinase 1218059 4537803 CFF8240_1235 Campylobacter fetus subsp. fetus 82-40 undecaprenol kinase YP_892392.1 1217283 D 360106 CDS YP_892393.1 118474484 4537824 complement(1218139..1219419) 1 NC_008599.1 identified by match to protein family HMM PF00266; putative aminotransferase 1219419 4537824 CFF8240_1236 Campylobacter fetus subsp. fetus 82-40 putative aminotransferase YP_892393.1 1218139 R 360106 CDS YP_892394.1 118474398 4539154 1219590..1220375 1 NC_008599.1 identified by match to protein family HMM PF03008; ATPase 1220375 4539154 CFF8240_1237 Campylobacter fetus subsp. fetus 82-40 ATPase YP_892394.1 1219590 D 360106 CDS YP_892395.1 118475077 4538822 1220368..1221369 1 NC_008599.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1221369 4538822 CFF8240_1239 Campylobacter fetus subsp. fetus 82-40 sensor histidine kinase YP_892395.1 1220368 D 360106 CDS YP_892396.1 118475097 4538182 complement(1221356..1225351) 1 NC_008599.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1225351 dnaE 4538182 dnaE Campylobacter fetus subsp. fetus 82-40 DNA polymerase III subunit alpha YP_892396.1 1221356 R 360106 CDS YP_892397.1 118474079 4538742 complement(1225456..1225704) 1 NC_008599.1 identified by match to protein family HMM PF00076; RNA-binding region RNP-1 1225704 4538742 CFF8240_1240 Campylobacter fetus subsp. fetus 82-40 RNA-binding region RNP-1 YP_892397.1 1225456 R 360106 CDS YP_892398.1 118475684 4538505 1226089..1229589 1 NC_008599.1 identified by match to protein family HMM PF00171; match to protein family HMM PF01619; proline/pyrroline-5-carboxylate dehydrogenase 1229589 4538505 CFF8240_1241 Campylobacter fetus subsp. fetus 82-40 proline/pyrroline-5-carboxylate dehydrogenase YP_892398.1 1226089 D 360106 CDS YP_892399.1 118474709 4539264 1229593..1231068 1 NC_008599.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; sodium/proline symporter 1231068 putP 4539264 putP Campylobacter fetus subsp. fetus 82-40 sodium/proline symporter YP_892399.1 1229593 D 360106 CDS YP_892400.1 118474526 4538014 1231318..1231818 1 NC_008599.1 cytochrome c-type protein NrfH 1231818 4538014 CFF8240_1243 Campylobacter fetus subsp. fetus 82-40 cytochrome c-type protein NrfH YP_892400.1 1231318 D 360106 CDS YP_892401.1 118474353 4537919 1231834..1233657 1 NC_008599.1 identified by match to protein family HMM PF02335; nitrite reductase 1233657 nrfA 4537919 nrfA Campylobacter fetus subsp. fetus 82-40 nitrite reductase YP_892401.1 1231834 D 360106 CDS YP_892402.1 118474065 4538728 complement(1233769..1234308) 1 NC_008599.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein 1234308 thiJ 4538728 thiJ Campylobacter fetus subsp. fetus 82-40 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein YP_892402.1 1233769 R 360106 CDS YP_892403.1 118474233 4538278 complement(1235101..1235670) 1 NC_008599.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1235670 efp 4538278 efp Campylobacter fetus subsp. fetus 82-40 elongation factor P YP_892403.1 1235101 R 360106 CDS YP_892404.1 118474999 4539525 complement(1235685..1237262) 1 NC_008599.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1237262 serA 4539525 serA Campylobacter fetus subsp. fetus 82-40 D-3-phosphoglycerate dehydrogenase YP_892404.1 1235685 R 360106 CDS YP_892405.1 118475379 4538487 complement(1237266..1237739) 1 NC_008599.1 hypothetical protein 1237739 4538487 CFF8240_1249 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892405.1 1237266 R 360106 CDS YP_892406.1 118475172 4537785 complement(1237747..1239420) 1 NC_008599.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1239420 rpsA 4537785 rpsA Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S1 YP_892406.1 1237747 R 360106 CDS YP_892407.1 118474670 4539553 complement(1239521..1240360) 1 NC_008599.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1240360 ispH 4539553 ispH Campylobacter fetus subsp. fetus 82-40 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_892407.1 1239521 R 360106 CDS YP_892408.1 118475346 4538627 complement(1240350..1241627) 1 NC_008599.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1241627 aroA 4538627 aroA Campylobacter fetus subsp. fetus 82-40 3-phosphoshikimate 1-carboxyvinyltransferase YP_892408.1 1240350 R 360106 CDS YP_892409.1 118474852 4538301 complement(1241624..1243960) 1 NC_008599.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1243960 pheT 4538301 pheT Campylobacter fetus subsp. fetus 82-40 phenylalanyl-tRNA synthetase subunit beta YP_892409.1 1241624 R 360106 CDS YP_892410.1 118475664 4538960 complement(1243957..1244949) 1 NC_008599.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1244949 pheS 4538960 pheS Campylobacter fetus subsp. fetus 82-40 phenylalanyl-tRNA synthetase subunit alpha YP_892410.1 1243957 R 360106 CDS YP_892411.1 118474817 4538128 1245077..1245436 1 NC_008599.1 identified by match to protein family HMM PF01230; HIT family protein 1245436 4538128 CFF8240_1255 Campylobacter fetus subsp. fetus 82-40 HIT family protein YP_892411.1 1245077 D 360106 CDS YP_892412.1 118475375 4538483 complement(1245462..1246310) 1 NC_008599.1 hypothetical protein 1246310 4538483 CFF8240_1256 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892412.1 1245462 R 360106 CDS YP_892413.1 118474584 4538697 complement(1246332..1248518) 1 NC_008599.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 1248518 4538697 CFF8240_1257 Campylobacter fetus subsp. fetus 82-40 polynucleotide phosphorylase/polyadenylase YP_892413.1 1246332 R 360106 CDS YP_892414.1 118475165 4537778 complement(1248528..1249208) 1 NC_008599.1 hypothetical protein 1249208 4537778 CFF8240_1258 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892414.1 1248528 R 360106 CDS YP_892415.1 118474176 4537749 complement(1249205..1251361) 1 NC_008599.1 identified by match to protein family HMM PF04453; hypothetical protein 1251361 4537749 CFF8240_1259 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892415.1 1249205 R 360106 CDS YP_892416.1 118474986 4537867 complement(1251381..1251836) 1 NC_008599.1 identified by match to protein family HMM PF06271; RDD protein 1251836 4537867 CFF8240_1260 Campylobacter fetus subsp. fetus 82-40 RDD protein YP_892416.1 1251381 R 360106 CDS YP_892417.1 118475754 4538187 complement(1251833..1253080) 1 NC_008599.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1253080 purD 4538187 purD Campylobacter fetus subsp. fetus 82-40 phosphoribosylamine--glycine ligase YP_892417.1 1251833 R 360106 CDS YP_892418.1 118474698 4538393 complement(1253337..1253972) 1 NC_008599.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 1253972 hemD 4538393 hemD Campylobacter fetus subsp. fetus 82-40 uroporphyrinogen-III synthase YP_892418.1 1253337 R 360106 CDS YP_892419.1 118475705 4539022 complement(1253977..1254450) 1 NC_008599.1 Mug G:T/U mismatch-specific DNA glycosylase 1254450 4539022 CFF8240_1263 Campylobacter fetus subsp. fetus 82-40 Mug G:T/U mismatch-specific DNA glycosylase YP_892419.1 1253977 R 360106 CDS YP_892420.1 118474706 4539261 complement(1254465..1255997) 1 NC_008599.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1255997 guaA 4539261 guaA Campylobacter fetus subsp. fetus 82-40 GMP synthase YP_892420.1 1254465 R 360106 CDS YP_892421.1 118475341 4538622 1256194..1256634 1 NC_008599.1 hypothetical protein 1256634 4538622 CFF8240_1265 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892421.1 1256194 D 360106 CDS YP_892422.1 118474808 4539195 1256621..1258429 1 NC_008599.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1258429 uvrC 4539195 uvrC Campylobacter fetus subsp. fetus 82-40 excinuclease ABC subunit C YP_892422.1 1256621 D 360106 CDS YP_892423.1 118475071 4538815 1258549..1259244 1 NC_008599.1 hypothetical protein 1259244 4538815 CFF8240_1267 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892423.1 1258549 D 360106 CDS YP_892424.1 118474424 4537808 1259241..1262291 1 NC_008599.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 1262291 4537808 CFF8240_1268 Campylobacter fetus subsp. fetus 82-40 sensor histidine kinase/response regulator YP_892424.1 1259241 D 360106 CDS YP_892425.1 118475491 4538370 1262298..1262678 1 NC_008599.1 identified by match to protein family HMM PF00072; response regulator receiver domain-containing protein 1262678 4538370 CFF8240_1269 Campylobacter fetus subsp. fetus 82-40 response regulator receiver domain-containing protein YP_892425.1 1262298 D 360106 CDS YP_892426.1 118474482 4537822 complement(1262685..1263095) 1 NC_008599.1 protein YhbP 1263095 4537822 CFF8240_1270 Campylobacter fetus subsp. fetus 82-40 protein YhbP YP_892426.1 1262685 R 360106 CDS YP_892427.1 118474470 4537952 1263186..1263713 1 NC_008599.1 putative ATP/GTP-binding protein 1263713 4537952 CFF8240_1271 Campylobacter fetus subsp. fetus 82-40 putative ATP/GTP-binding protein YP_892427.1 1263186 D 360106 CDS YP_892428.1 118475148 4539210 1263769..1264464 1 NC_008599.1 deoxyuridine triphosphatase domain-containing protein 1264464 4539210 CFF8240_1272 Campylobacter fetus subsp. fetus 82-40 deoxyuridine triphosphatase domain-containing protein YP_892428.1 1263769 D 360106 CDS YP_892429.1 118474899 4539054 1264461..1265177 1 NC_008599.1 putative integral membrane protein 1265177 4539054 CFF8240_1273 Campylobacter fetus subsp. fetus 82-40 putative integral membrane protein YP_892429.1 1264461 D 360106 CDS YP_892430.1 118475110 4539446 1265187..1266953 1 NC_008599.1 identified by match to protein family HMM PF02690; Na+/Pi-cotransporter 1266953 4539446 CFF8240_1274 Campylobacter fetus subsp. fetus 82-40 Na+/Pi-cotransporter YP_892430.1 1265187 D 360106 CDS YP_892431.1 118474147 4538034 1267015..1267206 1 NC_008599.1 hypothetical protein 1267206 4538034 CFF8240_1275 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892431.1 1267015 D 360106 CDS YP_892432.1 118475252 4538416 1267508..1267840 1 NC_008599.1 identified by match to protein family HMM PF04341; inner membrane protein YjcH 1267840 4538416 CFF8240_1276 Campylobacter fetus subsp. fetus 82-40 inner membrane protein YjcH YP_892432.1 1267508 D 360106 CDS YP_892433.1 118474299 4538997 1267837..1269450 1 NC_008599.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 1269450 actP 4538997 actP Campylobacter fetus subsp. fetus 82-40 acetate permease YP_892433.1 1267837 D 360106 CDS YP_892434.1 118475622 4538287 complement(1269488..1269898) 1 NC_008599.1 identified by match to protein family HMM PF03061; acyl-CoA hydrolase 1269898 4538287 CFF8240_1278 Campylobacter fetus subsp. fetus 82-40 acyl-CoA hydrolase YP_892434.1 1269488 R 360106 CDS YP_892435.1 118474612 4538122 complement(1269984..1270997) 1 NC_008599.1 identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401; peptide methionine sulfoxide reductase MsrA/msrB 1270997 4538122 CFF8240_1279 Campylobacter fetus subsp. fetus 82-40 peptide methionine sulfoxide reductase MsrA/msrB YP_892435.1 1269984 R 360106 CDS YP_892436.1 118474081 4538744 1271173..1272993 1 NC_008599.1 invasion antigen B 1272993 4538744 CFF8240_1280 Campylobacter fetus subsp. fetus 82-40 invasion antigen B YP_892436.1 1271173 D 360106 CDS YP_892437.1 118474883 4538642 1273104..1273406 1 NC_008599.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 1273406 4538642 CFF8240_1281 Campylobacter fetus subsp. fetus 82-40 F0F1 ATP synthase subunit C YP_892437.1 1273104 D 360106 CDS YP_892438.1 118474535 4538023 complement(1273894..1274193) 1 NC_008599.1 similar to P. aerophilum; hypothetical protein 1274193 4538023 CFF8240_1283 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892438.1 1273894 R 360106 CDS YP_892439.1 118475371 4538479 1274334..1275227 1 NC_008599.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719; AraC family transcriptional regulator 1275227 4538479 CFF8240_1284 Campylobacter fetus subsp. fetus 82-40 AraC family transcriptional regulator YP_892439.1 1274334 D 360106 CDS YP_892440.1 118475707 4539024 1275320..1276465 1 NC_008599.1 identified by match to protein family HMM PF00465; NADH-dependent butanol dehydrogenase a 1276465 4539024 CFF8240_1285 Campylobacter fetus subsp. fetus 82-40 NADH-dependent butanol dehydrogenase a YP_892440.1 1275320 D 360106 CDS YP_892441.1 118474061 4537984 1276530..1276655 1 NC_008599.1 hypothetical protein 1276655 4537984 CFF8240_1286 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892441.1 1276530 D 360106 CDS YP_892442.1 118474481 4537821 1276774..1277019 1 NC_008599.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1277019 4537821 CFF8240_1287 Campylobacter fetus subsp. fetus 82-40 AraC family transcriptional regulator YP_892442.1 1276774 D 360106 CDS YP_892443.1 118475199 4538244 1277142..1277363 1 NC_008599.1 putative periplasmic ATP/GTP-binding protein 1277363 4538244 CFF8240_1289 Campylobacter fetus subsp. fetus 82-40 putative periplasmic ATP/GTP-binding protein YP_892443.1 1277142 D 360106 CDS YP_892444.1 118475494 4538373 complement(1277356..1277484) 1 NC_008599.1 hypothetical protein 1277484 4538373 CFF8240_1288 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892444.1 1277356 R 360106 CDS YP_892445.1 118474393 4539149 1277884..1278339 1 NC_008599.1 hypothetical protein 1278339 4539149 CFF8240_1290 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892445.1 1277884 D 360106 CDS YP_892446.1 118474163 4539090 1278980..1279594 1 NC_008599.1 hypothetical protein 1279594 4539090 CFF8240_1291 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892446.1 1278980 D 360106 CDS YP_892447.1 118475140 4539202 1279827..1281203 1 NC_008599.1 identified by match to protein family HMM PF00209; sodium- and chloride-dependent transporter 1281203 4539202 CFF8240_1292 Campylobacter fetus subsp. fetus 82-40 sodium- and chloride-dependent transporter YP_892447.1 1279827 D 360106 CDS YP_892448.1 118474818 4538129 1281231..1283072 1 NC_008599.1 identified by match to protein family HMM PF00364; match to protein family HMM PF00682; biotin/lipoyl attachment 1283072 4538129 CFF8240_1293 Campylobacter fetus subsp. fetus 82-40 biotin/lipoyl attachment YP_892448.1 1281231 D 360106 CDS YP_892449.1 118474992 4539517 1283229..1284806 1 NC_008599.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 1284806 pckA 4539517 pckA Campylobacter fetus subsp. fetus 82-40 phosphoenolpyruvate carboxykinase YP_892449.1 1283229 D 360106 CDS YP_892450.1 118474717 4539275 1284970..1286484 1 NC_008599.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1286484 argH 4539275 argH Campylobacter fetus subsp. fetus 82-40 argininosuccinate lyase YP_892450.1 1284970 D 360106 CDS YP_892451.1 118475744 4538353 1286652..1286885 1 NC_008599.1 identified by match to protein family HMM PF04023; FeoA domain-containing protein 1286885 4538353 CFF8240_1296 Campylobacter fetus subsp. fetus 82-40 FeoA domain-containing protein YP_892451.1 1286652 D 360106 CDS YP_892452.1 118475527 4538230 1288593..1288991 1 NC_008599.1 ferrous iron transport protein B 1288991 feoB 4538230 feoB Campylobacter fetus subsp. fetus 82-40 ferrous iron transport protein B YP_892452.1 1288593 D 360106 CDS YP_892453.1 118475532 4538235 1289057..1289680 1 NC_008599.1 identified by match to protein family HMM PF02525; acyl carrier protein phosphodiesterase 1289680 4538235 CFF8240_1299 Campylobacter fetus subsp. fetus 82-40 acyl carrier protein phosphodiesterase YP_892453.1 1289057 D 360106 CDS YP_892454.1 118474356 4537922 1290006..1290137 1 NC_008599.1 hypothetical protein 1290137 4537922 CFF8240_1300 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892454.1 1290006 D 360106 CDS YP_892455.1 118475309 4539375 1290374..1290559 1 NC_008599.1 hypothetical protein 1290559 4539375 CFF8240_1301 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892455.1 1290374 D 360106 CDS YP_892456.1 118474158 4539085 complement(1290681..1290815) 1 NC_008599.1 hypothetical protein 1290815 4539085 CFF8240_1302 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892456.1 1290681 R 360106 CDS YP_892457.1 118474925 4538947 complement(1291300..1292868) 1 NC_008599.1 identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; multicopper oxidase family protein 1292868 4538947 CFF8240_1304 Campylobacter fetus subsp. fetus 82-40 multicopper oxidase family protein YP_892457.1 1291300 R 360106 CDS YP_892458.1 118474107 4538656 1293090..1295048 1 NC_008599.1 identified by match to protein family HMM PF00015; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1295048 4538656 CFF8240_1305 Campylobacter fetus subsp. fetus 82-40 methyl-accepting chemotaxis protein YP_892458.1 1293090 D 360106 CDS YP_892459.1 118474958 4537995 complement(1295054..1295179) 1 NC_008599.1 hypothetical protein 1295179 4537995 CFF8240_1306 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892459.1 1295054 R 360106 CDS YP_892460.1 118475258 4539108 1295892..1297682 1 NC_008599.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1297682 4539108 CFF8240_1307 Campylobacter fetus subsp. fetus 82-40 methyl-accepting chemotaxis protein YP_892460.1 1295892 D 360106 CDS YP_892461.1 118474304 4539002 complement(1298066..1298197) 1 NC_008599.1 hypothetical protein 1298197 4539002 CFF8240_1308 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892461.1 1298066 R 360106 CDS YP_892462.1 118474537 4538065 1298263..1298457 1 NC_008599.1 hypothetical protein 1298457 4538065 CFF8240_1309 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892462.1 1298263 D 360106 CDS YP_892463.1 118475753 4538186 complement(1298859..1300934) 1 NC_008599.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1300934 fusA 4538186 fusA Campylobacter fetus subsp. fetus 82-40 elongation factor G YP_892463.1 1298859 R 360106 CDS YP_892464.1 118475749 4538358 complement(1300947..1301417) 1 NC_008599.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1301417 rpsG 4538358 rpsG Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S7 YP_892464.1 1300947 R 360106 CDS YP_892465.2 162135923 4538783 complement(1301484..1301867) 1 NC_008599.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1301867 rpsL 4538783 rpsL Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S12 YP_892465.2 1301484 R 360106 CDS YP_892466.1 118474441 4538988 1301951..1302067 1 NC_008599.1 hypothetical protein 1302067 4538988 CFF8240_1315 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892466.1 1301951 D 360106 CDS YP_892467.1 118474969 4537850 complement(1302048..1306574) 1 NC_008599.1 identified by match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386; DNA-directed RNA polymerase subunit beta' 1306574 rpoC 4537850 rpoC Campylobacter fetus subsp. fetus 82-40 DNA-directed RNA polymerase subunit beta' YP_892467.1 1302048 R 360106 CDS YP_892468.1 118475419 4538217 complement(1306567..1310706) 1 NC_008599.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 1310706 rpoB 4538217 rpoB Campylobacter fetus subsp. fetus 82-40 DNA-directed RNA polymerase subunit beta YP_892468.1 1306567 R 360106 CDS YP_892469.1 118474733 4538546 complement(1310807..1311181) 1 NC_008599.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1311181 rplL 4538546 rplL Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L7/L12 YP_892469.1 1310807 R 360106 CDS YP_892470.1 118475150 4539212 complement(1311214..1311699) 1 NC_008599.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1311699 rplJ 4539212 rplJ Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L10 YP_892470.1 1311214 R 360106 CDS YP_892471.1 118474554 4538083 complement(1311805..1312509) 1 NC_008599.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1312509 rplA 4538083 rplA Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L1 YP_892471.1 1311805 R 360106 CDS YP_892472.1 118474174 4539101 complement(1312569..1312994) 1 NC_008599.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1312994 rplK 4539101 rplK Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L11 YP_892472.1 1312569 R 360106 CDS YP_892473.1 118475193 4539373 complement(1313012..1313542) 1 NC_008599.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 1313542 nusG 4539373 nusG Campylobacter fetus subsp. fetus 82-40 transcription antitermination protein NusG YP_892473.1 1313012 R 360106 CDS YP_892474.1 118475765 4538200 complement(1313552..1313731) 1 NC_008599.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 1313731 secE 4538200 secE Campylobacter fetus subsp. fetus 82-40 preprotein translocase subunit SecE YP_892474.1 1313552 R 360106 CDS YP_892475.1 118474968 4537849 complement(1313847..1314014) 1 NC_008599.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1314014 rpmG 4537849 rpmG Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L33 YP_892475.1 1313847 R 360106 CDS YP_892476.1 118474729 4538542 complement(1314062..1315261) 1 NC_008599.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1315261 tuf 4538542 tuf Campylobacter fetus subsp. fetus 82-40 elongation factor Tu YP_892476.1 1314062 R 360106 CDS YP_892477.1 118475559 4538438 complement(1316041..1316601) 1 NC_008599.1 identified by match to protein family HMM PF00080; copper/zinc superoxide dismutase 1316601 sodC 4538438 sodC Campylobacter fetus subsp. fetus 82-40 copper/zinc superoxide dismutase YP_892477.1 1316041 R 360106 CDS YP_892478.1 118474303 4539001 complement(1316877..1317560) 1 NC_008599.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1317560 pyrF 4539001 pyrF Campylobacter fetus subsp. fetus 82-40 orotidine 5'-phosphate decarboxylase YP_892478.1 1316877 R 360106 CDS YP_892479.1 118474879 4538638 complement(1317560..1317955) 1 NC_008599.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1317955 nusB 4538638 nusB Campylobacter fetus subsp. fetus 82-40 transcription antitermination protein NusB YP_892479.1 1317560 R 360106 CDS YP_892480.1 118474152 4538039 complement(1317957..1318427) 1 NC_008599.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1318427 ribH 4538039 ribH Campylobacter fetus subsp. fetus 82-40 6,7-dimethyl-8-ribityllumazine synthase YP_892480.1 1317957 R 360106 CDS YP_892481.1 118474678 4539562 complement(1318481..1318801) 1 NC_008599.1 identified by match to protein family HMM PF00893; multidrug resistance protein YkkD 1318801 4539562 CFF8240_1335 Campylobacter fetus subsp. fetus 82-40 multidrug resistance protein YkkD YP_892481.1 1318481 R 360106 CDS YP_892482.1 118475636 4538669 complement(1318801..1319127) 1 NC_008599.1 identified by match to protein family HMM PF00893; chaperonin 1319127 4538669 CFF8240_1336 Campylobacter fetus subsp. fetus 82-40 chaperonin YP_892482.1 1318801 R 360106 CDS YP_892483.1 118474288 4539469 complement(1319132..1319962) 1 NC_008599.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1319962 kdsA 4539469 kdsA Campylobacter fetus subsp. fetus 82-40 2-dehydro-3-deoxyphosphooctonate aldolase YP_892483.1 1319132 R 360106 CDS YP_892484.1 118475229 4539176 complement(1319984..1320874) 1 NC_008599.1 identified by match to protein family HMM PF00892; integral membrane protein 1320874 4539176 CFF8240_1338 Campylobacter fetus subsp. fetus 82-40 integral membrane protein YP_892484.1 1319984 R 360106 CDS YP_892485.1 118474391 4539147 1321002..1322393 1 NC_008599.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1322393 engA 4539147 engA Campylobacter fetus subsp. fetus 82-40 GTP-binding protein EngA YP_892485.1 1321002 D 360106 CDS YP_892486.1 118475120 4539319 1322383..1322916 1 NC_008599.1 identified by match to protein family HMM PF01202; shikimate kinase 1322916 aroK 4539319 aroK Campylobacter fetus subsp. fetus 82-40 shikimate kinase YP_892486.1 1322383 D 360106 CDS YP_892487.1 118475659 4538955 1322920..1323891 1 NC_008599.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1323891 trpS 4538955 trpS Campylobacter fetus subsp. fetus 82-40 tryptophanyl-tRNA synthetase YP_892487.1 1322920 D 360106 CDS YP_892488.1 118475748 4538357 1323901..1325145 1 NC_008599.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1325145 serS 4538357 serS Campylobacter fetus subsp. fetus 82-40 seryl-tRNA synthetase YP_892488.1 1323901 D 360106 CDS YP_892489.1 118475167 4537780 1325155..1327485 1 NC_008599.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1327485 4537780 CFF8240_1343 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892489.1 1325155 D 360106 CDS YP_892490.1 118474450 4539073 complement(1327499..1329019) 1 NC_008599.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1329019 leuA 4539073 leuA Campylobacter fetus subsp. fetus 82-40 2-isopropylmalate synthase YP_892490.1 1327499 R 360106 CDS YP_892491.1 118474997 4539522 complement(1329182..1329916) 1 NC_008599.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 1329916 pssA 4539522 pssA Campylobacter fetus subsp. fetus 82-40 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_892491.1 1329182 R 360106 CDS YP_892492.1 118474221 4538266 complement(1329921..1330538) 1 NC_008599.1 identified by match to protein family HMM PF02666; phosphatidylserine decarboxylase 1330538 psd 4538266 psd Campylobacter fetus subsp. fetus 82-40 phosphatidylserine decarboxylase YP_892492.1 1329921 R 360106 CDS YP_892493.1 118474218 4538263 complement(1330541..1332472) 1 NC_008599.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; putative cell division protein FtsH-like protein 1332472 4538263 CFF8240_1347 Campylobacter fetus subsp. fetus 82-40 putative cell division protein FtsH-like protein YP_892493.1 1330541 R 360106 CDS YP_892494.1 118474775 4539414 complement(1332462..1333289) 1 NC_008599.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 1333289 prmA 4539414 prmA Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L11 methyltransferase YP_892494.1 1332462 R 360106 CDS YP_892495.1 118475209 4538254 complement(1333719..1334429) 1 NC_008599.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1334429 hisA 4538254 hisA Campylobacter fetus subsp. fetus 82-40 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_892495.1 1333719 R 360106 CDS YP_892496.1 118475526 4538229 complement(1334429..1335040) 1 NC_008599.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1335040 hisH 4538229 hisH Campylobacter fetus subsp. fetus 82-40 imidazole glycerol phosphate synthase subunit HisH YP_892496.1 1334429 R 360106 CDS YP_892497.1 118474139 4538025 complement(1335024..1335929) 1 NC_008599.1 general glycosylation pathway protein 1335929 4538025 CFF8240_1353 Campylobacter fetus subsp. fetus 82-40 general glycosylation pathway protein YP_892497.1 1335024 R 360106 CDS YP_892498.1 118475135 4539334 complement(1335931..1337718) 1 NC_008599.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; putative epimerase/dehydratase WbiI 1337718 4539334 CFF8240_1354 Campylobacter fetus subsp. fetus 82-40 putative epimerase/dehydratase WbiI YP_892498.1 1335931 R 360106 CDS YP_892499.1 118474320 4538851 complement(1337715..1338809) 1 NC_008599.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212; perosamine synthetase 1338809 4538851 CFF8240_1355 Campylobacter fetus subsp. fetus 82-40 perosamine synthetase YP_892499.1 1337715 R 360106 CDS YP_892500.1 118475251 4538415 1339049..1339573 1 NC_008599.1 identified by match to protein family HMM PF02525; general stress protein 14 1339573 4538415 CFF8240_1356 Campylobacter fetus subsp. fetus 82-40 general stress protein 14 YP_892500.1 1339049 D 360106 CDS YP_892501.1 118474562 4538091 complement(1339889..1341085) 1 NC_008599.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1341085 murD 4538091 murD Campylobacter fetus subsp. fetus 82-40 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_892501.1 1339889 R 360106 CDS YP_892502.1 118475561 4538440 complement(1341089..1342153) 1 NC_008599.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1342153 mraY 4538440 mraY Campylobacter fetus subsp. fetus 82-40 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_892502.1 1341089 R 360106 CDS YP_892503.1 118475593 4539254 1342252..1343715 1 NC_008599.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1343715 gpmI 4539254 gpmI Campylobacter fetus subsp. fetus 82-40 phosphoglyceromutase YP_892503.1 1342252 D 360106 CDS YP_892504.1 118474534 4538022 1343740..1344483 1 NC_008599.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1344483 fabG 4538022 fabG Campylobacter fetus subsp. fetus 82-40 3-ketoacyl-ACP reductase YP_892504.1 1343740 D 360106 CDS YP_892505.1 118474246 4537879 1344544..1344777 1 NC_008599.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1344777 acpP 4537879 acpP Campylobacter fetus subsp. fetus 82-40 acyl carrier protein YP_892505.1 1344544 D 360106 CDS YP_892506.1 118475505 4539478 1344799..1346013 1 NC_008599.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1346013 4539478 CFF8240_1363 Campylobacter fetus subsp. fetus 82-40 3-oxoacyl-(acyl carrier protein) synthase II YP_892506.1 1344799 D 360106 CDS YP_892507.1 118475722 4538756 1346013..1346945 1 NC_008599.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1346945 accA 4538756 accA Campylobacter fetus subsp. fetus 82-40 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_892507.1 1346013 D 360106 CDS YP_892508.1 118474902 4539057 complement(1346981..1347379) 1 NC_008599.1 hypothetical protein 1347379 4539057 CFF8240_1365 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892508.1 1346981 R 360106 CDS YP_892509.1 118474533 4538021 complement(1348715..1349038) 1 NC_008599.1 hypothetical protein 1349038 4538021 CFF8240_1368 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892509.1 1348715 R 360106 CDS YP_892510.1 118475480 4538590 complement(1349084..1350193) 1 NC_008599.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 1350193 prfB 4538590 prfB Campylobacter fetus subsp. fetus 82-40 peptide chain release factor 2 YP_892510.1 1349084 R 360106 CDS YP_892511.1 118474313 4538844 1350365..1351186 1 NC_008599.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 1351186 panC 4538844 panC Campylobacter fetus subsp. fetus 82-40 pantoate--beta-alanine ligase YP_892511.1 1350365 D 360106 CDS YP_892512.1 118475302 4539542 1351188..1352498 1 NC_008599.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; hypothetical protein 1352498 4539542 CFF8240_1371 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892512.1 1351188 D 360106 CDS YP_892513.1 118475434 4539347 1352486..1353496 1 NC_008599.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; tRNA(Ile)-lysidine synthase 1353496 4539347 CFF8240_1373 Campylobacter fetus subsp. fetus 82-40 tRNA(Ile)-lysidine synthase YP_892513.1 1352486 D 360106 CDS YP_892514.1 118474886 4538645 complement(1353459..1353995) 1 NC_008599.1 hypothetical protein 1353995 4538645 CFF8240_1372 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892514.1 1353459 R 360106 CDS YP_892515.1 118474131 4538332 complement(1353982..1354509) 1 NC_008599.1 hypothetical protein 1354509 4538332 CFF8240_1374 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892515.1 1353982 R 360106 CDS YP_892516.1 118475068 4538812 complement(1354506..1355507) 1 NC_008599.1 hypothetical protein 1355507 4538812 CFF8240_1375 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892516.1 1354506 R 360106 CDS YP_892517.1 118475275 4539126 complement(1355574..1356185) 1 NC_008599.1 identified by match to protein family HMM PF04028; lipoprotein 1356185 4539126 CFF8240_1376 Campylobacter fetus subsp. fetus 82-40 lipoprotein YP_892517.1 1355574 R 360106 CDS YP_892518.1 118474317 4538848 complement(1356169..1357473) 1 NC_008599.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1357473 miaB 4538848 miaB Campylobacter fetus subsp. fetus 82-40 (dimethylallyl)adenosine tRNA methylthiotransferase YP_892518.1 1356169 R 360106 CDS YP_892519.1 118475003 4539529 complement(1357470..1357712) 1 NC_008599.1 hypothetical protein 1357712 4539529 CFF8240_1378 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892519.1 1357470 R 360106 CDS YP_892520.1 118475774 4539036 1357914..1359011 1 NC_008599.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1359011 nusA 4539036 nusA Campylobacter fetus subsp. fetus 82-40 transcription elongation factor NusA YP_892520.1 1357914 D 360106 CDS YP_892521.1 118475740 4538349 complement(1359066..1359644) 1 NC_008599.1 identified by match to protein family HMM PF00132; general glycosylation pathway protein 1359644 4538349 CFF8240_1380 Campylobacter fetus subsp. fetus 82-40 general glycosylation pathway protein YP_892521.1 1359066 R 360106 CDS YP_892522.1 118474737 4538550 complement(1359653..1360258) 1 NC_008599.1 identified by match to protein family HMM PF02397; general glycosylation pathway protein 1360258 4538550 CFF8240_1381 Campylobacter fetus subsp. fetus 82-40 general glycosylation pathway protein YP_892522.1 1359653 R 360106 CDS YP_892523.1 118475483 4538362 complement(1360251..1361363) 1 NC_008599.1 identified by match to protein family HMM PF00534; galactosyltransferase 1361363 4538362 CFF8240_1382 Campylobacter fetus subsp. fetus 82-40 galactosyltransferase YP_892523.1 1360251 R 360106 CDS YP_892524.1 118474463 4537945 complement(1361368..1363644) 1 NC_008599.1 identified by match to protein family HMM PF02516; general glycosylation pathway protein 1363644 4537945 CFF8240_1383 Campylobacter fetus subsp. fetus 82-40 general glycosylation pathway protein YP_892524.1 1361368 R 360106 CDS YP_892525.1 118475230 4539177 complement(1363628..1364749) 1 NC_008599.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 1364749 4539177 CFF8240_1384 Campylobacter fetus subsp. fetus 82-40 glycoside hydrolase family protein YP_892525.1 1363628 R 360106 CDS YP_892526.1 118475389 4538865 complement(1364746..1365786) 1 NC_008599.1 identified by match to protein family HMM PF00534; general glycosylation pathway protein 1365786 4538865 CFF8240_1385 Campylobacter fetus subsp. fetus 82-40 general glycosylation pathway protein YP_892526.1 1364746 R 360106 CDS YP_892527.1 118474603 4538113 complement(1365783..1366835) 1 NC_008599.1 identified by match to protein family HMM PF00534; general glycosylation pathway protein 1366835 4538113 CFF8240_1386 Campylobacter fetus subsp. fetus 82-40 general glycosylation pathway protein YP_892527.1 1365783 R 360106 CDS YP_892528.1 118474705 4539260 complement(1366852..1368366) 1 NC_008599.1 identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 1368366 4539260 CFF8240_1387 Campylobacter fetus subsp. fetus 82-40 polysaccharide biosynthesis protein YP_892528.1 1366852 R 360106 CDS YP_892529.1 118475496 4538375 complement(1368521..1369849) 1 NC_008599.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose 6-dehydrogenase 1369849 4538375 CFF8240_1388 Campylobacter fetus subsp. fetus 82-40 UDP-glucose 6-dehydrogenase YP_892529.1 1368521 R 360106 CDS YP_892530.1 118474483 4537823 1369938..1370939 1 NC_008599.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 1370939 4537823 CFF8240_1389 Campylobacter fetus subsp. fetus 82-40 glycosyl transferase family protein YP_892530.1 1369938 D 360106 CDS YP_892531.1 118474421 4537805 1370944..1372461 1 NC_008599.1 hypothetical protein 1372461 4537805 CFF8240_1390 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892531.1 1370944 D 360106 CDS YP_892532.1 118475206 4538251 1372549..1372842 1 NC_008599.1 identified by match to protein family HMM PF04138; GtrA family protein 1372842 4538251 CFF8240_1391 Campylobacter fetus subsp. fetus 82-40 GtrA family protein YP_892532.1 1372549 D 360106 CDS YP_892533.1 118474473 4537955 complement(1372843..1373835) 1 NC_008599.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 1373835 galE 4537955 galE Campylobacter fetus subsp. fetus 82-40 UDP-glucose 4-epimerase YP_892533.1 1372843 R 360106 CDS YP_892534.1 118475739 4538348 complement(1373898..1377755) 1 NC_008599.1 identified by match to protein family HMM PF01420; match to protein family HMM PF02384; restriction and modification enzyme CjeI 1377755 4538348 CFF8240_1393 Campylobacter fetus subsp. fetus 82-40 restriction and modification enzyme CjeI YP_892534.1 1373898 R 360106 CDS YP_892535.1 118474898 4539053 complement(1377834..1378076) 1 NC_008599.1 hypothetical protein 1378076 4539053 CFF8240_1394 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892535.1 1377834 R 360106 CDS YP_892536.1 118474177 4537750 complement(1378087..1378905) 1 NC_008599.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1378905 4537750 CFF8240_1395 Campylobacter fetus subsp. fetus 82-40 DNA ligase YP_892536.1 1378087 R 360106 CDS YP_892537.1 118474945 4538908 complement(1378902..1379960) 1 NC_008599.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; WbnF 1379960 4538908 CFF8240_1396 Campylobacter fetus subsp. fetus 82-40 WbnF YP_892537.1 1378902 R 360106 CDS YP_892538.1 118474343 4538566 complement(1379970..1381187) 1 NC_008599.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; VI polysaccharide biosynthesis protein VipA/tviB 1381187 4538566 CFF8240_1397 Campylobacter fetus subsp. fetus 82-40 VI polysaccharide biosynthesis protein VipA/tviB YP_892538.1 1379970 R 360106 CDS YP_892539.1 118475212 4538257 complement(1381229..1382047) 1 NC_008599.1 hypothetical protein 1382047 4538257 CFF8240_1398 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892539.1 1381229 R 360106 CDS YP_892540.1 118474382 4538927 1382107..1383075 1 NC_008599.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193; lipopolysaccharide heptosyltransferase I 1383075 rfaC 4538927 rfaC Campylobacter fetus subsp. fetus 82-40 lipopolysaccharide heptosyltransferase I YP_892540.1 1382107 D 360106 CDS YP_892541.1 118475340 4538621 1383068..1383952 1 NC_008599.1 acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; essential for survival; plays a role in cell responses to environmental changes; lipid A biosynthesis lauroyl acyltransferase 1383952 4538621 CFF8240_1400 Campylobacter fetus subsp. fetus 82-40 lipid A biosynthesis lauroyl acyltransferase YP_892541.1 1383068 D 360106 CDS YP_892542.1 118474613 4538591 1383949..1384644 1 NC_008599.1 identified by match to protein family HMM PF00535; glycosyltransferase 1384644 4538591 CFF8240_1401 Campylobacter fetus subsp. fetus 82-40 glycosyltransferase YP_892542.1 1383949 D 360106 CDS YP_892543.1 118475094 4538179 1384641..1385711 1 NC_008599.1 identified by match to protein family HMM PF01075; putative heptosyltransferase III waaq 1385711 4538179 CFF8240_1403 Campylobacter fetus subsp. fetus 82-40 putative heptosyltransferase III waaq YP_892543.1 1384641 D 360106 CDS YP_892544.1 118475714 4538747 complement(1385690..1386460) 1 NC_008599.1 identified by match to protein family HMM PF01522; xylanase/chitin deacetylase 1386460 4538747 CFF8240_1402 Campylobacter fetus subsp. fetus 82-40 xylanase/chitin deacetylase YP_892544.1 1385690 R 360106 CDS YP_892545.1 118474684 4538378 complement(1387580..1388686) 1 NC_008599.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 1388686 4538378 CFF8240_1404 Campylobacter fetus subsp. fetus 82-40 glycoside hydrolase family protein YP_892545.1 1387580 R 360106 CDS YP_892546.1 118475608 4539504 complement(1390804..1391724) 1 NC_008599.1 glycosyl transferase family protein 1391724 4539504 CFF8240_1407 Campylobacter fetus subsp. fetus 82-40 glycosyl transferase family protein YP_892546.1 1390804 R 360106 CDS YP_892547.1 118475051 4538795 complement(1391696..1393003) 1 NC_008599.1 hypothetical protein 1393003 4538795 CFF8240_1408 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892547.1 1391696 R 360106 CDS YP_892548.1 118474821 4538132 1393091..1394122 1 NC_008599.1 identified by match to protein family HMM PF00534; WabG 1394122 4538132 CFF8240_1409 Campylobacter fetus subsp. fetus 82-40 WabG YP_892548.1 1393091 D 360106 CDS YP_892549.1 118474261 4537970 1394151..1395050 1 NC_008599.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195; lipopolysaccharide heptosyltransferase II 1395050 rfaF 4537970 rfaF Campylobacter fetus subsp. fetus 82-40 lipopolysaccharide heptosyltransferase II YP_892549.1 1394151 D 360106 CDS YP_892550.1 118475208 4538253 complement(1395016..1395576) 1 NC_008599.1 identified by match to protein family HMM PF01380; match to protein family HMM TIGR00441; phosphoheptose isomerase 1395576 gmhA 4538253 gmhA Campylobacter fetus subsp. fetus 82-40 phosphoheptose isomerase YP_892550.1 1395016 R 360106 CDS YP_892551.1 118475485 4538364 complement(1395586..1396275) 1 NC_008599.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; aspartate racemase 1396275 4538364 CFF8240_1412 Campylobacter fetus subsp. fetus 82-40 aspartate racemase YP_892551.1 1395586 R 360106 CDS YP_892552.1 118475685 4538506 complement(1396281..1397657) 1 NC_008599.1 identified by match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02198; match to protein family HMM TIGR02199; bifunctional protein HldE 1397657 4538506 CFF8240_1413 Campylobacter fetus subsp. fetus 82-40 bifunctional protein HldE YP_892552.1 1396281 R 360106 CDS YP_892553.1 118474525 4538013 complement(1397650..1398618) 1 NC_008599.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197; ADP-L-glycero-D-manno-heptose-6-epimerase 1398618 rfaD 4538013 rfaD Campylobacter fetus subsp. fetus 82-40 ADP-L-glycero-D-manno-heptose-6-epimerase YP_892553.1 1397650 R 360106 CDS YP_892554.1 118475458 4539234 complement(1398615..1399121) 1 NC_008599.1 identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; D,D-heptose 1,7-bisphosphate phosphatase 1399121 4539234 CFF8240_1415 Campylobacter fetus subsp. fetus 82-40 D,D-heptose 1,7-bisphosphate phosphatase YP_892554.1 1398615 R 360106 CDS YP_892555.1 118474479 4537819 1399252..1399566 1 NC_008599.1 identified by match to protein family HMM PF00034; cytochrome c553 1399566 4537819 CFF8240_1416 Campylobacter fetus subsp. fetus 82-40 cytochrome c553 YP_892555.1 1399252 D 360106 CDS YP_892556.1 118475456 4539232 complement(1399628..1403155) 1 NC_008599.1 identified by match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601; serine protease 1403155 4539232 CFF8240_1417 Campylobacter fetus subsp. fetus 82-40 serine protease YP_892556.1 1399628 R 360106 CDS YP_892557.1 118474274 4539455 1403383..1403697 1 NC_008599.1 identified by match to protein family HMM PF00034; cytochrome c553 1403697 4539455 CFF8240_1418 Campylobacter fetus subsp. fetus 82-40 cytochrome c553 YP_892557.1 1403383 D 360106 CDS YP_892558.1 118475250 4538414 complement(1403701..1403931) 1 NC_008599.1 identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847; hypothetical protein 1403931 4538414 CFF8240_1419 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892558.1 1403701 R 360106 CDS YP_892559.1 118475762 4538196 complement(1403934..1406303) 1 NC_008599.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 1406303 4538196 CFF8240_1420 Campylobacter fetus subsp. fetus 82-40 copper-translocating P-type ATPase YP_892559.1 1403934 R 360106 CDS YP_892560.1 118475004 4538044 1407341..1408675 1 NC_008599.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1408675 rho 4538044 rho Campylobacter fetus subsp. fetus 82-40 transcription termination factor Rho YP_892560.1 1407341 D 360106 CDS YP_892561.1 118475756 4538189 1408685..1410274 1 NC_008599.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1410274 4538189 CFF8240_1423 Campylobacter fetus subsp. fetus 82-40 DNA polymerase III subunits gamma and tau YP_892561.1 1408685 D 360106 CDS YP_892562.1 118475484 4538363 complement(1410271..1411053) 1 NC_008599.1 hypothetical protein 1411053 4538363 CFF8240_1422 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892562.1 1410271 R 360106 CDS YP_892563.1 118475745 4538354 complement(1411050..1411460) 1 NC_008599.1 hypothetical protein 1411460 4538354 CFF8240_1424 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892563.1 1411050 R 360106 CDS YP_892564.1 118474627 4538607 1411565..1411816 1 NC_008599.1 XRE family transcriptional regulator 1411816 4538607 CFF8240_1425 Campylobacter fetus subsp. fetus 82-40 XRE family transcriptional regulator YP_892564.1 1411565 D 360106 CDS YP_892565.1 118475376 4538484 complement(1411881..1412705) 1 NC_008599.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 1412705 4538484 CFF8240_1426 Campylobacter fetus subsp. fetus 82-40 enoyl-(acyl carrier protein) reductase YP_892565.1 1411881 R 360106 CDS YP_892566.1 118475272 4539123 complement(1412723..1413391) 1 NC_008599.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1413391 tpiA 4539123 tpiA Campylobacter fetus subsp. fetus 82-40 triosephosphate isomerase YP_892566.1 1412723 R 360106 CDS YP_892567.1 118475257 4539107 complement(1413506..1414711) 1 NC_008599.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1414711 pgk 4539107 pgk Campylobacter fetus subsp. fetus 82-40 phosphoglycerate kinase YP_892567.1 1413506 R 360106 CDS YP_892568.1 118474355 4537921 complement(1414713..1415705) 1 NC_008599.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 1415705 gap 4537921 gap Campylobacter fetus subsp. fetus 82-40 glyceraldehyde-3-phosphate dehydrogenase, type I YP_892568.1 1414713 R 360106 CDS YP_892569.1 118475033 4538429 1415765..1416310 1 NC_008599.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase 1416310 nadD 4538429 nadD Campylobacter fetus subsp. fetus 82-40 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_892569.1 1415765 D 360106 CDS YP_892570.1 118474789 4539429 1416300..1416617 1 NC_008599.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; putative iojap-like protein 1416617 4539429 CFF8240_1431 Campylobacter fetus subsp. fetus 82-40 putative iojap-like protein YP_892570.1 1416300 D 360106 CDS YP_892571.1 118474923 4538945 complement(1416640..1417668) 1 NC_008599.1 identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698; hypothetical protein 1417668 4538945 CFF8240_1432 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892571.1 1416640 R 360106 CDS YP_892572.1 118475115 4539451 1417768..1418649 1 NC_008599.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1418649 4539451 CFF8240_1434 Campylobacter fetus subsp. fetus 82-40 LysR family transcriptional regulator YP_892572.1 1417768 D 360106 CDS YP_892573.1 118474762 4538829 complement(1418621..1420216) 1 NC_008599.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1420216 argS 4538829 argS Campylobacter fetus subsp. fetus 82-40 arginyl-tRNA synthetase YP_892573.1 1418621 R 360106 CDS YP_892574.1 118474594 4538104 complement(1420216..1420431) 1 NC_008599.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; hypothetical protein 1420431 4538104 CFF8240_1435 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892574.1 1420216 R 360106 CDS YP_892575.1 118475289 4539140 complement(1420475..1421086) 1 NC_008599.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1421086 gmk 4539140 gmk Campylobacter fetus subsp. fetus 82-40 guanylate kinase YP_892575.1 1420475 R 360106 CDS YP_892576.1 118474119 4538320 complement(1421083..1422756) 1 NC_008599.1 hypothetical protein 1422756 4538320 CFF8240_1437 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892576.1 1421083 R 360106 CDS YP_892577.1 118474587 4538700 complement(1422820..1423593) 1 NC_008599.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1423593 fliR 4538700 fliR Campylobacter fetus subsp. fetus 82-40 flagellar biosynthesis protein FliR YP_892577.1 1422820 R 360106 CDS YP_892578.1 118474414 4537798 1423778..1425844 1 NC_008599.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; TonB-dependent receptor protein 1425844 4537798 CFF8240_1439 Campylobacter fetus subsp. fetus 82-40 TonB-dependent receptor protein YP_892578.1 1423778 D 360106 CDS YP_892579.1 118474231 4538276 complement(1425881..1426525) 1 NC_008599.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1426525 4538276 CFF8240_1440 Campylobacter fetus subsp. fetus 82-40 ABC transporter ATP-binding protein YP_892579.1 1425881 R 360106 CDS YP_892580.1 118474921 4538943 complement(1426528..1427592) 1 NC_008599.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1427592 tsf 4538943 tsf Campylobacter fetus subsp. fetus 82-40 elongation factor Ts YP_892580.1 1426528 R 360106 CDS YP_892581.1 118474889 4539044 complement(1427592..1428368) 1 NC_008599.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1428368 rpsB 4539044 rpsB Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S2 YP_892581.1 1427592 R 360106 CDS YP_892582.1 118474875 4538634 complement(1428521..1428742) 1 NC_008599.1 hypothetical protein 1428742 4538634 CFF8240_1443 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892582.1 1428521 R 360106 CDS YP_892583.1 118474157 4539084 complement(1428739..1429428) 1 NC_008599.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 1429428 4539084 CFF8240_1444 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892583.1 1428739 R 360106 CDS YP_892584.1 118475113 4539449 complement(1429412..1430035) 1 NC_008599.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1430035 ribE 4539449 ribE Campylobacter fetus subsp. fetus 82-40 riboflavin synthase subunit alpha YP_892584.1 1429412 R 360106 CDS YP_892585.1 118475109 4539445 1430138..1432003 1 NC_008599.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1432003 gidA 4539445 gidA Campylobacter fetus subsp. fetus 82-40 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_892585.1 1430138 D 360106 CDS YP_892586.1 118474376 4538920 complement(1432024..1432143) 1 NC_008599.1 hypothetical protein 1432143 4538920 CFF8240_1447 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892586.1 1432024 R 360106 CDS YP_892587.1 118475313 4539379 1432388..1432894 1 NC_008599.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416; ubiquinol-cytochrome c reductase, iron-sulfur subunit 1432894 petA 4539379 petA Campylobacter fetus subsp. fetus 82-40 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_892587.1 1432388 D 360106 CDS YP_892588.1 118474552 4538081 1432905..1434152 1 NC_008599.1 identified by match to protein family HMM PF00032; match to protein family HMM PF00033; ubiquinol--cytochrome c reductase, cytochrome b subunit 1434152 4538081 CFF8240_1449 Campylobacter fetus subsp. fetus 82-40 ubiquinol--cytochrome c reductase, cytochrome b subunit YP_892588.1 1432905 D 360106 CDS YP_892589.1 118474682 4539567 1434149..1435174 1 NC_008599.1 ubiquinol--cytochrome c reductase, cytochrome c1 subunit 1435174 4539567 CFF8240_1450 Campylobacter fetus subsp. fetus 82-40 ubiquinol--cytochrome c reductase, cytochrome c1 subunit YP_892589.1 1434149 D 360106 CDS YP_892590.1 118475347 4538628 complement(1435266..1435973) 1 NC_008599.1 hypothetical protein 1435973 4538628 CFF8240_1451 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892590.1 1435266 R 360106 CDS YP_892591.1 118474809 4539196 complement(1437004..1437930) 1 NC_008599.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1437930 4539196 CFF8240_1455 Campylobacter fetus subsp. fetus 82-40 radical SAM domain-containing protein YP_892591.1 1437004 R 360106 CDS YP_892592.1 118475174 4537787 complement(1437927..1438958) 1 NC_008599.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1438958 hemE 4537787 hemE Campylobacter fetus subsp. fetus 82-40 uroporphyrinogen decarboxylase YP_892592.1 1437927 R 360106 CDS YP_892593.1 118474213 4538530 complement(1438979..1439488) 1 NC_008599.1 identified by match to protein family HMM PF03350; hypothetical protein 1439488 4538530 CFF8240_1457 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892593.1 1438979 R 360106 CDS YP_892594.1 118474950 4537987 complement(1439563..1440597) 1 NC_008599.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1440597 asd 4537987 asd Campylobacter fetus subsp. fetus 82-40 aspartate-semialdehyde dehydrogenase YP_892594.1 1439563 R 360106 CDS YP_892595.1 118475656 4538952 complement(1440662..1441804) 1 NC_008599.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; acetoacetate metabolism regulatory protein AtoC 1441804 4538952 CFF8240_1459 Campylobacter fetus subsp. fetus 82-40 acetoacetate metabolism regulatory protein AtoC YP_892595.1 1440662 R 360106 CDS YP_892596.1 118474509 4539288 complement(1441809..1442159) 1 NC_008599.1 hypothetical protein 1442159 4539288 CFF8240_1460 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892596.1 1441809 R 360106 CDS YP_892597.1 118474410 4537794 complement(1442174..1442659) 1 NC_008599.1 identified by match to protein family HMM PF04164; putative lipoprotein 1442659 4537794 CFF8240_1461 Campylobacter fetus subsp. fetus 82-40 putative lipoprotein YP_892597.1 1442174 R 360106 CDS YP_892598.1 118475139 4539201 complement(1442701..1445289) 1 NC_008599.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1445289 gyrA 4539201 gyrA Campylobacter fetus subsp. fetus 82-40 DNA gyrase subunit A YP_892598.1 1442701 R 360106 CDS YP_892599.1 118475215 4539161 complement(1445404..1446186) 1 NC_008599.1 hypothetical protein 1446186 4539161 CFF8240_1463 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892599.1 1445404 R 360106 CDS YP_892600.1 118475327 4539393 complement(1446183..1446407) 1 NC_008599.1 putative acyl carrier protein 1446407 4539393 CFF8240_1464 Campylobacter fetus subsp. fetus 82-40 putative acyl carrier protein YP_892600.1 1446183 R 360106 CDS YP_892601.1 118475362 4538469 complement(1446545..1447141) 1 NC_008599.1 identified by match to protein family HMM PF00583; hypothetical protein 1447141 4538469 CFF8240_1465 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892601.1 1446545 R 360106 CDS YP_892602.1 118474669 4539552 complement(1447269..1448753) 1 NC_008599.1 identified by match to protein family HMM PF00501; amino acid adenylation domain-containing protein 1448753 4539552 CFF8240_1466 Campylobacter fetus subsp. fetus 82-40 amino acid adenylation domain-containing protein YP_892602.1 1447269 R 360106 CDS YP_892603.1 118475311 4539377 complement(1450035..1450604) 1 NC_008599.1 transformation system protein 1450604 4539377 CFF8240_1469 Campylobacter fetus subsp. fetus 82-40 transformation system protein YP_892603.1 1450035 R 360106 CDS YP_892604.1 118474378 4538922 complement(1450604..1451152) 1 NC_008599.1 hypothetical protein 1451152 4538922 CFF8240_1470 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892604.1 1450604 R 360106 CDS YP_892605.1 118475104 4539440 complement(1451162..1451833) 1 NC_008599.1 outer membrane liproprotein MapA 1451833 4539440 CFF8240_1471 Campylobacter fetus subsp. fetus 82-40 outer membrane liproprotein MapA YP_892605.1 1451162 R 360106 CDS YP_892606.1 118474744 4538770 complement(1451830..1452045) 1 NC_008599.1 identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013; hypothetical protein 1452045 4538770 CFF8240_1472 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892606.1 1451830 R 360106 CDS YP_892607.1 118475639 4538672 complement(1452076..1453866) 1 NC_008599.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1453866 lepA 4538672 lepA Campylobacter fetus subsp. fetus 82-40 GTP-binding protein LepA YP_892607.1 1452076 R 360106 CDS YP_892608.1 118474648 4539396 complement(1454078..1455007) 1 NC_008599.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1455007 4539396 CFF8240_1474 Campylobacter fetus subsp. fetus 82-40 ribose-phosphate pyrophosphokinase YP_892608.1 1454078 R 360106 CDS YP_892609.1 118475542 4538148 1455119..1456051 1 NC_008599.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1456051 pyrB 4538148 pyrB Campylobacter fetus subsp. fetus 82-40 aspartate carbamoyltransferase catalytic subunit YP_892609.1 1455119 D 360106 CDS YP_892610.1 118474957 4537994 1456055..1457335 1 NC_008599.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857; dihydroorotase 1457335 4537994 CFF8240_1476 Campylobacter fetus subsp. fetus 82-40 dihydroorotase YP_892610.1 1456055 D 360106 CDS YP_892611.1 118474858 4538307 complement(1457450..1457941) 1 NC_008599.1 hypothetical protein 1457941 4538307 CFF8240_1477 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892611.1 1457450 R 360106 CDS YP_892612.1 118475106 4539442 1458389..1458880 1 NC_008599.1 hypothetical protein 1458880 4539442 CFF8240_1478 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892612.1 1458389 D 360106 CDS YP_892613.1 118474298 4538996 1459077..1459553 1 NC_008599.1 hypothetical protein 1459553 4538996 CFF8240_1479 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892613.1 1459077 D 360106 CDS YP_892614.1 118475246 4538410 1459576..1459824 1 NC_008599.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; transformation system protein 1459824 4538410 CFF8240_1480 Campylobacter fetus subsp. fetus 82-40 transformation system protein YP_892614.1 1459576 D 360106 CDS YP_892615.1 118475766 4538201 1459817..1460113 1 NC_008599.1 hypothetical protein 1460113 4538201 CFF8240_1481 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892615.1 1459817 D 360106 CDS YP_892616.1 118474553 4538082 complement(1460254..1461270) 1 NC_008599.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1461270 mnmA 4538082 mnmA Campylobacter fetus subsp. fetus 82-40 tRNA-specific 2-thiouridylase MnmA YP_892616.1 1460254 R 360106 CDS YP_892617.1 118475186 4539366 1461543..1462496 1 NC_008599.1 identified by match to protein family HMM TIGR01583; formate dehydrogenase, cytochrome B subunit 1462496 4539366 CFF8240_1483 Campylobacter fetus subsp. fetus 82-40 formate dehydrogenase, cytochrome B subunit YP_892617.1 1461543 D 360106 CDS YP_892618.1 118474653 4539401 complement(1462557..1463069) 1 NC_008599.1 hypothetical protein 1463069 4539401 CFF8240_1484 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892618.1 1462557 R 360106 CDS YP_892619.1 118475221 4539167 complement(1463126..1463653) 1 NC_008599.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein 1463653 4539167 CFF8240_1485 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892619.1 1463126 R 360106 CDS YP_892620.1 118474638 4539305 complement(1463755..1465113) 1 NC_008599.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318; glutamate synthase, small subunit 1465113 gltD 4539305 gltD Campylobacter fetus subsp. fetus 82-40 glutamate synthase, small subunit YP_892620.1 1463755 R 360106 CDS YP_892621.1 118475372 4538480 complement(1465115..1469512) 1 NC_008599.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; glutamate synthase, large subunit 1469512 gltB 4538480 gltB Campylobacter fetus subsp. fetus 82-40 glutamate synthase, large subunit YP_892621.1 1465115 R 360106 CDS YP_892622.1 118474836 4538710 complement(1469651..1470661) 1 NC_008599.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 1470661 ribD 4538710 ribD Campylobacter fetus subsp. fetus 82-40 riboflavin biosynthesis protein RibD YP_892622.1 1469651 R 360106 CDS YP_892623.1 118475711 4539028 complement(1470718..1470924) 1 NC_008599.1 hypothetical protein 1470924 4539028 CFF8240_1489 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892623.1 1470718 R 360106 CDS YP_892624.1 118474547 4538076 1471222..1471347 1 NC_008599.1 hypothetical protein 1471347 4538076 CFF8240_1490 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892624.1 1471222 D 360106 CDS YP_892625.1 118474205 4538522 complement(1471349..1471771) 1 NC_008599.1 similar to Tmden_0678; identified by match to protein family HMM PF02576; hypothetical protein 1471771 4538522 CFF8240_1491 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892625.1 1471349 R 360106 CDS YP_892626.1 118474708 4539263 complement(1471768..1472136) 1 NC_008599.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1472136 rbfA 4539263 rbfA Campylobacter fetus subsp. fetus 82-40 ribosome-binding factor A YP_892626.1 1471768 R 360106 CDS YP_892627.1 118474402 4539158 complement(1472133..1474649) 1 NC_008599.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1474649 infB 4539158 infB Campylobacter fetus subsp. fetus 82-40 translation initiation factor IF-2 YP_892627.1 1472133 R 360106 CDS YP_892628.1 118474920 4538942 complement(1474636..1474851) 1 NC_008599.1 hypothetical protein 1474851 4538942 CFF8240_1494 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892628.1 1474636 R 360106 CDS YP_892629.1 118474591 4538704 complement(1474903..1475784) 1 NC_008599.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1475784 thrB 4538704 thrB Campylobacter fetus subsp. fetus 82-40 homoserine kinase YP_892629.1 1474903 R 360106 CDS YP_892630.1 118474069 4538732 complement(1475793..1476197) 1 NC_008599.1 hypothetical protein 1476197 4538732 CFF8240_1496 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892630.1 1475793 R 360106 CDS YP_892631.1 118475049 4538793 complement(1476236..1477120) 1 NC_008599.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1477120 lpxC 4538793 lpxC Campylobacter fetus subsp. fetus 82-40 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_892631.1 1476236 R 360106 CDS YP_892632.1 118474285 4539466 complement(1477193..1478095) 1 NC_008599.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; hypothetical protein 1478095 4539466 CFF8240_1498 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892632.1 1477193 R 360106 CDS YP_892633.1 118475260 4539110 complement(1478150..1479520) 1 NC_008599.1 identified by match to protein family HMM PF01551; peptidase M23B 1479520 4539110 CFF8240_1499 Campylobacter fetus subsp. fetus 82-40 peptidase M23B YP_892633.1 1478150 R 360106 CDS YP_892634.1 118475497 4538376 complement(1479581..1480411) 1 NC_008599.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 1480411 4538376 CFF8240_1500 Campylobacter fetus subsp. fetus 82-40 prephenate dehydrogenase YP_892634.1 1479581 R 360106 CDS YP_892635.1 118474522 4538010 1480584..1482857 1 NC_008599.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; OMP85 family outer membrane protein 1482857 4538010 CFF8240_1501 Campylobacter fetus subsp. fetus 82-40 OMP85 family outer membrane protein YP_892635.1 1480584 D 360106 CDS YP_892636.1 118475720 4538754 complement(1482885..1483550) 1 NC_008599.1 identified by match to protein family HMM PF03473; mosc domain-containing protein 1483550 4538754 CFF8240_1502 Campylobacter fetus subsp. fetus 82-40 mosc domain-containing protein YP_892636.1 1482885 R 360106 CDS YP_892637.1 118474707 4539262 complement(1483551..1484414) 1 NC_008599.1 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type 1484414 sppA 4539262 sppA Campylobacter fetus subsp. fetus 82-40 signal peptide peptidase SppA, 36K type YP_892637.1 1483551 R 360106 CDS YP_892638.1 118475030 4538426 complement(1484402..1485622) 1 NC_008599.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; chlorohydrolase 1485622 4538426 CFF8240_1504 Campylobacter fetus subsp. fetus 82-40 chlorohydrolase YP_892638.1 1484402 R 360106 CDS YP_892639.1 118474072 4538735 1485711..1486190 1 NC_008599.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1486190 aroQ 4538735 aroQ Campylobacter fetus subsp. fetus 82-40 3-dehydroquinate dehydratase YP_892639.1 1485711 D 360106 CDS YP_892640.1 118475157 4537770 1486183..1487205 1 NC_008599.1 identified by match to protein family HMM PF00557; Xaa-Pro peptidase 1487205 4537770 CFF8240_1506 Campylobacter fetus subsp. fetus 82-40 Xaa-Pro peptidase YP_892640.1 1486183 D 360106 CDS YP_892641.1 118475660 4538956 1487209..1487700 1 NC_008599.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1487700 folK 4538956 folK Campylobacter fetus subsp. fetus 82-40 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_892641.1 1487209 D 360106 CDS YP_892642.1 118475040 4538784 1487700..1489007 1 NC_008599.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1489007 flhF 4538784 flhF Campylobacter fetus subsp. fetus 82-40 flagellar biosynthesis regulator FlhF YP_892642.1 1487700 D 360106 CDS YP_892643.1 118474588 4538701 1488991..1489854 1 NC_008599.1 identified by match to protein family HMM PF01656; ParaA family ATPase 1489854 4538701 CFF8240_1509 Campylobacter fetus subsp. fetus 82-40 ParaA family ATPase YP_892643.1 1488991 D 360106 CDS YP_892644.1 118475368 4538476 1489868..1490218 1 NC_008599.1 hypothetical protein 1490218 4538476 CFF8240_1510 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892644.1 1489868 D 360106 CDS YP_892645.1 118474443 4539065 1490190..1490894 1 NC_008599.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1490894 fliA 4539065 fliA Campylobacter fetus subsp. fetus 82-40 flagellar biosynthesis sigma factor YP_892645.1 1490190 D 360106 CDS YP_892646.1 118475490 4538369 1490894..1491985 1 NC_008599.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1491985 fliM 4538369 fliM Campylobacter fetus subsp. fetus 82-40 flagellar motor switch protein FliM YP_892646.1 1490894 D 360106 CDS YP_892647.1 118474978 4537859 1491978..1492808 1 NC_008599.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliY 1492808 4537859 CFF8240_1513 Campylobacter fetus subsp. fetus 82-40 flagellar motor switch protein FliY YP_892647.1 1491978 D 360106 CDS YP_892648.1 118474467 4537949 complement(1492881..1493633) 1 NC_008599.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; PP-loop family protein 1493633 4537949 CFF8240_1514 Campylobacter fetus subsp. fetus 82-40 PP-loop family protein YP_892648.1 1492881 R 360106 CDS YP_892649.1 118474692 4538387 complement(1493630..1494316) 1 NC_008599.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1494316 mtnN 4538387 mtnN Campylobacter fetus subsp. fetus 82-40 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_892649.1 1493630 R 360106 CDS YP_892650.1 118474647 4539395 complement(1494313..1495230) 1 NC_008599.1 identified by match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 1495230 fabD 4539395 fabD Campylobacter fetus subsp. fetus 82-40 malonyl CoA-acyl carrier protein transacylase YP_892650.1 1494313 R 360106 CDS YP_892651.1 118475011 4538051 complement(1495239..1495811) 1 NC_008599.1 identified by match to protein family HMM PF00254; fkbp-type peptidyl-prolyl cis-trans isomerase slyd 1495811 4538051 CFF8240_1517 Campylobacter fetus subsp. fetus 82-40 fkbp-type peptidyl-prolyl cis-trans isomerase slyd YP_892651.1 1495239 R 360106 CDS YP_892652.1 118474870 4538629 complement(1495832..1496713) 1 NC_008599.1 identified by match to protein family HMM PF07719; hypothetical protein 1496713 4538629 CFF8240_1518 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892652.1 1495832 R 360106 CDS YP_892653.1 118475629 4538294 complement(1496717..1497238) 1 NC_008599.1 identified by match to protein family HMM PF00691; Omp18 1497238 4538294 CFF8240_1519 Campylobacter fetus subsp. fetus 82-40 Omp18 YP_892653.1 1496717 R 360106 CDS YP_892654.1 118474869 4538319 complement(1497325..1498590) 1 NC_008599.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1498590 tolB 4538319 tolB Campylobacter fetus subsp. fetus 82-40 translocation protein TolB YP_892654.1 1497325 R 360106 CDS YP_892655.1 118475425 4539338 complement(1498587..1499399) 1 NC_008599.1 periplasmic protein 1499399 4539338 CFF8240_1521 Campylobacter fetus subsp. fetus 82-40 periplasmic protein YP_892655.1 1498587 R 360106 CDS YP_892656.1 118474578 4538691 complement(1499401..1499793) 1 NC_008599.1 identified by match to protein family HMM PF02472; ExbD\TolR family transport protein 1499793 4538691 CFF8240_1522 Campylobacter fetus subsp. fetus 82-40 ExbD\TolR family transport protein YP_892656.1 1499401 R 360106 CDS YP_892657.1 118474747 4538773 complement(1499780..1500379) 1 NC_008599.1 identified by match to protein family HMM PF01618; ExbB\TolQ family transport protein 1500379 4538773 CFF8240_1523 Campylobacter fetus subsp. fetus 82-40 ExbB\TolQ family transport protein YP_892657.1 1499780 R 360106 CDS YP_892658.1 118475189 4539369 complement(1500380..1500769) 1 NC_008599.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 1500769 atpC 4539369 atpC Campylobacter fetus subsp. fetus 82-40 F0F1 ATP synthase subunit epsilon YP_892658.1 1500380 R 360106 CDS YP_892659.1 118474804 4539191 complement(1500787..1502184) 1 NC_008599.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1502184 atpD 4539191 atpD Campylobacter fetus subsp. fetus 82-40 F0F1 ATP synthase subunit beta YP_892659.1 1500787 R 360106 CDS YP_892660.1 118474696 4538391 complement(1502202..1503089) 1 NC_008599.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 1503089 atpG 4538391 atpG Campylobacter fetus subsp. fetus 82-40 F0F1 ATP synthase subunit gamma YP_892660.1 1502202 R 360106 CDS YP_892661.1 118474260 4537968 complement(1503099..1504616) 1 NC_008599.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1504616 atpA 4537968 atpA Campylobacter fetus subsp. fetus 82-40 F0F1 ATP synthase subunit alpha YP_892661.1 1503099 R 360106 CDS YP_892662.1 118474956 4537993 complement(1504631..1505161) 1 NC_008599.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 1505161 atpH 4537993 atpH Campylobacter fetus subsp. fetus 82-40 F0F1 ATP synthase subunit delta YP_892662.1 1504631 R 360106 CDS YP_892663.1 118475270 4539121 complement(1505161..1505679) 1 NC_008599.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 1505679 4539121 CFF8240_1529 Campylobacter fetus subsp. fetus 82-40 F0F1 ATP synthase subunit B YP_892663.1 1505161 R 360106 CDS YP_892664.1 118474656 4539404 complement(1505689..1506111) 1 NC_008599.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' 1506111 4539404 CFF8240_1530 Campylobacter fetus subsp. fetus 82-40 F0F1 ATP synthase subunit B' YP_892664.1 1505689 R 360106 CDS YP_892665.1 118475466 4538576 complement(1506185..1507030) 1 NC_008599.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; stage 0 sporulation protein J 1507030 4538576 CFF8240_1531 Campylobacter fetus subsp. fetus 82-40 stage 0 sporulation protein J YP_892665.1 1506185 R 360106 CDS YP_892666.1 118474892 4539047 complement(1507033..1507815) 1 NC_008599.1 identified by match to protein family HMM PF01656; SpoOJ regulator protein 1507815 soj 4539047 soj Campylobacter fetus subsp. fetus 82-40 SpoOJ regulator protein YP_892666.1 1507033 R 360106 CDS YP_892667.1 118474785 4539425 complement(1507812..1508447) 1 NC_008599.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 1508447 4539425 CFF8240_1533 Campylobacter fetus subsp. fetus 82-40 biotin--protein ligase YP_892667.1 1507812 R 360106 CDS YP_892668.1 118474253 4537961 complement(1508428..1509342) 1 NC_008599.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 1509342 fmt 4537961 fmt Campylobacter fetus subsp. fetus 82-40 methionyl-tRNA formyltransferase YP_892668.1 1508428 R 360106 CDS YP_892669.1 118475253 4539103 complement(1509339..1510103) 1 NC_008599.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1510103 proB 4539103 proB Campylobacter fetus subsp. fetus 82-40 gamma-glutamyl kinase YP_892669.1 1509339 R 360106 CDS YP_892670.1 118474188 4537761 complement(1510269..1511303) 1 NC_008599.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1511303 obgE 4537761 obgE Campylobacter fetus subsp. fetus 82-40 GTPase ObgE YP_892670.1 1510269 R 360106 CDS YP_892671.1 118475211 4538256 complement(1511389..1511646) 1 NC_008599.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1511646 rpmA 4538256 rpmA Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L27 YP_892671.1 1511389 R 360106 CDS YP_892672.1 118474453 4539076 complement(1511657..1511965) 1 NC_008599.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 1511965 rplU 4539076 rplU Campylobacter fetus subsp. fetus 82-40 50S ribosomal protein L21 YP_892672.1 1511657 R 360106 CDS YP_892673.1 118475373 4538481 complement(1512174..1513208) 1 NC_008599.1 identified by match to protein family HMM PF03150; cytochrome c551 peroxidase 1513208 4538481 CFF8240_1539 Campylobacter fetus subsp. fetus 82-40 cytochrome c551 peroxidase YP_892673.1 1512174 R 360106 CDS YP_892674.1 118474652 4539400 complement(1513617..1514171) 1 NC_008599.1 identified by match to protein family HMM PF00037; formate dehydrogenase iron-sulfur subunit 1514171 4539400 CFF8240_1540 Campylobacter fetus subsp. fetus 82-40 formate dehydrogenase iron-sulfur subunit YP_892674.1 1513617 R 360106 CDS YP_892675.1 118475465 4538575 complement(1514186..1516558) 1 NC_008599.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; formate dehydrogenase 1516558 4538575 CFF8240_1541 Campylobacter fetus subsp. fetus 82-40 formate dehydrogenase YP_892675.1 1514186 R 360106 CDS YP_892676.1 118475758 4538191 complement(1517154..1517357) 1 NC_008599.1 identified by match to protein family HMM TIGR01409; hypothetical protein 1517357 4538191 CFF8240_1543 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892676.1 1517154 R 360106 CDS YP_892677.1 118475294 4539533 complement(1517487..1518164) 1 NC_008599.1 hypothetical protein 1518164 4539533 CFF8240_1544 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892677.1 1517487 R 360106 CDS YP_892678.1 118474265 4537974 complement(1518161..1519822) 1 NC_008599.1 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding domain-containing protein 1519822 4537974 CFF8240_1545 Campylobacter fetus subsp. fetus 82-40 iron-sulfur cluster-binding domain-containing protein YP_892678.1 1518161 R 360106 CDS YP_892679.1 118474849 4538723 1519954..1521282 1 NC_008599.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 1521282 selA 4538723 selA Campylobacter fetus subsp. fetus 82-40 selenocysteine synthase YP_892679.1 1519954 D 360106 CDS YP_892680.1 118474130 4538331 1521275..1523080 1 NC_008599.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific translation elongation factor 1523080 selB 4538331 selB Campylobacter fetus subsp. fetus 82-40 selenocysteine-specific translation elongation factor YP_892680.1 1521275 D 360106 CDS YP_892681.1 118474630 4539296 1523126..1523866 1 NC_008599.1 hypothetical protein 1523866 4539296 CFF8240_1548 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892681.1 1523126 D 360106 CDS YP_892682.1 118475598 4539494 1523936..1524613 1 NC_008599.1 identified by match to protein family HMM PF02348; acylneuraminate cytidylyltransferase 1524613 4539494 CFF8240_1549 Campylobacter fetus subsp. fetus 82-40 acylneuraminate cytidylyltransferase YP_892682.1 1523936 D 360106 CDS YP_892683.1 118474272 4539453 1524636..1525379 1 NC_008599.1 identified by match to protein family HMM PF01261; AP endonuclease 1525379 4539453 CFF8240_1550 Campylobacter fetus subsp. fetus 82-40 AP endonuclease YP_892683.1 1524636 D 360106 CDS YP_892684.1 118475453 4539229 1525376..1525585 1 NC_008599.1 phosphoribosylglycinamide formyltransferase 2 1525585 4539229 CFF8240_1551 Campylobacter fetus subsp. fetus 82-40 phosphoribosylglycinamide formyltransferase 2 YP_892684.1 1525376 D 360106 CDS YP_892685.1 118474686 4538380 1525615..1525764 1 NC_008599.1 hypothetical protein 1525764 4538380 CFF8240_1552 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892685.1 1525615 D 360106 CDS YP_892686.1 118475202 4538247 1525775..1526578 1 NC_008599.1 phosphoribosylglycinamide synthetase, ATP-grasp 1526578 4538247 CFF8240_1553 Campylobacter fetus subsp. fetus 82-40 phosphoribosylglycinamide synthetase, ATP-grasp YP_892686.1 1525775 D 360106 CDS YP_892687.1 118475427 4539340 1526575..1527258 1 NC_008599.1 hypothetical protein 1527258 4539340 CFF8240_1554 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892687.1 1526575 D 360106 CDS YP_892688.1 118474659 4539407 1527268..1527954 1 NC_008599.1 hypothetical protein 1527954 4539407 CFF8240_1555 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892688.1 1527268 D 360106 CDS YP_892689.1 118474466 4537948 1527917..1528939 1 NC_008599.1 identified by match to protein family HMM PF01354; match to protein family HMM PF03102; sialic acid synthase 1528939 4537948 CFF8240_1556 Campylobacter fetus subsp. fetus 82-40 sialic acid synthase YP_892689.1 1527917 D 360106 CDS YP_892690.1 118474529 4538017 complement(1528994..1530358) 1 NC_008599.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1530358 4538017 CFF8240_1557 Campylobacter fetus subsp. fetus 82-40 glutamate dehydrogenase YP_892690.1 1528994 R 360106 CDS YP_892691.1 118474236 4537869 complement(1530466..1531149) 1 NC_008599.1 identified by match to protein family HMM PF02621; hypothetical protein 1531149 4537869 CFF8240_1558 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892691.1 1530466 R 360106 CDS YP_892692.1 118475173 4537786 complement(1531157..1531786) 1 NC_008599.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1531786 upp 4537786 upp Campylobacter fetus subsp. fetus 82-40 uracil phosphoribosyltransferase YP_892692.1 1531157 R 360106 CDS YP_892693.1 118474896 4539051 complement(1532184..1533431) 1 NC_008599.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme 1533431 4539051 CFF8240_1560 Campylobacter fetus subsp. fetus 82-40 NADP-dependent malic enzyme YP_892693.1 1532184 R 360106 CDS YP_892694.1 118474786 4539426 complement(1533681..1534112) 1 NC_008599.1 identified by match to protein family HMM PF01047; transcriptional regulator 1534112 4539426 CFF8240_1561 Campylobacter fetus subsp. fetus 82-40 transcriptional regulator YP_892694.1 1533681 R 360106 CDS YP_892695.1 118475134 4539333 complement(1534247..1535629) 1 NC_008599.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1535629 gltX 4539333 gltX Campylobacter fetus subsp. fetus 82-40 glutamyl-tRNA synthetase YP_892695.1 1534247 R 360106 CDS YP_892696.1 118474339 4538562 1535703..1536530 1 NC_008599.1 hypothetical protein 1536530 4538562 CFF8240_1563 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892696.1 1535703 D 360106 CDS YP_892697.1 118474608 4538118 complement(1536569..1537906) 1 NC_008599.1 biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase 1537906 accC 4538118 accC Campylobacter fetus subsp. fetus 82-40 biotin carboxylase YP_892697.1 1536569 R 360106 CDS YP_892698.1 118475367 4538475 complement(1537903..1538355) 1 NC_008599.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 1538355 accB 4538475 accB Campylobacter fetus subsp. fetus 82-40 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_892698.1 1537903 R 360106 CDS YP_892699.1 118474939 4538902 1538651..1539211 1 NC_008599.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1539211 dcd 4538902 dcd Campylobacter fetus subsp. fetus 82-40 deoxycytidine triphosphate deaminase YP_892699.1 1538651 D 360106 CDS YP_892700.1 118474203 4538520 1539222..1540340 1 NC_008599.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212; spore coat polysaccharide biosynthesis protein SpsC 1540340 4538520 CFF8240_1567 Campylobacter fetus subsp. fetus 82-40 spore coat polysaccharide biosynthesis protein SpsC YP_892700.1 1539222 D 360106 CDS YP_892701.1 118475651 4538684 complement(1540404..1541666) 1 NC_008599.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur cluster-binding domain-containing protein 1541666 4538684 CFF8240_1568 Campylobacter fetus subsp. fetus 82-40 iron-sulfur cluster-binding domain-containing protein YP_892701.1 1540404 R 360106 CDS YP_892702.1 118474878 4538637 complement(1541667..1542413) 1 NC_008599.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 1542413 4538637 CFF8240_1569 Campylobacter fetus subsp. fetus 82-40 pyrroline-5-carboxylate reductase YP_892702.1 1541667 R 360106 CDS YP_892703.1 118474605 4538115 complement(1542410..1543234) 1 NC_008599.1 hypothetical protein 1543234 4538115 CFF8240_1570 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892703.1 1542410 R 360106 CDS YP_892704.1 118474291 4538989 complement(1543255..1544616) 1 NC_008599.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1544616 hemN 4538989 hemN Campylobacter fetus subsp. fetus 82-40 coproporphyrinogen III oxidase YP_892704.1 1543255 R 360106 CDS YP_892705.1 118474944 4538907 complement(1544616..1545053) 1 NC_008599.1 hypothetical protein 1545053 4538907 CFF8240_1572 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892705.1 1544616 R 360106 CDS YP_892706.1 118474198 4538515 complement(1545046..1545975) 1 NC_008599.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658; ornithine carbamoyltransferase 1545975 argF 4538515 argF Campylobacter fetus subsp. fetus 82-40 ornithine carbamoyltransferase YP_892706.1 1545046 R 360106 CDS YP_892707.1 118475087 4538172 complement(1545984..1546961) 1 NC_008599.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1546961 hemB 4538172 hemB Campylobacter fetus subsp. fetus 82-40 delta-aminolevulinic acid dehydratase YP_892707.1 1545984 R 360106 CDS YP_892708.1 118474145 4538031 1547073..1547660 1 NC_008599.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1547660 ribA 4538031 ribA Campylobacter fetus subsp. fetus 82-40 GTP cyclohydrolase II YP_892708.1 1547073 D 360106 CDS YP_892709.1 118474743 4538769 1547644..1548192 1 NC_008599.1 identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138; methyltransferase GidB 1548192 gidB 4538769 gidB Campylobacter fetus subsp. fetus 82-40 methyltransferase GidB YP_892709.1 1547644 D 360106 CDS YP_892710.1 118475644 4538677 1548186..1548380 1 NC_008599.1 hypothetical protein 1548380 4538677 CFF8240_1577 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892710.1 1548186 D 360106 CDS YP_892711.1 118475014 4538054 1548377..1548691 1 NC_008599.1 hypothetical protein 1548691 4538054 CFF8240_1578 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892711.1 1548377 D 360106 CDS YP_892712.1 118474137 4538338 1548688..1549557 1 NC_008599.1 identified by match to protein family HMM PF01435; M48 family peptidase 1549557 4538338 CFF8240_1579 Campylobacter fetus subsp. fetus 82-40 M48 family peptidase YP_892712.1 1548688 D 360106 CDS YP_892713.1 118474927 4538949 complement(1549567..1550580) 1 NC_008599.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 1550580 alr 4538949 alr Campylobacter fetus subsp. fetus 82-40 alanine racemase YP_892713.1 1549567 R 360106 CDS YP_892714.1 118474385 4538930 complement(1550573..1550833) 1 NC_008599.1 hypothetical protein 1550833 4538930 CFF8240_1581 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892714.1 1550573 R 360106 CDS YP_892715.1 118474716 4539274 complement(1550846..1551814) 1 NC_008599.1 hypothetical protein 1551814 4539274 CFF8240_1582 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892715.1 1550846 R 360106 CDS YP_892716.1 118475665 4538961 1551940..1552386 1 NC_008599.1 identified by match to protein family HMM PF04314; hypothetical protein 1552386 4538961 CFF8240_1583 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892716.1 1551940 D 360106 CDS YP_892717.1 118475509 4539482 1552455..1554677 1 NC_008599.1 hypothetical protein 1554677 4539482 CFF8240_1584 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892717.1 1552455 D 360106 CDS YP_892718.1 118474769 4538836 1554665..1555597 1 NC_008599.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1555597 4538836 CFF8240_1585 Campylobacter fetus subsp. fetus 82-40 radical SAM domain-containing protein YP_892718.1 1554665 D 360106 CDS YP_892719.1 118475043 4538787 1555594..1556664 1 NC_008599.1 identified by match to protein family HMM PF04055; radical SAM family protein 1556664 4538787 CFF8240_1586 Campylobacter fetus subsp. fetus 82-40 radical SAM family protein YP_892719.1 1555594 D 360106 CDS YP_892720.1 118474435 4538980 1556673..1557431 1 NC_008599.1 identified by match to protein family HMM PF00456; transketolase 1557431 4538980 CFF8240_1587 Campylobacter fetus subsp. fetus 82-40 transketolase YP_892720.1 1556673 D 360106 CDS YP_892721.1 118475263 4539113 1557428..1558303 1 NC_008599.1 identified by match to protein family HMM TIGR01444; methyltransferase, FkbM family protein 1558303 4539113 CFF8240_1588 Campylobacter fetus subsp. fetus 82-40 methyltransferase, FkbM family protein YP_892721.1 1557428 D 360106 CDS YP_892722.1 118474284 4539465 1558305..1559171 1 NC_008599.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase 1559171 4539465 CFF8240_1589 Campylobacter fetus subsp. fetus 82-40 transketolase YP_892722.1 1558305 D 360106 CDS YP_892723.1 118475237 4538401 1559168..1559827 1 NC_008599.1 methyltransferase 1559827 4538401 CFF8240_1590 Campylobacter fetus subsp. fetus 82-40 methyltransferase YP_892723.1 1559168 D 360106 CDS YP_892724.1 118474064 4538727 1559834..1560538 1 NC_008599.1 identified by match to protein family HMM PF01596; caffeoyl-CoA O-methyltransferase 1560538 4538727 CFF8240_1591 Campylobacter fetus subsp. fetus 82-40 caffeoyl-CoA O-methyltransferase YP_892724.1 1559834 D 360106 CDS YP_892725.1 118474577 4538690 1560538..1561602 1 NC_008599.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1561602 4538690 CFF8240_1592 Campylobacter fetus subsp. fetus 82-40 radical SAM domain-containing protein YP_892725.1 1560538 D 360106 CDS YP_892726.1 118474469 4537951 1561599..1562663 1 NC_008599.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1562663 4537951 CFF8240_1593 Campylobacter fetus subsp. fetus 82-40 radical SAM domain-containing protein YP_892726.1 1561599 D 360106 CDS YP_892727.1 118474732 4538545 1562663..1563409 1 NC_008599.1 hypothetical protein 1563409 4538545 CFF8240_1594 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892727.1 1562663 D 360106 CDS YP_892728.1 118475531 4538234 1563438..1563791 1 NC_008599.1 hypothetical protein 1563791 4538234 CFF8240_1595 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892728.1 1563438 D 360106 CDS YP_892729.1 118475541 4538147 1563781..1564062 1 NC_008599.1 UDP-glucose 4-epimerase, putative 1564062 4538147 CFF8240_1596 Campylobacter fetus subsp. fetus 82-40 UDP-glucose 4-epimerase, putative YP_892729.1 1563781 D 360106 CDS YP_892730.1 118475312 4539378 1564731..1565006 1 NC_008599.1 hypothetical protein 1565006 4539378 CFF8240_1598 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892730.1 1564731 D 360106 CDS YP_892731.1 118474405 4537789 1565000..1566250 1 NC_008599.1 D-mycarose 3-C-methyltransferase 1566250 4537789 CFF8240_1599 Campylobacter fetus subsp. fetus 82-40 D-mycarose 3-C-methyltransferase YP_892731.1 1565000 D 360106 CDS YP_892732.1 118475417 4538215 1566241..1566927 1 NC_008599.1 ketoreductase 1566927 4538215 CFF8240_1600 Campylobacter fetus subsp. fetus 82-40 ketoreductase YP_892732.1 1566241 D 360106 CDS YP_892733.1 118474327 4538859 1566931..1567995 1 NC_008599.1 identified by match to protein family HMM PF04055; heme biosynthesis protein 1567995 4538859 CFF8240_1601 Campylobacter fetus subsp. fetus 82-40 heme biosynthesis protein YP_892733.1 1566931 D 360106 CDS YP_892734.1 118475269 4539120 1567996..1569105 1 NC_008599.1 identified by match to protein family HMM PF03275; UDP-galactopyranose mutase 1569105 4539120 CFF8240_1602 Campylobacter fetus subsp. fetus 82-40 UDP-galactopyranose mutase YP_892734.1 1567996 D 360106 CDS YP_892735.1 118474086 4537899 1569120..1569872 1 NC_008599.1 methyltransferase 1569872 4537899 CFF8240_1603 Campylobacter fetus subsp. fetus 82-40 methyltransferase YP_892735.1 1569120 D 360106 CDS YP_892736.1 118475018 4538058 1569884..1570513 1 NC_008599.1 hypothetical protein 1570513 4538058 CFF8240_1604 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892736.1 1569884 D 360106 CDS YP_892737.1 118475597 4539493 1570546..1571241 1 NC_008599.1 hypothetical protein 1571241 4539493 CFF8240_1605 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892737.1 1570546 D 360106 CDS YP_892738.1 118475220 4539166 1572680..1573579 1 NC_008599.1 putative ADP-heptose--lipopolysaccharide heptosyltransferase II 1573579 4539166 CFF8240_1607 Campylobacter fetus subsp. fetus 82-40 putative ADP-heptose--lipopolysaccharide heptosyltransferase II YP_892738.1 1572680 D 360106 CDS YP_892739.1 118474080 4538743 1573793..1574800 1 NC_008599.1 hypothetical protein 1574800 4538743 CFF8240_1608 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892739.1 1573793 D 360106 CDS YP_892740.1 118475669 4538965 1574797..1575267 1 NC_008599.1 3-demethylubiquinone-9 3-methyltransferase 1575267 4538965 CFF8240_1609 Campylobacter fetus subsp. fetus 82-40 3-demethylubiquinone-9 3-methyltransferase YP_892740.1 1574797 D 360106 CDS YP_892741.1 118475009 4538049 1575654..1577456 1 NC_008599.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthase 1577456 asnB 4538049 asnB Campylobacter fetus subsp. fetus 82-40 asparagine synthase YP_892741.1 1575654 D 360106 CDS YP_892742.1 118474256 4537964 1577453..1578559 1 NC_008599.1 identified by match to protein family HMM PF00534; glycosyl transferase, group 1 1578559 4537964 CFF8240_1612 Campylobacter fetus subsp. fetus 82-40 glycosyl transferase, group 1 YP_892742.1 1577453 D 360106 CDS YP_892743.1 118475726 4538760 1579802..1580011 1 NC_008599.1 hypothetical protein 1580011 4538760 CFF8240_1614 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892743.1 1579802 D 360106 CDS YP_892744.1 118474651 4539399 1580011..1580736 1 NC_008599.1 hypothetical protein 1580736 4539399 CFF8240_1615 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892744.1 1580011 D 360106 CDS YP_892745.1 118474207 4538524 1580733..1581809 1 NC_008599.1 identified by match to protein family HMM PF00534; group 1 glycosyl transferase 1581809 4538524 CFF8240_1616 Campylobacter fetus subsp. fetus 82-40 group 1 glycosyl transferase YP_892745.1 1580733 D 360106 CDS YP_892746.1 118475321 4539387 1581797..1583548 1 NC_008599.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthase 1583548 asnB 4539387 asnB Campylobacter fetus subsp. fetus 82-40 asparagine synthase YP_892746.1 1581797 D 360106 CDS YP_892747.1 118474572 4538101 1583545..1584615 1 NC_008599.1 identified by match to protein family HMM PF04007; hypothetical protein 1584615 4538101 CFF8240_1618 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892747.1 1583545 D 360106 CDS YP_892748.1 118475554 4538160 1584602..1585255 1 NC_008599.1 hypothetical protein 1585255 4538160 CFF8240_1619 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892748.1 1584602 D 360106 CDS YP_892749.1 118474596 4538106 1585246..1586634 1 NC_008599.1 hypothetical protein 1586634 4538106 CFF8240_1620 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892749.1 1585246 D 360106 CDS YP_892750.1 118475401 4538878 1586627..1588072 1 NC_008599.1 hypothetical protein 1588072 4538878 CFF8240_1621 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892750.1 1586627 D 360106 CDS YP_892751.1 118474714 4539271 1588069..1589466 1 NC_008599.1 hypothetical protein 1589466 4539271 CFF8240_1622 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892751.1 1588069 D 360106 CDS YP_892752.1 118475646 4538679 1589477..1589626 1 NC_008599.1 hypothetical protein 1589626 4538679 CFF8240_1623 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892752.1 1589477 D 360106 CDS YP_892753.1 118474900 4539055 1589623..1591041 1 NC_008599.1 hypothetical protein 1591041 4539055 CFF8240_1624 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892753.1 1589623 D 360106 CDS YP_892754.1 118474431 4538976 1591130..1591297 1 NC_008599.1 hypothetical protein 1591297 4538976 CFF8240_1625 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892754.1 1591130 D 360106 CDS YP_892755.1 118474088 4537901 1591272..1592492 1 NC_008599.1 hypothetical protein 1592492 4537901 CFF8240_1626 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892755.1 1591272 D 360106 CDS YP_892756.1 118475703 4539020 1592519..1593031 1 NC_008599.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 1593031 4539020 CFF8240_1627 Campylobacter fetus subsp. fetus 82-40 adenylylsulfate kinase YP_892756.1 1592519 D 360106 CDS YP_892757.1 118475216 4539162 1593940..1594716 1 NC_008599.1 hypothetical protein 1594716 4539162 CFF8240_1629 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892757.1 1593940 D 360106 CDS YP_892758.1 118474287 4539468 1594713..1596977 1 NC_008599.1 hypothetical protein 1596977 4539468 CFF8240_1630 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892758.1 1594713 D 360106 CDS YP_892759.1 118475234 4538398 1596974..1597558 1 NC_008599.1 identified by match to protein family HMM PF00117; glutamine amidotransferase 1597558 4538398 CFF8240_1631 Campylobacter fetus subsp. fetus 82-40 glutamine amidotransferase YP_892759.1 1596974 D 360106 CDS YP_892760.1 118475689 4538510 1597555..1598298 1 NC_008599.1 identified by match to protein family HMM PF00483; sugar metabolism cluster protein 1598298 4538510 CFF8240_1632 Campylobacter fetus subsp. fetus 82-40 sugar metabolism cluster protein YP_892760.1 1597555 D 360106 CDS YP_892761.1 118474501 4539280 1598339..1599334 1 NC_008599.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; FlmA protein 1599334 4539280 CFF8240_1633 Campylobacter fetus subsp. fetus 82-40 FlmA protein YP_892761.1 1598339 D 360106 CDS YP_892762.1 118475020 4538061 1599369..1599818 1 NC_008599.1 identified by match to protein family HMM PF00583; acetyltransferase 1599818 4538061 CFF8240_1634 Campylobacter fetus subsp. fetus 82-40 acetyltransferase YP_892762.1 1599369 D 360106 CDS YP_892763.1 118474693 4538388 complement(1600015..1601574) 1 NC_008599.1 FlaB; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin B 1601574 4538388 CFF8240_1635 Campylobacter fetus subsp. fetus 82-40 flagellin B YP_892763.1 1600015 R 360106 CDS YP_892764.1 118475571 4538450 complement(1601773..1603329) 1 NC_008599.1 FlaB; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin B 1603329 4538450 CFF8240_1636 Campylobacter fetus subsp. fetus 82-40 flagellin B YP_892764.1 1601773 R 360106 CDS YP_892765.1 118474861 4538310 complement(1603527..1605092) 1 NC_008599.1 methyltransferase 1605092 4538310 CFF8240_1637 Campylobacter fetus subsp. fetus 82-40 methyltransferase YP_892765.1 1603527 R 360106 CDS YP_892766.1 118474980 4537861 complement(1605106..1607091) 1 NC_008599.1 identified by match to protein family HMM PF01973; motility accessory factor 1607091 4537861 CFF8240_1638 Campylobacter fetus subsp. fetus 82-40 motility accessory factor YP_892766.1 1605106 R 360106 CDS YP_892767.1 118475558 4538437 complement(1607182..1607856) 1 NC_008599.1 hypothetical protein 1607856 4538437 CFF8240_1639 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892767.1 1607182 R 360106 CDS YP_892768.1 118474515 4539294 1608004..1609014 1 NC_008599.1 identified by match to protein family HMM PF01594; transporter 1609014 4539294 CFF8240_1640 Campylobacter fetus subsp. fetus 82-40 transporter YP_892768.1 1608004 D 360106 CDS YP_892769.1 118475510 4539484 1609015..1610343 1 NC_008599.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; cation transport protein 1610343 4539484 CFF8240_1641 Campylobacter fetus subsp. fetus 82-40 cation transport protein YP_892769.1 1609015 D 360106 CDS YP_892770.1 118474169 4539096 1610340..1610990 1 NC_008599.1 identified by match to protein family HMM PF02254; hypothetical protein 1610990 4539096 CFF8240_1642 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892770.1 1610340 D 360106 CDS YP_892771.1 118474906 4539061 1611243..1612667 1 NC_008599.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 1612667 aspA 4539061 aspA Campylobacter fetus subsp. fetus 82-40 aspartate ammonia-lyase YP_892771.1 1611243 D 360106 CDS YP_892772.1 118474767 4538834 1612809..1614146 1 NC_008599.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 1614146 4538834 CFF8240_1644 Campylobacter fetus subsp. fetus 82-40 anaerobic C4-dicarboxylate transporter YP_892772.1 1612809 D 360106 CDS YP_892773.1 118474155 4538042 1614490..1616127 1 NC_008599.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1616127 4538042 CFF8240_1645 Campylobacter fetus subsp. fetus 82-40 methyl-accepting chemotaxis protein YP_892773.1 1614490 D 360106 CDS YP_892774.1 118475681 4538501 complement(1616198..1617697) 1 NC_008599.1 identified by match to protein family HMM PF02600; DsbB family disulfide bond formation protein 1617697 4538501 CFF8240_1646 Campylobacter fetus subsp. fetus 82-40 DsbB family disulfide bond formation protein YP_892774.1 1616198 R 360106 CDS YP_892775.1 118474413 4537797 complement(1617708..1617872) 1 NC_008599.1 hypothetical protein 1617872 4537797 CFF8240_1647 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892775.1 1617708 R 360106 CDS YP_892776.1 118475153 4539215 complement(1618046..1620136) 1 NC_008599.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; ferric receptor CfrA 1620136 4539215 CFF8240_1648 Campylobacter fetus subsp. fetus 82-40 ferric receptor CfrA YP_892776.1 1618046 R 360106 CDS YP_892777.1 118475495 4538374 1620353..1620790 1 NC_008599.1 identified by match to protein family HMM PF01618; match to protein family HMM TIGR02805; TonB-system energizer ExbB 1620790 exbB 4538374 exbB Campylobacter fetus subsp. fetus 82-40 TonB-system energizer ExbB YP_892777.1 1620353 D 360106 CDS YP_892778.1 118474521 4538009 1620774..1621163 1 NC_008599.1 identified by match to protein family HMM PF02472; match to protein family HMM TIGR02804; TonB system transport protein ExbD 1621163 expD 4538009 expD Campylobacter fetus subsp. fetus 82-40 TonB system transport protein ExbD YP_892778.1 1620774 D 360106 CDS YP_892779.1 118475544 4538150 1621160..1621885 1 NC_008599.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; protein TonB 1621885 4538150 CFF8240_1651 Campylobacter fetus subsp. fetus 82-40 protein TonB YP_892779.1 1621160 D 360106 CDS YP_892780.1 118474574 4538687 1622020..1623555 1 NC_008599.1 identified by match to protein family HMM PF00496; peptide ABC transporter periplasmic peptide-binding protein 1623555 4538687 CFF8240_1652 Campylobacter fetus subsp. fetus 82-40 peptide ABC transporter periplasmic peptide-binding protein YP_892780.1 1622020 D 360106 CDS YP_892781.1 118474918 4538940 1623555..1624505 1 NC_008599.1 identified by match to protein family HMM PF00528; peptide ABC transporter, permease protein 1624505 4538940 CFF8240_1653 Campylobacter fetus subsp. fetus 82-40 peptide ABC transporter, permease protein YP_892781.1 1623555 D 360106 CDS YP_892782.1 118474766 4538833 1624508..1625290 1 NC_008599.1 identified by match to protein family HMM PF00528; peptide ABC transporter, permease protein 1625290 4538833 CFF8240_1654 Campylobacter fetus subsp. fetus 82-40 peptide ABC transporter, permease protein YP_892782.1 1624508 D 360106 CDS YP_892783.1 118475382 4538490 1625894..1626553 1 NC_008599.1 identified by match to protein family HMM PF00005; nickel import ATP-binding protein NikE 1626553 4538490 CFF8240_1657 Campylobacter fetus subsp. fetus 82-40 nickel import ATP-binding protein NikE YP_892783.1 1625894 D 360106 CDS YP_892784.1 118474803 4539190 complement(1626546..1627811) 1 NC_008599.1 identified by match to protein family HMM PF02040; match to protein family HMM PF03600; arsenical pump membrane protein 1627811 4539190 CFF8240_1656 Campylobacter fetus subsp. fetus 82-40 arsenical pump membrane protein YP_892784.1 1626546 R 360106 CDS YP_892785.1 118474539 4538068 1627934..1628548 1 NC_008599.1 hypothetical protein 1628548 4538068 CFF8240_1658 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892785.1 1627934 D 360106 CDS YP_892786.1 118474118 4538667 1628545..1629180 1 NC_008599.1 hypothetical protein 1629180 4538667 CFF8240_1659 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892786.1 1628545 D 360106 CDS YP_892787.1 118475163 4537776 1629243..1629530 1 NC_008599.1 hypothetical protein 1629530 4537776 CFF8240_1660 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892787.1 1629243 D 360106 CDS YP_892788.1 118475672 4538968 1629548..1630723 1 NC_008599.1 identified by match to protein family HMM PF03738; glutathionylspermidine synthase 1630723 4538968 CFF8240_1661 Campylobacter fetus subsp. fetus 82-40 glutathionylspermidine synthase YP_892788.1 1629548 D 360106 CDS YP_892789.1 118474891 4539046 1630723..1631265 1 NC_008599.1 identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; phenylacrylic acid decarboxylase 1631265 4539046 CFF8240_1662 Campylobacter fetus subsp. fetus 82-40 phenylacrylic acid decarboxylase YP_892789.1 1630723 D 360106 CDS YP_892790.1 118474629 4538609 1631378..1632310 1 NC_008599.1 Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 1632310 hprA 4538609 hprA Campylobacter fetus subsp. fetus 82-40 2-hydroxyacid dehydrogenase YP_892790.1 1631378 D 360106 CDS YP_892791.1 118475655 4538951 1632313..1632810 1 NC_008599.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 1632810 4538951 CFF8240_1664 Campylobacter fetus subsp. fetus 82-40 putative nucleotide-binding protein YP_892791.1 1632313 D 360106 CDS YP_892792.1 118474286 4539467 1632820..1633491 1 NC_008599.1 disulfide isomerase 1633491 4539467 CFF8240_1665 Campylobacter fetus subsp. fetus 82-40 disulfide isomerase YP_892792.1 1632820 D 360106 CDS YP_892793.1 118475032 4538428 1633579..1634886 1 NC_008599.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1634886 4538428 CFF8240_1666 Campylobacter fetus subsp. fetus 82-40 coproporphyrinogen III oxidase YP_892793.1 1633579 D 360106 CDS YP_892794.1 118474955 4537992 complement(1635042..1636751) 1 NC_008599.1 identified by match to protein family HMM PF00004; AAA ATPase 1636751 4537992 CFF8240_1667 Campylobacter fetus subsp. fetus 82-40 AAA ATPase YP_892794.1 1635042 R 360106 CDS YP_892795.1 118474838 4538712 complement(1636748..1638292) 1 NC_008599.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1638292 4538712 CFF8240_1668 Campylobacter fetus subsp. fetus 82-40 long-chain-fatty-acid--CoA ligase YP_892795.1 1636748 R 360106 CDS YP_892796.1 118475708 4539025 complement(1638295..1639578) 1 NC_008599.1 identified by match to protein family HMM PF03349; membrane protein 1639578 4539025 CFF8240_1669 Campylobacter fetus subsp. fetus 82-40 membrane protein YP_892796.1 1638295 R 360106 CDS YP_892797.1 118474719 4538532 complement(1639578..1640426) 1 NC_008599.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 1640426 4538532 CFF8240_1670 Campylobacter fetus subsp. fetus 82-40 endonuclease IV YP_892797.1 1639578 R 360106 CDS YP_892798.1 118475278 4539129 complement(1640423..1640899) 1 NC_008599.1 hypothetical protein 1640899 4539129 CFF8240_1671 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892798.1 1640423 R 360106 CDS YP_892799.1 118474368 4538912 1641383..1641964 1 NC_008599.1 hypothetical protein 1641964 4538912 CFF8240_1673 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892799.1 1641383 D 360106 CDS YP_892800.1 118475096 4538181 1642037..1643401 1 NC_008599.1 hypothetical protein 1643401 4538181 CFF8240_1674 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892800.1 1642037 D 360106 CDS YP_892801.1 118475268 4539119 1643913..1645268 1 NC_008599.1 hypothetical protein 1645268 4539119 CFF8240_1676 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892801.1 1643913 D 360106 CDS YP_892802.1 118474491 4537831 1645258..1646610 1 NC_008599.1 identified by match to protein family HMM PF03787; CRISPR-associated RAMP protein 1646610 4537831 CFF8240_1677 Campylobacter fetus subsp. fetus 82-40 CRISPR-associated RAMP protein YP_892802.1 1645258 D 360106 CDS YP_892803.1 118475463 4538573 1646607..1647044 1 NC_008599.1 hypothetical protein 1647044 4538573 CFF8240_1678 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892803.1 1646607 D 360106 CDS YP_892804.1 118474759 4538825 1647041..1648546 1 NC_008599.1 hypothetical protein 1648546 4538825 CFF8240_1679 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892804.1 1647041 D 360106 CDS YP_892805.1 118474765 4538832 1648566..1648688 1 NC_008599.1 hypothetical protein 1648688 4538832 CFF8240_1680 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892805.1 1648566 D 360106 CDS YP_892806.1 118474090 4537903 complement(1649481..1650200) 1 NC_008599.1 identified by match to protein family HMM PF03741; TerC protein 1650200 4537903 CFF8240_1686 Campylobacter fetus subsp. fetus 82-40 TerC protein YP_892806.1 1649481 R 360106 CDS YP_892807.1 118475034 4538430 complement(1650193..1650780) 1 NC_008599.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 1650780 purN 4538430 purN Campylobacter fetus subsp. fetus 82-40 phosphoribosylglycinamide formyltransferase YP_892807.1 1650193 R 360106 CDS YP_892808.1 118474333 4538555 complement(1650771..1652156) 1 NC_008599.1 similar to N-terminus; identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; hypothetical protein 1652156 4538555 CFF8240_1688 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892808.1 1650771 R 360106 CDS YP_892809.1 118474359 4537925 complement(1652153..1653667) 1 NC_008599.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368; putative Mg chelatase-like protein 1653667 4537925 CFF8240_1689 Campylobacter fetus subsp. fetus 82-40 putative Mg chelatase-like protein YP_892809.1 1652153 R 360106 CDS YP_892810.1 118475317 4539383 complement(1653664..1654182) 1 NC_008599.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1654182 def 4539383 def Campylobacter fetus subsp. fetus 82-40 peptide deformylase YP_892810.1 1653664 R 360106 CDS YP_892811.1 118475102 4539438 complement(1654183..1655265) 1 NC_008599.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1655265 4539438 CFF8240_1691 Campylobacter fetus subsp. fetus 82-40 diguanylate cyclase YP_892811.1 1654183 R 360106 CDS YP_892812.1 118474160 4539087 complement(1655277..1655867) 1 NC_008599.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1655867 clpP 4539087 clpP Campylobacter fetus subsp. fetus 82-40 ATP-dependent Clp protease proteolytic subunit YP_892812.1 1655277 R 360106 CDS YP_892813.1 118474311 4538842 complement(1655867..1657174) 1 NC_008599.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1657174 tig 4538842 tig Campylobacter fetus subsp. fetus 82-40 trigger factor YP_892813.1 1655867 R 360106 CDS YP_892814.1 118475027 4538423 1657308..1657895 1 NC_008599.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1657895 folE 4538423 folE Campylobacter fetus subsp. fetus 82-40 GTP cyclohydrolase I YP_892814.1 1657308 D 360106 CDS YP_892815.1 118474658 4539406 1657892..1659196 1 NC_008599.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1659196 fliI 4539406 fliI Campylobacter fetus subsp. fetus 82-40 flagellum-specific ATP synthase YP_892815.1 1657892 D 360106 CDS YP_892816.1 118475402 4538879 1659393..1660583 1 NC_008599.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase 1660583 4538879 CFF8240_1696 Campylobacter fetus subsp. fetus 82-40 cysteine desulfurase YP_892816.1 1659393 D 360106 CDS YP_892817.1 118474257 4537965 1660605..1661606 1 NC_008599.1 identified by match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; nitrogen fixation protein NifU 1661606 4537965 CFF8240_1697 Campylobacter fetus subsp. fetus 82-40 nitrogen fixation protein NifU YP_892817.1 1660605 D 360106 CDS YP_892818.1 118474782 4539422 1661918..1663879 1 NC_008599.1 identified by match to protein family HMM PF00015; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1663879 4539422 CFF8240_1698 Campylobacter fetus subsp. fetus 82-40 methyl-accepting chemotaxis protein YP_892818.1 1661918 D 360106 CDS YP_892819.1 118474426 4538971 1664041..1664592 1 NC_008599.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481; hemerythrin family non-heme iron protein 1664592 4538971 CFF8240_1699 Campylobacter fetus subsp. fetus 82-40 hemerythrin family non-heme iron protein YP_892819.1 1664041 D 360106 CDS YP_892820.1 118474929 4538892 complement(1664600..1664977) 1 NC_008599.1 identified by match to protein family HMM PF05154; TM2 domain-containing protein 1664977 4538892 CFF8240_1700 Campylobacter fetus subsp. fetus 82-40 TM2 domain-containing protein YP_892820.1 1664600 R 360106 CDS YP_892821.1 118474606 4538116 complement(1665160..1665678) 1 NC_008599.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1665678 infC 4538116 infC Campylobacter fetus subsp. fetus 82-40 translation initiation factor IF-3 YP_892821.1 1665160 R 360106 CDS YP_892822.1 118475741 4538350 complement(1665675..1667528) 1 NC_008599.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 1667528 thrS 4538350 thrS Campylobacter fetus subsp. fetus 82-40 threonyl-tRNA synthetase YP_892822.1 1665675 R 360106 CDS YP_892823.1 118475219 4539165 complement(1667781..1668428) 1 NC_008599.1 hypothetical protein 1668428 4539165 CFF8240_1703 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892823.1 1667781 R 360106 CDS YP_892824.1 118475388 4538863 1668888..1669019 1 NC_008599.1 hypothetical protein 1669019 4538863 CFF8240_1704 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892824.1 1668888 D 360106 CDS YP_892825.1 118474819 4538130 complement(1669870..1670145) 1 NC_008599.1 identified by match to protein family HMM PF05016; plasmid stabilization system protein 1670145 4538130 CFF8240_1705 Campylobacter fetus subsp. fetus 82-40 plasmid stabilization system protein YP_892825.1 1669870 R 360106 CDS YP_892826.1 118474084 4537897 complement(1670139..1670381) 1 NC_008599.1 protein YdaT 1670381 4537897 CFF8240_1706 Campylobacter fetus subsp. fetus 82-40 protein YdaT YP_892826.1 1670139 R 360106 CDS YP_892827.1 118475596 4539492 complement(1671982..1672761) 1 NC_008599.1 hypothetical protein 1672761 4539492 CFF8240_1708 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892827.1 1671982 R 360106 CDS YP_892828.1 118474471 4537953 complement(1672844..1672978) 1 NC_008599.1 hypothetical protein 1672978 4537953 CFF8240_1709 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892828.1 1672844 R 360106 CDS YP_892829.1 118474998 4539523 complement(1673095..1673310) 1 NC_008599.1 hypothetical protein 1673310 4539523 CFF8240_1710 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892829.1 1673095 R 360106 CDS YP_892830.1 118475316 4539382 complement(1673321..1674559) 1 NC_008599.1 identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 1674559 4539382 CFF8240_1711 Campylobacter fetus subsp. fetus 82-40 phage integrase family site specific recombinase YP_892830.1 1673321 R 360106 CDS YP_892831.1 118474197 4538514 complement(1674691..1674918) 1 NC_008599.1 hypothetical protein 1674918 4538514 CFF8240_1712 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892831.1 1674691 R 360106 CDS YP_892832.1 118474932 4538895 complement(1675338..1675784) 1 NC_008599.1 identified by match to protein family HMM PF03653; transmembrane protein 1675784 4538895 CFF8240_1714 Campylobacter fetus subsp. fetus 82-40 transmembrane protein YP_892832.1 1675338 R 360106 CDS YP_892833.1 118475698 4539015 complement(1675848..1676210) 1 NC_008599.1 identified by match to protein family HMM PF05154; hypothetical protein 1676210 4539015 CFF8240_1715 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892833.1 1675848 R 360106 CDS YP_892834.1 118474725 4538538 complement(1676210..1676653) 1 NC_008599.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1676653 lspA 4538538 lspA Campylobacter fetus subsp. fetus 82-40 lipoprotein signal peptidase YP_892834.1 1676210 R 360106 CDS YP_892835.1 118475477 4538587 complement(1676646..1677986) 1 NC_008599.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1677986 glmM 4538587 glmM Campylobacter fetus subsp. fetus 82-40 phosphoglucosamine mutase YP_892835.1 1676646 R 360106 CDS YP_892836.1 118474807 4539194 1678191..1678457 1 NC_008599.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1678457 rpsT 4539194 rpsT Campylobacter fetus subsp. fetus 82-40 30S ribosomal protein S20 YP_892836.1 1678191 D 360106 CDS YP_892837.1 118475342 4538623 1678469..1679536 1 NC_008599.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1679536 prfA 4538623 prfA Campylobacter fetus subsp. fetus 82-40 peptide chain release factor 1 YP_892837.1 1678469 D 360106 CDS YP_892838.1 118474586 4538699 1679562..1679912 1 NC_008599.1 identified by match to protein family HMM PF04237; YyaQ 1679912 4538699 CFF8240_1720 Campylobacter fetus subsp. fetus 82-40 YyaQ YP_892838.1 1679562 D 360106 CDS YP_892839.1 118475218 4539164 complement(1679913..1680416) 1 NC_008599.1 identified by match to protein family HMM PF00857; isochorismatase superfamily hydrolase 1680416 4539164 CFF8240_1721 Campylobacter fetus subsp. fetus 82-40 isochorismatase superfamily hydrolase YP_892839.1 1679913 R 360106 CDS YP_892840.1 118475279 4539130 complement(1680434..1681192) 1 NC_008599.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 1681192 xth 4539130 xth Campylobacter fetus subsp. fetus 82-40 exodeoxyribonuclease III YP_892840.1 1680434 R 360106 CDS YP_892841.1 118474429 4538974 1681315..1682844 1 NC_008599.1 identified by match to protein family HMM PF00884; match to protein family HMM PF08019; type III effector HopAH2-2 1682844 4538974 CFF8240_1723 Campylobacter fetus subsp. fetus 82-40 type III effector HopAH2-2 YP_892841.1 1681315 D 360106 CDS YP_892842.1 118474663 4539411 1682841..1683203 1 NC_008599.1 identified by match to protein family HMM PF01219; diacylglycerol kinase 1683203 4539411 CFF8240_1724 Campylobacter fetus subsp. fetus 82-40 diacylglycerol kinase YP_892842.1 1682841 D 360106 CDS YP_892843.1 118474430 4538975 1683248..1683433 1 NC_008599.1 response regulator receiver domain-containing protein 1683433 4538975 CFF8240_1726 Campylobacter fetus subsp. fetus 82-40 response regulator receiver domain-containing protein YP_892843.1 1683248 D 360106 CDS YP_892844.1 118475589 4539250 complement(1683411..1683956) 1 NC_008599.1 identified by match to protein family HMM PF02659; membrane protein 1683956 4539250 CFF8240_1725 Campylobacter fetus subsp. fetus 82-40 membrane protein YP_892844.1 1683411 R 360106 CDS YP_892845.1 118474191 4537764 1684044..1684952 1 NC_008599.1 identified by match to protein family HMM PF00892; permeases of the drug/metabolite transporter 1684952 4537764 CFF8240_1728 Campylobacter fetus subsp. fetus 82-40 permeases of the drug/metabolite transporter YP_892845.1 1684044 D 360106 CDS YP_892846.1 118474931 4538894 complement(1684949..1685776) 1 NC_008599.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032; cation ABC transporter permease 1685776 4538894 CFF8240_1727 Campylobacter fetus subsp. fetus 82-40 cation ABC transporter permease YP_892846.1 1684949 R 360106 CDS YP_892847.1 118474872 4538631 complement(1685773..1686528) 1 NC_008599.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1686528 4538631 CFF8240_1729 Campylobacter fetus subsp. fetus 82-40 ABC transporter ATP-binding protein YP_892847.1 1685773 R 360106 CDS YP_892848.1 118475351 4538458 complement(1686525..1688066) 1 NC_008599.1 identified by match to protein family HMM PF03824; Ni2+-Co2+ transporter (NiCoT) family protein 1688066 4538458 CFF8240_1730 Campylobacter fetus subsp. fetus 82-40 Ni2+-Co2+ transporter (NiCoT) family protein YP_892848.1 1686525 R 360106 CDS YP_892849.1 118474685 4538379 complement(1688063..1689472) 1 NC_008599.1 identified by match to protein family HMM PF01297; periplasmic solute binding protein 1689472 4538379 CFF8240_1731 Campylobacter fetus subsp. fetus 82-40 periplasmic solute binding protein YP_892849.1 1688063 R 360106 CDS YP_892850.1 118475426 4539339 1689657..1690007 1 NC_008599.1 zinc uptake regulation protein 1690007 4539339 CFF8240_1732 Campylobacter fetus subsp. fetus 82-40 zinc uptake regulation protein YP_892850.1 1689657 D 360106 CDS YP_892851.1 118475299 4539539 1689989..1690105 1 NC_008599.1 hypothetical protein 1690105 4539539 CFF8240_1733 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892851.1 1689989 D 360106 CDS YP_892852.1 118474362 4537928 1690212..1691027 1 NC_008599.1 identified by match to protein family HMM PF03150; cytochrome c551 peroxidase 1691027 4537928 CFF8240_1734 Campylobacter fetus subsp. fetus 82-40 cytochrome c551 peroxidase YP_892852.1 1690212 D 360106 CDS YP_892853.1 118475122 4539321 1691059..1693455 1 NC_008599.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; diguanylate cyclase/phosphodiesterase 1693455 4539321 CFF8240_1735 Campylobacter fetus subsp. fetus 82-40 diguanylate cyclase/phosphodiesterase YP_892853.1 1691059 D 360106 CDS YP_892854.1 118474797 4539184 1693468..1694136 1 NC_008599.1 identified by match to protein family HMM PF00484; carbonic anhydrase 1694136 4539184 CFF8240_1736 Campylobacter fetus subsp. fetus 82-40 carbonic anhydrase YP_892854.1 1693468 D 360106 CDS YP_892855.1 118475478 4538588 1694099..1695973 1 NC_008599.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 1695973 4538588 CFF8240_1737 Campylobacter fetus subsp. fetus 82-40 mechanosensitive ion channel family protein YP_892855.1 1694099 D 360106 CDS YP_892856.1 118474691 4538386 1695966..1696139 1 NC_008599.1 hypothetical protein 1696139 4538386 CFF8240_1738 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892856.1 1695966 D 360106 CDS YP_892857.1 118475693 4539010 1696139..1696312 1 NC_008599.1 hypothetical protein 1696312 4539010 CFF8240_1739 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892857.1 1696139 D 360106 CDS YP_892858.1 118474092 4537905 1696293..1697516 1 NC_008599.1 hypothetical protein 1697516 4537905 CFF8240_1740 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892858.1 1696293 D 360106 CDS YP_892859.1 118475017 4538057 complement(1697545..1698615) 1 NC_008599.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1698615 aroC 4538057 aroC Campylobacter fetus subsp. fetus 82-40 chorismate synthase YP_892859.1 1697545 R 360106 CDS YP_892860.1 118474451 4539074 complement(1698612..1699283) 1 NC_008599.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1699283 rnc 4539074 rnc Campylobacter fetus subsp. fetus 82-40 ribonuclease III YP_892860.1 1698612 R 360106 CDS YP_892861.1 118475046 4538790 complement(1699276..1699701) 1 NC_008599.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1699701 rnhA 4538790 rnhA Campylobacter fetus subsp. fetus 82-40 ribonuclease H YP_892861.1 1699276 R 360106 CDS YP_892862.1 118475205 4538250 complement(1699679..1700689) 1 NC_008599.1 identified by match to protein family HMM PF07719; hypothetical protein 1700689 4538250 CFF8240_1744 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892862.1 1699679 R 360106 CDS YP_892863.1 118474432 4538977 1700751..1702391 1 NC_008599.1 synthesizes RNA primers at the replication forks; DNA primase 1702391 dnaG 4538977 dnaG Campylobacter fetus subsp. fetus 82-40 DNA primase YP_892863.1 1700751 D 360106 CDS YP_892864.1 118475361 4538468 1702388..1703377 1 NC_008599.1 identified by match to protein family HMM PF00764; thiamine biosynthesis protein:ExsB 1703377 4538468 CFF8240_1746 Campylobacter fetus subsp. fetus 82-40 thiamine biosynthesis protein:ExsB YP_892864.1 1702388 D 360106 CDS YP_892865.1 118474887 4538646 1703484..1704278 1 NC_008599.1 radical SAM family protein 1704278 4538646 CFF8240_1747 Campylobacter fetus subsp. fetus 82-40 radical SAM family protein YP_892865.1 1703484 D 360106 CDS YP_892866.1 118474750 4538776 1704333..1705031 1 NC_008599.1 identified by match to protein family HMM PF04402; hypothetical protein 1705031 4538776 CFF8240_1748 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892866.1 1704333 D 360106 CDS YP_892867.1 118475719 4538753 complement(1705423..1706730) 1 NC_008599.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM PF06808; transporter 1706730 4538753 CFF8240_1749 Campylobacter fetus subsp. fetus 82-40 transporter YP_892867.1 1705423 R 360106 CDS YP_892868.1 118474926 4538948 complement(1706815..1707861) 1 NC_008599.1 surface array protein 1707861 4538948 CFF8240_1750 Campylobacter fetus subsp. fetus 82-40 surface array protein YP_892868.1 1706815 R 360106 CDS YP_892869.1 118474201 4538518 complement(1707870..1709315) 1 NC_008599.1 identified by match to protein family HMM PF03062; alginate O-acetyltransferase AlgI 1709315 algI 4538518 algI Campylobacter fetus subsp. fetus 82-40 alginate O-acetyltransferase AlgI YP_892869.1 1707870 R 360106 CDS YP_892870.1 118475424 4539337 1709452..1711125 1 NC_008599.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1711125 ilvD 4539337 ilvD Campylobacter fetus subsp. fetus 82-40 dihydroxy-acid dehydratase YP_892870.1 1709452 D 360106 CDS YP_892871.1 118474418 4537802 1711364..1712890 1 NC_008599.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872; UshA protein 1712890 4537802 CFF8240_1753 Campylobacter fetus subsp. fetus 82-40 UshA protein YP_892871.1 1711364 D 360106 CDS YP_892872.1 118475168 4537781 1713031..1714671 1 NC_008599.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1714671 pyrG 4537781 pyrG Campylobacter fetus subsp. fetus 82-40 CTP synthetase YP_892872.1 1713031 D 360106 CDS YP_892873.1 118475638 4538671 1714665..1716257 1 NC_008599.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 1716257 recJ 4538671 recJ Campylobacter fetus subsp. fetus 82-40 single-stranded-DNA-specific exonuclease RecJ YP_892873.1 1714665 D 360106 CDS YP_892874.1 118475378 4538486 1716258..1717442 1 NC_008599.1 identified by match to protein family HMM PF06965; match to protein family HMM TIGR00773; Na+/H+ antiporter NhaA 1717442 nhaA 4538486 nhaA Campylobacter fetus subsp. fetus 82-40 Na+/H+ antiporter NhaA YP_892874.1 1716258 D 360106 CDS YP_892875.1 118474640 4539307 1717432..1718976 1 NC_008599.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1718976 4539307 CFF8240_1757 Campylobacter fetus subsp. fetus 82-40 ABC transporter ATP-binding protein YP_892875.1 1717432 D 360106 CDS YP_892876.1 118475584 4539245 1719074..1719820 1 NC_008599.1 identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase family protein 1719820 4539245 CFF8240_1758 Campylobacter fetus subsp. fetus 82-40 pyridoxamine 5'-phosphate oxidase family protein YP_892876.1 1719074 D 360106 CDS YP_892877.1 118474882 4538641 1719820..1720014 1 NC_008599.1 hypothetical protein 1720014 4538641 CFF8240_1759 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892877.1 1719820 D 360106 CDS YP_892878.1 118474981 4537862 1720102..1722096 1 NC_008599.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent heme receptor 1722096 4537862 CFF8240_1760 Campylobacter fetus subsp. fetus 82-40 TonB-dependent heme receptor YP_892878.1 1720102 D 360106 CDS YP_892879.1 118474310 4539008 1722086..1723066 1 NC_008599.1 identified by match to protein family HMM PF01032; hemin transport system permease HmuU 1723066 4539008 CFF8240_1761 Campylobacter fetus subsp. fetus 82-40 hemin transport system permease HmuU YP_892879.1 1722086 D 360106 CDS YP_892880.1 118474697 4538392 1723066..1723842 1 NC_008599.1 identified by match to protein family HMM PF00005; ferrichrome transport ATP-binding protein FhuC 1723842 4538392 CFF8240_1762 Campylobacter fetus subsp. fetus 82-40 ferrichrome transport ATP-binding protein FhuC YP_892880.1 1723066 D 360106 CDS YP_892881.1 118475759 4538192 1723845..1724639 1 NC_008599.1 identified by match to protein family HMM PF01497; hemin-binding periplasmic protein HmuT 1724639 4538192 CFF8240_1763 Campylobacter fetus subsp. fetus 82-40 hemin-binding periplasmic protein HmuT YP_892881.1 1723845 D 360106 CDS YP_892882.1 118474136 4538337 1724911..1725420 1 NC_008599.1 flavodoxin family protein 1725420 4538337 CFF8240_1764 Campylobacter fetus subsp. fetus 82-40 flavodoxin family protein YP_892882.1 1724911 D 360106 CDS YP_892883.1 118474489 4537829 1726782..1727540 1 NC_008599.1 hypothetical protein 1727540 4537829 CFF8240_1768 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892883.1 1726782 D 360106 CDS YP_892884.1 118475525 4538228 complement(1727603..1730338) 1 NC_008599.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1730338 flgE 4538228 flgE Campylobacter fetus subsp. fetus 82-40 flagellar hook protein FlgE YP_892884.1 1727603 R 360106 CDS YP_892885.1 118474763 4538830 complement(1730492..1731163) 1 NC_008599.1 identified by match to protein family HMM PF01832; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein 1731163 4538830 CFF8240_1770 Campylobacter fetus subsp. fetus 82-40 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein YP_892885.1 1730492 R 360106 CDS YP_892886.1 118475771 4539033 complement(1731180..1731923) 1 NC_008599.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1731923 dapF 4539033 dapF Campylobacter fetus subsp. fetus 82-40 diaminopimelate epimerase YP_892886.1 1731180 R 360106 CDS YP_892887.1 118474181 4537754 complement(1731904..1732443) 1 NC_008599.1 identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152; dephospho-CoA kinase 1732443 coaE 4537754 coaE Campylobacter fetus subsp. fetus 82-40 dephospho-CoA kinase YP_892887.1 1731904 R 360106 CDS YP_892888.1 118475147 4539209 complement(1732505..1732900) 1 NC_008599.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 1732900 4539209 CFF8240_1773 Campylobacter fetus subsp. fetus 82-40 endoribonuclease L-PSP YP_892888.1 1732505 R 360106 CDS YP_892889.1 118474972 4537853 1733044..1734027 1 NC_008599.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1734027 purM 4537853 purM Campylobacter fetus subsp. fetus 82-40 phosphoribosylaminoimidazole synthetase YP_892889.1 1733044 D 360106 CDS YP_892890.1 118474255 4537963 complement(1734059..1735144) 1 NC_008599.1 identified by match to protein family HMM PF01734; patatin 1735144 4537963 CFF8240_1775 Campylobacter fetus subsp. fetus 82-40 patatin YP_892890.1 1734059 R 360106 CDS YP_892891.1 118474633 4539299 complement(1735131..1736324) 1 NC_008599.1 identified by match to protein family HMM PF00004; recombination factor protein RarA 1736324 4539299 CFF8240_1776 Campylobacter fetus subsp. fetus 82-40 recombination factor protein RarA YP_892891.1 1735131 R 360106 CDS YP_892892.1 118475737 4538346 complement(1736326..1737216) 1 NC_008599.1 identified by match to protein family HMM PF00892; transporter 1737216 4538346 CFF8240_1777 Campylobacter fetus subsp. fetus 82-40 transporter YP_892892.1 1736326 R 360106 CDS YP_892893.1 118475243 4538407 complement(1737272..1737790) 1 NC_008599.1 identified by match to protein family HMM PF00578; thiol peroxidase 1737790 4538407 CFF8240_1778 Campylobacter fetus subsp. fetus 82-40 thiol peroxidase YP_892893.1 1737272 R 360106 CDS YP_892894.1 118474486 4537826 complement(1737868..1738281) 1 NC_008599.1 identified by match to protein family HMM PF06271; RDD protein 1738281 4537826 CFF8240_1779 Campylobacter fetus subsp. fetus 82-40 RDD protein YP_892894.1 1737868 R 360106 CDS YP_892895.1 118474961 4537998 complement(1738281..1738889) 1 NC_008599.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1738889 pyrE 4537998 pyrE Campylobacter fetus subsp. fetus 82-40 orotate phosphoribosyltransferase YP_892895.1 1738281 R 360106 CDS YP_892896.1 118474254 4537962 complement(1738892..1739449) 1 NC_008599.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1739449 frr 4537962 frr Campylobacter fetus subsp. fetus 82-40 ribosome recycling factor YP_892896.1 1738892 R 360106 CDS YP_892897.1 118475727 4538761 complement(1739439..1740356) 1 NC_008599.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 1740356 4538761 CFF8240_1782 Campylobacter fetus subsp. fetus 82-40 polysaccharide deacetylase YP_892897.1 1739439 R 360106 CDS YP_892898.1 118474943 4538906 complement(1740395..1740724) 1 NC_008599.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; protein-export membrane protein 1740724 4538906 CFF8240_1783 Campylobacter fetus subsp. fetus 82-40 protein-export membrane protein YP_892898.1 1740395 R 360106 CDS YP_892899.1 118474668 4539551 complement(1740824..1741504) 1 NC_008599.1 identified by match to protein family HMM PF01027; hypothetical protein 1741504 4539551 CFF8240_1784 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892899.1 1740824 R 360106 CDS YP_892900.1 118475570 4538449 complement(1741883..1742038) 1 NC_008599.1 hypothetical protein 1742038 4538449 CFF8240_1786 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892900.1 1741883 R 360106 CDS YP_892901.1 118475306 4539546 1742748..1745948 1 NC_008599.1 identified by match to protein family HMM PF00082; match to protein family HMM PF03797; serine protease 1745948 4539546 CFF8240_1791 Campylobacter fetus subsp. fetus 82-40 serine protease YP_892901.1 1742748 D 360106 CDS YP_892902.1 118474226 4538271 1747186..1747767 1 NC_008599.1 identified by match to protein family HMM PF02525; MdaB 1747767 4538271 CFF8240_1794 Campylobacter fetus subsp. fetus 82-40 MdaB YP_892902.1 1747186 D 360106 CDS YP_892903.1 118474947 4538910 complement(1747823..1748095) 1 NC_008599.1 flavodoxin 1748095 4538910 CFF8240_1795 Campylobacter fetus subsp. fetus 82-40 flavodoxin YP_892903.1 1747823 R 360106 CDS YP_892904.1 118474244 4537877 complement(1748495..1748647) 1 NC_008599.1 11-cis retinol dehydrogenase 1748647 4537877 CFF8240_1796 Campylobacter fetus subsp. fetus 82-40 11-cis retinol dehydrogenase YP_892904.1 1748495 R 360106 CDS YP_892905.1 118475474 4538584 complement(1748756..1748977) 1 NC_008599.1 major facilitator transporter 1748977 4538584 CFF8240_1797 Campylobacter fetus subsp. fetus 82-40 major facilitator transporter YP_892905.1 1748756 R 360106 CDS YP_892906.1 118474283 4539464 complement(1749227..1749355) 1 NC_008599.1 hypothetical protein 1749355 4539464 CFF8240_1798 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892906.1 1749227 R 360106 CDS YP_892907.1 118474302 4539000 complement(1749373..1749681) 1 NC_008599.1 hypothetical protein 1749681 4539000 CFF8240_1799 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892907.1 1749373 R 360106 CDS YP_892908.1 118475045 4538789 complement(1750226..1750846) 1 NC_008599.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 1750846 thyX 4538789 thyX Campylobacter fetus subsp. fetus 82-40 FAD-dependent thymidylate synthase YP_892908.1 1750226 R 360106 CDS YP_892909.1 118474122 4538323 complement(1750881..1752530) 1 NC_008599.1 identified by match to protein family HMM PF00732; GMC oxidoreductase family protein 1752530 4538323 CFF8240_1801 Campylobacter fetus subsp. fetus 82-40 GMC oxidoreductase family protein YP_892909.1 1750881 R 360106 CDS YP_892910.1 118474835 4538709 complement(1752558..1753079) 1 NC_008599.1 hypothetical protein 1753079 4538709 CFF8240_1802 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892910.1 1752558 R 360106 CDS YP_892911.1 118474702 4539257 complement(1753069..1753503) 1 NC_008599.1 identified by match to protein family HMM PF07681; integral membrane protein 1753503 4539257 CFF8240_1803 Campylobacter fetus subsp. fetus 82-40 integral membrane protein YP_892911.1 1753069 R 360106 CDS YP_892912.1 118475671 4538967 complement(1753573..1753743) 1 NC_008599.1 hypothetical protein 1753743 4538967 CFF8240_1804 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892912.1 1753573 R 360106 CDS YP_892913.1 118474634 4539300 complement(1753855..1754454) 1 NC_008599.1 identified by match to protein family HMM PF00881; nitroreductase 1754454 4539300 CFF8240_1805 Campylobacter fetus subsp. fetus 82-40 nitroreductase YP_892913.1 1753855 R 360106 CDS YP_892914.1 118475156 4537769 complement(1754477..1754992) 1 NC_008599.1 nitroimidazole resistance protein 1754992 4537769 CFF8240_1806 Campylobacter fetus subsp. fetus 82-40 nitroimidazole resistance protein YP_892914.1 1754477 R 360106 CDS YP_892915.1 118475305 4539545 complement(1755946..1757709) 1 NC_008599.1 hypothetical protein 1757709 4539545 CFF8240_1808 Campylobacter fetus subsp. fetus 82-40 hypothetical protein YP_892915.1 1755946 R 360106 CDS YP_892916.1 118475394 4538870 complement(1757736..1758500) 1 NC_008599.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; pseudouridine synthase, Rsu:RNA-binding S4:pseudouridine synthase 1758500 4538870 CFF8240_1809 Campylobacter fetus subsp. fetus 82-40 pseudouridine synthase, Rsu:RNA-binding S4:pseudouridine synthase YP_892916.1 1757736 R 360106 CDS YP_892917.1 118474673 4539556 complement(1758500..1759480) 1 NC_008599.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; KpsF/GutQ 1759480 4539556 CFF8240_1810 Campylobacter fetus subsp. fetus 82-40 KpsF/GutQ YP_892917.1 1758500 R 360106 CDS YP_892918.1 118474645 4539314 complement(1759477..1761414) 1 NC_008599.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; metallo-beta-lactamase family protein 1761414 4539314 CFF8240_1811 Campylobacter fetus subsp. fetus 82-40 metallo-beta-lactamase family protein YP_892918.1 1759477 R 360106 CDS YP_892919.1 118475585 4539246 complement(1761407..1762213) 1 NC_008599.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1762213 ksgA 4539246 ksgA Campylobacter fetus subsp. fetus 82-40 dimethyladenosine transferase YP_892919.1 1761407 R 360106 CDS YP_892920.1 118474831 4538142 complement(1762246..1763478) 1 NC_008599.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690; major facilitator superfamily permease 1763478 4538142 CFF8240_1813 Campylobacter fetus subsp. fetus 82-40 major facilitator superfamily permease YP_892920.1 1762246 R 360106 CDS YP_892921.1 118474977 4537858 1763599..1764357 1 NC_008599.1 identified by match to protein family HMM PF00977; match to protein family HMM TIGR00735; Imidazole glycerol phosphate synthase cyclase subunit 1764357 hisF 4537858 hisF Campylobacter fetus subsp. fetus 82-40 Imidazole glycerol phosphate synthase cyclase subunit YP_892921.1 1763599 D 360106 CDS YP_892922.1 118474761 4538827 1764354..1764893 1 NC_008599.1 purine nucleoside phosphorylase 1764893 4538827 CFF8240_1815 Campylobacter fetus subsp. fetus 82-40 purine nucleoside phosphorylase YP_892922.1 1764354 D 360106 CDS YP_892923.1 118475734 4538343 1764890..1765954 1 NC_008599.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1765954 4538343 CFF8240_1816 Campylobacter fetus subsp. fetus 82-40 ribosomal RNA large subunit methyltransferase N YP_892923.1 1764890 D 360106 CDS YP_892924.1 118474140 4538026 1765951..1766250 1 NC_008599.1 identified by match to protein family HMM PF04993; TfoX domain-containing protein 1766250 4538026 CFF8240_1817 Campylobacter fetus subsp. fetus 82-40 TfoX domain-containing protein YP_892924.1 1765951 D 360106 CDS YP_892925.1 118474442 4539064 complement(1766401..1767360) 1 NC_008599.1 similar to jhp_0321; identified by match to protein family HMM PF00849; RNA pseudouridine synthase 1767360 4539064 CFF8240_1818 Campylobacter fetus subsp. fetus 82-40 RNA pseudouridine synthase YP_892925.1 1766401 R 360106 CDS YP_892926.1 118475697 4539014 1767442..1768770 1 NC_008599.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1768770 purB 4539014 purB Campylobacter fetus subsp. fetus 82-40 adenylosuccinate lyase YP_892926.1 1767442 D 360106 CDS YP_892927.1 118474247 4537880 1768847..1771222 1 NC_008599.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1771222 4537880 CFF8240_1820 Campylobacter fetus subsp. fetus 82-40 ribonucleotide-diphosphate reductase subunit alpha YP_892927.1 1768847 D 360106 CDS YP_892928.1 118475451 4539227 1771451..1772920 1 NC_008599.1 identified by match to protein family HMM PF00324; lysine-specific permease 1772920 lysP 4539227 lysP Campylobacter fetus subsp. fetus 82-40 lysine-specific permease YP_892928.1 1771451 D 360106 CDS YP_892929.1 118474695 4538390 complement(1772968..1773441) 1 NC_008599.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1773441 ruvC 4538390 ruvC Campylobacter fetus subsp. fetus 82-40 Holliday junction resolvase YP_892929.1 1772968 R 360106 CDS