-- dump date 20140619_021340 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 360106000001 SEQ_END SEQ_END NC_008599.1 1773615 1773615 DR NC_008599.1; contig end 1773615..1773615 Campylobacter fetus subsp. fetus 82-40 YP_891211.1 CDS dnaA NC_008599.1 1 1311 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1..1311 Campylobacter fetus subsp. fetus 82-40 4538124 YP_891212.1 CDS dnaN NC_008599.1 1449 2519 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1449..2519 Campylobacter fetus subsp. fetus 82-40 4538203 YP_891213.1 CDS gyrB NC_008599.1 2528 4849 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 2528..4849 Campylobacter fetus subsp. fetus 82-40 4539301 YP_891214.1 CDS CFF8240_0004 NC_008599.1 4849 6231 D identified by match to protein family HMM PF00563; diguanylate cyclase/phosphodiesterase 4849..6231 Campylobacter fetus subsp. fetus 82-40 4538617 YP_891215.1 CDS queF NC_008599.1 6234 6674 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 6234..6674 Campylobacter fetus subsp. fetus 82-40 4538204 YP_891216.1 CDS CFF8240_0006 NC_008599.1 6684 7904 D hydrolase 6684..7904 Campylobacter fetus subsp. fetus 82-40 4539408 YP_891217.1 CDS CFF8240_0007 NC_008599.1 8055 8477 D hypothetical protein 8055..8477 Campylobacter fetus subsp. fetus 82-40 4537807 YP_891218.1 CDS CFF8240_0008 NC_008599.1 8478 10118 R identified by match to protein family HMM PF06429; flagellar hook protein complement(8478..10118) Campylobacter fetus subsp. fetus 82-40 4537886 YP_891219.1 CDS flgD NC_008599.1 10115 10906 R acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein complement(10115..10906) Campylobacter fetus subsp. fetus 82-40 4538668 YP_891220.1 CDS CFF8240_0010 NC_008599.1 10964 12565 R hypothetical protein complement(10964..12565) Campylobacter fetus subsp. fetus 82-40 4538995 YP_891221.1 CDS CFF8240_0011 NC_008599.1 12725 13927 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter 12725..13927 Campylobacter fetus subsp. fetus 82-40 4538092 YP_891222.1 CDS CFF8240_0012 NC_008599.1 13920 14054 D hypothetical protein 13920..14054 Campylobacter fetus subsp. fetus 82-40 4537911 YP_891223.1 CDS typA NC_008599.1 14014 15822 D identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA/BipA 14014..15822 Campylobacter fetus subsp. fetus 82-40 4537988 YP_891224.1 CDS CFF8240_0014 NC_008599.1 15822 16505 D hypothetical protein 15822..16505 Campylobacter fetus subsp. fetus 82-40 4538292 YP_891225.1 CDS CFF8240_0015 NC_008599.1 16546 17607 R putative helix-turn-helix containsing protein complement(16546..17607) Campylobacter fetus subsp. fetus 82-40 4539403 YP_891226.1 CDS rnhB NC_008599.1 17615 18184 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(17615..18184) Campylobacter fetus subsp. fetus 82-40 4538877 YP_891227.1 CDS CFF8240_0017 NC_008599.1 18177 19154 R identified by match to protein family HMM PF04332; hypothetical protein complement(18177..19154) Campylobacter fetus subsp. fetus 82-40 4539200 YP_891228.1 CDS CFF8240_0018 NC_008599.1 19281 20240 D identified by match to protein family HMM PF00005; ferric cations import ATP-binding protein FbpC 1 19281..20240 Campylobacter fetus subsp. fetus 82-40 4537967 YP_891229.1 CDS CFF8240_0019 NC_008599.1 20250 20879 R Hsp12 variant C complement(20250..20879) Campylobacter fetus subsp. fetus 82-40 4539056 YP_891230.1 CDS CFF8240_0020 NC_008599.1 21001 21945 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein complement(21001..21945) Campylobacter fetus subsp. fetus 82-40 4537979 YP_891231.1 CDS nrdD NC_008599.1 22265 24334 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 22265..24334 Campylobacter fetus subsp. fetus 82-40 4538094 YP_891232.1 CDS CFF8240_0022 NC_008599.1 24547 25911 D identified by match to protein family HMM PF04095; putative nicotinate phosphoribosyltransferase 24547..25911 Campylobacter fetus subsp. fetus 82-40 4538774 YP_891233.1 CDS CFF8240_0023 NC_008599.1 25922 26083 D hypothetical protein 25922..26083 Campylobacter fetus subsp. fetus 82-40 4539415 YP_891234.1 CDS CFF8240_0024 NC_008599.1 26077 26748 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495; anaerobic ribonucleoside-triphosphate reductase activating protein 26077..26748 Campylobacter fetus subsp. fetus 82-40 4538339 YP_891235.1 CDS CFF8240_0025 NC_008599.1 26797 27345 R identified by match to protein family HMM PF03498; cytolethal distending toxin A/C family protein complement(26797..27345) Campylobacter fetus subsp. fetus 82-40 4538073 YP_891236.1 CDS CFF8240_0026 NC_008599.1 27345 28145 R identified by match to protein family HMM PF03372; cytolethal distending toxin complement(27345..28145) Campylobacter fetus subsp. fetus 82-40 4538857 YP_891237.1 CDS CFF8240_0027 NC_008599.1 28154 28975 R identified by match to protein family HMM PF03498; cytolethal distending toxin A complement(28154..28975) Campylobacter fetus subsp. fetus 82-40 4538404 YP_891238.1 CDS CFF8240_0028 NC_008599.1 29351 29839 R identified by match to protein family HMM TIGR02532; putative transformation system protein complement(29351..29839) Campylobacter fetus subsp. fetus 82-40 4538030 YP_891239.1 CDS nrdF NC_008599.1 30007 31029 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 30007..31029 Campylobacter fetus subsp. fetus 82-40 4538739 YP_891240.1 CDS CFF8240_0030 NC_008599.1 31019 31681 D identified by match to protein family HMM PF00795; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 31019..31681 Campylobacter fetus subsp. fetus 82-40 4539518 YP_891241.1 CDS pcm NC_008599.1 31739 32368 D catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 31739..32368 Campylobacter fetus subsp. fetus 82-40 4538492 YP_891242.1 CDS CFF8240_0032 NC_008599.1 32443 33093 D identified by match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase 32443..33093 Campylobacter fetus subsp. fetus 82-40 4538777 YP_891243.1 CDS rpsJ NC_008599.1 33549 33860 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 33549..33860 Campylobacter fetus subsp. fetus 82-40 4539330 YP_891244.1 CDS rplC NC_008599.1 33879 34457 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 33879..34457 Campylobacter fetus subsp. fetus 82-40 4538119 YP_891245.1 CDS rplD NC_008599.1 34454 35068 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 34454..35068 Campylobacter fetus subsp. fetus 82-40 4538946 YP_891246.1 CDS rplW NC_008599.1 35071 35352 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 35071..35352 Campylobacter fetus subsp. fetus 82-40 4539078 YP_891247.1 CDS rplB NC_008599.1 35354 36184 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 35354..36184 Campylobacter fetus subsp. fetus 82-40 4538306 YP_891248.1 CDS rpsS NC_008599.1 36187 36468 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 36187..36468 Campylobacter fetus subsp. fetus 82-40 4538268 YP_891249.1 CDS rplV NC_008599.1 36478 36810 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 36478..36810 Campylobacter fetus subsp. fetus 82-40 4539376 YP_891250.1 CDS rpsC NC_008599.1 36812 37510 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 36812..37510 Campylobacter fetus subsp. fetus 82-40 4538999 YP_891251.1 CDS rplP NC_008599.1 37513 37938 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 37513..37938 Campylobacter fetus subsp. fetus 82-40 4538249 YP_891252.1 CDS rpmC NC_008599.1 37925 38110 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 37925..38110 Campylobacter fetus subsp. fetus 82-40 4538984 YP_891253.1 CDS rpsQ NC_008599.1 38121 38378 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 38121..38378 Campylobacter fetus subsp. fetus 82-40 4538571 YP_891254.1 CDS rplN NC_008599.1 38378 38746 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 38378..38746 Campylobacter fetus subsp. fetus 82-40 4538246 YP_891255.1 CDS rplX NC_008599.1 38746 38979 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 38746..38979 Campylobacter fetus subsp. fetus 82-40 4538508 YP_891256.1 CDS rplE NC_008599.1 38982 39524 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 38982..39524 Campylobacter fetus subsp. fetus 82-40 4538694 YP_891257.1 CDS rpsN NC_008599.1 39526 39711 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 39526..39711 Campylobacter fetus subsp. fetus 82-40 4538778 YP_891258.1 CDS rpsH NC_008599.1 39722 40117 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 39722..40117 Campylobacter fetus subsp. fetus 82-40 4539031 YP_891259.1 CDS rplF NC_008599.1 40239 40775 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 40239..40775 Campylobacter fetus subsp. fetus 82-40 4538164 YP_891260.1 CDS rplR NC_008599.1 40785 41141 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 40785..41141 Campylobacter fetus subsp. fetus 82-40 4539502 YP_891261.1 CDS rpsE NC_008599.1 41156 41599 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 41156..41599 Campylobacter fetus subsp. fetus 82-40 4539217 YP_891262.1 CDS rplO NC_008599.1 41609 42010 D late assembly protein; 50S ribosomal protein L15 41609..42010 Campylobacter fetus subsp. fetus 82-40 4538262 YP_891263.1 CDS secY NC_008599.1 42010 43272 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 42010..43272 Campylobacter fetus subsp. fetus 82-40 4538926 YP_891264.1 CDS map NC_008599.1 43274 44032 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 43274..44032 Campylobacter fetus subsp. fetus 82-40 4539214 YP_891265.1 CDS infA NC_008599.1 44281 44499 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 44281..44499 Campylobacter fetus subsp. fetus 82-40 4538594 YP_891266.1 CDS rpsM NC_008599.1 44776 45144 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 44776..45144 Campylobacter fetus subsp. fetus 82-40 4539230 YP_891267.1 CDS rpsK NC_008599.1 45154 45546 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 45154..45546 Campylobacter fetus subsp. fetus 82-40 4538666 YP_891268.1 CDS rpsD NC_008599.1 45574 46200 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 45574..46200 Campylobacter fetus subsp. fetus 82-40 4539269 YP_891269.1 CDS rpoA NC_008599.1 46213 47211 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 46213..47211 Campylobacter fetus subsp. fetus 82-40 4539118 YP_891270.1 CDS rplQ NC_008599.1 47230 47586 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 47230..47586 Campylobacter fetus subsp. fetus 82-40 4539463 YP_891271.1 CDS CFF8240_0061 NC_008599.1 47811 48077 D identified by match to protein family HMM PF01106; NifU family protein 47811..48077 Campylobacter fetus subsp. fetus 82-40 4539226 YP_891272.1 CDS CFF8240_0062 NC_008599.1 48067 48615 D hypothetical protein 48067..48615 Campylobacter fetus subsp. fetus 82-40 4538318 YP_891273.1 CDS murE NC_008599.1 48596 49885 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 48596..49885 Campylobacter fetus subsp. fetus 82-40 4538810 YP_891274.1 CDS panD NC_008599.1 49905 50252 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 49905..50252 Campylobacter fetus subsp. fetus 82-40 4538981 YP_891275.1 CDS CFF8240_0065 NC_008599.1 50740 52386 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 50740..52386 Campylobacter fetus subsp. fetus 82-40 4539513 YP_891276.1 CDS CFF8240_0066 NC_008599.1 52452 52763 D identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 52452..52763 Campylobacter fetus subsp. fetus 82-40 4537975 YP_891277.1 CDS CFF8240_0067 NC_008599.1 52765 53841 D PDZ domain-containing protein 52765..53841 Campylobacter fetus subsp. fetus 82-40 4537757 YP_891278.1 CDS CFF8240_0068 NC_008599.1 53838 54671 D identified by match to protein family HMM PF00348; geranyltranstransferase 53838..54671 Campylobacter fetus subsp. fetus 82-40 4539237 YP_891279.1 CDS tkt NC_008599.1 54677 56578 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 54677..56578 Campylobacter fetus subsp. fetus 82-40 4539436 YP_891280.1 CDS CFF8240_0070 NC_008599.1 56727 58175 D NAD-linked; aldehyde dehydrogenase A 56727..58175 Campylobacter fetus subsp. fetus 82-40 4538313 YP_891281.1 CDS CFF8240_0071 NC_008599.1 58286 58486 R identified by match to protein family HMM PF04328; hypothetical protein complement(58286..58486) Campylobacter fetus subsp. fetus 82-40 4538685 YP_891282.1 CDS CFF8240_0072 NC_008599.1 58470 60548 R identified by match to protein family HMM PF02554; carbon starvation protein A complement(58470..60548) Campylobacter fetus subsp. fetus 82-40 4538361 YP_891283.1 CDS thiS NC_008599.1 60741 60941 D identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 60741..60941 Campylobacter fetus subsp. fetus 82-40 4537806 YP_891284.1 CDS thiF NC_008599.1 61168 61881 D catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 61168..61881 Campylobacter fetus subsp. fetus 82-40 4537782 YP_891285.1 CDS thiG NC_008599.1 61874 62635 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 61874..62635 Campylobacter fetus subsp. fetus 82-40 4539094 YP_891286.1 CDS thiH NC_008599.1 62657 63817 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 62657..63817 Campylobacter fetus subsp. fetus 82-40 4538734 YP_891287.1 CDS CFF8240_0077 NC_008599.1 63867 64484 R identified by match to protein family HMM PF01205; hypothetical protein complement(63867..64484) Campylobacter fetus subsp. fetus 82-40 4538425 YP_891288.1 CDS galU NC_008599.1 64560 65390 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 64560..65390 Campylobacter fetus subsp. fetus 82-40 4537875 YP_891289.1 CDS pgi NC_008599.1 65377 66582 D catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate isomerase 65377..66582 Campylobacter fetus subsp. fetus 82-40 4537989 YP_891290.1 CDS CFF8240_0080 NC_008599.1 66787 67224 D identified by match to protein family HMM PF00210; starvation-inducible DNA-binding protein Dps 66787..67224 Campylobacter fetus subsp. fetus 82-40 4538489 YP_891291.1 CDS CFF8240_0081 NC_008599.1 67285 67851 R identified by match to protein family HMM PF04264; YceI protein complement(67285..67851) Campylobacter fetus subsp. fetus 82-40 4538242 YP_891292.1 CDS CFF8240_0082 NC_008599.1 68014 68394 R HIT family protein complement(68014..68394) Campylobacter fetus subsp. fetus 82-40 4539297 YP_891293.1 CDS bioD NC_008599.1 68391 69002 R identified by match to protein family HMM TIGR00347; dethiobiotin synthase complement(68391..69002) Campylobacter fetus subsp. fetus 82-40 4538493 YP_891294.1 CDS CFF8240_0084 NC_008599.1 68999 69688 R putative biotin synthesis protein complement(68999..69688) Campylobacter fetus subsp. fetus 82-40 4537981 YP_891295.1 CDS CFF8240_0085 NC_008599.1 69678 70292 R identified by match to protein family HMM PF04301; hypothetical protein complement(69678..70292) Campylobacter fetus subsp. fetus 82-40 4539021 YP_891296.1 CDS CFF8240_0086 NC_008599.1 70273 71379 R identified by match to protein family HMM PF00155; 8-amino-7-oxononanoate synthase complement(70273..71379) Campylobacter fetus subsp. fetus 82-40 4538312 YP_891297.1 CDS CFF8240_0087 NC_008599.1 71548 71970 D hypothetical protein 71548..71970 Campylobacter fetus subsp. fetus 82-40 4538447 YP_891298.1 CDS thiL NC_008599.1 71949 72767 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 71949..72767 Campylobacter fetus subsp. fetus 82-40 4538507 YP_891299.1 CDS truD NC_008599.1 72745 73878 D catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 72745..73878 Campylobacter fetus subsp. fetus 82-40 4539272 YP_891300.1 CDS CFF8240_0090 NC_008599.1 74353 74538 R hypothetical protein complement(74353..74538) Campylobacter fetus subsp. fetus 82-40 4537766 YP_891301.1 CDS fliS NC_008599.1 74552 74941 R flagellin specific chaperone; flagellar protein FliS complement(74552..74941) Campylobacter fetus subsp. fetus 82-40 4538140 YP_891302.1 CDS CFF8240_0092 NC_008599.1 74952 76775 R Also called hook-associated protein 2; involved in flagellin assembly; flagellar capping protein complement(74952..76775) Campylobacter fetus subsp. fetus 82-40 4538921 YP_891303.1 CDS CFF8240_0093 NC_008599.1 76779 77159 R possibly involved in flagella export; flagellar protein FlaG complement(76779..77159) Campylobacter fetus subsp. fetus 82-40 4539132 YP_891304.1 CDS CFF8240_0094 NC_008599.1 77281 77628 D hypothetical protein 77281..77628 Campylobacter fetus subsp. fetus 82-40 4537960 YP_891305.1 CDS CFF8240_0095 NC_008599.1 77612 78193 D identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; putative methyltransferase 77612..78193 Campylobacter fetus subsp. fetus 82-40 4539228 YP_891306.1 CDS flgI NC_008599.1 78255 79304 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 78255..79304 Campylobacter fetus subsp. fetus 82-40 4538820 YP_891307.1 CDS CFF8240_0097 NC_008599.1 79305 79604 D hypothetical protein 79305..79604 Campylobacter fetus subsp. fetus 82-40 4538755 YP_891308.1 CDS CFF8240_0098 NC_008599.1 79661 79864 D hypothetical protein 79661..79864 Campylobacter fetus subsp. fetus 82-40 4538791 YP_891309.1 CDS CFF8240_0099 NC_008599.1 79904 80338 D hypothetical protein 79904..80338 Campylobacter fetus subsp. fetus 82-40 4537983 YP_891310.1 CDS flgK NC_008599.1 80340 82193 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 80340..82193 Campylobacter fetus subsp. fetus 82-40 4539559 YP_891311.1 CDS CFF8240_0101 NC_008599.1 82196 82972 D identified by match to protein family HMM TIGR02757; hypothetical protein 82196..82972 Campylobacter fetus subsp. fetus 82-40 4538293 YP_891312.1 CDS CFF8240_0102 NC_008599.1 83046 84413 D identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 83046..84413 Campylobacter fetus subsp. fetus 82-40 4539327 YP_891313.1 CDS CFF8240_0103 NC_008599.1 84410 85744 D identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 84410..85744 Campylobacter fetus subsp. fetus 82-40 4539350 YP_891314.1 CDS CFF8240_0104 NC_008599.1 85744 86415 D identified by match to protein family HMM PF02568; match to protein family HMM PF06508; match to protein family HMM TIGR00364; ExsB protein 85744..86415 Campylobacter fetus subsp. fetus 82-40 4538929 YP_891315.1 CDS gltX NC_008599.1 86508 87797 D charges one glutamine molecule and pairs it with tRNA(Gln); glutamylglutaminyl-tRNA synthetase 86508..87797 Campylobacter fetus subsp. fetus 82-40 4539322 YP_891316.1 CDS CFF8240_0106 NC_008599.1 87794 88093 D identified by match to protein family HMM PF02325; yggt family protein 87794..88093 Campylobacter fetus subsp. fetus 82-40 4538772 YP_891317.1 CDS CFF8240_0107 NC_008599.1 88122 89744 D identified by match to protein family HMM PF01464; lytic murein transglycosylase 88122..89744 Campylobacter fetus subsp. fetus 82-40 4539507 YP_891318.1 CDS CFF8240_0108 NC_008599.1 90318 90635 D hypothetical protein 90318..90635 Campylobacter fetus subsp. fetus 82-40 4538117 YP_891319.1 CDS CFF8240_0109 NC_008599.1 90632 91330 D hypothetical protein 90632..91330 Campylobacter fetus subsp. fetus 82-40 4538460 YP_891320.1 CDS CFF8240_0110 NC_008599.1 91330 91818 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 91330..91818 Campylobacter fetus subsp. fetus 82-40 4537857 YP_891321.1 CDS luxS NC_008599.1 91927 92427 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 91927..92427 Campylobacter fetus subsp. fetus 82-40 4538193 YP_891322.1 CDS ung NC_008599.1 92510 93208 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(92510..93208) Campylobacter fetus subsp. fetus 82-40 4539534 YP_891323.1 CDS rplT NC_008599.1 93248 93601 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(93248..93601) Campylobacter fetus subsp. fetus 82-40 4538105 YP_891324.1 CDS rpmI NC_008599.1 93688 93879 R identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 complement(93688..93879) Campylobacter fetus subsp. fetus 82-40 4538173 YP_891325.1 CDS CFF8240_0115 NC_008599.1 94054 95061 D identified by match to protein family HMM PF01547; iron ABC transporter periplasmic iron-binding protein 94054..95061 Campylobacter fetus subsp. fetus 82-40 4537767 YP_891326.1 CDS CFF8240_0116 NC_008599.1 95062 96618 D identified by match to protein family HMM PF00528; iron ABC transporter permease 95062..96618 Campylobacter fetus subsp. fetus 82-40 4537973 YP_891327.1 CDS CFF8240_0117 NC_008599.1 96645 98093 R identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system, outer membrane lipoprotein CmeC complement(96645..98093) Campylobacter fetus subsp. fetus 82-40 4537783 YP_891328.1 CDS CFF8240_0118 NC_008599.1 98086 101232 R identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915; transmembrane efflux protein complement(98086..101232) Campylobacter fetus subsp. fetus 82-40 4538720 YP_891329.1 CDS CFF8240_0119 NC_008599.1 101232 102353 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; CmeA complement(101232..102353) Campylobacter fetus subsp. fetus 82-40 4539225 YP_891330.1 CDS CFF8240_0120 NC_008599.1 102483 103112 R identified by match to protein family HMM PF00440; transcription regulator protein complement(102483..103112) Campylobacter fetus subsp. fetus 82-40 4539313 YP_891331.1 CDS ccoG NC_008599.1 103105 104508 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR02745; cytochrome c oxidase accessory protein CcoG complement(103105..104508) Campylobacter fetus subsp. fetus 82-40 4539004 YP_891332.1 CDS rpsU NC_008599.1 104666 104878 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 104666..104878 Campylobacter fetus subsp. fetus 82-40 4537866 YP_891333.1 CDS CFF8240_0123 NC_008599.1 104985 105449 R hypothetical protein complement(104985..105449) Campylobacter fetus subsp. fetus 82-40 4539003 YP_891334.1 CDS CFF8240_0124 NC_008599.1 105452 105793 R hypothetical protein complement(105452..105793) Campylobacter fetus subsp. fetus 82-40 4538236 YP_891335.1 CDS CFF8240_0125 NC_008599.1 105790 106605 R identified by match to protein family HMM PF01058; hydrogenase-Ni,Fe-hydrogenase III small subunit complement(105790..106605) Campylobacter fetus subsp. fetus 82-40 4538535 YP_891336.1 CDS CFF8240_0126 NC_008599.1 106605 107135 R electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; formate hydrogenlyase complex iron-sulfur subunit complement(106605..107135) Campylobacter fetus subsp. fetus 82-40 4539075 YP_891337.1 CDS CFF8240_0127 NC_008599.1 107132 108880 R identified by match to protein family HMM PF00329; match to protein family HMM PF00346; hydrogenase-4 subunit G complement(107132..108880) Campylobacter fetus subsp. fetus 82-40 4538086 YP_891338.1 CDS CFF8240_0128 NC_008599.1 108880 110355 R identified by match to protein family HMM PF00361; hydrogenase-4 component F complement(108880..110355) Campylobacter fetus subsp. fetus 82-40 4538614 YP_891339.1 CDS CFF8240_0130 NC_008599.1 110189 110362 D hypothetical protein 110189..110362 Campylobacter fetus subsp. fetus 82-40 4538232 YP_891340.1 CDS hyfE NC_008599.1 110359 110994 R interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide; hydrogenase 4 membrane subunit complement(110359..110994) Campylobacter fetus subsp. fetus 82-40 4538557 YP_891341.1 CDS CFF8240_0131 NC_008599.1 110996 111916 R identified by match to protein family HMM PF00146; hydrogenase-4 subunit C complement(110996..111916) Campylobacter fetus subsp. fetus 82-40 4538781 YP_891342.1 CDS CFF8240_0132 NC_008599.1 111917 113869 R identified by match to protein family HMM PF00361; hydrogenase 4 membrane subunit complement(111917..113869) Campylobacter fetus subsp. fetus 82-40 4538371 YP_891343.1 CDS CFF8240_0133 NC_008599.1 113862 114497 R identified by match to protein family HMM PF00037; hydrogenase-3 small subunit complement(113862..114497) Campylobacter fetus subsp. fetus 82-40 4538860 YP_891344.1 CDS CFF8240_0134 NC_008599.1 115037 116647 D identified by match to protein family HMM PF00221; phenylalanine and histidine ammonia-lyase 115037..116647 Campylobacter fetus subsp. fetus 82-40 4539170 YP_891345.1 CDS CFF8240_0135 NC_008599.1 116660 117826 D hypothetical protein 116660..117826 Campylobacter fetus subsp. fetus 82-40 4538660 YP_891346.1 CDS CFF8240_0136 NC_008599.1 117836 119389 D identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM TIGR01409; match to protein family HMM TIGR01813; flavocytochrome c flavin subunit 117836..119389 Campylobacter fetus subsp. fetus 82-40 4538804 YP_891347.1 CDS CFF8240_0137 NC_008599.1 119383 119775 D fumarate reductase flavoprotein subunit 119383..119775 Campylobacter fetus subsp. fetus 82-40 4538282 YP_891348.1 CDS CFF8240_0138 NC_008599.1 119785 120357 D identified by match to protein family HMM PF03264; putative tetraheme cytochrome c 119785..120357 Campylobacter fetus subsp. fetus 82-40 4539270 YP_891349.1 CDS CFF8240_0139 NC_008599.1 120366 121985 D identified by match to protein family HMM PF02518; match to protein family HMM PF02743; sensor kinase of two-component regulatory system 120366..121985 Campylobacter fetus subsp. fetus 82-40 4538509 YP_891350.1 CDS CFF8240_0140 NC_008599.1 121975 122664 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two component transcriptional regulator 121975..122664 Campylobacter fetus subsp. fetus 82-40 4538087 YP_891351.1 CDS moaC NC_008599.1 123075 123551 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 123075..123551 Campylobacter fetus subsp. fetus 82-40 4539247 YP_891352.1 CDS CFF8240_0143 NC_008599.1 123544 123807 D hypothetical protein 123544..123807 Campylobacter fetus subsp. fetus 82-40 4538134 YP_891353.1 CDS CFF8240_0144 NC_008599.1 123817 124992 D hypothetical protein 123817..124992 Campylobacter fetus subsp. fetus 82-40 4538893 YP_891354.1 CDS CFF8240_0145 NC_008599.1 125075 125524 R identified by match to protein family HMM PF04214; copper amine oxidase N-terminal protein complement(125075..125524) Campylobacter fetus subsp. fetus 82-40 4538261 YP_891355.1 CDS dcuB NC_008599.1 125622 127295 R identified by match to protein family HMM PF03605; match to protein family HMM TIGR00770; anaerobic C4-dicarboxylate membrane transporter complement(125622..127295) Campylobacter fetus subsp. fetus 82-40 4539326 YP_891356.1 CDS CFF8240_0147 NC_008599.1 127455 128423 D in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; putative transporter 127455..128423 Campylobacter fetus subsp. fetus 82-40 4539081 YP_891357.1 CDS CFF8240_0148 NC_008599.1 128431 129237 D identified by match to protein family HMM PF01435; peptidase M48, Ste24p 128431..129237 Campylobacter fetus subsp. fetus 82-40 4538688 YP_891358.1 CDS CFF8240_0149 NC_008599.1 129328 130923 R identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795; glycolate permease GlcA complement(129328..130923) Campylobacter fetus subsp. fetus 82-40 4538219 YP_891359.1 CDS CFF8240_0151 NC_008599.1 131274 132575 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; magnesium and cobalt efflux protein CorC 131274..132575 Campylobacter fetus subsp. fetus 82-40 4538286 YP_891360.1 CDS CFF8240_0150 NC_008599.1 132572 133048 R hypothetical protein complement(132572..133048) Campylobacter fetus subsp. fetus 82-40 4537931 YP_891361.1 CDS CFF8240_0156 NC_008599.1 139623 140054 D hypothetical protein 139623..140054 Campylobacter fetus subsp. fetus 82-40 4539298 YP_891362.1 CDS nuoA NC_008599.1 140447 140806 D identified by match to protein family HMM PF00507; NADH-quinone oxidoreductase, a subunit 140447..140806 Campylobacter fetus subsp. fetus 82-40 4538029 YP_891363.1 CDS CFF8240_0158 NC_008599.1 140797 141303 D identified by match to protein family HMM PF01058; match to protein family HMM TIGR01957; NADH-quinone oxidoreductase subunit B 140797..141303 Campylobacter fetus subsp. fetus 82-40 4538706 YP_891364.1 CDS CFF8240_0159 NC_008599.1 141296 142981 D identified by match to protein family HMM PF00329; match to protein family HMM PF00346; NADH-quinone oxidoreductase subunit C/D 141296..142981 Campylobacter fetus subsp. fetus 82-40 4537920 YP_891365.1 CDS CFF8240_0160 NC_008599.1 142978 143469 D identified by match to protein family HMM PF01257; hydrogenosomal NADH dehydrogenase 24 kDa subunit 142978..143469 Campylobacter fetus subsp. fetus 82-40 4538177 YP_891366.1 CDS CFF8240_0161 NC_008599.1 143456 144676 D identified by match to protein family HMM PF01512; NADH-quinone oxidoreductase subunit f 143456..144676 Campylobacter fetus subsp. fetus 82-40 4538008 YP_891367.1 CDS nuoG NC_008599.1 144676 146070 D identified by match to protein family HMM PF00111; NADH-quinone oxidoreductase subunit G 144676..146070 Campylobacter fetus subsp. fetus 82-40 4538400 YP_891368.1 CDS CFF8240_0163 NC_008599.1 146067 147344 D identified by match to protein family HMM PF00146; NAD(P)H-quinone oxidoreductase chain 1 146067..147344 Campylobacter fetus subsp. fetus 82-40 4538869 YP_891369.1 CDS CFF8240_0164 NC_008599.1 147334 147831 D identified by match to protein family HMM PF00037; NADH-ubiquinone oxidoreductase subunit 8 147334..147831 Campylobacter fetus subsp. fetus 82-40 4539360 YP_891370.1 CDS CFF8240_0165 NC_008599.1 147831 148325 D identified by match to protein family HMM PF00499; NADH-quinone oxidoreductase subunit j 147831..148325 Campylobacter fetus subsp. fetus 82-40 4537773 YP_891371.1 CDS nuoK NC_008599.1 148318 148626 D identified by match to protein family HMM PF00420; NADH-quinone oxidoreductase, k subunit 148318..148626 Campylobacter fetus subsp. fetus 82-40 4538526 YP_891372.1 CDS CFF8240_0167 NC_008599.1 148616 150427 D identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NADH-quinone oxidoreductase chain l 148616..150427 Campylobacter fetus subsp. fetus 82-40 4539526 YP_891373.1 CDS CFF8240_0168 NC_008599.1 150424 151911 D identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-quinone oxidoreductase chain m 150424..151911 Campylobacter fetus subsp. fetus 82-40 4538721 YP_891374.1 CDS CFF8240_0169 NC_008599.1 151908 153317 D identified by match to protein family HMM PF00361; proton-translocating NADH-quinone oxidoreductase, chain n 151908..153317 Campylobacter fetus subsp. fetus 82-40 4539050 YP_891375.1 CDS CFF8240_0170 NC_008599.1 153539 154294 D Co2+ ABC transporter periplasmic protein 153539..154294 Campylobacter fetus subsp. fetus 82-40 4538686 YP_891376.1 CDS CFF8240_0171 NC_008599.1 154295 154879 D catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 154295..154879 Campylobacter fetus subsp. fetus 82-40 4538077 YP_891377.1 CDS CFF8240_0172 NC_008599.1 154876 155292 D hypothetical protein 154876..155292 Campylobacter fetus subsp. fetus 82-40 4537942 YP_891378.1 CDS CFF8240_0173 NC_008599.1 155283 155936 D identified by match to protein family HMM PF02361; cobalt ABC transporter CbiQ, permease subunit 155283..155936 Campylobacter fetus subsp. fetus 82-40 4538805 YP_891379.1 CDS CFF8240_0174 NC_008599.1 155933 156586 D identified by match to protein family HMM PF00005; match to protein family HMM PF02463; cobalt transport ATP-binding protein CbiO 155933..156586 Campylobacter fetus subsp. fetus 82-40 4539066 YP_891380.1 CDS topA NC_008599.1 156701 158785 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 156701..158785 Campylobacter fetus subsp. fetus 82-40 4538255 YP_891381.1 CDS CFF8240_0176 NC_008599.1 158793 159620 D catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 158793..159620 Campylobacter fetus subsp. fetus 82-40 4539412 YP_891382.1 CDS CFF8240_0177 NC_008599.1 159601 160767 D identified by match to protein family HMM PF00999; sodium/hydrogen exchanger family protein 159601..160767 Campylobacter fetus subsp. fetus 82-40 4538636 YP_891383.1 CDS gltA NC_008599.1 160849 162126 D identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798; citrate synthase I 160849..162126 Campylobacter fetus subsp. fetus 82-40 4539477 YP_891384.1 CDS cysQ NC_008599.1 162123 162905 D identified by match to protein family HMM PF00459; 3'(2'),5'-bisphosphate nucleotidase 162123..162905 Campylobacter fetus subsp. fetus 82-40 4539364 YP_891385.1 CDS pstS NC_008599.1 163015 164037 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter substrate-binding protein 163015..164037 Campylobacter fetus subsp. fetus 82-40 4537799 YP_891386.1 CDS pstC NC_008599.1 164100 164975 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter, permease protein PstC 164100..164975 Campylobacter fetus subsp. fetus 82-40 4538658 YP_891387.1 CDS pstA NC_008599.1 164972 165811 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter, permease protein PstA 164972..165811 Campylobacter fetus subsp. fetus 82-40 4539109 YP_891388.1 CDS pstB NC_008599.1 165822 166583 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972; phosphate ABC transporter ATP-binding protein 165822..166583 Campylobacter fetus subsp. fetus 82-40 4539019 YP_891389.1 CDS CFF8240_0184 NC_008599.1 166702 167994 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; multidrug-efflux transporter 166702..167994 Campylobacter fetus subsp. fetus 82-40 4537873 YP_891390.1 CDS CFF8240_0185 NC_008599.1 168236 169870 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 168236..169870 Campylobacter fetus subsp. fetus 82-40 4539281 YP_891391.1 CDS CFF8240_0186 NC_008599.1 169898 170956 R hypothetical protein complement(169898..170956) Campylobacter fetus subsp. fetus 82-40 4538503 YP_891392.1 CDS CFF8240_0187 NC_008599.1 171105 171521 R identified by match to protein family HMM PF00583; acetyltransferase complement(171105..171521) Campylobacter fetus subsp. fetus 82-40 4539370 YP_891393.1 CDS CFF8240_0188 NC_008599.1 171518 172510 R hypothetical protein complement(171518..172510) Campylobacter fetus subsp. fetus 82-40 4538582 YP_891394.1 CDS CFF8240_0189 NC_008599.1 172582 173775 R identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin binding domain-containing protein complement(172582..173775) Campylobacter fetus subsp. fetus 82-40 4539082 YP_891395.1 CDS CFF8240_0190 NC_008599.1 173911 175884 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein complement(173911..175884) Campylobacter fetus subsp. fetus 82-40 4539358 YP_891396.1 CDS CFF8240_0191 NC_008599.1 176256 176735 R hypothetical protein complement(176256..176735) Campylobacter fetus subsp. fetus 82-40 4539097 YP_891397.1 CDS CFF8240_0192 NC_008599.1 176750 177196 R molybdopterin converting factor subunit 2 complement(176750..177196) Campylobacter fetus subsp. fetus 82-40 4538047 YP_891398.1 CDS CFF8240_0193 NC_008599.1 177198 177419 R identified by match to protein family HMM PF02597; hypothetical protein complement(177198..177419) Campylobacter fetus subsp. fetus 82-40 4538730 YP_891399.1 CDS CFF8240_0194 NC_008599.1 177457 178770 R identified by match to protein family HMM PF05670; putative fibronectin/fibrinogen-binding protein complement(177457..178770) Campylobacter fetus subsp. fetus 82-40 4539131 YP_891400.1 CDS leuC NC_008599.1 178827 180092 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 178827..180092 Campylobacter fetus subsp. fetus 82-40 4538839 YP_891401.1 CDS CFF8240_0196 NC_008599.1 180104 180646 D molybdopterin-guanine dinucleotide biosynthesis protein A 180104..180646 Campylobacter fetus subsp. fetus 82-40 4539316 YP_891402.1 CDS CFF8240_0197 NC_008599.1 180643 181665 D identified by match to protein family HMM PF02253; phospholipase A 180643..181665 Campylobacter fetus subsp. fetus 82-40 4538080 YP_891403.1 CDS CFF8240_0198 NC_008599.1 181706 182422 R hypothetical protein complement(181706..182422) Campylobacter fetus subsp. fetus 82-40 4538473 YP_891404.1 CDS CFF8240_0199 NC_008599.1 182436 182714 R hypothetical protein complement(182436..182714) Campylobacter fetus subsp. fetus 82-40 4539544 YP_891405.1 CDS eno NC_008599.1 182711 183961 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(182711..183961) Campylobacter fetus subsp. fetus 82-40 4537923 YP_891406.1 CDS recA NC_008599.1 183961 184998 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(183961..184998) Campylobacter fetus subsp. fetus 82-40 4538850 YP_891407.1 CDS CFF8240_0202 NC_008599.1 185099 185965 D identified by match to protein family HMM PF02642; hypothetical protein 185099..185965 Campylobacter fetus subsp. fetus 82-40 4538088 YP_891408.1 CDS fliQ NC_008599.1 185965 186231 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 185965..186231 Campylobacter fetus subsp. fetus 82-40 4538936 YP_891409.1 CDS murB NC_008599.1 186228 186989 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 186228..186989 Campylobacter fetus subsp. fetus 82-40 4538898 YP_891410.1 CDS CFF8240_0206 NC_008599.1 187151 187285 D hypothetical protein 187151..187285 Campylobacter fetus subsp. fetus 82-40 4538517 YP_891411.1 CDS CFF8240_0207 NC_008599.1 187304 187633 D hypothetical protein 187304..187633 Campylobacter fetus subsp. fetus 82-40 4539049 YP_891412.1 CDS CFF8240_0208 NC_008599.1 187638 187955 D hypothetical protein 187638..187955 Campylobacter fetus subsp. fetus 82-40 4538880 YP_891413.1 CDS cdsA NC_008599.1 188012 188755 D identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 188012..188755 Campylobacter fetus subsp. fetus 82-40 4538202 YP_891414.1 CDS dxr NC_008599.1 188752 189834 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 188752..189834 Campylobacter fetus subsp. fetus 82-40 4539309 YP_891415.1 CDS CFF8240_0211 NC_008599.1 189834 190466 D identified by match to protein family HMM PF03352; DNA-3-methyladenine glycosylase 189834..190466 Campylobacter fetus subsp. fetus 82-40 4538826 YP_891416.1 CDS uraA NC_008599.1 190456 191709 D identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease 190456..191709 Campylobacter fetus subsp. fetus 82-40 4537868 YP_891417.1 CDS CFF8240_0213 NC_008599.1 191713 192450 D identified by match to protein family HMM PF02557; match to protein family HMM TIGR01409; twin-arginine translocation pathway signal sequence domain-containing protein 191713..192450 Campylobacter fetus subsp. fetus 82-40 4538497 YP_891418.1 CDS CFF8240_0214 NC_008599.1 192464 193783 D hypothetical protein 192464..193783 Campylobacter fetus subsp. fetus 82-40 4538099 YP_891419.1 CDS CFF8240_0215 NC_008599.1 193780 194787 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 193780..194787 Campylobacter fetus subsp. fetus 82-40 4538347 YP_891420.1 CDS CFF8240_0217 NC_008599.1 194850 197186 D hypothetical protein 194850..197186 Campylobacter fetus subsp. fetus 82-40 4538547 YP_891421.1 CDS miaA NC_008599.1 197181 198083 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(197181..198083) Campylobacter fetus subsp. fetus 82-40 4538782 YP_891422.1 CDS ubiA NC_008599.1 198168 199037 D UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 198168..199037 Campylobacter fetus subsp. fetus 82-40 4539320 YP_891423.1 CDS CFF8240_0219 NC_008599.1 199085 199534 D hypothetical protein 199085..199534 Campylobacter fetus subsp. fetus 82-40 4538041 YP_891424.1 CDS CFF8240_0220 NC_008599.1 199527 200051 D hypothetical protein 199527..200051 Campylobacter fetus subsp. fetus 82-40 4537997 YP_891425.1 CDS moaA NC_008599.1 200051 201019 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 200051..201019 Campylobacter fetus subsp. fetus 82-40 4538612 YP_891426.1 CDS CFF8240_0222 NC_008599.1 201019 201744 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 201019..201744 Campylobacter fetus subsp. fetus 82-40 4538914 YP_891427.1 CDS CFF8240_0223 NC_008599.1 201818 202966 R identified by match to protein family HMM PF00465; iron-containing alcohol dehydrogenase complement(201818..202966) Campylobacter fetus subsp. fetus 82-40 4539409 YP_891428.1 CDS CFF8240_0224 NC_008599.1 203060 203641 D putative 6-pyruvoyl tetrahydrobiopterin synthase 203060..203641 Campylobacter fetus subsp. fetus 82-40 4538625 YP_891429.1 CDS CFF8240_0225 NC_008599.1 203641 203820 D hypothetical protein 203641..203820 Campylobacter fetus subsp. fetus 82-40 4538139 YP_891430.1 CDS CFF8240_0226 NC_008599.1 203827 204234 D hypothetical protein 203827..204234 Campylobacter fetus subsp. fetus 82-40 4539500 YP_891431.1 CDS CFF8240_0227 NC_008599.1 204231 204884 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 204231..204884 Campylobacter fetus subsp. fetus 82-40 4538797 YP_891432.1 CDS CFF8240_0228 NC_008599.1 204886 205212 D hypothetical protein 204886..205212 Campylobacter fetus subsp. fetus 82-40 4538649 YP_891433.1 CDS CFF8240_0229 NC_008599.1 205190 207817 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 205190..207817 Campylobacter fetus subsp. fetus 82-40 4538600 YP_891434.1 CDS CFF8240_0230 NC_008599.1 207889 208659 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 207889..208659 Campylobacter fetus subsp. fetus 82-40 4538470 YP_891435.1 CDS motB NC_008599.1 208668 209384 D with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 208668..209384 Campylobacter fetus subsp. fetus 82-40 4538719 YP_891436.1 CDS CFF8240_0232 NC_008599.1 209521 209802 D identified by match to protein family HMM PF00037; ferredoxin, 4Fe-4S 209521..209802 Campylobacter fetus subsp. fetus 82-40 4538299 YP_891437.1 CDS ndk NC_008599.1 209906 210319 D identified by match to protein family HMM PF00334; nucleoside diphosphate kinase 209906..210319 Campylobacter fetus subsp. fetus 82-40 4537758 YP_891438.1 CDS CFF8240_0234 NC_008599.1 210335 210700 D hypothetical protein 210335..210700 Campylobacter fetus subsp. fetus 82-40 4539311 YP_891439.1 CDS rpmF NC_008599.1 210702 210848 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 210702..210848 Campylobacter fetus subsp. fetus 82-40 4537881 YP_891440.1 CDS plsX NC_008599.1 210858 211847 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 210858..211847 Campylobacter fetus subsp. fetus 82-40 4539514 YP_891441.1 CDS CFF8240_0237 NC_008599.1 211855 212841 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 211855..212841 Campylobacter fetus subsp. fetus 82-40 4538111 YP_891442.1 CDS CFF8240_0238 NC_008599.1 212915 214042 D hypothetical protein 212915..214042 Campylobacter fetus subsp. fetus 82-40 4538500 YP_891443.1 CDS CFF8240_0239 NC_008599.1 214039 216243 D hypothetical protein 214039..216243 Campylobacter fetus subsp. fetus 82-40 4539279 YP_891444.1 CDS CFF8240_0240 NC_008599.1 216253 216870 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 216253..216870 Campylobacter fetus subsp. fetus 82-40 4539342 YP_891445.1 CDS CFF8240_0241 NC_008599.1 216867 217184 D FolB domain-containing protein 216867..217184 Campylobacter fetus subsp. fetus 82-40 4538551 YP_891446.1 CDS CFF8240_0242 NC_008599.1 217263 217934 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; two-component regulator 217263..217934 Campylobacter fetus subsp. fetus 82-40 4539543 YP_891447.1 CDS CFF8240_0243 NC_008599.1 217997 219238 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; histidine kinase 217997..219238 Campylobacter fetus subsp. fetus 82-40 4537910 YP_891448.1 CDS CFF8240_0244 NC_008599.1 219285 219536 D identified by match to protein family HMM PF00037; ferredoxin 219285..219536 Campylobacter fetus subsp. fetus 82-40 4539099 YP_891449.1 CDS CFF8240_0245 NC_008599.1 219536 221014 D identified by match to protein family HMM PF02541; phosphatase 219536..221014 Campylobacter fetus subsp. fetus 82-40 4539332 YP_891450.1 CDS CFF8240_0246 NC_008599.1 221015 221629 R putative recombination protein RecO complement(221015..221629) Campylobacter fetus subsp. fetus 82-40 4538097 YP_891451.1 CDS CFF8240_0247 NC_008599.1 221631 222551 R identified by match to protein family HMM PF01207; tRNA-dihydrouridine synthase B complement(221631..222551) Campylobacter fetus subsp. fetus 82-40 4538759 YP_891452.1 CDS CFF8240_0248 NC_008599.1 222548 223552 R hypothetical protein complement(222548..223552) Campylobacter fetus subsp. fetus 82-40 4538069 YP_891453.1 CDS CFF8240_0249 NC_008599.1 223549 223917 R identified by match to protein family HMM PF01258; TraR/DksA family transcriptional regulator complement(223549..223917) Campylobacter fetus subsp. fetus 82-40 4538143 YP_891454.1 CDS CFF8240_0250 NC_008599.1 223927 224376 R similar to jhp_0883; identified by match to protein family HMM PF02590; hypothetical protein complement(223927..224376) Campylobacter fetus subsp. fetus 82-40 4538252 YP_891455.1 CDS accD NC_008599.1 224376 225257 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(224376..225257) Campylobacter fetus subsp. fetus 82-40 4538729 YP_891456.1 CDS CFF8240_0252 NC_008599.1 225491 226087 D identified by match to protein family HMM PF00578; alkyl hydroperoxide reductase TsaA 225491..226087 Campylobacter fetus subsp. fetus 82-40 4538433 YP_891457.1 CDS CFF8240_0253 NC_008599.1 226208 226594 D hypothetical protein 226208..226594 Campylobacter fetus subsp. fetus 82-40 4538737 YP_891458.1 CDS serC NC_008599.1 226724 227803 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(226724..227803) Campylobacter fetus subsp. fetus 82-40 4539240 YP_891459.1 CDS xseA NC_008599.1 227815 228978 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(227815..228978) Campylobacter fetus subsp. fetus 82-40 4538074 YP_891460.1 CDS ubiE NC_008599.1 228975 229691 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(228975..229691) Campylobacter fetus subsp. fetus 82-40 4538676 YP_891461.1 CDS CFF8240_0257 NC_008599.1 229692 231080 R hypothetical protein complement(229692..231080) Campylobacter fetus subsp. fetus 82-40 4538798 YP_891462.1 CDS CFF8240_0258 NC_008599.1 231256 232533 R identified by match to protein family HMM PF07158; putative integral membrane protein complement(231256..232533) Campylobacter fetus subsp. fetus 82-40 4538326 YP_891463.1 CDS CFF8240_0259 NC_008599.1 232870 233853 D secretion protein HlyD 232870..233853 Campylobacter fetus subsp. fetus 82-40 4539127 YP_891464.1 CDS CFF8240_0260 NC_008599.1 233837 235492 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 233837..235492 Campylobacter fetus subsp. fetus 82-40 4538847 YP_891465.1 CDS CFF8240_0261 NC_008599.1 235482 236555 D identified by match to protein family HMM PF01061; ABC transporter permease 235482..236555 Campylobacter fetus subsp. fetus 82-40 4539169 YP_891466.1 CDS CFF8240_0262 NC_008599.1 236552 237610 D identified by match to protein family HMM PF01061; ABC-type multidrug transport system permease component 236552..237610 Campylobacter fetus subsp. fetus 82-40 4537980 YP_891467.1 CDS CFF8240_0263 NC_008599.1 237629 238045 R identified by match to protein family HMM PF01475; FUR family transcriptional regulator complement(237629..238045) Campylobacter fetus subsp. fetus 82-40 4538367 YP_891468.1 CDS dxs NC_008599.1 238128 239930 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(238128..239930) Campylobacter fetus subsp. fetus 82-40 4539487 YP_891469.1 CDS fliH NC_008599.1 239934 240731 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(239934..240731) Campylobacter fetus subsp. fetus 82-40 4538796 YP_891470.1 CDS fliG NC_008599.1 240728 241756 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(240728..241756) Campylobacter fetus subsp. fetus 82-40 4538722 YP_891471.1 CDS fliF NC_008599.1 241756 243462 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(241756..243462) Campylobacter fetus subsp. fetus 82-40 4538405 YP_891472.1 CDS hisC NC_008599.1 243469 244569 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(243469..244569) Campylobacter fetus subsp. fetus 82-40 4538652 YP_891473.1 CDS pheA NC_008599.1 244572 245648 R identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807; chorismate mutase/prephenate dehydratase complement(244572..245648) Campylobacter fetus subsp. fetus 82-40 4539458 YP_891474.1 CDS CFF8240_0270 NC_008599.1 245635 246414 R identified by match to protein family HMM TIGR01460; HAD family hydrolase complement(245635..246414) Campylobacter fetus subsp. fetus 82-40 4539111 YP_891475.1 CDS lysA NC_008599.1 246414 247625 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase complement(246414..247625) Campylobacter fetus subsp. fetus 82-40 4538624 YP_891476.1 CDS CFF8240_0272 NC_008599.1 247838 248899 R identified by match to protein family HMM PF03739; permease YjgP/YjgQ complement(247838..248899) Campylobacter fetus subsp. fetus 82-40 4539561 YP_891477.1 CDS CFF8240_0273 NC_008599.1 249015 249662 D hypothetical protein 249015..249662 Campylobacter fetus subsp. fetus 82-40 4539265 YP_891478.1 CDS CFF8240_0274 NC_008599.1 249711 250325 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 249711..250325 Campylobacter fetus subsp. fetus 82-40 4538153 YP_891479.1 CDS CFF8240_0277 NC_008599.1 252665 253612 D identified by match to protein family HMM PF00296; luciferase-alpha subunit 252665..253612 Campylobacter fetus subsp. fetus 82-40 4539239 YP_891480.1 CDS CFF8240_0278 NC_008599.1 253623 254618 D identified by match to protein family HMM PF01497; periplasmic binding family protein 253623..254618 Campylobacter fetus subsp. fetus 82-40 4538419 YP_891481.1 CDS CFF8240_0279 NC_008599.1 254605 255585 D identified by match to protein family HMM PF00950; match to protein family HMM PF01032; ABC transporter permease 254605..255585 Campylobacter fetus subsp. fetus 82-40 4538231 YP_891482.1 CDS CFF8240_0280 NC_008599.1 255582 256310 D identified by match to protein family HMM PF00005; iron chelate ABC transporter ATP-binding protein 255582..256310 Campylobacter fetus subsp. fetus 82-40 4538102 YP_891483.1 CDS CFF8240_0281 NC_008599.1 256307 257098 D hypothetical protein 256307..257098 Campylobacter fetus subsp. fetus 82-40 4539173 YP_891484.1 CDS exbB NC_008599.1 257109 257537 D identified by match to protein family HMM PF01618; match to protein family HMM TIGR02805; TonB-system energizer ExbB 257109..257537 Campylobacter fetus subsp. fetus 82-40 4538595 YP_891485.1 CDS expD NC_008599.1 257534 257914 D identified by match to protein family HMM PF02472; match to protein family HMM TIGR02804; TonB system transport protein ExbD 257534..257914 Campylobacter fetus subsp. fetus 82-40 4538167 YP_891486.1 CDS CFF8240_0284 NC_008599.1 257922 258674 D identified by match to protein family HMM TIGR01352; TonB family protein 257922..258674 Campylobacter fetus subsp. fetus 82-40 4538063 YP_891487.1 CDS lys NC_008599.1 258856 260070 D identified by match to protein family HMM PF03435; saccharopine dehydrogenase 258856..260070 Campylobacter fetus subsp. fetus 82-40 4539128 YP_891488.1 CDS CFF8240_0286 NC_008599.1 260067 260327 D hypothetical protein 260067..260327 Campylobacter fetus subsp. fetus 82-40 4538843 YP_891489.1 CDS rpmE NC_008599.1 260388 260588 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 260388..260588 Campylobacter fetus subsp. fetus 82-40 4539312 YP_891490.1 CDS CFF8240_0288 NC_008599.1 260593 261408 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 260593..261408 Campylobacter fetus subsp. fetus 82-40 4538871 YP_891491.1 CDS CFF8240_0289 NC_008599.1 261445 262125 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 261445..262125 Campylobacter fetus subsp. fetus 82-40 4539027 YP_891492.1 CDS CFF8240_0290 NC_008599.1 262205 263044 D hypothetical protein 262205..263044 Campylobacter fetus subsp. fetus 82-40 4538543 YP_891493.1 CDS CFF8240_0291 NC_008599.1 263038 263856 D hypothetical protein 263038..263856 Campylobacter fetus subsp. fetus 82-40 4539252 YP_891494.1 CDS CFF8240_0292 NC_008599.1 263866 265074 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 263866..265074 Campylobacter fetus subsp. fetus 82-40 4539095 YP_891495.1 CDS CFF8240_0293 NC_008599.1 265071 266339 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 265071..266339 Campylobacter fetus subsp. fetus 82-40 4539072 YP_891496.1 CDS CFF8240_0294 NC_008599.1 266341 266679 D similar to jhp_0762; identified by match to protein family HMM PF02021; hypothetical protein 266341..266679 Campylobacter fetus subsp. fetus 82-40 4538485 YP_891497.1 CDS trx NC_008599.1 266752 267066 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 266752..267066 Campylobacter fetus subsp. fetus 82-40 4538775 YP_891498.1 CDS trxB NC_008599.1 267184 268128 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 267184..268128 Campylobacter fetus subsp. fetus 82-40 4538813 YP_891499.1 CDS CFF8240_0297 NC_008599.1 268220 268999 D hypothetical protein 268220..268999 Campylobacter fetus subsp. fetus 82-40 4538170 YP_891500.1 CDS dapB NC_008599.1 269194 269958 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 269194..269958 Campylobacter fetus subsp. fetus 82-40 4538330 YP_891501.1 CDS purF NC_008599.1 269960 271300 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 269960..271300 Campylobacter fetus subsp. fetus 82-40 4538412 YP_891502.1 CDS CFF8240_0300 NC_008599.1 271359 271892 R hypothetical protein complement(271359..271892) Campylobacter fetus subsp. fetus 82-40 4538574 YP_891503.1 CDS CFF8240_0301 NC_008599.1 271892 272332 R putative integral membrane protein complement(271892..272332) Campylobacter fetus subsp. fetus 82-40 4538913 YP_891504.1 CDS hisIE NC_008599.1 272409 273140 R identified by match to protein family HMM PF01502; match to protein family HMM PF01503; phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP cyclohydrolase complement(272409..273140) Campylobacter fetus subsp. fetus 82-40 4539178 YP_891505.1 CDS CFF8240_0303 NC_008599.1 273150 274244 R identified by match to protein family HMM PF01145; SPFH domain-containing protein complement(273150..274244) Campylobacter fetus subsp. fetus 82-40 4537900 YP_891506.1 CDS ilvE NC_008599.1 274262 275185 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(274262..275185) Campylobacter fetus subsp. fetus 82-40 4539435 YP_891507.1 CDS CFF8240_0305 NC_008599.1 275268 275528 R identified by match to protein family HMM PF01381; XRE family transcriptional regulator complement(275268..275528) Campylobacter fetus subsp. fetus 82-40 4538038 YP_891508.1 CDS CFF8240_0306 NC_008599.1 275618 275875 D hypothetical protein 275618..275875 Campylobacter fetus subsp. fetus 82-40 4539532 YP_891509.1 CDS CFF8240_0307 NC_008599.1 275883 276281 D hypothetical protein 275883..276281 Campylobacter fetus subsp. fetus 82-40 4538849 YP_891510.1 CDS CFF8240_0308 NC_008599.1 276283 276510 D hypothetical protein 276283..276510 Campylobacter fetus subsp. fetus 82-40 4538633 YP_891511.1 CDS CFF8240_0309 NC_008599.1 276512 277018 D hypothetical protein 276512..277018 Campylobacter fetus subsp. fetus 82-40 4538499 YP_891512.1 CDS CFF8240_0310 NC_008599.1 277158 277358 D identified by match to protein family HMM PF01361; hypothetical protein 277158..277358 Campylobacter fetus subsp. fetus 82-40 4539204 YP_891513.1 CDS CFF8240_0311 NC_008599.1 277359 277919 D identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 277359..277919 Campylobacter fetus subsp. fetus 82-40 4537790 YP_891514.1 CDS CFF8240_0312 NC_008599.1 277996 281064 R identified by match to protein family HMM PF05359; hypothetical protein complement(277996..281064) Campylobacter fetus subsp. fetus 82-40 4538032 YP_891515.1 CDS CFF8240_0313 NC_008599.1 281169 282236 D identified by match to protein family HMM PF02677; hypothetical protein 281169..282236 Campylobacter fetus subsp. fetus 82-40 4539136 YP_891516.1 CDS fabZ NC_008599.1 282842 283330 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 282842..283330 Campylobacter fetus subsp. fetus 82-40 4539255 YP_891517.1 CDS lpxA NC_008599.1 283340 284125 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 283340..284125 Campylobacter fetus subsp. fetus 82-40 4538123 YP_891518.1 CDS clpX NC_008599.1 284125 285345 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 284125..285345 Campylobacter fetus subsp. fetus 82-40 4538067 YP_891519.1 CDS mreB NC_008599.1 285359 286396 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 285359..286396 Campylobacter fetus subsp. fetus 82-40 4538341 YP_891520.1 CDS CFF8240_0318 NC_008599.1 286434 287138 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 286434..287138 Campylobacter fetus subsp. fetus 82-40 4538534 YP_891521.1 CDS carB NC_008599.1 287138 290392 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 287138..290392 Campylobacter fetus subsp. fetus 82-40 4538531 YP_891522.1 CDS CFF8240_0320 NC_008599.1 290389 291228 D identified by match to protein family HMM PF01729; molybdenum transport system protein ModD 290389..291228 Campylobacter fetus subsp. fetus 82-40 4538525 YP_891523.1 CDS CFF8240_0321 NC_008599.1 291225 291647 D hypothetical protein 291225..291647 Campylobacter fetus subsp. fetus 82-40 4538962 YP_891524.1 CDS CFF8240_0322 NC_008599.1 291749 293047 D identified by match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 291749..293047 Campylobacter fetus subsp. fetus 82-40 4538647 YP_891525.1 CDS CFF8240_0323 NC_008599.1 293074 293958 R hypothetical protein complement(293074..293958) Campylobacter fetus subsp. fetus 82-40 4539235 YP_891526.1 CDS CFF8240_0324 NC_008599.1 293951 294598 R identified by match to protein family HMM PF00899; MoeB/thiF family protein complement(293951..294598) Campylobacter fetus subsp. fetus 82-40 4539148 YP_891527.1 CDS surE NC_008599.1 294601 295371 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(294601..295371) Campylobacter fetus subsp. fetus 82-40 4538156 YP_891528.1 CDS lpxB NC_008599.1 295450 296481 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; ipid-A-disaccharide synthase 295450..296481 Campylobacter fetus subsp. fetus 82-40 4538516 YP_891529.1 CDS greA NC_008599.1 296518 297003 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 296518..297003 Campylobacter fetus subsp. fetus 82-40 4539206 YP_891530.1 CDS argC NC_008599.1 297012 298040 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 297012..298040 Campylobacter fetus subsp. fetus 82-40 4539023 YP_891531.1 CDS CFF8240_0329 NC_008599.1 298037 298756 D metallophosphoesterase 298037..298756 Campylobacter fetus subsp. fetus 82-40 4538934 YP_891532.1 CDS CFF8240_0330 NC_008599.1 298749 299705 D identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV 298749..299705 Campylobacter fetus subsp. fetus 82-40 4539243 YP_891533.1 CDS CFF8240_0331 NC_008599.1 299716 302028 D identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis histidine kinase 299716..302028 Campylobacter fetus subsp. fetus 82-40 4539306 YP_891534.1 CDS CFF8240_0332 NC_008599.1 302038 302535 D identified by match to protein family HMM PF01584; purine-binding chemotaxis protein CheW 302038..302535 Campylobacter fetus subsp. fetus 82-40 4537768 YP_891535.1 CDS serB NC_008599.1 302544 303167 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB 302544..303167 Campylobacter fetus subsp. fetus 82-40 4539303 YP_891536.1 CDS tal NC_008599.1 303180 304175 D Important for the balance of metabolites in the pentose-phosphate pathway; transaldolase 303180..304175 Campylobacter fetus subsp. fetus 82-40 4538317 YP_891537.1 CDS pilT NC_008599.1 304185 305381 D identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilT 304185..305381 Campylobacter fetus subsp. fetus 82-40 4538954 YP_891538.1 CDS CFF8240_0336 NC_008599.1 305442 305978 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 305442..305978 Campylobacter fetus subsp. fetus 82-40 4537985 YP_891539.1 CDS pth NC_008599.1 305978 306523 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 305978..306523 Campylobacter fetus subsp. fetus 82-40 4538718 YP_891540.1 CDS nspC NC_008599.1 306597 307730 D identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047; carboxynorspermidine decarboxylase 306597..307730 Campylobacter fetus subsp. fetus 82-40 4539208 YP_891541.1 CDS CFF8240_0339 NC_008599.1 307814 308413 D identified by match to protein family HMM PF01206; hypothetical protein 307814..308413 Campylobacter fetus subsp. fetus 82-40 4538740 YP_891542.1 CDS selD NC_008599.1 308472 309425 D identified by match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase 308472..309425 Campylobacter fetus subsp. fetus 82-40 4539018 YP_891543.1 CDS CFF8240_0341 NC_008599.1 309435 310061 D identified by match to protein family HMM PF00881; nitroreductase family protein 309435..310061 Campylobacter fetus subsp. fetus 82-40 4538659 YP_891544.1 CDS flhB NC_008599.1 310072 311145 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 310072..311145 Campylobacter fetus subsp. fetus 82-40 4538585 YP_891545.1 CDS nhaA NC_008599.1 311191 312363 R identified by match to protein family HMM PF00999; match to protein family HMM PF06965; match to protein family HMM TIGR00773; Na+/H+ antiporter NhaA complement(311191..312363) Campylobacter fetus subsp. fetus 82-40 4538548 YP_891546.1 CDS uvrA NC_008599.1 312717 315548 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(312717..315548) Campylobacter fetus subsp. fetus 82-40 4538289 YP_891547.1 CDS CFF8240_0345 NC_008599.1 315552 315668 D hypothetical protein 315552..315668 Campylobacter fetus subsp. fetus 82-40 4538272 YP_891548.1 CDS CFF8240_0346 NC_008599.1 315785 317443 D identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; sodium-dependent transporter 315785..317443 Campylobacter fetus subsp. fetus 82-40 4538800 YP_891549.1 CDS CFF8240_0347 NC_008599.1 317466 318209 R identified by match to protein family HMM PF01925; hypothetical protein complement(317466..318209) Campylobacter fetus subsp. fetus 82-40 4538994 YP_891550.1 CDS CFF8240_0348 NC_008599.1 318231 318959 R identified by match to protein family HMM PF01925; hypothetical protein complement(318231..318959) Campylobacter fetus subsp. fetus 82-40 4538751 YP_891551.1 CDS CFF8240_0349 NC_008599.1 319021 319527 D identified by match to protein family HMM PF03625; hypothetical protein 319021..319527 Campylobacter fetus subsp. fetus 82-40 4537828 YP_891552.1 CDS CFF8240_0350 NC_008599.1 319719 320978 D identified by match to protein family HMM PF00425; anthranilate synthase component 1 319719..320978 Campylobacter fetus subsp. fetus 82-40 4539476 YP_891553.1 CDS CFF8240_0351 NC_008599.1 320975 322570 D identified by match to protein family HMM PF00117; match to protein family HMM PF00591; match to protein family HMM TIGR00566; match to protein family HMM TIGR01245; anthranilate synthase component II 320975..322570 Campylobacter fetus subsp. fetus 82-40 4539006 YP_891554.1 CDS trpF NC_008599.1 322567 323172 D identified by match to protein family HMM PF00697; N-(5'phosphoribosyl)anthranilate isomerase 322567..323172 Campylobacter fetus subsp. fetus 82-40 4539134 YP_891555.1 CDS trpB NC_008599.1 323169 324350 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 323169..324350 Campylobacter fetus subsp. fetus 82-40 4538523 YP_891556.1 CDS trpA NC_008599.1 324343 325092 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 324343..325092 Campylobacter fetus subsp. fetus 82-40 4539218 YP_891557.1 CDS CFF8240_0355 NC_008599.1 325241 325660 D hypothetical protein 325241..325660 Campylobacter fetus subsp. fetus 82-40 4537825 YP_891558.1 CDS fliN NC_008599.1 325657 325962 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 325657..325962 Campylobacter fetus subsp. fetus 82-40 4538876 YP_891559.1 CDS CFF8240_0357 NC_008599.1 325959 326906 D hypothetical protein 325959..326906 Campylobacter fetus subsp. fetus 82-40 4538544 YP_891560.1 CDS CFF8240_0358 NC_008599.1 326946 327515 R hypothetical protein complement(326946..327515) Campylobacter fetus subsp. fetus 82-40 4538817 YP_891561.1 CDS modB NC_008599.1 327541 328206 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141; molybdate ABC transporter permease complement(327541..328206) Campylobacter fetus subsp. fetus 82-40 4538040 YP_891562.1 CDS CFF8240_0360 NC_008599.1 328203 329054 R identified by match to protein family HMM PF00005; molybdenum transport ATP-binding protein complement(328203..329054) Campylobacter fetus subsp. fetus 82-40 4538615 YP_891563.1 CDS CFF8240_0361 NC_008599.1 329051 329425 R hypothetical protein complement(329051..329425) Campylobacter fetus subsp. fetus 82-40 4538917 YP_891564.1 CDS modA NC_008599.1 329425 330165 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdate ABC transporter periplasmic molybdate-binding protein complement(329425..330165) Campylobacter fetus subsp. fetus 82-40 4538120 YP_891565.1 CDS CFF8240_0363 NC_008599.1 330309 331100 R identified by match to protein family HMM PF00126; match to protein family HMM PF03459; match to protein family HMM TIGR00638; ModE family transcriptional regulator complement(330309..331100) Campylobacter fetus subsp. fetus 82-40 4538463 YP_891566.1 CDS CFF8240_0364 NC_008599.1 331264 331977 D identified by match to protein family HMM PF04333; VacJ family lipoprotein 331264..331977 Campylobacter fetus subsp. fetus 82-40 4537990 YP_891567.1 CDS ttg2D NC_008599.1 331980 332579 D identified by match to protein family HMM PF05494; toluene tolerance protein Ttg2D 331980..332579 Campylobacter fetus subsp. fetus 82-40 4537874 YP_891568.1 CDS CFF8240_0367 NC_008599.1 332579 335044 D putative integral membrane protein 332579..335044 Campylobacter fetus subsp. fetus 82-40 4539242 YP_891569.1 CDS CFF8240_0366 NC_008599.1 335017 335592 R identified by match to protein family HMM PF04972; transport-associated complement(335017..335592) Campylobacter fetus subsp. fetus 82-40 4538603 YP_891570.1 CDS CFF8240_0368 NC_008599.1 335852 339979 D identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor 335852..339979 Campylobacter fetus subsp. fetus 82-40 4539124 YP_891571.1 CDS hisZ NC_008599.1 339982 340833 D May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 339982..340833 Campylobacter fetus subsp. fetus 82-40 4539290 YP_891572.1 CDS purA NC_008599.1 340844 342094 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 340844..342094 Campylobacter fetus subsp. fetus 82-40 4538435 YP_891573.1 CDS CFF8240_0371 NC_008599.1 342091 342516 D hypothetical protein 342091..342516 Campylobacter fetus subsp. fetus 82-40 4538979 YP_891574.1 CDS CFF8240_0372 NC_008599.1 342513 343046 D pdp protein 342513..343046 Campylobacter fetus subsp. fetus 82-40 4539501 YP_891575.1 CDS CFF8240_0373 NC_008599.1 343173 343724 D identified by match to protein family HMM PF04368; hypothetical protein 343173..343724 Campylobacter fetus subsp. fetus 82-40 4538141 YP_891576.1 CDS carA NC_008599.1 343724 344842 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 343724..344842 Campylobacter fetus subsp. fetus 82-40 4539159 YP_891577.1 CDS CFF8240_0375 NC_008599.1 344842 345507 D hypothetical protein 344842..345507 Campylobacter fetus subsp. fetus 82-40 4538060 YP_891578.1 CDS CFF8240_0376 NC_008599.1 345504 346742 D identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; PAS/PAC sensor signal transduction histidine kinase 345504..346742 Campylobacter fetus subsp. fetus 82-40 4538867 YP_891579.1 CDS CFF8240_0377 NC_008599.1 346735 347415 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 346735..347415 Campylobacter fetus subsp. fetus 82-40 4538409 YP_891580.1 CDS ccoN NC_008599.1 347572 349041 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 347572..349041 Campylobacter fetus subsp. fetus 82-40 4538281 YP_891581.1 CDS ccoO NC_008599.1 349052 349717 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 349052..349717 Campylobacter fetus subsp. fetus 82-40 4538766 YP_891582.1 CDS CFF8240_0380 NC_008599.1 349728 349958 D identified by match to protein family HMM TIGR02736; cytochrome c oxidase, Cbb3-type, CcoQ subunit 349728..349958 Campylobacter fetus subsp. fetus 82-40 4539026 YP_891583.1 CDS ccoP NC_008599.1 349955 350818 D identified by match to protein family HMM PF00034; match to protein family HMM TIGR00782; cytochrome c oxidase, Cbb3-type, subunit III 349955..350818 Campylobacter fetus subsp. fetus 82-40 4538768 YP_891584.1 CDS CFF8240_0382 NC_008599.1 350820 351038 D hypothetical protein 350820..351038 Campylobacter fetus subsp. fetus 82-40 4538052 YP_891585.1 CDS CFF8240_0383 NC_008599.1 351154 351738 D hypothetical protein 351154..351738 Campylobacter fetus subsp. fetus 82-40 4539433 YP_891586.1 CDS CFF8240_0384 NC_008599.1 351742 352275 D putative lipoprotein 351742..352275 Campylobacter fetus subsp. fetus 82-40 4537986 YP_891587.1 CDS CFF8240_0385 NC_008599.1 352256 354616 D hypothetical protein 352256..354616 Campylobacter fetus subsp. fetus 82-40 4539035 YP_891588.1 CDS CFF8240_0386 NC_008599.1 354613 357378 D identified by match to protein family HMM PF00580; putative recombination protein RecB 354613..357378 Campylobacter fetus subsp. fetus 82-40 4538841 YP_891589.1 CDS rplM NC_008599.1 357457 357882 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 357457..357882 Campylobacter fetus subsp. fetus 82-40 4538155 YP_891590.1 CDS rpsI NC_008599.1 357885 358274 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 357885..358274 Campylobacter fetus subsp. fetus 82-40 4539354 YP_891591.1 CDS CFF8240_0389 NC_008599.1 358574 359611 D identified by match to protein family HMM PF00691; outer membrane fibronectin-binding protein 358574..359611 Campylobacter fetus subsp. fetus 82-40 4537959 YP_891592.1 CDS CFF8240_0390 NC_008599.1 359617 360441 D identified by match to protein family HMM PF00924; MscS mechanosensitive ion channel 359617..360441 Campylobacter fetus subsp. fetus 82-40 4538259 YP_891593.1 CDS CFF8240_0391 NC_008599.1 360450 361100 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; phosphoglycolate phosphatase 360450..361100 Campylobacter fetus subsp. fetus 82-40 4537972 YP_891594.1 CDS nifJ NC_008599.1 361290 364844 D identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate:ferredoxin (flavodoxin) oxidoreductase 361290..364844 Campylobacter fetus subsp. fetus 82-40 4537872 YP_891595.1 CDS CFF8240_0393 NC_008599.1 364956 365516 D hypothetical protein 364956..365516 Campylobacter fetus subsp. fetus 82-40 4537863 YP_891596.1 CDS CFF8240_0394 NC_008599.1 365543 366154 D hypothetical protein 365543..366154 Campylobacter fetus subsp. fetus 82-40 4539013 YP_891597.1 CDS CFF8240_0395 NC_008599.1 366141 366569 D hypothetical protein 366141..366569 Campylobacter fetus subsp. fetus 82-40 4538533 YP_891598.1 CDS CFF8240_0396 NC_008599.1 366787 368007 D identified by match to protein family HMM PF05538; major outer membrane protein 366787..368007 Campylobacter fetus subsp. fetus 82-40 4538064 YP_891599.1 CDS CFF8240_0397 NC_008599.1 368284 369504 D identified by match to protein family HMM PF05538; major outer membrane protein 368284..369504 Campylobacter fetus subsp. fetus 82-40 4537792 YP_891600.1 CDS CFF8240_0398 NC_008599.1 369628 370197 D identified by match to protein family HMM PF00034; cytochrome c family protein 369628..370197 Campylobacter fetus subsp. fetus 82-40 4537774 YP_891601.1 CDS CFF8240_0399 NC_008599.1 370342 371460 D identified by match to protein family HMM PF01094; branched-chain amino-acid ABC transport system periplasmic binding protein 370342..371460 Campylobacter fetus subsp. fetus 82-40 4538329 YP_891602.1 CDS CFF8240_0400 NC_008599.1 371735 372631 D identified by match to protein family HMM PF02653; hydrophobic amino acid ABC transporter permease/ATP-binding protein 371735..372631 Campylobacter fetus subsp. fetus 82-40 4538648 YP_891603.1 CDS CFF8240_0401 NC_008599.1 372634 373689 D identified by match to protein family HMM PF02653; ABC transport system permease 372634..373689 Campylobacter fetus subsp. fetus 82-40 4539256 YP_891604.1 CDS CFF8240_0402 NC_008599.1 373686 374450 D identified by match to protein family HMM PF00005; high affinity branched-chain amino acid ABC transporter ATP-binding protein 373686..374450 Campylobacter fetus subsp. fetus 82-40 4538599 YP_891605.1 CDS CFF8240_0403 NC_008599.1 374447 375142 D identified by match to protein family HMM PF00005; high affinity branched-chain amino acid ABC transporter ATP-binding protein 374447..375142 Campylobacter fetus subsp. fetus 82-40 4538455 YP_891606.1 CDS CFF8240_0404 NC_008599.1 375213 378287 D identified by match to protein family HMM PF01578; CcmF/CcyK/CcsA family cytochrome c biogenesis protein 375213..378287 Campylobacter fetus subsp. fetus 82-40 4538874 YP_891607.1 CDS CFF8240_0406 NC_008599.1 378354 378794 D hypothetical protein 378354..378794 Campylobacter fetus subsp. fetus 82-40 4538680 YP_891608.1 CDS CFF8240_0405 NC_008599.1 378784 379236 R identified by match to protein family HMM PF04608; phosphatidylglycerophosphatase A complement(378784..379236) Campylobacter fetus subsp. fetus 82-40 4537896 YP_891609.1 CDS CFF8240_0407 NC_008599.1 379257 380333 R ATP-sulfurylase family protein complement(379257..380333) Campylobacter fetus subsp. fetus 82-40 4538321 YP_891610.1 CDS CFF8240_0408 NC_008599.1 380413 381303 R identified by match to protein family HMM PF00072; response regulator receiver domain-containing protein complement(380413..381303) Campylobacter fetus subsp. fetus 82-40 4538166 YP_891611.1 CDS ispDF NC_008599.1 381300 382418 R bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein complement(381300..382418) Campylobacter fetus subsp. fetus 82-40 4537765 YP_891612.1 CDS thiC NC_008599.1 382570 383922 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 382570..383922 Campylobacter fetus subsp. fetus 82-40 4539139 YP_891613.1 CDS mrp NC_008599.1 383919 384995 D Mrp protein 383919..384995 Campylobacter fetus subsp. fetus 82-40 4538441 YP_891614.1 CDS CFF8240_0412 NC_008599.1 385216 386406 D 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 385216..386406 Campylobacter fetus subsp. fetus 82-40 4537762 YP_891615.1 CDS CFF8240_0413 NC_008599.1 386419 388002 D identified by match to protein family HMM PF00005; match to protein family HMM PF02463; ABC transporter ATP-binding protein 386419..388002 Campylobacter fetus subsp. fetus 82-40 4538216 YP_891616.1 CDS frdB NC_008599.1 388097 388837 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(388097..388837) Campylobacter fetus subsp. fetus 82-40 4537915 YP_891617.1 CDS CFF8240_0415 NC_008599.1 388809 390797 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(388809..390797) Campylobacter fetus subsp. fetus 82-40 4539497 YP_891618.1 CDS CFF8240_0416 NC_008599.1 390794 391570 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit complement(390794..391570) Campylobacter fetus subsp. fetus 82-40 4538824 YP_891619.1 CDS lgt NC_008599.1 391831 392661 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(391831..392661) Campylobacter fetus subsp. fetus 82-40 4538611 YP_891620.1 CDS CFF8240_0418 NC_008599.1 392654 393205 R hypothetical protein complement(392654..393205) Campylobacter fetus subsp. fetus 82-40 4538079 YP_891621.1 CDS CFF8240_0419 NC_008599.1 393263 394405 R identified by match to protein family HMM PF00817; DNA polymerase IV 1 complement(393263..394405) Campylobacter fetus subsp. fetus 82-40 4539454 YP_891622.1 CDS CFF8240_0421 NC_008599.1 396576 396779 R heavy metal transport/detoxification protein complement(396576..396779) Campylobacter fetus subsp. fetus 82-40 4538190 YP_891623.1 CDS CFF8240_0422 NC_008599.1 396776 397333 R identified by match to protein family HMM PF00583; acetyltransferase complement(396776..397333) Campylobacter fetus subsp. fetus 82-40 4539515 YP_891624.1 CDS CFF8240_0423 NC_008599.1 397626 398867 D identified by match to protein family HMM PF03222; serine transporter 397626..398867 Campylobacter fetus subsp. fetus 82-40 4538100 YP_891625.1 CDS CFF8240_0424 NC_008599.1 398919 399626 D identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 398919..399626 Campylobacter fetus subsp. fetus 82-40 4538854 YP_891626.1 CDS CFF8240_0425 NC_008599.1 399652 400143 D identified by match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase 399652..400143 Campylobacter fetus subsp. fetus 82-40 4539355 YP_891627.1 CDS CFF8240_0426 NC_008599.1 400347 401660 D identified by match to protein family HMM PF00375; aerobic C4-dicarboxylate transport protein 400347..401660 Campylobacter fetus subsp. fetus 82-40 4539568 YP_891628.1 CDS CFF8240_0427 NC_008599.1 401804 403117 D identified by match to protein family HMM PF00375; aerobic C4-dicarboxylate transport protein 401804..403117 Campylobacter fetus subsp. fetus 82-40 4538705 YP_891629.1 CDS CFF8240_0428 NC_008599.1 403179 403784 R identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp family transcriptional regulator complement(403179..403784) Campylobacter fetus subsp. fetus 82-40 4538443 YP_891630.1 CDS CFF8240_0429 NC_008599.1 403986 406367 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01409; trimethylamine-N-oxide reductase 2 403986..406367 Campylobacter fetus subsp. fetus 82-40 4539520 YP_891631.1 CDS CFF8240_0431 NC_008599.1 407016 408665 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; histidine kinase A domain-containing protein 407016..408665 Campylobacter fetus subsp. fetus 82-40 4539155 YP_891632.1 CDS CFF8240_0432 NC_008599.1 408662 409345 D identified by match to protein family HMM PF00072; putative two-component regulator 408662..409345 Campylobacter fetus subsp. fetus 82-40 4539345 YP_891633.1 CDS CFF8240_0433 NC_008599.1 409414 410100 D disulfide isomerase 409414..410100 Campylobacter fetus subsp. fetus 82-40 4539550 YP_891634.1 CDS CFF8240_0434 NC_008599.1 410111 410758 D putative disulfide oxidoreductase 410111..410758 Campylobacter fetus subsp. fetus 82-40 4539384 YP_891635.1 CDS CFF8240_0435 NC_008599.1 410926 412716 D identified by match to protein family HMM PF00593; TonB-dependent receptor domain-containing protein 410926..412716 Campylobacter fetus subsp. fetus 82-40 4539386 YP_891636.1 CDS CFF8240_0436 NC_008599.1 412798 414606 D identified by match to protein family HMM PF05935; arylsulfotransferase 412798..414606 Campylobacter fetus subsp. fetus 82-40 4538568 YP_891637.1 CDS CFF8240_0437 NC_008599.1 414756 416834 D identified by match to protein family HMM PF00350; GTP-binding protein 414756..416834 Campylobacter fetus subsp. fetus 82-40 4538821 YP_891638.1 CDS CFF8240_0438 NC_008599.1 416828 418627 D identified by match to protein family HMM PF00350; GTP-binding protein 416828..418627 Campylobacter fetus subsp. fetus 82-40 4538665 YP_891639.1 CDS CFF8240_0439 NC_008599.1 418802 419668 D hypothetical protein 418802..419668 Campylobacter fetus subsp. fetus 82-40 4539150 YP_891640.1 CDS CFF8240_0440 NC_008599.1 419710 422304 D identified by match to protein family HMM PF00116; nitrous-oxide reductase 419710..422304 Campylobacter fetus subsp. fetus 82-40 4538477 YP_891641.1 CDS CFF8240_0441 NC_008599.1 422431 423198 D hypothetical protein 422431..423198 Campylobacter fetus subsp. fetus 82-40 4538107 YP_891642.1 CDS CFF8240_0442 NC_008599.1 423195 424409 D nitrous oxidase accessory protein 423195..424409 Campylobacter fetus subsp. fetus 82-40 4538446 YP_891643.1 CDS CFF8240_0443 NC_008599.1 424402 425076 D identified by match to protein family HMM PF00037; iron-sulfur protein 424402..425076 Campylobacter fetus subsp. fetus 82-40 4538442 YP_891644.1 CDS CFF8240_0444 NC_008599.1 425079 425627 D hypothetical protein 425079..425627 Campylobacter fetus subsp. fetus 82-40 4539079 YP_891645.1 CDS CFF8240_0445 NC_008599.1 425624 426073 D hypothetical protein 425624..426073 Campylobacter fetus subsp. fetus 82-40 4538016 YP_891646.1 CDS CFF8240_0446 NC_008599.1 426078 426974 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR02163; NapH/MauN family ferredoxin-type protein 426078..426974 Campylobacter fetus subsp. fetus 82-40 4538152 YP_891647.1 CDS CFF8240_0447 NC_008599.1 426987 427640 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 426987..427640 Campylobacter fetus subsp. fetus 82-40 4538495 YP_891648.1 CDS CFF8240_0448 NC_008599.1 427700 428464 D multi-copper enzyme maturation ABC transporter permease 427700..428464 Campylobacter fetus subsp. fetus 82-40 4538316 YP_891649.1 CDS CFF8240_0449 NC_008599.1 428461 428916 D hypothetical protein 428461..428916 Campylobacter fetus subsp. fetus 82-40 4539171 YP_891650.1 CDS CFF8240_0451 NC_008599.1 429465 430682 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; putative putative two-component sensor complement(429465..430682) Campylobacter fetus subsp. fetus 82-40 4538731 YP_891651.1 CDS CFF8240_0452 NC_008599.1 430687 431355 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; response regulator ompr complement(430687..431355) Campylobacter fetus subsp. fetus 82-40 4538406 YP_891652.1 CDS CFF8240_0453 NC_008599.1 431369 432466 R identified by match to protein family HMM PF01292; nickel-dependent hydrogenases B-type cytochrome subunit family protein complement(431369..432466) Campylobacter fetus subsp. fetus 82-40 4537898 YP_891653.1 CDS CFF8240_0454 NC_008599.1 432459 432965 R putative diheme cytochrome c complement(432459..432965) Campylobacter fetus subsp. fetus 82-40 4538291 YP_891654.1 CDS CFF8240_0455 NC_008599.1 432975 433400 R hypothetical protein complement(432975..433400) Campylobacter fetus subsp. fetus 82-40 4538565 YP_891655.1 CDS CFF8240_0456 NC_008599.1 433700 437194 R surface array protein complement(433700..437194) Campylobacter fetus subsp. fetus 82-40 4538157 YP_891656.1 CDS CFF8240_0457 NC_008599.1 437482 438783 R identified by match to protein family HMM PF02321; protein SapF complement(437482..438783) Campylobacter fetus subsp. fetus 82-40 4538650 YP_891657.1 CDS CFF8240_0458 NC_008599.1 438773 440056 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; protein Sape complement(438773..440056) Campylobacter fetus subsp. fetus 82-40 4538403 YP_891658.1 CDS CFF8240_0459 NC_008599.1 440056 441807 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR01842; hypothetical protein complement(440056..441807) Campylobacter fetus subsp. fetus 82-40 4538188 YP_891659.1 CDS CFF8240_0460 NC_008599.1 441794 442936 R identified by match to protein family HMM PF07277; SapC protein complement(441794..442936) Campylobacter fetus subsp. fetus 82-40 4538785 YP_891660.1 CDS CFF8240_0461 NC_008599.1 443425 446250 D surface layer protein SapB9 443425..446250 Campylobacter fetus subsp. fetus 82-40 4538151 YP_891661.1 CDS CFF8240_0462 NC_008599.1 446985 450305 R surface array protein complement(446985..450305) Campylobacter fetus subsp. fetus 82-40 4538695 YP_891662.1 CDS CFF8240_0463 NC_008599.1 450610 451998 R hypothetical protein complement(450610..451998) Campylobacter fetus subsp. fetus 82-40 4538258 YP_891663.1 CDS CFF8240_0464 NC_008599.1 452228 456001 R surface array protein complement(452228..456001) Campylobacter fetus subsp. fetus 82-40 4539489 YP_891664.1 CDS CFF8240_0468 NC_008599.1 460611 461027 R hypothetical protein complement(460611..461027) Campylobacter fetus subsp. fetus 82-40 4538897 YP_891665.1 CDS panB NC_008599.1 461114 461908 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 461114..461908 Campylobacter fetus subsp. fetus 82-40 4538570 YP_891666.1 CDS CFF8240_0470 NC_008599.1 461892 462203 D hypothetical protein 461892..462203 Campylobacter fetus subsp. fetus 82-40 4539536 YP_891667.1 CDS ruvB NC_008599.1 462213 463244 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 462213..463244 Campylobacter fetus subsp. fetus 82-40 4538693 YP_891668.1 CDS CFF8240_0472 NC_008599.1 463237 464340 D identified by match to protein family HMM PF01594; acid membrane antigen A 463237..464340 Campylobacter fetus subsp. fetus 82-40 4538220 YP_891669.1 CDS CFF8240_0474 NC_008599.1 465407 466147 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 465407..466147 Campylobacter fetus subsp. fetus 82-40 4539091 YP_891670.1 CDS CFF8240_0475 NC_008599.1 466137 467051 D identified by match to protein family HMM PF02470; putative ABC transport system periplasmic substrate-binding protein 466137..467051 Campylobacter fetus subsp. fetus 82-40 4539318 YP_891671.1 CDS CFF8240_0476 NC_008599.1 467048 467584 D hypothetical protein 467048..467584 Campylobacter fetus subsp. fetus 82-40 4538662 YP_891672.1 CDS CFF8240_0477 NC_008599.1 467586 467990 R identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; putative metalloprotease complement(467586..467990) Campylobacter fetus subsp. fetus 82-40 4538284 YP_891673.1 CDS CFF8240_0478 NC_008599.1 468408 471737 R surface layer protein SapA12 complement(468408..471737) Campylobacter fetus subsp. fetus 82-40 4538602 YP_891674.1 CDS CFF8240_0479 NC_008599.1 471970 472242 R identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385; addiction module antitoxin complement(471970..472242) Campylobacter fetus subsp. fetus 82-40 4539490 YP_891675.1 CDS CFF8240_0480 NC_008599.1 472235 472483 R hypothetical protein complement(472235..472483) Campylobacter fetus subsp. fetus 82-40 4537784 YP_891676.1 CDS CFF8240_0481 NC_008599.1 472729 475494 R surface array protein complement(472729..475494) Campylobacter fetus subsp. fetus 82-40 4539152 YP_891677.1 CDS CFF8240_0482 NC_008599.1 475711 477285 D identified by match to protein family HMM PF07804; match to protein family HMM PF07805; match to protein family HMM TIGR03071; hypothetical protein 475711..477285 Campylobacter fetus subsp. fetus 82-40 4539052 YP_891678.1 CDS CFF8240_0483 NC_008599.1 477273 477389 D hypothetical protein 477273..477389 Campylobacter fetus subsp. fetus 82-40 4539193 YP_891679.1 CDS CFF8240_0484 NC_008599.1 477568 480387 R hypothetical protein complement(477568..480387) Campylobacter fetus subsp. fetus 82-40 4538288 YP_891680.1 CDS CFF8240_0485 NC_008599.1 480544 481908 D identified by match to protein family HMM PF01637; match to protein family HMM PF03008; ATPase 480544..481908 Campylobacter fetus subsp. fetus 82-40 4538360 YP_891681.1 CDS CFF8240_0486 NC_008599.1 482127 485447 R surface array protein complement(482127..485447) Campylobacter fetus subsp. fetus 82-40 4539335 YP_891682.1 CDS CFF8240_0487 NC_008599.1 485947 486723 D surface array protein 485947..486723 Campylobacter fetus subsp. fetus 82-40 4538953 YP_891683.1 CDS CFF8240_0489 NC_008599.1 488225 488350 D hypothetical protein 488225..488350 Campylobacter fetus subsp. fetus 82-40 4538896 YP_891684.1 CDS CFF8240_0490 NC_008599.1 488696 492574 R surface array protein complement(488696..492574) Campylobacter fetus subsp. fetus 82-40 4538133 YP_891685.1 CDS CFF8240_0491 NC_008599.1 492900 494045 R identified by match to protein family HMM PF00534; group 1 glycosyl transferase complement(492900..494045) Campylobacter fetus subsp. fetus 82-40 4539137 YP_891686.1 CDS CFF8240_0492 NC_008599.1 494042 496273 R identified by match to protein family HMM PF00534; mannosyltransferase A complement(494042..496273) Campylobacter fetus subsp. fetus 82-40 4538918 YP_891687.1 CDS CFF8240_0493 NC_008599.1 496276 496461 R hypothetical protein complement(496276..496461) Campylobacter fetus subsp. fetus 82-40 4538598 YP_891688.1 CDS CFF8240_0494 NC_008599.1 496461 497645 R identified by match to protein family HMM PF00005; ABC transporter complement(496461..497645) Campylobacter fetus subsp. fetus 82-40 4538478 YP_891689.1 CDS CFF8240_0495 NC_008599.1 497642 498406 R identified by match to protein family HMM PF01061; putative ABC-2 type transport system permease protein complement(497642..498406) Campylobacter fetus subsp. fetus 82-40 4538928 YP_891690.1 CDS CFF8240_0496 NC_008599.1 498593 499708 D identified by match to protein family HMM PF00534; group 1 glycosyl transferase 498593..499708 Campylobacter fetus subsp. fetus 82-40 4539325 YP_891691.1 CDS CFF8240_0497 NC_008599.1 499680 500993 D identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025; undecaprenyl-phosphate galactosephosphotransferase 499680..500993 Campylobacter fetus subsp. fetus 82-40 4538131 YP_891692.1 CDS radA NC_008599.1 500997 502337 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(500997..502337) Campylobacter fetus subsp. fetus 82-40 4538144 YP_891693.1 CDS ftsY NC_008599.1 502337 503206 R identified by match to protein family HMM PF00448; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY complement(502337..503206) Campylobacter fetus subsp. fetus 82-40 4539441 YP_891694.1 CDS CFF8240_0500 NC_008599.1 503206 503760 R thiredoxin complement(503206..503760) Campylobacter fetus subsp. fetus 82-40 4539089 YP_891695.1 CDS CFF8240_0501 NC_008599.1 503813 504442 D identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5,10-methenyltetrahydrofolate synthetase 503813..504442 Campylobacter fetus subsp. fetus 82-40 4538713 YP_891696.1 CDS CFF8240_0502 NC_008599.1 504375 505928 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 504375..505928 Campylobacter fetus subsp. fetus 82-40 4538966 YP_891697.1 CDS CFF8240_0503 NC_008599.1 505941 506525 D hypothetical protein 505941..506525 Campylobacter fetus subsp. fetus 82-40 4538580 YP_891698.1 CDS CFF8240_0504 NC_008599.1 506534 507103 D integral membrane protein 506534..507103 Campylobacter fetus subsp. fetus 82-40 4538396 YP_891699.1 CDS CFF8240_0505 NC_008599.1 507100 508389 D hypothetical protein 507100..508389 Campylobacter fetus subsp. fetus 82-40 4538935 YP_891700.1 CDS CFF8240_0510 NC_008599.1 514941 515345 D identified by match to protein family HMM PF00633; hypothetical protein 514941..515345 Campylobacter fetus subsp. fetus 82-40 4537917 YP_891701.1 CDS CFF8240_0511 NC_008599.1 515549 516634 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 515549..516634 Campylobacter fetus subsp. fetus 82-40 4539241 YP_891702.1 CDS bioA NC_008599.1 516735 518036 D identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate transaminase 516735..518036 Campylobacter fetus subsp. fetus 82-40 4538866 YP_891703.1 CDS nth NC_008599.1 518029 518661 R identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(518029..518661) Campylobacter fetus subsp. fetus 82-40 4538840 YP_891704.1 CDS CFF8240_0514 NC_008599.1 518760 519569 D identified by match to protein family HMM PF00639; foldase protein PrsA 518760..519569 Campylobacter fetus subsp. fetus 82-40 4538121 YP_891705.1 CDS fbaA NC_008599.1 519579 520643 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 519579..520643 Campylobacter fetus subsp. fetus 82-40 4537954 YP_891706.1 CDS CFF8240_0516 NC_008599.1 520732 522057 D hypothetical protein 520732..522057 Campylobacter fetus subsp. fetus 82-40 4538003 YP_891707.1 CDS CFF8240_0517 NC_008599.1 522044 523048 D chemotaxis protein MotB 522044..523048 Campylobacter fetus subsp. fetus 82-40 4538267 YP_891708.1 CDS CFF8240_0518 NC_008599.1 523038 523910 D hypothetical protein 523038..523910 Campylobacter fetus subsp. fetus 82-40 4539496 YP_891709.1 CDS hisD NC_008599.1 523934 525220 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 523934..525220 Campylobacter fetus subsp. fetus 82-40 4538993 YP_891710.1 CDS CFF8240_0520 NC_008599.1 525277 526029 D identified by match to protein family HMM PF00669; flagellin 525277..526029 Campylobacter fetus subsp. fetus 82-40 4538161 YP_891711.1 CDS CFF8240_0521 NC_008599.1 526080 527951 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(526080..527951) Campylobacter fetus subsp. fetus 82-40 4539548 YP_891712.1 CDS CFF8240_0522 NC_008599.1 528108 528920 D identified by match to protein family HMM PF00460; flagellar basal-body rod protein 528108..528920 Campylobacter fetus subsp. fetus 82-40 4539457 YP_891713.1 CDS flgG NC_008599.1 528939 529727 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 528939..529727 Campylobacter fetus subsp. fetus 82-40 4539331 YP_891714.1 CDS CFF8240_0524 NC_008599.1 530025 531938 D identified by match to protein family HMM PF03239; FTR1 family iron permease 530025..531938 Campylobacter fetus subsp. fetus 82-40 4537958 YP_891715.1 CDS CFF8240_0525 NC_008599.1 531935 532456 D hypothetical protein 531935..532456 Campylobacter fetus subsp. fetus 82-40 4539328 YP_891716.1 CDS CFF8240_0526 NC_008599.1 532629 533993 D identified by match to protein family HMM PF04945; integral membrane protein 532629..533993 Campylobacter fetus subsp. fetus 82-40 4539146 YP_891717.1 CDS CFF8240_0527 NC_008599.1 533998 535242 D identified by match to protein family HMM PF02687; ABC transport permease 533998..535242 Campylobacter fetus subsp. fetus 82-40 4538305 YP_891718.1 CDS CFF8240_0528 NC_008599.1 535229 536359 D identified by match to protein family HMM PF02687; integral membrane protein-permease component, involved in lipoprotein release 535229..536359 Campylobacter fetus subsp. fetus 82-40 4539017 YP_891719.1 CDS CFF8240_0529 NC_008599.1 536362 537024 D identified by match to protein family HMM PF00005; ABC transport protein 536362..537024 Campylobacter fetus subsp. fetus 82-40 4538818 YP_891720.1 CDS CFF8240_0530 NC_008599.1 537021 537518 D hypothetical protein 537021..537518 Campylobacter fetus subsp. fetus 82-40 4538780 YP_891721.1 CDS CFF8240_0531 NC_008599.1 537590 538561 D identified by match to protein family HMM PF04371; peptidyl-arginine deiminase 537590..538561 Campylobacter fetus subsp. fetus 82-40 4538355 YP_891722.1 CDS CFF8240_0532 NC_008599.1 538558 539433 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; ferrous-iron efflux pump FieF 538558..539433 Campylobacter fetus subsp. fetus 82-40 4538071 YP_891723.1 CDS CFF8240_0533 NC_008599.1 539430 540299 D identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 539430..540299 Campylobacter fetus subsp. fetus 82-40 4538592 YP_891724.1 CDS gltS NC_008599.1 540338 541552 R identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter complement(540338..541552) Campylobacter fetus subsp. fetus 82-40 4538970 YP_891725.1 CDS CFF8240_0535 NC_008599.1 541644 542264 R identified by match to protein family HMM PF01863; hypothetical protein complement(541644..542264) Campylobacter fetus subsp. fetus 82-40 4539060 YP_891726.1 CDS CFF8240_0536 NC_008599.1 542240 543562 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; mate efflux family protein complement(542240..543562) Campylobacter fetus subsp. fetus 82-40 4538529 YP_891727.1 CDS CFF8240_0537 NC_008599.1 543559 544431 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensory trasnduction histidine kinase complement(543559..544431) Campylobacter fetus subsp. fetus 82-40 4537977 YP_891728.1 CDS CFF8240_0538 NC_008599.1 544425 545093 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; sensory transduction regulator complement(544425..545093) Campylobacter fetus subsp. fetus 82-40 4538950 YP_891729.1 CDS CFF8240_0539 NC_008599.1 545297 546595 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator superfamily protein 545297..546595 Campylobacter fetus subsp. fetus 82-40 4537772 YP_891730.1 CDS CFF8240_0540 NC_008599.1 546599 548533 D identified by match to protein family HMM PF00005; match to protein family HMM PF02463; ABC transporter ATP-binding protein uup 546599..548533 Campylobacter fetus subsp. fetus 82-40 4539143 YP_891731.1 CDS CFF8240_0541 NC_008599.1 548543 549919 D identified by match to protein family HMM PF00209; sodium-dependent transporter 548543..549919 Campylobacter fetus subsp. fetus 82-40 4538269 YP_891732.1 CDS CFF8240_0542 NC_008599.1 549968 551167 D identified by match to protein family HMM PF01435; M48 family peptidase 549968..551167 Campylobacter fetus subsp. fetus 82-40 4539498 YP_891733.1 CDS CFF8240_0543 NC_008599.1 551154 551939 D identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; bifunctional methyltransferase 551154..551939 Campylobacter fetus subsp. fetus 82-40 4539187 YP_891734.1 CDS CFF8240_0545 NC_008599.1 551950 552429 D putative integral membrane protein 551950..552429 Campylobacter fetus subsp. fetus 82-40 4538583 YP_891735.1 CDS CFF8240_0544 NC_008599.1 552426 552776 R hypothetical protein complement(552426..552776) Campylobacter fetus subsp. fetus 82-40 4538464 YP_891736.1 CDS CFF8240_0546 NC_008599.1 553217 554464 R hypothetical protein complement(553217..554464) Campylobacter fetus subsp. fetus 82-40 4539278 YP_891737.1 CDS CFF8240_0547 NC_008599.1 554461 555102 R uracil-DNA glycosylase superfamily protein complement(554461..555102) Campylobacter fetus subsp. fetus 82-40 4538986 YP_891738.1 CDS CFF8240_0548 NC_008599.1 555142 555615 R identified by match to protein family HMM PF00583; acetyltransferase complement(555142..555615) Campylobacter fetus subsp. fetus 82-40 4539357 YP_891739.1 CDS amt NC_008599.1 555682 556965 R identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter complement(555682..556965) Campylobacter fetus subsp. fetus 82-40 4539183 YP_891740.1 CDS CFF8240_0550 NC_008599.1 556975 557313 R identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II complement(556975..557313) Campylobacter fetus subsp. fetus 82-40 4539253 YP_891741.1 CDS rpmH NC_008599.1 557520 557654 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 557520..557654 Campylobacter fetus subsp. fetus 82-40 4538915 YP_891742.1 CDS rnpA NC_008599.1 557675 558007 D identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component 557675..558007 Campylobacter fetus subsp. fetus 82-40 4539452 YP_891743.1 CDS CFF8240_0553 NC_008599.1 558342 559937 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 558342..559937 Campylobacter fetus subsp. fetus 82-40 4538385 YP_891744.1 CDS CFF8240_0554 NC_008599.1 559927 560880 D hypothetical protein 559927..560880 Campylobacter fetus subsp. fetus 82-40 4539353 YP_891745.1 CDS trmE NC_008599.1 560877 562193 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 560877..562193 Campylobacter fetus subsp. fetus 82-40 4538711 YP_891746.1 CDS purL NC_008599.1 562212 564407 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 562212..564407 Campylobacter fetus subsp. fetus 82-40 4538221 YP_891747.1 CDS CFF8240_0557 NC_008599.1 564407 565147 D identified by match to protein family HMM PF00226; DnaJ domain-containing protein 564407..565147 Campylobacter fetus subsp. fetus 82-40 4537852 YP_891748.1 CDS purH NC_008599.1 565175 566707 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 565175..566707 Campylobacter fetus subsp. fetus 82-40 4538643 YP_891749.1 CDS CFF8240_0559 NC_008599.1 566853 567251 D hypothetical protein 566853..567251 Campylobacter fetus subsp. fetus 82-40 4538243 YP_891750.1 CDS CFF8240_0560 NC_008599.1 567244 568425 D hypothetical protein 567244..568425 Campylobacter fetus subsp. fetus 82-40 4537883 YP_891751.1 CDS CFF8240_0561 NC_008599.1 568422 568703 D identified by match to protein family HMM PF01883; hypothetical protein 568422..568703 Campylobacter fetus subsp. fetus 82-40 4538208 YP_891752.1 CDS CFF8240_0562 NC_008599.1 568793 570385 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; putative methyl-accepting chemotaxis protein 568793..570385 Campylobacter fetus subsp. fetus 82-40 4537947 YP_891753.1 CDS CFF8240_0563 NC_008599.1 570443 571354 R identified by match to protein family HMM PF01063; D-alanine aminotransferase complement(570443..571354) Campylobacter fetus subsp. fetus 82-40 4538745 YP_891754.1 CDS CFF8240_0565 NC_008599.1 571411 571917 D hypothetical protein 571411..571917 Campylobacter fetus subsp. fetus 82-40 4538342 YP_891755.1 CDS CFF8240_0564 NC_008599.1 571903 573864 R hypothetical protein complement(571903..573864) Campylobacter fetus subsp. fetus 82-40 4539413 YP_891756.1 CDS CFF8240_0566 NC_008599.1 573864 574145 R hypothetical protein complement(573864..574145) Campylobacter fetus subsp. fetus 82-40 4538779 YP_891757.1 CDS mraW NC_008599.1 574142 575065 R identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW complement(574142..575065) Campylobacter fetus subsp. fetus 82-40 4538911 YP_891758.1 CDS CFF8240_0568 NC_008599.1 575174 575767 D identified by match to protein family HMM PF00596; hypothetical protein 575174..575767 Campylobacter fetus subsp. fetus 82-40 4539323 YP_891759.1 CDS CFF8240_0569 NC_008599.1 575888 577345 D putative peptidyl-prolyl cis-trans isomerase D-like protein 575888..577345 Campylobacter fetus subsp. fetus 82-40 4539530 YP_891760.1 CDS ftsA NC_008599.1 577351 578835 D identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 577351..578835 Campylobacter fetus subsp. fetus 82-40 4538513 YP_891761.1 CDS ftsZ NC_008599.1 578849 580003 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 578849..580003 Campylobacter fetus subsp. fetus 82-40 4539519 YP_891762.1 CDS CFF8240_0572 NC_008599.1 580021 581961 R identified by match to protein family HMM PF00877; NLP/P60 complement(580021..581961) Campylobacter fetus subsp. fetus 82-40 4538304 YP_891763.1 CDS CFF8240_0573 NC_008599.1 582019 583326 D hypothetical protein 582019..583326 Campylobacter fetus subsp. fetus 82-40 4538448 YP_891764.1 CDS CFF8240_0574 NC_008599.1 583323 583793 D hypothetical protein 583323..583793 Campylobacter fetus subsp. fetus 82-40 4538103 YP_891765.1 CDS lolA NC_008599.1 583839 584354 R participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein complement(583839..584354) Campylobacter fetus subsp. fetus 82-40 4539221 YP_891766.1 CDS secA NC_008599.1 584488 587055 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 584488..587055 Campylobacter fetus subsp. fetus 82-40 4538397 YP_891767.1 CDS CFF8240_0577 NC_008599.1 587048 588247 D identified by match to protein family HMM PF02687; permease 587048..588247 Campylobacter fetus subsp. fetus 82-40 4538011 YP_891768.1 CDS CFF8240_0578 NC_008599.1 588250 588543 R N-terminal methylation complement(588250..588543) Campylobacter fetus subsp. fetus 82-40 4538205 YP_891769.1 CDS CFF8240_0580 NC_008599.1 588992 590164 R putative integral membrane protein complement(588992..590164) Campylobacter fetus subsp. fetus 82-40 4538002 YP_891770.1 CDS CFF8240_0581 NC_008599.1 590187 591329 R identified by match to protein family HMM PF07690; putative transport protein complement(590187..591329) Campylobacter fetus subsp. fetus 82-40 4539100 YP_891771.1 CDS CFF8240_0582 NC_008599.1 591333 591776 R identified by match to protein family HMM PF00156; phosphoribosyltransferase complement(591333..591776) Campylobacter fetus subsp. fetus 82-40 4538904 YP_891772.1 CDS CFF8240_0583 NC_008599.1 591786 593117 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease family protein complement(591786..593117) Campylobacter fetus subsp. fetus 82-40 4537801 YP_891773.1 CDS CFF8240_0584 NC_008599.1 593127 594209 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; hypothetical protein complement(593127..594209) Campylobacter fetus subsp. fetus 82-40 4539361 YP_891774.1 CDS CFF8240_0585 NC_008599.1 594319 596838 D identified by match to protein family HMM PF01966; GlnD family protein 594319..596838 Campylobacter fetus subsp. fetus 82-40 4538149 YP_891775.1 CDS glmS NC_008599.1 596849 598666 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 596849..598666 Campylobacter fetus subsp. fetus 82-40 4538135 YP_891776.1 CDS CFF8240_0587 NC_008599.1 598804 600021 D identified by match to protein family HMM PF04143; putative inner membrane protein 598804..600021 Campylobacter fetus subsp. fetus 82-40 4539251 YP_891777.1 CDS CFF8240_0588 NC_008599.1 600021 600257 D identified by match to protein family HMM PF01206; hypothetical protein 600021..600257 Campylobacter fetus subsp. fetus 82-40 4538527 YP_891778.1 CDS CFF8240_0589 NC_008599.1 600264 600431 D hypothetical protein 600264..600431 Campylobacter fetus subsp. fetus 82-40 4538298 YP_891779.1 CDS murI NC_008599.1 600434 601195 R identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067; glutamate racemase complement(600434..601195) Campylobacter fetus subsp. fetus 82-40 4538802 YP_891780.1 CDS CFF8240_0591 NC_008599.1 601199 603001 R identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148; 3-polyprenyl-4hydroxybenzoate decarboxylase complement(601199..603001) Campylobacter fetus subsp. fetus 82-40 4539341 YP_891781.1 CDS CFF8240_0596 NC_008599.1 609772 610176 D identified by match to protein family HMM PF00633; hypothetical protein 609772..610176 Campylobacter fetus subsp. fetus 82-40 4539424 YP_891782.1 CDS CFF8240_0606 NC_008599.1 611374 612531 D identified by match to protein family HMM PF00990; match to protein family HMM PF01814; match to protein family HMM TIGR00254; match to protein family HMM TIGR02481; diguanylate cyclase 611374..612531 Campylobacter fetus subsp. fetus 82-40 4538703 YP_891783.1 CDS CFF8240_0607 NC_008599.1 612568 615453 D hypothetical protein 612568..615453 Campylobacter fetus subsp. fetus 82-40 4539508 YP_891784.1 CDS CFF8240_0608 NC_008599.1 615482 616573 R identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage-inducible domain-containing protein complement(615482..616573) Campylobacter fetus subsp. fetus 82-40 4539391 YP_891785.1 CDS CFF8240_0609 NC_008599.1 616590 617297 R hypothetical protein complement(616590..617297) Campylobacter fetus subsp. fetus 82-40 4539348 YP_891786.1 CDS ileS NC_008599.1 617323 620073 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 617323..620073 Campylobacter fetus subsp. fetus 82-40 4537860 YP_891787.1 CDS gatA NC_008599.1 620173 621534 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 620173..621534 Campylobacter fetus subsp. fetus 82-40 4539005 YP_891788.1 CDS guaB NC_008599.1 621539 622990 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 621539..622990 Campylobacter fetus subsp. fetus 82-40 4538178 YP_891789.1 CDS metX NC_008599.1 622990 624096 D identified by match to protein family HMM PF00561; match to protein family HMM TIGR01392; homoserine O-acetyltransferase 622990..624096 Campylobacter fetus subsp. fetus 82-40 4538925 YP_891790.1 CDS CFF8240_0614 NC_008599.1 624087 624284 D hypothetical protein 624087..624284 Campylobacter fetus subsp. fetus 82-40 4538746 YP_891791.1 CDS CFF8240_0615 NC_008599.1 624277 625083 D carbon-nitrogen family hydrolase 624277..625083 Campylobacter fetus subsp. fetus 82-40 4538931 YP_891792.1 CDS murC NC_008599.1 625085 626383 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 625085..626383 Campylobacter fetus subsp. fetus 82-40 4538488 YP_891793.1 CDS CFF8240_0617 NC_008599.1 626380 626721 D hypothetical protein 626380..626721 Campylobacter fetus subsp. fetus 82-40 4538698 YP_891794.1 CDS CFF8240_0619 NC_008599.1 626725 627741 D identified by match to protein family HMM PF00724; NADPH dehydrogenase 626725..627741 Campylobacter fetus subsp. fetus 82-40 4539011 YP_891795.1 CDS CFF8240_0618 NC_008599.1 627738 628433 R identified by match to protein family HMM PF00005; nitrate transport ATP-binding protein NrtD complement(627738..628433) Campylobacter fetus subsp. fetus 82-40 4538096 YP_891796.1 CDS CFF8240_0620 NC_008599.1 628465 629202 R identified by match to protein family HMM PF00528; taurine transport system permease TauC complement(628465..629202) Campylobacter fetus subsp. fetus 82-40 4537929 YP_891797.1 CDS CFF8240_0621 NC_008599.1 629204 630121 R identified by match to protein family HMM PF03180; twin-arginine translocation pathway signal complement(629204..630121) Campylobacter fetus subsp. fetus 82-40 4538586 YP_891798.1 CDS CFF8240_0622 NC_008599.1 630118 631182 R acyl-CoA dehydrogenase complement(630118..631182) Campylobacter fetus subsp. fetus 82-40 4538209 YP_891799.1 CDS CFF8240_0623 NC_008599.1 631200 631730 R identified by match to protein family HMM PF02566; hypothetical protein complement(631200..631730) Campylobacter fetus subsp. fetus 82-40 4538596 YP_891800.1 CDS CFF8240_0624 NC_008599.1 631932 634133 D MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 631932..634133 Campylobacter fetus subsp. fetus 82-40 4539238 YP_891801.1 CDS CFF8240_0625 NC_008599.1 634200 636110 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; diguanylate cyclase/phosphodiesterase 634200..636110 Campylobacter fetus subsp. fetus 82-40 4537753 YP_891802.1 CDS CFF8240_0626 NC_008599.1 636120 636722 D identified by match to protein family HMM PF01810; amino acid transporter LysE 636120..636722 Campylobacter fetus subsp. fetus 82-40 4539388 YP_891803.1 CDS dapE NC_008599.1 636725 637822 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 636725..637822 Campylobacter fetus subsp. fetus 82-40 4539071 YP_891804.1 CDS CFF8240_0628 NC_008599.1 637904 639256 D identified by match to protein family HMM PF01266; match to protein family HMM PF06039; malate:quinone oxidoreductase 637904..639256 Campylobacter fetus subsp. fetus 82-40 4538461 YP_891805.1 CDS CFF8240_0629 NC_008599.1 639240 639959 D hypothetical protein 639240..639959 Campylobacter fetus subsp. fetus 82-40 4538114 YP_891806.1 CDS pyk NC_008599.1 640018 641466 D identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 640018..641466 Campylobacter fetus subsp. fetus 82-40 4539509 YP_891807.1 CDS CFF8240_0631 NC_008599.1 641482 642705 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; processing protease 641482..642705 Campylobacter fetus subsp. fetus 82-40 4538000 YP_891808.1 CDS CFF8240_0632 NC_008599.1 642695 644503 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 642695..644503 Campylobacter fetus subsp. fetus 82-40 4538325 YP_891809.1 CDS CFF8240_0633 NC_008599.1 644762 646105 D identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358; 3-deoxy-7-phosphoheptulonate synthase 644762..646105 Campylobacter fetus subsp. fetus 82-40 4537820 YP_891810.1 CDS proA NC_008599.1 646267 647490 R identified by match to protein family HMM TIGR00407; gamma-glutamyl phosphate reductase complement(646267..647490) Campylobacter fetus subsp. fetus 82-40 4539349 YP_891811.1 CDS CFF8240_0635 NC_008599.1 647569 648522 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; oxidoreductase 647569..648522 Campylobacter fetus subsp. fetus 82-40 4538300 YP_891812.1 CDS CFF8240_0636 NC_008599.1 648532 650454 D putative vesicular transport factor Uso1p 648532..650454 Campylobacter fetus subsp. fetus 82-40 4538963 YP_891813.1 CDS CFF8240_0637 NC_008599.1 650451 651146 D identified by match to protein family HMM PF05175; methyltransferase small 650451..651146 Campylobacter fetus subsp. fetus 82-40 4539098 YP_891814.1 CDS CFF8240_0638 NC_008599.1 651140 651511 D identified by match to protein family HMM PF03692; hypothetical protein 651140..651511 Campylobacter fetus subsp. fetus 82-40 4538496 YP_891815.1 CDS CFF8240_0639 NC_008599.1 651622 652782 D hypothetical protein 651622..652782 Campylobacter fetus subsp. fetus 82-40 4538982 YP_891816.1 CDS trpC NC_008599.1 652779 653555 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 652779..653555 Campylobacter fetus subsp. fetus 82-40 4538803 YP_891817.1 CDS CFF8240_0641 NC_008599.1 653555 654061 D identified by match to protein family HMM PF01230; Hit family protein 653555..654061 Campylobacter fetus subsp. fetus 82-40 4537944 YP_891818.1 CDS CFF8240_0642 NC_008599.1 654058 654795 D identified by match to protein family HMM PF03883; hypothetical protein 654058..654795 Campylobacter fetus subsp. fetus 82-40 4538171 YP_891819.1 CDS CFF8240_0644 NC_008599.1 656773 657564 D hypothetical protein 656773..657564 Campylobacter fetus subsp. fetus 82-40 4538579 YP_891820.1 CDS CFF8240_0645 NC_008599.1 657522 657854 D hypothetical protein 657522..657854 Campylobacter fetus subsp. fetus 82-40 4538635 YP_891821.1 CDS CFF8240_0646 NC_008599.1 657895 658101 D hypothetical protein 657895..658101 Campylobacter fetus subsp. fetus 82-40 4537796 YP_891822.1 CDS CFF8240_0647 NC_008599.1 658082 658315 D carbamoyl-phosphate synthase large subunit 658082..658315 Campylobacter fetus subsp. fetus 82-40 4538226 YP_891823.1 CDS CFF8240_0648 NC_008599.1 658413 658826 R hypothetical protein complement(658413..658826) Campylobacter fetus subsp. fetus 82-40 4537755 YP_891824.1 CDS CFF8240_0649 NC_008599.1 658823 660394 R identified by match to protein family HMM PF03237; hypothetical protein complement(658823..660394) Campylobacter fetus subsp. fetus 82-40 4537775 YP_891825.1 CDS CFF8240_0650 NC_008599.1 660498 661559 R identified by match to protein family HMM PF04860; phage portal protein complement(660498..661559) Campylobacter fetus subsp. fetus 82-40 4539267 YP_891826.1 CDS CFF8240_0651 NC_008599.1 661691 662428 D hypothetical protein 661691..662428 Campylobacter fetus subsp. fetus 82-40 4538749 YP_891827.1 CDS CFF8240_0652 NC_008599.1 662428 663363 D hypothetical protein 662428..663363 Campylobacter fetus subsp. fetus 82-40 4538093 YP_891828.1 CDS CFF8240_0653 NC_008599.1 663353 663652 D hypothetical protein 663353..663652 Campylobacter fetus subsp. fetus 82-40 4537906 YP_891829.1 CDS CFF8240_0654 NC_008599.1 663872 664003 D hypothetical protein 663872..664003 Campylobacter fetus subsp. fetus 82-40 4538716 YP_891830.1 CDS CFF8240_0655 NC_008599.1 663996 664694 D hypothetical protein 663996..664694 Campylobacter fetus subsp. fetus 82-40 4538957 YP_891831.1 CDS CFF8240_0656 NC_008599.1 664684 665148 D hypothetical protein 664684..665148 Campylobacter fetus subsp. fetus 82-40 4539563 YP_891832.1 CDS CFF8240_0658 NC_008599.1 665178 665393 D hypothetical protein 665178..665393 Campylobacter fetus subsp. fetus 82-40 4537751 YP_891833.1 CDS CFF8240_0657 NC_008599.1 665390 665563 R hypothetical protein complement(665390..665563) Campylobacter fetus subsp. fetus 82-40 4539157 YP_891834.1 CDS cas NC_008599.1 665850 666566 D identified by match to protein family HMM TIGR01877; CRISPR-associated protein Cas6 665850..666566 Campylobacter fetus subsp. fetus 82-40 4537864 YP_891835.1 CDS CFF8240_0660 NC_008599.1 666834 668246 D hypothetical protein 666834..668246 Campylobacter fetus subsp. fetus 82-40 4538639 YP_891836.1 CDS CFF8240_0661 NC_008599.1 668230 669183 D hypothetical protein 668230..669183 Campylobacter fetus subsp. fetus 82-40 4538958 YP_891837.1 CDS cas5h NC_008599.1 669180 669941 D identified by match to protein family HMM TIGR02592; match to protein family HMM TIGR02593; CRISPR-associated protein Cas5, hmari subtype 669180..669941 Campylobacter fetus subsp. fetus 82-40 4538681 YP_891838.1 CDS cas NC_008599.1 670094 672310 D identified by match to protein family HMM PF00271; match to protein family HMM TIGR01587; CRISPR-associated helicase Cas3 domain-containing protein 670094..672310 Campylobacter fetus subsp. fetus 82-40 4538482 YP_891839.1 CDS CFF8240_0664 NC_008599.1 672307 672792 D identified by match to protein family HMM PF01930; CRISPR-associated protein Cas4 672307..672792 Campylobacter fetus subsp. fetus 82-40 4538085 YP_891840.1 CDS cas NC_008599.1 672834 673802 D identified by match to protein family HMM PF01867; match to protein family HMM TIGR00287; CRISPR-associated protein Cas1 672834..673802 Campylobacter fetus subsp. fetus 82-40 4538619 YP_891841.1 CDS cas NC_008599.1 673799 674098 D identified by match to protein family HMM TIGR01573; CRISPR-associated protein Cas2 673799..674098 Campylobacter fetus subsp. fetus 82-40 4539380 YP_891842.1 CDS CFF8240_0667 NC_008599.1 674648 674779 D hypothetical protein 674648..674779 Campylobacter fetus subsp. fetus 82-40 4537918 YP_891843.1 CDS CFF8240_0668 NC_008599.1 675359 675487 D hypothetical protein 675359..675487 Campylobacter fetus subsp. fetus 82-40 4538937 YP_891844.1 CDS CFF8240_0669 NC_008599.1 676320 676790 D hypothetical protein 676320..676790 Campylobacter fetus subsp. fetus 82-40 4538197 YP_891845.1 CDS CFF8240_0670 NC_008599.1 676925 677416 R DNA adenine methylase complement(676925..677416) Campylobacter fetus subsp. fetus 82-40 4539032 YP_891846.1 CDS CFF8240_0671 NC_008599.1 677608 678390 D hypothetical protein 677608..678390 Campylobacter fetus subsp. fetus 82-40 4539421 YP_891847.1 CDS CFF8240_0672 NC_008599.1 678366 678662 D hypothetical protein 678366..678662 Campylobacter fetus subsp. fetus 82-40 4539324 YP_891848.1 CDS CFF8240_0673 NC_008599.1 678703 678909 D hypothetical protein 678703..678909 Campylobacter fetus subsp. fetus 82-40 4539555 YP_891849.1 CDS CFF8240_0674 NC_008599.1 679070 679318 R hypothetical protein complement(679070..679318) Campylobacter fetus subsp. fetus 82-40 4538630 YP_891850.1 CDS CFF8240_0675 NC_008599.1 679469 679642 R hypothetical protein complement(679469..679642) Campylobacter fetus subsp. fetus 82-40 4539037 YP_891851.1 CDS CFF8240_0676 NC_008599.1 680200 681645 D biotin carboxylase; catalyses the carboxylation of the carrier protein which then transfers the carboxyl group to form malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase subunit A 680200..681645 Campylobacter fetus subsp. fetus 82-40 4539365 YP_891852.1 CDS CFF8240_0677 NC_008599.1 681652 681888 D hypothetical protein 681652..681888 Campylobacter fetus subsp. fetus 82-40 4537756 YP_891853.1 CDS CFF8240_0678 NC_008599.1 681875 682591 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 681875..682591 Campylobacter fetus subsp. fetus 82-40 4539285 YP_891854.1 CDS CFF8240_0679 NC_008599.1 682648 683472 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 682648..683472 Campylobacter fetus subsp. fetus 82-40 4539368 YP_891855.1 CDS pdxJ NC_008599.1 683517 684290 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 683517..684290 Campylobacter fetus subsp. fetus 82-40 4538537 YP_891856.1 CDS pdxA NC_008599.1 684287 685210 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 684287..685210 Campylobacter fetus subsp. fetus 82-40 4538213 YP_891857.1 CDS CFF8240_0682 NC_008599.1 685276 686826 D identified by match to protein family HMM PF01384; phosphate transporter family protein 685276..686826 Campylobacter fetus subsp. fetus 82-40 4538290 YP_891858.1 CDS CFF8240_0683 NC_008599.1 686898 689741 D identified by match to protein family HMM PF00669; flagellar hook-associated protein 686898..689741 Campylobacter fetus subsp. fetus 82-40 4538673 YP_891859.1 CDS CFF8240_0684 NC_008599.1 689803 691950 D identified by match to protein family HMM PF01580; DNA translocase FtsK 689803..691950 Campylobacter fetus subsp. fetus 82-40 4538707 YP_891860.1 CDS CFF8240_0685 NC_008599.1 692017 692280 D hypothetical protein 692017..692280 Campylobacter fetus subsp. fetus 82-40 4539045 YP_891861.1 CDS CFF8240_0686 NC_008599.1 692273 692698 D hypothetical protein 692273..692698 Campylobacter fetus subsp. fetus 82-40 4539086 YP_891862.1 CDS CFF8240_0687 NC_008599.1 692699 693583 D identified by match to protein family HMM PF00348; polyprenyl synthetase 692699..693583 Campylobacter fetus subsp. fetus 82-40 4539216 YP_891863.1 CDS hemA NC_008599.1 693583 694851 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 693583..694851 Campylobacter fetus subsp. fetus 82-40 4539153 YP_891864.1 CDS proS NC_008599.1 694848 696551 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 694848..696551 Campylobacter fetus subsp. fetus 82-40 4537884 YP_891865.1 CDS CFF8240_0690 NC_008599.1 696548 696940 D hypothetical protein 696548..696940 Campylobacter fetus subsp. fetus 82-40 4539528 YP_891866.1 CDS hemC NC_008599.1 696953 697864 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 696953..697864 Campylobacter fetus subsp. fetus 82-40 4539283 YP_891867.1 CDS CFF8240_0692 NC_008599.1 697870 698670 R identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; ribonuclease BN complement(697870..698670) Campylobacter fetus subsp. fetus 82-40 4538413 YP_891868.1 CDS CFF8240_0693 NC_008599.1 698680 700059 R identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD complement(698680..700059) Campylobacter fetus subsp. fetus 82-40 4537848 YP_891869.1 CDS CFF8240_0694 NC_008599.1 700061 700777 R hypothetical protein complement(700061..700777) Campylobacter fetus subsp. fetus 82-40 4538453 YP_891870.1 CDS CFF8240_0695 NC_008599.1 700946 701077 D hypothetical protein 700946..701077 Campylobacter fetus subsp. fetus 82-40 4539244 YP_891871.1 CDS CFF8240_0696 NC_008599.1 701525 702691 D identified by match to protein family HMM PF01551; M24/M37 family peptidase 701525..702691 Campylobacter fetus subsp. fetus 82-40 4538792 YP_891872.1 CDS mgtE NC_008599.1 702700 704061 D identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 702700..704061 Campylobacter fetus subsp. fetus 82-40 4538214 YP_891873.1 CDS CFF8240_0698 NC_008599.1 704046 704630 D identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; NUDIX domain-containing protein 704046..704630 Campylobacter fetus subsp. fetus 82-40 4539439 YP_891874.1 CDS CFF8240_0699 NC_008599.1 704638 707187 R hypothetical protein complement(704638..707187) Campylobacter fetus subsp. fetus 82-40 4537916 YP_891875.1 CDS groES NC_008599.1 707404 707667 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 707404..707667 Campylobacter fetus subsp. fetus 82-40 4539394 YP_891876.1 CDS groEL NC_008599.1 707685 709322 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 707685..709322 Campylobacter fetus subsp. fetus 82-40 4537833 YP_891877.1 CDS hemH NC_008599.1 709480 710424 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 709480..710424 Campylobacter fetus subsp. fetus 82-40 4538174 YP_891878.1 CDS CFF8240_0702 NC_008599.1 710416 712236 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein complement(710416..712236) Campylobacter fetus subsp. fetus 82-40 4539472 YP_891879.1 CDS fliE NC_008599.1 712236 712523 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(712236..712523) Campylobacter fetus subsp. fetus 82-40 4538324 YP_891880.1 CDS flgC NC_008599.1 712527 713021 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(712527..713021) Campylobacter fetus subsp. fetus 82-40 4538717 YP_891881.1 CDS flgB NC_008599.1 713031 713471 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB complement(713031..713471) Campylobacter fetus subsp. fetus 82-40 4538670 YP_891882.1 CDS aat NC_008599.1 713517 714179 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(713517..714179) Campylobacter fetus subsp. fetus 82-40 4538273 YP_891883.1 CDS CFF8240_0708 NC_008599.1 714176 715030 R hypothetical protein complement(714176..715030) Campylobacter fetus subsp. fetus 82-40 4538678 YP_891884.1 CDS CFF8240_0709 NC_008599.1 715027 717225 R identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; ATP-dependent Clp protease ATP-binding subunit ClpA complement(715027..717225) Campylobacter fetus subsp. fetus 82-40 4538227 YP_891885.1 CDS clpS NC_008599.1 717225 717524 R identified by match to protein family HMM PF02617; ATP-dependent Clp protease adaptor protein ClpS complement(717225..717524) Campylobacter fetus subsp. fetus 82-40 4539362 YP_891886.1 CDS CFF8240_0711 NC_008599.1 717514 718110 R thioredoxin domain-containing protein complement(717514..718110) Campylobacter fetus subsp. fetus 82-40 4538198 YP_891887.1 CDS smpB NC_008599.1 718128 718583 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(718128..718583) Campylobacter fetus subsp. fetus 82-40 4539419 YP_891888.1 CDS CFF8240_0713 NC_008599.1 718796 719536 R catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(718796..719536) Campylobacter fetus subsp. fetus 82-40 4539566 YP_891889.1 CDS csrA NC_008599.1 719533 719760 R identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator complement(719533..719760) Campylobacter fetus subsp. fetus 82-40 4538581 YP_891890.1 CDS truB NC_008599.1 719744 720580 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(719744..720580) Campylobacter fetus subsp. fetus 82-40 4538024 YP_891891.1 CDS CFF8240_0716 NC_008599.1 720577 722634 R identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA complement(720577..722634) Campylobacter fetus subsp. fetus 82-40 4539104 YP_891892.1 CDS CFF8240_0718 NC_008599.1 722868 723740 D identified by match to protein family HMM PF00126; transcriptional regulator 722868..723740 Campylobacter fetus subsp. fetus 82-40 4539479 YP_891893.1 CDS CFF8240_0717 NC_008599.1 723730 724173 R hypothetical protein complement(723730..724173) Campylobacter fetus subsp. fetus 82-40 4539460 YP_891894.1 CDS CFF8240_0719 NC_008599.1 724183 725892 R identified by match to protein family HMM PF01432; oligoendopeptidase F complement(724183..725892) Campylobacter fetus subsp. fetus 82-40 4539277 YP_891895.1 CDS CFF8240_0720 NC_008599.1 725982 727211 R involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT complement(725982..727211) Campylobacter fetus subsp. fetus 82-40 4537793 YP_891896.1 CDS metK NC_008599.1 727371 728567 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 727371..728567 Campylobacter fetus subsp. fetus 82-40 4538899 YP_891897.1 CDS CFF8240_0722 NC_008599.1 728839 729711 D identified by match to protein family HMM PF01297; protein AfeA 728839..729711 Campylobacter fetus subsp. fetus 82-40 4538260 YP_891898.1 CDS CFF8240_0723 NC_008599.1 729698 730540 D identified by match to protein family HMM PF00005; protein AfeB 729698..730540 Campylobacter fetus subsp. fetus 82-40 4538726 YP_891899.1 CDS CFF8240_0724 NC_008599.1 730515 731339 D identified by match to protein family HMM PF00950; protein AfeC 730515..731339 Campylobacter fetus subsp. fetus 82-40 4539168 YP_891900.1 CDS CFF8240_0726 NC_008599.1 731320 732135 D identified by match to protein family HMM PF00950; protein AfeD 731320..732135 Campylobacter fetus subsp. fetus 82-40 4538808 YP_891901.1 CDS lnt NC_008599.1 732122 733357 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(732122..733357) Campylobacter fetus subsp. fetus 82-40 4538632 YP_891902.1 CDS yajC NC_008599.1 733360 733641 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 733360..733641 Campylobacter fetus subsp. fetus 82-40 4539565 YP_891903.1 CDS secD NC_008599.1 733634 735223 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 733634..735223 Campylobacter fetus subsp. fetus 82-40 4538511 YP_891904.1 CDS secF NC_008599.1 735223 736194 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 735223..736194 Campylobacter fetus subsp. fetus 82-40 4538640 YP_891905.1 CDS CFF8240_0730 NC_008599.1 736204 736542 D hypothetical protein 736204..736542 Campylobacter fetus subsp. fetus 82-40 4538296 YP_891906.1 CDS leuS NC_008599.1 736551 738986 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 736551..738986 Campylobacter fetus subsp. fetus 82-40 4539205 YP_891907.1 CDS CFF8240_0732 NC_008599.1 738988 739527 D hypothetical protein 738988..739527 Campylobacter fetus subsp. fetus 82-40 4538577 YP_891908.1 CDS CFF8240_0733 NC_008599.1 739508 741052 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 739508..741052 Campylobacter fetus subsp. fetus 82-40 4538175 YP_891909.1 CDS folC NC_008599.1 741052 742221 D identified by match to protein family HMM TIGR01499; folylpolyglutamate synthase 741052..742221 Campylobacter fetus subsp. fetus 82-40 4538036 YP_891910.1 CDS CFF8240_0735 NC_008599.1 742211 743101 D identified by match to protein family HMM PF01551; M24/M37 family peptidase 742211..743101 Campylobacter fetus subsp. fetus 82-40 4539197 YP_891911.1 CDS CFF8240_0736 NC_008599.1 743050 743463 D identified by match to protein family HMM PF04519; hypothetical protein 743050..743463 Campylobacter fetus subsp. fetus 82-40 4538467 YP_891912.1 CDS mfd NC_008599.1 743444 746401 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 743444..746401 Campylobacter fetus subsp. fetus 82-40 4538564 YP_891913.1 CDS CFF8240_0738 NC_008599.1 746398 747003 D hypothetical protein 746398..747003 Campylobacter fetus subsp. fetus 82-40 4539535 YP_891914.1 CDS CFF8240_0739 NC_008599.1 747025 747771 D hypothetical protein 747025..747771 Campylobacter fetus subsp. fetus 82-40 4537804 YP_891915.1 CDS CFF8240_0740 NC_008599.1 747761 748426 D identified by match to protein family HMM PF00730; endonuclease III 747761..748426 Campylobacter fetus subsp. fetus 82-40 4538165 YP_891916.1 CDS CFF8240_0741 NC_008599.1 748482 748883 D identified by match to protein family HMM PF04076; protein YgiW 748482..748883 Campylobacter fetus subsp. fetus 82-40 4538969 YP_891917.1 CDS CFF8240_0742 NC_008599.1 748953 749432 D identified by match to protein family HMM PF02629; CoA-binding domain-containing protein 748953..749432 Campylobacter fetus subsp. fetus 82-40 4538303 YP_891918.1 CDS ilvA NC_008599.1 749416 750627 D catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 749416..750627 Campylobacter fetus subsp. fetus 82-40 4538992 YP_891919.1 CDS CFF8240_0744 NC_008599.1 750879 756116 D identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901; hemagglutination activity domain-containing protein 750879..756116 Campylobacter fetus subsp. fetus 82-40 4538222 YP_891920.1 CDS CFF8240_0745 NC_008599.1 756117 757760 D identified by match to protein family HMM PF03865; hemolysin secretion/activation protein ShlB/FhaC/HecB 756117..757760 Campylobacter fetus subsp. fetus 82-40 4538126 YP_891921.1 CDS CFF8240_0746 NC_008599.1 757786 757911 R hypothetical protein complement(757786..757911) Campylobacter fetus subsp. fetus 82-40 4538872 YP_891922.1 CDS truA NC_008599.1 757908 758684 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(757908..758684) Campylobacter fetus subsp. fetus 82-40 4539405 YP_891923.1 CDS CFF8240_0748 NC_008599.1 758681 759706 R identified by match to protein family HMM PF03739; YjgP/YjgQ permease complement(758681..759706) Campylobacter fetus subsp. fetus 82-40 4538858 YP_891924.1 CDS pilD NC_008599.1 759706 760506 R identified by match to protein family HMM PF06750; type IV pilus prepilin peptidase PilD complement(759706..760506) Campylobacter fetus subsp. fetus 82-40 4538900 YP_891925.1 CDS uppS NC_008599.1 760506 761183 R identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase complement(760506..761183) Campylobacter fetus subsp. fetus 82-40 4539144 YP_891926.1 CDS CFF8240_0751 NC_008599.1 761186 761863 R hypothetical protein complement(761186..761863) Campylobacter fetus subsp. fetus 82-40 4539329 YP_891927.1 CDS coaBC NC_008599.1 761860 763023 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(761860..763023) Campylobacter fetus subsp. fetus 82-40 4538608 YP_891928.1 CDS glmU NC_008599.1 763013 764323 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(763013..764323) Campylobacter fetus subsp. fetus 82-40 4537914 YP_891929.1 CDS fliP NC_008599.1 764530 765264 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 764530..765264 Campylobacter fetus subsp. fetus 82-40 4539186 YP_891930.1 CDS CFF8240_0754 NC_008599.1 765257 766111 R hypothetical protein complement(765257..766111) Campylobacter fetus subsp. fetus 82-40 4539541 YP_891931.1 CDS CFF8240_0756 NC_008599.1 766135 767040 R identified by match to protein family HMM PF03547; putative integral membrane protein complement(766135..767040) Campylobacter fetus subsp. fetus 82-40 4538471 YP_891932.1 CDS nadA NC_008599.1 767239 768252 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(767239..768252) Campylobacter fetus subsp. fetus 82-40 4539432 YP_891933.1 CDS CFF8240_0758 NC_008599.1 768761 769945 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; macrolide-specific efflux protein MacA 768761..769945 Campylobacter fetus subsp. fetus 82-40 4539248 YP_891934.1 CDS CFF8240_0759 NC_008599.1 769942 771867 D identified by match to protein family HMM PF00005; match to protein family HMM PF02687; macrolide-specific ABC-type efflux carrier 769942..771867 Campylobacter fetus subsp. fetus 82-40 4539105 YP_891935.1 CDS CFF8240_0760 NC_008599.1 771870 773168 D identified by match to protein family HMM PF02321; outer membrane efflux protein 771870..773168 Campylobacter fetus subsp. fetus 82-40 4537895 YP_891936.1 CDS CFF8240_0761 NC_008599.1 773169 774428 D identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; ComEC/Rec2 family protein 773169..774428 Campylobacter fetus subsp. fetus 82-40 4538365 YP_891937.1 CDS CFF8240_0762 NC_008599.1 774435 775667 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; sensor histidine kinase complement(774435..775667) Campylobacter fetus subsp. fetus 82-40 4539007 YP_891938.1 CDS CFF8240_0763 NC_008599.1 775664 776338 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(775664..776338) Campylobacter fetus subsp. fetus 82-40 4538075 YP_891939.1 CDS CFF8240_0764 NC_008599.1 776425 777840 R identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; peptidase S1C, Do complement(776425..777840) Campylobacter fetus subsp. fetus 82-40 4538154 YP_891940.1 CDS CFF8240_0765 NC_008599.1 778050 778922 D identified by match to protein family HMM PF00226; match to protein family HMM PF01556; co-chaperone protein DnaJ 778050..778922 Campylobacter fetus subsp. fetus 82-40 4539289 YP_891941.1 CDS CFF8240_0766 NC_008599.1 778934 779305 D identified by match to protein family HMM PF00376; putative heat shock protein HspR 778934..779305 Campylobacter fetus subsp. fetus 82-40 4537957 YP_891942.1 CDS CFF8240_0767 NC_008599.1 779311 780930 D identified by match to protein family HMM PF00999; match to protein family HMM PF02254; sodium/hydrogen exchanger family protein 779311..780930 Campylobacter fetus subsp. fetus 82-40 4539189 YP_891943.1 CDS CFF8240_0768 NC_008599.1 780943 782379 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 780943..782379 Campylobacter fetus subsp. fetus 82-40 4538162 YP_891944.1 CDS CFF8240_0769 NC_008599.1 782439 783011 D hypothetical protein 782439..783011 Campylobacter fetus subsp. fetus 82-40 4539038 YP_891945.1 CDS CFF8240_0770 NC_008599.1 783084 783857 D identified by match to protein family HMM PF01925; inner membrane protein YfcA 783084..783857 Campylobacter fetus subsp. fetus 82-40 4537909 YP_891946.1 CDS atpB NC_008599.1 783911 784591 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 783911..784591 Campylobacter fetus subsp. fetus 82-40 4538366 YP_891947.1 CDS CFF8240_0772 NC_008599.1 784596 784814 D hypothetical protein 784596..784814 Campylobacter fetus subsp. fetus 82-40 4538394 YP_891948.1 CDS CFF8240_0773 NC_008599.1 784786 785322 D identified by match to protein family HMM PF02581; thiamine monophosphate synthase 784786..785322 Campylobacter fetus subsp. fetus 82-40 4538835 YP_891949.1 CDS gatB NC_008599.1 785380 786798 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 785380..786798 Campylobacter fetus subsp. fetus 82-40 4538145 YP_891950.1 CDS gpsA NC_008599.1 786810 787700 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 786810..787700 Campylobacter fetus subsp. fetus 82-40 4538015 YP_891951.1 CDS CFF8240_0777 NC_008599.1 787697 788761 D identified by match to protein family HMM PF00933; glycosyl hydrolase family protein 787697..788761 Campylobacter fetus subsp. fetus 82-40 4537982 YP_891952.1 CDS CFF8240_0776 NC_008599.1 788756 789190 R hypothetical protein complement(788756..789190) Campylobacter fetus subsp. fetus 82-40 4537791 YP_891953.1 CDS rarD NC_008599.1 789183 790055 R identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688; RarD protein complement(789183..790055) Campylobacter fetus subsp. fetus 82-40 4538498 YP_891954.1 CDS CFF8240_0779 NC_008599.1 790067 790813 R identified by match to protein family HMM PF00005; amino acid ABC transporter ATP-binding protein complement(790067..790813) Campylobacter fetus subsp. fetus 82-40 4539293 YP_891955.1 CDS CFF8240_0780 NC_008599.1 790822 791454 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino-acid ABC transporter permease YckJ complement(790822..791454) Campylobacter fetus subsp. fetus 82-40 4538352 YP_891956.1 CDS CFF8240_0781 NC_008599.1 791477 792235 R identified by match to protein family HMM PF00497; amino-acid ABC transporter extracellular-binding protein yckK complement(791477..792235) Campylobacter fetus subsp. fetus 82-40 4539224 YP_891957.1 CDS pgsA NC_008599.1 792364 792909 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(792364..792909) Campylobacter fetus subsp. fetus 82-40 4539398 YP_891958.1 CDS CFF8240_0783 NC_008599.1 792906 793694 R Acts on the hydroxyl group at position 7 of the steroid frame; 7-alpha-hydroxysteroid dehydrogenase complement(792906..793694) Campylobacter fetus subsp. fetus 82-40 4539009 YP_891959.1 CDS dapA NC_008599.1 793694 794587 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(793694..794587) Campylobacter fetus subsp. fetus 82-40 4538939 YP_891960.1 CDS CFF8240_0785 NC_008599.1 794584 795831 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase complement(794584..795831) Campylobacter fetus subsp. fetus 82-40 4537855 YP_891961.1 CDS pyrD NC_008599.1 795832 796890 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(795832..796890) Campylobacter fetus subsp. fetus 82-40 4537870 YP_891962.1 CDS CFF8240_0787 NC_008599.1 796942 798660 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; lipid export ABC transport protein complement(796942..798660) Campylobacter fetus subsp. fetus 82-40 4539367 YP_891963.1 CDS cysS NC_008599.1 798657 800036 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(798657..800036) Campylobacter fetus subsp. fetus 82-40 4539138 YP_891964.1 CDS mviN NC_008599.1 800020 801420 R identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN complement(800020..801420) Campylobacter fetus subsp. fetus 82-40 4539538 YP_891965.1 CDS CFF8240_0790 NC_008599.1 801542 801658 R hypothetical protein complement(801542..801658) Campylobacter fetus subsp. fetus 82-40 4538567 YP_891966.1 CDS CFF8240_0791 NC_008599.1 801778 803652 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; putative ATP-dependent RNA helicase RhlE 801778..803652 Campylobacter fetus subsp. fetus 82-40 4539444 YP_891967.1 CDS CFF8240_0792 NC_008599.1 803859 804011 D plasmid-related lipoprotein 803859..804011 Campylobacter fetus subsp. fetus 82-40 4538757 YP_891968.1 CDS mobB NC_008599.1 804726 805277 D identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein B 804726..805277 Campylobacter fetus subsp. fetus 82-40 4538459 YP_891969.1 CDS fbp NC_008599.1 805261 806121 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 805261..806121 Campylobacter fetus subsp. fetus 82-40 4538411 YP_891970.1 CDS CFF8240_0795 NC_008599.1 806342 806443 D hypothetical protein 806342..806443 Campylobacter fetus subsp. fetus 82-40 4538451 YP_891971.1 CDS metG NC_008599.1 806462 808360 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 806462..808360 Campylobacter fetus subsp. fetus 82-40 4538702 YP_891972.1 CDS CFF8240_0797 NC_008599.1 808360 809340 D hypothetical protein 808360..809340 Campylobacter fetus subsp. fetus 82-40 4538901 YP_891973.1 CDS CFF8240_0798 NC_008599.1 809356 809997 D identified by match to protein family HMM PF00027; match to protein family HMM PF00325; transcriptional regulator 809356..809997 Campylobacter fetus subsp. fetus 82-40 4538125 YP_891974.1 CDS CFF8240_0799 NC_008599.1 810126 810677 D identified by match to protein family HMM PF03264; putative tetraheme cytochrome c 810126..810677 Campylobacter fetus subsp. fetus 82-40 4539371 YP_891975.1 CDS CFF8240_0800 NC_008599.1 810689 812074 D hydroxylamine oxidase 810689..812074 Campylobacter fetus subsp. fetus 82-40 4538519 YP_891976.1 CDS CFF8240_0801 NC_008599.1 812926 813972 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; hypothetical protein complement(812926..813972) Campylobacter fetus subsp. fetus 82-40 4538903 YP_891977.1 CDS CFF8240_0802 NC_008599.1 814144 814518 D copper homeostasis protein CutF 814144..814518 Campylobacter fetus subsp. fetus 82-40 4539070 YP_891978.1 CDS CFF8240_0804 NC_008599.1 814515 815708 D identified by match to protein family HMM PF04332; match to protein family HMM PF07690; putative integral membrane protein 814515..815708 Campylobacter fetus subsp. fetus 82-40 4538998 YP_891979.1 CDS cheR NC_008599.1 815703 816497 R identified by match to protein family HMM PF01739; CheR methyltransferase SAM-binding domain-containing protein complement(815703..816497) Campylobacter fetus subsp. fetus 82-40 4538417 YP_891980.1 CDS CFF8240_0805 NC_008599.1 816490 817056 R identified by match to protein family HMM PF01339; chemotaxis response regulator protein-glutamate methylesterase complement(816490..817056) Campylobacter fetus subsp. fetus 82-40 4538184 YP_891981.1 CDS CFF8240_0806 NC_008599.1 817267 819147 D hypothetical protein 817267..819147 Campylobacter fetus subsp. fetus 82-40 4537851 YP_891982.1 CDS ruvA NC_008599.1 819150 819704 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 819150..819704 Campylobacter fetus subsp. fetus 82-40 4538368 YP_891983.1 CDS ddl NC_008599.1 819713 820750 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 819713..820750 Campylobacter fetus subsp. fetus 82-40 4539276 YP_891984.1 CDS CFF8240_0809 NC_008599.1 820819 821055 D hypothetical protein 820819..821055 Campylobacter fetus subsp. fetus 82-40 4539392 YP_891985.1 CDS CFF8240_0810 NC_008599.1 821045 821839 D alpha/beta hydrolase 821045..821839 Campylobacter fetus subsp. fetus 82-40 4538377 YP_891986.1 CDS CFF8240_0811 NC_008599.1 821832 823268 D Mur ligase family protein 821832..823268 Campylobacter fetus subsp. fetus 82-40 4539516 YP_891987.1 CDS ackA NC_008599.1 823333 824532 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(823333..824532) Campylobacter fetus subsp. fetus 82-40 4539069 YP_891988.1 CDS CFF8240_0813 NC_008599.1 824533 825927 R identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651; phosphate acetyltransferase complement(824533..825927) Campylobacter fetus subsp. fetus 82-40 4539475 YP_891989.1 CDS flgH NC_008599.1 826003 826707 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 826003..826707 Campylobacter fetus subsp. fetus 82-40 4538853 YP_891990.1 CDS CFF8240_0815 NC_008599.1 826892 827515 D identified by match to protein family HMM PF03713; hypothetical protein 826892..827515 Campylobacter fetus subsp. fetus 82-40 4538053 YP_891991.1 CDS ilvB NC_008599.1 827700 829376 D catalyzes the formation of 2-acetolactate from pyruvate, leucine resistant; also known as acetolactate synthase 3 large subunit; acetolactate synthase 3 catalytic subunit 827700..829376 Campylobacter fetus subsp. fetus 82-40 4538725 YP_891992.1 CDS ilvH NC_008599.1 829380 829841 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 829380..829841 Campylobacter fetus subsp. fetus 82-40 4538806 YP_891993.1 CDS lpxD NC_008599.1 829841 830788 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 829841..830788 Campylobacter fetus subsp. fetus 82-40 4537912 YP_891994.1 CDS CFF8240_0820 NC_008599.1 830785 831012 D hypothetical protein 830785..831012 Campylobacter fetus subsp. fetus 82-40 4539029 YP_891995.1 CDS dedA NC_008599.1 831009 831617 R DedA family protein complement(831009..831617) Campylobacter fetus subsp. fetus 82-40 4538095 YP_891996.1 CDS nadC NC_008599.1 831727 832557 D identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 831727..832557 Campylobacter fetus subsp. fetus 82-40 4538563 YP_891997.1 CDS purU NC_008599.1 832758 833588 D identified by match to protein family HMM PF00551; match to protein family HMM TIGR00655; formyltetrahydrofolate deformylase 832758..833588 Campylobacter fetus subsp. fetus 82-40 4538223 YP_891998.1 CDS CFF8240_0823 NC_008599.1 833589 834077 D identified by match to protein family HMM PF00588; tRNA/rRNA methyltransferase 833589..834077 Campylobacter fetus subsp. fetus 82-40 4538561 YP_891999.1 CDS CFF8240_0824 NC_008599.1 834065 835360 D identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase 834065..835360 Campylobacter fetus subsp. fetus 82-40 4539336 YP_892000.1 CDS CFF8240_0825 NC_008599.1 835353 835535 D hypothetical protein 835353..835535 Campylobacter fetus subsp. fetus 82-40 4539315 YP_892001.1 CDS glyS NC_008599.1 835642 837657 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 835642..837657 Campylobacter fetus subsp. fetus 82-40 4538432 YP_892002.1 CDS CFF8240_0827 NC_008599.1 837654 838742 D identified by match to protein family HMM PF02086; DNA modification methylase 837654..838742 Campylobacter fetus subsp. fetus 82-40 4538309 YP_892003.1 CDS CFF8240_0828 NC_008599.1 838778 839179 R hypothetical protein complement(838778..839179) Campylobacter fetus subsp. fetus 82-40 4539459 YP_892004.1 CDS CFF8240_0829 NC_008599.1 839176 839325 R hypothetical protein complement(839176..839325) Campylobacter fetus subsp. fetus 82-40 4539351 YP_892005.1 CDS CFF8240_0830 NC_008599.1 839423 840850 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino acid carrier protein complement(839423..840850) Campylobacter fetus subsp. fetus 82-40 4538653 YP_892006.1 CDS CFF8240_0831 NC_008599.1 840919 842994 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; metal transporting atpase Mta72 complement(840919..842994) Campylobacter fetus subsp. fetus 82-40 4538422 YP_892007.1 CDS CFF8240_0832 NC_008599.1 842981 843268 R hypothetical protein complement(842981..843268) Campylobacter fetus subsp. fetus 82-40 4539185 YP_892008.1 CDS CFF8240_0833 NC_008599.1 843265 843567 R hypothetical protein complement(843265..843567) Campylobacter fetus subsp. fetus 82-40 4538664 YP_892009.1 CDS CFF8240_0834 NC_008599.1 843600 843893 R hypothetical protein complement(843600..843893) Campylobacter fetus subsp. fetus 82-40 4538788 YP_892010.1 CDS CFF8240_0835 NC_008599.1 843886 844521 R hypothetical protein complement(843886..844521) Campylobacter fetus subsp. fetus 82-40 4537943 YP_892011.1 CDS CFF8240_0836 NC_008599.1 844511 844834 R hypothetical protein complement(844511..844834) Campylobacter fetus subsp. fetus 82-40 4539233 YP_892012.1 CDS CFF8240_0837 NC_008599.1 845017 845226 D hypothetical protein 845017..845226 Campylobacter fetus subsp. fetus 82-40 4537830 YP_892013.1 CDS CFF8240_0838 NC_008599.1 845294 846103 D identified by match to protein family HMM PF01551; M24/M37 family peptidase 845294..846103 Campylobacter fetus subsp. fetus 82-40 4538750 YP_892014.1 CDS CFF8240_0839 NC_008599.1 846167 846589 D hypothetical protein 846167..846589 Campylobacter fetus subsp. fetus 82-40 4539428 YP_892015.1 CDS CFF8240_0840 NC_008599.1 846590 847258 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional activator protein CopR 846590..847258 Campylobacter fetus subsp. fetus 82-40 4537904 YP_892016.1 CDS CFF8240_0841 NC_008599.1 847248 848372 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 847248..848372 Campylobacter fetus subsp. fetus 82-40 4538240 YP_892017.1 CDS argG NC_008599.1 848522 849745 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 848522..849745 Campylobacter fetus subsp. fetus 82-40 4538985 YP_892018.1 CDS CFF8240_0843 NC_008599.1 849810 850874 D identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 849810..850874 Campylobacter fetus subsp. fetus 82-40 4537907 YP_892019.1 CDS CFF8240_0844 NC_008599.1 851026 852210 D identified by match to protein family HMM PF01098; cell cycle protein FtsW 851026..852210 Campylobacter fetus subsp. fetus 82-40 4539016 YP_892020.1 CDS murG NC_008599.1 852207 853214 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 852207..853214 Campylobacter fetus subsp. fetus 82-40 4538541 YP_892021.1 CDS CFF8240_0846 NC_008599.1 853381 853695 D identified by match to protein family HMM PF00216; DNA-binding protein HU 853381..853695 Campylobacter fetus subsp. fetus 82-40 4538224 YP_892022.1 CDS exbB NC_008599.1 853938 854351 D identified by match to protein family HMM PF01618; match to protein family HMM TIGR02805; TonB-system energizer ExbB 853938..854351 Campylobacter fetus subsp. fetus 82-40 4538072 YP_892023.1 CDS expD NC_008599.1 854354 854740 D identified by match to protein family HMM PF02472; match to protein family HMM TIGR02804; TonB system transport protein ExbD 854354..854740 Campylobacter fetus subsp. fetus 82-40 4539462 YP_892024.1 CDS CFF8240_0849 NC_008599.1 854733 855482 D identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB 854733..855482 Campylobacter fetus subsp. fetus 82-40 4538062 YP_892025.1 CDS CFF8240_0850 NC_008599.1 855520 855765 D identified by match to protein family HMM PF01479; S4 domain-containing protein 855520..855765 Campylobacter fetus subsp. fetus 82-40 4538277 YP_892026.1 CDS CFF8240_0851 NC_008599.1 855749 856150 D identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 855749..856150 Campylobacter fetus subsp. fetus 82-40 4538285 YP_892027.1 CDS CFF8240_0852 NC_008599.1 856143 856871 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 856143..856871 Campylobacter fetus subsp. fetus 82-40 4538838 YP_892028.1 CDS rpoN NC_008599.1 856871 858109 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 856871..858109 Campylobacter fetus subsp. fetus 82-40 4538973 YP_892029.1 CDS aroB NC_008599.1 858196 859236 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 858196..859236 Campylobacter fetus subsp. fetus 82-40 4539063 YP_892030.1 CDS CFF8240_0855 NC_008599.1 859233 860813 D identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 859233..860813 Campylobacter fetus subsp. fetus 82-40 4539390 YP_892031.1 CDS CFF8240_0856 NC_008599.1 860810 862051 D identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; hypothetical protein 860810..862051 Campylobacter fetus subsp. fetus 82-40 4539461 YP_892032.1 CDS CFF8240_0857 NC_008599.1 862029 863699 D identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; atpase ec atp-dependent Zn protease 862029..863699 Campylobacter fetus subsp. fetus 82-40 4538146 YP_892033.1 CDS CFF8240_0858 NC_008599.1 863689 864219 D identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdopterin biosynthesis mog protein 863689..864219 Campylobacter fetus subsp. fetus 82-40 4537838 YP_892034.1 CDS CFF8240_0859 NC_008599.1 864475 865092 R identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein complement(864475..865092) Campylobacter fetus subsp. fetus 82-40 4539423 YP_892035.1 CDS rseP NC_008599.1 865089 866201 R identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; RIP metalloprotease RseP complement(865089..866201) Campylobacter fetus subsp. fetus 82-40 4538237 YP_892036.1 CDS rpe NC_008599.1 866330 866971 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 866330..866971 Campylobacter fetus subsp. fetus 82-40 4537999 YP_892037.1 CDS CFF8240_0863 NC_008599.1 866984 867781 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 866984..867781 Campylobacter fetus subsp. fetus 82-40 4539554 YP_892038.1 CDS priA NC_008599.1 867774 869606 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(867774..869606) Campylobacter fetus subsp. fetus 82-40 4538351 YP_892039.1 CDS CFF8240_0864 NC_008599.1 869614 870024 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; N-terminal methylation domain-containing protein complement(869614..870024) Campylobacter fetus subsp. fetus 82-40 4538512 YP_892040.1 CDS CFF8240_0865 NC_008599.1 870051 870812 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; N-terminal methylation domain-containing protein complement(870051..870812) Campylobacter fetus subsp. fetus 82-40 4539381 YP_892041.1 CDS CFF8240_0866 NC_008599.1 870809 871441 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; N-terminal methylation domain-containing protein complement(870809..871441) Campylobacter fetus subsp. fetus 82-40 4538206 YP_892042.1 CDS CFF8240_0867 NC_008599.1 871461 871577 R hypothetical protein complement(871461..871577) Campylobacter fetus subsp. fetus 82-40 4538176 YP_892043.1 CDS CFF8240_0868 NC_008599.1 871766 871969 R transformation system protein complement(871766..871969) Campylobacter fetus subsp. fetus 82-40 4538569 YP_892044.1 CDS CFF8240_0869 NC_008599.1 872056 872280 R hypothetical protein complement(872056..872280) Campylobacter fetus subsp. fetus 82-40 4539510 YP_892045.1 CDS CFF8240_0870 NC_008599.1 872277 872510 R hypothetical protein complement(872277..872510) Campylobacter fetus subsp. fetus 82-40 4538138 YP_892046.1 CDS uvrB NC_008599.1 872702 874678 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 872702..874678 Campylobacter fetus subsp. fetus 82-40 4538462 YP_892047.1 CDS CFF8240_0872 NC_008599.1 875040 876086 D identified by match to protein family HMM PF03929; putative iron-regulated membrane protein 875040..876086 Campylobacter fetus subsp. fetus 82-40 4538112 YP_892048.1 CDS CFF8240_0873 NC_008599.1 876113 878251 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; outer membrane receptor for Fe 876113..878251 Campylobacter fetus subsp. fetus 82-40 4539448 YP_892049.1 CDS CFF8240_0874 NC_008599.1 878575 879894 D identified by match to protein family HMM PF01554; putative integral membrane protein 878575..879894 Campylobacter fetus subsp. fetus 82-40 4538855 YP_892050.1 CDS ppk NC_008599.1 880007 882097 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 880007..882097 Campylobacter fetus subsp. fetus 82-40 4539112 YP_892051.1 CDS CFF8240_0876 NC_008599.1 882794 883066 D hypothetical protein 882794..883066 Campylobacter fetus subsp. fetus 82-40 4538399 YP_892052.1 CDS metE NC_008599.1 883145 885400 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 883145..885400 Campylobacter fetus subsp. fetus 82-40 4538098 YP_892053.1 CDS CFF8240_0878 NC_008599.1 885458 886351 D hypothetical protein 885458..886351 Campylobacter fetus subsp. fetus 82-40 4538572 YP_892054.1 CDS CFF8240_0881 NC_008599.1 888706 889185 R identified by match to protein family HMM PF00300; phosphohistidine phosphatase SixA complement(888706..889185) Campylobacter fetus subsp. fetus 82-40 4539231 YP_892055.1 CDS CFF8240_0882 NC_008599.1 889182 889985 R identified by match to protein family HMM PF04305; hypothetical protein complement(889182..889985) Campylobacter fetus subsp. fetus 82-40 4538909 YP_892056.1 CDS CFF8240_0883 NC_008599.1 889982 890500 R identified by match to protein family HMM PF01694; rhomboid family protein complement(889982..890500) Campylobacter fetus subsp. fetus 82-40 4539282 YP_892057.1 CDS CFF8240_0884 NC_008599.1 890695 891429 D identified by match to protein family HMM PF02754; hypothetical protein 890695..891429 Campylobacter fetus subsp. fetus 82-40 4538070 YP_892058.1 CDS CFF8240_0885 NC_008599.1 891426 892850 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273; iron-sulfur cluster binding protein 891426..892850 Campylobacter fetus subsp. fetus 82-40 4538846 YP_892059.1 CDS CFF8240_0886 NC_008599.1 892843 893484 D identified by match to protein family HMM PF02589; hypothetical protein 892843..893484 Campylobacter fetus subsp. fetus 82-40 4539125 YP_892060.1 CDS CFF8240_0887 NC_008599.1 893573 894202 R hypothetical protein complement(893573..894202) Campylobacter fetus subsp. fetus 82-40 4538027 YP_892061.1 CDS murA NC_008599.1 894308 895567 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 894308..895567 Campylobacter fetus subsp. fetus 82-40 4538336 YP_892062.1 CDS CFF8240_0889 NC_008599.1 895579 896757 D identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM TIGR00177; molybdopterin biosynthesis enzyme 895579..896757 Campylobacter fetus subsp. fetus 82-40 4538168 YP_892063.1 CDS flgA NC_008599.1 896761 897537 D required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 896761..897537 Campylobacter fetus subsp. fetus 82-40 4538536 YP_892064.1 CDS coaD NC_008599.1 897541 898020 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 897541..898020 Campylobacter fetus subsp. fetus 82-40 4539222 YP_892065.1 CDS tmk NC_008599.1 898014 898592 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 898014..898592 Campylobacter fetus subsp. fetus 82-40 4537871 YP_892066.1 CDS hisS NC_008599.1 898589 899818 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 898589..899818 Campylobacter fetus subsp. fetus 82-40 4539067 YP_892067.1 CDS speA NC_008599.1 899815 901656 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 899815..901656 Campylobacter fetus subsp. fetus 82-40 4538020 YP_892068.1 CDS cysE NC_008599.1 901660 902355 D identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine O-acetyltransferase 901660..902355 Campylobacter fetus subsp. fetus 82-40 4538225 YP_892069.1 CDS CFF8240_0897 NC_008599.1 902361 903530 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 902361..903530 Campylobacter fetus subsp. fetus 82-40 4538090 YP_892070.1 CDS CFF8240_0898 NC_008599.1 903530 904531 D identified by match to protein family HMM PF00535; sugar transferase 903530..904531 Campylobacter fetus subsp. fetus 82-40 4538436 YP_892071.1 CDS CFF8240_0899 NC_008599.1 904646 906436 D identified by match to protein family HMM PF05787; twin-arginine translocation pathway signal 904646..906436 Campylobacter fetus subsp. fetus 82-40 4537760 YP_892072.1 CDS CFF8240_0900 NC_008599.1 906500 906985 R identified by match to protein family HMM PF00258; flavodoxin complement(906500..906985) Campylobacter fetus subsp. fetus 82-40 4538185 YP_892073.1 CDS CFF8240_0901 NC_008599.1 907135 907260 R hypothetical protein complement(907135..907260) Campylobacter fetus subsp. fetus 82-40 4537956 YP_892074.1 CDS CFF8240_0902 NC_008599.1 907435 908412 D identified by match to protein family HMM PF03401; tricarboxylic transport 907435..908412 Campylobacter fetus subsp. fetus 82-40 4537865 YP_892075.1 CDS CFF8240_0903 NC_008599.1 908409 908852 D putative tricarboxylic transport membrane protein 908409..908852 Campylobacter fetus subsp. fetus 82-40 4538239 YP_892076.1 CDS oorC NC_008599.1 909804 910355 R identified by match to protein family HMM PF01558; 2-oxoglutarate-acceptor oxidoreductase subunit OorC complement(909804..910355) Campylobacter fetus subsp. fetus 82-40 4539203 YP_892077.1 CDS oorB NC_008599.1 910352 911197 R identified by match to protein family HMM PF02775; 2-oxoglutarate-acceptor oxidoreductase subunit OorB complement(910352..911197) Campylobacter fetus subsp. fetus 82-40 4538335 YP_892078.1 CDS oorA NC_008599.1 911199 912320 R identified by match to protein family HMM PF01855; 2-oxoglutarate-acceptor oxidoreductase subunit OorA complement(911199..912320) Campylobacter fetus subsp. fetus 82-40 4537996 YP_892079.1 CDS oorD NC_008599.1 912332 912637 R identified by match to protein family HMM PF00037; 2-oxoglutarate-acceptor oxidoreductase subunit OorD complement(912332..912637) Campylobacter fetus subsp. fetus 82-40 4539317 YP_892080.1 CDS sucD NC_008599.1 912650 913522 R identified by match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthetase, alpha subunit complement(912650..913522) Campylobacter fetus subsp. fetus 82-40 4538741 YP_892081.1 CDS sucC NC_008599.1 913532 914689 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(913532..914689) Campylobacter fetus subsp. fetus 82-40 4538383 YP_892082.1 CDS CFF8240_0912 NC_008599.1 914784 915704 R identified by match to protein family HMM PF00056; match to protein family HMM PF00070; match to protein family HMM PF02866; malate dehydrogenase complement(914784..915704) Campylobacter fetus subsp. fetus 82-40 4538553 YP_892083.1 CDS CFF8240_0913 NC_008599.1 915706 917898 R identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178; isocitrate dehydrogenase complement(915706..917898) Campylobacter fetus subsp. fetus 82-40 4539012 YP_892084.1 CDS CFF8240_0914 NC_008599.1 918085 919158 R identified by match to protein family HMM PF03595; C4-dicarboxylate transporter/malic acid transport protein complement(918085..919158) Campylobacter fetus subsp. fetus 82-40 4539292 YP_892085.1 CDS CFF8240_0915 NC_008599.1 919197 919814 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD-superfamily hydrolase complement(919197..919814) Campylobacter fetus subsp. fetus 82-40 4537878 YP_892086.1 CDS CFF8240_0916 NC_008599.1 919807 920130 R hypothetical protein complement(919807..920130) Campylobacter fetus subsp. fetus 82-40 4539211 YP_892087.1 CDS CFF8240_0917 NC_008599.1 920301 921731 R identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780; succinate-semialdehyde dehydrogenase(NADP+) complement(920301..921731) Campylobacter fetus subsp. fetus 82-40 4539048 YP_892088.1 CDS hcp NC_008599.1 921851 923185 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(921851..923185) Campylobacter fetus subsp. fetus 82-40 4539512 YP_892089.1 CDS CFF8240_0919 NC_008599.1 923442 924713 D identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326; O-acetylhomoserine sulfhydrylase 923442..924713 Campylobacter fetus subsp. fetus 82-40 4539182 YP_892090.1 CDS CFF8240_0920 NC_008599.1 924746 925123 D identified by match to protein family HMM PF02082; BadM/Rrf2 family transcriptional regulator 924746..925123 Campylobacter fetus subsp. fetus 82-40 4538682 YP_892091.1 CDS cysK NC_008599.1 925134 926048 D identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 925134..926048 Campylobacter fetus subsp. fetus 82-40 4538334 YP_892092.1 CDS acpS NC_008599.1 926045 926392 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(926045..926392) Campylobacter fetus subsp. fetus 82-40 4538620 YP_892093.1 CDS fliL NC_008599.1 926389 926916 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(926389..926916) Campylobacter fetus subsp. fetus 82-40 4539286 YP_892094.1 CDS CFF8240_0924 NC_008599.1 926992 927858 R identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase family protein complement(926992..927858) Campylobacter fetus subsp. fetus 82-40 4538651 YP_892095.1 CDS CFF8240_0925 NC_008599.1 927859 929022 R catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase complement(927859..929022) Campylobacter fetus subsp. fetus 82-40 4539450 YP_892096.1 CDS CFF8240_0926 NC_008599.1 929025 929648 R identified by match to protein family HMM PF03458; hypothetical protein complement(929025..929648) Campylobacter fetus subsp. fetus 82-40 4539471 YP_892097.1 CDS CFF8240_0927 NC_008599.1 929747 930742 R identified by match to protein family HMM PF02618; hypothetical protein complement(929747..930742) Campylobacter fetus subsp. fetus 82-40 4538408 YP_892098.1 CDS CFF8240_0928 NC_008599.1 931203 933170 D hypothetical protein 931203..933170 Campylobacter fetus subsp. fetus 82-40 4538340 YP_892099.1 CDS CFF8240_0929 NC_008599.1 933176 933517 R identified by match to protein family HMM PF01155; hydrogenase expression/synthesis, HypA complement(933176..933517) Campylobacter fetus subsp. fetus 82-40 4538431 YP_892100.1 CDS hypE NC_008599.1 933531 934541 R identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE complement(933531..934541) Campylobacter fetus subsp. fetus 82-40 4539456 YP_892101.1 CDS hypD NC_008599.1 934525 935613 R identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD complement(934525..935613) Campylobacter fetus subsp. fetus 82-40 4538616 YP_892102.1 CDS hypC NC_008599.1 935613 935891 R identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC/HupF complement(935613..935891) Campylobacter fetus subsp. fetus 82-40 4539547 YP_892103.1 CDS hypB NC_008599.1 935891 936679 R identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB complement(935891..936679) Campylobacter fetus subsp. fetus 82-40 4538110 YP_892104.1 CDS CFF8240_0934 NC_008599.1 936703 937125 R Inhibits transcription at high concentrations of nickel; nickel responsive regulator complement(936703..937125) Campylobacter fetus subsp. fetus 82-40 4539359 YP_892105.1 CDS hypF NC_008599.1 937139 939364 R identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF complement(937139..939364) Campylobacter fetus subsp. fetus 82-40 4539077 YP_892106.1 CDS CFF8240_0936 NC_008599.1 939351 940790 R hypothetical protein complement(939351..940790) Campylobacter fetus subsp. fetus 82-40 4539179 YP_892107.1 CDS CFF8240_0937 NC_008599.1 940787 941326 R identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; hydrogenase maturation protease HydD complement(940787..941326) Campylobacter fetus subsp. fetus 82-40 4538916 YP_892108.1 CDS cybH NC_008599.1 941331 942008 R identified by match to protein family HMM PF01292; match to protein family HMM TIGR02125; Ni/Fe-hydrogenase, B-type cytochrome subunit complement(941331..942008) Campylobacter fetus subsp. fetus 82-40 4539558 YP_892109.1 CDS CFF8240_0939 NC_008599.1 942019 943740 R identified by match to protein family HMM PF00374; quinone-reactive Ni/Fe-hydrogenase large chain complement(942019..943740) Campylobacter fetus subsp. fetus 82-40 4539223 YP_892110.1 CDS CFF8240_0940 NC_008599.1 943744 944895 R identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; quinone-reactive Ni/Fe-hydrogenase small chain complement(943744..944895) Campylobacter fetus subsp. fetus 82-40 4538308 YP_892111.1 CDS CFF8240_0941 NC_008599.1 945073 945384 R identified by match to protein family HMM PF05437; branched-chain amino acid transport protein AzlD complement(945073..945384) Campylobacter fetus subsp. fetus 82-40 4538959 YP_892112.1 CDS CFF8240_0942 NC_008599.1 945384 946046 R identified by match to protein family HMM PF03591; branched-chain amino acid transport protein complement(945384..946046) Campylobacter fetus subsp. fetus 82-40 4538990 YP_892113.1 CDS CFF8240_0943 NC_008599.1 946203 948776 R identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; chaperone ClpB complement(946203..948776) Campylobacter fetus subsp. fetus 82-40 4538424 YP_892114.1 CDS CFF8240_0944 NC_008599.1 948927 950240 D identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 948927..950240 Campylobacter fetus subsp. fetus 82-40 4538389 YP_892115.1 CDS purC NC_008599.1 950251 950964 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 950251..950964 Campylobacter fetus subsp. fetus 82-40 4538748 YP_892116.1 CDS purS NC_008599.1 951093 951323 D identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase, PurS protein 951093..951323 Campylobacter fetus subsp. fetus 82-40 4538089 YP_892117.1 CDS purQ NC_008599.1 951326 951991 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 951326..951991 Campylobacter fetus subsp. fetus 82-40 4539486 YP_892118.1 CDS CFF8240_0948 NC_008599.1 952060 953235 D hypothetical protein 952060..953235 Campylobacter fetus subsp. fetus 82-40 4539372 YP_892119.1 CDS CFF8240_0949 NC_008599.1 953219 953896 D identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 953219..953896 Campylobacter fetus subsp. fetus 82-40 4539295 YP_892120.1 CDS crcB NC_008599.1 953893 954279 D identified by match to protein family HMM PF02537; match to protein family HMM TIGR00494; CrcB protein 953893..954279 Campylobacter fetus subsp. fetus 82-40 4538941 YP_892121.1 CDS CFF8240_0951 NC_008599.1 954306 954857 R identified by match to protein family HMM PF03498; cytolethal distending toxin A/C family protein complement(954306..954857) Campylobacter fetus subsp. fetus 82-40 4537978 YP_892122.1 CDS CFF8240_0954 NC_008599.1 955672 956289 R identified by match to protein family HMM PF03498; cytolethal distending toxin A complement(955672..956289) Campylobacter fetus subsp. fetus 82-40 4539059 YP_892123.1 CDS CFF8240_0955 NC_008599.1 956576 957127 R identified by match to protein family HMM PF03498; cytolethal distending toxin A/C family protein complement(956576..957127) Campylobacter fetus subsp. fetus 82-40 4539142 YP_892124.1 CDS CFF8240_0956 NC_008599.1 957137 957931 R identified by match to protein family HMM PF03372; cytolethal distending toxin complement(957137..957931) Campylobacter fetus subsp. fetus 82-40 4539141 YP_892125.1 CDS CFF8240_0957 NC_008599.1 957940 958641 R identified by match to protein family HMM PF03498; cytolethal distending toxin A complement(957940..958641) Campylobacter fetus subsp. fetus 82-40 4538604 YP_892126.1 CDS CFF8240_0958 NC_008599.1 958864 960717 D molecular chaperone; heat shock protein 90 958864..960717 Campylobacter fetus subsp. fetus 82-40 4538626 YP_892127.1 CDS CFF8240_0959 NC_008599.1 960757 961146 R identified by match to protein family HMM PF00581; thiosulfate sulfurtransferase complement(960757..961146) Campylobacter fetus subsp. fetus 82-40 4539188 YP_892128.1 CDS CFF8240_0960 NC_008599.1 961493 962278 D methyltransferase 961493..962278 Campylobacter fetus subsp. fetus 82-40 4539503 YP_892129.1 CDS CFF8240_0961 NC_008599.1 962348 964387 R identified by match to protein family HMM PF00580; UvrD/REP helicase complement(962348..964387) Campylobacter fetus subsp. fetus 82-40 4538427 YP_892130.1 CDS CFF8240_0962 NC_008599.1 964444 964557 R hypothetical protein complement(964444..964557) Campylobacter fetus subsp. fetus 82-40 4538733 YP_892131.1 CDS CFF8240_0963 NC_008599.1 964536 964721 D hypothetical protein 964536..964721 Campylobacter fetus subsp. fetus 82-40 4539385 YP_892132.1 CDS CFF8240_0964 NC_008599.1 964978 965877 D hypothetical protein 964978..965877 Campylobacter fetus subsp. fetus 82-40 4538444 YP_892133.1 CDS fumC NC_008599.1 965944 967341 R identified by match to protein family HMM PF00206; match to protein family HMM TIGR00979; class II fumarate hydratase complement(965944..967341) Campylobacter fetus subsp. fetus 82-40 4538084 YP_892134.1 CDS valS NC_008599.1 967516 970137 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 967516..970137 Campylobacter fetus subsp. fetus 82-40 4539473 YP_892135.1 CDS CFF8240_0967 NC_008599.1 970134 971102 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 970134..971102 Campylobacter fetus subsp. fetus 82-40 4537779 YP_892136.1 CDS CFF8240_0968 NC_008599.1 971099 971740 D identified by match to protein family HMM PF00528; D-methionine transport system permease protein MetI 971099..971740 Campylobacter fetus subsp. fetus 82-40 4538657 YP_892137.1 CDS thiD NC_008599.1 971799 972590 R identified by match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase complement(971799..972590) Campylobacter fetus subsp. fetus 82-40 4538938 YP_892138.1 CDS CFF8240_0970 NC_008599.1 972878 973651 D identified by match to protein family HMM PF03180; NLPA family lipoprotein 972878..973651 Campylobacter fetus subsp. fetus 82-40 4537759 YP_892139.1 CDS rpmB NC_008599.1 973748 973939 D required for 70S ribosome assembly; 50S ribosomal protein L28 973748..973939 Campylobacter fetus subsp. fetus 82-40 4538762 YP_892140.1 CDS CFF8240_0972 NC_008599.1 973959 975089 D identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885; hypothetical protein 973959..975089 Campylobacter fetus subsp. fetus 82-40 4537836 YP_892141.1 CDS argJ NC_008599.1 975082 976269 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 975082..976269 Campylobacter fetus subsp. fetus 82-40 4538356 YP_892142.1 CDS CFF8240_0974 NC_008599.1 976331 976558 D identified by match to protein family HMM PF04325; hypothetical protein 976331..976558 Campylobacter fetus subsp. fetus 82-40 4538944 YP_892143.1 CDS CFF8240_0975 NC_008599.1 976756 977853 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 976756..977853 Campylobacter fetus subsp. fetus 82-40 4538559 YP_892144.1 CDS trmA NC_008599.1 977879 978982 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(977879..978982) Campylobacter fetus subsp. fetus 82-40 4538218 YP_892145.1 CDS CFF8240_0977 NC_008599.1 978985 979731 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg complement(978985..979731) Campylobacter fetus subsp. fetus 82-40 4539213 YP_892146.1 CDS CFF8240_0978 NC_008599.1 979728 980837 R identified by match to protein family HMM PF00023; ankyrin repeat-containing protein complement(979728..980837) Campylobacter fetus subsp. fetus 82-40 4538454 YP_892147.1 CDS CFF8240_0979 NC_008599.1 980840 982267 R identified by match to protein family HMM PF02080; TrkA domain-containing protein complement(980840..982267) Campylobacter fetus subsp. fetus 82-40 4538314 YP_892148.1 CDS tgt NC_008599.1 982305 983429 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 982305..983429 Campylobacter fetus subsp. fetus 82-40 4537752 YP_892149.1 CDS CFF8240_0981 NC_008599.1 983426 984157 D hypothetical protein 983426..984157 Campylobacter fetus subsp. fetus 82-40 4539505 YP_892150.1 CDS dnaB NC_008599.1 984217 985617 R unwinds double stranded DNA; replicative DNA helicase complement(984217..985617) Campylobacter fetus subsp. fetus 82-40 4538923 YP_892151.1 CDS ispG NC_008599.1 985610 986680 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(985610..986680) Campylobacter fetus subsp. fetus 82-40 4539389 YP_892152.1 CDS CFF8240_0984 NC_008599.1 986812 987477 R identified by match to protein family HMM PF01863; zinc metalloprotease complement(986812..987477) Campylobacter fetus subsp. fetus 82-40 4538683 YP_892153.1 CDS CFF8240_0985 NC_008599.1 987470 990541 R identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I site-specific deoxyribonuclease HsdR complement(987470..990541) Campylobacter fetus subsp. fetus 82-40 4538714 YP_892154.1 CDS CFF8240_0986 NC_008599.1 990538 991461 R hypothetical protein complement(990538..991461) Campylobacter fetus subsp. fetus 82-40 4539116 YP_892155.1 CDS CFF8240_0987 NC_008599.1 991461 991985 R hypothetical protein complement(991461..991985) Campylobacter fetus subsp. fetus 82-40 4537976 YP_892156.1 CDS CFF8240_0988 NC_008599.1 992013 993218 R identified by match to protein family HMM PF01420; type I restriction-modification system subunit S complement(992013..993218) Campylobacter fetus subsp. fetus 82-40 4538593 YP_892157.1 CDS CFF8240_0989 NC_008599.1 993208 993423 R hypothetical protein complement(993208..993423) Campylobacter fetus subsp. fetus 82-40 4539083 YP_892158.1 CDS hsdM NC_008599.1 993446 994951 R identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit complement(993446..994951) Campylobacter fetus subsp. fetus 82-40 4538136 YP_892159.1 CDS CFF8240_0991 NC_008599.1 994957 995544 R identified by match to protein family HMM PF01420; restriction modification system DNA specificity subunit complement(994957..995544) Campylobacter fetus subsp. fetus 82-40 4538159 YP_892160.1 CDS CFF8240_0992 NC_008599.1 995635 999192 D hypothetical protein 995635..999192 Campylobacter fetus subsp. fetus 82-40 4539181 YP_892161.1 CDS CFF8240_0993 NC_008599.1 999262 999636 R hypothetical protein complement(999262..999636) Campylobacter fetus subsp. fetus 82-40 4538861 YP_892162.1 CDS CFF8240_0994 NC_008599.1 999605 999733 D hypothetical protein 999605..999733 Campylobacter fetus subsp. fetus 82-40 4538862 YP_892163.1 CDS acnB NC_008599.1 1001644 1004202 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(1001644..1004202) Campylobacter fetus subsp. fetus 82-40 4537763 YP_892164.1 CDS CFF8240_0998 NC_008599.1 1004351 1004809 D identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine methyltransferase 1004351..1004809 Campylobacter fetus subsp. fetus 82-40 4538891 YP_892165.1 CDS CFF8240_0999 NC_008599.1 1004876 1005892 R bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein complement(1004876..1005892) Campylobacter fetus subsp. fetus 82-40 4539356 YP_892166.1 CDS rplI NC_008599.1 1006067 1006510 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1006067..1006510 Campylobacter fetus subsp. fetus 82-40 4537800 YP_892167.1 CDS CFF8240_1001 NC_008599.1 1006510 1007052 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1006510..1007052 Campylobacter fetus subsp. fetus 82-40 4538724 YP_892168.1 CDS hslU NC_008599.1 1007049 1008371 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1007049..1008371 Campylobacter fetus subsp. fetus 82-40 4538578 YP_892169.1 CDS era NC_008599.1 1008368 1009237 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1008368..1009237 Campylobacter fetus subsp. fetus 82-40 4538295 YP_892170.1 CDS CFF8240_1004 NC_008599.1 1009305 1010792 D hypothetical protein 1009305..1010792 Campylobacter fetus subsp. fetus 82-40 4538302 YP_892171.1 CDS CFF8240_1005 NC_008599.1 1010792 1011421 D hypothetical protein 1010792..1011421 Campylobacter fetus subsp. fetus 82-40 4539343 YP_892172.1 CDS CFF8240_1006 NC_008599.1 1011418 1011816 D hypothetical protein 1011418..1011816 Campylobacter fetus subsp. fetus 82-40 4538597 YP_892173.1 CDS CFF8240_1007 NC_008599.1 1011794 1013332 D identified by match to protein family HMM PF00263; match to protein family HMM PF07655; match to protein family HMM TIGR02519; type II and III secretion system protein 1011794..1013332 Campylobacter fetus subsp. fetus 82-40 4538233 YP_892174.1 CDS CFF8240_1008 NC_008599.1 1013329 1014144 D hypothetical protein 1013329..1014144 Campylobacter fetus subsp. fetus 82-40 4539291 YP_892175.1 CDS CFF8240_1009 NC_008599.1 1014164 1015066 D hypothetical protein 1014164..1015066 Campylobacter fetus subsp. fetus 82-40 4538758 YP_892176.1 CDS CFF8240_1010 NC_008599.1 1015079 1016875 D identified by match to protein family HMM PF00437; match to protein family HMM PF05157; type II secretion system protein E 1015079..1016875 Campylobacter fetus subsp. fetus 82-40 4539437 YP_892177.1 CDS CFF8240_1011 NC_008599.1 1016872 1018113 D identified by match to protein family HMM PF00482; type II secretion system protein 1016872..1018113 Campylobacter fetus subsp. fetus 82-40 4538180 YP_892178.1 CDS CFF8240_1012 NC_008599.1 1018177 1018692 D identified by match to protein family HMM PF00989; match to protein family HMM TIGR00229; methyl-accepting chemotaxis protein 1018177..1018692 Campylobacter fetus subsp. fetus 82-40 4538663 YP_892179.1 CDS rsc NC_008599.1 1019903 1020349 R identified by match to protein family HMM PF02637; GatB/Yqey family protein complement(1019903..1020349) Campylobacter fetus subsp. fetus 82-40 4538837 YP_892180.1 CDS CFF8240_1016 NC_008599.1 1020352 1021230 R identified by match to protein family HMM PF02541; Ppx/GppA family phosphatase complement(1020352..1021230) Campylobacter fetus subsp. fetus 82-40 4538456 YP_892181.1 CDS CFF8240_1017 NC_008599.1 1021227 1022333 R identified by match to protein family HMM PF01743; polyA polymerase family protein complement(1021227..1022333) Campylobacter fetus subsp. fetus 82-40 4538048 YP_892182.1 CDS CFF8240_1018 NC_008599.1 1022293 1022640 R hypothetical protein complement(1022293..1022640) Campylobacter fetus subsp. fetus 82-40 4539249 YP_892183.1 CDS CFF8240_1019 NC_008599.1 1022637 1022888 R hypothetical protein complement(1022637..1022888) Campylobacter fetus subsp. fetus 82-40 4538275 YP_892184.1 CDS leuB NC_008599.1 1022885 1023955 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(1022885..1023955) Campylobacter fetus subsp. fetus 82-40 4538050 YP_892185.1 CDS leuD NC_008599.1 1023980 1024459 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase small subunit complement(1023980..1024459) Campylobacter fetus subsp. fetus 82-40 4537950 YP_892186.1 CDS CFF8240_1022 NC_008599.1 1024502 1025101 R identified by match to protein family HMM PF01810; homogentisate export protein complement(1024502..1025101) Campylobacter fetus subsp. fetus 82-40 4538875 YP_892187.1 CDS CFF8240_1023 NC_008599.1 1025110 1025724 R identified by match to protein family HMM PF01810; LysE family translocator protein complement(1025110..1025724) Campylobacter fetus subsp. fetus 82-40 4539352 YP_892188.1 CDS CFF8240_1024 NC_008599.1 1025834 1026310 D hypothetical protein 1025834..1026310 Campylobacter fetus subsp. fetus 82-40 4539397 YP_892189.1 CDS ansB NC_008599.1 1026347 1027390 R identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520; L-asparaginase II complement(1026347..1027390) Campylobacter fetus subsp. fetus 82-40 4538852 YP_892190.1 CDS CFF8240_1026 NC_008599.1 1027500 1028807 R identified by match to protein family HMM PF02646; RmuC family protein complement(1027500..1028807) Campylobacter fetus subsp. fetus 82-40 4539344 YP_892191.1 CDS CFF8240_1027 NC_008599.1 1028926 1029846 D identified by match to protein family HMM PF03547; putative permease 1028926..1029846 Campylobacter fetus subsp. fetus 82-40 4538528 YP_892192.1 CDS CFF8240_1028 NC_008599.1 1029878 1030186 R identified by match to protein family HMM PF03831; hypothetical protein complement(1029878..1030186) Campylobacter fetus subsp. fetus 82-40 4538811 YP_892193.1 CDS alaS NC_008599.1 1030305 1032842 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1030305..1032842 Campylobacter fetus subsp. fetus 82-40 4539434 YP_892194.1 CDS CFF8240_1030 NC_008599.1 1032839 1033333 D hypothetical protein 1032839..1033333 Campylobacter fetus subsp. fetus 82-40 4537795 YP_892195.1 CDS CFF8240_1031 NC_008599.1 1033330 1033878 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1033330..1033878 Campylobacter fetus subsp. fetus 82-40 4538708 YP_892196.1 CDS CFF8240_1032 NC_008599.1 1033875 1035812 D identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A 1033875..1035812 Campylobacter fetus subsp. fetus 82-40 4538322 YP_892197.1 CDS CFF8240_1033 NC_008599.1 1035814 1036152 R hypothetical protein complement(1035814..1036152) Campylobacter fetus subsp. fetus 82-40 4538905 YP_892198.1 CDS rplS NC_008599.1 1036260 1036616 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1036260..1036616) Campylobacter fetus subsp. fetus 82-40 4538771 YP_892199.1 CDS trmD NC_008599.1 1036613 1037311 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1036613..1037311) Campylobacter fetus subsp. fetus 82-40 4539506 YP_892200.1 CDS rimM NC_008599.1 1037315 1037845 R identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273; 16S rRNA processing protein RimM complement(1037315..1037845) Campylobacter fetus subsp. fetus 82-40 4538078 YP_892201.1 CDS CFF8240_1037 NC_008599.1 1037835 1038080 R hypothetical protein complement(1037835..1038080) Campylobacter fetus subsp. fetus 82-40 4537946 YP_892202.1 CDS rpsP NC_008599.1 1038086 1038313 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1038086..1038313) Campylobacter fetus subsp. fetus 82-40 4539363 YP_892203.1 CDS ffh NC_008599.1 1038384 1039730 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein complement(1038384..1039730) Campylobacter fetus subsp. fetus 82-40 4538270 YP_892204.1 CDS CFF8240_1040 NC_008599.1 1040049 1041452 D identified by match to protein family HMM PF00939; match to protein family HMM PF03600; nadc family protein 1040049..1041452 Campylobacter fetus subsp. fetus 82-40 4538001 YP_892205.1 CDS CFF8240_1041 NC_008599.1 1041532 1043727 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1041532..1043727 Campylobacter fetus subsp. fetus 82-40 4538274 YP_892206.1 CDS CFF8240_1042 NC_008599.1 1043785 1044549 R identified by match to protein family HMM PF00849; pseudouridine synthase complement(1043785..1044549) Campylobacter fetus subsp. fetus 82-40 4537991 YP_892207.1 CDS CFF8240_1043 NC_008599.1 1044559 1045734 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(1044559..1045734) Campylobacter fetus subsp. fetus 82-40 4539106 YP_892208.1 CDS CFF8240_1044 NC_008599.1 1045460 1045684 D hypothetical protein 1045460..1045684 Campylobacter fetus subsp. fetus 82-40 4539088 YP_892209.1 CDS CFF8240_1045 NC_008599.1 1045686 1046399 R identified by match to protein family HMM PF02591; hypothetical protein complement(1045686..1046399) Campylobacter fetus subsp. fetus 82-40 4538382 YP_892210.1 CDS CFF8240_1046 NC_008599.1 1046417 1047139 R identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein complement(1046417..1047139) Campylobacter fetus subsp. fetus 82-40 4539236 YP_892211.1 CDS glyQ NC_008599.1 1047136 1047993 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1047136..1047993) Campylobacter fetus subsp. fetus 82-40 4537835 YP_892212.1 CDS CFF8240_1048 NC_008599.1 1048040 1048510 R hypothetical protein complement(1048040..1048510) Campylobacter fetus subsp. fetus 82-40 4539499 YP_892213.1 CDS purE NC_008599.1 1048522 1049019 R identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(1048522..1049019) Campylobacter fetus subsp. fetus 82-40 4539180 YP_892214.1 CDS CFF8240_1050 NC_008599.1 1049160 1050416 R identified by match to protein family HMM PF01136; putative protease complement(1049160..1050416) Campylobacter fetus subsp. fetus 82-40 4538445 YP_892215.1 CDS CFF8240_1051 NC_008599.1 1050413 1051147 R hypothetical protein complement(1050413..1051147) Campylobacter fetus subsp. fetus 82-40 4539093 YP_892216.1 CDS CFF8240_1053 NC_008599.1 1052135 1052914 D identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol phosphate phosphatase HisJ 1052135..1052914 Campylobacter fetus subsp. fetus 82-40 4539540 YP_892217.1 CDS glnA NC_008599.1 1053003 1054430 D identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 1053003..1054430 Campylobacter fetus subsp. fetus 82-40 4538345 YP_892218.1 CDS CFF8240_1055 NC_008599.1 1054493 1054930 R hypothetical protein complement(1054493..1054930) Campylobacter fetus subsp. fetus 82-40 4538327 YP_892219.1 CDS CFF8240_1056 NC_008599.1 1055075 1055593 R identified by match to protein family HMM PF00023; ankyrin repeat-containing protein complement(1055075..1055593) Campylobacter fetus subsp. fetus 82-40 4538819 YP_892220.1 CDS CFF8240_1057 NC_008599.1 1055705 1057147 R identified by match to protein family HMM PF00199; catalase complement(1055705..1057147) Campylobacter fetus subsp. fetus 82-40 4538919 YP_892221.1 CDS lon NC_008599.1 1059657 1062053 R identified by match to protein family HMM PF00004; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La complement(1059657..1062053) Campylobacter fetus subsp. fetus 82-40 4538035 YP_892222.1 CDS CFF8240_1061 NC_008599.1 1062062 1062709 R hypothetical protein complement(1062062..1062709) Campylobacter fetus subsp. fetus 82-40 4538183 YP_892223.1 CDS CFF8240_1062 NC_008599.1 1062857 1063624 D identified by match to protein family HMM PF01614; IclR family transcriptional regulator 1062857..1063624 Campylobacter fetus subsp. fetus 82-40 4538137 YP_892224.1 CDS CFF8240_1063 NC_008599.1 1063851 1064738 D identified by match to protein family HMM PF00701; dihydrodipicolinate synthase 1063851..1064738 Campylobacter fetus subsp. fetus 82-40 4539062 YP_892225.1 CDS CFF8240_1064 NC_008599.1 1064735 1066252 D identified by match to protein family HMM PF04292; match to protein family HMM PF04295; altronate hydrolase 1064735..1066252 Campylobacter fetus subsp. fetus 82-40 4539160 YP_892226.1 CDS CFF8240_1065 NC_008599.1 1066273 1067049 D identified by match to protein family HMM PF00106; short chain dehydrogenase 1066273..1067049 Campylobacter fetus subsp. fetus 82-40 4539207 YP_892227.1 CDS fucP NC_008599.1 1067060 1068259 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00885; L-fucose:H+ symporter permease 1067060..1068259 Campylobacter fetus subsp. fetus 82-40 4539092 YP_892228.1 CDS CFF8240_1067 NC_008599.1 1068285 1069388 D identified by match to protein family HMM PF04909; match to protein family HMM PF05336; hypothetical protein 1068285..1069388 Campylobacter fetus subsp. fetus 82-40 4538046 YP_892229.1 CDS CFF8240_1068 NC_008599.1 1069498 1069884 D binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 1069498..1069884 Campylobacter fetus subsp. fetus 82-40 4539485 YP_892230.1 CDS CFF8240_1069 NC_008599.1 1069912 1070586 D identified by match to protein family HMM TIGR02532; prepilin-type N-terminal cleavage/methylation domain-containing protein 1069912..1070586 Campylobacter fetus subsp. fetus 82-40 4539417 YP_892231.1 CDS CFF8240_1070 NC_008599.1 1070586 1071512 D identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; prepilin-type N-terminal cleavage/methylation domain-containing protein 1070586..1071512 Campylobacter fetus subsp. fetus 82-40 4538207 YP_892232.1 CDS CFF8240_1071 NC_008599.1 1071512 1071991 D hypothetical protein 1071512..1071991 Campylobacter fetus subsp. fetus 82-40 4538395 YP_892233.1 CDS CFF8240_1072 NC_008599.1 1072035 1072565 D identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; sigma 54 modulation protein/ribosomal protein S30EA 1072035..1072565 Campylobacter fetus subsp. fetus 82-40 4538241 YP_892234.1 CDS CFF8240_1073 NC_008599.1 1072620 1073894 R identified by match to protein family HMM PF05343; match to protein family HMM PF07687; aminoacyl-histidine dipeptidase complement(1072620..1073894) Campylobacter fetus subsp. fetus 82-40 4539284 YP_892235.1 CDS CFF8240_1074 NC_008599.1 1073958 1074140 D hypothetical protein 1073958..1074140 Campylobacter fetus subsp. fetus 82-40 4538212 YP_892236.1 CDS CFF8240_1075 NC_008599.1 1074124 1074972 D identified by match to protein family HMM PF08003; hypothetical protein 1074124..1074972 Campylobacter fetus subsp. fetus 82-40 4538715 YP_892237.1 CDS CFF8240_1077 NC_008599.1 1074984 1075493 D hypothetical protein 1074984..1075493 Campylobacter fetus subsp. fetus 82-40 4539402 YP_892238.1 CDS CFF8240_1076 NC_008599.1 1075486 1076076 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(1075486..1076076) Campylobacter fetus subsp. fetus 82-40 4538868 YP_892239.1 CDS nadE NC_008599.1 1076167 1076913 D identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; NAD+ synthetase 1076167..1076913 Campylobacter fetus subsp. fetus 82-40 4538280 YP_892240.1 CDS CFF8240_1079 NC_008599.1 1076927 1078060 D identified by match to protein family HMM PF01041; match to protein family HMM PF01212; wbgx protein 1076927..1078060 Campylobacter fetus subsp. fetus 82-40 4539431 YP_892241.1 CDS lpxK NC_008599.1 1078053 1078997 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1078053..1078997 Campylobacter fetus subsp. fetus 82-40 4538613 YP_892242.1 CDS argB NC_008599.1 1079023 1079865 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 1079023..1079865 Campylobacter fetus subsp. fetus 82-40 4538037 YP_892243.1 CDS CFF8240_1082 NC_008599.1 1079862 1081604 D identified by match to protein family HMM PF00291; match to protein family HMM PF03091; match to protein family HMM TIGR00260; threonine synthase 1079862..1081604 Campylobacter fetus subsp. fetus 82-40 4538696 YP_892244.1 CDS kdsB NC_008599.1 1081601 1082323 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1081601..1082323 Campylobacter fetus subsp. fetus 82-40 4539470 YP_892245.1 CDS CFF8240_1084 NC_008599.1 1082376 1082726 D hypothetical protein 1082376..1082726 Campylobacter fetus subsp. fetus 82-40 4539549 YP_892246.1 CDS CFF8240_1085 NC_008599.1 1082891 1083850 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1082891..1083850 Campylobacter fetus subsp. fetus 82-40 4538248 YP_892247.1 CDS CFF8240_1086 NC_008599.1 1083885 1084850 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1083885..1084850 Campylobacter fetus subsp. fetus 82-40 4538601 YP_892248.1 CDS CFF8240_1087 NC_008599.1 1084886 1086634 R identified by match to protein family HMM PF00085; match to protein family HMM PF02683; thiol:disulfide interchange protein DsbD complement(1084886..1086634) Campylobacter fetus subsp. fetus 82-40 4538474 YP_892249.1 CDS CFF8240_1088 NC_008599.1 1086768 1087598 D identified by match to protein family HMM PF03976; PvdS 1086768..1087598 Campylobacter fetus subsp. fetus 82-40 4539418 YP_892250.1 CDS dnaK NC_008599.1 1087751 1089631 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1087751..1089631) Campylobacter fetus subsp. fetus 82-40 4537966 YP_892251.1 CDS grpE NC_008599.1 1089670 1090191 R identified by match to protein family HMM PF01025; co-chaperone GrpE complement(1089670..1090191) Campylobacter fetus subsp. fetus 82-40 4539527 YP_892252.1 CDS CFF8240_1091 NC_008599.1 1090188 1090976 R Acts as a negative regulator of the grpE-dnaK-dnaJ and groELS class I heat shock operons by preventing heat-shock induction; heat-inducible transcription repressor complement(1090188..1090976) Campylobacter fetus subsp. fetus 82-40 4539145 YP_892253.1 CDS CFF8240_1092 NC_008599.1 1091345 1091491 D hypothetical protein 1091345..1091491 Campylobacter fetus subsp. fetus 82-40 4539374 YP_892254.1 CDS CFF8240_1093 NC_008599.1 1091661 1091894 R hypothetical protein complement(1091661..1091894) Campylobacter fetus subsp. fetus 82-40 4538006 YP_892255.1 CDS CFF8240_1094 NC_008599.1 1091891 1092907 R hypothetical protein complement(1091891..1092907) Campylobacter fetus subsp. fetus 82-40 4539156 YP_892256.1 CDS flhA NC_008599.1 1092917 1095064 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(1092917..1095064) Campylobacter fetus subsp. fetus 82-40 4537771 YP_892257.1 CDS CFF8240_1096 NC_008599.1 1095091 1095495 R identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; BadM/Rrf2 family transcriptional regulator complement(1095091..1095495) Campylobacter fetus subsp. fetus 82-40 4539491 YP_892258.1 CDS rpsO NC_008599.1 1095667 1095939 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1095667..1095939 Campylobacter fetus subsp. fetus 82-40 4538018 YP_892259.1 CDS CFF8240_1098 NC_008599.1 1095966 1096883 D catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I 1095966..1096883 Campylobacter fetus subsp. fetus 82-40 4538109 YP_892260.1 CDS CFF8240_1099 NC_008599.1 1096849 1097436 D hypothetical protein 1096849..1097436 Campylobacter fetus subsp. fetus 82-40 4539030 YP_892261.1 CDS CFF8240_1100 NC_008599.1 1097484 1098119 R identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase complement(1097484..1098119) Campylobacter fetus subsp. fetus 82-40 4538328 YP_892262.1 CDS CFF8240_1101 NC_008599.1 1098103 1099104 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1098103..1099104) Campylobacter fetus subsp. fetus 82-40 4538814 YP_892263.1 CDS CFF8240_1102 NC_008599.1 1099106 1099885 R identified by match to protein family HMM PF00528; ABC transporter permease complement(1099106..1099885) Campylobacter fetus subsp. fetus 82-40 4537856 YP_892264.1 CDS CFF8240_1103 NC_008599.1 1099882 1100724 R identified by match to protein family HMM PF00528; ABC transporter permease complement(1099882..1100724) Campylobacter fetus subsp. fetus 82-40 4538264 YP_892265.1 CDS CFF8240_1104 NC_008599.1 1100721 1101524 R hypothetical protein complement(1100721..1101524) Campylobacter fetus subsp. fetus 82-40 4539151 YP_892266.1 CDS CFF8240_1108 NC_008599.1 1103178 1103471 R ABC transporter substrate-binding protein complement(1103178..1103471) Campylobacter fetus subsp. fetus 82-40 4539495 YP_892267.1 CDS CFF8240_1109 NC_008599.1 1103543 1104247 R identified by match to protein family HMM PF02390; match to protein family HMM TIGR00740; methyltransferase complement(1103543..1104247) Campylobacter fetus subsp. fetus 82-40 4538127 YP_892268.1 CDS ribF NC_008599.1 1104244 1105125 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(1104244..1105125) Campylobacter fetus subsp. fetus 82-40 4538163 YP_892269.1 CDS rrmJ NC_008599.1 1105094 1105795 R identified by match to protein family HMM PF01479; match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J complement(1105094..1105795) Campylobacter fetus subsp. fetus 82-40 4538297 YP_892270.1 CDS ligA NC_008599.1 1105792 1107729 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(1105792..1107729) Campylobacter fetus subsp. fetus 82-40 4539560 YP_892271.1 CDS CFF8240_1113 NC_008599.1 1107730 1108872 R identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase complement(1107730..1108872) Campylobacter fetus subsp. fetus 82-40 4538211 YP_892272.1 CDS CFF8240_1114 NC_008599.1 1108869 1109486 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(1108869..1109486) Campylobacter fetus subsp. fetus 82-40 4538019 YP_892273.1 CDS CFF8240_1115 NC_008599.1 1109495 1110037 R hypothetical protein complement(1109495..1110037) Campylobacter fetus subsp. fetus 82-40 4538736 YP_892274.1 CDS CFF8240_1116 NC_008599.1 1110037 1111251 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(1110037..1111251) Campylobacter fetus subsp. fetus 82-40 4539117 YP_892275.1 CDS CFF8240_1117 NC_008599.1 1111251 1111721 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(1111251..1111721) Campylobacter fetus subsp. fetus 82-40 4538765 YP_892276.1 CDS CFF8240_1118 NC_008599.1 1111836 1112876 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1111836..1112876 Campylobacter fetus subsp. fetus 82-40 4538801 YP_892277.1 CDS CFF8240_1119 NC_008599.1 1112932 1113387 D mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 1112932..1113387 Campylobacter fetus subsp. fetus 82-40 4538689 YP_892278.1 CDS tatC NC_008599.1 1113387 1114142 D identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; twin arginine-targeting protein translocase TatC 1113387..1114142 Campylobacter fetus subsp. fetus 82-40 4538809 YP_892279.1 CDS queA NC_008599.1 1114139 1115158 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1114139..1115158 Campylobacter fetus subsp. fetus 82-40 4538402 YP_892280.1 CDS CFF8240_1123 NC_008599.1 1115168 1116412 D hypothetical protein 1115168..1116412 Campylobacter fetus subsp. fetus 82-40 4539410 YP_892281.1 CDS CFF8240_1122 NC_008599.1 1116398 1117261 R identified by match to protein family HMM PF01189; NOL1\NOP2\sun family protein complement(1116398..1117261) Campylobacter fetus subsp. fetus 82-40 4538043 YP_892282.1 CDS CFF8240_1124 NC_008599.1 1117269 1117643 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1117269..1117643) Campylobacter fetus subsp. fetus 82-40 4538439 YP_892283.1 CDS CFF8240_1125 NC_008599.1 1117640 1118407 R identified by match to protein family HMM PF02481; SMF family protein complement(1117640..1118407) Campylobacter fetus subsp. fetus 82-40 4537926 YP_892284.1 CDS CFF8240_1126 NC_008599.1 1118391 1119554 R identified by match to protein family HMM PF04748; hypothetical protein complement(1118391..1119554) Campylobacter fetus subsp. fetus 82-40 4539135 YP_892285.1 CDS ilvC NC_008599.1 1119555 1120577 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(1119555..1120577) Campylobacter fetus subsp. fetus 82-40 4538265 YP_892286.1 CDS CFF8240_1128 NC_008599.1 1120724 1121536 D putative signal transduction protein 1120724..1121536 Campylobacter fetus subsp. fetus 82-40 4537882 YP_892287.1 CDS CFF8240_1129 NC_008599.1 1121533 1123461 D identified by match to protein family HMM PF00773; match to protein family HMM PF08206; ribonuclease R 1121533..1123461 Campylobacter fetus subsp. fetus 82-40 4539427 YP_892288.1 CDS CFF8240_1130 NC_008599.1 1123454 1124467 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1123454..1124467 Campylobacter fetus subsp. fetus 82-40 4538504 YP_892289.1 CDS rpsF NC_008599.1 1124540 1124926 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1124540..1124926 Campylobacter fetus subsp. fetus 82-40 4538004 YP_892290.1 CDS CFF8240_1132 NC_008599.1 1124948 1125577 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1124948..1125577 Campylobacter fetus subsp. fetus 82-40 4538831 YP_892291.1 CDS rpsR NC_008599.1 1125590 1125850 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1125590..1125850 Campylobacter fetus subsp. fetus 82-40 4538158 YP_892292.1 CDS dnaJ NC_008599.1 1125882 1126970 R identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349; chaperone protein DnaJ complement(1125882..1126970) Campylobacter fetus subsp. fetus 82-40 4538315 YP_892293.1 CDS CFF8240_1135 NC_008599.1 1127165 1127836 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulatory protein BaeR 1127165..1127836 Campylobacter fetus subsp. fetus 82-40 4539346 YP_892294.1 CDS CFF8240_1136 NC_008599.1 1127833 1129092 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; two-component sensor 1127833..1129092 Campylobacter fetus subsp. fetus 82-40 4538554 YP_892295.1 CDS recR NC_008599.1 1129073 1129642 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1129073..1129642 Campylobacter fetus subsp. fetus 82-40 4538283 YP_892296.1 CDS aroE NC_008599.1 1129658 1130443 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(1129658..1130443) Campylobacter fetus subsp. fetus 82-40 4538434 YP_892297.1 CDS CFF8240_1139 NC_008599.1 1130443 1131210 R identified by match to protein family HMM PF05036; hypothetical protein complement(1130443..1131210) Campylobacter fetus subsp. fetus 82-40 4537913 YP_892298.1 CDS CFF8240_1140 NC_008599.1 1131221 1131763 R hypothetical protein complement(1131221..1131763) Campylobacter fetus subsp. fetus 82-40 4538692 YP_892299.1 CDS glyA NC_008599.1 1131763 1133007 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(1131763..1133007) Campylobacter fetus subsp. fetus 82-40 4538194 YP_892300.1 CDS lysS NC_008599.1 1133004 1134518 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(1133004..1134518) Campylobacter fetus subsp. fetus 82-40 4539481 YP_892301.1 CDS CFF8240_1143 NC_008599.1 1134529 1134993 R identified by match to protein family HMM PF01475; ferric uptake regulation protein complement(1134529..1134993) Campylobacter fetus subsp. fetus 82-40 4538012 YP_892302.1 CDS cvpA NC_008599.1 1134997 1135572 R identified by match to protein family HMM PF02674; CvpA family protein complement(1134997..1135572) Campylobacter fetus subsp. fetus 82-40 4539102 YP_892303.1 CDS pilT NC_008599.1 1135572 1136633 R identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilT complement(1135572..1136633) Campylobacter fetus subsp. fetus 82-40 4538245 YP_892304.1 CDS gatC NC_008599.1 1136637 1136924 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(1136637..1136924) Campylobacter fetus subsp. fetus 82-40 4539192 YP_892305.1 CDS CFF8240_1147 NC_008599.1 1137146 1137706 D hypothetical protein 1137146..1137706 Campylobacter fetus subsp. fetus 82-40 4538933 YP_892306.1 CDS CFF8240_1148 NC_008599.1 1137709 1138716 D hypothetical protein 1137709..1138716 Campylobacter fetus subsp. fetus 82-40 4538028 YP_892307.1 CDS CFF8240_1149 NC_008599.1 1138723 1139049 D hypothetical protein 1138723..1139049 Campylobacter fetus subsp. fetus 82-40 4538344 YP_892308.1 CDS CFF8240_1150 NC_008599.1 1139036 1139668 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 1139036..1139668 Campylobacter fetus subsp. fetus 82-40 4537930 YP_892309.1 CDS hisG NC_008599.1 1139656 1140267 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 1139656..1140267 Campylobacter fetus subsp. fetus 82-40 4539447 YP_892310.1 CDS brnQ NC_008599.1 1140276 1141580 D identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 1140276..1141580 Campylobacter fetus subsp. fetus 82-40 4539174 YP_892311.1 CDS CFF8240_1153 NC_008599.1 1141577 1142686 D identified by match to protein family HMM PF00149; cytoplasmic membrane protein 1141577..1142686 Campylobacter fetus subsp. fetus 82-40 4538457 YP_892312.1 CDS psd NC_008599.1 1142683 1143474 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 1142683..1143474 Campylobacter fetus subsp. fetus 82-40 4537854 YP_892313.1 CDS CFF8240_1155 NC_008599.1 1143513 1143848 R NapD protein complement(1143513..1143848) Campylobacter fetus subsp. fetus 82-40 4538978 YP_892314.1 CDS CFF8240_1156 NC_008599.1 1143845 1144744 R hypothetical protein complement(1143845..1144744) Campylobacter fetus subsp. fetus 82-40 4538372 YP_892315.1 CDS CFF8240_1157 NC_008599.1 1144741 1145211 R identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin complement(1144741..1145211) Campylobacter fetus subsp. fetus 82-40 4539287 YP_892316.1 CDS napB NC_008599.1 1145214 1145747 R identified by match to protein family HMM PF03892; periplasmic nitrate reductase, diheme cytochrome c subunit complement(1145214..1145747) Campylobacter fetus subsp. fetus 82-40 4538494 YP_892317.1 CDS napH NC_008599.1 1145744 1146529 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component complement(1145744..1146529) Campylobacter fetus subsp. fetus 82-40 4539259 YP_892318.1 CDS napG NC_008599.1 1146526 1147278 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(1146526..1147278) Campylobacter fetus subsp. fetus 82-40 4538521 YP_892319.1 CDS napA NC_008599.1 1147281 1150058 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(1147281..1150058) Campylobacter fetus subsp. fetus 82-40 4539058 YP_892320.1 CDS CFF8240_1162 NC_008599.1 1150458 1151120 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease complement(1150458..1151120) Campylobacter fetus subsp. fetus 82-40 4537971 YP_892321.1 CDS CFF8240_1163 NC_008599.1 1151123 1151812 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; amino acid ABC transporter permease complement(1151123..1151812) Campylobacter fetus subsp. fetus 82-40 4538045 YP_892322.1 CDS CFF8240_1164 NC_008599.1 1151812 1152606 R PEB1; bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein complement(1151812..1152606) Campylobacter fetus subsp. fetus 82-40 4538589 YP_892323.1 CDS CFF8240_1165 NC_008599.1 1152622 1153350 R identified by match to protein family HMM PF00005; glutamine transport ATP-binding protein GlnQ complement(1152622..1153350) Campylobacter fetus subsp. fetus 82-40 4538005 YP_892324.1 CDS ychF NC_008599.1 1153562 1154665 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(1153562..1154665) Campylobacter fetus subsp. fetus 82-40 4538674 YP_892325.1 CDS CFF8240_1167 NC_008599.1 1154665 1156137 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1154665..1156137) Campylobacter fetus subsp. fetus 82-40 4538549 YP_892326.1 CDS CFF8240_1168 NC_008599.1 1156118 1156729 R DedA family protein complement(1156118..1156729) Campylobacter fetus subsp. fetus 82-40 4538279 YP_892327.1 CDS apt NC_008599.1 1156732 1157280 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1156732..1157280) Campylobacter fetus subsp. fetus 82-40 4539521 YP_892328.1 CDS CFF8240_1170 NC_008599.1 1157294 1157626 R hypothetical protein complement(1157294..1157626) Campylobacter fetus subsp. fetus 82-40 4538644 YP_892329.1 CDS rpiB NC_008599.1 1157620 1158066 R identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120; ribose 5-phosphate isomerase B complement(1157620..1158066) Campylobacter fetus subsp. fetus 82-40 4538964 YP_892330.1 CDS CFF8240_1172 NC_008599.1 1158121 1158765 R identified by match to protein family HMM PF02163; peptidase M50 complement(1158121..1158765) Campylobacter fetus subsp. fetus 82-40 4538556 YP_892331.1 CDS lepB NC_008599.1 1158758 1159615 R identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I complement(1158758..1159615) Campylobacter fetus subsp. fetus 82-40 4538799 YP_892332.1 CDS CFF8240_1174 NC_008599.1 1159612 1160463 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1159612..1160463) Campylobacter fetus subsp. fetus 82-40 4538786 YP_892333.1 CDS CFF8240_1175 NC_008599.1 1160542 1160898 D hypothetical protein 1160542..1160898 Campylobacter fetus subsp. fetus 82-40 4539258 YP_892334.1 CDS hemL NC_008599.1 1160895 1162166 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1160895..1162166 Campylobacter fetus subsp. fetus 82-40 4538610 YP_892335.1 CDS CFF8240_1177 NC_008599.1 1162163 1162450 D hypothetical protein 1162163..1162450 Campylobacter fetus subsp. fetus 82-40 4538991 YP_892336.1 CDS CFF8240_1178 NC_008599.1 1162440 1162895 D hypothetical protein 1162440..1162895 Campylobacter fetus subsp. fetus 82-40 4537876 YP_892337.1 CDS CFF8240_1179 NC_008599.1 1162885 1164108 D identified by match to protein family HMM PF07690; transmembrane transport protein 1162885..1164108 Campylobacter fetus subsp. fetus 82-40 4539199 YP_892338.1 CDS CFF8240_1180 NC_008599.1 1164089 1165936 D hypothetical protein 1164089..1165936 Campylobacter fetus subsp. fetus 82-40 4538972 YP_892339.1 CDS CFF8240_1181 NC_008599.1 1165938 1166201 D identified by match to protein family HMM TIGR00789; FlhB domain-containing protein 1165938..1166201 Campylobacter fetus subsp. fetus 82-40 4537832 YP_892340.1 CDS CFF8240_1182 NC_008599.1 1166203 1168011 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2 complement(1166203..1168011) Campylobacter fetus subsp. fetus 82-40 4537834 YP_892341.1 CDS CFF8240_1183 NC_008599.1 1168008 1168442 R hypothetical protein complement(1168008..1168442) Campylobacter fetus subsp. fetus 82-40 4539480 YP_892342.1 CDS CFF8240_1184 NC_008599.1 1168463 1168921 R catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate; acetyltransferase complement(1168463..1168921) Campylobacter fetus subsp. fetus 82-40 4538465 YP_892343.1 CDS engB NC_008599.1 1168928 1169524 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1168928..1169524) Campylobacter fetus subsp. fetus 82-40 4539172 YP_892344.1 CDS CFF8240_1186 NC_008599.1 1169528 1169995 R identified by match to protein family HMM PF03968; OstA family protein complement(1169528..1169995) Campylobacter fetus subsp. fetus 82-40 4537932 YP_892345.1 CDS CFF8240_1187 NC_008599.1 1169977 1170474 R hypothetical protein complement(1169977..1170474) Campylobacter fetus subsp. fetus 82-40 4539531 YP_892346.1 CDS CFF8240_1188 NC_008599.1 1170489 1170977 R identified by match to protein family HMM TIGR01670; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(1170489..1170977) Campylobacter fetus subsp. fetus 82-40 4538210 YP_892347.1 CDS hisB NC_008599.1 1170974 1171546 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(1170974..1171546) Campylobacter fetus subsp. fetus 82-40 4539133 YP_892348.1 CDS CFF8240_1190 NC_008599.1 1171547 1172266 R identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein a rlpa complement(1171547..1172266) Campylobacter fetus subsp. fetus 82-40 4538675 YP_892349.1 CDS CFF8240_1191 NC_008599.1 1172313 1173527 R identified by match to protein family HMM PF01464; match to protein family HMM PF01476; regulatory protein dnir complement(1172313..1173527) Campylobacter fetus subsp. fetus 82-40 4539304 YP_892350.1 CDS CFF8240_1192 NC_008599.1 1173536 1174300 R identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; protein YabD complement(1173536..1174300) Campylobacter fetus subsp. fetus 82-40 4538738 YP_892351.1 CDS CFF8240_1193 NC_008599.1 1174297 1175544 R identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(1174297..1175544) Campylobacter fetus subsp. fetus 82-40 4538421 YP_892352.1 CDS CFF8240_1194 NC_008599.1 1175610 1177133 R identified by match to protein family HMM PF02463; DNA repair protein RecN complement(1175610..1177133) Campylobacter fetus subsp. fetus 82-40 4539443 YP_892353.1 CDS pnk NC_008599.1 1177123 1177986 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(1177123..1177986) Campylobacter fetus subsp. fetus 82-40 4537924 YP_892354.1 CDS aspS NC_008599.1 1178165 1179919 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1178165..1179919 Campylobacter fetus subsp. fetus 82-40 4538540 YP_892355.1 CDS adk NC_008599.1 1179916 1180491 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1179916..1180491 Campylobacter fetus subsp. fetus 82-40 4538333 YP_892356.1 CDS ppa NC_008599.1 1180496 1181014 D identified by match to protein family HMM PF00719; inorganic pyrophosphatase 1180496..1181014 Campylobacter fetus subsp. fetus 82-40 4539488 YP_892357.1 CDS CFF8240_1199 NC_008599.1 1181076 1181519 R acetyltransferase complement(1181076..1181519) Campylobacter fetus subsp. fetus 82-40 4539416 YP_892358.1 CDS CFF8240_1200 NC_008599.1 1181568 1182101 R hypothetical protein complement(1181568..1182101) Campylobacter fetus subsp. fetus 82-40 4539114 YP_892359.1 CDS CFF8240_1201 NC_008599.1 1182189 1182962 R identified by match to protein family HMM PF00005; iron chelate ABC transporter ATP-binding protein complement(1182189..1182962) Campylobacter fetus subsp. fetus 82-40 4537827 YP_892360.1 CDS CFF8240_1202 NC_008599.1 1182953 1183933 R identified by match to protein family HMM PF01032; ABC transporter permease complement(1182953..1183933) Campylobacter fetus subsp. fetus 82-40 4537927 YP_892361.1 CDS CFF8240_1203 NC_008599.1 1183914 1184957 R identified by match to protein family HMM PF01497; putative periplasmic iron siderophore binding protein of ABC transporter complement(1183914..1184957) Campylobacter fetus subsp. fetus 82-40 4537788 YP_892362.1 CDS CFF8240_1204 NC_008599.1 1184954 1185574 R hypothetical protein complement(1184954..1185574) Campylobacter fetus subsp. fetus 82-40 4538452 YP_892363.1 CDS CFF8240_1205 NC_008599.1 1185567 1186166 R hypothetical protein complement(1185567..1186166) Campylobacter fetus subsp. fetus 82-40 4538055 YP_892364.1 CDS CFF8240_1206 NC_008599.1 1186175 1188241 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; putative TonB-dependent receptor complement(1186175..1188241) Campylobacter fetus subsp. fetus 82-40 4537902 YP_892365.1 CDS CFF8240_1207 NC_008599.1 1188343 1189266 D identified by match to protein family HMM PF00165; transcriptional regulatory protein 1188343..1189266 Campylobacter fetus subsp. fetus 82-40 4538794 YP_892366.1 CDS mnmC NC_008599.1 1189313 1191151 R catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase complement(1189313..1191151) Campylobacter fetus subsp. fetus 82-40 4539163 YP_892367.1 CDS CFF8240_1209 NC_008599.1 1191148 1192557 R identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase complement(1191148..1192557) Campylobacter fetus subsp. fetus 82-40 4538381 YP_892368.1 CDS CFF8240_1210 NC_008599.1 1192751 1193863 R identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase complement(1192751..1193863) Campylobacter fetus subsp. fetus 82-40 4538491 YP_892369.1 CDS tyrS NC_008599.1 1193863 1195071 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(1193863..1195071) Campylobacter fetus subsp. fetus 82-40 4539198 YP_892370.1 CDS CFF8240_1212 NC_008599.1 1195073 1197271 R identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase complement(1195073..1197271) Campylobacter fetus subsp. fetus 82-40 4538539 YP_892371.1 CDS rpoZ NC_008599.1 1197255 1197476 R Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(1197255..1197476) Campylobacter fetus subsp. fetus 82-40 4538056 YP_892372.1 CDS pyrH NC_008599.1 1197489 1198205 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1197489..1198205) Campylobacter fetus subsp. fetus 82-40 4537777 YP_892373.1 CDS CFF8240_1215 NC_008599.1 1198261 1199427 R identified by match to protein family HMM PF01551; M24/M37 family peptidase complement(1198261..1199427) Campylobacter fetus subsp. fetus 82-40 4538661 YP_892374.1 CDS CFF8240_1216 NC_008599.1 1199463 1200200 R cell division protein FtsX complement(1199463..1200200) Campylobacter fetus subsp. fetus 82-40 4539219 YP_892375.1 CDS CFF8240_1217 NC_008599.1 1200262 1200933 R identified by match to protein family HMM PF00005; lipoprotein releasing system ATP-binding protein LolD complement(1200262..1200933) Campylobacter fetus subsp. fetus 82-40 4538845 YP_892376.1 CDS trmB NC_008599.1 1200918 1202105 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(1200918..1202105) Campylobacter fetus subsp. fetus 82-40 4538618 YP_892377.1 CDS CFF8240_1219 NC_008599.1 1202105 1203271 R identified by match to protein family HMM PF00041; fibronectin type III domain-containing protein complement(1202105..1203271) Campylobacter fetus subsp. fetus 82-40 4538558 YP_892378.1 CDS CFF8240_1220 NC_008599.1 1203252 1204223 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal pseudouridine synthase complement(1203252..1204223) Campylobacter fetus subsp. fetus 82-40 4539474 YP_892379.1 CDS CFF8240_1222 NC_008599.1 1204275 1205381 D identified by match to protein family HMM PF01098; cell cycle protein 1204275..1205381 Campylobacter fetus subsp. fetus 82-40 4539034 YP_892380.1 CDS CFF8240_1221 NC_008599.1 1205378 1205935 R identified by match to protein family HMM PF02630; SCO1/SenC family protein complement(1205378..1205935) Campylobacter fetus subsp. fetus 82-40 4538767 YP_892381.1 CDS CFF8240_1223 NC_008599.1 1206098 1207243 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1206098..1207243 Campylobacter fetus subsp. fetus 82-40 4538932 YP_892382.1 CDS CFF8240_1224 NC_008599.1 1207373 1207705 R identified by match to protein family HMM PF01638; transcriptional regulator complement(1207373..1207705) Campylobacter fetus subsp. fetus 82-40 4538238 YP_892383.1 CDS CFF8240_1225 NC_008599.1 1207945 1208580 D hypothetical protein 1207945..1208580 Campylobacter fetus subsp. fetus 82-40 4539122 YP_892384.1 CDS CFF8240_1226 NC_008599.1 1208684 1209667 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation diffusion facilitator family transporter complement(1208684..1209667) Campylobacter fetus subsp. fetus 82-40 4538807 YP_892385.1 CDS CFF8240_1227 NC_008599.1 1209841 1211502 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(1209841..1211502) Campylobacter fetus subsp. fetus 82-40 4537908 YP_892386.1 CDS putP NC_008599.1 1212076 1213590 R identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; sodium/proline symporter complement(1212076..1213590) Campylobacter fetus subsp. fetus 82-40 4538763 YP_892387.1 CDS CFF8240_1230 NC_008599.1 1213699 1214418 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine amino acid ABC transporter permease 1213699..1214418 Campylobacter fetus subsp. fetus 82-40 4538764 YP_892388.1 CDS CFF8240_1231 NC_008599.1 1214411 1215139 D identified by match to protein family HMM PF00005; amino acid ABC transporter, ATP-binding protein 1214411..1215139 Campylobacter fetus subsp. fetus 82-40 4538108 YP_892389.1 CDS CFF8240_1232 NC_008599.1 1215155 1215883 D identified by match to protein family HMM PF00497; arginine-binding periplasmic protein 1 1215155..1215883 Campylobacter fetus subsp. fetus 82-40 4538466 YP_892390.1 CDS CFF8240_1233 NC_008599.1 1215911 1216636 D identified by match to protein family HMM PF00497; CjaC 1215911..1216636 Campylobacter fetus subsp. fetus 82-40 4538169 YP_892391.1 CDS CFF8240_1234 NC_008599.1 1216674 1217282 D identified by match to protein family HMM PF02581; thiamine-phosphate pyrophosphorylase 1216674..1217282 Campylobacter fetus subsp. fetus 82-40 4538552 YP_892392.1 CDS CFF8240_1235 NC_008599.1 1217283 1218059 D identified by match to protein family HMM PF02673; match to protein family HMM TIGR00753; undecaprenol kinase 1217283..1218059 Campylobacter fetus subsp. fetus 82-40 4537803 YP_892393.1 CDS CFF8240_1236 NC_008599.1 1218139 1219419 R identified by match to protein family HMM PF00266; putative aminotransferase complement(1218139..1219419) Campylobacter fetus subsp. fetus 82-40 4537824 YP_892394.1 CDS CFF8240_1237 NC_008599.1 1219590 1220375 D identified by match to protein family HMM PF03008; ATPase 1219590..1220375 Campylobacter fetus subsp. fetus 82-40 4539154 YP_892395.1 CDS CFF8240_1239 NC_008599.1 1220368 1221369 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1220368..1221369 Campylobacter fetus subsp. fetus 82-40 4538822 YP_892396.1 CDS dnaE NC_008599.1 1221356 1225351 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(1221356..1225351) Campylobacter fetus subsp. fetus 82-40 4538182 YP_892397.1 CDS CFF8240_1240 NC_008599.1 1225456 1225704 R identified by match to protein family HMM PF00076; RNA-binding region RNP-1 complement(1225456..1225704) Campylobacter fetus subsp. fetus 82-40 4538742 YP_892398.1 CDS CFF8240_1241 NC_008599.1 1226089 1229589 D identified by match to protein family HMM PF00171; match to protein family HMM PF01619; proline/pyrroline-5-carboxylate dehydrogenase 1226089..1229589 Campylobacter fetus subsp. fetus 82-40 4538505 YP_892399.1 CDS putP NC_008599.1 1229593 1231068 D identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121; sodium/proline symporter 1229593..1231068 Campylobacter fetus subsp. fetus 82-40 4539264 YP_892400.1 CDS CFF8240_1243 NC_008599.1 1231318 1231818 D cytochrome c-type protein NrfH 1231318..1231818 Campylobacter fetus subsp. fetus 82-40 4538014 YP_892401.1 CDS nrfA NC_008599.1 1231834 1233657 D identified by match to protein family HMM PF02335; nitrite reductase 1231834..1233657 Campylobacter fetus subsp. fetus 82-40 4537919 YP_892402.1 CDS thiJ NC_008599.1 1233769 1234308 R identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein complement(1233769..1234308) Campylobacter fetus subsp. fetus 82-40 4538728 YP_892403.1 CDS efp NC_008599.1 1235101 1235670 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1235101..1235670) Campylobacter fetus subsp. fetus 82-40 4538278 YP_892404.1 CDS serA NC_008599.1 1235685 1237262 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(1235685..1237262) Campylobacter fetus subsp. fetus 82-40 4539525 YP_892405.1 CDS CFF8240_1249 NC_008599.1 1237266 1237739 R hypothetical protein complement(1237266..1237739) Campylobacter fetus subsp. fetus 82-40 4538487 YP_892406.1 CDS rpsA NC_008599.1 1237747 1239420 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(1237747..1239420) Campylobacter fetus subsp. fetus 82-40 4537785 YP_892407.1 CDS ispH NC_008599.1 1239521 1240360 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(1239521..1240360) Campylobacter fetus subsp. fetus 82-40 4539553 YP_892408.1 CDS aroA NC_008599.1 1240350 1241627 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1240350..1241627) Campylobacter fetus subsp. fetus 82-40 4538627 YP_892409.1 CDS pheT NC_008599.1 1241624 1243960 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1241624..1243960) Campylobacter fetus subsp. fetus 82-40 4538301 YP_892410.1 CDS pheS NC_008599.1 1243957 1244949 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(1243957..1244949) Campylobacter fetus subsp. fetus 82-40 4538960 YP_892411.1 CDS CFF8240_1255 NC_008599.1 1245077 1245436 D identified by match to protein family HMM PF01230; HIT family protein 1245077..1245436 Campylobacter fetus subsp. fetus 82-40 4538128 YP_892412.1 CDS CFF8240_1256 NC_008599.1 1245462 1246310 R hypothetical protein complement(1245462..1246310) Campylobacter fetus subsp. fetus 82-40 4538483 YP_892413.1 CDS CFF8240_1257 NC_008599.1 1246332 1248518 R identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase complement(1246332..1248518) Campylobacter fetus subsp. fetus 82-40 4538697 YP_892414.1 CDS CFF8240_1258 NC_008599.1 1248528 1249208 R hypothetical protein complement(1248528..1249208) Campylobacter fetus subsp. fetus 82-40 4537778 YP_892415.1 CDS CFF8240_1259 NC_008599.1 1249205 1251361 R identified by match to protein family HMM PF04453; hypothetical protein complement(1249205..1251361) Campylobacter fetus subsp. fetus 82-40 4537749 YP_892416.1 CDS CFF8240_1260 NC_008599.1 1251381 1251836 R identified by match to protein family HMM PF06271; RDD protein complement(1251381..1251836) Campylobacter fetus subsp. fetus 82-40 4537867 YP_892417.1 CDS purD NC_008599.1 1251833 1253080 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(1251833..1253080) Campylobacter fetus subsp. fetus 82-40 4538187 YP_892418.1 CDS hemD NC_008599.1 1253337 1253972 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(1253337..1253972) Campylobacter fetus subsp. fetus 82-40 4538393 YP_892419.1 CDS CFF8240_1263 NC_008599.1 1253977 1254450 R Mug G:T/U mismatch-specific DNA glycosylase complement(1253977..1254450) Campylobacter fetus subsp. fetus 82-40 4539022 YP_892420.1 CDS guaA NC_008599.1 1254465 1255997 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(1254465..1255997) Campylobacter fetus subsp. fetus 82-40 4539261 YP_892421.1 CDS CFF8240_1265 NC_008599.1 1256194 1256634 D hypothetical protein 1256194..1256634 Campylobacter fetus subsp. fetus 82-40 4538622 YP_892422.1 CDS uvrC NC_008599.1 1256621 1258429 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1256621..1258429 Campylobacter fetus subsp. fetus 82-40 4539195 YP_892423.1 CDS CFF8240_1267 NC_008599.1 1258549 1259244 D hypothetical protein 1258549..1259244 Campylobacter fetus subsp. fetus 82-40 4538815 YP_892424.1 CDS CFF8240_1268 NC_008599.1 1259241 1262291 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 1259241..1262291 Campylobacter fetus subsp. fetus 82-40 4537808 YP_892425.1 CDS CFF8240_1269 NC_008599.1 1262298 1262678 D identified by match to protein family HMM PF00072; response regulator receiver domain-containing protein 1262298..1262678 Campylobacter fetus subsp. fetus 82-40 4538370 YP_892426.1 CDS CFF8240_1270 NC_008599.1 1262685 1263095 R protein YhbP complement(1262685..1263095) Campylobacter fetus subsp. fetus 82-40 4537822 YP_892427.1 CDS CFF8240_1271 NC_008599.1 1263186 1263713 D putative ATP/GTP-binding protein 1263186..1263713 Campylobacter fetus subsp. fetus 82-40 4537952 YP_892428.1 CDS CFF8240_1272 NC_008599.1 1263769 1264464 D deoxyuridine triphosphatase domain-containing protein 1263769..1264464 Campylobacter fetus subsp. fetus 82-40 4539210 YP_892429.1 CDS CFF8240_1273 NC_008599.1 1264461 1265177 D putative integral membrane protein 1264461..1265177 Campylobacter fetus subsp. fetus 82-40 4539054 YP_892430.1 CDS CFF8240_1274 NC_008599.1 1265187 1266953 D identified by match to protein family HMM PF02690; Na+/Pi-cotransporter 1265187..1266953 Campylobacter fetus subsp. fetus 82-40 4539446 YP_892431.1 CDS CFF8240_1275 NC_008599.1 1267015 1267206 D hypothetical protein 1267015..1267206 Campylobacter fetus subsp. fetus 82-40 4538034 YP_892432.1 CDS CFF8240_1276 NC_008599.1 1267508 1267840 D identified by match to protein family HMM PF04341; inner membrane protein YjcH 1267508..1267840 Campylobacter fetus subsp. fetus 82-40 4538416 YP_892433.1 CDS actP NC_008599.1 1267837 1269450 D member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 1267837..1269450 Campylobacter fetus subsp. fetus 82-40 4538997 YP_892434.1 CDS CFF8240_1278 NC_008599.1 1269488 1269898 R identified by match to protein family HMM PF03061; acyl-CoA hydrolase complement(1269488..1269898) Campylobacter fetus subsp. fetus 82-40 4538287 YP_892435.1 CDS CFF8240_1279 NC_008599.1 1269984 1270997 R identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401; peptide methionine sulfoxide reductase MsrA/msrB complement(1269984..1270997) Campylobacter fetus subsp. fetus 82-40 4538122 YP_892436.1 CDS CFF8240_1280 NC_008599.1 1271173 1272993 D invasion antigen B 1271173..1272993 Campylobacter fetus subsp. fetus 82-40 4538744 YP_892437.1 CDS CFF8240_1281 NC_008599.1 1273104 1273406 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 1273104..1273406 Campylobacter fetus subsp. fetus 82-40 4538642 YP_892438.1 CDS CFF8240_1283 NC_008599.1 1273894 1274193 R similar to P. aerophilum; hypothetical protein complement(1273894..1274193) Campylobacter fetus subsp. fetus 82-40 4538023 YP_892439.1 CDS CFF8240_1284 NC_008599.1 1274334 1275227 D identified by match to protein family HMM PF00165; match to protein family HMM PF06719; AraC family transcriptional regulator 1274334..1275227 Campylobacter fetus subsp. fetus 82-40 4538479 YP_892440.1 CDS CFF8240_1285 NC_008599.1 1275320 1276465 D identified by match to protein family HMM PF00465; NADH-dependent butanol dehydrogenase a 1275320..1276465 Campylobacter fetus subsp. fetus 82-40 4539024 YP_892441.1 CDS CFF8240_1286 NC_008599.1 1276530 1276655 D hypothetical protein 1276530..1276655 Campylobacter fetus subsp. fetus 82-40 4537984 YP_892442.1 CDS CFF8240_1287 NC_008599.1 1276774 1277019 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1276774..1277019 Campylobacter fetus subsp. fetus 82-40 4537821 YP_892443.1 CDS CFF8240_1289 NC_008599.1 1277142 1277363 D putative periplasmic ATP/GTP-binding protein 1277142..1277363 Campylobacter fetus subsp. fetus 82-40 4538244 YP_892444.1 CDS CFF8240_1288 NC_008599.1 1277356 1277484 R hypothetical protein complement(1277356..1277484) Campylobacter fetus subsp. fetus 82-40 4538373 YP_892445.1 CDS CFF8240_1290 NC_008599.1 1277884 1278339 D hypothetical protein 1277884..1278339 Campylobacter fetus subsp. fetus 82-40 4539149 YP_892446.1 CDS CFF8240_1291 NC_008599.1 1278980 1279594 D hypothetical protein 1278980..1279594 Campylobacter fetus subsp. fetus 82-40 4539090 YP_892447.1 CDS CFF8240_1292 NC_008599.1 1279827 1281203 D identified by match to protein family HMM PF00209; sodium- and chloride-dependent transporter 1279827..1281203 Campylobacter fetus subsp. fetus 82-40 4539202 YP_892448.1 CDS CFF8240_1293 NC_008599.1 1281231 1283072 D identified by match to protein family HMM PF00364; match to protein family HMM PF00682; biotin/lipoyl attachment 1281231..1283072 Campylobacter fetus subsp. fetus 82-40 4538129 YP_892449.1 CDS pckA NC_008599.1 1283229 1284806 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 1283229..1284806 Campylobacter fetus subsp. fetus 82-40 4539517 YP_892450.1 CDS argH NC_008599.1 1284970 1286484 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1284970..1286484 Campylobacter fetus subsp. fetus 82-40 4539275 YP_892451.1 CDS CFF8240_1296 NC_008599.1 1286652 1286885 D identified by match to protein family HMM PF04023; FeoA domain-containing protein 1286652..1286885 Campylobacter fetus subsp. fetus 82-40 4538353 YP_892452.1 CDS feoB NC_008599.1 1288593 1288991 D ferrous iron transport protein B 1288593..1288991 Campylobacter fetus subsp. fetus 82-40 4538230 YP_892453.1 CDS CFF8240_1299 NC_008599.1 1289057 1289680 D identified by match to protein family HMM PF02525; acyl carrier protein phosphodiesterase 1289057..1289680 Campylobacter fetus subsp. fetus 82-40 4538235 YP_892454.1 CDS CFF8240_1300 NC_008599.1 1290006 1290137 D hypothetical protein 1290006..1290137 Campylobacter fetus subsp. fetus 82-40 4537922 YP_892455.1 CDS CFF8240_1301 NC_008599.1 1290374 1290559 D hypothetical protein 1290374..1290559 Campylobacter fetus subsp. fetus 82-40 4539375 YP_892456.1 CDS CFF8240_1302 NC_008599.1 1290681 1290815 R hypothetical protein complement(1290681..1290815) Campylobacter fetus subsp. fetus 82-40 4539085 YP_892457.1 CDS CFF8240_1304 NC_008599.1 1291300 1292868 R identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; multicopper oxidase family protein complement(1291300..1292868) Campylobacter fetus subsp. fetus 82-40 4538947 YP_892458.1 CDS CFF8240_1305 NC_008599.1 1293090 1295048 D identified by match to protein family HMM PF00015; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1293090..1295048 Campylobacter fetus subsp. fetus 82-40 4538656 YP_892459.1 CDS CFF8240_1306 NC_008599.1 1295054 1295179 R hypothetical protein complement(1295054..1295179) Campylobacter fetus subsp. fetus 82-40 4537995 YP_892460.1 CDS CFF8240_1307 NC_008599.1 1295892 1297682 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1295892..1297682 Campylobacter fetus subsp. fetus 82-40 4539108 YP_892461.1 CDS CFF8240_1308 NC_008599.1 1298066 1298197 R hypothetical protein complement(1298066..1298197) Campylobacter fetus subsp. fetus 82-40 4539002 YP_892462.1 CDS CFF8240_1309 NC_008599.1 1298263 1298457 D hypothetical protein 1298263..1298457 Campylobacter fetus subsp. fetus 82-40 4538065 YP_892463.1 CDS fusA NC_008599.1 1298859 1300934 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(1298859..1300934) Campylobacter fetus subsp. fetus 82-40 4538186 YP_892464.1 CDS rpsG NC_008599.1 1300947 1301417 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(1300947..1301417) Campylobacter fetus subsp. fetus 82-40 4538358 YP_892465.2 CDS rpsL NC_008599.1 1301484 1301867 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(1301484..1301867) Campylobacter fetus subsp. fetus 82-40 4538783 YP_892466.1 CDS CFF8240_1315 NC_008599.1 1301951 1302067 D hypothetical protein 1301951..1302067 Campylobacter fetus subsp. fetus 82-40 4538988 YP_892467.1 CDS rpoC NC_008599.1 1302048 1306574 R identified by match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386; DNA-directed RNA polymerase subunit beta' complement(1302048..1306574) Campylobacter fetus subsp. fetus 82-40 4537850 YP_892468.1 CDS rpoB NC_008599.1 1306567 1310706 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(1306567..1310706) Campylobacter fetus subsp. fetus 82-40 4538217 YP_892469.1 CDS rplL NC_008599.1 1310807 1311181 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(1310807..1311181) Campylobacter fetus subsp. fetus 82-40 4538546 YP_892470.1 CDS rplJ NC_008599.1 1311214 1311699 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(1311214..1311699) Campylobacter fetus subsp. fetus 82-40 4539212 YP_892471.1 CDS rplA NC_008599.1 1311805 1312509 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(1311805..1312509) Campylobacter fetus subsp. fetus 82-40 4538083 YP_892472.1 CDS rplK NC_008599.1 1312569 1312994 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(1312569..1312994) Campylobacter fetus subsp. fetus 82-40 4539101 YP_892473.1 CDS nusG NC_008599.1 1313012 1313542 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(1313012..1313542) Campylobacter fetus subsp. fetus 82-40 4539373 YP_892474.1 CDS secE NC_008599.1 1313552 1313731 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(1313552..1313731) Campylobacter fetus subsp. fetus 82-40 4538200 YP_892475.1 CDS rpmG NC_008599.1 1313847 1314014 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1313847..1314014) Campylobacter fetus subsp. fetus 82-40 4537849 YP_892476.1 CDS tuf NC_008599.1 1314062 1315261 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(1314062..1315261) Campylobacter fetus subsp. fetus 82-40 4538542 YP_892477.1 CDS sodC NC_008599.1 1316041 1316601 R identified by match to protein family HMM PF00080; copper/zinc superoxide dismutase complement(1316041..1316601) Campylobacter fetus subsp. fetus 82-40 4538438 YP_892478.1 CDS pyrF NC_008599.1 1316877 1317560 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1316877..1317560) Campylobacter fetus subsp. fetus 82-40 4539001 YP_892479.1 CDS nusB NC_008599.1 1317560 1317955 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(1317560..1317955) Campylobacter fetus subsp. fetus 82-40 4538638 YP_892480.1 CDS ribH NC_008599.1 1317957 1318427 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(1317957..1318427) Campylobacter fetus subsp. fetus 82-40 4538039 YP_892481.1 CDS CFF8240_1335 NC_008599.1 1318481 1318801 R identified by match to protein family HMM PF00893; multidrug resistance protein YkkD complement(1318481..1318801) Campylobacter fetus subsp. fetus 82-40 4539562 YP_892482.1 CDS CFF8240_1336 NC_008599.1 1318801 1319127 R identified by match to protein family HMM PF00893; chaperonin complement(1318801..1319127) Campylobacter fetus subsp. fetus 82-40 4538669 YP_892483.1 CDS kdsA NC_008599.1 1319132 1319962 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1319132..1319962) Campylobacter fetus subsp. fetus 82-40 4539469 YP_892484.1 CDS CFF8240_1338 NC_008599.1 1319984 1320874 R identified by match to protein family HMM PF00892; integral membrane protein complement(1319984..1320874) Campylobacter fetus subsp. fetus 82-40 4539176 YP_892485.1 CDS engA NC_008599.1 1321002 1322393 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1321002..1322393 Campylobacter fetus subsp. fetus 82-40 4539147 YP_892486.1 CDS aroK NC_008599.1 1322383 1322916 D identified by match to protein family HMM PF01202; shikimate kinase 1322383..1322916 Campylobacter fetus subsp. fetus 82-40 4539319 YP_892487.1 CDS trpS NC_008599.1 1322920 1323891 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1322920..1323891 Campylobacter fetus subsp. fetus 82-40 4538955 YP_892488.1 CDS serS NC_008599.1 1323901 1325145 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1323901..1325145 Campylobacter fetus subsp. fetus 82-40 4538357 YP_892489.1 CDS CFF8240_1343 NC_008599.1 1325155 1327485 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1325155..1327485 Campylobacter fetus subsp. fetus 82-40 4537780 YP_892490.1 CDS leuA NC_008599.1 1327499 1329019 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(1327499..1329019) Campylobacter fetus subsp. fetus 82-40 4539073 YP_892491.1 CDS pssA NC_008599.1 1329182 1329916 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(1329182..1329916) Campylobacter fetus subsp. fetus 82-40 4539522 YP_892492.1 CDS psd NC_008599.1 1329921 1330538 R identified by match to protein family HMM PF02666; phosphatidylserine decarboxylase complement(1329921..1330538) Campylobacter fetus subsp. fetus 82-40 4538266 YP_892493.1 CDS CFF8240_1347 NC_008599.1 1330541 1332472 R identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; putative cell division protein FtsH-like protein complement(1330541..1332472) Campylobacter fetus subsp. fetus 82-40 4538263 YP_892494.1 CDS prmA NC_008599.1 1332462 1333289 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(1332462..1333289) Campylobacter fetus subsp. fetus 82-40 4539414 YP_892495.1 CDS hisA NC_008599.1 1333719 1334429 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(1333719..1334429) Campylobacter fetus subsp. fetus 82-40 4538254 YP_892496.1 CDS hisH NC_008599.1 1334429 1335040 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(1334429..1335040) Campylobacter fetus subsp. fetus 82-40 4538229 YP_892497.1 CDS CFF8240_1353 NC_008599.1 1335024 1335929 R general glycosylation pathway protein complement(1335024..1335929) Campylobacter fetus subsp. fetus 82-40 4538025 YP_892498.1 CDS CFF8240_1354 NC_008599.1 1335931 1337718 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; putative epimerase/dehydratase WbiI complement(1335931..1337718) Campylobacter fetus subsp. fetus 82-40 4539334 YP_892499.1 CDS CFF8240_1355 NC_008599.1 1337715 1338809 R identified by match to protein family HMM PF01041; match to protein family HMM PF01212; perosamine synthetase complement(1337715..1338809) Campylobacter fetus subsp. fetus 82-40 4538851 YP_892500.1 CDS CFF8240_1356 NC_008599.1 1339049 1339573 D identified by match to protein family HMM PF02525; general stress protein 14 1339049..1339573 Campylobacter fetus subsp. fetus 82-40 4538415 YP_892501.1 CDS murD NC_008599.1 1339889 1341085 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(1339889..1341085) Campylobacter fetus subsp. fetus 82-40 4538091 YP_892502.1 CDS mraY NC_008599.1 1341089 1342153 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(1341089..1342153) Campylobacter fetus subsp. fetus 82-40 4538440 YP_892503.1 CDS gpmI NC_008599.1 1342252 1343715 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1342252..1343715 Campylobacter fetus subsp. fetus 82-40 4539254 YP_892504.1 CDS fabG NC_008599.1 1343740 1344483 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1343740..1344483 Campylobacter fetus subsp. fetus 82-40 4538022 YP_892505.1 CDS acpP NC_008599.1 1344544 1344777 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1344544..1344777 Campylobacter fetus subsp. fetus 82-40 4537879 YP_892506.1 CDS CFF8240_1363 NC_008599.1 1344799 1346013 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1344799..1346013 Campylobacter fetus subsp. fetus 82-40 4539478 YP_892507.1 CDS accA NC_008599.1 1346013 1346945 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1346013..1346945 Campylobacter fetus subsp. fetus 82-40 4538756 YP_892508.1 CDS CFF8240_1365 NC_008599.1 1346981 1347379 R hypothetical protein complement(1346981..1347379) Campylobacter fetus subsp. fetus 82-40 4539057 YP_892509.1 CDS CFF8240_1368 NC_008599.1 1348715 1349038 R hypothetical protein complement(1348715..1349038) Campylobacter fetus subsp. fetus 82-40 4538021 YP_892510.1 CDS prfB NC_008599.1 1349084 1350193 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(1349084..1350193) Campylobacter fetus subsp. fetus 82-40 4538590 YP_892511.1 CDS panC NC_008599.1 1350365 1351186 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 1350365..1351186 Campylobacter fetus subsp. fetus 82-40 4538844 YP_892512.1 CDS CFF8240_1371 NC_008599.1 1351188 1352498 D identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; hypothetical protein 1351188..1352498 Campylobacter fetus subsp. fetus 82-40 4539542 YP_892513.1 CDS CFF8240_1373 NC_008599.1 1352486 1353496 D identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; tRNA(Ile)-lysidine synthase 1352486..1353496 Campylobacter fetus subsp. fetus 82-40 4539347 YP_892514.1 CDS CFF8240_1372 NC_008599.1 1353459 1353995 R hypothetical protein complement(1353459..1353995) Campylobacter fetus subsp. fetus 82-40 4538645 YP_892515.1 CDS CFF8240_1374 NC_008599.1 1353982 1354509 R hypothetical protein complement(1353982..1354509) Campylobacter fetus subsp. fetus 82-40 4538332 YP_892516.1 CDS CFF8240_1375 NC_008599.1 1354506 1355507 R hypothetical protein complement(1354506..1355507) Campylobacter fetus subsp. fetus 82-40 4538812 YP_892517.1 CDS CFF8240_1376 NC_008599.1 1355574 1356185 R identified by match to protein family HMM PF04028; lipoprotein complement(1355574..1356185) Campylobacter fetus subsp. fetus 82-40 4539126 YP_892518.1 CDS miaB NC_008599.1 1356169 1357473 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1356169..1357473) Campylobacter fetus subsp. fetus 82-40 4538848 YP_892519.1 CDS CFF8240_1378 NC_008599.1 1357470 1357712 R hypothetical protein complement(1357470..1357712) Campylobacter fetus subsp. fetus 82-40 4539529 YP_892520.1 CDS nusA NC_008599.1 1357914 1359011 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1357914..1359011 Campylobacter fetus subsp. fetus 82-40 4539036 YP_892521.1 CDS CFF8240_1380 NC_008599.1 1359066 1359644 R identified by match to protein family HMM PF00132; general glycosylation pathway protein complement(1359066..1359644) Campylobacter fetus subsp. fetus 82-40 4538349 YP_892522.1 CDS CFF8240_1381 NC_008599.1 1359653 1360258 R identified by match to protein family HMM PF02397; general glycosylation pathway protein complement(1359653..1360258) Campylobacter fetus subsp. fetus 82-40 4538550 YP_892523.1 CDS CFF8240_1382 NC_008599.1 1360251 1361363 R identified by match to protein family HMM PF00534; galactosyltransferase complement(1360251..1361363) Campylobacter fetus subsp. fetus 82-40 4538362 YP_892524.1 CDS CFF8240_1383 NC_008599.1 1361368 1363644 R identified by match to protein family HMM PF02516; general glycosylation pathway protein complement(1361368..1363644) Campylobacter fetus subsp. fetus 82-40 4537945 YP_892525.1 CDS CFF8240_1384 NC_008599.1 1363628 1364749 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(1363628..1364749) Campylobacter fetus subsp. fetus 82-40 4539177 YP_892526.1 CDS CFF8240_1385 NC_008599.1 1364746 1365786 R identified by match to protein family HMM PF00534; general glycosylation pathway protein complement(1364746..1365786) Campylobacter fetus subsp. fetus 82-40 4538865 YP_892527.1 CDS CFF8240_1386 NC_008599.1 1365783 1366835 R identified by match to protein family HMM PF00534; general glycosylation pathway protein complement(1365783..1366835) Campylobacter fetus subsp. fetus 82-40 4538113 YP_892528.1 CDS CFF8240_1387 NC_008599.1 1366852 1368366 R identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein complement(1366852..1368366) Campylobacter fetus subsp. fetus 82-40 4539260 YP_892529.1 CDS CFF8240_1388 NC_008599.1 1368521 1369849 R identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose 6-dehydrogenase complement(1368521..1369849) Campylobacter fetus subsp. fetus 82-40 4538375 YP_892530.1 CDS CFF8240_1389 NC_008599.1 1369938 1370939 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 1369938..1370939 Campylobacter fetus subsp. fetus 82-40 4537823 YP_892531.1 CDS CFF8240_1390 NC_008599.1 1370944 1372461 D hypothetical protein 1370944..1372461 Campylobacter fetus subsp. fetus 82-40 4537805 YP_892532.1 CDS CFF8240_1391 NC_008599.1 1372549 1372842 D identified by match to protein family HMM PF04138; GtrA family protein 1372549..1372842 Campylobacter fetus subsp. fetus 82-40 4538251 YP_892533.1 CDS galE NC_008599.1 1372843 1373835 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase complement(1372843..1373835) Campylobacter fetus subsp. fetus 82-40 4537955 YP_892534.1 CDS CFF8240_1393 NC_008599.1 1373898 1377755 R identified by match to protein family HMM PF01420; match to protein family HMM PF02384; restriction and modification enzyme CjeI complement(1373898..1377755) Campylobacter fetus subsp. fetus 82-40 4538348 YP_892535.1 CDS CFF8240_1394 NC_008599.1 1377834 1378076 R hypothetical protein complement(1377834..1378076) Campylobacter fetus subsp. fetus 82-40 4539053 YP_892536.1 CDS CFF8240_1395 NC_008599.1 1378087 1378905 R catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase complement(1378087..1378905) Campylobacter fetus subsp. fetus 82-40 4537750 YP_892537.1 CDS CFF8240_1396 NC_008599.1 1378902 1379960 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; WbnF complement(1378902..1379960) Campylobacter fetus subsp. fetus 82-40 4538908 YP_892538.1 CDS CFF8240_1397 NC_008599.1 1379970 1381187 R identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; VI polysaccharide biosynthesis protein VipA/tviB complement(1379970..1381187) Campylobacter fetus subsp. fetus 82-40 4538566 YP_892539.1 CDS CFF8240_1398 NC_008599.1 1381229 1382047 R hypothetical protein complement(1381229..1382047) Campylobacter fetus subsp. fetus 82-40 4538257 YP_892540.1 CDS rfaC NC_008599.1 1382107 1383075 D identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193; lipopolysaccharide heptosyltransferase I 1382107..1383075 Campylobacter fetus subsp. fetus 82-40 4538927 YP_892541.1 CDS CFF8240_1400 NC_008599.1 1383068 1383952 D acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; essential for survival; plays a role in cell responses to environmental changes; lipid A biosynthesis lauroyl acyltransferase 1383068..1383952 Campylobacter fetus subsp. fetus 82-40 4538621 YP_892542.1 CDS CFF8240_1401 NC_008599.1 1383949 1384644 D identified by match to protein family HMM PF00535; glycosyltransferase 1383949..1384644 Campylobacter fetus subsp. fetus 82-40 4538591 YP_892543.1 CDS CFF8240_1403 NC_008599.1 1384641 1385711 D identified by match to protein family HMM PF01075; putative heptosyltransferase III waaq 1384641..1385711 Campylobacter fetus subsp. fetus 82-40 4538179 YP_892544.1 CDS CFF8240_1402 NC_008599.1 1385690 1386460 R identified by match to protein family HMM PF01522; xylanase/chitin deacetylase complement(1385690..1386460) Campylobacter fetus subsp. fetus 82-40 4538747 YP_892545.1 CDS CFF8240_1404 NC_008599.1 1387580 1388686 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(1387580..1388686) Campylobacter fetus subsp. fetus 82-40 4538378 YP_892546.1 CDS CFF8240_1407 NC_008599.1 1390804 1391724 R glycosyl transferase family protein complement(1390804..1391724) Campylobacter fetus subsp. fetus 82-40 4539504 YP_892547.1 CDS CFF8240_1408 NC_008599.1 1391696 1393003 R hypothetical protein complement(1391696..1393003) Campylobacter fetus subsp. fetus 82-40 4538795 YP_892548.1 CDS CFF8240_1409 NC_008599.1 1393091 1394122 D identified by match to protein family HMM PF00534; WabG 1393091..1394122 Campylobacter fetus subsp. fetus 82-40 4538132 YP_892549.1 CDS rfaF NC_008599.1 1394151 1395050 D identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195; lipopolysaccharide heptosyltransferase II 1394151..1395050 Campylobacter fetus subsp. fetus 82-40 4537970 YP_892550.1 CDS gmhA NC_008599.1 1395016 1395576 R identified by match to protein family HMM PF01380; match to protein family HMM TIGR00441; phosphoheptose isomerase complement(1395016..1395576) Campylobacter fetus subsp. fetus 82-40 4538253 YP_892551.1 CDS CFF8240_1412 NC_008599.1 1395586 1396275 R identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035; aspartate racemase complement(1395586..1396275) Campylobacter fetus subsp. fetus 82-40 4538364 YP_892552.1 CDS CFF8240_1413 NC_008599.1 1396281 1397657 R identified by match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02198; match to protein family HMM TIGR02199; bifunctional protein HldE complement(1396281..1397657) Campylobacter fetus subsp. fetus 82-40 4538506 YP_892553.1 CDS rfaD NC_008599.1 1397650 1398618 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197; ADP-L-glycero-D-manno-heptose-6-epimerase complement(1397650..1398618) Campylobacter fetus subsp. fetus 82-40 4538013 YP_892554.1 CDS CFF8240_1415 NC_008599.1 1398615 1399121 R identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; D,D-heptose 1,7-bisphosphate phosphatase complement(1398615..1399121) Campylobacter fetus subsp. fetus 82-40 4539234 YP_892555.1 CDS CFF8240_1416 NC_008599.1 1399252 1399566 D identified by match to protein family HMM PF00034; cytochrome c553 1399252..1399566 Campylobacter fetus subsp. fetus 82-40 4537819 YP_892556.1 CDS CFF8240_1417 NC_008599.1 1399628 1403155 R identified by match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601; serine protease complement(1399628..1403155) Campylobacter fetus subsp. fetus 82-40 4539232 YP_892557.1 CDS CFF8240_1418 NC_008599.1 1403383 1403697 D identified by match to protein family HMM PF00034; cytochrome c553 1403383..1403697 Campylobacter fetus subsp. fetus 82-40 4539455 YP_892558.1 CDS CFF8240_1419 NC_008599.1 1403701 1403931 R identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847; hypothetical protein complement(1403701..1403931) Campylobacter fetus subsp. fetus 82-40 4538414 YP_892559.1 CDS CFF8240_1420 NC_008599.1 1403934 1406303 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(1403934..1406303) Campylobacter fetus subsp. fetus 82-40 4538196 YP_892560.1 CDS rho NC_008599.1 1407341 1408675 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1407341..1408675 Campylobacter fetus subsp. fetus 82-40 4538044 YP_892561.1 CDS CFF8240_1423 NC_008599.1 1408685 1410274 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1408685..1410274 Campylobacter fetus subsp. fetus 82-40 4538189 YP_892562.1 CDS CFF8240_1422 NC_008599.1 1410271 1411053 R hypothetical protein complement(1410271..1411053) Campylobacter fetus subsp. fetus 82-40 4538363 YP_892563.1 CDS CFF8240_1424 NC_008599.1 1411050 1411460 R hypothetical protein complement(1411050..1411460) Campylobacter fetus subsp. fetus 82-40 4538354 YP_892564.1 CDS CFF8240_1425 NC_008599.1 1411565 1411816 D XRE family transcriptional regulator 1411565..1411816 Campylobacter fetus subsp. fetus 82-40 4538607 YP_892565.1 CDS CFF8240_1426 NC_008599.1 1411881 1412705 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(1411881..1412705) Campylobacter fetus subsp. fetus 82-40 4538484 YP_892566.1 CDS tpiA NC_008599.1 1412723 1413391 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(1412723..1413391) Campylobacter fetus subsp. fetus 82-40 4539123 YP_892567.1 CDS pgk NC_008599.1 1413506 1414711 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(1413506..1414711) Campylobacter fetus subsp. fetus 82-40 4539107 YP_892568.1 CDS gap NC_008599.1 1414713 1415705 R identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I complement(1414713..1415705) Campylobacter fetus subsp. fetus 82-40 4537921 YP_892569.1 CDS nadD NC_008599.1 1415765 1416310 D identified by match to protein family HMM PF01467; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase 1415765..1416310 Campylobacter fetus subsp. fetus 82-40 4538429 YP_892570.1 CDS CFF8240_1431 NC_008599.1 1416300 1416617 D identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; putative iojap-like protein 1416300..1416617 Campylobacter fetus subsp. fetus 82-40 4539429 YP_892571.1 CDS CFF8240_1432 NC_008599.1 1416640 1417668 R identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698; hypothetical protein complement(1416640..1417668) Campylobacter fetus subsp. fetus 82-40 4538945 YP_892572.1 CDS CFF8240_1434 NC_008599.1 1417768 1418649 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1417768..1418649 Campylobacter fetus subsp. fetus 82-40 4539451 YP_892573.1 CDS argS NC_008599.1 1418621 1420216 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(1418621..1420216) Campylobacter fetus subsp. fetus 82-40 4538829 YP_892574.1 CDS CFF8240_1435 NC_008599.1 1420216 1420431 R identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; hypothetical protein complement(1420216..1420431) Campylobacter fetus subsp. fetus 82-40 4538104 YP_892575.1 CDS gmk NC_008599.1 1420475 1421086 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1420475..1421086) Campylobacter fetus subsp. fetus 82-40 4539140 YP_892576.1 CDS CFF8240_1437 NC_008599.1 1421083 1422756 R hypothetical protein complement(1421083..1422756) Campylobacter fetus subsp. fetus 82-40 4538320 YP_892577.1 CDS fliR NC_008599.1 1422820 1423593 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(1422820..1423593) Campylobacter fetus subsp. fetus 82-40 4538700 YP_892578.1 CDS CFF8240_1439 NC_008599.1 1423778 1425844 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; TonB-dependent receptor protein 1423778..1425844 Campylobacter fetus subsp. fetus 82-40 4537798 YP_892579.1 CDS CFF8240_1440 NC_008599.1 1425881 1426525 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1425881..1426525) Campylobacter fetus subsp. fetus 82-40 4538276 YP_892580.1 CDS tsf NC_008599.1 1426528 1427592 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1426528..1427592) Campylobacter fetus subsp. fetus 82-40 4538943 YP_892581.1 CDS rpsB NC_008599.1 1427592 1428368 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1427592..1428368) Campylobacter fetus subsp. fetus 82-40 4539044 YP_892582.1 CDS CFF8240_1443 NC_008599.1 1428521 1428742 R hypothetical protein complement(1428521..1428742) Campylobacter fetus subsp. fetus 82-40 4538634 YP_892583.1 CDS CFF8240_1444 NC_008599.1 1428739 1429428 R identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein complement(1428739..1429428) Campylobacter fetus subsp. fetus 82-40 4539084 YP_892584.1 CDS ribE NC_008599.1 1429412 1430035 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1429412..1430035) Campylobacter fetus subsp. fetus 82-40 4539449 YP_892585.1 CDS gidA NC_008599.1 1430138 1432003 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1430138..1432003 Campylobacter fetus subsp. fetus 82-40 4539445 YP_892586.1 CDS CFF8240_1447 NC_008599.1 1432024 1432143 R hypothetical protein complement(1432024..1432143) Campylobacter fetus subsp. fetus 82-40 4538920 YP_892587.1 CDS petA NC_008599.1 1432388 1432894 D identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416; ubiquinol-cytochrome c reductase, iron-sulfur subunit 1432388..1432894 Campylobacter fetus subsp. fetus 82-40 4539379 YP_892588.1 CDS CFF8240_1449 NC_008599.1 1432905 1434152 D identified by match to protein family HMM PF00032; match to protein family HMM PF00033; ubiquinol--cytochrome c reductase, cytochrome b subunit 1432905..1434152 Campylobacter fetus subsp. fetus 82-40 4538081 YP_892589.1 CDS CFF8240_1450 NC_008599.1 1434149 1435174 D ubiquinol--cytochrome c reductase, cytochrome c1 subunit 1434149..1435174 Campylobacter fetus subsp. fetus 82-40 4539567 YP_892590.1 CDS CFF8240_1451 NC_008599.1 1435266 1435973 R hypothetical protein complement(1435266..1435973) Campylobacter fetus subsp. fetus 82-40 4538628 YP_892591.1 CDS CFF8240_1455 NC_008599.1 1437004 1437930 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(1437004..1437930) Campylobacter fetus subsp. fetus 82-40 4539196 YP_892592.1 CDS hemE NC_008599.1 1437927 1438958 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1437927..1438958) Campylobacter fetus subsp. fetus 82-40 4537787 YP_892593.1 CDS CFF8240_1457 NC_008599.1 1438979 1439488 R identified by match to protein family HMM PF03350; hypothetical protein complement(1438979..1439488) Campylobacter fetus subsp. fetus 82-40 4538530 YP_892594.1 CDS asd NC_008599.1 1439563 1440597 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(1439563..1440597) Campylobacter fetus subsp. fetus 82-40 4537987 YP_892595.1 CDS CFF8240_1459 NC_008599.1 1440662 1441804 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; acetoacetate metabolism regulatory protein AtoC complement(1440662..1441804) Campylobacter fetus subsp. fetus 82-40 4538952 YP_892596.1 CDS CFF8240_1460 NC_008599.1 1441809 1442159 R hypothetical protein complement(1441809..1442159) Campylobacter fetus subsp. fetus 82-40 4539288 YP_892597.1 CDS CFF8240_1461 NC_008599.1 1442174 1442659 R identified by match to protein family HMM PF04164; putative lipoprotein complement(1442174..1442659) Campylobacter fetus subsp. fetus 82-40 4537794 YP_892598.1 CDS gyrA NC_008599.1 1442701 1445289 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(1442701..1445289) Campylobacter fetus subsp. fetus 82-40 4539201 YP_892599.1 CDS CFF8240_1463 NC_008599.1 1445404 1446186 R hypothetical protein complement(1445404..1446186) Campylobacter fetus subsp. fetus 82-40 4539161 YP_892600.1 CDS CFF8240_1464 NC_008599.1 1446183 1446407 R putative acyl carrier protein complement(1446183..1446407) Campylobacter fetus subsp. fetus 82-40 4539393 YP_892601.1 CDS CFF8240_1465 NC_008599.1 1446545 1447141 R identified by match to protein family HMM PF00583; hypothetical protein complement(1446545..1447141) Campylobacter fetus subsp. fetus 82-40 4538469 YP_892602.1 CDS CFF8240_1466 NC_008599.1 1447269 1448753 R identified by match to protein family HMM PF00501; amino acid adenylation domain-containing protein complement(1447269..1448753) Campylobacter fetus subsp. fetus 82-40 4539552 YP_892603.1 CDS CFF8240_1469 NC_008599.1 1450035 1450604 R transformation system protein complement(1450035..1450604) Campylobacter fetus subsp. fetus 82-40 4539377 YP_892604.1 CDS CFF8240_1470 NC_008599.1 1450604 1451152 R hypothetical protein complement(1450604..1451152) Campylobacter fetus subsp. fetus 82-40 4538922 YP_892605.1 CDS CFF8240_1471 NC_008599.1 1451162 1451833 R outer membrane liproprotein MapA complement(1451162..1451833) Campylobacter fetus subsp. fetus 82-40 4539440 YP_892606.1 CDS CFF8240_1472 NC_008599.1 1451830 1452045 R identified by match to protein family HMM PF01361; match to protein family HMM TIGR00013; hypothetical protein complement(1451830..1452045) Campylobacter fetus subsp. fetus 82-40 4538770 YP_892607.1 CDS lepA NC_008599.1 1452076 1453866 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1452076..1453866) Campylobacter fetus subsp. fetus 82-40 4538672 YP_892608.1 CDS CFF8240_1474 NC_008599.1 1454078 1455007 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(1454078..1455007) Campylobacter fetus subsp. fetus 82-40 4539396 YP_892609.1 CDS pyrB NC_008599.1 1455119 1456051 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1455119..1456051 Campylobacter fetus subsp. fetus 82-40 4538148 YP_892610.1 CDS CFF8240_1476 NC_008599.1 1456055 1457335 D identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857; dihydroorotase 1456055..1457335 Campylobacter fetus subsp. fetus 82-40 4537994 YP_892611.1 CDS CFF8240_1477 NC_008599.1 1457450 1457941 R hypothetical protein complement(1457450..1457941) Campylobacter fetus subsp. fetus 82-40 4538307 YP_892612.1 CDS CFF8240_1478 NC_008599.1 1458389 1458880 D hypothetical protein 1458389..1458880 Campylobacter fetus subsp. fetus 82-40 4539442 YP_892613.1 CDS CFF8240_1479 NC_008599.1 1459077 1459553 D hypothetical protein 1459077..1459553 Campylobacter fetus subsp. fetus 82-40 4538996 YP_892614.1 CDS CFF8240_1480 NC_008599.1 1459576 1459824 D identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; transformation system protein 1459576..1459824 Campylobacter fetus subsp. fetus 82-40 4538410 YP_892615.1 CDS CFF8240_1481 NC_008599.1 1459817 1460113 D hypothetical protein 1459817..1460113 Campylobacter fetus subsp. fetus 82-40 4538201 YP_892616.1 CDS mnmA NC_008599.1 1460254 1461270 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1460254..1461270) Campylobacter fetus subsp. fetus 82-40 4538082 YP_892617.1 CDS CFF8240_1483 NC_008599.1 1461543 1462496 D identified by match to protein family HMM TIGR01583; formate dehydrogenase, cytochrome B subunit 1461543..1462496 Campylobacter fetus subsp. fetus 82-40 4539366 YP_892618.1 CDS CFF8240_1484 NC_008599.1 1462557 1463069 R hypothetical protein complement(1462557..1463069) Campylobacter fetus subsp. fetus 82-40 4539401 YP_892619.1 CDS CFF8240_1485 NC_008599.1 1463126 1463653 R identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein complement(1463126..1463653) Campylobacter fetus subsp. fetus 82-40 4539167 YP_892620.1 CDS gltD NC_008599.1 1463755 1465113 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318; glutamate synthase, small subunit complement(1463755..1465113) Campylobacter fetus subsp. fetus 82-40 4539305 YP_892621.1 CDS gltB NC_008599.1 1465115 1469512 R identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; glutamate synthase, large subunit complement(1465115..1469512) Campylobacter fetus subsp. fetus 82-40 4538480 YP_892622.1 CDS ribD NC_008599.1 1469651 1470661 R identified by match to protein family HMM PF00383; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD complement(1469651..1470661) Campylobacter fetus subsp. fetus 82-40 4538710 YP_892623.1 CDS CFF8240_1489 NC_008599.1 1470718 1470924 R hypothetical protein complement(1470718..1470924) Campylobacter fetus subsp. fetus 82-40 4539028 YP_892624.1 CDS CFF8240_1490 NC_008599.1 1471222 1471347 D hypothetical protein 1471222..1471347 Campylobacter fetus subsp. fetus 82-40 4538076 YP_892625.1 CDS CFF8240_1491 NC_008599.1 1471349 1471771 R similar to Tmden_0678; identified by match to protein family HMM PF02576; hypothetical protein complement(1471349..1471771) Campylobacter fetus subsp. fetus 82-40 4538522 YP_892626.1 CDS rbfA NC_008599.1 1471768 1472136 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(1471768..1472136) Campylobacter fetus subsp. fetus 82-40 4539263 YP_892627.1 CDS infB NC_008599.1 1472133 1474649 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(1472133..1474649) Campylobacter fetus subsp. fetus 82-40 4539158 YP_892628.1 CDS CFF8240_1494 NC_008599.1 1474636 1474851 R hypothetical protein complement(1474636..1474851) Campylobacter fetus subsp. fetus 82-40 4538942 YP_892629.1 CDS thrB NC_008599.1 1474903 1475784 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(1474903..1475784) Campylobacter fetus subsp. fetus 82-40 4538704 YP_892630.1 CDS CFF8240_1496 NC_008599.1 1475793 1476197 R hypothetical protein complement(1475793..1476197) Campylobacter fetus subsp. fetus 82-40 4538732 YP_892631.1 CDS lpxC NC_008599.1 1476236 1477120 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(1476236..1477120) Campylobacter fetus subsp. fetus 82-40 4538793 YP_892632.1 CDS CFF8240_1498 NC_008599.1 1477193 1478095 R identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; hypothetical protein complement(1477193..1478095) Campylobacter fetus subsp. fetus 82-40 4539466 YP_892633.1 CDS CFF8240_1499 NC_008599.1 1478150 1479520 R identified by match to protein family HMM PF01551; peptidase M23B complement(1478150..1479520) Campylobacter fetus subsp. fetus 82-40 4539110 YP_892634.1 CDS CFF8240_1500 NC_008599.1 1479581 1480411 R catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase complement(1479581..1480411) Campylobacter fetus subsp. fetus 82-40 4538376 YP_892635.1 CDS CFF8240_1501 NC_008599.1 1480584 1482857 D identified by match to protein family HMM PF01103; match to protein family HMM PF07244; OMP85 family outer membrane protein 1480584..1482857 Campylobacter fetus subsp. fetus 82-40 4538010 YP_892636.1 CDS CFF8240_1502 NC_008599.1 1482885 1483550 R identified by match to protein family HMM PF03473; mosc domain-containing protein complement(1482885..1483550) Campylobacter fetus subsp. fetus 82-40 4538754 YP_892637.1 CDS sppA NC_008599.1 1483551 1484414 R identified by match to protein family HMM PF01343; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 36K type complement(1483551..1484414) Campylobacter fetus subsp. fetus 82-40 4539262 YP_892638.1 CDS CFF8240_1504 NC_008599.1 1484402 1485622 R Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; chlorohydrolase complement(1484402..1485622) Campylobacter fetus subsp. fetus 82-40 4538426 YP_892639.1 CDS aroQ NC_008599.1 1485711 1486190 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1485711..1486190 Campylobacter fetus subsp. fetus 82-40 4538735 YP_892640.1 CDS CFF8240_1506 NC_008599.1 1486183 1487205 D identified by match to protein family HMM PF00557; Xaa-Pro peptidase 1486183..1487205 Campylobacter fetus subsp. fetus 82-40 4537770 YP_892641.1 CDS folK NC_008599.1 1487209 1487700 D identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1487209..1487700 Campylobacter fetus subsp. fetus 82-40 4538956 YP_892642.1 CDS flhF NC_008599.1 1487700 1489007 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1487700..1489007 Campylobacter fetus subsp. fetus 82-40 4538784 YP_892643.1 CDS CFF8240_1509 NC_008599.1 1488991 1489854 D identified by match to protein family HMM PF01656; ParaA family ATPase 1488991..1489854 Campylobacter fetus subsp. fetus 82-40 4538701 YP_892644.1 CDS CFF8240_1510 NC_008599.1 1489868 1490218 D hypothetical protein 1489868..1490218 Campylobacter fetus subsp. fetus 82-40 4538476 YP_892645.1 CDS fliA NC_008599.1 1490190 1490894 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 1490190..1490894 Campylobacter fetus subsp. fetus 82-40 4539065 YP_892646.1 CDS fliM NC_008599.1 1490894 1491985 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1490894..1491985 Campylobacter fetus subsp. fetus 82-40 4538369 YP_892647.1 CDS CFF8240_1513 NC_008599.1 1491978 1492808 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliY 1491978..1492808 Campylobacter fetus subsp. fetus 82-40 4537859 YP_892648.1 CDS CFF8240_1514 NC_008599.1 1492881 1493633 R identified by match to protein family HMM PF01171; match to protein family HMM PF06508; PP-loop family protein complement(1492881..1493633) Campylobacter fetus subsp. fetus 82-40 4537949 YP_892649.1 CDS mtnN NC_008599.1 1493630 1494316 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(1493630..1494316) Campylobacter fetus subsp. fetus 82-40 4538387 YP_892650.1 CDS fabD NC_008599.1 1494313 1495230 R identified by match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase complement(1494313..1495230) Campylobacter fetus subsp. fetus 82-40 4539395 YP_892651.1 CDS CFF8240_1517 NC_008599.1 1495239 1495811 R identified by match to protein family HMM PF00254; fkbp-type peptidyl-prolyl cis-trans isomerase slyd complement(1495239..1495811) Campylobacter fetus subsp. fetus 82-40 4538051 YP_892652.1 CDS CFF8240_1518 NC_008599.1 1495832 1496713 R identified by match to protein family HMM PF07719; hypothetical protein complement(1495832..1496713) Campylobacter fetus subsp. fetus 82-40 4538629 YP_892653.1 CDS CFF8240_1519 NC_008599.1 1496717 1497238 R identified by match to protein family HMM PF00691; Omp18 complement(1496717..1497238) Campylobacter fetus subsp. fetus 82-40 4538294 YP_892654.1 CDS tolB NC_008599.1 1497325 1498590 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(1497325..1498590) Campylobacter fetus subsp. fetus 82-40 4538319 YP_892655.1 CDS CFF8240_1521 NC_008599.1 1498587 1499399 R periplasmic protein complement(1498587..1499399) Campylobacter fetus subsp. fetus 82-40 4539338 YP_892656.1 CDS CFF8240_1522 NC_008599.1 1499401 1499793 R identified by match to protein family HMM PF02472; ExbD\TolR family transport protein complement(1499401..1499793) Campylobacter fetus subsp. fetus 82-40 4538691 YP_892657.1 CDS CFF8240_1523 NC_008599.1 1499780 1500379 R identified by match to protein family HMM PF01618; ExbB\TolQ family transport protein complement(1499780..1500379) Campylobacter fetus subsp. fetus 82-40 4538773 YP_892658.1 CDS atpC NC_008599.1 1500380 1500769 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(1500380..1500769) Campylobacter fetus subsp. fetus 82-40 4539369 YP_892659.1 CDS atpD NC_008599.1 1500787 1502184 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(1500787..1502184) Campylobacter fetus subsp. fetus 82-40 4539191 YP_892660.1 CDS atpG NC_008599.1 1502202 1503089 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(1502202..1503089) Campylobacter fetus subsp. fetus 82-40 4538391 YP_892661.1 CDS atpA NC_008599.1 1503099 1504616 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(1503099..1504616) Campylobacter fetus subsp. fetus 82-40 4537968 YP_892662.1 CDS atpH NC_008599.1 1504631 1505161 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(1504631..1505161) Campylobacter fetus subsp. fetus 82-40 4537993 YP_892663.1 CDS CFF8240_1529 NC_008599.1 1505161 1505679 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(1505161..1505679) Campylobacter fetus subsp. fetus 82-40 4539121 YP_892664.1 CDS CFF8240_1530 NC_008599.1 1505689 1506111 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' complement(1505689..1506111) Campylobacter fetus subsp. fetus 82-40 4539404 YP_892665.1 CDS CFF8240_1531 NC_008599.1 1506185 1507030 R identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; stage 0 sporulation protein J complement(1506185..1507030) Campylobacter fetus subsp. fetus 82-40 4538576 YP_892666.1 CDS soj NC_008599.1 1507033 1507815 R identified by match to protein family HMM PF01656; SpoOJ regulator protein complement(1507033..1507815) Campylobacter fetus subsp. fetus 82-40 4539047 YP_892667.1 CDS CFF8240_1533 NC_008599.1 1507812 1508447 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase complement(1507812..1508447) Campylobacter fetus subsp. fetus 82-40 4539425 YP_892668.1 CDS fmt NC_008599.1 1508428 1509342 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(1508428..1509342) Campylobacter fetus subsp. fetus 82-40 4537961 YP_892669.1 CDS proB NC_008599.1 1509339 1510103 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(1509339..1510103) Campylobacter fetus subsp. fetus 82-40 4539103 YP_892670.1 CDS obgE NC_008599.1 1510269 1511303 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(1510269..1511303) Campylobacter fetus subsp. fetus 82-40 4537761 YP_892671.1 CDS rpmA NC_008599.1 1511389 1511646 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1511389..1511646) Campylobacter fetus subsp. fetus 82-40 4538256 YP_892672.1 CDS rplU NC_008599.1 1511657 1511965 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(1511657..1511965) Campylobacter fetus subsp. fetus 82-40 4539076 YP_892673.1 CDS CFF8240_1539 NC_008599.1 1512174 1513208 R identified by match to protein family HMM PF03150; cytochrome c551 peroxidase complement(1512174..1513208) Campylobacter fetus subsp. fetus 82-40 4538481 YP_892674.1 CDS CFF8240_1540 NC_008599.1 1513617 1514171 R identified by match to protein family HMM PF00037; formate dehydrogenase iron-sulfur subunit complement(1513617..1514171) Campylobacter fetus subsp. fetus 82-40 4539400 YP_892675.1 CDS CFF8240_1541 NC_008599.1 1514186 1516558 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; formate dehydrogenase complement(1514186..1516558) Campylobacter fetus subsp. fetus 82-40 4538575 YP_892676.1 CDS CFF8240_1543 NC_008599.1 1517154 1517357 R identified by match to protein family HMM TIGR01409; hypothetical protein complement(1517154..1517357) Campylobacter fetus subsp. fetus 82-40 4538191 YP_892677.1 CDS CFF8240_1544 NC_008599.1 1517487 1518164 R hypothetical protein complement(1517487..1518164) Campylobacter fetus subsp. fetus 82-40 4539533 YP_892678.1 CDS CFF8240_1545 NC_008599.1 1518161 1519822 R identified by match to protein family HMM PF00037; iron-sulfur cluster-binding domain-containing protein complement(1518161..1519822) Campylobacter fetus subsp. fetus 82-40 4537974 YP_892679.1 CDS selA NC_008599.1 1519954 1521282 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 1519954..1521282 Campylobacter fetus subsp. fetus 82-40 4538723 YP_892680.1 CDS selB NC_008599.1 1521275 1523080 D identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific translation elongation factor 1521275..1523080 Campylobacter fetus subsp. fetus 82-40 4538331 YP_892681.1 CDS CFF8240_1548 NC_008599.1 1523126 1523866 D hypothetical protein 1523126..1523866 Campylobacter fetus subsp. fetus 82-40 4539296 YP_892682.1 CDS CFF8240_1549 NC_008599.1 1523936 1524613 D identified by match to protein family HMM PF02348; acylneuraminate cytidylyltransferase 1523936..1524613 Campylobacter fetus subsp. fetus 82-40 4539494 YP_892683.1 CDS CFF8240_1550 NC_008599.1 1524636 1525379 D identified by match to protein family HMM PF01261; AP endonuclease 1524636..1525379 Campylobacter fetus subsp. fetus 82-40 4539453 YP_892684.1 CDS CFF8240_1551 NC_008599.1 1525376 1525585 D phosphoribosylglycinamide formyltransferase 2 1525376..1525585 Campylobacter fetus subsp. fetus 82-40 4539229 YP_892685.1 CDS CFF8240_1552 NC_008599.1 1525615 1525764 D hypothetical protein 1525615..1525764 Campylobacter fetus subsp. fetus 82-40 4538380 YP_892686.1 CDS CFF8240_1553 NC_008599.1 1525775 1526578 D phosphoribosylglycinamide synthetase, ATP-grasp 1525775..1526578 Campylobacter fetus subsp. fetus 82-40 4538247 YP_892687.1 CDS CFF8240_1554 NC_008599.1 1526575 1527258 D hypothetical protein 1526575..1527258 Campylobacter fetus subsp. fetus 82-40 4539340 YP_892688.1 CDS CFF8240_1555 NC_008599.1 1527268 1527954 D hypothetical protein 1527268..1527954 Campylobacter fetus subsp. fetus 82-40 4539407 YP_892689.1 CDS CFF8240_1556 NC_008599.1 1527917 1528939 D identified by match to protein family HMM PF01354; match to protein family HMM PF03102; sialic acid synthase 1527917..1528939 Campylobacter fetus subsp. fetus 82-40 4537948 YP_892690.1 CDS CFF8240_1557 NC_008599.1 1528994 1530358 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1528994..1530358) Campylobacter fetus subsp. fetus 82-40 4538017 YP_892691.1 CDS CFF8240_1558 NC_008599.1 1530466 1531149 R identified by match to protein family HMM PF02621; hypothetical protein complement(1530466..1531149) Campylobacter fetus subsp. fetus 82-40 4537869 YP_892692.1 CDS upp NC_008599.1 1531157 1531786 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(1531157..1531786) Campylobacter fetus subsp. fetus 82-40 4537786 YP_892693.1 CDS CFF8240_1560 NC_008599.1 1532184 1533431 R identified by match to protein family HMM PF00390; match to protein family HMM PF03949; NADP-dependent malic enzyme complement(1532184..1533431) Campylobacter fetus subsp. fetus 82-40 4539051 YP_892694.1 CDS CFF8240_1561 NC_008599.1 1533681 1534112 R identified by match to protein family HMM PF01047; transcriptional regulator complement(1533681..1534112) Campylobacter fetus subsp. fetus 82-40 4539426 YP_892695.1 CDS gltX NC_008599.1 1534247 1535629 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(1534247..1535629) Campylobacter fetus subsp. fetus 82-40 4539333 YP_892696.1 CDS CFF8240_1563 NC_008599.1 1535703 1536530 D hypothetical protein 1535703..1536530 Campylobacter fetus subsp. fetus 82-40 4538562 YP_892697.1 CDS accC NC_008599.1 1536569 1537906 R biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase complement(1536569..1537906) Campylobacter fetus subsp. fetus 82-40 4538118 YP_892698.1 CDS accB NC_008599.1 1537903 1538355 R identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(1537903..1538355) Campylobacter fetus subsp. fetus 82-40 4538475 YP_892699.1 CDS dcd NC_008599.1 1538651 1539211 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1538651..1539211 Campylobacter fetus subsp. fetus 82-40 4538902 YP_892700.1 CDS CFF8240_1567 NC_008599.1 1539222 1540340 D identified by match to protein family HMM PF01041; match to protein family HMM PF01212; spore coat polysaccharide biosynthesis protein SpsC 1539222..1540340 Campylobacter fetus subsp. fetus 82-40 4538520 YP_892701.1 CDS CFF8240_1568 NC_008599.1 1540404 1541666 R identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur cluster-binding domain-containing protein complement(1540404..1541666) Campylobacter fetus subsp. fetus 82-40 4538684 YP_892702.1 CDS CFF8240_1569 NC_008599.1 1541667 1542413 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(1541667..1542413) Campylobacter fetus subsp. fetus 82-40 4538637 YP_892703.1 CDS CFF8240_1570 NC_008599.1 1542410 1543234 R hypothetical protein complement(1542410..1543234) Campylobacter fetus subsp. fetus 82-40 4538115 YP_892704.1 CDS hemN NC_008599.1 1543255 1544616 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1543255..1544616) Campylobacter fetus subsp. fetus 82-40 4538989 YP_892705.1 CDS CFF8240_1572 NC_008599.1 1544616 1545053 R hypothetical protein complement(1544616..1545053) Campylobacter fetus subsp. fetus 82-40 4538907 YP_892706.1 CDS argF NC_008599.1 1545046 1545975 R identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658; ornithine carbamoyltransferase complement(1545046..1545975) Campylobacter fetus subsp. fetus 82-40 4538515 YP_892707.1 CDS hemB NC_008599.1 1545984 1546961 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1545984..1546961) Campylobacter fetus subsp. fetus 82-40 4538172 YP_892708.1 CDS ribA NC_008599.1 1547073 1547660 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1547073..1547660 Campylobacter fetus subsp. fetus 82-40 4538031 YP_892709.1 CDS gidB NC_008599.1 1547644 1548192 D identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138; methyltransferase GidB 1547644..1548192 Campylobacter fetus subsp. fetus 82-40 4538769 YP_892710.1 CDS CFF8240_1577 NC_008599.1 1548186 1548380 D hypothetical protein 1548186..1548380 Campylobacter fetus subsp. fetus 82-40 4538677 YP_892711.1 CDS CFF8240_1578 NC_008599.1 1548377 1548691 D hypothetical protein 1548377..1548691 Campylobacter fetus subsp. fetus 82-40 4538054 YP_892712.1 CDS CFF8240_1579 NC_008599.1 1548688 1549557 D identified by match to protein family HMM PF01435; M48 family peptidase 1548688..1549557 Campylobacter fetus subsp. fetus 82-40 4538338 YP_892713.1 CDS alr NC_008599.1 1549567 1550580 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(1549567..1550580) Campylobacter fetus subsp. fetus 82-40 4538949 YP_892714.1 CDS CFF8240_1581 NC_008599.1 1550573 1550833 R hypothetical protein complement(1550573..1550833) Campylobacter fetus subsp. fetus 82-40 4538930 YP_892715.1 CDS CFF8240_1582 NC_008599.1 1550846 1551814 R hypothetical protein complement(1550846..1551814) Campylobacter fetus subsp. fetus 82-40 4539274 YP_892716.1 CDS CFF8240_1583 NC_008599.1 1551940 1552386 D identified by match to protein family HMM PF04314; hypothetical protein 1551940..1552386 Campylobacter fetus subsp. fetus 82-40 4538961 YP_892717.1 CDS CFF8240_1584 NC_008599.1 1552455 1554677 D hypothetical protein 1552455..1554677 Campylobacter fetus subsp. fetus 82-40 4539482 YP_892718.1 CDS CFF8240_1585 NC_008599.1 1554665 1555597 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1554665..1555597 Campylobacter fetus subsp. fetus 82-40 4538836 YP_892719.1 CDS CFF8240_1586 NC_008599.1 1555594 1556664 D identified by match to protein family HMM PF04055; radical SAM family protein 1555594..1556664 Campylobacter fetus subsp. fetus 82-40 4538787 YP_892720.1 CDS CFF8240_1587 NC_008599.1 1556673 1557431 D identified by match to protein family HMM PF00456; transketolase 1556673..1557431 Campylobacter fetus subsp. fetus 82-40 4538980 YP_892721.1 CDS CFF8240_1588 NC_008599.1 1557428 1558303 D identified by match to protein family HMM TIGR01444; methyltransferase, FkbM family protein 1557428..1558303 Campylobacter fetus subsp. fetus 82-40 4539113 YP_892722.1 CDS CFF8240_1589 NC_008599.1 1558305 1559171 D identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase 1558305..1559171 Campylobacter fetus subsp. fetus 82-40 4539465 YP_892723.1 CDS CFF8240_1590 NC_008599.1 1559168 1559827 D methyltransferase 1559168..1559827 Campylobacter fetus subsp. fetus 82-40 4538401 YP_892724.1 CDS CFF8240_1591 NC_008599.1 1559834 1560538 D identified by match to protein family HMM PF01596; caffeoyl-CoA O-methyltransferase 1559834..1560538 Campylobacter fetus subsp. fetus 82-40 4538727 YP_892725.1 CDS CFF8240_1592 NC_008599.1 1560538 1561602 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1560538..1561602 Campylobacter fetus subsp. fetus 82-40 4538690 YP_892726.1 CDS CFF8240_1593 NC_008599.1 1561599 1562663 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1561599..1562663 Campylobacter fetus subsp. fetus 82-40 4537951 YP_892727.1 CDS CFF8240_1594 NC_008599.1 1562663 1563409 D hypothetical protein 1562663..1563409 Campylobacter fetus subsp. fetus 82-40 4538545 YP_892728.1 CDS CFF8240_1595 NC_008599.1 1563438 1563791 D hypothetical protein 1563438..1563791 Campylobacter fetus subsp. fetus 82-40 4538234 YP_892729.1 CDS CFF8240_1596 NC_008599.1 1563781 1564062 D UDP-glucose 4-epimerase, putative 1563781..1564062 Campylobacter fetus subsp. fetus 82-40 4538147 YP_892730.1 CDS CFF8240_1598 NC_008599.1 1564731 1565006 D hypothetical protein 1564731..1565006 Campylobacter fetus subsp. fetus 82-40 4539378 YP_892731.1 CDS CFF8240_1599 NC_008599.1 1565000 1566250 D D-mycarose 3-C-methyltransferase 1565000..1566250 Campylobacter fetus subsp. fetus 82-40 4537789 YP_892732.1 CDS CFF8240_1600 NC_008599.1 1566241 1566927 D ketoreductase 1566241..1566927 Campylobacter fetus subsp. fetus 82-40 4538215 YP_892733.1 CDS CFF8240_1601 NC_008599.1 1566931 1567995 D identified by match to protein family HMM PF04055; heme biosynthesis protein 1566931..1567995 Campylobacter fetus subsp. fetus 82-40 4538859 YP_892734.1 CDS CFF8240_1602 NC_008599.1 1567996 1569105 D identified by match to protein family HMM PF03275; UDP-galactopyranose mutase 1567996..1569105 Campylobacter fetus subsp. fetus 82-40 4539120 YP_892735.1 CDS CFF8240_1603 NC_008599.1 1569120 1569872 D methyltransferase 1569120..1569872 Campylobacter fetus subsp. fetus 82-40 4537899 YP_892736.1 CDS CFF8240_1604 NC_008599.1 1569884 1570513 D hypothetical protein 1569884..1570513 Campylobacter fetus subsp. fetus 82-40 4538058 YP_892737.1 CDS CFF8240_1605 NC_008599.1 1570546 1571241 D hypothetical protein 1570546..1571241 Campylobacter fetus subsp. fetus 82-40 4539493 YP_892738.1 CDS CFF8240_1607 NC_008599.1 1572680 1573579 D putative ADP-heptose--lipopolysaccharide heptosyltransferase II 1572680..1573579 Campylobacter fetus subsp. fetus 82-40 4539166 YP_892739.1 CDS CFF8240_1608 NC_008599.1 1573793 1574800 D hypothetical protein 1573793..1574800 Campylobacter fetus subsp. fetus 82-40 4538743 YP_892740.1 CDS CFF8240_1609 NC_008599.1 1574797 1575267 D 3-demethylubiquinone-9 3-methyltransferase 1574797..1575267 Campylobacter fetus subsp. fetus 82-40 4538965 YP_892741.1 CDS asnB NC_008599.1 1575654 1577456 D identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthase 1575654..1577456 Campylobacter fetus subsp. fetus 82-40 4538049 YP_892742.1 CDS CFF8240_1612 NC_008599.1 1577453 1578559 D identified by match to protein family HMM PF00534; glycosyl transferase, group 1 1577453..1578559 Campylobacter fetus subsp. fetus 82-40 4537964 YP_892743.1 CDS CFF8240_1614 NC_008599.1 1579802 1580011 D hypothetical protein 1579802..1580011 Campylobacter fetus subsp. fetus 82-40 4538760 YP_892744.1 CDS CFF8240_1615 NC_008599.1 1580011 1580736 D hypothetical protein 1580011..1580736 Campylobacter fetus subsp. fetus 82-40 4539399 YP_892745.1 CDS CFF8240_1616 NC_008599.1 1580733 1581809 D identified by match to protein family HMM PF00534; group 1 glycosyl transferase 1580733..1581809 Campylobacter fetus subsp. fetus 82-40 4538524 YP_892746.1 CDS asnB NC_008599.1 1581797 1583548 D identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthase 1581797..1583548 Campylobacter fetus subsp. fetus 82-40 4539387 YP_892747.1 CDS CFF8240_1618 NC_008599.1 1583545 1584615 D identified by match to protein family HMM PF04007; hypothetical protein 1583545..1584615 Campylobacter fetus subsp. fetus 82-40 4538101 YP_892748.1 CDS CFF8240_1619 NC_008599.1 1584602 1585255 D hypothetical protein 1584602..1585255 Campylobacter fetus subsp. fetus 82-40 4538160 YP_892749.1 CDS CFF8240_1620 NC_008599.1 1585246 1586634 D hypothetical protein 1585246..1586634 Campylobacter fetus subsp. fetus 82-40 4538106 YP_892750.1 CDS CFF8240_1621 NC_008599.1 1586627 1588072 D hypothetical protein 1586627..1588072 Campylobacter fetus subsp. fetus 82-40 4538878 YP_892751.1 CDS CFF8240_1622 NC_008599.1 1588069 1589466 D hypothetical protein 1588069..1589466 Campylobacter fetus subsp. fetus 82-40 4539271 YP_892752.1 CDS CFF8240_1623 NC_008599.1 1589477 1589626 D hypothetical protein 1589477..1589626 Campylobacter fetus subsp. fetus 82-40 4538679 YP_892753.1 CDS CFF8240_1624 NC_008599.1 1589623 1591041 D hypothetical protein 1589623..1591041 Campylobacter fetus subsp. fetus 82-40 4539055 YP_892754.1 CDS CFF8240_1625 NC_008599.1 1591130 1591297 D hypothetical protein 1591130..1591297 Campylobacter fetus subsp. fetus 82-40 4538976 YP_892755.1 CDS CFF8240_1626 NC_008599.1 1591272 1592492 D hypothetical protein 1591272..1592492 Campylobacter fetus subsp. fetus 82-40 4537901 YP_892756.1 CDS CFF8240_1627 NC_008599.1 1592519 1593031 D converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 1592519..1593031 Campylobacter fetus subsp. fetus 82-40 4539020 YP_892757.1 CDS CFF8240_1629 NC_008599.1 1593940 1594716 D hypothetical protein 1593940..1594716 Campylobacter fetus subsp. fetus 82-40 4539162 YP_892758.1 CDS CFF8240_1630 NC_008599.1 1594713 1596977 D hypothetical protein 1594713..1596977 Campylobacter fetus subsp. fetus 82-40 4539468 YP_892759.1 CDS CFF8240_1631 NC_008599.1 1596974 1597558 D identified by match to protein family HMM PF00117; glutamine amidotransferase 1596974..1597558 Campylobacter fetus subsp. fetus 82-40 4538398 YP_892760.1 CDS CFF8240_1632 NC_008599.1 1597555 1598298 D identified by match to protein family HMM PF00483; sugar metabolism cluster protein 1597555..1598298 Campylobacter fetus subsp. fetus 82-40 4538510 YP_892761.1 CDS CFF8240_1633 NC_008599.1 1598339 1599334 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; FlmA protein 1598339..1599334 Campylobacter fetus subsp. fetus 82-40 4539280 YP_892762.1 CDS CFF8240_1634 NC_008599.1 1599369 1599818 D identified by match to protein family HMM PF00583; acetyltransferase 1599369..1599818 Campylobacter fetus subsp. fetus 82-40 4538061 YP_892763.1 CDS CFF8240_1635 NC_008599.1 1600015 1601574 R FlaB; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin B complement(1600015..1601574) Campylobacter fetus subsp. fetus 82-40 4538388 YP_892764.1 CDS CFF8240_1636 NC_008599.1 1601773 1603329 R FlaB; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin B complement(1601773..1603329) Campylobacter fetus subsp. fetus 82-40 4538450 YP_892765.1 CDS CFF8240_1637 NC_008599.1 1603527 1605092 R methyltransferase complement(1603527..1605092) Campylobacter fetus subsp. fetus 82-40 4538310 YP_892766.1 CDS CFF8240_1638 NC_008599.1 1605106 1607091 R identified by match to protein family HMM PF01973; motility accessory factor complement(1605106..1607091) Campylobacter fetus subsp. fetus 82-40 4537861 YP_892767.1 CDS CFF8240_1639 NC_008599.1 1607182 1607856 R hypothetical protein complement(1607182..1607856) Campylobacter fetus subsp. fetus 82-40 4538437 YP_892768.1 CDS CFF8240_1640 NC_008599.1 1608004 1609014 D identified by match to protein family HMM PF01594; transporter 1608004..1609014 Campylobacter fetus subsp. fetus 82-40 4539294 YP_892769.1 CDS CFF8240_1641 NC_008599.1 1609015 1610343 D identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; cation transport protein 1609015..1610343 Campylobacter fetus subsp. fetus 82-40 4539484 YP_892770.1 CDS CFF8240_1642 NC_008599.1 1610340 1610990 D identified by match to protein family HMM PF02254; hypothetical protein 1610340..1610990 Campylobacter fetus subsp. fetus 82-40 4539096 YP_892771.1 CDS aspA NC_008599.1 1611243 1612667 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 1611243..1612667 Campylobacter fetus subsp. fetus 82-40 4539061 YP_892772.1 CDS CFF8240_1644 NC_008599.1 1612809 1614146 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 1612809..1614146 Campylobacter fetus subsp. fetus 82-40 4538834 YP_892773.1 CDS CFF8240_1645 NC_008599.1 1614490 1616127 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1614490..1616127 Campylobacter fetus subsp. fetus 82-40 4538042 YP_892774.1 CDS CFF8240_1646 NC_008599.1 1616198 1617697 R identified by match to protein family HMM PF02600; DsbB family disulfide bond formation protein complement(1616198..1617697) Campylobacter fetus subsp. fetus 82-40 4538501 YP_892775.1 CDS CFF8240_1647 NC_008599.1 1617708 1617872 R hypothetical protein complement(1617708..1617872) Campylobacter fetus subsp. fetus 82-40 4537797 YP_892776.1 CDS CFF8240_1648 NC_008599.1 1618046 1620136 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; ferric receptor CfrA complement(1618046..1620136) Campylobacter fetus subsp. fetus 82-40 4539215 YP_892777.1 CDS exbB NC_008599.1 1620353 1620790 D identified by match to protein family HMM PF01618; match to protein family HMM TIGR02805; TonB-system energizer ExbB 1620353..1620790 Campylobacter fetus subsp. fetus 82-40 4538374 YP_892778.1 CDS expD NC_008599.1 1620774 1621163 D identified by match to protein family HMM PF02472; match to protein family HMM TIGR02804; TonB system transport protein ExbD 1620774..1621163 Campylobacter fetus subsp. fetus 82-40 4538009 YP_892779.1 CDS CFF8240_1651 NC_008599.1 1621160 1621885 D identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; protein TonB 1621160..1621885 Campylobacter fetus subsp. fetus 82-40 4538150 YP_892780.1 CDS CFF8240_1652 NC_008599.1 1622020 1623555 D identified by match to protein family HMM PF00496; peptide ABC transporter periplasmic peptide-binding protein 1622020..1623555 Campylobacter fetus subsp. fetus 82-40 4538687 YP_892781.1 CDS CFF8240_1653 NC_008599.1 1623555 1624505 D identified by match to protein family HMM PF00528; peptide ABC transporter, permease protein 1623555..1624505 Campylobacter fetus subsp. fetus 82-40 4538940 YP_892782.1 CDS CFF8240_1654 NC_008599.1 1624508 1625290 D identified by match to protein family HMM PF00528; peptide ABC transporter, permease protein 1624508..1625290 Campylobacter fetus subsp. fetus 82-40 4538833 YP_892783.1 CDS CFF8240_1657 NC_008599.1 1625894 1626553 D identified by match to protein family HMM PF00005; nickel import ATP-binding protein NikE 1625894..1626553 Campylobacter fetus subsp. fetus 82-40 4538490 YP_892784.1 CDS CFF8240_1656 NC_008599.1 1626546 1627811 R identified by match to protein family HMM PF02040; match to protein family HMM PF03600; arsenical pump membrane protein complement(1626546..1627811) Campylobacter fetus subsp. fetus 82-40 4539190 YP_892785.1 CDS CFF8240_1658 NC_008599.1 1627934 1628548 D hypothetical protein 1627934..1628548 Campylobacter fetus subsp. fetus 82-40 4538068 YP_892786.1 CDS CFF8240_1659 NC_008599.1 1628545 1629180 D hypothetical protein 1628545..1629180 Campylobacter fetus subsp. fetus 82-40 4538667 YP_892787.1 CDS CFF8240_1660 NC_008599.1 1629243 1629530 D hypothetical protein 1629243..1629530 Campylobacter fetus subsp. fetus 82-40 4537776 YP_892788.1 CDS CFF8240_1661 NC_008599.1 1629548 1630723 D identified by match to protein family HMM PF03738; glutathionylspermidine synthase 1629548..1630723 Campylobacter fetus subsp. fetus 82-40 4538968 YP_892789.1 CDS CFF8240_1662 NC_008599.1 1630723 1631265 D identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; phenylacrylic acid decarboxylase 1630723..1631265 Campylobacter fetus subsp. fetus 82-40 4539046 YP_892790.1 CDS hprA NC_008599.1 1631378 1632310 D Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 1631378..1632310 Campylobacter fetus subsp. fetus 82-40 4538609 YP_892791.1 CDS CFF8240_1664 NC_008599.1 1632313 1632810 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 1632313..1632810 Campylobacter fetus subsp. fetus 82-40 4538951 YP_892792.1 CDS CFF8240_1665 NC_008599.1 1632820 1633491 D disulfide isomerase 1632820..1633491 Campylobacter fetus subsp. fetus 82-40 4539467 YP_892793.1 CDS CFF8240_1666 NC_008599.1 1633579 1634886 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1633579..1634886 Campylobacter fetus subsp. fetus 82-40 4538428 YP_892794.1 CDS CFF8240_1667 NC_008599.1 1635042 1636751 R identified by match to protein family HMM PF00004; AAA ATPase complement(1635042..1636751) Campylobacter fetus subsp. fetus 82-40 4537992 YP_892795.1 CDS CFF8240_1668 NC_008599.1 1636748 1638292 R activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1636748..1638292) Campylobacter fetus subsp. fetus 82-40 4538712 YP_892796.1 CDS CFF8240_1669 NC_008599.1 1638295 1639578 R identified by match to protein family HMM PF03349; membrane protein complement(1638295..1639578) Campylobacter fetus subsp. fetus 82-40 4539025 YP_892797.1 CDS CFF8240_1670 NC_008599.1 1639578 1640426 R Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV complement(1639578..1640426) Campylobacter fetus subsp. fetus 82-40 4538532 YP_892798.1 CDS CFF8240_1671 NC_008599.1 1640423 1640899 R hypothetical protein complement(1640423..1640899) Campylobacter fetus subsp. fetus 82-40 4539129 YP_892799.1 CDS CFF8240_1673 NC_008599.1 1641383 1641964 D hypothetical protein 1641383..1641964 Campylobacter fetus subsp. fetus 82-40 4538912 YP_892800.1 CDS CFF8240_1674 NC_008599.1 1642037 1643401 D hypothetical protein 1642037..1643401 Campylobacter fetus subsp. fetus 82-40 4538181 YP_892801.1 CDS CFF8240_1676 NC_008599.1 1643913 1645268 D hypothetical protein 1643913..1645268 Campylobacter fetus subsp. fetus 82-40 4539119 YP_892802.1 CDS CFF8240_1677 NC_008599.1 1645258 1646610 D identified by match to protein family HMM PF03787; CRISPR-associated RAMP protein 1645258..1646610 Campylobacter fetus subsp. fetus 82-40 4537831 YP_892803.1 CDS CFF8240_1678 NC_008599.1 1646607 1647044 D hypothetical protein 1646607..1647044 Campylobacter fetus subsp. fetus 82-40 4538573 YP_892804.1 CDS CFF8240_1679 NC_008599.1 1647041 1648546 D hypothetical protein 1647041..1648546 Campylobacter fetus subsp. fetus 82-40 4538825 YP_892805.1 CDS CFF8240_1680 NC_008599.1 1648566 1648688 D hypothetical protein 1648566..1648688 Campylobacter fetus subsp. fetus 82-40 4538832 YP_892806.1 CDS CFF8240_1686 NC_008599.1 1649481 1650200 R identified by match to protein family HMM PF03741; TerC protein complement(1649481..1650200) Campylobacter fetus subsp. fetus 82-40 4537903 YP_892807.1 CDS purN NC_008599.1 1650193 1650780 R identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase complement(1650193..1650780) Campylobacter fetus subsp. fetus 82-40 4538430 YP_892808.1 CDS CFF8240_1688 NC_008599.1 1650771 1652156 R similar to N-terminus; identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; hypothetical protein complement(1650771..1652156) Campylobacter fetus subsp. fetus 82-40 4538555 YP_892809.1 CDS CFF8240_1689 NC_008599.1 1652153 1653667 R identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368; putative Mg chelatase-like protein complement(1652153..1653667) Campylobacter fetus subsp. fetus 82-40 4537925 YP_892810.1 CDS def NC_008599.1 1653664 1654182 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1653664..1654182) Campylobacter fetus subsp. fetus 82-40 4539383 YP_892811.1 CDS CFF8240_1691 NC_008599.1 1654183 1655265 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(1654183..1655265) Campylobacter fetus subsp. fetus 82-40 4539438 YP_892812.1 CDS clpP NC_008599.1 1655277 1655867 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(1655277..1655867) Campylobacter fetus subsp. fetus 82-40 4539087 YP_892813.1 CDS tig NC_008599.1 1655867 1657174 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(1655867..1657174) Campylobacter fetus subsp. fetus 82-40 4538842 YP_892814.1 CDS folE NC_008599.1 1657308 1657895 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1657308..1657895 Campylobacter fetus subsp. fetus 82-40 4538423 YP_892815.1 CDS fliI NC_008599.1 1657892 1659196 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1657892..1659196 Campylobacter fetus subsp. fetus 82-40 4539406 YP_892816.1 CDS CFF8240_1696 NC_008599.1 1659393 1660583 D identified by match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase 1659393..1660583 Campylobacter fetus subsp. fetus 82-40 4538879 YP_892817.1 CDS CFF8240_1697 NC_008599.1 1660605 1661606 D identified by match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; nitrogen fixation protein NifU 1660605..1661606 Campylobacter fetus subsp. fetus 82-40 4537965 YP_892818.1 CDS CFF8240_1698 NC_008599.1 1661918 1663879 D identified by match to protein family HMM PF00015; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1661918..1663879 Campylobacter fetus subsp. fetus 82-40 4539422 YP_892819.1 CDS CFF8240_1699 NC_008599.1 1664041 1664592 D identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481; hemerythrin family non-heme iron protein 1664041..1664592 Campylobacter fetus subsp. fetus 82-40 4538971 YP_892820.1 CDS CFF8240_1700 NC_008599.1 1664600 1664977 R identified by match to protein family HMM PF05154; TM2 domain-containing protein complement(1664600..1664977) Campylobacter fetus subsp. fetus 82-40 4538892 YP_892821.1 CDS infC NC_008599.1 1665160 1665678 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(1665160..1665678) Campylobacter fetus subsp. fetus 82-40 4538116 YP_892822.1 CDS thrS NC_008599.1 1665675 1667528 R catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase complement(1665675..1667528) Campylobacter fetus subsp. fetus 82-40 4538350 YP_892823.1 CDS CFF8240_1703 NC_008599.1 1667781 1668428 R hypothetical protein complement(1667781..1668428) Campylobacter fetus subsp. fetus 82-40 4539165 YP_892824.1 CDS CFF8240_1704 NC_008599.1 1668888 1669019 D hypothetical protein 1668888..1669019 Campylobacter fetus subsp. fetus 82-40 4538863 YP_892825.1 CDS CFF8240_1705 NC_008599.1 1669870 1670145 R identified by match to protein family HMM PF05016; plasmid stabilization system protein complement(1669870..1670145) Campylobacter fetus subsp. fetus 82-40 4538130 YP_892826.1 CDS CFF8240_1706 NC_008599.1 1670139 1670381 R protein YdaT complement(1670139..1670381) Campylobacter fetus subsp. fetus 82-40 4537897 YP_892827.1 CDS CFF8240_1708 NC_008599.1 1671982 1672761 R hypothetical protein complement(1671982..1672761) Campylobacter fetus subsp. fetus 82-40 4539492 YP_892828.1 CDS CFF8240_1709 NC_008599.1 1672844 1672978 R hypothetical protein complement(1672844..1672978) Campylobacter fetus subsp. fetus 82-40 4537953 YP_892829.1 CDS CFF8240_1710 NC_008599.1 1673095 1673310 R hypothetical protein complement(1673095..1673310) Campylobacter fetus subsp. fetus 82-40 4539523 YP_892830.1 CDS CFF8240_1711 NC_008599.1 1673321 1674559 R identified by match to protein family HMM PF00589; phage integrase family site specific recombinase complement(1673321..1674559) Campylobacter fetus subsp. fetus 82-40 4539382 YP_892831.1 CDS CFF8240_1712 NC_008599.1 1674691 1674918 R hypothetical protein complement(1674691..1674918) Campylobacter fetus subsp. fetus 82-40 4538514 YP_892832.1 CDS CFF8240_1714 NC_008599.1 1675338 1675784 R identified by match to protein family HMM PF03653; transmembrane protein complement(1675338..1675784) Campylobacter fetus subsp. fetus 82-40 4538895 YP_892833.1 CDS CFF8240_1715 NC_008599.1 1675848 1676210 R identified by match to protein family HMM PF05154; hypothetical protein complement(1675848..1676210) Campylobacter fetus subsp. fetus 82-40 4539015 YP_892834.1 CDS lspA NC_008599.1 1676210 1676653 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(1676210..1676653) Campylobacter fetus subsp. fetus 82-40 4538538 YP_892835.1 CDS glmM NC_008599.1 1676646 1677986 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(1676646..1677986) Campylobacter fetus subsp. fetus 82-40 4538587 YP_892836.1 CDS rpsT NC_008599.1 1678191 1678457 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1678191..1678457 Campylobacter fetus subsp. fetus 82-40 4539194 YP_892837.1 CDS prfA NC_008599.1 1678469 1679536 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1678469..1679536 Campylobacter fetus subsp. fetus 82-40 4538623 YP_892838.1 CDS CFF8240_1720 NC_008599.1 1679562 1679912 D identified by match to protein family HMM PF04237; YyaQ 1679562..1679912 Campylobacter fetus subsp. fetus 82-40 4538699 YP_892839.1 CDS CFF8240_1721 NC_008599.1 1679913 1680416 R identified by match to protein family HMM PF00857; isochorismatase superfamily hydrolase complement(1679913..1680416) Campylobacter fetus subsp. fetus 82-40 4539164 YP_892840.1 CDS xth NC_008599.1 1680434 1681192 R identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III complement(1680434..1681192) Campylobacter fetus subsp. fetus 82-40 4539130 YP_892841.1 CDS CFF8240_1723 NC_008599.1 1681315 1682844 D identified by match to protein family HMM PF00884; match to protein family HMM PF08019; type III effector HopAH2-2 1681315..1682844 Campylobacter fetus subsp. fetus 82-40 4538974 YP_892842.1 CDS CFF8240_1724 NC_008599.1 1682841 1683203 D identified by match to protein family HMM PF01219; diacylglycerol kinase 1682841..1683203 Campylobacter fetus subsp. fetus 82-40 4539411 YP_892843.1 CDS CFF8240_1726 NC_008599.1 1683248 1683433 D response regulator receiver domain-containing protein 1683248..1683433 Campylobacter fetus subsp. fetus 82-40 4538975 YP_892844.1 CDS CFF8240_1725 NC_008599.1 1683411 1683956 R identified by match to protein family HMM PF02659; membrane protein complement(1683411..1683956) Campylobacter fetus subsp. fetus 82-40 4539250 YP_892845.1 CDS CFF8240_1728 NC_008599.1 1684044 1684952 D identified by match to protein family HMM PF00892; permeases of the drug/metabolite transporter 1684044..1684952 Campylobacter fetus subsp. fetus 82-40 4537764 YP_892846.1 CDS CFF8240_1727 NC_008599.1 1684949 1685776 R identified by match to protein family HMM PF00950; match to protein family HMM PF01032; cation ABC transporter permease complement(1684949..1685776) Campylobacter fetus subsp. fetus 82-40 4538894 YP_892847.1 CDS CFF8240_1729 NC_008599.1 1685773 1686528 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1685773..1686528) Campylobacter fetus subsp. fetus 82-40 4538631 YP_892848.1 CDS CFF8240_1730 NC_008599.1 1686525 1688066 R identified by match to protein family HMM PF03824; Ni2+-Co2+ transporter (NiCoT) family protein complement(1686525..1688066) Campylobacter fetus subsp. fetus 82-40 4538458 YP_892849.1 CDS CFF8240_1731 NC_008599.1 1688063 1689472 R identified by match to protein family HMM PF01297; periplasmic solute binding protein complement(1688063..1689472) Campylobacter fetus subsp. fetus 82-40 4538379 YP_892850.1 CDS CFF8240_1732 NC_008599.1 1689657 1690007 D zinc uptake regulation protein 1689657..1690007 Campylobacter fetus subsp. fetus 82-40 4539339 YP_892851.1 CDS CFF8240_1733 NC_008599.1 1689989 1690105 D hypothetical protein 1689989..1690105 Campylobacter fetus subsp. fetus 82-40 4539539 YP_892852.1 CDS CFF8240_1734 NC_008599.1 1690212 1691027 D identified by match to protein family HMM PF03150; cytochrome c551 peroxidase 1690212..1691027 Campylobacter fetus subsp. fetus 82-40 4537928 YP_892853.1 CDS CFF8240_1735 NC_008599.1 1691059 1693455 D identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; diguanylate cyclase/phosphodiesterase 1691059..1693455 Campylobacter fetus subsp. fetus 82-40 4539321 YP_892854.1 CDS CFF8240_1736 NC_008599.1 1693468 1694136 D identified by match to protein family HMM PF00484; carbonic anhydrase 1693468..1694136 Campylobacter fetus subsp. fetus 82-40 4539184 YP_892855.1 CDS CFF8240_1737 NC_008599.1 1694099 1695973 D identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 1694099..1695973 Campylobacter fetus subsp. fetus 82-40 4538588 YP_892856.1 CDS CFF8240_1738 NC_008599.1 1695966 1696139 D hypothetical protein 1695966..1696139 Campylobacter fetus subsp. fetus 82-40 4538386 YP_892857.1 CDS CFF8240_1739 NC_008599.1 1696139 1696312 D hypothetical protein 1696139..1696312 Campylobacter fetus subsp. fetus 82-40 4539010 YP_892858.1 CDS CFF8240_1740 NC_008599.1 1696293 1697516 D hypothetical protein 1696293..1697516 Campylobacter fetus subsp. fetus 82-40 4537905 YP_892859.1 CDS aroC NC_008599.1 1697545 1698615 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1697545..1698615) Campylobacter fetus subsp. fetus 82-40 4538057 YP_892860.1 CDS rnc NC_008599.1 1698612 1699283 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1698612..1699283) Campylobacter fetus subsp. fetus 82-40 4539074 YP_892861.1 CDS rnhA NC_008599.1 1699276 1699701 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(1699276..1699701) Campylobacter fetus subsp. fetus 82-40 4538790 YP_892862.1 CDS CFF8240_1744 NC_008599.1 1699679 1700689 R identified by match to protein family HMM PF07719; hypothetical protein complement(1699679..1700689) Campylobacter fetus subsp. fetus 82-40 4538250 YP_892863.1 CDS dnaG NC_008599.1 1700751 1702391 D synthesizes RNA primers at the replication forks; DNA primase 1700751..1702391 Campylobacter fetus subsp. fetus 82-40 4538977 YP_892864.1 CDS CFF8240_1746 NC_008599.1 1702388 1703377 D identified by match to protein family HMM PF00764; thiamine biosynthesis protein:ExsB 1702388..1703377 Campylobacter fetus subsp. fetus 82-40 4538468 YP_892865.1 CDS CFF8240_1747 NC_008599.1 1703484 1704278 D radical SAM family protein 1703484..1704278 Campylobacter fetus subsp. fetus 82-40 4538646 YP_892866.1 CDS CFF8240_1748 NC_008599.1 1704333 1705031 D identified by match to protein family HMM PF04402; hypothetical protein 1704333..1705031 Campylobacter fetus subsp. fetus 82-40 4538776 YP_892867.1 CDS CFF8240_1749 NC_008599.1 1705423 1706730 R identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM PF06808; transporter complement(1705423..1706730) Campylobacter fetus subsp. fetus 82-40 4538753 YP_892868.1 CDS CFF8240_1750 NC_008599.1 1706815 1707861 R surface array protein complement(1706815..1707861) Campylobacter fetus subsp. fetus 82-40 4538948 YP_892869.1 CDS algI NC_008599.1 1707870 1709315 R identified by match to protein family HMM PF03062; alginate O-acetyltransferase AlgI complement(1707870..1709315) Campylobacter fetus subsp. fetus 82-40 4538518 YP_892870.1 CDS ilvD NC_008599.1 1709452 1711125 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1709452..1711125 Campylobacter fetus subsp. fetus 82-40 4539337 YP_892871.1 CDS CFF8240_1753 NC_008599.1 1711364 1712890 D identified by match to protein family HMM PF00149; match to protein family HMM PF02872; UshA protein 1711364..1712890 Campylobacter fetus subsp. fetus 82-40 4537802 YP_892872.1 CDS pyrG NC_008599.1 1713031 1714671 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1713031..1714671 Campylobacter fetus subsp. fetus 82-40 4537781 YP_892873.1 CDS recJ NC_008599.1 1714665 1716257 D identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 1714665..1716257 Campylobacter fetus subsp. fetus 82-40 4538671 YP_892874.1 CDS nhaA NC_008599.1 1716258 1717442 D identified by match to protein family HMM PF06965; match to protein family HMM TIGR00773; Na+/H+ antiporter NhaA 1716258..1717442 Campylobacter fetus subsp. fetus 82-40 4538486 YP_892875.1 CDS CFF8240_1757 NC_008599.1 1717432 1718976 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1717432..1718976 Campylobacter fetus subsp. fetus 82-40 4539307 YP_892876.1 CDS CFF8240_1758 NC_008599.1 1719074 1719820 D identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase family protein 1719074..1719820 Campylobacter fetus subsp. fetus 82-40 4539245 YP_892877.1 CDS CFF8240_1759 NC_008599.1 1719820 1720014 D hypothetical protein 1719820..1720014 Campylobacter fetus subsp. fetus 82-40 4538641 YP_892878.1 CDS CFF8240_1760 NC_008599.1 1720102 1722096 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent heme receptor 1720102..1722096 Campylobacter fetus subsp. fetus 82-40 4537862 YP_892879.1 CDS CFF8240_1761 NC_008599.1 1722086 1723066 D identified by match to protein family HMM PF01032; hemin transport system permease HmuU 1722086..1723066 Campylobacter fetus subsp. fetus 82-40 4539008 YP_892880.1 CDS CFF8240_1762 NC_008599.1 1723066 1723842 D identified by match to protein family HMM PF00005; ferrichrome transport ATP-binding protein FhuC 1723066..1723842 Campylobacter fetus subsp. fetus 82-40 4538392 YP_892881.1 CDS CFF8240_1763 NC_008599.1 1723845 1724639 D identified by match to protein family HMM PF01497; hemin-binding periplasmic protein HmuT 1723845..1724639 Campylobacter fetus subsp. fetus 82-40 4538192 YP_892882.1 CDS CFF8240_1764 NC_008599.1 1724911 1725420 D flavodoxin family protein 1724911..1725420 Campylobacter fetus subsp. fetus 82-40 4538337 YP_892883.1 CDS CFF8240_1768 NC_008599.1 1726782 1727540 D hypothetical protein 1726782..1727540 Campylobacter fetus subsp. fetus 82-40 4537829 YP_892884.1 CDS flgE NC_008599.1 1727603 1730338 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(1727603..1730338) Campylobacter fetus subsp. fetus 82-40 4538228 YP_892885.1 CDS CFF8240_1770 NC_008599.1 1730492 1731163 R identified by match to protein family HMM PF01832; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain-containing protein complement(1730492..1731163) Campylobacter fetus subsp. fetus 82-40 4538830 YP_892886.1 CDS dapF NC_008599.1 1731180 1731923 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(1731180..1731923) Campylobacter fetus subsp. fetus 82-40 4539033 YP_892887.1 CDS coaE NC_008599.1 1731904 1732443 R identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152; dephospho-CoA kinase complement(1731904..1732443) Campylobacter fetus subsp. fetus 82-40 4537754 YP_892888.1 CDS CFF8240_1773 NC_008599.1 1732505 1732900 R identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP complement(1732505..1732900) Campylobacter fetus subsp. fetus 82-40 4539209 YP_892889.1 CDS purM NC_008599.1 1733044 1734027 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1733044..1734027 Campylobacter fetus subsp. fetus 82-40 4537853 YP_892890.1 CDS CFF8240_1775 NC_008599.1 1734059 1735144 R identified by match to protein family HMM PF01734; patatin complement(1734059..1735144) Campylobacter fetus subsp. fetus 82-40 4537963 YP_892891.1 CDS CFF8240_1776 NC_008599.1 1735131 1736324 R identified by match to protein family HMM PF00004; recombination factor protein RarA complement(1735131..1736324) Campylobacter fetus subsp. fetus 82-40 4539299 YP_892892.1 CDS CFF8240_1777 NC_008599.1 1736326 1737216 R identified by match to protein family HMM PF00892; transporter complement(1736326..1737216) Campylobacter fetus subsp. fetus 82-40 4538346 YP_892893.1 CDS CFF8240_1778 NC_008599.1 1737272 1737790 R identified by match to protein family HMM PF00578; thiol peroxidase complement(1737272..1737790) Campylobacter fetus subsp. fetus 82-40 4538407 YP_892894.1 CDS CFF8240_1779 NC_008599.1 1737868 1738281 R identified by match to protein family HMM PF06271; RDD protein complement(1737868..1738281) Campylobacter fetus subsp. fetus 82-40 4537826 YP_892895.1 CDS pyrE NC_008599.1 1738281 1738889 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(1738281..1738889) Campylobacter fetus subsp. fetus 82-40 4537998 YP_892896.1 CDS frr NC_008599.1 1738892 1739449 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(1738892..1739449) Campylobacter fetus subsp. fetus 82-40 4537962 YP_892897.1 CDS CFF8240_1782 NC_008599.1 1739439 1740356 R identified by match to protein family HMM PF01522; polysaccharide deacetylase complement(1739439..1740356) Campylobacter fetus subsp. fetus 82-40 4538761 YP_892898.1 CDS CFF8240_1783 NC_008599.1 1740395 1740724 R identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; protein-export membrane protein complement(1740395..1740724) Campylobacter fetus subsp. fetus 82-40 4538906 YP_892899.1 CDS CFF8240_1784 NC_008599.1 1740824 1741504 R identified by match to protein family HMM PF01027; hypothetical protein complement(1740824..1741504) Campylobacter fetus subsp. fetus 82-40 4539551 YP_892900.1 CDS CFF8240_1786 NC_008599.1 1741883 1742038 R hypothetical protein complement(1741883..1742038) Campylobacter fetus subsp. fetus 82-40 4538449 YP_892901.1 CDS CFF8240_1791 NC_008599.1 1742748 1745948 D identified by match to protein family HMM PF00082; match to protein family HMM PF03797; serine protease 1742748..1745948 Campylobacter fetus subsp. fetus 82-40 4539546 YP_892902.1 CDS CFF8240_1794 NC_008599.1 1747186 1747767 D identified by match to protein family HMM PF02525; MdaB 1747186..1747767 Campylobacter fetus subsp. fetus 82-40 4538271 YP_892903.1 CDS CFF8240_1795 NC_008599.1 1747823 1748095 R flavodoxin complement(1747823..1748095) Campylobacter fetus subsp. fetus 82-40 4538910 YP_892904.1 CDS CFF8240_1796 NC_008599.1 1748495 1748647 R 11-cis retinol dehydrogenase complement(1748495..1748647) Campylobacter fetus subsp. fetus 82-40 4537877 YP_892905.1 CDS CFF8240_1797 NC_008599.1 1748756 1748977 R major facilitator transporter complement(1748756..1748977) Campylobacter fetus subsp. fetus 82-40 4538584 YP_892906.1 CDS CFF8240_1798 NC_008599.1 1749227 1749355 R hypothetical protein complement(1749227..1749355) Campylobacter fetus subsp. fetus 82-40 4539464 YP_892907.1 CDS CFF8240_1799 NC_008599.1 1749373 1749681 R hypothetical protein complement(1749373..1749681) Campylobacter fetus subsp. fetus 82-40 4539000 YP_892908.1 CDS thyX NC_008599.1 1750226 1750846 R flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase complement(1750226..1750846) Campylobacter fetus subsp. fetus 82-40 4538789 YP_892909.1 CDS CFF8240_1801 NC_008599.1 1750881 1752530 R identified by match to protein family HMM PF00732; GMC oxidoreductase family protein complement(1750881..1752530) Campylobacter fetus subsp. fetus 82-40 4538323 YP_892910.1 CDS CFF8240_1802 NC_008599.1 1752558 1753079 R hypothetical protein complement(1752558..1753079) Campylobacter fetus subsp. fetus 82-40 4538709 YP_892911.1 CDS CFF8240_1803 NC_008599.1 1753069 1753503 R identified by match to protein family HMM PF07681; integral membrane protein complement(1753069..1753503) Campylobacter fetus subsp. fetus 82-40 4539257 YP_892912.1 CDS CFF8240_1804 NC_008599.1 1753573 1753743 R hypothetical protein complement(1753573..1753743) Campylobacter fetus subsp. fetus 82-40 4538967 YP_892913.1 CDS CFF8240_1805 NC_008599.1 1753855 1754454 R identified by match to protein family HMM PF00881; nitroreductase complement(1753855..1754454) Campylobacter fetus subsp. fetus 82-40 4539300 YP_892914.1 CDS CFF8240_1806 NC_008599.1 1754477 1754992 R nitroimidazole resistance protein complement(1754477..1754992) Campylobacter fetus subsp. fetus 82-40 4537769 YP_892915.1 CDS CFF8240_1808 NC_008599.1 1755946 1757709 R hypothetical protein complement(1755946..1757709) Campylobacter fetus subsp. fetus 82-40 4539545 YP_892916.1 CDS CFF8240_1809 NC_008599.1 1757736 1758500 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; pseudouridine synthase, Rsu:RNA-binding S4:pseudouridine synthase complement(1757736..1758500) Campylobacter fetus subsp. fetus 82-40 4538870 YP_892917.1 CDS CFF8240_1810 NC_008599.1 1758500 1759480 R identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; KpsF/GutQ complement(1758500..1759480) Campylobacter fetus subsp. fetus 82-40 4539556 YP_892918.1 CDS CFF8240_1811 NC_008599.1 1759477 1761414 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; metallo-beta-lactamase family protein complement(1759477..1761414) Campylobacter fetus subsp. fetus 82-40 4539314 YP_892919.1 CDS ksgA NC_008599.1 1761407 1762213 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1761407..1762213) Campylobacter fetus subsp. fetus 82-40 4539246 YP_892920.1 CDS CFF8240_1813 NC_008599.1 1762246 1763478 R identified by match to protein family HMM PF05977; match to protein family HMM PF07690; major facilitator superfamily permease complement(1762246..1763478) Campylobacter fetus subsp. fetus 82-40 4538142 YP_892921.1 CDS hisF NC_008599.1 1763599 1764357 D identified by match to protein family HMM PF00977; match to protein family HMM TIGR00735; Imidazole glycerol phosphate synthase cyclase subunit 1763599..1764357 Campylobacter fetus subsp. fetus 82-40 4537858 YP_892922.1 CDS CFF8240_1815 NC_008599.1 1764354 1764893 D purine nucleoside phosphorylase 1764354..1764893 Campylobacter fetus subsp. fetus 82-40 4538827 YP_892923.1 CDS CFF8240_1816 NC_008599.1 1764890 1765954 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1764890..1765954 Campylobacter fetus subsp. fetus 82-40 4538343 YP_892924.1 CDS CFF8240_1817 NC_008599.1 1765951 1766250 D identified by match to protein family HMM PF04993; TfoX domain-containing protein 1765951..1766250 Campylobacter fetus subsp. fetus 82-40 4538026 YP_892925.1 CDS CFF8240_1818 NC_008599.1 1766401 1767360 R similar to jhp_0321; identified by match to protein family HMM PF00849; RNA pseudouridine synthase complement(1766401..1767360) Campylobacter fetus subsp. fetus 82-40 4539064 YP_892926.1 CDS purB NC_008599.1 1767442 1768770 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1767442..1768770 Campylobacter fetus subsp. fetus 82-40 4539014 YP_892927.1 CDS CFF8240_1820 NC_008599.1 1768847 1771222 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1768847..1771222 Campylobacter fetus subsp. fetus 82-40 4537880 YP_892928.1 CDS lysP NC_008599.1 1771451 1772920 D identified by match to protein family HMM PF00324; lysine-specific permease 1771451..1772920 Campylobacter fetus subsp. fetus 82-40 4539227 YP_892929.1 CDS ruvC NC_008599.1 1772968 1773441 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(1772968..1773441) Campylobacter fetus subsp. fetus 82-40 4538390 CFF8240_0141 tRNA CFF8240_0141 NC_008599.1 122709 122796 R tRNA-Ser complement(122709..122796) Campylobacter fetus subsp. fetus 82-40 4537816 CFF8240_0153 tRNA CFF8240_0153 NC_008599.1 135202 135277 D tRNA-Ala 135202..135277 Campylobacter fetus subsp. fetus 82-40 4537939 CFF8240_0507 tRNA CFF8240_0507 NC_008599.1 510465 510540 D tRNA-Ala 510465..510540 Campylobacter fetus subsp. fetus 82-40 4537887 CFF8240_0593 tRNA CFF8240_0593 NC_008599.1 605314 605390 D tRNA-Ile 605314..605390 Campylobacter fetus subsp. fetus 82-40 4537842 CFF8240_0597 tRNA CFF8240_0597 NC_008599.1 610432 610507 D tRNA-Lys 610432..610507 Campylobacter fetus subsp. fetus 82-40 4537809 CFF8240_0598 tRNA CFF8240_0598 NC_008599.1 610522 610597 D tRNA-Val 610522..610597 Campylobacter fetus subsp. fetus 82-40 4537840 CFF8240_0599 tRNA CFF8240_0599 NC_008599.1 610609 610685 D tRNA-Asp 610609..610685 Campylobacter fetus subsp. fetus 82-40 4537841 CFF8240_0600 tRNA CFF8240_0600 NC_008599.1 610697 610772 D tRNA-Lys 610697..610772 Campylobacter fetus subsp. fetus 82-40 4537815 CFF8240_0601 tRNA CFF8240_0601 NC_008599.1 610792 610868 D tRNA-Glu 610792..610868 Campylobacter fetus subsp. fetus 82-40 4537891 CFF8240_0602 tRNA CFF8240_0602 NC_008599.1 610881 610956 D tRNA-Val 610881..610956 Campylobacter fetus subsp. fetus 82-40 4537814 CFF8240_0603 tRNA CFF8240_0603 NC_008599.1 610968 611044 D tRNA-Asp 610968..611044 Campylobacter fetus subsp. fetus 82-40 4537893 CFF8240_0604 tRNA CFF8240_0604 NC_008599.1 611082 611157 D tRNA-Lys 611082..611157 Campylobacter fetus subsp. fetus 82-40 4537839 CFF8240_0605 tRNA CFF8240_0605 NC_008599.1 611179 611253 D tRNA-Glu 611179..611253 Campylobacter fetus subsp. fetus 82-40 4538889 CFF8240_0643 tRNA CFF8240_0643 NC_008599.1 654904 654990 D tRNA-Leu 654904..654990 Campylobacter fetus subsp. fetus 82-40 4537844 CFF8240_1052 tRNA CFF8240_1052 NC_008599.1 1051645 1051721 D tRNA-Arg 1051645..1051721 Campylobacter fetus subsp. fetus 82-40 4537938 CFF8240_1228 tRNA CFF8240_1228 NC_008599.1 1211839 1211915 R tRNA-Met complement(1211839..1211915) Campylobacter fetus subsp. fetus 82-40 4538886 CFF8240_1282 tRNA CFF8240_1282 NC_008599.1 1273438 1273523 D tRNA-Leu 1273438..1273523 Campylobacter fetus subsp. fetus 82-40 4537889 CFF8240_1310 tRNA CFF8240_1310 NC_008599.1 1298729 1298805 R tRNA-Arg complement(1298729..1298805) Campylobacter fetus subsp. fetus 82-40 4537940 CFF8240_1323 tRNA CFF8240_1323 NC_008599.1 1313745 1313820 R tRNA-Trp complement(1313745..1313820) Campylobacter fetus subsp. fetus 82-40 4538888 CFF8240_1326 tRNA CFF8240_1326 NC_008599.1 1315337 1315411 R tRNA-Thr complement(1315337..1315411) Campylobacter fetus subsp. fetus 82-40 4537941 CFF8240_1327 tRNA CFF8240_1327 NC_008599.1 1315550 1315626 R tRNA-Gly complement(1315550..1315626) Campylobacter fetus subsp. fetus 82-40 4537894 CFF8240_1328 tRNA CFF8240_1328 NC_008599.1 1315635 1315719 R tRNA-Tyr complement(1315635..1315719) Campylobacter fetus subsp. fetus 82-40 4538887 CFF8240_1329 tRNA CFF8240_1329 NC_008599.1 1315776 1315851 R tRNA-Thr complement(1315776..1315851) Campylobacter fetus subsp. fetus 82-40 4537810 CFF8240_1331 tRNA CFF8240_1331 NC_008599.1 1316729 1316819 R tRNA-Ser complement(1316729..1316819) Campylobacter fetus subsp. fetus 82-40 4537843 CFF8240_1357 tRNA CFF8240_1357 NC_008599.1 1339721 1339796 R tRNA-Phe complement(1339721..1339796) Campylobacter fetus subsp. fetus 82-40 4538890 CFF8240_1452 tRNA CFF8240_1452 NC_008599.1 1436407 1436481 D tRNA-Gln 1436407..1436481 Campylobacter fetus subsp. fetus 82-40 4537888 CFF8240_1453 tRNA CFF8240_1453 NC_008599.1 1436494 1436568 D tRNA-Met 1436494..1436568 Campylobacter fetus subsp. fetus 82-40 4537813 CFF8240_1454 tRNA CFF8240_1454 NC_008599.1 1436729 1436803 R tRNA-Asn complement(1436729..1436803) Campylobacter fetus subsp. fetus 82-40 4537934 CFF8240_1672 tRNA CFF8240_1672 NC_008599.1 1641033 1641107 D tRNA-Glu 1641033..1641107 Campylobacter fetus subsp. fetus 82-40 4537846 CFF8240_1681 tRNA CFF8240_1681 NC_008599.1 1648876 1648960 R tRNA-Leu complement(1648876..1648960) Campylobacter fetus subsp. fetus 82-40 4537937 CFF8240_1682 tRNA CFF8240_1682 NC_008599.1 1648971 1649047 R tRNA-Arg complement(1648971..1649047) Campylobacter fetus subsp. fetus 82-40 4537845 CFF8240_1683 tRNA CFF8240_1683 NC_008599.1 1649102 1649178 R tRNA-Arg complement(1649102..1649178) Campylobacter fetus subsp. fetus 82-40 4537818 CFF8240_1684 tRNA CFF8240_1684 NC_008599.1 1649203 1649279 R tRNA-His complement(1649203..1649279) Campylobacter fetus subsp. fetus 82-40 4537847 CFF8240_1685 tRNA CFF8240_1685 NC_008599.1 1649284 1649361 R tRNA-Pro complement(1649284..1649361) Campylobacter fetus subsp. fetus 82-40 4537811 CFF8240_1713 tRNA CFF8240_1713 NC_008599.1 1675209 1675284 R tRNA-Val complement(1675209..1675284) Campylobacter fetus subsp. fetus 82-40 4537812 CFF8240_1767 tRNA CFF8240_1767 NC_008599.1 1726581 1726657 R tRNA-Met complement(1726581..1726657) Campylobacter fetus subsp. fetus 82-40 4537890 CFF8240_1785 tRNA CFF8240_1785 NC_008599.1 1741787 1741874 R tRNA-Ser complement(1741787..1741874) Campylobacter fetus subsp. fetus 82-40 4537892 CFF8240_1787 tRNA CFF8240_1787 NC_008599.1 1742059 1742132 R tRNA-Cys complement(1742059..1742132) Campylobacter fetus subsp. fetus 82-40 4537933 CFF8240_1788 tRNA CFF8240_1788 NC_008599.1 1742156 1742242 R tRNA-Leu complement(1742156..1742242) Campylobacter fetus subsp. fetus 82-40 4537817 CFF8240_1789 tRNA CFF8240_1789 NC_008599.1 1742253 1742327 R tRNA-Gly complement(1742253..1742327) Campylobacter fetus subsp. fetus 82-40 4537935 CFF8240_1790 tRNA CFF8240_1790 NC_008599.1 1742470 1742545 D tRNA-Ala 1742470..1742545 Campylobacter fetus subsp. fetus 82-40 4537936 CFF8240_0152 rRNA rrsC NC_008599.1 133597 135057 D 16S ribosomal RNA 133597..135057 Campylobacter fetus subsp. fetus 82-40 4538882 CFF8240_0154 rRNA rrlC NC_008599.1 135869 138892 D 23S ribosomal RNA join(135869..137068,137148..138892) Campylobacter fetus subsp. fetus 82-40 4538884 CFF8240_0155 rRNA rrfC NC_008599.1 139199 139319 D 5S ribosomal RNA 139199..139319 Campylobacter fetus subsp. fetus 82-40 4539039 CFF8240_0506 rRNA rrsD NC_008599.1 508860 510320 D 16S ribosomal RNA 508860..510320 Campylobacter fetus subsp. fetus 82-40 4539043 CFF8240_0508 rRNA rrlD NC_008599.1 511132 514155 D 23S ribosomal RNA join(511132..512331,512412..514155) Campylobacter fetus subsp. fetus 82-40 4538883 CFF8240_0509 rRNA rrfD NC_008599.1 514462 514582 D 5S ribosomal RNA 514462..514582 Campylobacter fetus subsp. fetus 82-40 4539042 CFF8240_0592 rRNA rrsE NC_008599.1 603684 605144 D 16S ribosomal RNA 603684..605144 Campylobacter fetus subsp. fetus 82-40 4539041 CFF8240_0594 rRNA rrlE NC_008599.1 605963 608986 D 23S ribosomal RNA join(605963..607162,607243..608986) Campylobacter fetus subsp. fetus 82-40 4538881 CFF8240_0595 rRNA rrfE NC_008599.1 609293 609413 D 5S ribosomal RNA 609293..609413 Campylobacter fetus subsp. fetus 82-40 4539040